Query 045207
Match_columns 350
No_of_seqs 233 out of 2081
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 10:52:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 1.7E-30 3.7E-35 261.2 17.9 152 2-158 89-249 (525)
2 TIGR01676 GLDHase galactonolac 100.0 6.2E-29 1.3E-33 249.8 18.6 147 1-154 83-232 (541)
3 PLN02805 D-lactate dehydrogena 100.0 5.9E-29 1.3E-33 253.1 17.1 152 1-156 155-313 (555)
4 PRK11282 glcE glycolate oxidas 100.0 1.2E-28 2.6E-33 237.9 16.7 151 1-156 16-175 (352)
5 TIGR01678 FAD_lactone_ox sugar 100.0 1.9E-28 4.1E-33 243.8 18.4 150 1-157 36-188 (438)
6 TIGR01679 bact_FAD_ox FAD-link 100.0 4.4E-28 9.5E-33 240.5 17.4 144 5-155 34-180 (419)
7 PRK11230 glycolate oxidase sub 100.0 7E-28 1.5E-32 243.5 17.1 154 1-156 77-236 (499)
8 TIGR01677 pln_FAD_oxido plant- 99.9 5.6E-27 1.2E-31 238.3 18.5 156 1-159 53-220 (557)
9 TIGR00387 glcD glycolate oxida 99.9 5.6E-27 1.2E-31 232.5 15.9 153 1-155 19-178 (413)
10 COG0277 GlcD FAD/FMN-containin 99.9 1.2E-26 2.5E-31 232.5 14.0 151 1-154 53-210 (459)
11 PLN02465 L-galactono-1,4-lacto 99.9 7.1E-25 1.5E-29 222.2 18.4 147 1-154 118-267 (573)
12 PF01565 FAD_binding_4: FAD bi 99.9 7E-23 1.5E-27 173.1 9.7 115 1-117 22-137 (139)
13 KOG1231 Proteins containing th 99.9 1.9E-22 4.1E-27 193.5 12.4 147 3-152 89-240 (505)
14 PRK13905 murB UDP-N-acetylenol 99.8 5.5E-20 1.2E-24 174.9 9.2 139 1-151 52-193 (298)
15 KOG4730 D-arabinono-1, 4-lacto 99.8 6.1E-19 1.3E-23 169.6 14.0 153 1-159 71-226 (518)
16 PRK11183 D-lactate dehydrogena 99.8 3.4E-18 7.4E-23 170.5 12.1 155 1-159 60-274 (564)
17 KOG1233 Alkyl-dihydroxyacetone 99.7 2.8E-16 6.1E-21 148.5 11.9 153 1-154 182-343 (613)
18 PRK14652 UDP-N-acetylenolpyruv 99.7 4.1E-16 9E-21 148.2 10.1 137 1-151 57-196 (302)
19 PRK12436 UDP-N-acetylenolpyruv 99.6 4.5E-16 9.7E-21 148.3 9.5 138 1-150 58-197 (305)
20 TIGR00179 murB UDP-N-acetyleno 99.6 5E-16 1.1E-20 146.7 9.2 138 1-149 34-174 (284)
21 PRK13906 murB UDP-N-acetylenol 99.6 7.8E-16 1.7E-20 146.7 9.9 138 1-150 58-197 (307)
22 KOG1262 FAD-binding protein DI 99.6 2.6E-16 5.7E-21 148.9 5.9 125 28-154 105-232 (543)
23 KOG1232 Proteins containing th 99.6 3.2E-15 7E-20 141.1 9.8 152 1-154 111-269 (511)
24 PRK13903 murB UDP-N-acetylenol 99.6 4.6E-15 1E-19 143.8 11.1 138 2-151 55-197 (363)
25 PRK14649 UDP-N-acetylenolpyruv 99.5 6.4E-14 1.4E-18 132.9 9.5 141 1-151 42-193 (295)
26 PRK14653 UDP-N-acetylenolpyruv 99.3 1.2E-11 2.6E-16 117.3 10.3 135 3-151 56-194 (297)
27 COG0812 MurB UDP-N-acetylmuram 99.1 4.1E-10 8.8E-15 105.4 10.5 139 2-150 43-183 (291)
28 PRK14650 UDP-N-acetylenolpyruv 99.1 4.5E-10 9.8E-15 106.4 9.0 139 2-151 55-195 (302)
29 PRK00046 murB UDP-N-acetylenol 99.1 3.6E-10 7.9E-15 108.6 8.0 138 1-150 42-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 98.9 3.3E-09 7.1E-14 102.2 9.4 142 2-151 52-237 (354)
31 PRK14651 UDP-N-acetylenolpyruv 98.8 1E-08 2.2E-13 95.9 8.7 133 3-151 37-171 (273)
32 PRK13904 murB UDP-N-acetylenol 98.6 9.2E-08 2E-12 88.7 7.1 129 3-151 31-160 (257)
33 PRK09799 putative oxidoreducta 77.0 5 0.00011 37.4 5.4 53 6-60 25-78 (258)
34 TIGR02963 xanthine_xdhA xanthi 73.9 5.8 0.00012 40.4 5.3 58 6-63 214-273 (467)
35 TIGR03312 Se_sel_red_FAD proba 70.4 8.7 0.00019 35.8 5.3 51 6-59 24-76 (257)
36 PF00941 FAD_binding_5: FAD bi 69.6 3.7 8.1E-05 35.7 2.5 56 5-60 23-80 (171)
37 TIGR03199 pucC xanthine dehydr 66.1 6.6 0.00014 36.7 3.6 54 6-59 17-73 (264)
38 TIGR03195 4hydrxCoA_B 4-hydrox 60.4 10 0.00022 36.7 3.7 53 7-59 27-81 (321)
39 PRK09971 xanthine dehydrogenas 59.4 9.6 0.00021 36.2 3.4 54 6-59 26-82 (291)
40 PF08031 BBE: Berberine and be 54.0 2.3 5.1E-05 28.7 -1.3 15 322-336 1-15 (47)
41 PLN02906 xanthine dehydrogenas 50.7 21 0.00046 41.1 4.9 58 6-63 250-309 (1319)
42 PLN00192 aldehyde oxidase 41.5 43 0.00093 38.8 5.5 57 6-63 259-316 (1344)
43 TIGR02969 mam_aldehyde_ox alde 40.6 44 0.00096 38.6 5.4 57 6-62 258-316 (1330)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=99.97 E-value=1.7e-30 Score=261.22 Aligned_cols=152 Identities=22% Similarity=0.294 Sum_probs=136.9
Q ss_pred CCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCC-------eEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEe-cc
Q 045207 2 HGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSS-------INVDVENEIACVQSSATIGQLYYKIAEKSKILAFL-AG 73 (350)
Q Consensus 2 ~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~-------i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~-~g 73 (350)
++++|++||+|||+.|++...+ |++|||++||+ +++|.+..+|+|++|++|.+|.+++.++| ++++ .+
T Consensus 89 ~~~~V~~rGgGHS~~G~a~~~~--GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~ 164 (525)
T PLN02441 89 SPLTVAARGHGHSLNGQAQAPG--GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWT 164 (525)
T ss_pred CCceEEEECCCcCCCCCccCCC--eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCcc
Confidence 5789999999999999887654 89999999999 37889999999999999999999999987 4332 35
Q ss_pred CCCcceeccccccCccCCccccccchhhceeEEEEEccCCcEEe-ccCCCcchhhhhhhcCCCceEEEEEEEEEEeecCc
Q 045207 74 ICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQ 152 (350)
Q Consensus 74 ~~~~vgv~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~ 152 (350)
.+..+++||.++++|.|..+.+||..+|+|++++||+++|++++ ++++|+|||||+|||+ |+|||||++|+|++|+|+
T Consensus 165 d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~ 243 (525)
T PLN02441 165 DYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPK 243 (525)
T ss_pred ccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCC
Confidence 66788999999999999999999999999999999999999998 8888999999999998 899999999999999998
Q ss_pred eEEEEE
Q 045207 153 TVTVFT 158 (350)
Q Consensus 153 ~~~~~~ 158 (350)
....+.
T Consensus 244 ~v~~~~ 249 (525)
T PLN02441 244 RVRWIR 249 (525)
T ss_pred ceEEEE
Confidence 655433
No 2
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.96 E-value=6.2e-29 Score=249.85 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=133.4
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEe-ccCCCcc
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFL-AGICHSV 78 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~-~g~~~~v 78 (350)
+++++|+++|+|||+++.+... +.+|||++||+| ++|+++++|+||||+++.+|.++|.++| ++++ .|+++.+
T Consensus 83 ~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~~L~~~L~~~G--lal~n~gsi~~~ 157 (541)
T TIGR01676 83 EKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQAGIRVQQLVDAIKEYG--ITLQNFASIREQ 157 (541)
T ss_pred HcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEcCCCCHHHHHHHHHHcC--CEeccCCCCCCc
Confidence 3688999999999999987764 458999999996 9999999999999999999999999987 4554 4889999
Q ss_pred eeccccccCccCCccccccchhhceeEEEEEccCCcEEe-ccCCCcchhhhhhhcCCCceEEEEEEEEEEeecCceE
Q 045207 79 GVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTV 154 (350)
Q Consensus 79 gv~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~~ 154 (350)
+|||++++|+||... +||..+|+|++++||+++|++++ ++.+++|||||+|||+ |+|||||++|||+.|++...
