Query 045208
Match_columns 176
No_of_seqs 114 out of 1180
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 10:53:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01015 CSHase N-carbamoylsarc 100.0 5E-39 1.1E-43 238.1 16.6 166 1-171 9-179 (179)
2 TIGR03614 RutB pyrimidine util 100.0 1.9E-37 4E-42 237.4 16.3 175 1-176 25-222 (226)
3 PRK11609 nicotinamidase/pyrazi 100.0 6.4E-37 1.4E-41 232.5 16.8 170 1-172 12-210 (212)
4 PRK11440 putative hydrolase; P 100.0 9.4E-37 2E-41 227.6 15.8 166 1-173 18-188 (188)
5 PF00857 Isochorismatase: Isoc 100.0 1.3E-36 2.8E-41 223.8 10.8 160 1-168 10-174 (174)
6 cd01011 nicotinamidase Nicotin 100.0 9E-36 1.9E-40 223.6 13.6 160 1-164 11-196 (196)
7 cd01013 isochorismatase Isocho 100.0 4E-35 8.6E-40 221.2 14.5 160 1-167 39-203 (203)
8 PTZ00331 alpha/beta hydrolase; 100.0 1.9E-34 4E-39 218.7 15.3 167 1-171 22-211 (212)
9 PLN02621 nicotinamidase 100.0 1.9E-34 4E-39 216.6 15.1 153 15-174 36-195 (197)
10 cd00431 cysteine_hydrolases Cy 100.0 5.1E-33 1.1E-37 202.3 14.1 148 1-157 9-161 (161)
11 cd01012 YcaC_related YcaC rela 100.0 6.3E-33 1.4E-37 201.4 11.9 142 1-174 9-156 (157)
12 COG1335 PncA Amidases related 100.0 4.6E-32 1E-36 204.7 15.7 173 1-174 15-203 (205)
13 PLN02743 nicotinamidase 100.0 3.1E-32 6.7E-37 209.1 13.8 155 1-166 37-236 (239)
14 cd01014 nicotinamidase_related 100.0 2.3E-31 5E-36 192.8 10.7 133 1-153 9-146 (155)
15 COG1535 EntB Isochorismate hyd 100.0 1.1E-30 2.3E-35 187.1 10.5 167 1-175 40-212 (218)
16 KOG4003 Pyrazinamidase/nicotin 99.8 2.2E-21 4.7E-26 139.2 4.3 166 1-168 11-214 (223)
17 KOG4044 Mitochondrial associat 99.7 1.2E-16 2.6E-21 113.5 9.6 135 12-174 31-171 (201)
18 PRK05443 polyphosphate kinase; 79.0 8.3 0.00018 34.6 6.9 69 93-164 347-426 (691)
19 TIGR03705 poly_P_kin polyphosp 69.1 15 0.00033 32.9 6.1 69 93-164 338-417 (672)
20 PF02679 ComA: (2R)-phospho-3- 67.4 17 0.00036 28.3 5.3 63 102-165 60-131 (244)
21 COG0855 Ppk Polyphosphate kina 63.1 24 0.00052 31.4 5.9 71 91-164 349-430 (696)
22 TIGR03849 arch_ComA phosphosul 56.7 56 0.0012 25.4 6.5 43 121-164 75-117 (237)
23 PF11814 DUF3335: Peptidase_C3 55.5 55 0.0012 24.9 6.1 54 120-174 57-127 (207)
24 PF06971 Put_DNA-bind_N: Putat 55.0 24 0.00051 20.3 3.2 26 149-174 14-39 (50)
25 PF10281 Ish1: Putative stress 54.4 6.5 0.00014 21.0 0.8 20 93-112 1-20 (38)
26 COG0761 lytB 4-Hydroxy-3-methy 52.6 1E+02 0.0022 24.7 7.4 102 12-139 13-122 (294)
27 COG1058 CinA Predicted nucleot 50.5 1E+02 0.0022 24.2 7.1 55 99-155 24-84 (255)
28 PRK05654 acetyl-CoA carboxylas 50.4 23 0.00051 28.3 3.6 38 1-42 128-165 (292)
29 PF05991 NYN_YacP: YacP-like N 49.6 36 0.00077 24.7 4.3 47 118-174 82-128 (166)
30 PF03853 YjeF_N: YjeF-related 48.5 52 0.0011 23.8 5.1 46 120-166 42-87 (169)
31 PHA03003 palmytilated EEV memb 47.4 37 0.00081 28.0 4.6 40 119-165 65-104 (369)
32 TIGR00515 accD acetyl-CoA carb 47.2 29 0.00063 27.7 3.7 38 1-42 127-164 (285)
33 PF13344 Hydrolase_6: Haloacid 45.6 24 0.00051 23.2 2.6 36 4-41 3-38 (101)
34 PF12200 DUF3597: Domain of un 45.0 8 0.00017 26.8 0.2 58 97-163 68-126 (127)
35 PF13090 PP_kinase_C: Polyphos 44.7 11 0.00023 31.0 0.9 63 101-164 23-96 (352)
36 TIGR02764 spore_ybaN_pdaB poly 44.2 78 0.0017 23.1 5.5 72 97-170 108-191 (191)
37 PLN02820 3-methylcrotonyl-CoA 44.0 34 0.00073 30.1 3.9 39 1-43 136-174 (569)
38 COG0241 HisB Histidinol phosph 41.9 87 0.0019 23.2 5.3 40 123-163 40-87 (181)
39 PRK12390 1-aminocyclopropane-1 40.8 1.1E+02 0.0025 24.6 6.4 63 103-166 60-129 (337)
40 PRK01271 4-oxalocrotonate taut 38.3 28 0.00061 21.9 1.9 27 68-95 49-76 (76)
41 PF03447 NAD_binding_3: Homose 38.1 1.2E+02 0.0025 20.1 5.2 64 98-163 48-114 (117)
42 COG0561 Cof Predicted hydrolas 36.8 60 0.0013 24.9 4.1 37 3-40 7-43 (264)
43 COG0647 NagD Predicted sugar p 36.2 51 0.0011 26.1 3.5 36 4-41 13-48 (269)
44 PF05222 AlaDh_PNT_N: Alanine 36.1 84 0.0018 21.9 4.3 43 121-171 18-63 (136)
45 TIGR01274 ACC_deam 1-aminocycl 35.9 1.6E+02 0.0034 23.8 6.5 65 101-166 57-128 (337)
46 TIGR02873 spore_ylxY probable 35.8 1.7E+02 0.0036 23.0 6.4 70 97-170 187-267 (268)
47 TIGR01358 DAHP_synth_II 3-deox 35.8 44 0.00096 28.3 3.2 35 8-42 309-346 (443)
48 CHL00174 accD acetyl-CoA carbo 35.2 59 0.0013 26.1 3.8 37 2-42 141-177 (296)
49 PRK06381 threonine synthase; V 35.2 2.1E+02 0.0047 22.7 7.1 58 102-166 55-115 (319)
50 TIGR00421 ubiX_pad polyprenyl 34.9 1.6E+02 0.0036 21.6 5.9 48 116-166 98-145 (181)
51 cd00885 cinA Competence-damage 34.8 1.8E+02 0.0038 21.1 6.9 55 98-154 21-81 (170)
52 TIGR01117 mmdA methylmalonyl-C 34.4 57 0.0012 28.3 3.8 38 1-42 322-359 (512)
53 TIGR02463 MPGP_rel mannosyl-3- 34.3 74 0.0016 23.6 4.1 37 3-40 3-39 (221)
54 PF05762 VWA_CoxE: VWA domain 33.9 72 0.0016 24.2 4.0 34 130-164 150-183 (222)
55 PRK03670 competence damage-ind 33.7 2E+02 0.0042 22.5 6.4 49 98-147 22-76 (252)
56 cd01424 MGS_CPS_II Methylglyox 33.7 1.1E+02 0.0025 20.0 4.6 83 90-174 24-109 (110)
57 TIGR02461 osmo_MPG_phos mannos 33.0 73 0.0016 24.1 3.9 35 3-39 3-37 (225)
58 TIGR02171 Fb_sc_TIGR02171 Fibr 32.8 48 0.001 30.8 3.2 69 17-94 805-877 (912)
59 cd01822 Lysophospholipase_L1_l 32.7 62 0.0014 22.7 3.4 27 14-40 82-108 (177)
60 PLN02291 phospho-2-dehydro-3-d 32.4 53 0.0011 28.1 3.2 30 13-42 337-366 (474)
61 COG3680 Uncharacterized protei 32.4 48 0.001 25.4 2.7 33 12-44 50-82 (259)
62 TIGR02536 eut_hyp ethanolamine 31.9 1.8E+02 0.0039 22.0 5.8 55 116-171 76-139 (207)
63 PF00070 Pyr_redox: Pyridine n 31.8 1.2E+02 0.0027 18.4 6.0 44 122-166 14-60 (80)
64 TIGR01552 phd_fam prevent-host 31.5 72 0.0016 17.8 2.8 27 15-42 4-30 (52)
65 PRK13600 putative ribosomal pr 31.4 66 0.0014 20.6 2.9 20 21-40 43-62 (84)
66 cd04501 SGNH_hydrolase_like_4 31.3 69 0.0015 22.8 3.4 27 14-40 77-103 (183)
67 PRK13028 tryptophan synthase s 30.9 1.2E+02 0.0025 25.5 5.0 57 106-166 106-166 (402)
68 TIGR01117 mmdA methylmalonyl-C 30.9 73 0.0016 27.7 3.9 38 1-42 89-126 (512)
69 PF01225 Mur_ligase: Mur ligas 30.9 95 0.0021 19.1 3.6 47 125-175 34-80 (83)
70 PF01474 DAHP_synth_2: Class-I 30.7 61 0.0013 27.5 3.3 36 8-43 312-350 (439)
71 PF08282 Hydrolase_3: haloacid 30.4 93 0.002 23.0 4.1 36 3-39 2-37 (254)
72 PRK04346 tryptophan synthase s 30.0 1.1E+02 0.0024 25.7 4.7 57 106-166 102-162 (397)
73 cd01821 Rhamnogalacturan_acety 29.8 97 0.0021 22.5 4.0 26 14-39 88-113 (198)
74 PF08415 NRPS: Nonribosomal pe 29.7 41 0.0009 19.6 1.6 13 30-42 20-32 (58)
75 PRK00912 ribonuclease P protei 29.5 69 0.0015 24.4 3.3 31 17-47 151-181 (237)
76 cd01830 XynE_like SGNH_hydrola 29.5 84 0.0018 23.0 3.7 27 14-40 100-126 (204)
77 COG1809 (2R)-phospho-3-sulfola 29.3 2.7E+02 0.0059 21.6 6.5 82 83-165 40-137 (258)
78 PRK11263 cardiolipin synthase 29.2 78 0.0017 26.6 3.7 41 121-164 52-92 (411)
79 PF02671 PAH: Paired amphipath 29.0 65 0.0014 17.7 2.3 28 146-173 1-28 (47)
80 PF02739 5_3_exonuc_N: 5'-3' e 29.0 81 0.0017 22.9 3.4 38 100-138 90-132 (169)
81 KOG0540 3-Methylcrotonyl-CoA c 28.9 70 0.0015 27.4 3.3 40 1-44 119-158 (536)
82 COG1412 Uncharacterized protei 28.9 70 0.0015 22.6 2.9 24 18-41 102-125 (136)
83 smart00775 LNS2 LNS2 domain. T 28.8 1.1E+02 0.0024 21.8 4.0 25 16-40 26-50 (157)
84 COG4799 Acetyl-CoA carboxylase 28.7 74 0.0016 27.7 3.5 40 1-44 98-137 (526)
85 PRK10976 putative hydrolase; P 28.7 1E+02 0.0022 23.6 4.1 36 3-39 6-41 (266)
86 cd05014 SIS_Kpsf KpsF-like pro 28.7 1E+02 0.0022 20.6 3.7 24 18-41 59-82 (128)
87 PRK06029 3-octaprenyl-4-hydrox 28.6 2.3E+02 0.005 21.0 5.8 46 118-166 103-148 (185)
88 COG1139 Uncharacterized conser 28.4 39 0.00085 28.6 1.8 94 17-141 58-155 (459)
89 PRK12702 mannosyl-3-phosphogly 28.0 1.1E+02 0.0023 24.7 4.1 37 3-40 5-41 (302)
90 PRK15492 triosephosphate isome 28.0 1.7E+02 0.0037 23.0 5.2 49 91-140 76-136 (260)
91 cd01838 Isoamyl_acetate_hydrol 28.0 97 0.0021 22.1 3.8 26 15-40 87-114 (199)
92 PRK01158 phosphoglycolate phos 27.8 1.1E+02 0.0024 22.7 4.1 36 3-39 7-42 (230)
93 COG0773 MurC UDP-N-acetylmuram 27.7 3.1E+02 0.0068 23.6 7.0 70 99-173 21-103 (459)
94 PRK14567 triosephosphate isome 27.7 1.6E+02 0.0035 23.1 5.0 48 91-139 67-126 (253)
95 PF11455 DUF3018: Protein of 27.3 65 0.0014 19.7 2.2 27 20-46 3-31 (65)
96 cd01563 Thr-synth_1 Threonine 26.9 3E+02 0.0066 21.9 6.7 58 101-166 61-122 (324)
97 TIGR03288 CoB_CoM_SS_B CoB--Co 26.8 1.7E+02 0.0036 23.0 5.1 23 120-143 19-43 (290)
98 cd04795 SIS SIS domain. SIS (S 26.4 1.1E+02 0.0025 18.5 3.4 22 19-40 60-81 (87)
99 PF10979 DUF2786: Protein of u 26.3 62 0.0014 17.9 1.8 18 16-33 1-18 (43)
100 PRK15126 thiamin pyrimidine py 26.2 1.1E+02 0.0024 23.5 4.0 36 3-39 6-41 (272)
101 PTZ00170 D-ribulose-5-phosphat 25.7 2.8E+02 0.006 21.1 6.0 101 20-142 19-125 (228)
102 COG2179 Predicted hydrolase of 25.4 2.2E+02 0.0048 21.0 5.0 101 13-145 42-145 (175)
103 PRK10513 sugar phosphate phosp 25.4 1.2E+02 0.0026 23.2 4.0 36 3-39 7-42 (270)
104 PRK12452 cardiolipin synthetas 25.4 95 0.0021 26.9 3.7 40 122-164 185-224 (509)
105 COG2870 RfaE ADP-heptose synth 25.2 75 0.0016 26.9 2.8 27 12-38 150-176 (467)
106 cd03174 DRE_TIM_metallolyase D 25.2 3.1E+02 0.0067 20.8 10.2 26 15-40 14-39 (265)
107 COG2896 MoaA Molybdenum cofact 25.2 1.9E+02 0.0042 23.6 5.1 133 3-161 27-181 (322)
108 PRK08329 threonine synthase; V 25.2 3.3E+02 0.0072 22.1 6.7 59 101-166 95-156 (347)
109 PF00239 Resolvase: Resolvase, 25.0 1.6E+02 0.0035 19.9 4.3 9 99-107 48-56 (141)
110 COG4822 CbiK Cobalamin biosynt 25.0 1.1E+02 0.0024 23.6 3.5 72 85-158 159-255 (265)
111 PRK10530 pyridoxal phosphate ( 24.9 1.2E+02 0.0026 23.2 3.9 36 3-39 7-42 (272)
112 PRK00192 mannosyl-3-phosphogly 24.8 1.3E+02 0.0028 23.3 4.1 36 3-39 8-43 (273)
113 TIGR00789 flhB_rel flhB C-term 24.8 78 0.0017 20.2 2.3 20 20-39 27-46 (82)
114 PF02156 Glyco_hydro_26: Glyco 24.7 71 0.0015 25.8 2.6 31 16-47 133-163 (311)
115 PRK03705 glycogen debranching 24.6 1.2E+02 0.0025 27.4 4.1 35 2-37 225-259 (658)
116 COG1202 Superfamily II helicas 24.5 2.3E+02 0.005 25.5 5.7 76 99-176 454-535 (830)
117 TIGR03217 4OH_2_O_val_ald 4-hy 24.3 3.9E+02 0.0085 21.7 7.3 62 103-165 94-161 (333)
118 PRK00549 competence damage-ind 24.2 3.5E+02 0.0076 22.8 6.7 55 99-154 23-82 (414)
119 PRK10736 hypothetical protein; 24.2 2.7E+02 0.0059 23.2 6.0 53 117-174 231-284 (374)
120 KOG1643 Triosephosphate isomer 23.7 3.4E+02 0.0074 20.8 5.9 43 94-137 71-125 (247)
121 PF03767 Acid_phosphat_B: HAD 23.6 64 0.0014 24.7 2.1 29 14-42 112-140 (229)
122 cd00138 PLDc Phospholipase D. 23.6 2.5E+02 0.0055 19.7 5.2 43 116-159 52-94 (176)
123 TIGR01668 YqeG_hyp_ppase HAD s 23.4 1.6E+02 0.0035 21.0 4.1 108 5-144 31-142 (170)
124 PF04900 Fcf1: Fcf1; InterPro 23.4 91 0.002 20.3 2.6 18 23-40 74-92 (101)
125 PRK10886 DnaA initiator-associ 23.0 1.2E+02 0.0027 22.6 3.5 23 18-40 121-143 (196)
126 PLN03050 pyridoxine (pyridoxam 22.5 2.7E+02 0.0058 21.6 5.4 39 122-163 79-117 (246)
127 TIGR01487 SPP-like sucrose-pho 22.5 1.6E+02 0.0035 21.7 4.1 37 3-40 5-41 (215)
128 PLN02618 tryptophan synthase, 22.4 2.1E+02 0.0045 24.2 5.0 57 106-166 115-175 (410)
129 PRK03669 mannosyl-3-phosphogly 22.4 1.5E+02 0.0033 22.9 4.1 36 3-39 11-46 (271)
130 PRK01642 cls cardiolipin synth 22.4 1.6E+02 0.0035 25.2 4.5 45 119-165 158-202 (483)
131 cd06602 GH31_MGAM_SI_GAA This 22.0 3.5E+02 0.0076 22.0 6.2 78 19-132 23-111 (339)
132 TIGR01482 SPP-subfamily Sucros 22.0 1.6E+02 0.0034 21.7 4.0 36 3-39 2-37 (225)
133 cd01450 vWFA_subfamily_ECM Von 21.9 2.4E+02 0.0052 19.1 4.8 41 134-175 107-153 (161)
134 COG3200 AroG 3-deoxy-D-arabino 21.9 1E+02 0.0022 25.6 2.9 36 7-42 312-350 (445)
135 PRK13361 molybdenum cofactor b 21.9 4.2E+02 0.0092 21.2 10.6 23 17-39 45-67 (329)
136 smart00481 POLIIIAc DNA polyme 21.6 1.5E+02 0.0033 17.3 3.2 23 21-43 16-38 (67)
137 PRK09722 allulose-6-phosphate 21.6 3.2E+02 0.007 21.0 5.6 55 101-157 159-216 (229)
138 PRK10444 UMP phosphatase; Prov 21.5 1.1E+02 0.0025 23.5 3.2 35 4-40 6-40 (248)
139 PLN02645 phosphoglycolate phos 21.2 1.1E+02 0.0024 24.4 3.2 37 3-41 32-68 (311)
140 PLN02561 triosephosphate isome 21.1 2.8E+02 0.006 21.7 5.2 49 91-140 70-130 (253)
141 PRK08197 threonine synthase; V 21.1 4.6E+02 0.0099 21.7 6.8 59 101-166 118-179 (394)
142 cd01836 FeeA_FeeB_like SGNH_hy 20.8 1.4E+02 0.003 21.3 3.4 27 14-40 85-113 (191)
143 PTZ00333 triosephosphate isome 20.7 3E+02 0.0065 21.6 5.3 47 92-139 72-130 (255)
144 TIGR00640 acid_CoA_mut_C methy 20.7 3E+02 0.0065 19.0 6.1 39 102-141 23-63 (132)
145 PF07283 TrbH: Conjugal transf 20.6 47 0.001 22.9 0.7 38 74-112 15-52 (121)
146 cd01833 XynB_like SGNH_hydrola 20.5 1.3E+02 0.0029 20.6 3.2 27 14-40 58-86 (157)
147 TIGR00732 dprA DNA protecting 20.5 2.7E+02 0.0059 21.1 5.0 52 117-173 168-220 (220)
148 PTZ00445 p36-lilke protein; Pr 20.4 3.7E+02 0.0081 20.6 5.6 66 100-168 33-102 (219)
149 cd01741 GATase1_1 Subgroup of 20.3 2E+02 0.0042 20.8 4.1 37 7-43 54-91 (188)
150 cd05710 SIS_1 A subgroup of th 20.3 1.7E+02 0.0037 19.5 3.5 24 18-41 59-82 (120)
151 PRK10624 L-1,2-propanediol oxi 20.2 5E+02 0.011 21.4 7.3 57 101-158 21-85 (382)
152 PF13450 NAD_binding_8: NAD(P) 20.1 1.1E+02 0.0023 18.4 2.2 20 120-140 9-28 (68)
153 TIGR01484 HAD-SF-IIB HAD-super 20.1 2E+02 0.0042 20.9 4.1 37 3-39 3-39 (204)
154 cd04448 DEP_PIKfyve DEP (Dishe 20.1 49 0.0011 21.0 0.7 20 90-109 23-42 (81)
155 PF11340 DUF3142: Protein of u 20.0 2E+02 0.0042 21.4 3.9 37 15-51 22-58 (181)
156 COG0041 PurE Phosphoribosylcar 20.0 2.1E+02 0.0045 20.8 3.9 38 101-139 21-65 (162)
No 1
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=100.00 E-value=5e-39 Score=238.14 Aligned_cols=166 Identities=30% Similarity=0.384 Sum_probs=148.5
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLV 80 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 80 (176)
|||++|++ +..++.+.+++|++++++.+|++|+||||+++.|.++..+.+.|.+.... .+.+..|++|++++++|.
