BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045207
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 292 bits (747), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 166/408 (40%), Positives = 232/408 (56%), Gaps = 61/408 (14%)
Query: 1 KHGLEIRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIACVQSSATIGQLYYK 60
K GL+IR R GGH EG+SY+S VP +DV ++ A V++ AT+G++YY
Sbjct: 75 KVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYW 134
Query: 61 IAEKSKILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDRES 120
I EK++ L+F G C +VGV GHFS AAD+++DAHL++V+G+ LDR+S
Sbjct: 135 INEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKS 194
Query: 121 MGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTI------------LNKWQYIAD 168
MGEDLFWAI GGG +FG+I AWKIKLV VP T+F++ NKWQ IA
Sbjct: 195 MGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAY 254
Query: 169 KLDEDLIL--RIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQD 226
K D+DL+L + + D K K T+ FS +F GGVD L+ LM++SF LG+ K D
Sbjct: 255 KYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTD 314
Query: 227 CIELSWIKSVLCFAGFQKRES----RDVLLERTT------------------------IL 258
C E SWI + + ++G + +++LL+R+ IL
Sbjct: 315 CKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKIL 374
Query: 259 E-----------------GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHI 301
E GG M EISES IPF HRAG + ++ + W ++ E +++HI
Sbjct: 375 EKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQ--EDNEKHI 432
Query: 302 NWIGELYSYLTPYVSKDPREAYINYKDLDIGMNNEGYTTNYKQASIWG 349
NW+ +Y++ TPYVS++PR AY+NY+DLD+G N NY QA IWG
Sbjct: 433 NWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWG 480
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 209/402 (51%), Gaps = 67/402 (16%)
Query: 1 KHGLEIRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIAC--VQSSATIGQLY 58
+HG+ IRVR GGH +EG+SY S P V ++ + A V S A +G LY
Sbjct: 76 RHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVDSGAQLGDLY 135
Query: 59 YKIAEKSKILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDR 118
Y IA+ S L F AG+C ++GV GHFS AAD+V+DA ++D +GR LDR
Sbjct: 136 YGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVVDAQGRLLDR 195
Query: 119 ESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTI-----------LNKWQYIA 167
++MGED FWAI GGG SFG++ +W++KL+ VP VTVF + + KWQ +A
Sbjct: 196 KAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAIDLVTKWQTVA 255
Query: 168 DKLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDC 227
L +DL++RI A +G A+F L+LG L+ LM F LG+ C
Sbjct: 256 PALPDDLMIRIM------AMGQG-----AMFEALYLGTCKDLVLLMTARFPELGMNATHC 304
Query: 228 IELSWIKSVLCFAGFQKRESRDVLLERTT------------ILE---------------- 259
E++WI+SV K RD LL RT+ +LE
Sbjct: 305 KEMTWIESVPYIPMGPKGTVRD-LLNRTSNIKAFGKYKSDYVLEPIPKSDWEKIFTWLVK 363
Query: 260 -----------GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELY 308
GG ++ + ES PF R+G + I+++V W EG A+ W ++Y
Sbjct: 364 PGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEG--AAALPTQWTRDIY 421
Query: 309 SYLTPYVSKDPREAYINYKDLDIGMNN-EGYTTNYKQASIWG 349
++TPYVSK+PR+AY+NY+DLD+G+N G + Y +WG
Sbjct: 422 DFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWG 463
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/404 (34%), Positives = 203/404 (50%), Gaps = 69/404 (17%)
Query: 1 KHGLEIRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXV--DVENEIACVQSSATIGQLY 58
+H + IRVR GGH +EG+SY S P V D + A V S A +G+LY
Sbjct: 74 RHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELY 133
Query: 59 YKIAEKSKILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDR 118
Y I + S LAF AG+C ++GV G+F+ AA++V+D L+D G+ D+
Sbjct: 134 YAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDK 193
Query: 119 ESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFT-----------ILNKWQYIA 167
+SMG+D FWA+ GGG SFG+++AW++KL+ VP TVT+F I+NKWQ +A
Sbjct: 194 KSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVA 253