T Consensus 158 TIGGaiatgtHGtg~-~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~Aargsl-G~LGVItevTLr~~Pa~~l~ 232 (541)
T TIGR01676 158 QIGGIIQVGAHGTGA-KLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFFLARCGL-GGLGVVAEVTLQCVERQELV 232 (541)
T ss_pred eEccccccCCcCCCC-CCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHHHHhcCC-CceEeEEEEEEEEEecccee
Confidence 999999999999865 69999999999999999999997 7778999999999999 89999999999999998643
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.96 E-value=5.9e-29 Score=253.10 Aligned_cols=152 Identities=22% Similarity=0.290 Sum_probs=136.1
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcce
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVG 79 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vg 79 (350)
++++|+++||||||+.|.+... +++++|||++||+| ++|+++++|+||||+++.+|+++|.++| +.+|...++.++
T Consensus 155 ~~~ipv~prGgGts~~G~~~~~-~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~G--l~~p~~p~~~~T 231 (555)
T PLN02805 155 KYKVPIVPYGGATSIEGHTLAP-HGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYG--LFFPLDPGPGAT 231 (555)
T ss_pred HCCCcEEEECCCCCCCCCccCC-CCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcC--CEeCCCCccccC
Confidence 4789999999999999887754 35899999999997 6999999999999999999999999987 567776677789
Q ss_pred eccccccCccCCccccccchhhceeEEEEEccCCcEEe--cc----CCCcchhhhhhhcCCCceEEEEEEEEEEeecCce
Q 045207 80 VDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD--RE----SMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQT 153 (350)
Q Consensus 80 v~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~--~~----~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~ 153 (350)
|||+++++++|..+.+||.++|+|++++||++||++++ +. ..++||||+++|++ |+|||||++|||++|.|+.
T Consensus 232 IGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~Gse-GtLGIIT~~tlrl~p~P~~ 310 (555)
T PLN02805 232 IGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSE-GTLGVITEVTLRLQKIPQH 310 (555)
T ss_pred hhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCC-CceEEEEEEEEEeecCCcc
Confidence 99999999999999999999999999999999999995 22 24589999999999 8999999999999999985
Q ss_pred EEE
Q 045207 154 VTV 156 (350)
Q Consensus 154 ~~~ 156 (350)
...
T Consensus 311 ~~~ 313 (555)
T PLN02805 311 SVV 313 (555)
T ss_pred eEE
Confidence 543
No 4
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.96 E-value=1.2e-28 Score=237.88 Aligned_cols=151 Identities=21% Similarity=0.291 Sum_probs=130.6
Q ss_pred CCCceEEEEcCCC-CcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEec-cCCCc
Q 045207 1 KHGLEIRVRGGGH-YFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFLA-GICHS 77 (350)
Q Consensus 1 ~~~~~~~~~ggGh-s~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~-g~~~~ 77 (350)
++++||++||||| ++.+.+. + +++|||++||+| ++|++.++|+||||+++.+|.++|.++|..+.+.+ ..++.
T Consensus 16 ~~~~~v~~~GgGt~~~~g~~~--~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~lp~~p~~~~~~ 91 (352)
T PRK11282 16 ADGTPLRIRGGGSKDFYGRAL--A--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQMLPFEPPHFGGG 91 (352)
T ss_pred HCCCeEEEECCCCCCCCCCCC--C--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCeeCCCCCCcCCC
Confidence 4789999999996 5566532 2 689999999997 99999999999999999999999999886554433 34556
Q ss_pred ceeccccccCccCCccccccchhhceeEEEEEccCCcEEe-cc-----CCCcchhhhhhhcCCCceEEEEEEEEEEeecC
Q 045207 78 VGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RE-----SMGEDLFWAILVGGGASFGVIIAWKIKLVTVP 151 (350)
Q Consensus 78 vgv~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~-----~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~ 151 (350)
.+|||++++|++|+.+.+||..+|+|+++++|++||++++ .. ..++||||+++|+. |+|||||++|||++|.|
T Consensus 92 ~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-GtLGVitevtlkl~P~p 170 (352)
T PRK11282 92 ATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GTLGVLLEVSLKVLPRP 170 (352)
T ss_pred cEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-chhhhheEEEEEEEecC
Confidence 8899999999999999999999999999999999999996 22 24689999999999 99999999999999999
Q ss_pred ceEEE
Q 045207 152 QTVTV 156 (350)
Q Consensus 152 ~~~~~ 156 (350)
+....
T Consensus 171 ~~~~t 175 (352)
T PRK11282 171 RAELT 175 (352)
T ss_pred ceEEE
Confidence 76443
No 5
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.96 E-value=1.9e-28 Score=243.84 Aligned_cols=150 Identities=23% Similarity=0.324 Sum_probs=135.1
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEe-ccCCCcc
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFL-AGICHSV 78 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~-~g~~~~v 78 (350)
++++||+++|+|||+++.+..+ +++|||++||+| ++|+++++|+||||+++.+|.+.|.++|+ +++ .|+++.+
T Consensus 36 ~~~~~v~v~G~GhS~s~~~~~~---gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~~L~~~L~~~Gl--~l~~~g~~~~~ 110 (438)
T TIGR01678 36 EQKKKVKVVGGGHSPSDIACTD---GFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQLHEQLDEHGY--SMSNLGSISEV 110 (438)
T ss_pred HCCCeEEEECCCCCCCCCccCC---eEEEEhhhcCCceEEcCCCCEEEEcCCCCHHHHHHHHHHcCC--EecCCCCCCCc
Confidence 3688999999999999866543 799999999997 99999999999999999999999999874 455 5889999
Q ss_pred eeccccccCccCCccccccchhhceeEEEEEccCCcEEe-ccCCCcchhhhhhhcCCCceEEEEEEEEEEeecCceEEEE
Q 045207 79 GVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVF 157 (350)
Q Consensus 79 gv~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~~~~~ 157 (350)
+|||++++|++|. +.+||..+|+|+++++|++||++++ ++++++|||||.+|+. |+|||||++|||++|........
T Consensus 111 TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a~~~~~-G~lGIIt~vtl~l~p~~~l~~~~ 188 (438)
T TIGR01678 111 SVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQAARVSL-GCLGIIVTVTIQVVPQFHLQETS 188 (438)
T ss_pred eeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHHHhcCC-CceEeeEEEEEEEEeccceEEEE
Confidence 9999999999996 6889999999999999999999998 7778999999999998 89999999999999987654433
No 6
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.96 E-value=4.4e-28 Score=240.52 Aligned_cols=144 Identities=22% Similarity=0.351 Sum_probs=128.9
Q ss_pred eEEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEe-ccCCCcceecc
Q 045207 5 EIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFL-AGICHSVGVDG 82 (350)
Q Consensus 5 ~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~-~g~~~~vgv~G 82 (350)
||+++|+|||+++.+.. ++++|||++||+| ++|+++++|+||||+++.+|.++|.++|+ .++ .+.+..++|||
T Consensus 34 ~v~~~G~Ghs~~~~~~~---~g~~idl~~l~~i~~~d~~~~~v~v~aG~~l~~l~~~L~~~G~--~l~~~~~~~~~tvGG 108 (419)
T TIGR01679 34 PVRAVGSGHSFTDLACT---DGTMISLTGLQGVVDVDQPTGLATVEAGTRLGALGPQLAQRGL--GLENQGDIDPQSIGG 108 (419)
T ss_pred CEEEEeCCCCCCCcccC---CCEEEEhhHcCCceeecCCCCEEEEcCCCCHHHHHHHHHHcCC--ccccCCCCCCceecc
Confidence 79999999999986653 2799999999997 89999999999999999999999999875 344 36677789999
Q ss_pred ccccCccCCccccccchhhceeEEEEEccCCcEEe-ccCCCcchhhhhhhcCCCceEEEEEEEEEEeecCceEE
Q 045207 83 HFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVT 155 (350)
Q Consensus 83 ~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~~~ 155 (350)
.+.+|++|.. .+||..+|+|++++||++||++++ ++++++|||||+|||+ |+|||||++|||++|.+....
T Consensus 109 ~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a~~g~~-G~lGVIt~vtl~~~p~~~~~~ 180 (419)
T TIGR01679 109 ALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLAARVSL-GALGVISQVTLQTVALFRLRR 180 (419)
T ss_pred ceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHHHHhCC-CceEEEEEEEEEeecceEeEE
Confidence 9999999975 579999999999999999999998 7778999999999998 899999999999999876443
No 7
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.95 E-value=7e-28 Score=243.49 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=134.4
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcce
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVG 79 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vg 79 (350)
++++||++||+||++.+.+.+.. ++++|||++||+| ++|+++++|+||||+++.+|+++|.++|+.+.+.+++....+
T Consensus 77 ~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~t 155 (499)
T PRK11230 77 RLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACS 155 (499)
T ss_pred HcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccce
Confidence 47899999999999987666542 4899999999997 899999999999999999999999998753332344555678
Q ss_pred eccccccCccCCccccccchhhceeEEEEEccCCcEEe-cc----CCCcchhhhhhhcCCCceEEEEEEEEEEeecCceE
Q 045207 80 VDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RE----SMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTV 154 (350)
Q Consensus 80 v~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~----~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~~ 154 (350)
|||++++++.|+.+.+||...|+|++++||++||++++ +. ..++||+|+++|++ |+|||||++|||++|.|+..