T Consensus 9 ~~f~~~~~-~~~~~~~~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~---~~~~~~gs~~~~~~~~l~ 84 (179)
T cd01015 9 EGYTQPGS-YLAPGIAAALENVQRLLAAARAAGVPVIHTTVVYDPDGADGGLWARKVPA---MSDLVEGSPLAAICDELA 84 (179)
T ss_pred cceeCCCC-ccccchHHHHHHHHHHHHHHHHcCCCEEEEEeeECCccCccchhhhcccc---cccccCCCCccccccccC
Confidence 79998755 67788999999999999999999999999999887765555555433211 134778999999999999
Q ss_pred CCCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHH
Q 045208 81 IREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVD 155 (176)
Q Consensus 81 ~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~ 155 (176)
|.+++++|.|++||+|++|+|+.+|+++||++ ++||+||++|+++|+++||+ |+|++|||++.+++.|+.+|..
T Consensus 85 ~~~~~~v~~K~~~saF~~t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~-v~vv~Da~a~~~~~~h~~al~~ 163 (179)
T cd01015 85 PQEDEMVLVKKYASAFFGTSLAATLTARGVDTLIVAGCSTSGCIRATAVDAMQHGFR-PIVVRECVGDRAPAPHEANLFD 163 (179)
T ss_pred CCCCCEEEecCccCCccCCcHHHHHHHcCCCEEEEeeecccHhHHHHHHHHHHCCCe-EEEeeccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999 9999999999999999999999
Q ss_pred HHhcCcEeeeHHHHHH
Q 045208 156 MKNFGIATATLQEWSE 171 (176)
Q Consensus 156 l~~~g~~v~~~~e~~~ 171 (176)
|...++.|++++|++.
T Consensus 164 l~~~~~~v~~t~~~~~ 179 (179)
T cd01015 164 IDNKYGDVVSTDDALA 179 (179)
T ss_pred HHhhceeeccHHHHhC
Confidence 9999999999999863
No 2
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=100.00 E-value=1.9e-37 Score=237.40 Aligned_cols=175 Identities=27% Similarity=0.412 Sum_probs=149.5
Q ss_pred CCccCCCCccc-----cCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCCh-----hhhhhcc----CC--CC-CC
Q 045208 1 NDFIADDGLVK-----MDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDV-----ELFRRHR----YS--PG-KV 63 (176)
Q Consensus 1 ndF~~~~g~l~-----~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~-----~~~~~~~----~~--~~-~~ 63 (176)
|||++|+|.+. +.+.+.++++|++|++.+|++|+||||+++.|.+++.+. +.|.... .. .. ..
T Consensus 25 n~f~~~~~~~~~~~~~~~~~~~~i~~i~~l~~~aR~~g~pVI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (226)
T TIGR03614 25 NAYATPGGYLDLAGFDVSGTKPVIENIKKAVTAARAAGIQVIYFQNGWDNDYVEAGGPGSPNWHKSNALKTMRKRPELQG 104 (226)
T ss_pred hhhhCCCcccccccCcchhHHHHHHHHHHHHHHHHHcCCEEEEEecccChhhhhccCCCcccccccccccccccCccccc
Confidence 79999988873 356788999999999999999999999999887654221 1121100 00 01 12
Q ss_pred CCccCCCCCcccccCCCCCCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEec
Q 045208 64 GPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVV 138 (176)
Q Consensus 64 ~~~~~g~~~~~~~~~l~~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~ 138 (176)
+.|.+|+||++++++|.|.++|++|+|++||+|++|+|+.+|+++||++ +.||+||++|+++|+++||+ |+|++
T Consensus 105 ~~~~~g~~g~~~~~~l~p~~~d~vi~K~~~saF~~T~L~~~Lr~~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~-v~vv~ 183 (226)
T TIGR03614 105 KLLAKGTWDYELVDELQPQPGDIVLPKPRYSGFFNTPLDSMLRARGIRNLVFTGIATNVCVESTLRDGFHLEYF-GVVLE 183 (226)
T ss_pred ceeecCCCCcccCcccCCCCCCEEEeCCCcCCCCCCCHHHHHHHCCCCEEEEeccCccHhHHHHHHHHHHCCCE-EEEec
Confidence 3578999999999999999999999999999999999999999999999 99999999999999999999 99999
Q ss_pred cccCCCCH-HHHHHHHHHHHhcCcEeeeHHHHHHHhhcC
Q 045208 139 DATAAATP-DVHAANIVDMKNFGIATATLQEWSERVADA 176 (176)
Q Consensus 139 Da~~~~~~-~~h~~~l~~l~~~g~~v~~~~e~~~~l~~~ 176 (176)
|||++.++ +.|+.+|..|...++.|++++|+++.|+++
T Consensus 184 Da~a~~~~~~~h~~~l~~l~~~~~~v~~~~~~~~~l~~~ 222 (226)
T TIGR03614 184 DATHQAGPDFMQKAALYNIETFFGWVSDVADFCGTFSQN 222 (226)
T ss_pred hhccCCCchHHHHHHHHHHHhHheeeecHHHHHHHHhhc
Confidence 99999875 589999999998888999999999998763
No 3
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=100.00 E-value=6.4e-37 Score=232.47 Aligned_cols=170 Identities=28% Similarity=0.379 Sum_probs=147.6
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhh------hhhcc----CCCCCCCCccCCC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVEL------FRRHR----YSPGKVGPAVKGS 70 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~g~ 70 (176)
|||+ ++|.+++++.+.++++|++|++.||++|+||||+++.|.+++..+.. |.... ...-|+.+|.+|+
T Consensus 12 ndf~-~~g~l~~~~~~~~v~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt 90 (212)
T PRK11609 12 NDFC-AGGALAVPEGDSTIDVANRLIDWCQSRGIPVIASQDWHPANHGSFASNHGAEPGTQGELDGLPQTWWPDHCVQNS 90 (212)
T ss_pred ccCC-CCCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCcchhhcCCCCCccccccCCcccccCcccccCCC
Confidence 7999 57888899999999999999999999999999999988765533211 10000 0112567799999
Q ss_pred CCcccccCCCCCCCCeeeecC------CCCccC------CCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCc
Q 045208 71 RGAELVDGLVIREGDYKLVKT------RFSAFF------ATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQP 133 (176)
Q Consensus 71 ~~~~~~~~l~~~~~d~v~~K~------~~saf~------~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~ 133 (176)
+|++++|+|.|.++|++|.|+ +||+|+ +|+|+.+|+++||++ ++|++||++|+++|.++||+
T Consensus 91 ~g~el~~~l~~~~~d~vi~K~~~~~~~~~SaF~~~~~~~~T~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~- 169 (212)
T PRK11609 91 EGAALHPLLNQKAIDAVFHKGENPLIDSYSAFFDNGHRQKTALDDWLREHGITELIVMGLATDYCVKFTVLDALALGYQ- 169 (212)
T ss_pred CcCccChhhcccCCCEEEECCCCCCCcccccccCCCCCCCccHHHHHHHcCCCEEEEEEeccCHHHHHHHHHHHHCCCE-
Confidence 999999999998899999996 799998 699999999999999 99999999999999999999
Q ss_pred EEEeccccCCCC--HHHHHHHHHHHHhcCcEeeeHHHHHHH
Q 045208 134 VTVVVDATAAAT--PDVHAANIVDMKNFGIATATLQEWSER 172 (176)
Q Consensus 134 v~vv~Da~~~~~--~~~h~~~l~~l~~~g~~v~~~~e~~~~ 172 (176)
|+|++|||++++ ++.|+.+|..|...|+.|+|++|+++.
T Consensus 170 v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t~~~~~~~ 210 (212)
T PRK11609 170 VNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYTLADWEET 210 (212)
T ss_pred EEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEEHHHHHhh
Confidence 999999999985 788899999999999999999999864
No 4
>PRK11440 putative hydrolase; Provisional
Probab=100.00 E-value=9.4e-37 Score=227.58 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=142.1
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLV 80 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 80 (176)
|||+++.|. ..+.++++++|++|+++||+.|+||||+++.|.++..+....+. . ....+++..+++ ++++|+|.
T Consensus 18 n~f~~~~~~--~~~~~~~i~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~-~~~~~~l~ 91 (188)
T PRK11440 18 EGILPFAGG--PHTADEVVARAARLAAKFRASGSPVVLVRVGWSADYAEALKQPV--D-APSPAKVLPENW-WQHPAALG 91 (188)
T ss_pred cccccCCCC--cchHHHHHHHHHHHHHHHHHcCCcEEEEecccCCchhhhccCcc--c-ccccccccCCcc-cccCcccC
Confidence 788865443 34578999999999999999999999999888776544321110 0 111244677777 79999999
Q ss_pred CCCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHH
Q 045208 81 IREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVD 155 (176)
Q Consensus 81 ~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~ 155 (176)
|.++|.+|.|++||+|++|+|+.+|+++||++ +.|++||++|+++|+++||+ |+|++|||++.+++.|+.+|+.
T Consensus 92 ~~~~d~vi~K~~~saF~~T~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~-v~vv~Da~as~~~~~h~~al~~ 170 (188)
T PRK11440 92 KTDSDIEVTKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFN-LVIAEDACSAASAEQHQNSMNH 170 (188)
T ss_pred CCCCCEEEecCCcCCCCCCCHHHHHHHCCCCEEEEeeechhHHHHHHHHHHHHCCCE-EEEechhhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999 9999999999999999999999
Q ss_pred HHhcCcEeeeHHHHHHHh
Q 045208 156 MKNFGIATATLQEWSERV 173 (176)
Q Consensus 156 l~~~g~~v~~~~e~~~~l 173 (176)
|....+.|++++|+++.|
T Consensus 171 ~~~~~a~v~~~~~~~~~l 188 (188)
T PRK11440 171 IFPRIARVRSVEEILNAL 188 (188)
T ss_pred HHhheeEEeeHHHHHhhC
Confidence 988888999999999865
No 5
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=100.00 E-value=1.3e-36 Score=223.84 Aligned_cols=160 Identities=34% Similarity=0.488 Sum_probs=140.8
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLV 80 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 80 (176)
|+|+ ++.+..++.+.++++|++|++++|++++||||+++.|........ .....+.++|..|++++++++++.
T Consensus 10 ~~f~--~~~~~~~~~~~~i~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~l~~~l~ 82 (174)
T PF00857_consen 10 NDFI--NGSLAPPNAEAIIPNINRLLDAARAAGVPVIHTRDIHDSPHWSGP-----FEPKPWPPHCIPGSPGAELVPELA 82 (174)
T ss_dssp HHHH--TSTTTSTTHHHHHHHHHHHHHHHHHTTEEEEEEEESBSTTTTTTS-----GGHSCHTSCSBTTSGGGSBHGGGH
T ss_pred hhhh--cCCccccCHHHHHHHHHHHHHHHHHhCCCeEEEEeeecccccccc-----cccccccccccCCCCccceeeEee
Confidence 5677 677888999999999999999999999999999998872221111 111122466999999999999999
Q ss_pred CCCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHH
Q 045208 81 IREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVD 155 (176)
Q Consensus 81 ~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~ 155 (176)
|.+++.+|.|++||+|.+|+|.++|+++|+++ +.|++||++|+++|+++||+ |+|++|||++++++.|+.+|+.
T Consensus 83 ~~~~~~vi~K~~~saf~~t~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~-v~v~~Da~~~~~~~~h~~~l~~ 161 (174)
T PF00857_consen 83 PQPGDPVIEKNRYSAFFGTDLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYR-VIVVEDACASYSPEAHEAALEE 161 (174)
T ss_dssp CHTTSEEEEESSSSTTTTSSHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-E-EEEEEEEEEBSSHHHHHHHHHH
T ss_pred cccccceEEeecccccccccccccccccccceEEEcccccCcEEehhHHHHHHCCCE-EEEEChhhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999 9999999999999999999999
Q ss_pred HHhcCcEeeeHHH
Q 045208 156 MKNFGIATATLQE 168 (176)
Q Consensus 156 l~~~g~~v~~~~e 168 (176)
|..+|++|++++|
T Consensus 162 l~~~~~~v~t~~~ 174 (174)
T PF00857_consen 162 LRKRGAEVITSAE 174 (174)
T ss_dssp HHHHTSEEE-HHH
T ss_pred HHhCCCEEEeCCC
Confidence 9999999999986
No 6
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=100.00 E-value=9e-36 Score=223.59 Aligned_cols=160 Identities=29% Similarity=0.408 Sum_probs=139.8
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhh------c---cCCCCCCCCccCCCC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRR------H---RYSPGKVGPAVKGSR 71 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~g~~ 71 (176)
|||++| |.+++++.+.++++|+++++++| |+||||+++.|.++...+..... . .....|+.+|++|+|
T Consensus 11 ndf~~~-g~l~~~~~~~~v~~i~~l~~~ar--g~~Vi~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~ 87 (196)
T cd01011 11 NDFCPG-GALAVPGGDAIVPLINALLSLFQ--YDLVVATQDWHPANHASFASNHPGQMPFITLPPGPQVLWPDHCVQGTP 87 (196)
T ss_pred CCCCCC-CcccCCCHHHHHHHHHHHHHhcC--CCEEEEecCCCCCCCcChhhcCCCCCCccccCCCCcCcCCCccCCCCC
Confidence 899986 89999999999999999999999 99999999988775532211000 0 011236678999999
Q ss_pred CcccccCCCCCCCCeeeecC------CCCccCC------CChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcE
Q 045208 72 GAELVDGLVIREGDYKLVKT------RFSAFFA------THLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPV 134 (176)
Q Consensus 72 ~~~~~~~l~~~~~d~v~~K~------~~saf~~------t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v 134 (176)
|++++|+|.+.+++.+|.|+ +||+|++ |+|.++|+++||++ ++|++||++|+++|+++||+ |
T Consensus 88 g~~i~~~l~~~~~d~vi~K~~~~~~~~~saF~~~~~~~~t~L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~-v 166 (196)
T cd01011 88 GAELHPGLPVPDIDLIVRKGTNPDIDSYSAFFDNDRRSSTGLAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFE-V 166 (196)
T ss_pred CCccCcccccCCCCEEEECCCCCCCceeeeeecCCccCchhHHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCE-E
Confidence 99999999998899999994 6899998 99999999999999 99999999999999999999 9
Q ss_pred EEeccccCCCCHHHHHHHHHHHHhcCcEee
Q 045208 135 TVVVDATAAATPDVHAANIVDMKNFGIATA 164 (176)
Q Consensus 135 ~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~ 164 (176)
+|++|||++.+++.|+.+|+.|+..|+.++
T Consensus 167 ~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 167 RVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred EEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 999999999999999999999999998874
No 7
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=100.00 E-value=4e-35 Score=221.18 Aligned_cols=160 Identities=23% Similarity=0.185 Sum_probs=134.4
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLV 80 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 80 (176)
|||+++.+ ...++.+.+++++++|++++|++|+||||+++.+.....+...+.. . |...+..|+++++++++|.
T Consensus 39 ~~f~~~~~-~~~~~~~~~~~~i~~li~~ar~~g~pVi~t~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~ 112 (203)
T cd01013 39 RYFLDFYD-ESAEPVPQLIANIARLRDWCRQAGIPVVYTAQPGNQTPEQRALLND-F----WGPGLTASPEETKIVTELA 112 (203)
T ss_pred hhhhCccc-cccchHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCChhHHHHHHH-H----hhccCCCCCCccccccccC
Confidence 67886533 2346678899999999999999999999998755422111111111 0 1122456789999999999
Q ss_pred CCCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHH
Q 045208 81 IREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVD 155 (176)
Q Consensus 81 ~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~ 155 (176)
|.++|++|+|++||+|++|+|+.+|+++||++ +.|++||++||++|+++||+ |+|++|||++.+++.|+.+|+.
T Consensus 113 ~~~~d~vi~K~~~saF~~T~L~~~Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~-v~vv~Da~as~~~~~h~~al~~ 191 (203)
T cd01013 113 PQPDDTVLTKWRYSAFKRSPLLERLKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQ-PFVVADAIADFSLEEHRMALKY 191 (203)
T ss_pred CCCCCEEEeCCCcCCcCCCCHHHHHHHcCCCEEEEEEeccChhHHHHHHHHHHCCCe-EEEeccccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999 9999999999999999999999
Q ss_pred HHhcCcEeeeHH
Q 045208 156 MKNFGIATATLQ 167 (176)
Q Consensus 156 l~~~g~~v~~~~ 167 (176)
|...++.|++++
T Consensus 192 l~~~~a~v~~t~ 203 (203)
T cd01013 192 AATRCAMVVSTD 203 (203)
T ss_pred HHhheeEeeecC
Confidence 999999998874
No 8
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=100.00 E-value=1.9e-34 Score=218.72 Aligned_cols=167 Identities=26% Similarity=0.306 Sum_probs=144.8
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhh-------ccCCCCCCCCccCCCCCc
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRR-------HRYSPGKVGPAVKGSRGA 73 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~ 73 (176)
|||++| |.|.+++.++++++|+++++.+ .+.+|+|+++.|.+....+..+.. ......|+.+|++|+||+
T Consensus 22 ndF~~~-g~l~~~~~~~iv~~i~~l~~~~--~~~~Vi~~~d~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~gs~g~ 98 (212)
T PTZ00331 22 NDFCKG-GSLAVPDAEEVIPVINQVRQSH--HFDLVVATQDWHPPNHISFASNHGKPKILPDGTTQGLWPPHCVQGTKGA 98 (212)
T ss_pred CCCCCC-CccCCCCHHHHHHHHHHHHHhc--CCCEEEEecCcCCCCCcChhhcCCCCCcccCCCccCCCcccccCCCCcc
Confidence 899987 9999999999999999999943 455799999888765543221111 000113567799999999
Q ss_pred ccccCCCCCCCCeeeecC------CCCcc-----CCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEe
Q 045208 74 ELVDGLVIREGDYKLVKT------RFSAF-----FATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVV 137 (176)
Q Consensus 74 ~~~~~l~~~~~d~v~~K~------~~saf-----~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv 137 (176)
+++|+|.|.+++.+|.|. +||+| .+|+|..+|+++||++ ++|++||++|+++|.++||+ |+|+
T Consensus 99 ~i~~~L~~~~~~~vi~K~~~~~~~~~saF~~~~~~~t~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~-v~vv 177 (212)
T PTZ00331 99 QLHKDLVVERIDIIIRKGTNRDVDSYSAFDNDKGSKTGLAQILKAHGVRRVFICGLAFDFCVLFTALDAVKLGFK-VVVL 177 (212)
T ss_pred cCChhhccCCCcEEEECCCCCCCceecCccCCCCCCchHHHHHHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCE-EEEe
Confidence 999999999999999998 69999 9999999999999999 99999999999999999999 9999
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCcEeeeHHHHHH
Q 045208 138 VDATAAATPDVHAANIVDMKNFGIATATLQEWSE 171 (176)
Q Consensus 138 ~Da~~~~~~~~h~~~l~~l~~~g~~v~~~~e~~~ 171 (176)
+|||++++++.|+.+|+.|...|++|++++++++
T Consensus 178 ~Da~~~~~~~~~~~al~~~~~~g~~v~~~~~~~~ 211 (212)
T PTZ00331 178 EDATRAVDPDAISKQRAELLEAGVILLTSSDLVA 211 (212)
T ss_pred CcCccCCCHHHHHHHHHHHHHCCCEEEeHHHhhh
Confidence 9999999999999999999999999999999875
No 9
>PLN02621 nicotinamidase
Probab=100.00 E-value=1.9e-34 Score=216.63 Aligned_cols=153 Identities=24% Similarity=0.333 Sum_probs=134.8
Q ss_pred ccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCC-CccCCCCCcccccCCCC-CCCCeeeecCC
Q 045208 15 GKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVG-PAVKGSRGAELVDGLVI-REGDYKLVKTR 92 (176)
Q Consensus 15 ~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~l~~-~~~d~v~~K~~ 92 (176)
.+.+++++++|++.+|++|+||||+++.|.+.. +.+.+... |.+ .|.+|++|++++++|.| .+++.+|.|++
T Consensus 36 ~~~~v~~i~~Ll~~ar~~~~pVi~t~~~~~~~~-~~~~~~~~-----~~~~~~~~gs~g~~i~~~L~~~~~~~~vi~K~~ 109 (197)
T PLN02621 36 AEPILPALLTTIDLCRRASIPVFFTRHSHKSPS-DYGMLGEW-----WDGDLILDGTTEAELMPEIGRVTGPDEVVEKST 109 (197)
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEeccCCCcc-hhhhhhhh-----cCCccccCCCCccccchhccCCCCCCEEEECCC
Confidence 467999999999999999999999998875321 11111111 112 38899999999999998 67899999999
Q ss_pred CCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeHH
Q 045208 93 FSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQ 167 (176)
Q Consensus 93 ~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~~ 167 (176)
||+|++|+|..+|+++||++ ++||+||++|+++|+++||+ |+|++|||++.+++.|+.+|+.|...|+.|++++
T Consensus 110 ~saf~~t~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy~-v~v~~Da~as~~~~~h~~al~~~~~~~~~v~~~~ 188 (197)
T PLN02621 110 YSAFYNTRLEERLRKIGVKEVIVTGVMTNLCCETTAREAFVRGFR-VFFSTDATATANEELHEATLKNLAYGFAYLVDCD 188 (197)
T ss_pred cCCCCCCcHHHHHHHCCCCEEEEEecccchhHHHHHHHHHHCCCE-EEEeccccCCCCHHHHHHHHHHHHhhceEeecHH
Confidence 99999999999999999999 99999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 045208 168 EWSERVA 174 (176)
Q Consensus 168 e~~~~l~ 174 (176)
++++.|.
