BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045203
         (154 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|I6V1W0|BMBL_DANRE Protein brambleberry OS=Danio rerio GN=bmb PE=2 SV=1
          Length = 612

 Score = 30.8 bits (68), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 10  TYPCIEEINDETCVADITDGD------IAANNLSS-CNSTSRFNFKKAVFKLEIHDDIAQ 62
           TYPC EE++ + C AD+ D D      I +N   S C +T + +F+K   +L ++  I+ 
Sbjct: 115 TYPCTEEMSIKECTADM-DSDTWNAYHIVSNRARSVCYATRQQHFRKRA-ELTVNALIS- 171

Query: 63  QAAFSIVSKFKGITDLSVDPKDRTRMT 89
               +  S+   + DL    K+   MT
Sbjct: 172 ----TATSQLDAMKDLKEGQKELRDMT 194


>sp|Q5V0Z6|COBQ_HALMA Probable cobyric acid synthase OS=Haloarcula marismortui (strain
           ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=cobQ
           PE=3 SV=1
          Length = 492

 Score = 29.3 bits (64), Expect = 8.9,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 7/52 (13%)

Query: 47  FKKAVFKLE-IHDDIAQQAAFSIVSKFKGITDLSVDP-----KDRTRMTVIG 92
           F   V  LE + DDI +Q A ++++KF+G   L +DP     +DRT + V+G
Sbjct: 172 FASLVGTLELVPDDIRKQVAGAVITKFRGDQSL-LDPGIDAFEDRTGVPVLG 222


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,549,822
Number of Sequences: 539616
Number of extensions: 1946207
Number of successful extensions: 4501
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4499
Number of HSP's gapped (non-prelim): 10
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)