T Consensus 156 vGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs~-GtlGIIt~atlkl~p~p~~~ 234 (499)
T PRK11230 156 IGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALFTGSE-GMLGVVTEVTVKLLPKPPVA 234 (499)
T ss_pred EcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhhccCC-CccEEEEEEEEEEEcCCcce
Confidence 99999999999999999999999999999999999997 32 24789999999999 89999999999999999865
Q ss_pred EE
Q 045207 155 TV 156 (350)
Q Consensus 155 ~~ 156 (350)
..
T Consensus 235 ~~ 236 (499)
T PRK11230 235 RV 236 (499)
T ss_pred EE
Confidence 43
No 8
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.95 E-value=5.6e-27 Score=238.26 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=133.8
Q ss_pred CCCceEEEEc-CCCCcCCCccccC-CCeEEEEcCCCCC-eEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEec-cCCC
Q 045207 1 KHGLEIRVRG-GGHYFEGVSYVSN-VPLIIIDLINLSS-INVDVENEIACVQSSATIGQLYYKIAEKSKILAFLA-GICH 76 (350)
Q Consensus 1 ~~~~~~~~~g-gGhs~~g~~~~~~-~~gividl~~~~~-i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~-g~~~ 76 (350)
++++||+++| +|||+.+.+.... +++++|||++||+ |++|.++++|+||||+++.+|.+.|.++| ++++. +.+.
T Consensus 53 ~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~G--lal~~~~~~~ 130 (557)
T TIGR01677 53 AAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAG--LALPYAPYWW 130 (557)
T ss_pred HCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcC--CEeccCCCCC
Confidence 4689999996 6999987655432 2369999999999 69999999999999999999999999987 45555 4566
Q ss_pred cceeccccccCccCCcc-ccccchhhceeEEEEEccCC------cEEe-ccCCCcchhhhhhhcCCCceEEEEEEEEEEe
Q 045207 77 SVGVDGHFSGRGYGLLL-RKYGLAADHVVDAHLIDVEG------RFLD-RESMGEDLFWAILVGGGASFGVIIAWKIKLV 148 (350)
Q Consensus 77 ~vgv~G~~~gGg~G~~s-~~~G~~~d~v~~~~vV~a~G------~~~~-~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~ 148 (350)
.++|||.+++|++|... ++||+.+|+|++++||++|| ++++ +..+++|||||+||++ |+|||||++|||++
T Consensus 131 ~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~ 209 (557)
T TIGR01677 131 GLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVSL-GVLGVISQVTLALQ 209 (557)
T ss_pred CeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccCC-CccEeeeEEEEEEE
Confidence 78999999999999866 68999999999999999999 7777 7778999999999999 89999999999999
Q ss_pred ecCceEEEEEe
Q 045207 149 TVPQTVTVFTI 159 (350)
Q Consensus 149 p~~~~~~~~~~ 159 (350)
|.+.....+..
T Consensus 210 P~~~~~~~~~~ 220 (557)
T TIGR01677 210 PMFKRSVTYTM 220 (557)
T ss_pred ccccceEEEEc
Confidence 98765444443
No 9
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.95 E-value=5.6e-27 Score=232.50 Aligned_cols=153 Identities=21% Similarity=0.302 Sum_probs=133.2
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcce
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVG 79 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vg 79 (350)
++++||++||+|||+.+.+.+.+ ++++|||++||+| ++|+++++|+||||+++.+|.++|.++|+.+.+-+++....+
T Consensus 19 ~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~~~gl~~~~~p~s~~~~t 97 (413)
T TIGR00387 19 EHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVEEHNLFYPPDPSSQISST 97 (413)
T ss_pred HcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCcccccce
Confidence 47899999999999987666543 5899999999997 999999999999999999999999998753322334555678
Q ss_pred eccccccCccCCccccccchhhceeEEEEEccCCcEEe-c-----cCCCcchhhhhhhcCCCceEEEEEEEEEEeecCce
Q 045207 80 VDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-R-----ESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQT 153 (350)
Q Consensus 80 v~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~-----~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~ 153 (350)
|||++.+++.|..+.+||...|+|++++||++||++++ . ...++||+|.++|+. |+|||||+++||++|.|+.
T Consensus 98 iGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~-GtlGiit~~~lkl~p~p~~ 176 (413)
T TIGR00387 98 IGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE-GTLGIVTEATLKLLPKPEN 176 (413)
T ss_pred ehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC-ccceEEEEEEEEeecCCCc
Confidence 99999999999999999999999999999999999996 3 234579999999999 8999999999999999986
Q ss_pred EE
Q 045207 154 VT 155 (350)
Q Consensus 154 ~~ 155 (350)
..
T Consensus 177 ~~ 178 (413)
T TIGR00387 177 IV 178 (413)
T ss_pred cE
Confidence 44
No 10
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.94 E-value=1.2e-26 Score=232.53 Aligned_cols=151 Identities=25% Similarity=0.404 Sum_probs=133.7
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcce
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVG 79 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vg 79 (350)
++++||++||+|||+.|.+.+. . +++|||++||+| ++|+++++|+||||+++.+|.++|.++|+.+.+.+++...++
T Consensus 53 ~~~~~v~prG~gts~~g~~~~~-~-gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~t 130 (459)
T COG0277 53 ENGIPVVPRGGGTSLSGGAVPD-G-GVVLDLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTAT 130 (459)
T ss_pred HcCCeEEEECCCCCccccccCC-C-cEEEEchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccce
Confidence 4789999999999999988766 3 899999999998 799999999999999999999999998754433334444799
Q ss_pred eccccccCccCCccccccchhhceeEEEEEccCCcEEe-cc-----CCCcchhhhhhhcCCCceEEEEEEEEEEeecCce
Q 045207 80 VDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RE-----SMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQT 153 (350)
Q Consensus 80 v~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~-----~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~ 153 (350)
|||+++++++|..+.+||.+.|+|+++++|++||++++ .. ....||+++..|+. |+|||||++|+|++|.|+.
T Consensus 131 IGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~-GtlGiit~~tl~l~p~~~~ 209 (459)
T COG0277 131 IGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALFVGSE-GTLGIITEATLKLLPLPET 209 (459)
T ss_pred EccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHhcccCC-ccceEEEEEEEEeccCCch
Confidence 99999999999999999999999999999999999996 22 34479999999998 8999999999999998865
Q ss_pred E
Q 045207 154 V 154 (350)
Q Consensus 154 ~ 154 (350)
.
T Consensus 210 ~ 210 (459)
T COG0277 210 K 210 (459)
T ss_pred h
Confidence 4
No 11
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.93 E-value=7.1e-25 Score=222.15 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=131.3
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEec-cCCCcc
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFLA-GICHSV 78 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~-g~~~~v 78 (350)
++++||+++|+|||+.+.+..+ +.+|||++|++| ++|+++++|+||||+++.+|.+.|.++| ++++. +++...
T Consensus 118 ~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~AG~~l~~L~~~L~~~G--Lal~n~g~I~~~ 192 (573)
T PLN02465 118 EKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQAGARVQQVVEALRPHG--LTLQNYASIREQ 192 (573)
T ss_pred HcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEccCCCHHHHHHHHHHcC--CEeccCCCCCCe
Confidence 3689999999999999877654 357899999996 9999999999999999999999999987 45554 677788
Q ss_pred eeccccccCccCCccccccchhhceeEEEEEccCCcEEe-ccCCCcchhhhhhhcCCCceEEEEEEEEEEeecCceE
Q 045207 79 GVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTV 154 (350)
Q Consensus 79 gv~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~~ 154 (350)
+|||++.+|+||... .+|..+|+|++++||+++|++++ +.++++||||+.|++. |.|||||++|||+.|.+...
T Consensus 193 TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~aar~gl-G~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 193 QIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFRLARCGL-GGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred eecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHHhHhhccC-CCCcEEEEEEEEEEecCceE
Confidence 999999999999865 58999999999999999999997 7778899999999998 89999999999999998643
No 12
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.88 E-value=7e-23 Score=173.09 Aligned_cols=115 Identities=34% Similarity=0.542 Sum_probs=102.8
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCC-eEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcce
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSS-INVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVG 79 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~-i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vg 79 (350)
++++|++++|+||++.+.+... ++++|||++|++ +++|+++++++||||+++.||+++|.++++.+.+.++.+..++
T Consensus 22 ~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~~t 99 (139)
T PF01565_consen 22 ENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEALAPRGLMLPVEPGSGIPGT 99 (139)
T ss_dssp HTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHHHHHHTEEESSGGGSTTTSB
T ss_pred HcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcccccccccccccccccccccce
Confidence 4689999999999999777633 499999999999 6899999999999999999999999988743333478888899
Q ss_pred eccccccCccCCccccccchhhceeEEEEEccCCcEEe
Q 045207 80 VDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD 117 (350)
Q Consensus 80 v~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~ 117 (350)
+||++++|++|..++.||..+|+|+++++|++||++++
T Consensus 100 vGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 100 VGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred EchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99999999999999999999999999999999999986
No 13
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.88 E-value=1.9e-22 Score=193.54 Aligned_cols=147 Identities=21% Similarity=0.333 Sum_probs=126.5
Q ss_pred CceEEEEcCCCCcCCCccccCCCeEEEEcC---CCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcc
Q 045207 3 GLEIRVRGGGHYFEGVSYVSNVPLIIIDLI---NLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSV 78 (350)
Q Consensus 3 ~~~~~~~ggGhs~~g~~~~~~~~gividl~---~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~v 78 (350)
++||++||+|||..|++.... +|++|.|+ .|+++ .+..+...|.|+||..|-||.+++.++|..-.++.-.. ..
