BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045208
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HU5|A Chain A, Crystal Structure Of Isochorismatase Family Protein From
Desulfovibrio Vulgaris Subsp. Vulgaris Str.
Hildenborough
pdb|3HU5|B Chain B, Crystal Structure Of Isochorismatase Family Protein From
Desulfovibrio Vulgaris Subsp. Vulgaris Str.
Hildenborough
Length = 204
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Query: 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSP 60
NDF+ ++G +P + + AR G V+ VVR H G D E R H +
Sbjct: 18 NDFVLPGAPACVEGAXGTVPVIAGLLAKARAEGWXVLHVVRAHRADGSDAEKSREHLFLE 77
Query: 61 GKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSV-----QT 115
G G V G+ GAE+V GL G+ LVKTRFSAF T L+ GVD++ Q
Sbjct: 78 GG-GLCVAGTPGAEIVAGLEPASGETVLVKTRFSAFXGTECDXLLRRRGVDTLLVSGTQY 136
Query: 116 PNCIRQTAFDAIALDY 131
PNCIR TA DA ALDY
Sbjct: 137 PNCIRGTAVDAFALDY 152
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
pdb|3EEF|B Chain B, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
Length = 182
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 24 RAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIRE 83
+ +E R+ G+ VV+V H P ++ ++ RH + KG G+E++D +
Sbjct: 33 KVIETFRRSGLPVVYVNDSHYPDDPEIRIWGRH---------SXKGDDGSEVIDEIRPSA 83
Query: 84 GDYKLVKTRFSAFFATHLHSFLQGAGVDSV-----QTPNCIRQTAFDAIALDYQ 132
GDY L K +S F+ T+L L+ G+D+V C+R TA DA+ +Y+
Sbjct: 84 GDYVLEKHAYSGFYGTNLDXILRANGIDTVVLIGLDADICVRHTAADALYRNYR 137
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|C Chain C, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|B Chain B, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|D Chain D, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|E Chain E, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|F Chain F, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|G Chain G, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|H Chain H, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
Length = 204
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQR---GILVVWVVREHNPLGRDVELFRRHR 57
NDF+ + ++ GG+ I+P++ + E R R I +V + H D + H
Sbjct: 17 NDFVGEKAPLRCPGGETIIPDLQKIFEWVRGREGDDIHLVHIQEAHRKNDADFRVRPLH- 75
Query: 58 YSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDS----- 112
AVKG+ G++ + L +E +Y + K R S F T L +L+ G+D+
Sbjct: 76 --------AVKGTWGSDFIPELYPQEDEYIVQKRRHSGFAHTDLDLYLKEEGIDTVVLTG 127
Query: 113 VQTPNCIRQTAFDAIALDYQ 132
V T C+R TA DA+A Y+
Sbjct: 128 VWTNVCVRSTATDALANAYK 147
>pdb|1NBA|A Chain A, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|B Chain B, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|C Chain C, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|D Chain D, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
Length = 264
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 14 GGKVILPNVIRAVEIARQRGILVVWVV-----REHNPLGRDVELFRRHRYSPGKVGPAVK 68
G + I+PNV R E AR +G+ V + R+ + D+ L+ + P + PA
Sbjct: 67 GMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLW--YSKIPTETLPA-- 122
Query: 69 GSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSV-----QTPNCIRQTA 123
S A++ D + +G+ + K R SAF T+L FL +D++ C+R T
Sbjct: 123 DSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTV 182
Query: 124 FDAIA 128
DAIA
Sbjct: 183 EDAIA 187
>pdb|3R77|A Chain A, Crystal Structure Of The D38a Mutant Of Isochorismatase
Phzd From Pseudomonas Fluorescens 2-79 In Complex With
2-Amino-2- Desoxyisochorismate Adic
pdb|3R77|B Chain B, Crystal Structure Of The D38a Mutant Of Isochorismatase
Phzd From Pseudomonas Fluorescens 2-79 In Complex With
2-Amino-2- Desoxyisochorismate Adic
Length = 209
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 64 GPAVKGS-RGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSV 113
GP +K S E+VD L + GD+ L K R+SAFF + L L +G D +
Sbjct: 97 GPGMKASPTDREVVDALAPQPGDWLLTKWRYSAFFNSDLLQRLHASGRDQL 147
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus
Horikoshii In Complex With Zinc