T Consensus 189 ~~~~~~~ 195 (197)
T PLN02621 189 RLEAGLL 195 (197)
T ss_pred HHHHHHh
Confidence 9998874
No 10
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=100.00 E-value=5.1e-33 Score=202.32 Aligned_cols=148 Identities=36% Similarity=0.532 Sum_probs=132.3
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLV 80 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 80 (176)
|+|+.+.+... ++.+.++++++++++++|++++||||+++.+.++..+.... .|+++|.+|+++++++++|.
T Consensus 9 ~~f~~~~~~~~-~~~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~~~~l~ 80 (161)
T cd00431 9 NDFVPGGGLLL-PGADELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAEL-------LWPPHCVKGTEGAELVPELA 80 (161)
T ss_pred ccCcCCCCCcC-ccHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCCCcccccc-------cCcccccCCCchhhcchhhC
Confidence 67887655543 77899999999999999999999999999888766443221 34466999999999999999
Q ss_pred CCCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHH
Q 045208 81 IREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVD 155 (176)
Q Consensus 81 ~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~ 155 (176)
+.+++.+|.|+++|+|.+|+|.++|+++|+++ +.|++||++|+++|+++||+ |+|++|||++.+.+.|+.++..
T Consensus 81 ~~~~~~~i~K~~~saf~~t~l~~~L~~~~i~~vil~G~~t~~CV~~T~~~a~~~G~~-v~vi~Da~~s~~~~~~~~al~~ 159 (161)
T cd00431 81 PLPDDLVIEKTRYSAFYGTDLDELLRERGIDTLVVCGIATDICVLATARDALDLGYR-VIVVEDACATRDEEDHEAALER 159 (161)
T ss_pred CCCCCEEEecCCcCCccCCCHHHHHHHCCCCEEEEEecCcChhHHHHHHHHHHCCCE-EEEehhhcccCChHHHHHHHHH
Confidence 98999999999999999999999999999999 99999999999999999999 9999999999999999999988
Q ss_pred HH
Q 045208 156 MK 157 (176)
Q Consensus 156 l~ 157 (176)
|.
T Consensus 160 ~~ 161 (161)
T cd00431 160 LA 161 (161)
T ss_pred cC
Confidence 63
No 11
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=100.00 E-value=6.3e-33 Score=201.44 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=126.8
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLV 80 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 80 (176)
|||+.. ..+.+.++++|++|++++|++|+||||+++. +. +..+++|+|.
T Consensus 9 ~~f~~~-----~~~~~~~~~~i~~l~~~ar~~g~pVi~~~~~--~~------------------------~~g~~~~~l~ 57 (157)
T cd01012 9 EKLAPA-----IKSFDELINNTVKLAKAAKLLDVPVILTEQY--PK------------------------GLGPTVPELR 57 (157)
T ss_pred HHHHHh-----hcCHHHHHHHHHHHHHHHHhcCCCEEEEeeC--CC------------------------CCCCchHHHH
Confidence 567641 2347899999999999999999999999642 10 1126889998
Q ss_pred C-CCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHH
Q 045208 81 I-REGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIV 154 (176)
Q Consensus 81 ~-~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~ 154 (176)
| .+++.+|.|++||+|.+|+|..+|+++|+++ +.|++||++|+++|+++||+ |+|++|||++++++.|+.+|+
T Consensus 58 ~~~~~~~vi~K~~~saf~~t~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~-v~v~~Da~as~~~~~h~~al~ 136 (157)
T cd01012 58 EVFPDAPVIEKTSFSCWEDEAFRKALKATGRKQVVLAGLETHVCVLQTALDLLEEGYE-VFVVADACGSRSKEDHELALA 136 (157)
T ss_pred hhCCCCCceecccccCcCCHHHHHHHHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCE-EEEEeeCCCCCCHHHHHHHHH
Confidence 8 8899999999999999999999999999999 99999999999999999999 999999999999999999999
Q ss_pred HHHhcCcEeeeHHHHHHHhh
Q 045208 155 DMKNFGIATATLQEWSERVA 174 (176)
Q Consensus 155 ~l~~~g~~v~~~~e~~~~l~ 174 (176)
.|...|++|+++++++..|-
T Consensus 137 ~~~~~~~~v~~~~~~~~~l~ 156 (157)
T cd01012 137 RMRQAGAVLTTSESVLFELQ 156 (157)
T ss_pred HHHHCCCEEeeHHHHHHHHc
Confidence 99999999999999998863
No 12
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.6e-32 Score=204.68 Aligned_cols=173 Identities=30% Similarity=0.284 Sum_probs=141.5
Q ss_pred CCccCCCCccccCCcc--chhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccC
Q 045208 1 NDFIADDGLVKMDGGK--VILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDG 78 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~--~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (176)
|||+.+.|.+...+.+ .+++++++|++.+|+.|+||||+++.|.++....+.........+|+.+|++|++|++++++
T Consensus 15 ~~f~~~~~~~~~~~~~~~~i~~~i~~l~~~ar~~~~~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~h~~~g~~g~~~~~~ 94 (205)
T COG1335 15 NDFMPGGGSLAALGVDGRKIIPNIAALVDAARAAGQPVIATQDWHPADISSLAGSPESSKLFPWPRHDVKGTPGAELLGE 94 (205)
T ss_pred ccccCCCCcccccCCchhhhHHHHHHHHHHHHHcCCeEEEecccCCCcccccccccccccCCCCcchhcCCCcchhhccc
Confidence 7999988877655554 89999999999999999999999999987653322100000001155679999999999999
Q ss_pred CCCCCC------CeeeecC-CCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCC-
Q 045208 79 LVIREG------DYKLVKT-RFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAAT- 145 (176)
Q Consensus 79 l~~~~~------d~v~~K~-~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~- 145 (176)
|.|..+ +.++.|. +||+|++|+|..+|+++||++ ++|++||++|+++|+++||+ |++++|||++.+
T Consensus 95 l~~~~~~~~~~~~~~~~k~~~~saF~~T~L~~~Lr~~~i~~l~v~G~~td~CV~~T~~~A~~~gy~-v~v~~da~~~~~~ 173 (205)
T COG1335 95 LPPAVDDAQLVPEDVIFKKHGYSAFAGTDLDDILRNLGIDTVVVCGIATDICVLATARDAFDLGYQ-VTLVEDATAGSSL 173 (205)
T ss_pred cccccccccccceeeeccccccCcccCCCHHHHHHHCCCCEEEEeeeehhHHHHHHHHHHHHCCCe-EEEehhhcccCCC
Confidence 998876 7888888 999999999999999999999 99999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHh-cCcEeeeHHHHHHHhh
Q 045208 146 PDVHAANIVDMKN-FGIATATLQEWSERVA 174 (176)
Q Consensus 146 ~~~h~~~l~~l~~-~g~~v~~~~e~~~~l~ 174 (176)
+..|...+..+.. ....++++.+.+..++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (205)
T COG1335 174 DRSGEAAARLEKHHIFGAVLDTEEALALWA 203 (205)
T ss_pred ChHHHHHHHHHHhhhhcceeehHHHHhhhc
Confidence 5566777777666 3557777777666554
No 13
>PLN02743 nicotinamidase
Probab=100.00 E-value=3.1e-32 Score=209.10 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=132.0
Q ss_pred CCccCCC-Ccccc----CCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCccc
Q 045208 1 NDFIADD-GLVKM----DGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAEL 75 (176)
Q Consensus 1 ndF~~~~-g~l~~----~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 75 (176)
|||++|+ |.++. ++++.+++++++|+++||++|+||||+++.|.++..+ ..| +.+|++|+||+++
T Consensus 37 ndF~~~~~g~l~~~~~~~~~~~iv~~i~~Ll~~aR~~g~pVI~~~d~h~~~~~~-~~~---------~~h~v~Gt~g~ei 106 (239)
T PLN02743 37 NGFCTVGAGNLAPREPDKQISKMVDESARLAREFCERKWPVLAFLDSHHPDKPE-HPY---------PPHCIVGTGEENL 106 (239)
T ss_pred CCccCCCccccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCccCCCccc-cCC---------CCccCCCCccccc
Confidence 8999875 45542 3467899999999999999999999999988766533 223 3459999999999
Q ss_pred ccCCCCCCCCe---eeecCCCCccCCC------C-hHHHHHhCCCCe-----eecChhhH---HHHHHHHhCCC-----C
Q 045208 76 VDGLVIREGDY---KLVKTRFSAFFAT------H-LHSFLQGAGVDS-----VQTPNCIR---QTAFDAIALDY-----Q 132 (176)
Q Consensus 76 ~~~l~~~~~d~---v~~K~~~saf~~t------~-l~~~L~~~~i~~-----~~t~~CV~---~Ta~~a~~~g~-----~ 132 (176)
+++|.|.+++. ++.|.+||+|++| + |.++|+++||++ ++|++||+ +|+++|+++|| +
T Consensus 107 ~~~L~p~~~~~~v~v~~K~~~saF~~t~~~~~t~~L~~~Lr~~gI~~liv~Gv~T~~CV~~~~sTardA~~~Gy~~~~~~ 186 (239)
T PLN02743 107 VPALQWLENDPNVTLRRKDCIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGICTDICVLDFVASALSARNHGILPPLED 186 (239)
T ss_pred chhhCCCCCCceEEEEecCccccccccccccCccHHHHHHHHCCCCEEEEEEeCcchhccChHHHHHHHHHcCCCCCCce
Confidence 99999987765 5679999999986 3 899999999999 99999998 99999999999 9
Q ss_pred cEEEeccccCCCCHH-----------------HHHHHHHHHHhcCcEeeeH
Q 045208 133 PVTVVVDATAAATPD-----------------VHAANIVDMKNFGIATATL 166 (176)
Q Consensus 133 ~v~vv~Da~~~~~~~-----------------~h~~~l~~l~~~g~~v~~~ 166 (176)
|+|++|||++++.+ .|+.+|..|...|++|++.
T Consensus 187 -V~Vv~DA~at~d~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 236 (239)
T PLN02743 187 -VVVYSRGCATYDLPLHVAKTIKGALAHPQELMHHMGLYMAKGRGAKVVSK 236 (239)
T ss_pred -EEEeCCccccCChhhhhhhhhccccCCCHHHHHHHHHHHHHhCCcEeeee
Confidence 99999999998854 3566888899999999874
No 14
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=99.97 E-value=2.3e-31 Score=192.82 Aligned_cols=133 Identities=31% Similarity=0.385 Sum_probs=118.5
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLV 80 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 80 (176)
|||+.+.+. ..+.+.++++|+++++++|++|+||||+++.+.+.. ++.+|++|++++|+|.
T Consensus 9 ~~f~~~~~~--~~~~~~~v~~i~~li~~~r~~~~~Vi~~~~~~~~~~-----------------~~~~gt~g~~l~~~l~ 69 (155)
T cd01014 9 NGYFDGGLP--PLNNEAALENIAALIAAARAAGIPVIHVRHIDDEGG-----------------SFAPGSEGWEIHPELA 69 (155)
T ss_pred hhhhCCCCC--cCCHHHHHHHHHHHHHHHHHCCCeEEEEEeccCCCC-----------------CCCCCCCccccchhhc
Confidence 689865433 347899999999999999999999999987654331 2678999999999999
Q ss_pred CCCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHH
Q 045208 81 IREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANI 153 (176)
Q Consensus 81 ~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l 153 (176)
+.+++.+|+|++||+|.+|+|.++|+++|+++ ++|++||++|+++|+++||+ |+|++|||++++...|+..|
T Consensus 70 ~~~~d~v~~K~~~saf~~t~l~~~L~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~-v~vi~Da~~s~~~~~~~~~~ 146 (155)
T cd01014 70 PLEGETVIEKTVPNAFYGTDLEEWLREAGIDHLVICGAMTEMCVDTTVRSAFDLGYD-VTVVADACATFDLPDHGGVL 146 (155)
T ss_pred CCCCCEEEeCCCCCCcCCCCHHHHHHHCCCCEEEEEeeccchhHHHHHHHHHHCCCc-EEEecccccCCCcccCCcee
Confidence 98889999999999999999999999999999 99999999999999999999 99999999999987776554
No 15
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.1e-30 Score=187.12 Aligned_cols=167 Identities=25% Similarity=0.232 Sum_probs=142.7
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCC-ccCCCCCcccccCC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGP-AVKGSRGAELVDGL 79 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~l 79 (176)
|.|++|.|+- .+..+.+|.||++|-.+|.++|+||+||.+.+.....+..... . ++|+ ...+.+...++++|
T Consensus 40 ~YFv~~~~~~-~~~~~~li~Ni~~Lr~~~~~~giPVvyTaqp~~qs~~draLL~-----d-~WGpgl~~~p~~~~vv~~l 112 (218)
T COG1535 40 NYFVSPWGEN-CPLMEQLIANIAKLRIWCKQAGIPVVYTAQPGEQSPEDRALLK-----D-FWGPGLTASPEQQKVVDEL 112 (218)
T ss_pred HhhcCCCCCC-CccHHHHHHHHHHHHHHHHHcCCcEEEEecCCcCCHHHHHHHH-----H-hcCCCCCCChhhhhhHHhc
Confidence 5788886663 4688999999999999999999999999775543221221111 1 1233 34445678899999
Q ss_pred CCCCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHH
Q 045208 80 VIREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIV 154 (176)
Q Consensus 80 ~~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~ 154 (176)
.|..+|.++.|++||+|+.++|.+.||+.|+++ +.+++||+.|+++||-++++ +++|.|++++++.+.|..+|+
T Consensus 113 ~P~~~D~vL~kwrYsAF~~s~Llq~lr~~grdQLIItGVyaHigcl~TA~dAFm~diq-pfmV~DAlaDfs~~~H~msLk 191 (218)
T COG1535 113 APGADDTVLTKWRYSAFHRSPLLQMLREKGRDQLIITGVYAHIGCLTTATDAFMRDIQ-PFMVADALADFSEEEHRMSLK 191 (218)
T ss_pred CCCCCceEEeeeehhhhhcChHHHHHHHcCCCcEEEeehhhhhhhhhhHHHHHHhcCc-ceeehhhhhhccHHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999 999999999999999999999
Q ss_pred HHHhcCcEeeeHHHHHHHhhc
Q 045208 155 DMKNFGIATATLQEWSERVAD 175 (176)
Q Consensus 155 ~l~~~g~~v~~~~e~~~~l~~ 175 (176)
+++.+.+.|++|+|++.+++.
T Consensus 192 y~A~r~a~vv~Teell~~~~~ 212 (218)
T COG1535 192 YVAGRCARVVMTEELLCALAS 212 (218)
T ss_pred HHhcceeEEeeHHHHhhcccc
Confidence 999998899999999998865
No 16
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms]
Probab=99.83 E-value=2.2e-21 Score=139.18 Aligned_cols=166 Identities=21% Similarity=0.257 Sum_probs=127.0
Q ss_pred CCccCCCCccc-cCCccchhHHHHHHHHHHHHCCC-cEEEEEcccCCCCCChhh----------hhhccCC-------CC
Q 045208 1 NDFIADDGLVK-MDGGKVILPNVIRAVEIARQRGI-LVVWVVREHNPLGRDVEL----------FRRHRYS-------PG 61 (176)
Q Consensus 1 ndF~~~~g~l~-~~~~~~ii~~i~~li~~~r~~~~-~Vi~~~~~~~~~~~~~~~----------~~~~~~~-------~~ 61 (176)
|||++|-|.+. ++..+..+.++..++..+. ..| .||+|+++|..+..-+.. ...+..+ .+
T Consensus 11 ndfi~~~~~~~s~~E~~~~i~Pi~~lLq~~d-~dw~~Vv~TKDwHP~~HiSF~~~h~~~~p~~~~t~~~~~~~d~V~~~~ 89 (223)
T KOG4003|consen 11 NDFISPLGSLTSVPEGEELINPISDLLQDAD-RDWHRVVVTKDWHPSRHISFAKNHKDKEPYSTYTYHSPRPGDDVTQEG 89 (223)
T ss_pred ccccccccccccCCCchhhhccHHHHHHhcc-cccceEEEecccCcccceehhhhccCCCCCCCCcccCCCcCCchheee
Confidence 89999988886 3444455555555555432 234 499999998765421110 0001111 11
Q ss_pred --CCCCccCCCCCcccccCCCCCCCCeeeecC------CCCccCC------CChHHHHHhCCCCe-----eecChhhHHH
Q 045208 62 --KVGPAVKGSRGAELVDGLVIREGDYKLVKT------RFSAFFA------THLHSFLQGAGVDS-----VQTPNCIRQT 122 (176)
Q Consensus 62 --~~~~~~~g~~~~~~~~~l~~~~~d~v~~K~------~~saf~~------t~l~~~L~~~~i~~-----~~t~~CV~~T 122 (176)
|+.+|++.|||.++++++.......+|.|. .||+|+. |+|..+|++.+|+. +++|.||..|
T Consensus 90 vl~p~HCv~ntwG~d~~~~~~~~~~~~~I~KG~D~~~eSYSaF~D~~GR~kt~L~~~L~k~~Id~V~IAGvA~DICVk~T 169 (223)
T KOG4003|consen 90 ILWPVHCVKNTWGVDQIMDQVVTKHIKIIDKGFDTDRESYSAFHDIWGRHKTDLNKYLEKHHIDEVYIAGVALDICVKAT 169 (223)
T ss_pred ecchhhhhccCCCCCcchhhhhhhheeecccCcchhHHHHHHHhhhcccchhhHHHHHHHcCCCeEEEeehhhHHHHHHH
Confidence 357899999999999999887778899997 5999964 89999999999998 9999999999
Q ss_pred HHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeHHH
Q 045208 123 AFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQE 168 (176)
Q Consensus 123 a~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~~e 168 (176)
|++|.+.||. ..|+..|+.+.+-+.|+.+...++..+..+++-.+
T Consensus 170 aL~A~~~~y~-t~vI~E~~~Gsst~si~~~~~~F~k~k~e~IS~~~ 214 (223)
T KOG4003|consen 170 ALSAAELGYK-TTVILEYTRGSSTPSISDDPEVFNKVKEELISHNI 214 (223)
T ss_pred HhhHHHhCcc-eeeehhhhccCCCcccccCHHHHHHhhHHHhhccc
Confidence 9999999999 99999999999998888888888888877776443
No 17
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=99.70 E-value=1.2e-16 Score=113.51 Aligned_cols=135 Identities=24% Similarity=0.293 Sum_probs=107.1
Q ss_pred cCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCCCCCCCeeeecC
Q 045208 12 MDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKT 91 (176)
Q Consensus 12 ~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~d~v~~K~ 91 (176)
++....+|.+..+|++++|-.++|+|.| +++|.+ .|+. +++|....-..++.|+
T Consensus 31 i~yf~~iIs~~~rLl~aaril~vP~ivT--EqYP~g---------------LG~T---------V~eLd~~g~~~~~~KT 84 (201)
T KOG4044|consen 31 IPYFPSIISVTTRLLAAARILQVPVIVT--EQYPEG---------------LGKT---------VPELDIEGLKLNLSKT 84 (201)
T ss_pred chhhHHHHHHHHHHHHhhhhhCCcEEee--cccccc---------------cccc---------chhhchhhhccccccc
Confidence 4667899999999999999999999999 344432 1222 2334321223358999
Q ss_pred CCCccCCCChHHHHHh-CCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeee
Q 045208 92 RFSAFFATHLHSFLQG-AGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATAT 165 (176)
Q Consensus 92 ~~saf~~t~l~~~L~~-~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~ 165 (176)
.||.+. ++..+-|++ .|.++ +.|++||++|+++..++|.+ |.||.|||++++.....-++++|++.|+.+.|
T Consensus 85 ~FSM~~-p~v~~s~~~i~~~k~VvL~GiEthvCv~qTa~dLl~rgl~-VhvVaDacSSRs~~DR~~Al~r~rq~G~~lst 162 (201)
T KOG4044|consen 85 KFSMVL-PPVEDSLKDIFGGKTVVLFGIETHVCVLQTALDLLERGLN-VHVVADACSSRSNQDRDLALERMRQAGANLST 162 (201)
T ss_pred ceeeeC-chHHHHHHhccCCCeEEEEecchheehHHHHHHHHhCCce-EEEEeehhccccchhHHHHHHHHHhcCCcccc
Confidence 999984 455555665 45445 99999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 045208 166 LQEWSERVA 174 (176)
Q Consensus 166 ~~e~~~~l~ 174 (176)
++.++=.|.