Query: 168 DKLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDC 227
+L DL++RI A+G + A F ++LG L PLM F LG+ C
Sbjct: 254 PQLPADLMIRII--------AQGPK---ATFEAMYLGTCKTLTPLMSSKFPELGMNPSHC 302
Query: 228 IELSWIKSVLCFAGFQKRES-RDVLLER--------------------TTILE------- 259
E+SWI+S+ F R++ D LL R T+ E
Sbjct: 303 NEMSWIQSI-PFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWL 361
Query: 260 -------------GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGE 306
G +S ES PF HR G + I+++ W G A+ ++W +
Sbjct: 362 VKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAP--LSWSKD 419
Query: 307 LYSYLTPYVSKDPREAYINYKDLDIGMNN-EGYTTNYKQASIWG 349
+Y+Y+ PYVSK+PR+AY NY+D+D+G N + Y +WG
Sbjct: 420 IYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWG 463
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/381 (35%), Positives = 194/381 (50%), Gaps = 56/381 (14%)
Query: 1 KHGLEIRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIACVQSSATIGQLYYK 60
K IR+R GGH +EG+SY S+ P +D+E+E A V+S +T+G+LYY
Sbjct: 67 KGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYA 126
Query: 61 IAEKSKILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDRES 120
I E S L F AG C +VG GH S AAD+VVDA LID G LDR++
Sbjct: 127 ITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQA 186
Query: 121 MGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVF------------TILNKWQYIAD 168
MGED+FWAI GGG +G I AWKIKL+ VP+ VTVF ++L+KWQ++A+
Sbjct: 187 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAE 246
Query: 169 KLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCI 228
+L+ED L + A K+ + G G D F LGLV++D +
Sbjct: 247 ELEEDFTLSVL------GGADEKQVWLTML-GFHFGLKTVAKSTFDLLFPELGLVEEDYL 299
Query: 229 ELSWIKSVLCFAG----------FQKRESRDV------------------LLERTTILE- 259
E+SW +S AG F K + R LLER +
Sbjct: 300 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPN 359
Query: 260 --------GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYL 311
GG+MS+IS PF HR+G +E++V W + + ++W+ ++Y ++
Sbjct: 360 GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFM 419
Query: 312 TPYVSKDPREAYINYKDLDIG 332
P+VSK+PR Y+N+ DLD+G
Sbjct: 420 KPFVSKNPRLGYVNHIDLDLG 440
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 136/376 (36%), Positives = 193/376 (51%), Gaps = 56/376 (14%)
Query: 6 IRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIACVQSSATIGQLYYKIAEKS 65
IR+R GGH +EG+SY S+ P +D+E+E A V+S +T+G+LYY I E S
Sbjct: 97 IRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESS 156
Query: 66 KILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDRESMGEDL 125
L F AG C +VG GH S AAD+VVDA LID G LDR++MGED+
Sbjct: 157 SKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDV 216
Query: 126 FWAILVGGGASFGVIIAWKIKLVTVPQTVTVF------------TILNKWQYIADKLDED 173
FWAI GGG +G I AWKIKL+ VP+ VTVF ++L+KWQ++A++L+ED
Sbjct: 217 FWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED 276
Query: 174 LILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWI 233
L + A K+ + G G D F LGLV++D +E+SW
Sbjct: 277 FTLSVL------GGADEKQVWLTML-GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWG 329
Query: 234 KSVLCFAG----------FQKRESRDV------------------LLERTTILE------ 259
+S AG F K + R LLER +
Sbjct: 330 ESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIAL 389
Query: 260 ---GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVS 316
GG+MS+IS PF HR+G +E++V W + + ++W+ ++Y ++ P+VS
Sbjct: 390 NGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVS 449
Query: 317 KDPREAYINYKDLDIG 332
K+PR Y+N+ DLD+G
Sbjct: 450 KNPRLGYVNHIDLDLG 465
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 192/376 (51%), Gaps = 56/376 (14%)
Query: 6 IRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIACVQSSATIGQLYYKIAEKS 65
IR+R GGH +EG+SY S+ P +D+E+E A V+S +T+G+LYY I E S
Sbjct: 78 IRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESS 137
Query: 66 KILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDRESMGEDL 125