T Consensus 89 ~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl-~l 166 (505)
T KOG1231|consen 89 NFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYL-PL 166 (505)
T ss_pred cceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCcc-ce
Confidence 689999999999999988743 48777665 35555 56777799999999999999999999874212232223 37
Q ss_pred eeccccccCccCCccccccchhhceeEEEEEccCCcEEe-ccCCCcchhhhhhhcCCCceEEEEEEEEEEeecCc
Q 045207 79 GVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQ 152 (350)
Q Consensus 79 gv~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~ 152 (350)
+|||.++.+|+|-...+||...+||++++||+++|++++ ++..|++||.++.||. |+|||||++++|++|+|.
T Consensus 167 tVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 167 TVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeeeeeeccC-cceeeEEEEEEEeccCCc
Confidence 899999999999999999999999999999999999997 7789999999999999 899999999999999994
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=5.5e-20 Score=174.92 Aligned_cols=139 Identities=19% Similarity=0.184 Sum_probs=114.7
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCC-CCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcce
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLIN-LSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVG 79 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~-~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vg 79 (350)
++++|+.++|+|||........ ++++|||++ |+.|++ ++.+|+||||+++.+|.++|.++|+ .|.+..++
T Consensus 52 ~~~~p~~v~GgGsnll~~d~g~--~gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~~L~~~l~~~Gl-----~gle~~~g 122 (298)
T PRK13905 52 ENNIPVTVLGNGSNLLVRDGGI--RGVVIRLGKGLNEIEV--EGNRITAGAGAPLIKLARFAAEAGL-----SGLEFAAG 122 (298)
T ss_pred HcCCCEEEEeCCceEEecCCCc--ceEEEEecCCcceEEe--cCCEEEEECCCcHHHHHHHHHHcCC-----CcchhccC
Confidence 3689999999999975322111 389999998 998844 4679999999999999999999874 35566677
Q ss_pred eccccccCccCCcccccc-chhhceeEEEEEccCCcEEeccCCCcchhhhhhhcCCC-ceEEEEEEEEEEeecC
Q 045207 80 VDGHFSGRGYGLLLRKYG-LAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGA-SFGVIIAWKIKLVTVP 151 (350)
Q Consensus 80 v~G~~~gGg~G~~s~~~G-~~~d~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~g-~~Givt~~t~k~~p~~ 151 (350)
+.| ++||++.++++.|| ..+|+|+++++|++||++++. .+.|++|++|++.+. .+||||+++||++|..
T Consensus 123 ipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~--~~~e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 123 IPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTL--SNEELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEE--EHHHcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 777 78888888888898 799999999999999999973 134999999998743 3899999999999974
No 15
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.80 E-value=6.1e-19 Score=169.61 Aligned_cols=153 Identities=22% Similarity=0.253 Sum_probs=134.2
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEec-cCCCcc
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFLA-GICHSV 78 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~-g~~~~v 78 (350)
++++++++.|.|||..+.++.+ |++|+++.||++ ++|++.++||||+|+++.||++++.+.| +++|. ++...+
T Consensus 71 ~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~~~~G--lsL~~~~si~e~ 145 (518)
T KOG4730|consen 71 EAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEELAKLG--LSLPNAPSISEQ 145 (518)
T ss_pred HcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEeccCcCHHHHHHHHHhcC--ccccCCCceecc
Confidence 4789999999999999988765 699999999995 8999999999999999999999999976 55554 788889
Q ss_pred eeccccccCccCCccccccchhhceeEEEEEccCCcEEe-ccCCCcchhhhhhhcCCCceEEEEEEEEEEeecCceEEEE
Q 045207 79 GVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTVTVF 157 (350)
Q Consensus 79 gv~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~~~~~ 157 (350)
.|||++..|.||...+.|+.....++...++.++|.++. ++..+||+|.|.+-+. |.+|||.++||++.|.-+....+
T Consensus 146 sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~ 224 (518)
T KOG4730|consen 146 SVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAKVSL-GVLGVISQVTLSVVPAFKRSLTY 224 (518)
T ss_pred eeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhhhcc-cceeEEEEEEEEEEecceeeeEE
Confidence 999999999999888767777777777777789999887 8888999999999999 89999999999999987765554
Q ss_pred Ee
Q 045207 158 TI 159 (350)
Q Consensus 158 ~~ 159 (350)
.+
T Consensus 225 ~v 226 (518)
T KOG4730|consen 225 VV 226 (518)
T ss_pred EE
Confidence 44
No 16
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.76 E-value=3.4e-18 Score=170.52 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=125.4
Q ss_pred CCCceEEEEcCCCCcCCCccccCC----CeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCC
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNV----PLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGIC 75 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~----~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~ 75 (350)
++++||++||||+++.|.+++..+ ++|+|||++||+| +|| ++++|+||||+++.+|.++|.++|+......|+|
T Consensus 60 e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS 138 (564)
T PRK11183 60 AADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSS 138 (564)
T ss_pred HcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCccccc
Confidence 479999999999999988887543 3899999999997 688 5689999999999999999999875322111332
Q ss_pred -CcceeccccccCccCCccccccchhhceeEEEEEccCCcE-------Ee--c-c--------CC---------------
Q 045207 76 -HSVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRF-------LD--R-E--------SM--------------- 121 (350)
Q Consensus 76 -~~vgv~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~-------~~--~-~--------~~--------------- 121 (350)
-..+|+|.++.+.-|....+||...++++. ++|+++|++ ++ . . ..
T Consensus 139 ~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~ 217 (564)
T PRK11183 139 CIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHAS 217 (564)
T ss_pred ccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCc
Confidence 234688999999999999999999999999 999999999 32 1 1 01
Q ss_pred -------------------Ccchhhhh--hhcCCCceEEEEEEEEEEeecCceEEEEEe
Q 045207 122 -------------------GEDLFWAI--LVGGGASFGVIIAWKIKLVTVPQTVTVFTI 159 (350)
Q Consensus 122 -------------------~~dLfwa~--rG~g~g~~Givt~~t~k~~p~~~~~~~~~~ 159 (350)
|.|+...+ .|+. |.+||+ +++++++|+|+....|-+
T Consensus 218 d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~vf~i 274 (564)
T PRK11183 218 DHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQVFYI 274 (564)
T ss_pred hhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcceEEEE
Confidence 22776666 8999 899999 999999999987766655
No 17
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.68 E-value=2.8e-16 Score=148.54 Aligned_cols=153 Identities=24% Similarity=0.302 Sum_probs=127.6
Q ss_pred CCCceEEEEcCCCCcCC-CccccCCC--eEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCC
Q 045207 1 KHGLEIRVRGGGHYFEG-VSYVSNVP--LIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICH 76 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g-~~~~~~~~--gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~ 76 (350)
+|++-+.+.|||+|.++ ..++.+.. -+.+|++.||+| =+|.++-|+++|+|+.-.+|.+.|.++|+...--+-+..
T Consensus 182 khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~E 261 (613)
T KOG1233|consen 182 KHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIE 261 (613)
T ss_pred hcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCCcee
Confidence 57889999999999874 33333222 567889999997 589999999999999999999999998742211223333
Q ss_pred cceeccccccCccCCccccccchhhceeEEEEEccCCcEEe-----ccCCCcchhhhhhhcCCCceEEEEEEEEEEeecC
Q 045207 77 SVGVDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD-----RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVP 151 (350)
Q Consensus 77 ~vgv~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~-----~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~ 151 (350)
-.++||+++....|+--..||...|-|+.+++|+|.|.+-. .-+..||+..-+.|+. |++||||++|+|+.|+|
T Consensus 262 FSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~GPDihh~IlGSE-GTLGVitEvtiKirPiP 340 (613)
T KOG1233|consen 262 FSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSGPDIHHIILGSE-GTLGVITEVTIKIRPIP 340 (613)
T ss_pred eecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCCCCcceEEeccC-cceeEEEEEEEEEeech
Confidence 46799999999999999999999999999999999998873 2346899999999999 89999999999999999
Q ss_pred ceE
Q 045207 152 QTV 154 (350)
Q Consensus 152 ~~~ 154 (350)
+..