T Consensus 163 sEsvI~~Lv 171 (201)
T KOG4044|consen 163 SESVILNLV 171 (201)
T ss_pred hHHHHHHHh
Confidence 998876553
No 18
>PRK05443 polyphosphate kinase; Provisional
Probab=79.02 E-value=8.3 Score=34.65 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=54.0
Q ss_pred CCccCCCChHHHHHhCCCC-------e----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCc
Q 045208 93 FSAFFATHLHSFLQGAGVD-------S----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGI 161 (176)
Q Consensus 93 ~saf~~t~l~~~L~~~~i~-------~----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~ 161 (176)
|.+| ..+.+.|++...| . ++.+-=+......|.++|.+ |+|+-+.-+-++.+.-..-...|.+.|+
T Consensus 347 Y~SF--~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~-V~vlve~karfde~~n~~~~~~L~~aGv 423 (691)
T PRK05443 347 YESF--DPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQ-VTVLVELKARFDEEANIRWARRLEEAGV 423 (691)
T ss_pred ccCc--hHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCE-EEEEEccCccccHHHHHHHHHHHHHcCC
Confidence 5555 3566678776554 1 67788888999999999999 9999999988877665556678888999
Q ss_pred Eee
Q 045208 162 ATA 164 (176)
Q Consensus 162 ~v~ 164 (176)
+|+
T Consensus 424 ~V~ 426 (691)
T PRK05443 424 HVV 426 (691)
T ss_pred EEE
Confidence 984
No 19
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=69.12 E-value=15 Score=32.87 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=53.6
Q ss_pred CCccCCCChHHHHHhCCCCe-----------eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCc
Q 045208 93 FSAFFATHLHSFLQGAGVDS-----------VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGI 161 (176)
Q Consensus 93 ~saf~~t~l~~~L~~~~i~~-----------~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~ 161 (176)
|..| ..+.+.|++...|- ++.+.=|......|.++|.+ |+|+-|.=+.++.+....--+.|...|+
T Consensus 338 Y~Sf--~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~-V~v~veLkArfde~~ni~wa~~le~aG~ 414 (672)
T TIGR03705 338 YESF--DPVVEFLRQAAEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKE-VTVVVELKARFDEEANIRWARRLEEAGV 414 (672)
T ss_pred ccCH--HHHHHHHHHHhcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCE-EEEEEEehhhccchhhHHHHHHHHHcCC
Confidence 4454 24566777765541 67788899999999999999 9999999999988765555568888999
Q ss_pred Eee
Q 045208 162 ATA 164 (176)
Q Consensus 162 ~v~ 164 (176)
+|+
T Consensus 415 ~vi 417 (672)
T TIGR03705 415 HVV 417 (672)
T ss_pred EEE
Confidence 875
No 20
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=67.35 E-value=17 Score=28.34 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=43.2
Q ss_pred HHHHHhCCCCe---------eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeee
Q 045208 102 HSFLQGAGVDS---------VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATAT 165 (176)
Q Consensus 102 ~~~L~~~~i~~---------~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~ 165 (176)
.+..++.||.. .....++..=...+.+.||+ .+=++|.+-..+.+.....++.++..|..|.+
T Consensus 60 i~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~-~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 60 IDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFD-AIEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp HHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-S-EEEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCC-EEEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 34455677776 33455666777788899999 99999999999999988899999999888866
No 21
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=63.11 E-value=24 Score=31.41 Aligned_cols=71 Identities=21% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCCCccCCCChHHHHHhCCCC-------e----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhc
Q 045208 91 TRFSAFFATHLHSFLQGAGVD-------S----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNF 159 (176)
Q Consensus 91 ~~~saf~~t~l~~~L~~~~i~-------~----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~ 159 (176)
+-|.+|.. ..+.|++.-.| . +..|.=+.....+|.+.|.+ |+|+...-+-+|++..-.=-+.|.+.
T Consensus 349 HPYeSF~~--Vv~fl~qAA~DP~VLAIKqTLYRt~~dSpIV~ALi~AA~nGKq-VtvlVELkARFDEE~NI~WAk~LE~A 425 (696)
T COG0855 349 HPYESFEP--VVEFLRQAAADPDVLAIKQTLYRTSKDSPIVRALIDAAENGKQ-VTVLVELKARFDEEANIHWAKRLERA 425 (696)
T ss_pred CchhhhHH--HHHHHHHhhcCCCeEEEEEEEEecCCCCHHHHHHHHHHHcCCe-EEEEEEEhhhcChhhhhHHHHHHHhC
Confidence 34666633 77777765433 2 78888888999999999999 99999999999988754445678888
Q ss_pred CcEee
Q 045208 160 GIATA 164 (176)
Q Consensus 160 g~~v~ 164 (176)
|++|+
T Consensus 426 GvhVv 430 (696)
T COG0855 426 GVHVV 430 (696)
T ss_pred CcEEE
Confidence 99886
No 22
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=56.67 E-value=56 Score=25.38 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEee
Q 045208 121 QTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATA 164 (176)
Q Consensus 121 ~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~ 164 (176)
.=...+.+.||+ ++=++|.+-+++.+.....++..+..|..+.
T Consensus 75 ~Yl~~~k~lGf~-~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 75 EYLNECDELGFE-AVEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred HHHHHHHHcCCC-EEEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 334457788999 9999999999999988888888886655543
No 23
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=55.46 E-value=55 Score=24.87 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCCcEEEeccccCC------CCH-------HHHHHHHHHHHhcCcEee----eHHHHHHHhh
Q 045208 120 RQTAFDAIALDYQPVTVVVDATAA------ATP-------DVHAANIVDMKNFGIATA----TLQEWSERVA 174 (176)
Q Consensus 120 ~~Ta~~a~~~g~~~v~vv~Da~~~------~~~-------~~h~~~l~~l~~~g~~v~----~~~e~~~~l~ 174 (176)
.--|+.|..|||+ |.|..+-.+. .++ ..|+...+.+...|+.+. +.+++-+.|+
T Consensus 57 ~GLAlAA~rrG~~-vev~~~~~~plfld~vr~~~kk~v~~~v~~~f~~~a~~~gv~~~~~~~~~~~l~~~l~ 127 (207)
T PF11814_consen 57 FGLALAAARRGFK-VEVWVSTDGPLFLDSVRSEEKKEVMELVHEDFREEAEQAGVPVHYRPLSLADLRAALA 127 (207)
T ss_pred HHHHHHHHHcCCc-eEEEECCCCCceeccCCCHHHHHHHHHHHHHHHHHHHHCCCceecCCCCHHHHHHHHH
Confidence 3468899999999 9988876653 221 246777788888888774 3456655554
No 24
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=55.05 E-value=24 Score=20.31 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCcEeeeHHHHHHHhh
Q 045208 149 HAANIVDMKNFGIATATLQEWSERVA 174 (176)
Q Consensus 149 h~~~l~~l~~~g~~v~~~~e~~~~l~ 174 (176)
+-..|+.|...|...+++.++-+.++
T Consensus 14 Y~r~L~~l~~~G~~~vSS~~La~~~g 39 (50)
T PF06971_consen 14 YLRYLEQLKEEGVERVSSQELAEALG 39 (50)
T ss_dssp HHHHHHHHHHTT-SEE-HHHHHHHHT
T ss_pred HHHHHHHHHHcCCeeECHHHHHHHHC
Confidence 45678888899999999999988765
No 25
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=54.36 E-value=6.5 Score=21.04 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=17.0
Q ss_pred CCccCCCChHHHHHhCCCCe
Q 045208 93 FSAFFATHLHSFLQGAGVDS 112 (176)
Q Consensus 93 ~saf~~t~l~~~L~~~~i~~ 112 (176)
|+.|...+|..+|...||..
T Consensus 1 fdtWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 1 FDTWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCCCHHHHHHHHHHcCCCC
Confidence 56777889999999999876
No 26
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=52.61 E-value=1e+02 Score=24.71 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=58.4
Q ss_pred cCCccchhHHHHHHHHHHHHCCCcEEEEEcc--cCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCCCC-CCCee-
Q 045208 12 MDGGKVILPNVIRAVEIARQRGILVVWVVRE--HNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIR-EGDYK- 87 (176)
Q Consensus 12 ~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-~~d~v- 87 (176)
+.|.+..|.-+.+.++ ..|-| ||++++ |++.- ....+ ..|+-+++++... +++.|
T Consensus 13 CaGV~RAI~ive~al~---~~g~p-Iyv~~eIVHN~~V--v~~L~---------------~~g~~fve~l~e~p~~~~VI 71 (294)
T COG0761 13 CAGVDRAIQIVERALE---EYGAP-IYVRHEIVHNRYV--VDRLR---------------EKGAIFVEELDEVPDGATVI 71 (294)
T ss_pred chhHHHHHHHHHHHHH---HcCCC-eEEEeccccCHHH--HHHHH---------------HcCCEeccccccCCCCCEEE
Confidence 5566666665555555 35677 788753 32110 01111 1234455555433 34554
Q ss_pred eecCCCCccCCCChHHHHHhCCCCe-eecCh---hhHHHHHHHHhCCCCcEEEecc
Q 045208 88 LVKTRFSAFFATHLHSFLQGAGVDS-VQTPN---CIRQTAFDAIALDYQPVTVVVD 139 (176)
Q Consensus 88 ~~K~~~saf~~t~l~~~L~~~~i~~-~~t~~---CV~~Ta~~a~~~g~~~v~vv~D 139 (176)
|.-++. +....+.++++|... -+|-- =|...+......||+ ++++-+
T Consensus 72 fsAHGV----s~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~-iIliG~ 122 (294)
T COG0761 72 FSAHGV----SPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYE-IILIGH 122 (294)
T ss_pred EECCCC----CHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCE-EEEEcc
Confidence 434433 457888999999888 33322 244677788888999 999987
No 27
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=50.51 E-value=1e+02 Score=24.21 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=39.5
Q ss_pred CChHHHHHhCCCCe----eecC--hhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHH
Q 045208 99 THLHSFLQGAGVDS----VQTP--NCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVD 155 (176)
Q Consensus 99 t~l~~~L~~~~i~~----~~t~--~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~ 155 (176)
.-|.++|.++|++. +..| --+....+.|.++ ++ +++++-..+--.++.-..+++.
T Consensus 24 ~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D-~vI~tGGLGPT~DDiT~e~vAk 84 (255)
T COG1058 24 AFLADELTELGVDLARITTVGDNPDRIVEALREASER-AD-VVITTGGLGPTHDDLTAEAVAK 84 (255)
T ss_pred HHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CC-EEEECCCcCCCccHhHHHHHHH
Confidence 34889999999997 2222 2344677888888 99 9999999987766654444443
No 28
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=50.36 E-value=23 Score=28.32 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=29.5
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcc
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVRE 42 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~ 42 (176)
|||.--+|++. ...-+++.++++.|.+.++|+|+..+.
T Consensus 128 ~D~~f~gGS~g----~~~~eKi~r~~e~A~~~~lPlV~l~ds 165 (292)
T PRK05654 128 MDFSFMGGSMG----SVVGEKIVRAVERAIEEKCPLVIFSAS 165 (292)
T ss_pred EecccccCCcc----HHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45555567765 567788999999999999998887653
No 29
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=49.61 E-value=36 Score=24.70 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeHHHHHHHhh
Q 045208 118 CIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEWSERVA 174 (176)
Q Consensus 118 CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~~e~~~~l~ 174 (176)
.|..-+.....++.+ |+||++ |.... ......|+.++++++++..+.
T Consensus 82 ~Ie~~v~~~~~~~~~-v~VVTS-----D~~iq----~~~~~~GA~~iss~ef~~~l~ 128 (166)
T PF05991_consen 82 YIERLVRELKNRPRQ-VTVVTS-----DREIQ----RAARGRGAKRISSEEFLRELK 128 (166)
T ss_pred HHHHHHHHhccCCCe-EEEEeC-----CHHHH----HHHhhCCCEEEcHHHHHHHHH
Confidence 334445555666787 888864 22221 112467889999999887764
No 30
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=48.52 E-value=52 Score=23.76 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeH
Q 045208 120 RQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 120 ~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
+..||.+..+|++ |+|+.=.-.....+.+...++.++.+|..++..
T Consensus 42 l~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 42 LVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp HHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred HHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 4568889999999 999332222234566788889999999888763
No 31
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=47.44 E-value=37 Score=27.96 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=29.6
Q ss_pred hHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeee
Q 045208 119 IRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATAT 165 (176)
Q Consensus 119 V~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~ 165 (176)
+.....++.++|.+ |.++-|+.+. ...++.|+..|+++..
T Consensus 65 i~~aL~~aa~rGV~-Vril~D~~~~------~~~~~~L~~~Gv~v~~ 104 (369)
T PHA03003 65 ILDKLKEAAESGVK-VTILVDEQSG------DKDEEELQSSNINYIK 104 (369)
T ss_pred HHHHHHHhccCCCe-EEEEecCCCC------CccHHHHHHcCCEEEE
Confidence 45566677889999 9999998642 3345678888888754
No 32
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=47.18 E-value=29 Score=27.69 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=29.1
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcc
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVRE 42 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~ 42 (176)
|||.--+|++. ....+++.++++.|.+.++|+|+..+.
T Consensus 127 ~D~~f~gGSmg----~~~geKi~r~~e~A~~~~lPlV~l~dS 164 (285)
T TIGR00515 127 FDFAFMGGSMG----SVVGEKFVRAIEKALEDNCPLIIFSAS 164 (285)
T ss_pred EeccccCCCcc----HHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34554466664 567889999999999999999988653
No 33
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=45.64 E-value=24 Score=23.22 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=27.1
Q ss_pred cCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEc
Q 045208 4 IADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVR 41 (176)
Q Consensus 4 ~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~ 41 (176)
+|-+|-|.. ....++...++++..|+.|.+++++..
T Consensus 3 ~D~dGvl~~--g~~~ipga~e~l~~L~~~g~~~~~lTN 38 (101)
T PF13344_consen 3 FDLDGVLYN--GNEPIPGAVEALDALRERGKPVVFLTN 38 (101)
T ss_dssp EESTTTSEE--TTEE-TTHHHHHHHHHHTTSEEEEEES
T ss_pred EeCccEeEe--CCCcCcCHHHHHHHHHHcCCCEEEEeC
Confidence 344677653 556799999999999999999888853
No 34
>PF12200 DUF3597: Domain of unknown function (DUF3597); InterPro: IPR022016 This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 126 and 281 amino acids in length. The function of this domain is unknown. The structure of this domain has been found to contain five helices with a long flexible loop between helices one and two. ; PDB: 2GQB_A.
Probab=44.99 E-value=8 Score=26.83 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=35.4
Q ss_pred CCCChHHHHHhCCCCe-eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEe
Q 045208 97 FATHLHSFLQGAGVDS-VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIAT 163 (176)
Q Consensus 97 ~~t~l~~~L~~~~i~~-~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v 163 (176)
|.|.+.++|+-.|++. +. +--.-|.+.||. .- .+..++.|-..|.+.|+.|...|..|
T Consensus 68 WrtSIVDLlKlLglDSSl~------aRkeLA~eL~~~-~~--~~dsA~~NiwLhk~Vm~kLA~NGGkv 126 (127)
T PF12200_consen 68 WRTSIVDLLKLLGLDSSLA------ARKELAKELGYT-GD--YNDSASMNIWLHKQVMQKLAENGGKV 126 (127)
T ss_dssp TTT-HHHHHHHT----SHH------HHHHHHHHHT----S--S-HHHHHHHHHHHHHHHHHGGGSEE-
T ss_pred cHHHHHHHHHHcCCCCCHH------HHHHHHHHhCCC-CC--CCccHHHHHHHHHHHHHHHHHhCCCC
Confidence 5788999999999887 32 112345566776 22 55666777789999999999998775
No 35
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=44.69 E-value=11 Score=30.99 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=45.5
Q ss_pred hHHHHHhCCCCe-----------eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEee
Q 045208 101 LHSFLQGAGVDS-----------VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATA 164 (176)
Q Consensus 101 l~~~L~~~~i~~-----------~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~ 164 (176)
+.+.|++.-.|- ++.+.=|......|.+.|-+ |+|+-..=+-+|++.--.--+.|...|++|+
T Consensus 23 vv~fl~eAA~DP~V~aIk~TLYR~a~~S~iv~aLi~AA~nGK~-Vtv~vELkARFDEe~Ni~Wa~~Le~aGv~Vi 96 (352)
T PF13090_consen 23 VVDFLREAAEDPDVLAIKITLYRVASNSPIVNALIEAAENGKQ-VTVLVELKARFDEENNIHWAKRLEEAGVHVI 96 (352)
T ss_dssp HHHHHHHHCC-TTEEEEEEEESSS-TT-HHHHHHHHHHHTT-E-EEEEESTTSSSTTCCCCCCCHHHHHCT-EEE
T ss_pred HHHHHHHHhcCCCccEEEEEEEecCCCCHHHHHHHHHHHcCCE-EEEEEEEeccccHHHHhHHHhhHHhcCeEEE
Confidence 556777654442 88888899999999999999 9999999999987753333356788888886
No 36
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=44.21 E-value=78 Score=23.06 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=44.8
Q ss_pred CCCChHHHHHhCCCCe-eec-------C---hhhHHHHHHHHhCCCCcEEEeccccC-CCCHHHHHHHHHHHHhcCcEee
Q 045208 97 FATHLHSFLQGAGVDS-VQT-------P---NCIRQTAFDAIALDYQPVTVVVDATA-AATPDVHAANIVDMKNFGIATA 164 (176)
Q Consensus 97 ~~t~l~~~L~~~~i~~-~~t-------~---~CV~~Ta~~a~~~g~~~v~vv~Da~~-~~~~~~h~~~l~~l~~~g~~v~ 164 (176)
++....+.+++.|... ..+ . .-+...++.....| . |++..|.-. ....+.-...|..|+..|-+++
T Consensus 108 ~~~~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i~~~~~~~~~~g-~-Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~v 185 (191)
T TIGR02764 108 FNKAVLKAAESLGYTVVHWSVDSRDWKNPGVESIVDRVVKNTKPG-D-IILLHASDSAKQTVKALPTIIKKLKEKGYEFV 185 (191)
T ss_pred CCHHHHHHHHHcCCeEEEecCCCCccCCCCHHHHHHHHHhcCCCC-C-EEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEE
Confidence 3567888899999886 111 1 11223344444445 5 888887311 1123344667888889999999
Q ss_pred eHHHHH
Q 045208 165 TLQEWS 170 (176)
Q Consensus 165 ~~~e~~ 170 (176)
+.+|++
T Consensus 186 tl~~l~ 191 (191)
T TIGR02764 186 TISELI 191 (191)
T ss_pred EHHHhC
Confidence 998864
No 37
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=43.98 E-value=34 Score=30.13 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=31.0
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEccc
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREH 43 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~ 43 (176)
|||.--+|.+. ....+++.++++.|.+.++|+|+..+..
T Consensus 136 ~D~tv~GGs~g----~~~~~Ki~r~~elA~~~~lPlV~l~DSg 174 (569)
T PLN02820 136 NDPTVKGGTYY----PITVKKHLRAQEIAAQCRLPCIYLVDSG 174 (569)
T ss_pred ECCCccCCCCC----HHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46666566664 6677899999999999999999997743
No 38
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=41.88 E-value=87 Score=23.24 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=28.8
Q ss_pred HHHHHhCCCCcEEEecc----ccCCCC----HHHHHHHHHHHHhcCcEe
Q 045208 123 AFDAIALDYQPVTVVVD----ATAAAT----PDVHAANIVDMKNFGIAT 163 (176)
Q Consensus 123 a~~a~~~g~~~v~vv~D----a~~~~~----~~~h~~~l~~l~~~g~~v 163 (176)
.+...+.||. ++|+++ +.+.++ ...|+..+..++..|+++
T Consensus 40 l~~l~~~gy~-lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~i 87 (181)
T COG0241 40 LLKLQRAGYK-LVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKI 87 (181)
T ss_pred HHHHHhCCCe-EEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCcc
Confidence 3445588999 999998 344444 346788888888888754
No 39
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=40.81 E-value=1.1e+02 Score=24.62 Aligned_cols=63 Identities=21% Similarity=0.160 Sum_probs=39.1
Q ss_pred HHHHhCCCCe-eec----ChhhHHHHHHHHhCCCCcEEEeccccCC--CCHHHHHHHHHHHHhcCcEeeeH
Q 045208 103 SFLQGAGVDS-VQT----PNCIRQTAFDAIALDYQPVTVVVDATAA--ATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 103 ~~L~~~~i~~-~~t----~~CV~~Ta~~a~~~g~~~v~vv~Da~~~--~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
+..+++|+.+ +++ ..=..++|..+...|++ ++++.+.-.. ..+......+..|..+|++|+..
T Consensus 60 ~~a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G~~-~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v 129 (337)
T PRK12390 60 PDALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMK-CVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLV 129 (337)
T ss_pred HHHHHcCCCEEEEeCCCccHHHHHHHHHHHHcCCe-EEEEeCCCCCCccchhhccccHHHHHHCCCEEEEe
Confidence 3344678887 443 35567888889999998 8888654221 11222233455677788888664
No 40
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=38.32 E-value=28 Score=21.88 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=17.3
Q ss_pred CCCCCcccc-cCCCCCCCCeeeecCCCCc
Q 045208 68 KGSRGAELV-DGLVIREGDYKLVKTRFSA 95 (176)
Q Consensus 68 ~g~~~~~~~-~~l~~~~~d~v~~K~~~sa 95 (176)
++.|+.+++ |++.+. .+..+.|++|+.
T Consensus 49 ~~~W~~~vy~~ei~~~-~~~l~k~p~y~~ 76 (76)
T PRK01271 49 PESWQAEVWDAEIAPQ-MDALIKKPGYSM 76 (76)
T ss_pred HHHhhHHhcCcccccC-hhheecCCCCCC
Confidence 345555555 777774 466788888863
No 41
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=38.09 E-value=1.2e+02 Score=20.11 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=35.4
Q ss_pred CCChHHHHHhCCCCe---eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEe
Q 045208 98 ATHLHSFLQGAGVDS---VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIAT 163 (176)
Q Consensus 98 ~t~l~~~L~~~~i~~---~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v 163 (176)
.+++.+++....++- ......+..-+..++.+|.+ |+...=..-+ +....+...+..++.|+++
T Consensus 48 ~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~-VVt~nk~ala-~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 48 TTDLEELIDDPDIDVVVECTSSEAVAEYYEKALERGKH-VVTANKGALA-DEALYEELREAARKNGVRI 114 (117)
T ss_dssp ESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCE-EEES-HHHHH-SHHHHHHHHHHHHHHT-EE
T ss_pred cCCHHHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCe-EEEECHHHhh-hHHHHHHHHHHHHHcCCEE
Confidence 345566665445555 44444555567888999998 8777665555 4444444444444556554
No 42
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=36.79 E-value=60 Score=24.91 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=30.1
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~ 40 (176)
|++-+|.|...+.. +-+...+.|+.+++.|++|+.+.