L F AG C +VG G S AAD+VVDA LID G LDR++MGED+
Sbjct: 138 SKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDV 197
Query: 126 FWAILVGGGASFGVIIAWKIKLVTVPQTVTVF------------TILNKWQYIADKLDED 173
FWAI GGG +G I AWKIKL+ VP+ VTVF ++L+KWQ++A++L+ED
Sbjct: 198 FWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED 257
Query: 174 LILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWI 233
L + A K+ + G G D F LGLV++D +E+SW
Sbjct: 258 FTLSVL------GGADEKQVWLTML-GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWG 310
Query: 234 KSVLCFAG----------FQKRESRDV------------------LLERTTILE------ 259
+S AG F K + R LLER +
Sbjct: 311 ESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIAL 370
Query: 260 ---GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVS 316
GG+MS+IS PF HR+G +E++V W + + ++W+ ++Y ++ P+VS
Sbjct: 371 NGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVS 430
Query: 317 KDPREAYINYKDLDIG 332
K+PR Y+N+ DLD+G
Sbjct: 431 KNPRLGYVNHIDLDLG 446
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 136/376 (36%), Positives = 193/376 (51%), Gaps = 56/376 (14%)
Query: 6 IRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIACVQSSATIGQLYYKIAEKS 65
IR+R GGH +EG+SY S+ P +D+E+E A V+S +T+G+LYY I E S
Sbjct: 78 IRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESS 137
Query: 66 KILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDRESMGEDL 125
L F AG C +VG GH S AAD+VVDA LID G LDR++MGED+
Sbjct: 138 SKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDV 197
Query: 126 FWAILVGGGASFGVIIAWKIKLVTVPQTVTVF------------TILNKWQYIADKLDED 173
FWAI GGG +G I AWKIKL+ VP+ VTVF ++L+KWQ++A++L+ED
Sbjct: 198 FWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED 257
Query: 174 LILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWI 233
L + A K+ + G G D F LGLV++D +E+SW
Sbjct: 258 FTLSVL------GGADEKQVWLTML-GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWG 310
Query: 234 KSVLCFAG----------FQKRESRDV------------------LLERTTILE------ 259
+S AG F K + R LLER +
Sbjct: 311 ESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIAL 370
Query: 260 ---GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVS 316
GG+MS+IS PF HR+G +E++V W + + ++W+ ++Y ++ P+VS
Sbjct: 371 NGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVS 430
Query: 317 KDPREAYINYKDLDIG 332
K+PR Y+N+ DLD+G
Sbjct: 431 KNPRLGYVNHIDLDLG 446
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 192/376 (51%), Gaps = 56/376 (14%)
Query: 6 IRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIACVQSSATIGQLYYKIAEKS 65
IR+R GGH +EG+SY S+ P +D+E+E A V+S +T+G+LYY I E S
Sbjct: 72 IRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESS 131
Query: 66 KILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDRESMGEDL 125
L F AG +VG GH S AAD+VVDA LID G LDR++MGED+
Sbjct: 132 SKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDV 191
Query: 126 FWAILVGGGASFGVIIAWKIKLVTVPQTVTVF------------TILNKWQYIADKLDED 173
FWAI GGG +G I AWKIKL+ VP+ VTVF ++L+KWQ++A++L+ED
Sbjct: 192 FWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED 251
Query: 174 LILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWI 233
L + A K+ + G G D F LGLV++D +E+SW
Sbjct: 252 FTLSVL------GGADEKQVWLTML-GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWG 304
Query: 234 KSVLCFAG----------FQKRESRDV------------------LLERTTILE------ 259
+S AG F K + R LLER +
Sbjct: 305 ESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIAL 364
Query: 260 ---GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVS 316
GG+MS+IS PF HR+G +E++V W + + ++W+ ++Y ++ P+VS
Sbjct: 365 NGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVS 424
Query: 317 KDPREAYINYKDLDIG 332
K+PR Y+N+ DLD+G
Sbjct: 425 KNPRLGYVNHIDLDLG 440
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 136/381 (35%), Positives = 193/381 (50%), Gaps = 56/381 (14%)