pdb|1ILW|A Chain A, Crystal Structure Of PyrazinamidaseNICOTINAMIDASE OF
Pyrococcus Horikoshii
Length = 180
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Query: 2 DFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPG 61
DF+ L +G K+I P V + +++G L+V R+ +P + + R R P
Sbjct: 14 DFMPGGALPVPEGDKII-PKVNEYIRKFKEKGALIV-ATRDWHP---ENHISFRERGGPW 68
Query: 62 KVGPAVKGSRGAELV-----DGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVD----- 111
V+ + GAE V D ++I + + K +S F T L L+G GV
Sbjct: 69 PRH-CVQNTPGAEFVVDLPEDAVIISKAT-EPDKEAYSGFEGTDLAKILRGNGVKRVYIC 126
Query: 112 SVQTPNCIRQTAFDAIALDYQ 132
V T C+R TA DA+ ++
Sbjct: 127 GVATEYCVRATALDALKHGFE 147
>pdb|3KL2|A Chain A, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|B Chain B, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|C Chain C, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|D Chain D, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|E Chain E, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|F Chain F, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|G Chain G, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|H Chain H, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|I Chain I, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|J Chain J, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|K Chain K, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|L Chain L, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
Length = 226
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 22/139 (15%)
Query: 1 NDFIADDGLVKMDGGKVI-----LPNVIRAVEIARQRGILVVWVVREHNPL--GRDVELF 53
N+F +D G++ V+ L N + V+ ARQ G+ ++ H P+
Sbjct: 35 NEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIM-----HAPITFAEGYGEL 89
Query: 54 RRHRYS--PGKV-GPA-VKGSRGAELVDGLVIREGDYKLVKTR-FSAFFATHLHSFLQGA 108
RH Y G V G A VKG+ GA +VD L GD + R F +T+L L+
Sbjct: 90 TRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFASTNLDFILRSK 149
Query: 109 GVDSV-----QTPNCIRQT 122
GVD++ T C+ T
Sbjct: 150 GVDTIVLGGFLTNCCVEST 168
>pdb|3TB4|A Chain A, Crystal Structure Of The Isc Domain Of Vibb
Length = 223
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 19 LPNVIRAVEI----ARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAE 74
+P++I+ ++ A+Q GI VV+ + N + L + PG S
Sbjct: 51 IPSLIKHIQQLKAHAKQAGIPVVYTAQPANQDPAERALLSDF-WGPGL-------SEETA 102
Query: 75 LVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSVQTPNC-----IRQTAFDAIAL 129
++ L GD +L K R+SAF + L +L+ G D + I TA DA
Sbjct: 103 IIAPLAPESGDVQLTKWRYSAFKKSPLLDWLRETGRDQLIITGVYAHIGILSTALDAFMF 162
Query: 130 DYQ 132
D Q
Sbjct: 163 DIQ 165
>pdb|3TG2|A Chain A, Crystal Structure Of The Isc Domain Of Vibb In Complex
With Isochorismate
Length = 223
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 19 LPNVIRAVEI----ARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAE 74
+P++I+ ++ A+Q GI VV+ + N + L + PG S
Sbjct: 51 IPSLIKHIQQLKAHAKQAGIPVVYTAQPANQDPAERALLSDF-WGPGL-------SEETA 102
Query: 75 LVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSVQTPNC-----IRQTAFDAIAL 129
++ L GD +L K R+SAF + L +L+ G D + I TA DA
Sbjct: 103 IIAPLAPESGDVQLTKWRYSAFKKSPLLDWLRETGRDQLIITGVYAHIGILSTALDAFMF 162
Query: 130 DYQ 132
D Q
Sbjct: 163 DIQ 165
>pdb|1NF9|A Chain A, Crystal Structure Of Phzd Protein From Pseudomonas
Aeruginosa
Length = 207
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 64 GPAVKGSRG-AELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSV 113
GP ++ S E+V+ L D+ L K R+SAFF + L ++ AG D +
Sbjct: 95 GPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQL 145
>pdb|1NF8|A Chain A, Crystal Structure Of Phzd Protein Active Site Mutant With
Substrate
Length = 207
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 64 GPAVKGSRG-AELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSV 113
GP ++ S E+V+ L D+ L K R+SAFF + L ++ AG D +
Sbjct: 95 GPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQL 145
>pdb|3LQY|A Chain A, Crystal Structure Of Putative Isochorismatase Hydrolase