T Consensus 7 ~~DlDGTLl~~~~~-i~~~~~~al~~~~~~g~~v~iaT 43 (264)
T COG0561 7 AFDLDGTLLDSNKT-ISPETKEALARLREKGVKVVLAT 43 (264)
T ss_pred EEcCCCCccCCCCc-cCHHHHHHHHHHHHCCCEEEEEC
Confidence 45567888765555 99999999999999999988773
No 43
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=36.24 E-value=51 Score=26.07 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=28.7
Q ss_pred cCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEc
Q 045208 4 IADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVR 41 (176)
Q Consensus 4 ~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~ 41 (176)
++-+|.++ .....++...+.|+..+++|.|++|+..
T Consensus 13 ~DlDGvl~--~G~~~ipga~e~l~~L~~~g~~~iflTN 48 (269)
T COG0647 13 FDLDGVLY--RGNEAIPGAAEALKRLKAAGKPVIFLTN 48 (269)
T ss_pred EcCcCceE--eCCccCchHHHHHHHHHHcCCeEEEEeC
Confidence 34456654 5677889999999999999999999854
No 44
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=36.08 E-value=84 Score=21.93 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCcEEEeccc--cCCCCHHHHHHHHHHHHhcCcEeeeHH-HHHH
Q 045208 121 QTAFDAIALDYQPVTVVVDA--TAAATPDVHAANIVDMKNFGIATATLQ-EWSE 171 (176)
Q Consensus 121 ~Ta~~a~~~g~~~v~vv~Da--~~~~~~~~h~~~l~~l~~~g~~v~~~~-e~~~ 171 (176)
.++....+.|++ |.|=+.+ -+.++++.+ ...|+.|+++. |++.
T Consensus 18 ~~v~~L~~~G~~-V~VE~gaG~~a~fsD~~Y-------~~aGA~I~~~~~ev~~ 63 (136)
T PF05222_consen 18 EDVKKLVKLGHE-VLVESGAGEGAGFSDEEY-------EEAGAEIVSRAEEVYS 63 (136)
T ss_dssp HHHHHHHHTTSE-EEEETTTTGGGTB-HHHH-------HHTTEEEESSHHHHHT
T ss_pred HHHHHHHhCCCE-EEEECCCCCcCcccHHHH-------hhCCcEEecCchhhcc
Confidence 456677888999 8888888 666766653 45788888876 6654
No 45
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=35.90 E-value=1.6e+02 Score=23.83 Aligned_cols=65 Identities=22% Similarity=0.110 Sum_probs=40.8
Q ss_pred hHHHHHhCCCCe-eec----ChhhHHHHHHHHhCCCCcEEEeccccCCCCH--HHHHHHHHHHHhcCcEeeeH
Q 045208 101 LHSFLQGAGVDS-VQT----PNCIRQTAFDAIALDYQPVTVVVDATAAATP--DVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 101 l~~~L~~~~i~~-~~t----~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~--~~h~~~l~~l~~~g~~v~~~ 166 (176)
+....+++|+.+ +++ ..=..++|..+..+|++ ++++.+-..+.+. ......+..|..+|++|+.+
T Consensus 57 ~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~-~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v 128 (337)
T TIGR01274 57 LIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMK-CVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLD 128 (337)
T ss_pred HHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCCc-EEEEeccCCCccccchhccchHHHHHHcCCEEEEe
Confidence 333345678887 432 24456778888999998 8888765433221 12244566678889888654
No 46
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=35.81 E-value=1.7e+02 Score=23.03 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=45.1
Q ss_pred CCCChHHHHHhCCCCe----eec-Ch------hhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeee
Q 045208 97 FATHLHSFLQGAGVDS----VQT-PN------CIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATAT 165 (176)
Q Consensus 97 ~~t~l~~~L~~~~i~~----~~t-~~------CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~ 165 (176)
++..+.+++++.|... +.+ |- -+...++.....| . |++..|... +.+.-...|..++..|-+++|
T Consensus 187 ~n~~~~~~l~~~G~~~v~Wsvd~~Dw~~~~~~~i~~~v~~~~~~G-~-IILmHd~~~--T~~aL~~iI~~Lk~kGy~fvt 262 (268)
T TIGR02873 187 FNDNVVQIAADLQMGTIMWTVDTIDWKNPSPSVMVNRVLSKIHPG-A-MVLMHPTAS--STEGLEEMITIIKEKGYKIGT 262 (268)
T ss_pred CCHHHHHHHHHCCCeEEEeccCCCCCCCCCHHHHHHHHHhcCCCC-c-EEEEcCCcc--HHHHHHHHHHHHHHCCCEEEe
Confidence 3567888899999887 111 11 1122233322333 5 888888642 345567788889999999999
Q ss_pred HHHHH
Q 045208 166 LQEWS 170 (176)
Q Consensus 166 ~~e~~ 170 (176)
..|++
T Consensus 263 l~ell 267 (268)
T TIGR02873 263 ITELL 267 (268)
T ss_pred HHHhh
Confidence 99876
No 47
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=35.78 E-value=44 Score=28.32 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=29.4
Q ss_pred Ccccc---CCccchhHHHHHHHHHHHHCCCcEEEEEcc
Q 045208 8 GLVKM---DGGKVILPNVIRAVEIARQRGILVVWVVRE 42 (176)
Q Consensus 8 g~l~~---~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~ 42 (176)
|.|.. -|++++-+.+..|+++.++.|.+|||+.|.
T Consensus 309 GRlTLI~RmGa~kV~~~LP~li~aV~~~G~~VvW~cDP 346 (443)
T TIGR01358 309 GRLTLISRMGADKIADKLPPLLRAVKAAGRRVVWVCDP 346 (443)
T ss_pred ceEEEEeccCchHHHHhHHHHHHHHHHcCCceEEeecC
Confidence 55542 467889999999999999999999999874
No 48
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=35.20 E-value=59 Score=26.12 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=28.7
Q ss_pred CccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcc
Q 045208 2 DFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVRE 42 (176)
Q Consensus 2 dF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~ 42 (176)
||.--+|++. ...-++|.++++.|.+.++|+|+..+.
T Consensus 141 Dftf~gGSmG----~v~geKi~ra~e~A~~~rlPlV~l~~S 177 (296)
T CHL00174 141 DFQFMGGSMG----SVVGEKITRLIEYATNESLPLIIVCAS 177 (296)
T ss_pred CCcccccCcC----HHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 4444466664 667889999999999999999888653
No 49
>PRK06381 threonine synthase; Validated
Probab=35.20 E-value=2.1e+02 Score=22.74 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=37.0
Q ss_pred HHHHHhCCCCe-e--ecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeH
Q 045208 102 HSFLQGAGVDS-V--QTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 102 ~~~L~~~~i~~-~--~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
...++++|.++ + ++-.=-.+.|..+...|++ ++++.+...+ ...++.|+.+|++|+..
T Consensus 55 l~~a~~~g~~~lv~aSsGN~g~alA~~aa~~G~~-~~ivvp~~~~------~~~~~~l~~~GA~V~~~ 115 (319)
T PRK06381 55 VRRAMRLGYSGITVGTCGNYGASIAYFARLYGLK-AVIFIPRSYS------NSRVKEMEKYGAEIIYV 115 (319)
T ss_pred HHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCc-EEEEECCCCC------HHHHHHHHHcCCEEEEc
Confidence 33455667666 3 3333344666777788998 8887775432 24456788899988754
No 50
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=34.91 E-value=1.6e+02 Score=21.60 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=32.7
Q ss_pred ChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeH
Q 045208 116 PNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 116 ~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
|.-+.+++..+...+-. ++++- +.......|...+..|+++|+.++..
T Consensus 98 D~Llt~~a~~~L~~~~p-v~i~P--~~m~~~~~~~~Nl~~L~~~G~~ii~P 145 (181)
T TIGR00421 98 DNLITRAADVCLKERRK-LVLVP--RETPLNSIHLENMLRLSRMGAIILPP 145 (181)
T ss_pred CCHHHHHHHHHHhcCCC-EEEEe--CCCcCCHHHHHHHHHHHHCCCEEECC
Confidence 33444555556667776 77766 34444567788899999999988764
No 51
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=34.82 E-value=1.8e+02 Score=21.12 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCChHHHHHhCCCCe-----eecChhhHHHHH-HHHhCCCCcEEEeccccCCCCHHHHHHHHH
Q 045208 98 ATHLHSFLQGAGVDS-----VQTPNCIRQTAF-DAIALDYQPVTVVVDATAAATPDVHAANIV 154 (176)
Q Consensus 98 ~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~-~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~ 154 (176)
+.-|..+|++.|++. +.-+.-....++ .+.+ .++ +++.+-+++.-..+.-..++.
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~-~~d-lVIttGG~G~t~~D~t~ea~~ 81 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASE-RAD-LVITTGGLGPTHDDLTREAVA 81 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-CCC-EEEECCCCCCCCCChHHHHHH
Confidence 345888999999876 333444344444 4444 688 999998877655444344433
No 52
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=34.37 E-value=57 Score=28.33 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=27.8
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcc
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVRE 42 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~ 42 (176)
||+..-+|.|. ..-.+++.++++.|.+.++|||+..+.
T Consensus 322 nd~~~~~G~~~----~~~~~K~~r~i~~a~~~~lPlV~lvDs 359 (512)
T TIGR01117 322 NQPKVMAGCLD----IDSSDKIARFIRFCDAFNIPIVTFVDV 359 (512)
T ss_pred eccccccCCCC----HHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 34443345544 556788999999999999999998764
No 53
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=34.29 E-value=74 Score=23.60 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=27.3
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~ 40 (176)
|++-+|.|.-.+ ...++...+.|+.++++|++++.+.
T Consensus 3 ~~DlDGTLL~~~-~~~~~~~~~~l~~l~~~gi~~~i~T 39 (221)
T TIGR02463 3 FSDLDGTLLDSH-SYDWQPAAPWLTRLQEAGIPVILCT 39 (221)
T ss_pred EEeCCCCCcCCC-CCCcHHHHHHHHHHHHCCCeEEEEc
Confidence 455678886443 3466667899999999999988773
No 54
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=33.89 E-value=72 Score=24.17 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=27.8
Q ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEee
Q 045208 130 DYQPVTVVVDATAAATPDVHAANIVDMKNFGIATA 164 (176)
Q Consensus 130 g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~ 164 (176)
+-. |+|++|+....+.+.-...|+.|...+.+|+
T Consensus 150 ~t~-vvIiSDg~~~~~~~~~~~~l~~l~~r~~rvi 183 (222)
T PF05762_consen 150 RTT-VVIISDGWDTNDPEPLAEELRRLRRRGRRVI 183 (222)
T ss_pred CcE-EEEEecccccCChHHHHHHHHHHHHhCCEEE
Confidence 456 9999999777777777888999998887764
No 55
>PRK03670 competence damage-inducible protein A; Provisional
Probab=33.74 E-value=2e+02 Score=22.51 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=32.5
Q ss_pred CCChHHHHHhCCCCe----e-ecChhh-HHHHHHHHhCCCCcEEEeccccCCCCHH
Q 045208 98 ATHLHSFLQGAGVDS----V-QTPNCI-RQTAFDAIALDYQPVTVVVDATAAATPD 147 (176)
Q Consensus 98 ~t~l~~~L~~~~i~~----~-~t~~CV-~~Ta~~a~~~g~~~v~vv~Da~~~~~~~ 147 (176)
+.-|.+.|+..|++. + --+.-. ..+.+.+..++++ +++.+-.++.-..+
T Consensus 22 ~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~D-lVIttGGlGpt~dD 76 (252)
T PRK03670 22 SAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPE-VLVISGGLGPTHDD 76 (252)
T ss_pred HHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCC-EEEECCCccCCCCC
Confidence 345888899999987 2 233333 3444556677898 99999877655433
No 56
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=33.65 E-value=1.1e+02 Score=20.00 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=46.2
Q ss_pred cCCCCccCCCChHHHHHhCCCCe--eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHH-hcCcEeeeH
Q 045208 90 KTRFSAFFATHLHSFLQGAGVDS--VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMK-NFGIATATL 166 (176)
Q Consensus 90 K~~~saf~~t~l~~~L~~~~i~~--~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~-~~g~~v~~~ 166 (176)
+.+|.-|...+-..+|++.|++. +....--...+.+....|- +-+|-+-........-...|.+++ ..|+-++|+
T Consensus 24 ~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~--id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 24 ELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGE--IQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred HCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHcCC--eEEEEECCCCCccCccHHHHHHHHHHhCCCEEec
Confidence 34677776777888999999886 3222111244556665553 323322222222111133455555 679888888
Q ss_pred HHHHHHhh
Q 045208 167 QEWSERVA 174 (176)
Q Consensus 167 ~e~~~~l~ 174 (176)
-+....+.
T Consensus 102 ~~ta~a~~ 109 (110)
T cd01424 102 LDTARAAV 109 (110)
T ss_pred HHHHHHHh
Confidence 87776654
No 57
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=32.98 E-value=73 Score=24.13 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=27.6
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
|++-+|.|.-. ..+.+...+.|+..+++|++++.+
T Consensus 3 ~~DlDGTLl~~--~~~~~~~~~ai~~l~~~G~~~vi~ 37 (225)
T TIGR02461 3 FTDLDGTLLPP--GYEPGPAREALEELKDLGFPIVFV 37 (225)
T ss_pred EEeCCCCCcCC--CCCchHHHHHHHHHHHCCCEEEEE
Confidence 45668888652 346778899999999999998877
No 58
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=32.76 E-value=48 Score=30.82 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCCC----CCCCeeeecCC
Q 045208 17 VILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVI----REGDYKLVKTR 92 (176)
Q Consensus 17 ~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~----~~~d~v~~K~~ 92 (176)
.-++.+..+|+.++++|+.||-+-....|.+...+.|.++ -++-+-...+++++.. ++.-++|+.+.
T Consensus 805 ~~~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~~t~~fg~~---------g~~rs~a~~~~~~~~~~~~~y~~f~~~denk 875 (912)
T TIGR02171 805 ENMNSLKAFIDETAKKGVKVIGTIFPQSPGYKNTGSFGRY---------GPRRSIAKKIIDSFKKMEKTYPHFILFDENK 875 (912)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCCCCCccccCccccc---------CcchhhHHHHHHHHHHHHhhCCceEEEecCc
Confidence 3378889999999999999999988888888776666555 1233334455555543 23344666554
Q ss_pred CC
Q 045208 93 FS 94 (176)
Q Consensus 93 ~s 94 (176)
++
T Consensus 876 ~g 877 (912)
T TIGR02171 876 DG 877 (912)
T ss_pred CC
Confidence 33
No 59
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=32.69 E-value=62 Score=22.74 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.1
Q ss_pred CccchhHHHHHHHHHHHHCCCcEEEEE
Q 045208 14 GGKVILPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 14 ~~~~ii~~i~~li~~~r~~~~~Vi~~~ 40 (176)
..+.+..++.++++.+|+.+.+||++.
T Consensus 82 ~~~~~~~~l~~li~~~~~~~~~vil~~ 108 (177)
T cd01822 82 PPDQTRANLRQMIETAQARGAPVLLVG 108 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 356789999999999999998888874
No 60
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=32.41 E-value=53 Score=28.10 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=26.9
Q ss_pred CCccchhHHHHHHHHHHHHCCCcEEEEEcc
Q 045208 13 DGGKVILPNVIRAVEIARQRGILVVWVVRE 42 (176)
Q Consensus 13 ~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~ 42 (176)
-|++++-+.+..||++.++.|.+|||+.|.
T Consensus 337 mGa~kV~~~LP~Li~aV~~~G~~VvW~cDP 366 (474)
T PLN02291 337 MGAEKLRVKLPHLIRAVRRAGQIVTWVSDP 366 (474)
T ss_pred cchHHHHHHHHHHHHHHHHcCCceEEeecC
Confidence 467889999999999999999999999874
No 61
>COG3680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.36 E-value=48 Score=25.35 Aligned_cols=33 Identities=15% Similarity=0.425 Sum_probs=27.5
Q ss_pred cCCccchhHHHHHHHHHHHHCCCcEEEEEcccC
Q 045208 12 MDGGKVILPNVIRAVEIARQRGILVVWVVREHN 44 (176)
Q Consensus 12 ~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~ 44 (176)
..+..+++.+=.+.|..+|++|..|||.-+.|.
T Consensus 50 ~~d~~~~~srKlk~i~e~r~agl~iih~i~~hg 82 (259)
T COG3680 50 SQDSGEIISRKLKAISECRKAGLYIIHLIEVHG 82 (259)
T ss_pred ccccchHHHHHHHHHHHHHHcCCeeeeeehhhc
Confidence 345678999999999999999999998876554
No 62
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=31.92 E-value=1.8e+02 Score=22.05 Aligned_cols=55 Identities=7% Similarity=0.051 Sum_probs=39.7
Q ss_pred ChhhHHHHHHHHhCCCCcEEEeccccCCCC------H---HHHHHHHHHHHhcCcEeeeHHHHHH
Q 045208 116 PNCIRQTAFDAIALDYQPVTVVVDATAAAT------P---DVHAANIVDMKNFGIATATLQEWSE 171 (176)
Q Consensus 116 ~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~------~---~~h~~~l~~l~~~g~~v~~~~e~~~ 171 (176)
+.=+...+..+.-.|-+ |+++.|++.... . ...+.-++.|..+|+.+++..++..
T Consensus 76 d~~~~~~I~~~LL~GK~-V~v~~eg~e~~~y~~~~p~~l~~~~~~y~~kL~sfGIk~~~~~~~~~ 139 (207)
T TIGR02536 76 TNEKEKFIIAFLLEGKP-IYILKPGIEYSKYENTAPYALKQKFQEYEEKLQSFGIEFIDSENYIT 139 (207)
T ss_pred CCHHHHHHHHHHHCCCe-EEEEecccchhccCccCCHHHHHHHHHHHHHHHHcCeEEeccchhhh
Confidence 33455678899999999 999998877632 1 2334456678889999988877643
No 63
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=31.79 E-value=1.2e+02 Score=18.39 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=31.9
Q ss_pred HHHHHHhCCCCcEEEeccc--cC-CCCHHHHHHHHHHHHhcCcEeeeH
Q 045208 122 TAFDAIALDYQPVTVVVDA--TA-AATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 122 Ta~~a~~~g~~~v~vv~Da--~~-~~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
.|..+..+|.+ |+++.-. .. ..+++......+.|...|+++.+.
T Consensus 14 ~A~~l~~~g~~-vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 14 LAEALAELGKE-VTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp HHHHHHHTTSE-EEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEES
T ss_pred HHHHHHHhCcE-EEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 34455668888 8887654 22 457888888889999999988763
No 64
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=31.49 E-value=72 Score=17.82 Aligned_cols=27 Identities=11% Similarity=-0.080 Sum_probs=21.5
Q ss_pred ccchhHHHHHHHHHHHHCCCcEEEEEcc
Q 045208 15 GKVILPNVIRAVEIARQRGILVVWVVRE 42 (176)
Q Consensus 15 ~~~ii~~i~~li~~~r~~~~~Vi~~~~~ 42 (176)
...+-.+..++++.+.+.+ ||+.++..
T Consensus 4 ~te~r~~~~~~l~~v~~~~-pv~It~~g 30 (52)
T TIGR01552 4 LSEAKNKLGELLKRVRDGE-PVTITKRG 30 (52)
T ss_pred HHHHHHHHHHHHHHHHCCC-CEEEEECC
Confidence 3456778899999998877 99999753
No 65
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=31.45 E-value=66 Score=20.65 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHCCCcEEEEE
Q 045208 21 NVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 21 ~i~~li~~~r~~~~~Vi~~~ 40 (176)
.+..+...+.++++|++|+.
T Consensus 43 vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 43 LMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred HHHHHHHHHHHcCCCEEEEC
Confidence 55677778889999999994
No 66
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=31.32 E-value=69 Score=22.81 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=22.6
Q ss_pred CccchhHHHHHHHHHHHHCCCcEEEEE
Q 045208 14 GGKVILPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 14 ~~~~ii~~i~~li~~~r~~~~~Vi~~~ 40 (176)
..+.+.+++.++++.+|+.+.++|++.
T Consensus 77 ~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 77 SLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 456789999999999999998877763
No 67
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=30.92 E-value=1.2e+02 Score=25.54 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=37.1
Q ss_pred HhCCCCe-e-ecC--hhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeH
Q 045208 106 QGAGVDS-V-QTP--NCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 106 ~~~~i~~-~-~t~--~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
+++|.+. + .|. .=-.++|..+...|++ ++|+.... +.+.....+..|+.+|++|+..