Query: 1 KHGLEIRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIACVQSSATIGQLYYK 60
K IR+R GG +EG+SY S+ P +D+E+E A V+S +T+G+LYY
Sbjct: 70 KGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYA 129
Query: 61 IAEKSKILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDRES 120
I E S L F AG C +VG GH S AAD+VVDA LID G LDR++
Sbjct: 130 ITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQA 189
Query: 121 MGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVF------------TILNKWQYIAD 168
MGED+FWAI GGG +G I AWKIKL+ VP+ VTVF ++L+KWQ++A+
Sbjct: 190 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAE 249
Query: 169 KLDEDLILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCI 228
+L+ED L + A K+ + G G D F LGLV++D +
Sbjct: 250 ELEEDFTLSVL------GGADEKQVWLTML-GFHFGLKTVAKSTFDLLFPELGLVEEDYL 302
Query: 229 ELSWIKSVLCFAG----------FQKRESRDV------------------LLERTTILE- 259
E+SW +S AG F K + R LLER +
Sbjct: 303 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPN 362
Query: 260 --------GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYL 311
GG+MS+IS PF HR+G +E++V W + + ++W+ ++Y ++
Sbjct: 363 GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFM 422
Query: 312 TPYVSKDPREAYINYKDLDIG 332
P+VSK+PR Y+N+ DLD+G
Sbjct: 423 KPFVSKNPRLGYVNHIDLDLG 443
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 192/376 (51%), Gaps = 56/376 (14%)
Query: 6 IRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIACVQSSATIGQLYYKIAEKS 65
IR+R GGH +EG+SY S+ P +D+E+E A V+S +T+G+LYY I E S
Sbjct: 72 IRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESS 131
Query: 66 KILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFLDRESMGEDL 125
L F AG +VG GH S AAD+VVDA LID G LDR++MGED+
Sbjct: 132 SKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDV 191
Query: 126 FWAILVGGGASFGVIIAWKIKLVTVPQTVTVF------------TILNKWQYIADKLDED 173
FWAI GGG +G I AWKIKL+ VP+ VTVF ++L+KWQ++A++L+ED
Sbjct: 192 FWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEED 251
Query: 174 LILRIFLRRLVDATAKGKRTMQALFSGLFLGGVDRLLPLMDQSFHVLGLVKQDCIELSWI 233
L + A K+ + G G D F LGLV++D +E+SW
Sbjct: 252 FTLSVL------GGADEKQVWLTML-GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWG 304
Query: 234 KSVLCFAG----------FQKRESRDV------------------LLERTTILE------ 259
+S AG F K + R LLER +
Sbjct: 305 ESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIAL 364
Query: 260 ---GGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYLTPYVS 316
GG+MS+IS PF HR+G +E++V W + + ++W+ ++Y ++ P+VS
Sbjct: 365 NGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVS 424
Query: 317 KDPREAYINYKDLDIG 332
K+PR Y+N+ DLD+G
Sbjct: 425 KNPRLGYVNHIDLDLG 440
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 15/208 (7%)
Query: 45 IACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVV 104
IA V+ A +G L + +K A G C VG+ GHF+ A D VV
Sbjct: 103 IAHVEPGARLGHLATVLNDKYG-RAISHGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVV 161
Query: 105 DAHLIDVEGRFLDRESM-GEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKW 163
++ +GR ++ + DLFW I G G++FG++ WK+ P+ +T F + W
Sbjct: 162 GVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVWKLATFPAPKVLTRFGVTLNW 220
Query: 164 QYIADKLD-----EDLILRIFLR----RLVDATAKGKRTMQALFSGLFLGGVDRLLPLMD 214
+ L ED + R R+ D A G ++ L+ G PL+D
Sbjct: 221 KNKTSALKGIEAVEDYARWVAPREVNFRIGDYGA-GNPGIEGLYYGTPEQWRAAFQPLLD 279
Query: 215 QSFHVLGLVKQDCIELSWIKSVLCFAGF 242
G V L+WI+SVL ++ F
Sbjct: 280 TL--PAGYVVNPTTSLNWIESVLSYSNF 305
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 12/157 (7%)
Query: 2 HGLEIRVRGGGHYFEGVSYVSNVPXXXXXXXXXXXXXVDVENEIACVQSSATIGQLYYKI 61
+GLEI VR GGH G Y +N +D A + G L +
Sbjct: 61 NGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDL---V 115
Query: 62 AEKSKI-LAFLAGICHSVGVDGHFSXXXXXXXXXXXXXAADHVVDAHLIDVEGRFL---D 117
E +K LA + G+ VG G A+D+++ A L+ G + D
Sbjct: 116 KEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSD 175