From Oleispira Antarctica
Length = 190
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 30 RQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLV 89
RQ+G+ VV V RH + + + GS GA++ + +EG+ ++
Sbjct: 48 RQQGLPVVHV---------------RHEFPTDEAPFFLPGSDGAKIHPSVAAQEGEAVVL 92
Query: 90 KTRFSAFFATHLHSFLQGAGVDSVQTPNCIRQTAFDAI 127
K + ++F T L L AG+ + DA+
Sbjct: 93 KHQINSFRDTDLKKVLDDAGIKKLVIVGAXTHXXIDAV 130
>pdb|2FQ1|A Chain A, Crystal Structure Of The Two-Domain Non-Ribosomal Peptide
Synthetase Entb Containing Isochorismate Lyase And
Aryl-Carrier Protein Domains
pdb|2FQ1|B Chain B, Crystal Structure Of The Two-Domain Non-Ribosomal Peptide
Synthetase Entb Containing Isochorismate Lyase And
Aryl-Carrier Protein Domains
Length = 287
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 18 ILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVD 77
++ N+ + +Q I V + + D L + PG + ++VD
Sbjct: 58 VIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLN-DMWGPG----LTRSPEQQKVVD 112
Query: 78 GLVIREGDYKLVKTRFSAFFATHLHSFLQGAG 109
L D LVK R+SAF + L L+ +G
Sbjct: 113 RLTPDADDTVLVKWRYSAFHRSPLEQMLKESG 144
>pdb|4H17|A Chain A, Crystal Structure Of An Isochorismatase (Pp1826) From
Pseudomonas Putida Kt2440 At 1.60 A Resolution
pdb|4H17|B Chain B, Crystal Structure Of An Isochorismatase (Pp1826) From
Pseudomonas Putida Kt2440 At 1.60 A Resolution
Length = 197
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 8 GLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAV 67
G +K+ G + N+ R ++ AR+ G ++ V R +G R+ P GPA
Sbjct: 38 GPLKLSGXDEAVANIARLLDAARKSGRPIIHV-RHLGTVGG--------RFDPQ--GPA- 85
Query: 68 KGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAG 109
+ + GL EG+ + K +AF T LH LQ G
Sbjct: 86 -----GQFIPGLEPLEGEIVIEKRXPNAFKNTKLHETLQELG 122
>pdb|3OT4|A Chain A, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|B Chain B, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|C Chain C, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|D Chain D, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|E Chain E, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|F Chain F, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|G Chain G, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|H Chain H, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3UAO|A Chain A, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|B Chain B, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|C Chain C, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|D Chain D, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|E Chain E, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|F Chain F, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|G Chain G, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|H Chain H, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
Length = 236
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 73 AELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSV-----QTPNCIRQTAFDAI 127
+ +V L + G+Y + K+ SAF+ T L ++L GV ++ T +R + DA+
Sbjct: 122 SAIVPQLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGXVRASVVDAM 181
Query: 128 ALDYQ 132
+ ++
Sbjct: 182 SAGFR 186
>pdb|3OQP|A Chain A, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22 A
Resolution
pdb|3OQP|B Chain B, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22 A
Resolution
Length = 211
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSP 60
N+++ D ++ + L N+ RA + AR G+ VV +V+ P G LF R
Sbjct: 16 NEYVTGDLPIEYPDVQSSLANIARAXDAARAAGVPVV-IVQNFAPAGS--PLFAR----- 67
Query: 61 GKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSV 113
GS GAEL + R D+ + K+ SAF T L +L +D++
Sbjct: 68 --------GSNGAELHPVVSERARDHYVEKSLPSAFTGTDLAGWLAARQIDTL 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,828,882
Number of Sequences: 62578
Number of extensions: 168782
Number of successful extensions: 325
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 18
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)