T Consensus 106 ~~~G~~~vI~etgsGnhG~A~A~aaa~~Gl~-~~I~m~~~---d~~~q~~nv~~mr~~GAeVi~v 166 (402)
T PRK13028 106 KRMGKKRLIAETGAGQHGVATATAAALFGLE-CEIYMGEV---DIERQHPNVFRMKLLGAEVVPV 166 (402)
T ss_pred HHcCCCeEEEecCcHHHHHHHHHHHHHcCCC-EEEEECCC---cchhhHHHHHHHHHcCCEEEEE
Confidence 3456655 3 232 2344677788899999 99986543 2233345678899999999754
No 68
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=30.91 E-value=73 Score=27.65 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=29.1
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcc
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVRE 42 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~ 42 (176)
|||.--+|++. ....+++.++++.|.+++.|+|+..+.
T Consensus 89 ~D~t~~gGS~g----~~~~~K~~r~~e~A~~~~lPlV~l~dS 126 (512)
T TIGR01117 89 QDFTVMGGSLG----EMHAAKIVKIMDLAMKMGAPVVGLNDS 126 (512)
T ss_pred ECCcccccCCC----HHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 35555566664 567788899999999999999988764
No 69
>PF01225 Mur_ligase: Mur ligase family, catalytic domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR000713 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the N-terminal domain of several stage 2 Mur ligases, including: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The N-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases C-terminal domain (see IPR004101 from INTERPRO).; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 2XJA_A 2WTZ_A 1E8C_A 3HN7_A 3EAG_A 1J6U_A 2AM2_A 2AM1_A 2F00_B 1GQY_B ....
Probab=30.85 E-value=95 Score=19.12 Aligned_cols=47 Identities=21% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeHHHHHHHhhc
Q 045208 125 DAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEWSERVAD 175 (176)
Q Consensus 125 ~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~~e~~~~l~~ 175 (176)
+|.++|-. +++.++... .+.+ ...+......++.|.++.+++..|+.
T Consensus 34 ~a~~~Ga~-~~~~~~~~~-~~~~--~~~~~~~~~~~i~v~~~~~~L~~la~ 80 (83)
T PF01225_consen 34 DAIAKGAA-AVVVDKDAS-ISPD--NPEVPAADVPVIPVEDTRQALGELAA 80 (83)
T ss_dssp HHHHTT-E-EEESSSGGT-STTT--SHHHHHHHHTTEEEEEHHHHHHHHHH
T ss_pred HHHHCCCe-EEEEcCccc-cccc--cHhHHhcCCCEEEECCHHHHHHHHHh
Confidence 48999998 888888773 3333 22233445568888899999998875
No 70
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=30.66 E-value=61 Score=27.48 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=25.0
Q ss_pred Ccccc---CCccchhHHHHHHHHHHHHCCCcEEEEEccc
Q 045208 8 GLVKM---DGGKVILPNVIRAVEIARQRGILVVWVVREH 43 (176)
Q Consensus 8 g~l~~---~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~ 43 (176)
|.+.. -|++.+-+.+..||++.++.|.+|||+.|.-
T Consensus 312 GRltlI~RmGa~~v~~~LP~li~aV~~~g~~vvW~cDPM 350 (439)
T PF01474_consen 312 GRLTLITRMGADKVRERLPPLIEAVQAAGHPVVWSCDPM 350 (439)
T ss_dssp TSEEEEE---TTTHHHHHHHHHHHHHTTT---EEEE-TS
T ss_pred CeEEEEecCCcHHHHHHhHHHHHHHHHCCCceEEeccCC
Confidence 55542 4678999999999999999999999998743
No 71
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=30.44 E-value=93 Score=22.96 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=28.6
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
|++-+|.|.-.+ ..+-+...+.+..+++.|..++..
T Consensus 2 ~~DlDGTLl~~~-~~i~~~~~~al~~l~~~g~~~~i~ 37 (254)
T PF08282_consen 2 FSDLDGTLLNSD-GKISPETIEALKELQEKGIKLVIA 37 (254)
T ss_dssp EEECCTTTCSTT-SSSCHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCceecCC-CeeCHHHHHHHHhhcccceEEEEE
Confidence 456688885444 448899999999999999998777
No 72
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=30.05 E-value=1.1e+02 Score=25.67 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=37.5
Q ss_pred HhCCCCe-ee-cC--hhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeH
Q 045208 106 QGAGVDS-VQ-TP--NCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 106 ~~~~i~~-~~-t~--~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
+++|.+. +. |. .=-.+||..|...|++ ++|+-... +.+.....+..|+.+|++|+..
T Consensus 102 ~~~Gk~~vIaetgaGnhG~A~A~~aa~~Gl~-c~I~mp~~---d~~rq~~nv~~m~~lGA~Vv~v 162 (397)
T PRK04346 102 KRMGKKRIIAETGAGQHGVATATAAALLGLE-CVIYMGAE---DVERQALNVFRMKLLGAEVVPV 162 (397)
T ss_pred HHcCCCeEEEecCcHHHHHHHHHHHHHcCCc-EEEEecCC---chhhhhhHHHHHHHCCCEEEEE
Confidence 4556665 32 32 2334677888899999 88887753 2222234578899999999763
No 73
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=29.79 E-value=97 Score=22.45 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=22.5
Q ss_pred CccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 14 GGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 14 ~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
..+...+++.++++.+|+++..+|.+
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 46789999999999999999887765
No 74
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=29.70 E-value=41 Score=19.62 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=9.3
Q ss_pred HHCCCcEEEEEcc
Q 045208 30 RQRGILVVWVVRE 42 (176)
Q Consensus 30 r~~~~~Vi~~~~~ 42 (176)
+...+|||||.-.
T Consensus 20 ~~~~~PVVFTS~L 32 (58)
T PF08415_consen 20 RAAVMPVVFTSML 32 (58)
T ss_pred CCCcCCEEEeCCC
Confidence 4456899999643
No 75
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=29.54 E-value=69 Score=24.42 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHHCCCcEEEEEcccCCCC
Q 045208 17 VILPNVIRAVEIARQRGILVVWVVREHNPLG 47 (176)
Q Consensus 17 ~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~ 47 (176)
..+.|..++++.+++.|.|++...+.|.+..
T Consensus 151 ~~~~~~~~~~~~~~~~g~piiisSdAh~~~~ 181 (237)
T PRK00912 151 RTLSNFRDNLALARKYDFPLVLTSGAMSCYD 181 (237)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCcccc
Confidence 3467778899999999999999988887754
No 76
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.54 E-value=84 Score=23.03 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.2
Q ss_pred CccchhHHHHHHHHHHHHCCCcEEEEE
Q 045208 14 GGKVILPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 14 ~~~~ii~~i~~li~~~r~~~~~Vi~~~ 40 (176)
..+.+..++.++++.+++.+.+||...
T Consensus 100 ~~~~~~~~l~~ii~~~~~~~~~vil~t 126 (204)
T cd01830 100 TAEELIAGYRQLIRRAHARGIKVIGAT 126 (204)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEec
Confidence 467899999999999999999888753
No 77
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=29.30 E-value=2.7e+02 Score=21.60 Aligned_cols=82 Identities=12% Similarity=0.187 Sum_probs=56.6
Q ss_pred CCCe-eeecCCCCcc--CCCC----hHHHHHhCCCCe---------eecChhhHHHHHHHHhCCCCcEEEeccccCCCCH
Q 045208 83 EGDY-KLVKTRFSAF--FATH----LHSFLQGAGVDS---------VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATP 146 (176)
Q Consensus 83 ~~d~-v~~K~~~saf--~~t~----l~~~L~~~~i~~---------~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~ 146 (176)
.+|+ -+-|..++.+ ..++ ..++.++.+++- ...+--|..-...+...||+ ++=++|.+-.++-
T Consensus 40 agdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~kvdeyl~e~~~lGfe-~iEIS~G~i~m~~ 118 (258)
T COG1809 40 AGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQDKVDEYLNEAKELGFE-AIEISNGTIPMST 118 (258)
T ss_pred hhhheeeeeecccccccccHHHHHHHHHHHHHcCceecCCceEEEeehhcccHHHHHHHHHHcCcc-EEEecCCeeecch
Confidence 4454 3557655544 2222 455666777765 44555666777888999999 9999999999998
Q ss_pred HHHHHHHHHHHhcCcEeee
Q 045208 147 DVHAANIVDMKNFGIATAT 165 (176)
Q Consensus 147 ~~h~~~l~~l~~~g~~v~~ 165 (176)
+.....++...+.|-.|.+
T Consensus 119 eek~~lIe~a~d~Gf~vls 137 (258)
T COG1809 119 EEKCRLIERAVDEGFMVLS 137 (258)
T ss_pred HHHHHHHHHHHhcccEEeh
Confidence 8878878777776655543
No 78
>PRK11263 cardiolipin synthase 2; Provisional
Probab=29.18 E-value=78 Score=26.61 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEee
Q 045208 121 QTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATA 164 (176)
Q Consensus 121 ~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~ 164 (176)
.....|.++|.+ |-|+-|..++.+. ....++.|...|++|.
T Consensus 52 ~aL~~aa~rGV~-Vril~D~~gs~~~--~~~~~~~L~~aGv~v~ 92 (411)
T PRK11263 52 AALLAAAQRGVK-VEVLVDGYGSPDL--SDEFVNELTAAGVRFR 92 (411)
T ss_pred HHHHHHHHCCCE-EEEEEECCCCCCC--CHHHHHHHHHCCeEEE
Confidence 345678889999 9999998877642 2345677888888875
No 79
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=28.96 E-value=65 Score=17.74 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCcEeeeHHHHHHHh
Q 045208 146 PDVHAANIVDMKNFGIATATLQEWSERV 173 (176)
Q Consensus 146 ~~~h~~~l~~l~~~g~~v~~~~e~~~~l 173 (176)
++.++..|+.|..+....++..+++...
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v 28 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEV 28 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3567888999988766778888887664
No 80
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=28.96 E-value=81 Score=22.92 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=30.8
Q ss_pred ChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEec
Q 045208 100 HLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVV 138 (176)
Q Consensus 100 ~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~ 138 (176)
.+.++|...|+.. ...|=++-+-+..+...|++ |+|++
T Consensus 90 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~-v~IvS 132 (169)
T PF02739_consen 90 YIKELLEALGIPVLEVPGYEADDVIATLAKKASEEGFE-VIIVS 132 (169)
T ss_dssp HHHHHHHHTTSEEEEETTB-HHHHHHHHHHHHHHTTCE-EEEE-
T ss_pred HHHHHHHHCCCCEecCCCCcHHHHHHHHHhhhccCCCE-EEEEc
Confidence 3567788889887 88888999999999999998 99886
No 81
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=28.93 E-value=70 Score=27.39 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=32.9
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHN 44 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~ 44 (176)
|||..-+|.++ .-.+..+.+..+.+...+.|+||..|...
T Consensus 119 nDfTv~ggs~y----~i~~kk~lr~~e~a~~~~~p~iyL~DSgg 158 (536)
T KOG0540|consen 119 NDFTVKGGSYY----PITVKKHLRAQEIADNNRLPCIYLVDSGG 158 (536)
T ss_pred cCchhcccccc----hhhHHHHhhHHHHHhhcCCCceeEecCcc
Confidence 78998888887 55677778888889999999999988644
No 82
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=28.85 E-value=70 Score=22.59 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHCCCcEEEEEc
Q 045208 18 ILPNVIRAVEIARQRGILVVWVVR 41 (176)
Q Consensus 18 ii~~i~~li~~~r~~~~~Vi~~~~ 41 (176)
+..|=..|-+..|+.|+||++.+.
T Consensus 102 VaTnD~eLk~rlr~~GIPvi~lr~ 125 (136)
T COG1412 102 VATNDKELKRRLRENGIPVITLRQ 125 (136)
T ss_pred EEeCCHHHHHHHHHcCCCEEEEeC
Confidence 344556778888999999999973
No 83
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=28.77 E-value=1.1e+02 Score=21.79 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=22.1
Q ss_pred cchhHHHHHHHHHHHHCCCcEEEEE
Q 045208 16 KVILPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 16 ~~ii~~i~~li~~~r~~~~~Vi~~~ 40 (176)
+.+-+.+.+++...+++|.+++++.
T Consensus 26 ~~~~~~~~~a~~~l~~~G~~ivy~T 50 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNGYKILYLT 50 (157)
T ss_pred CcCCHHHHHHHHHHHHcCCeEEEEc
Confidence 5678999999999999999998884
No 84
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=28.72 E-value=74 Score=27.75 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=30.8
Q ss_pred CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccC
Q 045208 1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHN 44 (176)
Q Consensus 1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~ 44 (176)
|||.--+|.|. +.-.+++.++.+.+-+.|.|+|+..+..-
T Consensus 98 ~D~TV~gGt~~----~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG 137 (526)
T COG4799 98 NDFTVKGGTLG----EMTAKKILRAQELAIENGLPVIGLNDSGG 137 (526)
T ss_pred ecCceeccccc----ccccchHHHHHHHHHHcCCCEEEEEcccc
Confidence 46665566665 55677888999999999999999987543
No 85
>PRK10976 putative hydrolase; Provisional
Probab=28.72 E-value=1e+02 Score=23.64 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=28.6
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
|++-+|.|.-.+ ..+-+...+.|..++++|.+++..
T Consensus 6 ~~DlDGTLl~~~-~~is~~~~~ai~~l~~~G~~~~ia 41 (266)
T PRK10976 6 ASDLDGTLLSPD-HTLSPYAKETLKLLTARGIHFVFA 41 (266)
T ss_pred EEeCCCCCcCCC-CcCCHHHHHHHHHHHHCCCEEEEE
Confidence 456688887444 468888999999999999988776
No 86
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.65 E-value=1e+02 Score=20.57 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHCCCcEEEEEc
Q 045208 18 ILPNVIRAVEIARQRGILVVWVVR 41 (176)
Q Consensus 18 ii~~i~~li~~~r~~~~~Vi~~~~ 41 (176)
--+.+.++++.+|++|.+||.+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeC
Confidence 347788889999999999998854
No 87
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=28.63 E-value=2.3e+02 Score=21.00 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeH
Q 045208 118 CIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 118 CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
-+..++..+...+.. ++++- ..-+....|+..+..|+++|+.|+..
T Consensus 103 Llt~~a~~~L~~~~p-vii~P--~~M~~~p~~~~Nl~~L~~~G~~vi~P 148 (185)
T PRK06029 103 LITRAADVMLKERRR-LVLCV--RETPLHLGHLRNMTKLAEMGAIIMPP 148 (185)
T ss_pred HHHHHHHHHHhcCCC-EEEEe--ccccCCHHHHHHHHHHHHCcCEEECC
Confidence 344444455566776 77766 34556678899999999999988764
No 88
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=28.36 E-value=39 Score=28.62 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=53.2
Q ss_pred chhHHHHHHHH----HHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCCCCCCCeeeecCC
Q 045208 17 VILPNVIRAVE----IARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKTR 92 (176)
Q Consensus 17 ~ii~~i~~li~----~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~d~v~~K~~ 92 (176)
.+++|+..+|+ .+.++|..|.|..+.-+ ..+++.++.-..+-..|.|..
T Consensus 58 ~~lenLd~~l~~~~~~v~~~Gg~vy~A~~aed---------------------------A~~ii~~iv~~k~~k~vVKsK 110 (459)
T COG1139 58 HVLENLDEYLEQLEENVTRNGGHVYFAKDAED---------------------------AREIIGEIVGEKNGKKVVKSK 110 (459)
T ss_pred HHHHhHHHHHHHHHHHHHHcCCEEEEeCCHHH---------------------------HHHHHHHHHhhccCcEEEEec
Confidence 34555554444 45667888888854211 123344443322222344444
Q ss_pred CCccCCCChHHHHHhCCCCeeecChhhHHHHHHHHhCCCCcEEEecccc
Q 045208 93 FSAFFATHLHSFLQGAGVDSVQTPNCIRQTAFDAIALDYQPVTVVVDAT 141 (176)
Q Consensus 93 ~saf~~t~l~~~L~~~~i~~~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~ 141 (176)
-..-...+|.++|++.|++.+.||..=+---+ ..+-. ..+|.-|.
T Consensus 111 SmvseEIgln~~Le~~G~ev~ETDLGE~IlQl---~~~~P-sHIV~PAl 155 (459)
T COG1139 111 SMVSEEIGLNHYLEEKGIEVWETDLGELILQL---AGEPP-SHIVAPAL 155 (459)
T ss_pred chhHHHhhhHHHHHHcCCeEEEccHHHHHHHh---cCCCC-cceecccc
Confidence 34446789999999999999888865442211 23443 66666554
No 89
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=28.02 E-value=1.1e+02 Score=24.73 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=28.5
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~ 40 (176)
|++-+|.|.-. -..+-+...+.|+..+++|++||...
T Consensus 5 ftDLDGTLLd~-~~~~~~~a~~aL~~Lk~~GI~vVlaT 41 (302)
T PRK12702 5 LSSLDGSLLDL-EFNSYGAARQALAALERRSIPLVLYS 41 (302)
T ss_pred EEeCCCCCcCC-CCcCCHHHHHHHHHHHHCCCEEEEEc
Confidence 56778888632 33466778899999999999998874
No 90
>PRK15492 triosephosphate isomerase; Provisional
Probab=27.97 E-value=1.7e+02 Score=22.98 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=41.1
Q ss_pred CCCCccCCCChHHHHHhCCCCe------------eecChhhHHHHHHHHhCCCCcEEEeccc
Q 045208 91 TRFSAFFATHLHSFLQGAGVDS------------VQTPNCIRQTAFDAIALDYQPVTVVVDA 140 (176)
Q Consensus 91 ~~~saf~~t~l~~~L~~~~i~~------------~~t~~CV~~Ta~~a~~~g~~~v~vv~Da 140 (176)
...++|.+.--...|++.|++. -.||.-|-.-+..|.+.|.. ++|.-+=
T Consensus 76 ~~~Ga~TGevSa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~-pIvCiGE 136 (260)
T PRK15492 76 NDNGQFTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFT-TLLCVGE 136 (260)
T ss_pred CCCCCccCcCCHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCE-EEEEcCC
Confidence 4567999988999999999854 77888899999999999999 7776553
No 91
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=27.96 E-value=97 Score=22.08 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=21.9
Q ss_pred ccchhHHHHHHHHHHHH--CCCcEEEEE
Q 045208 15 GKVILPNVIRAVEIARQ--RGILVVWVV 40 (176)
Q Consensus 15 ~~~ii~~i~~li~~~r~--~~~~Vi~~~ 40 (176)
.+.+.+++.++++.+++ .+.+||++.
T Consensus 87 ~~~~~~~~~~~i~~~~~~~~~~~ii~~t 114 (199)
T cd01838 87 LDEYKENLRKIVSHLKSLSPKTKVILIT 114 (199)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEeC
Confidence 56788999999999998 678888873
No 92
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=27.78 E-value=1.1e+02 Score=22.74 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=27.5
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
|++-+|.|.-.+ ..+-+...+.|..+++.|.+++.+
T Consensus 7 ~~DlDGTLl~~~-~~i~~~~~~al~~l~~~G~~~~ia 42 (230)
T PRK01158 7 AIDIDGTITDKD-RRLSLKAVEAIRKAEKLGIPVILA 42 (230)
T ss_pred EEecCCCcCCCC-CccCHHHHHHHHHHHHCCCEEEEE
Confidence 456678886433 347788889999999999998877
No 93
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=27.70 E-value=3.1e+02 Score=23.58 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=40.7
Q ss_pred CChHHHHHhCCCCeeecChhhHHHHHHHHhCCCC-------------cEEEeccccCCCCHHHHHHHHHHHHhcCcEeee
Q 045208 99 THLHSFLQGAGVDSVQTPNCIRQTAFDAIALDYQ-------------PVTVVVDATAAATPDVHAANIVDMKNFGIATAT 165 (176)
Q Consensus 99 t~l~~~L~~~~i~~~~t~~CV~~Ta~~a~~~g~~-------------~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~ 165 (176)
..|+++|+++|.+.-=+|.+...+...+...|.. +++|++.|...-+++. ......|..+++
T Consensus 21 sglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~Ai~~~NpEi-----~~A~e~~ipi~~ 95 (459)
T COG0773 21 SGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSNAIKEDNPEI-----VAALERGIPVIS 95 (459)
T ss_pred HHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEecccCCCCHHH-----HHHHHcCCCeEc
Confidence 4577777777777633344444444444444333 2677777777666665 233455666777
Q ss_pred HHHHHHHh
Q 045208 166 LQEWSERV 173 (176)
Q Consensus 166 ~~e~~~~l 173 (176)
-.|+|.+|
T Consensus 96 r~e~Lael 103 (459)
T COG0773 96 RAEMLAEL 103 (459)
T ss_pred HHHHHHHH
Confidence 77766664
No 94
>PRK14567 triosephosphate isomerase; Provisional
Probab=27.66 E-value=1.6e+02 Score=23.10 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=40.6
Q ss_pred CCCCccCCCChHHHHHhCCCCe------------eecChhhHHHHHHHHhCCCCcEEEecc
Q 045208 91 TRFSAFFATHLHSFLQGAGVDS------------VQTPNCIRQTAFDAIALDYQPVTVVVD 139 (176)
Q Consensus 91 ~~~saf~~t~l~~~L~~~~i~~------------~~t~~CV~~Ta~~a~~~g~~~v~vv~D 139 (176)
...++|.+.--...|++.|++- -.||..|..-+..|++.|.. +++.-+
T Consensus 67 ~~~Ga~TGEvS~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~-pI~CiG 126 (253)
T PRK14567 67 YDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTIT-PVVCIG 126 (253)
T ss_pred ccCCCccCcCCHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCE-EEEEcC
Confidence 4457999988999999999864 78888999999999999999 777554
No 95
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=27.34 E-value=65 Score=19.68 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCC-cE-EEEEcccCCC
Q 045208 20 PNVIRAVEIARQRGI-LV-VWVVREHNPL 46 (176)
Q Consensus 20 ~~i~~li~~~r~~~~-~V-i~~~~~~~~~ 46 (176)
+++.+--+..|+.|+ || ||+.+...|+
T Consensus 3 ~RV~khR~~lRa~GLRPVqiWVPDtr~p~ 31 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQIWVPDTRRPE 31 (65)
T ss_pred HHHHHHHHHHHHcCCCcceeeCCCCCChH
Confidence 566777778888998 54 8997765554
No 96
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=26.91 E-value=3e+02 Score=21.86 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=35.9
Q ss_pred hHHHHHhCCCCe----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeH
Q 045208 101 LHSFLQGAGVDS----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 101 l~~~L~~~~i~~----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
+...+.++|.++ ...|.++ +.|..+...|++ ++++.+-..+ ..-++.|+.+|++|+.+
T Consensus 61 ~l~~a~~~g~~~vv~~SsGN~g~-alA~~a~~~G~~-~~ivvp~~~~------~~k~~~l~~~GA~Vi~~ 122 (324)
T cd01563 61 AVSKAKELGVKAVACASTGNTSA-SLAAYAARAGIK-CVVFLPAGKA------LGKLAQALAYGATVLAV 122 (324)
T ss_pred HHHHHHHcCCCEEEEeCCCHHHH-HHHHHHHHcCCc-eEEEEeCCCC------HHHHHHHHHcCCEEEEE
Confidence 333344556555 2333333 466778888998 8888776542 23466777888888754
No 97
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=26.82 E-value=1.7e+02 Score=23.04 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCCcEEEecc--ccCC
Q 045208 120 RQTAFDAIALDYQPVTVVVD--ATAA 143 (176)
Q Consensus 120 ~~Ta~~a~~~g~~~v~vv~D--a~~~ 143 (176)
.+|..-....|++ ++++.+ ||+.