T Consensus 341 e~~ 343 (613)
T KOG1233|consen 341 EVK 343 (613)
T ss_pred hhh
Confidence 754
No 18
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.65 E-value=4.1e-16 Score=148.24 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=110.3
Q ss_pred CCCceEEEEcCCCCcCCCccccC-CCeEEEEcCC-CCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcc
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSN-VPLIIIDLIN-LSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSV 78 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~-~~gividl~~-~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~v 78 (350)
++++|+.++|||||..- .++ -++++|||++ ++.+.++ +.+++||||+.+.+|.+++.++|+ .|.+..+
T Consensus 57 ~~~ip~~vlGgGSNllv---~d~g~~gvVI~l~~~~~~i~~~--~~~v~v~AG~~~~~L~~~~~~~GL-----~GlE~l~ 126 (302)
T PRK14652 57 ELGVPLSILGGGANTLV---ADAGVRGVVLRLPQDFPGESTD--GGRLVLGAGAPISRLPARAHAHGL-----VGMEFLA 126 (302)
T ss_pred HCCCcEEEEcCCcceee---cCCCEeeEEEEecCCcceEEec--CCEEEEECCCcHHHHHHHHHHcCC-----ccccccc
Confidence 36899999999999742 121 1279999976 5556543 569999999999999999999873 3788889
Q ss_pred eeccccccCccCCccc-cccchhhceeEEEEEccCCcEEeccCCCcchhhhhhhcCCCceEEEEEEEEEEeecC
Q 045207 79 GVDGHFSGRGYGLLLR-KYGLAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVP 151 (350)
Q Consensus 79 gv~G~~~gGg~G~~s~-~~G~~~d~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~ 151 (350)
|+.| +.||+..++++ ++|.++|+|+++++|+++| .++- ...|+.|++|++.-+..||||+++||++|..
T Consensus 127 gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~--~~~e~~f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 127 GIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFV--PAAALGYAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred CCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEe--ehhhcCcccceeccCCCeEEEEEEEEEecCC
Confidence 9988 99999999986 6778999999999999999 4432 2359999999874233489999999999964
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=4.5e-16 Score=148.28 Aligned_cols=138 Identities=15% Similarity=0.144 Sum_probs=106.4
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCccee
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGV 80 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgv 80 (350)
++++|+.++|+|||+....-.. ++++|||++|++|+++ ..+++||||+.+.+|.+++.++|+ .|.....|+
T Consensus 58 ~~~ip~~v~GgGSNll~~d~g~--~GvvI~l~~l~~i~~~--~~~v~v~aG~~~~~L~~~~~~~gl-----~Gle~~~gi 128 (305)
T PRK12436 58 KYNIPVTFLGNGSNVIIKDGGI--RGITVSLIHITGVTVT--GTTIVAQCGAAIIDVSRIALDHNL-----TGLEFACGI 128 (305)
T ss_pred HcCCCEEEEcCCeEEEEeCCCe--eEEEEEeCCcCcEEEe--CCEEEEEeCCcHHHHHHHHHHcCC-----ccchhhcCC
Confidence 4689999999999986211111 2899999989998776 468999999999999999999874 133333344
Q ss_pred ccccccCccCCcccccc-chhhceeEEEEEccCCcEEeccCCCcchhhhhhhcCC-CceEEEEEEEEEEeec
Q 045207 81 DGHFSGRGYGLLLRKYG-LAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGG-ASFGVIIAWKIKLVTV 150 (350)
Q Consensus 81 ~G~~~gGg~G~~s~~~G-~~~d~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~-g~~Givt~~t~k~~p~ 150 (350)
.| +.||+..++++.|| ...|.+.+++||++||++++. ++.|+.|++|.+.. .+..||++++||+.+.
T Consensus 129 PG-tVGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~--~~~e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 129 PG-SVGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTL--TKEAFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred cc-chhHHHHhcCccchhehheeeeEEEEEeCCCCEEEE--EHHHhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 44 45667777777788 566888899999999999972 23479999998842 2357999999999985
No 20
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.64 E-value=5e-16 Score=146.66 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=115.8
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCccee
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGV 80 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgv 80 (350)
++++|+.++|||||+...+... ++++||+++|+++.+++ ..+++||||+.+.+|.+++.++|+ .|.+..+|+
T Consensus 34 ~~~~p~~vlGgGSNll~~d~~~--~gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~~l~~~~~~~Gl-----~GlE~l~gi 105 (284)
T TIGR00179 34 EEDQPLLILGEGSNLLILDDGR--GGVIINLGKGIDIEDDE-GEYVHVGGGENWHKLVKYALKNGL-----SGLEFLAGI 105 (284)
T ss_pred HcCCCEEEEecceEEEEccCCc--CeEEEECCCCceEEEec-CCEEEEEcCCcHHHHHHHHHHCCC-----cccccCCCC
Confidence 3689999999999987544333 48999999998887776 579999999999999999999873 488999999
Q ss_pred ccccccCccCCccccccchhh-ceeEEEEEccCCcEEeccCCCcchhhhhhhcCCCc-e-EEEEEEEEEEee
Q 045207 81 DGHFSGRGYGLLLRKYGLAAD-HVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGAS-F-GVIIAWKIKLVT 149 (350)
Q Consensus 81 ~G~~~gGg~G~~s~~~G~~~d-~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~g~-~-Givt~~t~k~~p 149 (350)
.| ++||++.++++.||..++ .|+++++|++||++++- .+.|+.|++|-+..-. . .||++++|++.+
T Consensus 106 PG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~--~~~~~~f~YR~S~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 106 PG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWL--TNEQLGFGYRTSIFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred Cc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEE--EHHHccccCCccccCCCCcEEEEEEEEEecc
Confidence 99 899999999999999886 67999999999999972 2348999999775221 2 699999999933
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.63 E-value=7.8e-16 Score=146.67 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=113.6
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCccee
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGV 80 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgv 80 (350)
++++|+.++|+|||.....-.. +|++||+++|++|+++. .+++||||+.+.+|.+++.++|+ .|.+..+|+
T Consensus 58 ~~~ip~~vlGgGSNll~~d~g~--~GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~l~~~~~~~Gl-----~GlE~~~gI 128 (307)
T PRK13906 58 QNEIPVTYLGNGSNIIIREGGI--RGIVISLLSLDHIEVSD--DAIIAGSGAAIIDVSRVARDYAL-----TGLEFACGI 128 (307)
T ss_pred HcCCCEEEEcCceeEeecCCCc--ceEEEEecCccceEEeC--CEEEEECCCcHHHHHHHHHHcCC-----ccchhhcCC
Confidence 3689999999999976221111 38999999999998764 58999999999999999999873 366777789
Q ss_pred ccccccCccCCcccccc-chhhceeEEEEEccCCcEEeccCCCcchhhhhhhcCCCc-eEEEEEEEEEEeec
Q 045207 81 DGHFSGRGYGLLLRKYG-LAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGAS-FGVIIAWKIKLVTV 150 (350)
Q Consensus 81 ~G~~~gGg~G~~s~~~G-~~~d~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~g~-~Givt~~t~k~~p~ 150 (350)
.| +.||+..++++.|| .++|+|+++++|+++|++++. ...|+.|++|.+..-. --||++++||+.|.
T Consensus 129 PG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~--~~~e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 129 PG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKL--TTKELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred Cc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEE--EHHHccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 99 89999999999995 889999999999999999972 2348999999775221 24999999999984
No 22
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.63 E-value=2.6e-16 Score=148.87 Aligned_cols=125 Identities=24% Similarity=0.354 Sum_probs=110.6
Q ss_pred EEEcCCCCC-eEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcceeccccccCccCCccccccchhhceeEE
Q 045207 28 IIDLINLSS-INVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDGHFSGRGYGLLLRKYGLAADHVVDA 106 (350)
Q Consensus 28 vidl~~~~~-i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgv~G~~~gGg~G~~s~~~G~~~d~v~~~ 106 (350)
-|++..|.. +++|.+++||+|||+++++++.++|-+.|+.|++. ....+.++||++.|-|+-..|.+||+..+.+.+.
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeee-cccccceecceeeecccccccchhhhHHhhhhee
Confidence 344543434 58899999999999999999999999998877654 4667788999999999999999999999999999
Q ss_pred EEEccCCcEEe--ccCCCcchhhhhhhcCCCceEEEEEEEEEEeecCceE
Q 045207 107 HLIDVEGRFLD--RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQTV 154 (350)
Q Consensus 107 ~vV~a~G~~~~--~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~~ 154 (350)
|||+|||++++ .+++++|||.|+-.+. |++|..+.+|+|+.|+.+.+
T Consensus 184 EvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 184 EVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLVAATIRIIKVKKYV 232 (543)
T ss_pred EEEecCCeEEEecCCcccCceEEEccccc-CchheeeeeEEEEEeccceE
Confidence 99999999996 4558999999999999 89999999999999998765
No 23
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.60 E-value=3.2e-15 Score=141.10 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=132.7
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcce
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVG 79 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vg 79 (350)
++++.|.|.||-+...|.|++.- +-|||+|.+||+| ++|+-.+++++++||.+.++..+|+++|+.+.+-.|.-.+.-
T Consensus 111 ~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCq 189 (511)
T KOG1232|consen 111 DRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQ 189 (511)
T ss_pred cccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecCCCcccce
Confidence 35788999999999988887764 3699999999997 799999999999999999999999999876655567777777
Q ss_pred eccccccCccCCccccccchhhceeEEEEEccCCcEEe------ccCCCcchhhhhhhcCCCceEEEEEEEEEEeecCce
Q 045207 80 VDGHFSGRGYGLLLRKYGLAADHVVDAHLIDVEGRFLD------RESMGEDLFWAILVGGGASFGVIIAWKIKLVTVPQT 153 (350)
Q Consensus 80 v~G~~~gGg~G~~s~~~G~~~d~v~~~~vV~a~G~~~~------~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~~~ 153 (350)
|||.++..+-|..--+||...-+|+++|+|+|+|+++. ......||=.-..|+. |++||||++++-+.|.|..