Query: 118 RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTV 154
E +LFWA+ G G +FGV+ +++L +P+ +
Sbjct: 176 DER--PELFWAVR-GAGPNFGVVTEVEVQLYELPRKM 209
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 119 ESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQ 164
E+ DLFWA+ GGG F ++ ++ P+ +T + + W
Sbjct: 181 ETENADLFWALR-GGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWN 225
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 119 ESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVFTILNKWQ 164
E+ DLFWA+ GGG F ++ ++ P+ +T + + W
Sbjct: 181 ETENADLFWALR-GGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWN 225
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 39 VDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSXXXXXXXXXXXXX 98
+D + V++ A + ++ K AE ++ G S + G+ S
Sbjct: 111 IDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGL 170
Query: 99 AADHVVDAHLIDVEGRF------LDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQ 152
A D + ++ +GR L +++ G DL + +G + G+I A +KL P+
Sbjct: 171 ARDXALGVEVVLADGRVXNLLSKLKKDNTGYDL-RDLFIGAEGTLGIITAATLKLFPKPR 229
Query: 153 TV-TVF 157
V T F
Sbjct: 230 AVETAF 235
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 257 ILEGGKMSEISESKIPFRHRAGNICQIEHLVVWAEEGIEASQRHINWIGELYSYL----- 311
I GGK++ + + R +I +I ++ W + + H+ WI ELY +
Sbjct: 405 IAYGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPV--HVRWIRELYRDVYADTG 461
Query: 312 -TPYVSKDPREAYINYKDLDIG 332
P AY+NY D+D+
Sbjct: 462 GVPVPGGAADGAYVNYPDVDLA 483
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 107/296 (36%), Gaps = 84/296 (28%)
Query: 117 DRESMGEDLFWAILVGGGASFGVIIAWKIK------------LVTVPQTVTVFTILNKWQ 164
+R+ DL+WA GGG +FGV+ + ++ L P T+ T+ W
Sbjct: 201 ERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVTFDWA 260
Query: 165 YIADKLDEDLILRIFLR--RLVDATAKGKRTMQALFSGLFLGG---------------VD 207
+ E R+ + + L+S L +G VD
Sbjct: 261 ----GMTEAAFSRLLRNHGEWYERNSGPDSPYTGLWSQLMIGNEVPGMGESGFMMPIQVD 316
Query: 208 RLLP----LMDQSFHVLGLVK-------QDCIELSWIKSVL----------CFAGFQKRE 246
P L+D H+ ++ + IE W+ S AG+ ++
Sbjct: 317 ATRPDARRLLDA--HIEAVIDGVPPAEVPEPIEQRWLASTPGRGGRGPASKTKAGYLRKR 374
Query: 247 SRD----VLLERTTILE------------GGKMSEISESKIPFRHRAGNICQIEHLVVWA 290
D + E T ++ GGK++ + + R I ++ ++ WA
Sbjct: 375 LTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDA-ILKVNYITGWA 433
Query: 291 EEGIEASQRHINWIGELYSYL------TPYVSKDPREAYINYKDLDI---GMNNEG 337
G EA +H+ W+ +LY+ + P + AYINY D D+ G+N G
Sbjct: 434 NPGNEA--KHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDLADPGLNTSG 487
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 21/87 (24%)
Query: 104 VDAHLIDVEGRFLDRESMGEDLFWAILVGG-------------GASFGVIIAWKIKLV-- 148
VD H ID RF GE L WA + GG A+ GV + ++ L
Sbjct: 69 VDYHFID-PTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGA 127
Query: 149 -----TVPQTVTVFTILNKWQYIADKL 170
T+P+ VTVF WQ + +L
Sbjct: 128 RAIKKTMPEAVTVFLAPPSWQDLQARL 154
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 21/87 (24%)
Query: 104 VDAHLIDVEGRFLDRESMGEDLFWAILVGG-------------GASFGVIIAWKIKLV-- 148
VD H ID RF GE L WA + GG A+ GV + ++ L
Sbjct: 66 VDYHFID-PTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGA 124
Query: 149 -----TVPQTVTVFTILNKWQYIADKL 170
T+P+ VTVF WQ + +L
Sbjct: 125 RAIKKTMPEAVTVFLAPPSWQDLQARL 151
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 21/87 (24%)
Query: 104 VDAHLIDVEGRFLDRESMGEDLFWAILVGG-------------GASFGVIIAWKIKLV-- 148
VD H ID RF GE L WA + GG A+ GV + ++ L
Sbjct: 69 VDYHFID-PTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGA 127
Query: 149 -----TVPQTVTVFTILNKWQYIADKL 170
T+P+ VTVF WQ + +L
Sbjct: 128 RAIKKTMPEAVTVFLAPPSWQDLQARL 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,924,302
Number of Sequences: 62578
Number of extensions: 381401
Number of successful extensions: 676
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 33
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)