T Consensus 19 ~a~~~vL~~lGi~-v~~~~~q~CCG~ 43 (290)
T TIGR03288 19 KATRLTMEKLGIE-LLDMPGASCCPA 43 (290)
T ss_pred HHHHHHHHHcCCe-EEeCCCCCCCCc
Confidence 3556666677998 888865 6553
No 98
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.37 E-value=1.1e+02 Score=18.49 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHCCCcEEEEE
Q 045208 19 LPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 19 i~~i~~li~~~r~~~~~Vi~~~ 40 (176)
-+.+.++++.+|++|.++|.+.
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 3667888899999999988764
No 99
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=26.30 E-value=62 Score=17.87 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=13.9
Q ss_pred cchhHHHHHHHHHHHHCC
Q 045208 16 KVILPNVIRAVEIARQRG 33 (176)
Q Consensus 16 ~~ii~~i~~li~~~r~~~ 33 (176)
+.++++|.+|+..+...+
T Consensus 1 ekil~kI~kLLalA~~~~ 18 (43)
T PF10979_consen 1 EKILEKIRKLLALAESTG 18 (43)
T ss_pred ChHHHHHHHHHHHhhCCC
Confidence 467889999999887643
No 100
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=26.20 E-value=1.1e+02 Score=23.51 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=28.4
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
|++-+|.|...+ ..+-+...+.|..+++.|+.++.+
T Consensus 6 ~~DlDGTLl~~~-~~i~~~~~~ai~~l~~~G~~~~ia 41 (272)
T PRK15126 6 AFDMDGTLLMPD-HHLGEKTLSTLARLRERDITLTFA 41 (272)
T ss_pred EEeCCCcCcCCC-CcCCHHHHHHHHHHHHCCCEEEEE
Confidence 456688887443 358888899999999999988777
No 101
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=25.71 E-value=2.8e+02 Score=21.14 Aligned_cols=101 Identities=14% Similarity=0.016 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCC-CCCcccccCCCCCCCCeeeecCCCCccCC
Q 045208 20 PNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKG-SRGAELVDGLVIREGDYKLVKTRFSAFFA 98 (176)
Q Consensus 20 ~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~l~~~~~d~v~~K~~~saf~~ 98 (176)
-++.+-++..++.|...+|+-. - | |+++++ +.|.+++.+|+....+..++=+-+ .-..
T Consensus 19 ~~l~~~~~~l~~~~~~~~H~Di-m--D-----------------g~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm-~~~p 77 (228)
T PTZ00170 19 SKLADEAQDVLSGGADWLHVDV-M--D-----------------GHFVPNLSFGPPVVKSLRKHLPNTFLDCHLM-VSNP 77 (228)
T ss_pred HHHHHHHHHHHHcCCCEEEEec-c--c-----------------CccCCCcCcCHHHHHHHHhcCCCCCEEEEEC-CCCH
Confidence 4677888888889999999832 1 1 335655 667777877765432333332222 1111
Q ss_pred CChHHHHHhCCCCe--eecChh---hHHHHHHHHhCCCCcEEEeccccC
Q 045208 99 THLHSFLQGAGVDS--VQTPNC---IRQTAFDAIALDYQPVTVVVDATA 142 (176)
Q Consensus 99 t~l~~~L~~~~i~~--~~t~~C---V~~Ta~~a~~~g~~~v~vv~Da~~ 142 (176)
-...+.+.+.|.+. +-.+.+ +..+...+.++|.. +-|.-....
T Consensus 78 ~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~-~gval~p~t 125 (228)
T PTZ00170 78 EKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMK-VGVAIKPKT 125 (228)
T ss_pred HHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCe-EEEEECCCC
Confidence 22345566778887 333333 44555666677887 766555433
No 102
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=25.44 E-value=2.2e+02 Score=20.99 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=58.8
Q ss_pred CCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCCCCCCCeeeecCC
Q 045208 13 DGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKTR 92 (176)
Q Consensus 13 ~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~d~v~~K~~ 92 (176)
.+....-+.+.+.+...+.+|+.++.+.. .... + +. .+.+.| .-+++..-..
T Consensus 42 wd~~~~tpe~~~W~~e~k~~gi~v~vvSN--n~e~------R------------V~-----~~~~~l---~v~fi~~A~K 93 (175)
T COG2179 42 WDNPDATPELRAWLAELKEAGIKVVVVSN--NKES------R------------VA-----RAAEKL---GVPFIYRAKK 93 (175)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCEEEEEeC--CCHH------H------------HH-----hhhhhc---CCceeecccC
Confidence 45566778888899999999987666532 1000 0 00 001111 1122222111
Q ss_pred CCccCCCChHHHHHhCCCCe---eecChhhHHHHHHHHhCCCCcEEEeccccCCCC
Q 045208 93 FSAFFATHLHSFLQGAGVDS---VQTPNCIRQTAFDAIALDYQPVTVVVDATAAAT 145 (176)
Q Consensus 93 ~saf~~t~l~~~L~~~~i~~---~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~ 145 (176)
+ .+-.|...|++.+++. ++--=-..+=++.+..+|+. +|+|+--..+-.
T Consensus 94 --P-~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~-tIlV~Pl~~~d~ 145 (175)
T COG2179 94 --P-FGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMR-TILVEPLVAPDG 145 (175)
T ss_pred --c-cHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcE-EEEEEEeccccc
Confidence 1 1346788899988886 22122344448999999999 999988776544
No 103
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=25.44 E-value=1.2e+02 Score=23.22 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=28.0
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
|++-+|.|.-. -..+-+...+.|+.++++|+.|+..
T Consensus 7 ~~DlDGTLl~~-~~~i~~~~~~ai~~l~~~G~~~~ia 42 (270)
T PRK10513 7 AIDMDGTLLLP-DHTISPAVKQAIAAARAKGVNVVLT 42 (270)
T ss_pred EEecCCcCcCC-CCccCHHHHHHHHHHHHCCCEEEEe
Confidence 45668888643 3457788899999999999988777
No 104
>PRK12452 cardiolipin synthetase; Reviewed
Probab=25.38 E-value=95 Score=26.90 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=29.5
Q ss_pred HHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEee
Q 045208 122 TAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATA 164 (176)
Q Consensus 122 Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~ 164 (176)
....+.++|.+ |-++-|..++.. .....++.|...|+++.
T Consensus 185 aL~~aa~rGV~-VRiL~D~~Gs~~--~~~~~~~~L~~aGi~v~ 224 (509)
T PRK12452 185 ALIKKAKDGVI-VRFLYDGLGSNT--LRRRFLQPMKEAGIEIV 224 (509)
T ss_pred HHHHHHHCCCE-EEEEEECCCCCC--CCHHHHHHHHhCCeEEE
Confidence 34456789999 999999998863 12345677888888875
No 105
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.23 E-value=75 Score=26.91 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=22.9
Q ss_pred cCCccchhHHHHHHHHHHHHCCCcEEE
Q 045208 12 MDGGKVILPNVIRAVEIARQRGILVVW 38 (176)
Q Consensus 12 ~~~~~~ii~~i~~li~~~r~~~~~Vi~ 38 (176)
+..+..++.++..+|+.||++|.||+.
T Consensus 150 SDY~KG~L~~~q~~I~~ar~~~~pVLv 176 (467)
T COG2870 150 SDYAKGVLTNVQKMIDLAREAGIPVLV 176 (467)
T ss_pred eccccccchhHHHHHHHHHHcCCcEEE
Confidence 345667888899999999999999876
No 106
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.22 E-value=3.1e+02 Score=20.84 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=17.5
Q ss_pred ccchhHHHHHHHHHHHHCCCcEEEEE
Q 045208 15 GKVILPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 15 ~~~ii~~i~~li~~~r~~~~~Vi~~~ 40 (176)
..--.+...++++..-+.|+++|=+-
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg 39 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVG 39 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 33355666677777777898877663
No 107
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=25.16 E-value=1.9e+02 Score=23.57 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=81.6
Q ss_pred ccCCCCcccc-CCccch-hHHHHHHHHHHHHCCCc-EEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCC
Q 045208 3 FIADDGLVKM-DGGKVI-LPNVIRAVEIARQRGIL-VVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGL 79 (176)
Q Consensus 3 F~~~~g~l~~-~~~~~i-i~~i~~li~~~r~~~~~-Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 79 (176)
||.|.|.... ++.+-+ .+.|.++++.+.+.|+. |=.| ...| .++ ..-.+|+..+
T Consensus 27 YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlT--GGEP--------------------llR-~dl~eIi~~l 83 (322)
T COG2896 27 YCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLT--GGEP--------------------LLR-KDLDEIIARL 83 (322)
T ss_pred ccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEe--CCCc--------------------hhh-cCHHHHHHHH
Confidence 8889884433 333344 79999999999988875 4454 1111 111 0111334344
Q ss_pred CCC-CCCeeeecCCCCccCCCChHHHHHhCCCCe--------------eecC----hhhHHHHHHHHhCCCCcEEEeccc
Q 045208 80 VIR-EGDYKLVKTRFSAFFATHLHSFLQGAGVDS--------------VQTP----NCIRQTAFDAIALDYQPVTVVVDA 140 (176)
Q Consensus 80 ~~~-~~d~v~~K~~~saf~~t~l~~~L~~~~i~~--------------~~t~----~CV~~Ta~~a~~~g~~~v~vv~Da 140 (176)
+.. ..|.-+.- |.+.=+..+.-|++.|.+. -.|. .=|+.-...|.+.|+.||.|-...
T Consensus 84 ~~~~~~~islTT---NG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv 160 (322)
T COG2896 84 ARLGIRDLSLTT---NGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVL 160 (322)
T ss_pred hhcccceEEEec---chhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 332 12222222 3444456788888888887 1121 234455668889999769999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCc
Q 045208 141 TAAATPDVHAANIVDMKNFGI 161 (176)
Q Consensus 141 ~~~~~~~~h~~~l~~l~~~g~ 161 (176)
+-++|...-...++.....|+
T Consensus 161 ~kgvNd~ei~~l~e~~~~~~~ 181 (322)
T COG2896 161 MKGVNDDEIEDLLEFAKERGA 181 (322)
T ss_pred ecCCCHHHHHHHHHHHhhcCC
Confidence 999998877777777766654
No 108
>PRK08329 threonine synthase; Validated
Probab=25.16 E-value=3.3e+02 Score=22.13 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=38.0
Q ss_pred hHHHHHhCCCCe---eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeH
Q 045208 101 LHSFLQGAGVDS---VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 101 l~~~L~~~~i~~---~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
+...+++.|.++ .++-.--.+.|..|...|++ ++|+...-. + ..-+..|+.+|++|+..
T Consensus 95 ~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~-~~v~vp~~~--~----~~k~~~~~~~GA~v~~v 156 (347)
T PRK08329 95 TVAKLKEEGINEVVIDSSGNAALSLALYSLSEGIK-VHVFVSYNA--S----KEKISLLSRLGAELHFV 156 (347)
T ss_pred HHHHHHHcCCCEEEEECCCcHHHHHHHHHHHcCCc-EEEEECCCC--h----HHHHHHHHHcCCEEEEE
Confidence 344566678877 33334445666677789998 888765422 1 44567778889888754
No 109
>PF00239 Resolvase: Resolvase, N terminal domain; InterPro: IPR006119 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA, and a C-terminal helix-turn-helix DNA-binding domain IPR006120 from INTERPRO. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 3PLO_X 3BVP_B 2RSL_C 1ZR2_A 2GM4_B 2GM5_D 1ZR4_A 1GDT_B 1HX7_A 1GHT_A ....
Probab=25.04 E-value=1.6e+02 Score=19.86 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=4.7
Q ss_pred CChHHHHHh
Q 045208 99 THLHSFLQG 107 (176)
Q Consensus 99 t~l~~~L~~ 107 (176)
++|.+.|+.
T Consensus 48 ~~~~~ll~~ 56 (141)
T PF00239_consen 48 PGFQELLED 56 (141)
T ss_dssp HHHHHHHHH
T ss_pred cceeeeccc
Confidence 455555543
No 110
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=25.00 E-value=1.1e+02 Score=23.57 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=45.2
Q ss_pred CeeeecCCC-CccCC--------CChHHHHHhCCCCe--------eecChhhHHHH--------HHHHhCCCCcEEEecc
Q 045208 85 DYKLVKTRF-SAFFA--------THLHSFLQGAGVDS--------VQTPNCIRQTA--------FDAIALDYQPVTVVVD 139 (176)
Q Consensus 85 d~v~~K~~~-saf~~--------t~l~~~L~~~~i~~--------~~t~~CV~~Ta--------~~a~~~g~~~v~vv~D 139 (176)
|.++.+++| +.|-. ..+.++|+++|++. ++.+..+--.| ....+.||+ |.+..-
T Consensus 159 d~~~~~~~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G~~-v~~~l~ 237 (265)
T COG4822 159 DHVLDEYGFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNGFK-VEVYLH 237 (265)
T ss_pred HHHHHhcCCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccchHHHHHHHHhCCce-eEEEee
Confidence 445666666 44432 34778889999987 56665554433 344577998 988888
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 045208 140 ATAAATPDVHAANIVDMKN 158 (176)
Q Consensus 140 a~~~~~~~~h~~~l~~l~~ 158 (176)
+.+-.+ ......++.++.
T Consensus 238 GLGE~~-~iq~ifi~Hik~ 255 (265)
T COG4822 238 GLGENP-AIQAIFIDHIKD 255 (265)
T ss_pred cCCCcH-HHHHHHHHHHHH
Confidence 877664 333555555543
No 111
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=24.92 E-value=1.2e+02 Score=23.17 Aligned_cols=36 Identities=33% Similarity=0.439 Sum_probs=28.2
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
|++-+|.|.-.+ ..+-+...+.|..+++.|..|+..
T Consensus 7 ~~DlDGTLl~~~-~~i~~~~~~ai~~~~~~G~~~~ia 42 (272)
T PRK10530 7 ALDLDGTLLTPK-KTILPESLEALARAREAGYKVIIV 42 (272)
T ss_pred EEeCCCceECCC-CccCHHHHHHHHHHHHCCCEEEEE
Confidence 456688886433 468888899999999999987776
No 112
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=24.81 E-value=1.3e+02 Score=23.32 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=28.0
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
|++-+|.|.-.+ ..+.+...++|+.+++.|++++.+
T Consensus 8 ~~DlDGTLl~~~-~~~~~~~~~ai~~l~~~Gi~~~ia 43 (273)
T PRK00192 8 FTDLDGTLLDHH-TYSYEPAKPALKALKEKGIPVIPC 43 (273)
T ss_pred EEcCcccCcCCC-CcCcHHHHHHHHHHHHCCCEEEEE
Confidence 556688886433 467788999999999999987776
No 113
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=24.76 E-value=78 Score=20.19 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHCCCcEEEE
Q 045208 20 PNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 20 ~~i~~li~~~r~~~~~Vi~~ 39 (176)
.-..++++.|+++|+||+--
T Consensus 27 ~~A~~I~~~A~e~~VPi~~~ 46 (82)
T TIGR00789 27 EVAERIIEIAKKHGIPIVED 46 (82)
T ss_pred HHHHHHHHHHHHcCCCEEeC
Confidence 34556777888999999854
No 114
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=24.72 E-value=71 Score=25.81 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=21.9
Q ss_pred cchhHHHHHHHHHHHHCCCcEEEEEcccCCCC
Q 045208 16 KVILPNVIRAVEIARQRGILVVWVVREHNPLG 47 (176)
Q Consensus 16 ~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~ 47 (176)
..-+++|+..++..+..|+||||=. .|+..+
T Consensus 133 ~~~ld~iA~~l~~l~~~~vPVl~Rp-~HE~nG 163 (311)
T PF02156_consen 133 KADLDRIADFLKQLKDAGVPVLFRP-FHEMNG 163 (311)
T ss_dssp HHHHHHHHHHHHHHHCTTS-EEEEE-STSTTS
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEee-hhhcCC
Confidence 3456788888888888999999854 455444
No 115
>PRK03705 glycogen debranching enzyme; Provisional
Probab=24.56 E-value=1.2e+02 Score=27.37 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=24.7
Q ss_pred CccCCCCccccCCccchhHHHHHHHHHHHHCCCcEE
Q 045208 2 DFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVV 37 (176)
Q Consensus 2 dF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi 37 (176)
+|..|++.+..... .-+...++|+++++++|+.||
T Consensus 225 ~yfa~d~~ygt~~~-~~~~efk~LV~~~H~~GI~VI 259 (658)
T PRK03705 225 AMFALDPAYASGPE-TALDEFRDAVKALHKAGIEVI 259 (658)
T ss_pred cccccccccCCCCc-chHHHHHHHHHHHHHCCCEEE
Confidence 45555555543222 457789999999999999877
No 116
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=24.47 E-value=2.3e+02 Score=25.52 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=51.1
Q ss_pred CChHHHHHhCCCCe----eecChhhHHHHHHHHhCC-CCcEEEeccccC-CCCHHHHHHHHHHHHhcCcEeeeHHHHHHH
Q 045208 99 THLHSFLQGAGVDS----VQTPNCIRQTAFDAIALD-YQPVTVVVDATA-AATPDVHAANIVDMKNFGIATATLQEWSER 172 (176)
Q Consensus 99 t~l~~~L~~~~i~~----~~t~~CV~~Ta~~a~~~g-~~~v~vv~Da~~-~~~~~~h~~~l~~l~~~g~~v~~~~e~~~~ 172 (176)
-.|+.+|..+|++. .-.++--...+-.+|..+ .. ++|-+-|.+ ++|.-..+..++. ..||.+.++..|+.++
T Consensus 454 h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~-~VVTTAAL~AGVDFPASQVIFEs-LaMG~~WLs~~EF~QM 531 (830)
T COG1202 454 HELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA-AVVTTAALAAGVDFPASQVIFES-LAMGIEWLSVREFQQM 531 (830)
T ss_pred HHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc-eEeehhhhhcCCCCchHHHHHHH-HHcccccCCHHHHHHH
Confidence 34888898888887 444455556666666664 55 777766654 4554443433333 3589999999999999
Q ss_pred hhcC
Q 045208 173 VADA 176 (176)
Q Consensus 173 l~~~ 176 (176)
|+-|
T Consensus 532 ~GRA 535 (830)
T COG1202 532 LGRA 535 (830)
T ss_pred hccc
Confidence 8754
No 117
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=24.32 E-value=3.9e+02 Score=21.73 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHhCCCCe--eecCh----hhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeee
Q 045208 103 SFLQGAGVDS--VQTPN----CIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATAT 165 (176)
Q Consensus 103 ~~L~~~~i~~--~~t~~----CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~ 165 (176)
+...+.|++. +.+++ -+...+..+.++|++ |.+.--.+...+++.-....+.+..+|+..+.
T Consensus 94 ~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~-v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~ 161 (333)
T TIGR03217 94 KAAYDAGARTVRVATHCTEADVSEQHIGMARELGMD-TVGFLMMSHMTPPEKLAEQAKLMESYGADCVY 161 (333)
T ss_pred HHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCe-EEEEEEcccCCCHHHHHHHHHHHHhcCCCEEE
No 118
>PRK00549 competence damage-inducible protein A; Provisional
Probab=24.24 E-value=3.5e+02 Score=22.77 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=34.3
Q ss_pred CChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHH
Q 045208 99 THLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIV 154 (176)
Q Consensus 99 t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~ 154 (176)
.-|...|++.|++. +.-+.-....++.....+++ ++|++-.++.-..+.-..++.