T Consensus 190 iGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSE-GtlGVvT~vSil~~~kpks 268 (511)
T KOG1232|consen 190 IGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKS 268 (511)
T ss_pred ecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCC-ceeeEEeeEEEeecCCCcc
Confidence 99999999999888889999999999999999999994 2234568888889999 8999999999999998875
Q ss_pred E
Q 045207 154 V 154 (350)
Q Consensus 154 ~ 154 (350)
+
T Consensus 269 v 269 (511)
T KOG1232|consen 269 V 269 (511)
T ss_pred e
Confidence 4
No 24
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.60 E-value=4.6e-15 Score=143.80 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=107.1
Q ss_pred CCceEEEEcCCCCcCCCccccC-CCeEEEEcCCCCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCccee
Q 045207 2 HGLEIRVRGGGHYFEGVSYVSN-VPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGV 80 (350)
Q Consensus 2 ~~~~~~~~ggGhs~~g~~~~~~-~~gividl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgv 80 (350)
+++|+.++|+|||+.- .++ -+++||+++ ++.++++.+..+|+|++|+.|.+|.+++.++|+ .|....+||
T Consensus 55 ~~~p~~vlGgGSNlLv---~D~g~~GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~~l~~~a~~~GL-----~GlE~laGI 125 (363)
T PRK13903 55 AGEPLLVLGGGSNLVI---ADDGFDGTVVRVA-TRGVTVDCGGGLVRAEAGAVWDDVVARTVEAGL-----GGLECLSGI 125 (363)
T ss_pred CCCCEEEEeCCeeEeE---CCCCccEEEEEeC-CCcEEEeCCCCEEEEEcCCCHHHHHHHHHHcCC-----ccccccCCC
Confidence 6899999999999752 221 238999998 588888866789999999999999999999874 344444555
Q ss_pred ccccccCccCCccccccc-hhhceeEEEEEccC-CcEEeccCCCcchhhhhhhcC--CCceEEEEEEEEEEeecC
Q 045207 81 DGHFSGRGYGLLLRKYGL-AADHVVDAHLIDVE-GRFLDRESMGEDLFWAILVGG--GASFGVIIAWKIKLVTVP 151 (350)
Q Consensus 81 ~G~~~gGg~G~~s~~~G~-~~d~v~~~~vV~a~-G~~~~~~~~~~dLfwa~rG~g--~g~~Givt~~t~k~~p~~ 151 (350)
.| +.||+.-++.+.||. .+|.|.++++++.+ |++++-. +.||+|++|++. +++++|||+++||++|..
T Consensus 126 PG-TVGGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 126 PG-SAGATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred Cc-chhhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 55 345555566666765 57999999999955 9999732 569999999972 135899999999999863
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.50 E-value=6.4e-14 Score=132.93 Aligned_cols=141 Identities=14% Similarity=0.090 Sum_probs=111.0
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCC-CeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcce
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLS-SINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVG 79 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~-~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vg 79 (350)
++++|+.++|+|||+....... +|++|++++++ ++..+.+..+++|++|+.|.+|.+++.++|+ .|....+|
T Consensus 42 ~~~ip~~vlG~GSNlL~~d~g~--~GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~~~l~~~~~~~GL-----~GlE~l~G 114 (295)
T PRK14649 42 QRQLPLFWLGGGSNLLVRDEGF--DGLVARYRGQRWELHEHGDTAEVWVEAGAPMAGTARRLAAQGW-----AGLEWAEG 114 (295)
T ss_pred HCCCCEEEEecceeEEEeCCCc--CeEEEEecCCCcEEEEeCCcEEEEEEcCCcHHHHHHHHHHcCC-----ccccccCC
Confidence 3689999999999986543333 38999998754 6666666569999999999999999999873 56678899
Q ss_pred eccccccCccCCccccc-cchhhceeEEEEEccCCcEEeccCCCcchhhhhhhcCCCc---------eEEEEEEEEEEee
Q 045207 80 VDGHFSGRGYGLLLRKY-GLAADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGAS---------FGVIIAWKIKLVT 149 (350)
Q Consensus 80 v~G~~~gGg~G~~s~~~-G~~~d~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~g~---------~Givt~~t~k~~p 149 (350)
|.| ++||+.=++.+.| +..+|.|+++++++.+|++++- +..||+|++|-+..-. --||++++|++.|
T Consensus 115 IPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~--~~~el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~ 191 (295)
T PRK14649 115 LPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEW--SVHDFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHR 191 (295)
T ss_pred CCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEE--eHHHcCcccceeecccccccccccCCeEEEEEEEEECC
Confidence 999 7888555555555 4788999999999999999972 1239999999874222 1399999999998
Q ss_pred cC
Q 045207 150 VP 151 (350)
Q Consensus 150 ~~ 151 (350)
..
T Consensus 192 ~~ 193 (295)
T PRK14649 192 DD 193 (295)
T ss_pred CC
Confidence 64
No 26
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.30 E-value=1.2e-11 Score=117.27 Aligned_cols=135 Identities=17% Similarity=0.247 Sum_probs=109.5
Q ss_pred CceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcceecc
Q 045207 3 GLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDG 82 (350)
Q Consensus 3 ~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgv~G 82 (350)
++|+.+.|+|+|........ +++||.+++|+.|+++. .+++|+||+.+.+|.+++.++|+ .|....+||.|
T Consensus 56 ~~p~~vlG~GSNlLv~d~g~--~gvVI~l~~~~~i~i~~--~~v~v~AG~~l~~L~~~~~~~GL-----~GlE~l~gIPG 126 (297)
T PRK14653 56 GIEVKILGNGTNVLPKDEPM--DFVVVSTERLDDIFVDN--DKIICESGLSLKKLCLVAAKNGL-----SGFENAYGIPG 126 (297)
T ss_pred CCCEEEEcCCeeEEEecCCc--cEEEEEeCCcCceEEeC--CEEEEeCCCcHHHHHHHHHHCCC-----cchhhhcCCch
Confidence 78999999999976543333 38999997899998873 58999999999999999999874 46666677777
Q ss_pred ccccCccCCccccccc-hhhceeEEEEEccCCcEEeccCCCcchhhhhhhcCCC---ceEEEEEEEEEEeecC
Q 045207 83 HFSGRGYGLLLRKYGL-AADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGA---SFGVIIAWKIKLVTVP 151 (350)
Q Consensus 83 ~~~gGg~G~~s~~~G~-~~d~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~g---~~Givt~~t~k~~p~~ 151 (350)
+.||+.-++.+.||. ..|.|+++++++ +|++++- ...|+-|.+|-+.-. .+ |||+++||+.|..
T Consensus 127 -TVGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~--~~~e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 127 -SVGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRL--GKNEIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred -hHHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEE--chhhccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 588888888999998 889999999999 7877762 233889999976322 23 9999999999964
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=4.1e-10 Score=105.43 Aligned_cols=139 Identities=19% Similarity=0.202 Sum_probs=116.2
Q ss_pred CCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcceec
Q 045207 2 HGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVD 81 (350)
Q Consensus 2 ~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgv~ 81 (350)
+++|+.+.|+|.|.--..-. .++++|.+.+++.++++.+..+++|++|+.|.+|.+.+.++|. .|...-+||.
T Consensus 43 ~~~p~~ilG~GSNlLv~d~g--~~gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~~l~~~~~~~gl-----~GlE~l~gIP 115 (291)
T COG0812 43 EDLPVLILGGGSNLLVRDGG--IGGVVIKLGKLNFIEIEGDDGLIEAGAGAPWHDLVRFALENGL-----SGLEFLAGIP 115 (291)
T ss_pred cCCCEEEEecCceEEEecCC--CceEEEEcccccceeeeccCCeEEEccCCcHHHHHHHHHHcCC-----cchhhhcCCC
Confidence 58999999999996422111 2489999999999888888779999999999999999999873 5777788899
Q ss_pred cccccCccCCccccccc-hhhceeEEEEEccCCcEEeccCCCcchhhhhhhcCCCce-EEEEEEEEEEeec
Q 045207 82 GHFSGRGYGLLLRKYGL-AADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASF-GVIIAWKIKLVTV 150 (350)
Q Consensus 82 G~~~gGg~G~~s~~~G~-~~d~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~g~~-Givt~~t~k~~p~ 150 (350)
| +.||..=++.+.||. ..|.+.++++++.+|++++- ++.||-|++|-+....- .||++++||+.|-
T Consensus 116 G-svGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l--~~~el~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 116 G-SVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWL--SAEELGFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred c-ccchhhhccCcccccchheeEEEEEEEcCCCCEEEE--EHHHhCcccccCcCCCCCEEEEEEEEEeCCC
Confidence 9 788888899999987 66999999999999999972 24489999997753333 8999999999996
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.07 E-value=4.5e-10 Score=106.43 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=111.8
Q ss_pred CCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcceec
Q 045207 2 HGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVD 81 (350)
Q Consensus 2 ~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgv~ 81 (350)
+++|+.+.|+|.|.--..-.. -++++|.+.+|+.++++. ..++|++|+.|.+|.+++.++|+ .|....+||.
T Consensus 55 ~~~p~~vlG~GSNlLv~D~g~-~~g~vi~~~~~~~i~~~~--~~v~a~AG~~~~~l~~~~~~~gl-----~GlE~l~gIP 126 (302)
T PRK14650 55 EKIKIFILGGGSNILINDEEE-IDFPIIYTGHLNKIEIHD--NQIVAECGTNFEDLCKFALQNEL-----SGLEFIYGLP 126 (302)
T ss_pred cCCCEEEEeceeEEEEECCCc-cceEEEEECCcCcEEEeC--CEEEEEeCCcHHHHHHHHHHcCC-----chhhhhcCCC
Confidence 589999999999965221110 127899986799998764 47999999999999999999873 5777888999
Q ss_pred cccccCccCCccccccc-hhhceeEEEEEccCCcEEeccCCCcchhhhhhhcCCCc-eEEEEEEEEEEeecC
Q 045207 82 GHFSGRGYGLLLRKYGL-AADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGAS-FGVIIAWKIKLVTVP 151 (350)
Q Consensus 82 G~~~gGg~G~~s~~~G~-~~d~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~g~-~Givt~~t~k~~p~~ 151 (350)
| +.||+.=++.+.||. ..|.|.++++++.+|++++- ...|+-|++|-+..-. =.||++++|++.|..
T Consensus 127 G-TVGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~--~~~e~~f~YR~S~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 127 G-TLGGAIWMNARCFGNEISEILDKITFIDEKGKTICK--KFKKEEFKYKISPFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred c-chhHHHHhhCCccccchheeEEEEEEEECCCCEEEE--EHHHcCcccccccCCCCCEEEEEEEEEEcCCC
Confidence 9 888999899999985 66999999999999999872 2348999999775221 259999999999864
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.06 E-value=3.6e-10 Score=108.57 Aligned_cols=138 Identities=16% Similarity=0.089 Sum_probs=110.8
Q ss_pred CCCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCeEEe-CCC--CEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCc
Q 045207 1 KHGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVD-VEN--EIACVQSSATIGQLYYKIAEKSKILAFLAGICHS 77 (350)
Q Consensus 1 ~~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i~~d-~~~--~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~ 77 (350)
++++|+.+.|+|+|.--.. .. .|++|.+ +|+.++++ .+. .+++|++|+.|.+|.+.+.++|+ .|....
T Consensus 42 ~~~~p~~vlG~GSNlLv~D-~~--~g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~~~~~l~~~~~~~gl-----~GlE~l 112 (334)
T PRK00046 42 AAGLPVLVLGGGSNVLFTE-DF--DGTVLLN-RIKGIEVLSEDDDAWYLHVGAGENWHDLVLWTLQQGM-----PGLENL 112 (334)
T ss_pred HcCCCEEEEeceEEEEECC-CC--CEEEEEe-cCCceEEEecCCCeEEEEEEcCCcHHHHHHHHHHcCc-----hhhHHh
Confidence 3689999999999975322 22 3899998 49999873 222 38999999999999999999873 577888
Q ss_pred ceeccccccCccCCccccccc-hhhceeEEEEEccC-CcEEeccCCCcchhhhhhhcCCCc----eEEEEEEEEEEeec
Q 045207 78 VGVDGHFSGRGYGLLLRKYGL-AADHVVDAHLIDVE-GRFLDRESMGEDLFWAILVGGGAS----FGVIIAWKIKLVTV 150 (350)
Q Consensus 78 vgv~G~~~gGg~G~~s~~~G~-~~d~v~~~~vV~a~-G~~~~~~~~~~dLfwa~rG~g~g~----~Givt~~t~k~~p~ 150 (350)
+||.| +.||+.=++.+.||. ..|.|.++++++.+ |++++- .+.|+.|++|-+..-. --||++++|++.|-
T Consensus 113 ~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~--~~~e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 113 ALIPG-TVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRL--SAAECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cCCCc-chhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEE--EHHHcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 99999 888999999999996 66999999999987 998872 2348999999774222 23999999999985
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.94 E-value=3.3e-09 Score=102.15 Aligned_cols=142 Identities=18% Similarity=0.199 Sum_probs=109.2
Q ss_pred CCceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCeEEe---CCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcc
Q 045207 2 HGLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVD---VENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSV 78 (350)
Q Consensus 2 ~~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i~~d---~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~v 78 (350)
+++|+.+.|+|.|.--..-.. .|+||.+++|+.+++. .....++|++|+.|.+|.+.+.++|+ .|....+
T Consensus 52 ~~~p~~iLG~GSNlL~~D~g~--~G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~~~~Lv~~~~~~gl-----~GlE~la 124 (354)
T PRK14648 52 ARIPLSLIGGGSNVLIADEGV--PGLMLSLRRFRSLHTQTQRDGSVLVHAGAGLPVAALLAFCAHHAL-----RGLETFA 124 (354)
T ss_pred cCCCEEEEeceeEEEEeCCCc--cEEEEEeCCcCceEEeeccCCcEEEEEEeCCcHHHHHHHHHHcCC-----cchhhhc
Confidence 689999999999965322212 3899999779988752 22247999999999999999999873 5778888
Q ss_pred eeccccccCccCCccccccc-hhhceeEEEEE--------------------ccCCcEEe-----------ccCCCcchh
Q 045207 79 GVDGHFSGRGYGLLLRKYGL-AADHVVDAHLI--------------------DVEGRFLD-----------RESMGEDLF 126 (350)
Q Consensus 79 gv~G~~~gGg~G~~s~~~G~-~~d~v~~~~vV--------------------~a~G~~~~-----------~~~~~~dLf 126 (350)
||.| +.||+.=++.+.||. ..|.|.+++++ +.+|+++. ..-.+.|+.
T Consensus 125 GIPG-TVGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~ 203 (354)
T PRK14648 125 GLPG-SVGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKRGECLGLDGGPFTCSSFQTVFARAGD 203 (354)
T ss_pred CCCc-chhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccCCCceecccccccccccceEecHHHcC
Confidence 9999 788999999999996 66999999999 45677620 011345899
Q ss_pred hhhhhcCCCc---------eEEEEEEEEEEeecC
Q 045207 127 WAILVGGGAS---------FGVIIAWKIKLVTVP 151 (350)
Q Consensus 127 wa~rG~g~g~---------~Givt~~t~k~~p~~ 151 (350)
|++|-+..-. --||++++|++.|..
T Consensus 204 f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 204 WGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 9999875321 239999999999864
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.84 E-value=1e-08 Score=95.93 Aligned_cols=133 Identities=19% Similarity=0.173 Sum_probs=104.5
Q ss_pred CceEEEEcCCCCcCCCccccCCCeEEEEcCC-CCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcceec
Q 045207 3 GLEIRVRGGGHYFEGVSYVSNVPLIIIDLIN-LSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVD 81 (350)
Q Consensus 3 ~~~~~~~ggGhs~~g~~~~~~~~gividl~~-~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgv~ 81 (350)
++|+.+.|+|+|.--..-.- +++||.+++ |+.++++. +|++|+.|.+|.+++.++|+ .|....+||.
T Consensus 37 ~~p~~vlG~GSNlL~~D~g~--~g~vI~l~~~~~~~~~~~-----~a~AG~~~~~l~~~~~~~gl-----~GlE~l~gIP 104 (273)
T PRK14651 37 EAPYRVLGGGSNLLVSDAGV--PERVIRLGGEFAEWDLDG-----WVGGGVPLPGLVRRAARLGL-----SGLEGLVGIP 104 (273)
T ss_pred CCCeEEEeceeEEEEcCCCc--ceEEEEECCcceeEeECC-----EEECCCcHHHHHHHHHHCCC-----cchhhhcCCC
Confidence 47999999999965322111 389998865 66665532 69999999999999999873 5777888999
Q ss_pred cccccCccCCccccccc-hhhceeEEEEEccCCcEEeccCCCcchhhhhhhcCCCceEEEEEEEEEEeecC
Q 045207 82 GHFSGRGYGLLLRKYGL-AADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVP 151 (350)
Q Consensus 82 G~~~gGg~G~~s~~~G~-~~d~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~ 151 (350)
| +.||+.=++.+.||. ..|.|.++++++ +|++++- .+.|+.|++|-+....=-||++++||+.|-.
T Consensus 105 G-TVGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~--~~~e~~f~YR~S~~~~~~iIl~a~f~l~~~~ 171 (273)
T PRK14651 105 A-QVGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQY--SPDELGFGYRHSGLPPGHVVTRVRLKLRPST 171 (273)
T ss_pred c-chhhHHHhhCCccccChheeEEEEEEEE-CCCEEEE--EHHHccccccccCCCCCEEEEEEEEEECCCC
Confidence 9 788898899999985 669999999997 8998872 2348999999775222249999999999864
No 32
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.60 E-value=9.2e-08 Score=88.75 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=100.8
Q ss_pred CceEEEEcCCCCcCCCccccCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceEEeccCCCcceecc
Q 045207 3 GLEIRVRGGGHYFEGVSYVSNVPLIIIDLINLSSINVDVENEIACVQSSATIGQLYYKIAEKSKILAFLAGICHSVGVDG 82 (350)
Q Consensus 3 ~~~~~~~ggGhs~~g~~~~~~~~gividl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgv~G 82 (350)
++|+.+.|+|.|.--..-.. +.+|-+++|+.++++. .+++|++|+.+.+|.+.+.++|+ .|....+||.|
T Consensus 31 ~~p~~vlG~GSNlLv~D~g~---~~vv~~~~~~~~~~~~--~~v~~~AG~~l~~l~~~~~~~gl-----~GlE~l~gIPG 100 (257)
T PRK13904 31 SQDGQIIGGANNLLISPNPK---NLAILGKNFDYIKIDG--ECLEIGGATKSGKIFNYAKKNNL-----GGFEFLGKLPG 100 (257)
T ss_pred CCCeEEEeceeEEEEecCCc---cEEEEccCcCeEEEeC--CEEEEEcCCcHHHHHHHHHHCCC-----chhhhhcCCCc
Confidence 57999999999964211112 3444445688888754 48999999999999999999873 57777888999
Q ss_pred ccccCccCCccccccc-hhhceeEEEEEccCCcEEeccCCCcchhhhhhhcCCCceEEEEEEEEEEeecC
Q 045207 83 HFSGRGYGLLLRKYGL-AADHVVDAHLIDVEGRFLDRESMGEDLFWAILVGGGASFGVIIAWKIKLVTVP 151 (350)
Q Consensus 83 ~~~gGg~G~~s~~~G~-~~d~v~~~~vV~a~G~~~~~~~~~~dLfwa~rG~g~g~~Givt~~t~k~~p~~ 151 (350)
+.||+.=++.+.||. .+|.|.++++++ | .+ ...|+.|++|-+.. -.||++++||+.|..
T Consensus 101 -tVGGAv~mNaGa~g~ei~d~l~~V~~~~--~-~~----~~~e~~f~YR~S~~--~~iIl~a~f~l~~~~ 160 (257)
T PRK13904 101 -TLGGLVKMNAGLKEYEISNNLESICTNG--G-WI----EKEDIGFGYRSSGI--NGVILEARFKKTHGF 160 (257)
T ss_pred -cHHHHHHhcCCcCccchheeEEEEEEEe--e-EE----eHHHCcccccCcCC--CcEEEEEEEEECCCC
Confidence 788888889999985 669999999998 4 22 34589999997752 259999999999964
No 33
>PRK09799 putative oxidoreductase; Provisional
Probab=77.01 E-value=5 Score=37.44 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=37.9
Q ss_pred EEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHH
Q 045207 6 IRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYK 60 (350)
Q Consensus 6 ~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~ 60 (350)
..+.+||+...-. .......++||++++ .+ .+..+.+.+++|+++++.++.+.
T Consensus 25 a~ilAGGT~L~~~-~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 25 AVWFAGGSKLNAT-PTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred CEEEecCCChHhh-hCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 4678999997421 112123689999976 44 34556789999999999999763
No 34
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=73.91 E-value=5.8 Score=40.38 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=39.6
Q ss_pred EEEEcCCCCcCC-CccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHH
Q 045207 6 IRVRGGGHYFEG-VSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAE 63 (350)
Q Consensus 6 ~~~~ggGhs~~g-~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~ 63 (350)
..+.+||++..- ..........+||++++..+ .+..+...+++|++++..++.+.+.+
T Consensus 214 a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el~~~l~~ 273 (467)
T TIGR02963 214 ARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDAYAALAK 273 (467)
T ss_pred CEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHHHHHHHH
Confidence 467889998732 11111123689999986544 34445678999999999999876654
No 35
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=70.41 E-value=8.7 Score=35.82 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=36.1
Q ss_pred EEEEcCCCCcCC-CccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHH
Q 045207 6 IRVRGGGHYFEG-VSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYY 59 (350)
Q Consensus 6 ~~~~ggGhs~~g-~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~ 59 (350)
-.+.+||+++.- .. .....++||+++. .+ .|..+.+.+++|+.++..++.+
T Consensus 24 a~~lAGGTdL~~~~~--~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 24 AVWFAGGSKLNATPT--RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred CEEEecCcchhhhhc--ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 457899999852 22 1112589999875 43 3444567999999999999875
No 36
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=69.63 E-value=3.7 Score=35.70 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=35.8
Q ss_pred eEEEEcCCCCcCCCc-cccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHH
Q 045207 5 EIRVRGGGHYFEGVS-YVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYK 60 (350)
Q Consensus 5 ~~~~~ggGhs~~g~~-~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~ 60 (350)
...+.+||++..-.- ........+||++++..+ .|..+.+.+++|++++..++.+.
T Consensus 23 ~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~~~ 80 (171)
T PF00941_consen 23 DARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELEES 80 (171)
T ss_dssp TEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHHHH
T ss_pred CCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHHhhc
Confidence 457788998853110 000012589999986543 33444689999999999999876
No 37
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=66.06 E-value=6.6 Score=36.66 Aligned_cols=54 Identities=6% Similarity=0.079 Sum_probs=37.6
Q ss_pred EEEEcCCCCcCCC-ccc-cCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHH
Q 045207 6 IRVRGGGHYFEGV-SYV-SNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYY 59 (350)
Q Consensus 6 ~~~~ggGhs~~g~-~~~-~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~ 59 (350)
..+.+||+++.-. ... ......+||++++..+ .|+.+.+.+++|+++++.++.+
T Consensus 17 a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 17 STFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 4678999986321 111 0113689999987654 3556678999999999999964
No 38
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=60.43 E-value=10 Score=36.70 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=34.8
Q ss_pred EEEcCCCCcCCC-ccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHH
Q 045207 7 RVRGGGHYFEGV-SYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYY 59 (350)
Q Consensus 7 ~~~ggGhs~~g~-~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~ 59 (350)
.+.+||++..-. -........+||+++...+ .|..+...+++|+++++.++.+
T Consensus 27 ~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 27 RPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred EEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 578999975311 1111123689999975443 2344567899999999999954
No 39
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=59.40 E-value=9.6 Score=36.17 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=36.1
Q ss_pred EEEEcCCCCcCC-CccccCCCeEEEEcCCCCCe-EEe-CCCCEEEEcCCCcHHHHHH
Q 045207 6 IRVRGGGHYFEG-VSYVSNVPLIIIDLINLSSI-NVD-VENEIACVQSSATIGQLYY 59 (350)
Q Consensus 6 ~~~~ggGhs~~g-~~~~~~~~gividl~~~~~i-~~d-~~~~~v~v~~G~~~~~l~~ 59 (350)
..+.+||+++.- ..........+||++++..+ .|. .++..+++|+++++.++.+
T Consensus 26 a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~~ 82 (291)
T PRK09971 26 AKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQIIE 82 (291)
T ss_pred CEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHhc
Confidence 467899998631 11111123689999986543 234 2346799999999999975
No 40
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=54.04 E-value=2.3 Score=28.74 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=8.9
Q ss_pred ccccccCCCCCCCCC
Q 045207 322 AYINYKDLDIGMNNE 336 (350)
Q Consensus 322 ~YvNy~d~dl~~~~~ 336 (350)
+|+||+|.+++..+|
T Consensus 1 aY~Ny~d~~~~~~~~ 15 (47)
T PF08031_consen 1 AYVNYPDPDLPGDDW 15 (47)
T ss_dssp --TTS--GGGGSSHH
T ss_pred CcccCCCCccchhHH
Confidence 699999999985565
No 41
>PLN02906 xanthine dehydrogenase
Probab=50.71 E-value=21 Score=41.09 Aligned_cols=58 Identities=7% Similarity=0.115 Sum_probs=39.9
Q ss_pred EEEEcCCCCcCCC-ccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHH
Q 045207 6 IRVRGGGHYFEGV-SYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAE 63 (350)
Q Consensus 6 ~~~~ggGhs~~g~-~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~ 63 (350)
-.+.+||+++.-. ........++||++++..+ .|..+...+++|+++++.+|.+.|.+
T Consensus 250 a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~~~l~~ 309 (1319)
T PLN02906 250 AKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQNLFRK 309 (1319)
T ss_pred CEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHHHHHHH
Confidence 3578899987321 1111123689999986554 34555678999999999999986544
No 42
>PLN00192 aldehyde oxidase
Probab=41.52 E-value=43 Score=38.78 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=40.1
Q ss_pred EEEEcCCCCcCCCccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHH
Q 045207 6 IRVRGGGHYFEGVSYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIAE 63 (350)
Q Consensus 6 ~~~~ggGhs~~g~~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~ 63 (350)
-.+.+||+++.-+-. .....++||+++...+ .|..+...+++|+++++.++.+.|..
T Consensus 259 a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~~l~~ 316 (1344)
T PLN00192 259 VKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIEALRE 316 (1344)
T ss_pred eEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHHHHHh
Confidence 567889998742211 1123689999986554 34556679999999999999876654
No 43
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=40.62 E-value=44 Score=38.62 Aligned_cols=57 Identities=12% Similarity=0.083 Sum_probs=39.3
Q ss_pred EEEEcCCCCcCCC-ccccCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHH
Q 045207 6 IRVRGGGHYFEGV-SYVSNVPLIIIDLINLSSI-NVDVENEIACVQSSATIGQLYYKIA 62 (350)
Q Consensus 6 ~~~~ggGhs~~g~-~~~~~~~gividl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~ 62 (350)
-.+.+||+++.-. .........+||+++...+ .+..+...+++|+++++.++.+.|.
T Consensus 258 a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~~~l~ 316 (1330)
T TIGR02969 258 APVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVKDILA 316 (1330)
T ss_pred CEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHHHHHH
Confidence 3577899997421 1111112589999986654 3455667999999999999998654
Done!