T Consensus 23 ~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~D-lVItTGGlGpt~dD~t~ea~a 82 (414)
T PRK00549 23 QFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSD-LIITTGGLGPTKDDLTKETVA 82 (414)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCC-EEEECCCCCCCCCccHHHHHH
Confidence 45788899999876 33333333444444456888 999998777655443333333
No 119
>PRK10736 hypothetical protein; Provisional
Probab=24.23 E-value=2.7e+02 Score=23.19 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeee-HHHHHHHhh
Q 045208 117 NCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATAT-LQEWSERVA 174 (176)
Q Consensus 117 ~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~-~~e~~~~l~ 174 (176)
..-+.||..|.+.|-+ |..+.....+...+. -..|.+-|+.+++ .+++++.|.
T Consensus 231 SGsliTA~~Al~~gR~-VfavPG~i~~~~s~G----~n~LI~~GA~lv~~~~Di~~~l~ 284 (374)
T PRK10736 231 SGSLVTARCALEQGRD-VFALPGPIGNPGSEG----PHWLIKQGAYLVTSPEDILENLQ 284 (374)
T ss_pred CchHHHHHHHHHhCCe-EEEEcCCCCCccchh----HHHHHHCCCEEeCCHHHHHHHhh
Confidence 3457899999999999 999976555443222 1223334676544 677887773
No 120
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.66 E-value=3.4e+02 Score=20.81 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=25.7
Q ss_pred CccCCCChHHHHHhCCCCe------------eecChhhHHHHHHHHhCCCCcEEEe
Q 045208 94 SAFFATHLHSFLQGAGVDS------------VQTPNCIRQTAFDAIALDYQPVTVV 137 (176)
Q Consensus 94 saf~~t~l~~~L~~~~i~~------------~~t~~CV~~Ta~~a~~~g~~~v~vv 137 (176)
++|.+..=.+.|+..|.+- -.++--|-.-+..|+..|.. |+..
T Consensus 71 GafTGEiS~~mlkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~-ViaC 125 (247)
T KOG1643|consen 71 GAFTGEISAEMLKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLK-VIAC 125 (247)
T ss_pred ccccCccCHHHHHhCCCCEEEecchhhhhhhCCchHHHHHHHHHHHHcCCe-EEEE
Confidence 3666666666666666553 34455555556666777776 6653
No 121
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=23.63 E-value=64 Score=24.68 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=24.5
Q ss_pred CccchhHHHHHHHHHHHHCCCcEEEEEcc
Q 045208 14 GGKVILPNVIRAVEIARQRGILVVWVVRE 42 (176)
Q Consensus 14 ~~~~ii~~i~~li~~~r~~~~~Vi~~~~~ 42 (176)
+....++.+.+|++.++++|+.|+|+...
T Consensus 112 ~~~~aip~a~~l~~~~~~~G~~V~~iT~R 140 (229)
T PF03767_consen 112 GKAPAIPGALELYNYARSRGVKVFFITGR 140 (229)
T ss_dssp TGGEEETTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCcccHHHHHHHHHHHHCCCeEEEEecC
Confidence 44577888999999999999999999653
No 122
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=23.58 E-value=2.5e+02 Score=19.65 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=29.0
Q ss_pred ChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhc
Q 045208 116 PNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNF 159 (176)
Q Consensus 116 ~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~ 159 (176)
...+......|.++|.+ |.|+.|.........-...+..|...
T Consensus 52 ~~~l~~~L~~a~~rGv~-V~il~~~~~~~~~~~~~~~~~~l~~~ 94 (176)
T cd00138 52 GPVILDALLAAARRGVK-VRILVDEWSNTDLKISSAYLDSLRAL 94 (176)
T ss_pred chHHHHHHHHHHHCCCE-EEEEEcccccCCchHHHHHHHHHHHh
Confidence 44666777888999999 99999877766532333445555543
No 123
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=23.41 E-value=1.6e+02 Score=21.05 Aligned_cols=108 Identities=11% Similarity=0.065 Sum_probs=59.1
Q ss_pred CCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCCCCCC
Q 045208 5 ADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREG 84 (176)
Q Consensus 5 ~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~ 84 (176)
+-+|.+.......+.+.+.++++..++.|.+++.+... +.......+.++ + +.... ..
T Consensus 31 D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~--~~~~~~~~~~~~---------~-----gl~~~------~~ 88 (170)
T TIGR01668 31 DKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNN--AGEQRAKAVEKA---------L-----GIPVL------PH 88 (170)
T ss_pred ecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCC--chHHHHHHHHHH---------c-----CCEEE------cC
Confidence 34566665566678899999999999999986555321 100000001000 0 00000 00
Q ss_pred CeeeecCCCCccCCCChHHHHHhCCCCe----eecChhhHHHHHHHHhCCCCcEEEeccccCCC
Q 045208 85 DYKLVKTRFSAFFATHLHSFLQGAGVDS----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAA 144 (176)
Q Consensus 85 d~v~~K~~~saf~~t~l~~~L~~~~i~~----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~ 144 (176)
..|+. ..-+...+++.+++. +..| -..+=+..|...|++ ++.+.....+.
T Consensus 89 ---~~KP~-----p~~~~~~l~~~~~~~~~~l~IGD-s~~~Di~aA~~aGi~-~i~v~~g~~~~ 142 (170)
T TIGR01668 89 ---AVKPP-----GCAFRRAHPEMGLTSEQVAVVGD-RLFTDVMGGNRNGSY-TILVEPLVHPD 142 (170)
T ss_pred ---CCCCC-----hHHHHHHHHHcCCCHHHEEEECC-cchHHHHHHHHcCCe-EEEEccCcCCc
Confidence 01332 223566777777764 2222 112237888999999 99997766554
No 124
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=23.41 E-value=91 Score=20.30 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=14.1
Q ss_pred HHHHHHHH-HCCCcEEEEE
Q 045208 23 IRAVEIAR-QRGILVVWVV 40 (176)
Q Consensus 23 ~~li~~~r-~~~~~Vi~~~ 40 (176)
..|.+..| ..|+||||.+
T Consensus 74 ~~Lr~~lr~~~GvPvi~l~ 92 (101)
T PF04900_consen 74 KELRRRLRKIPGVPVIYLR 92 (101)
T ss_pred HHHHHHHhcCCCCCEEEEE
Confidence 45666777 7899999997
No 125
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.03 E-value=1.2e+02 Score=22.61 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHCCCcEEEEE
Q 045208 18 ILPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 18 ii~~i~~li~~~r~~~~~Vi~~~ 40 (176)
--+++.++++.+|++|.+||.+.
T Consensus 121 ~s~~v~~a~~~Ak~~G~~vI~IT 143 (196)
T PRK10886 121 NSRDIVKAVEAAVTRDMTIVALT 143 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999999884
No 126
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.54 E-value=2.7e+02 Score=21.63 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=21.3
Q ss_pred HHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEe
Q 045208 122 TAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIAT 163 (176)
Q Consensus 122 Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v 163 (176)
.||.+..+||+ |.|+. ...........++..+...|..+
T Consensus 79 ~AR~L~~~G~~-V~v~~--~~~~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 79 AARHLAHFGYE-VTVCY--PKQSSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred HHHHHHHCCCe-EEEEE--cCCCChHHHHHHHHHHHHcCCCE
Confidence 46777778887 87776 11122222244555555555443
No 127
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=22.48 E-value=1.6e+02 Score=21.72 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=28.1
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~ 40 (176)
|++-+|.|.- .-..+-+...+.|...++.|.+|+.+.
T Consensus 5 ~~DlDGTLl~-~~~~i~~~~~~~i~~l~~~g~~~~~~T 41 (215)
T TIGR01487 5 AIDIDGTLTE-PNRMISERAIEAIRKAEKKGIPVSLVT 41 (215)
T ss_pred EEecCCCcCC-CCcccCHHHHHHHHHHHHCCCEEEEEc
Confidence 4566788863 333577888999999999999987763
No 128
>PLN02618 tryptophan synthase, beta chain
Probab=22.44 E-value=2.1e+02 Score=24.19 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=37.0
Q ss_pred HhCCCCe-e-ec--ChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeH
Q 045208 106 QGAGVDS-V-QT--PNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 106 ~~~~i~~-~-~t--~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
++.|.+. + .| -.=-.++|..|...|++ ++|+.... +.+.....+..|+.+|++|+..
T Consensus 115 ~~~g~~~vIaesgaGNhG~AlA~aaa~~Gl~-~~I~m~~~---~~~~~~~nv~~mr~lGA~Vi~v 175 (410)
T PLN02618 115 KRLGKKRIIAETGAGQHGVATATVCARFGLE-CIVYMGAQ---DMERQALNVFRMRLLGAEVRPV 175 (410)
T ss_pred HHcCCCEEEEEcCcHHHHHHHHHHHHHcCCc-EEEEEcCC---chhhhhhhHHHHHHCCCEEEEE
Confidence 3456555 2 32 22334667788899999 99987763 2333345567899999999765
No 129
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=22.43 E-value=1.5e+02 Score=22.91 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=26.8
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
|++-+|.|.-+ -..+-+...+.|..++++|++++..
T Consensus 11 ~~DlDGTLL~~-~~~i~~~~~~ai~~l~~~Gi~~via 46 (271)
T PRK03669 11 FTDLDGTLLDS-HTYDWQPAAPWLTRLREAQVPVILC 46 (271)
T ss_pred EEeCccCCcCC-CCcCcHHHHHHHHHHHHcCCeEEEE
Confidence 45668888643 2335577888899999999998776
No 130
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=22.37 E-value=1.6e+02 Score=25.23 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=31.8
Q ss_pred hHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeee
Q 045208 119 IRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATAT 165 (176)
Q Consensus 119 V~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~ 165 (176)
+......|.++|.+ |-++-|..++.... ....++.|.+.|+++..
T Consensus 158 i~~aL~~aa~rGV~-VriL~D~~Gs~~~~-~~~~~~~L~~~Gi~v~~ 202 (483)
T PRK01642 158 VAEALIAAAKRGVR-VRLLYDSIGSFAFF-RSPYPEELRNAGVEVVE 202 (483)
T ss_pred HHHHHHHHHHCCCE-EEEEEECCCCCCCC-cHHHHHHHHHCCCEEEE
Confidence 33445577899999 99999998876422 12256778888888764
No 131
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=21.97 E-value=3.5e+02 Score=21.96 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHCCCcE--EEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCCCCCCCeeeecCCCCcc
Q 045208 19 LPNVIRAVEIARQRGILV--VWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAF 96 (176)
Q Consensus 19 i~~i~~li~~~r~~~~~V--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~d~v~~K~~~saf 96 (176)
-+.+.++++.+|++++|+ |++-..+ . .+ .++..+++.+|---
T Consensus 23 ~~~v~~~~~~~r~~~iP~d~i~lD~~~----------------------~-~~-------------~~~f~~d~~~FPdp 66 (339)
T cd06602 23 VDEVKEVVENMRAAGIPLDVQWNDIDY----------------------M-DR-------------RRDFTLDPVRFPGL 66 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEECccc----------------------c-cC-------------ccceecccccCCCc
Confidence 466888899999999994 5542110 0 00 13555666543321
Q ss_pred CCCChHHHHHhCCCCe---eecChhhH------HHHHHHHhCCCC
Q 045208 97 FATHLHSFLQGAGVDS---VQTPNCIR------QTAFDAIALDYQ 132 (176)
Q Consensus 97 ~~t~l~~~L~~~~i~~---~~t~~CV~------~Ta~~a~~~g~~ 132 (176)
....+.+.|+++|++. +.-.+++. ..-.++.+.||=
T Consensus 67 ~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~ 111 (339)
T cd06602 67 KMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVF 111 (339)
T ss_pred cHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeE
Confidence 1157889999999998 22222221 233567777763
No 132
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=21.95 E-value=1.6e+02 Score=21.75 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=26.7
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
|++-+|.|.-. -..+-+...+.|..+++.|++++..
T Consensus 2 ~~DlDGTLl~~-~~~i~~~~~~al~~l~~~Gi~~~~a 37 (225)
T TIGR01482 2 ASDIDGTLTDP-NRAINESALEAIRKAESVGIPVVLV 37 (225)
T ss_pred eEeccCccCCC-CcccCHHHHHHHHHHHHCCCEEEEE
Confidence 34557888633 2457778888999999999988776
No 133
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=21.89 E-value=2.4e+02 Score=19.05 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=26.9
Q ss_pred EEEeccccCCCCHHHHHHHHHHHHhcCcEeee------HHHHHHHhhc
Q 045208 134 VTVVVDATAAATPDVHAANIVDMKNFGIATAT------LQEWSERVAD 175 (176)
Q Consensus 134 v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~------~~e~~~~l~~ 175 (176)
+++++|....... .-...++.+.+.++.+.+ ..+.+..|++
T Consensus 107 iiliTDG~~~~~~-~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 107 IIVLTDGRSDDGG-DPKEAAAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred EEEECCCCCCCCc-chHHHHHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 8888888766544 335567777777777654 4566666654
No 134
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=21.88 E-value=1e+02 Score=25.59 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCcccc---CCccchhHHHHHHHHHHHHCCCcEEEEEcc
Q 045208 7 DGLVKM---DGGKVILPNVIRAVEIARQRGILVVWVVRE 42 (176)
Q Consensus 7 ~g~l~~---~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~ 42 (176)
.|.|.. .+.+.+.+++.+|+++.++.|-+|||..+.
T Consensus 312 pGRLtLi~RmG~dKV~d~LP~li~av~~eG~~VvWs~DP 350 (445)
T COG3200 312 PGRLTLIARMGADKVGDRLPPLVEAVEAEGHQVIWSSDP 350 (445)
T ss_pred CceEEeehhhcchHHhhhhhHHHHHHHHcCCceEEecCC
Confidence 366643 478899999999999999999999999764
No 135
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=21.87 E-value=4.2e+02 Score=21.24 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHCCCcEEEE
Q 045208 17 VILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 17 ~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
--.+.+.++++.+.+.|+..|..
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~ 67 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRL 67 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Confidence 45677888888888888874444
No 136
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.65 E-value=1.5e+02 Score=17.31 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHCCCcEEEEEccc
Q 045208 21 NVIRAVEIARQRGILVVWVVREH 43 (176)
Q Consensus 21 ~i~~li~~~r~~~~~Vi~~~~~~ 43 (176)
.+.++++.+++.|+..+.+.+..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 47789999999999988887643
No 137
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=21.64 E-value=3.2e+02 Score=21.01 Aligned_cols=55 Identities=11% Similarity=0.037 Sum_probs=34.6
Q ss_pred hHHHHHhCCCCe-eecChhhH-HHHHHHHhCCCCcEEEecc-ccCCCCHHHHHHHHHHHH
Q 045208 101 LHSFLQGAGVDS-VQTPNCIR-QTAFDAIALDYQPVTVVVD-ATAAATPDVHAANIVDMK 157 (176)
Q Consensus 101 l~~~L~~~~i~~-~~t~~CV~-~Ta~~a~~~g~~~v~vv~D-a~~~~~~~~h~~~l~~l~ 157 (176)
|.+++.+++.+. +..|..|. .|+....+.|-+ ++|+.- +.-..+. .....++.|+
T Consensus 159 lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad-~~V~Gss~iF~~~~-d~~~~i~~l~ 216 (229)
T PRK09722 159 LKALRERNGLEYLIEVDGSCNQKTYEKLMEAGAD-VFIVGTSGLFNLDE-DIDEAWDIMT 216 (229)
T ss_pred HHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCC-EEEEChHHHcCCCC-CHHHHHHHHH
Confidence 445555566665 77777775 788899999999 999873 3543111 1344455544
No 138
>PRK10444 UMP phosphatase; Provisional
Probab=21.51 E-value=1.1e+02 Score=23.53 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=27.4
Q ss_pred cCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEE
Q 045208 4 IADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVV 40 (176)
Q Consensus 4 ~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~ 40 (176)
++-+|.|...+ .+++...+.++..|+.|.+++++.
T Consensus 6 ~DlDGtL~~~~--~~~p~a~~~l~~L~~~g~~~~~~T 40 (248)
T PRK10444 6 CDIDGVLMHDN--VAVPGAAEFLHRILDKGLPLVLLT 40 (248)
T ss_pred EeCCCceEeCC--eeCccHHHHHHHHHHCCCeEEEEe
Confidence 34467775433 678999999999999999988875
No 139
>PLN02645 phosphoglycolate phosphatase
Probab=21.18 E-value=1.1e+02 Score=24.37 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=28.0
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEc
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVR 41 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~ 41 (176)
|++-+|.|... ..+++...+.++..|++|.+++++..
T Consensus 32 ~~D~DGtl~~~--~~~~~ga~e~l~~lr~~g~~~~~~TN 68 (311)
T PLN02645 32 IFDCDGVIWKG--DKLIEGVPETLDMLRSMGKKLVFVTN 68 (311)
T ss_pred EEeCcCCeEeC--CccCcCHHHHHHHHHHCCCEEEEEeC
Confidence 34556777532 35789999999999999999887753
No 140
>PLN02561 triosephosphate isomerase
Probab=21.11 E-value=2.8e+02 Score=21.73 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=40.6
Q ss_pred CCCCccCCCChHHHHHhCCCCe------------eecChhhHHHHHHHHhCCCCcEEEeccc
Q 045208 91 TRFSAFFATHLHSFLQGAGVDS------------VQTPNCIRQTAFDAIALDYQPVTVVVDA 140 (176)
Q Consensus 91 ~~~saf~~t~l~~~L~~~~i~~------------~~t~~CV~~Ta~~a~~~g~~~v~vv~Da 140 (176)
...++|.+.--...|++.|++- -.||--|-..+..|++.|.. +++.-+=
T Consensus 70 ~~~Ga~TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~-pIvCvGE 130 (253)
T PLN02561 70 KKGGAFTGEISAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLK-VIACVGE 130 (253)
T ss_pred cCCCCccCcCCHHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCE-EEEEcCC
Confidence 4456888888899999999843 77888999999999999999 8886653
No 141
>PRK08197 threonine synthase; Validated
Probab=21.08 E-value=4.6e+02 Score=21.72 Aligned_cols=59 Identities=17% Similarity=0.022 Sum_probs=38.2
Q ss_pred hHHHHHhCCCCe-e--ecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEeeeH
Q 045208 101 LHSFLQGAGVDS-V--QTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATL 166 (176)
Q Consensus 101 l~~~L~~~~i~~-~--~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v~~~ 166 (176)
+...+.+.|.++ + ++-.--.+.|..+...|++ ++|+...... ..-++.|..+|++|+..
T Consensus 118 ~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~-~~v~vp~~~~------~~k~~~~~~~GA~Vi~v 179 (394)
T PRK08197 118 GVSRAKELGVKHLAMPTNGNAGAAWAAYAARAGIR-ATIFMPADAP------EITRLECALAGAELYLV 179 (394)
T ss_pred HHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCc-EEEEEcCCCC------HHHHHHHHHcCCEEEEE
Confidence 334455677777 3 3434444666777788998 8888775332 22467788899998754
No 142
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.83 E-value=1.4e+02 Score=21.33 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=22.2
Q ss_pred CccchhHHHHHHHHHHHH--CCCcEEEEE
Q 045208 14 GGKVILPNVIRAVEIARQ--RGILVVWVV 40 (176)
Q Consensus 14 ~~~~ii~~i~~li~~~r~--~~~~Vi~~~ 40 (176)
..+.+.+++.++++..|+ .+.+|+++.
T Consensus 85 ~~~~~~~~l~~li~~i~~~~~~~~iiv~~ 113 (191)
T cd01836 85 SIARWRKQLAELVDALRAKFPGARVVVTA 113 (191)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 357889999999999998 567887764
No 143
>PTZ00333 triosephosphate isomerase; Provisional
Probab=20.68 E-value=3e+02 Score=21.55 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=40.1
Q ss_pred CCCccCCCChHHHHHhCCCCe------------eecChhhHHHHHHHHhCCCCcEEEecc
Q 045208 92 RFSAFFATHLHSFLQGAGVDS------------VQTPNCIRQTAFDAIALDYQPVTVVVD 139 (176)
Q Consensus 92 ~~saf~~t~l~~~L~~~~i~~------------~~t~~CV~~Ta~~a~~~g~~~v~vv~D 139 (176)
..++|.+.--...|++.|++. -.||..|-.-+..|.+.|.. +++.-+
T Consensus 72 ~~Ga~TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~-pIlCvG 130 (255)
T PTZ00333 72 GSGAFTGEISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLK-VILCIG 130 (255)
T ss_pred cCCCccCcCCHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCE-EEEEcC
Confidence 346898988999999999954 78899999999999999999 777655
No 144
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.66 E-value=3e+02 Score=19.03 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=18.7
Q ss_pred HHHHHhCCCCe--eecChhhHHHHHHHHhCCCCcEEEecccc
Q 045208 102 HSFLQGAGVDS--VQTPNCIRQTAFDAIALDYQPVTVVVDAT 141 (176)
Q Consensus 102 ~~~L~~~~i~~--~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~ 141 (176)
...|+..|++- .-.+......+..|.+.+.+ +++++-..
T Consensus 23 ~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~ad-ii~iSsl~ 63 (132)
T TIGR00640 23 ATAYADLGFDVDVGPLFQTPEEIARQAVEADVH-VVGVSSLA 63 (132)
T ss_pred HHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCC-EEEEcCch
Confidence 34455555554 22233444445555555555 55554333
No 145
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=20.61 E-value=47 Score=22.95 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=26.2
Q ss_pred ccccCCCCCCCCeeeecCCCCccCCCChHHHHHhCCCCe
Q 045208 74 ELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDS 112 (176)
Q Consensus 74 ~~~~~l~~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~ 112 (176)
+|...+.|...-+.+.+..-++| ++.|...||.+|.--
T Consensus 15 qL~~~ypPA~Tt~~L~q~~~d~F-g~aL~~~LR~~GYaV 52 (121)
T PF07283_consen 15 QLAEQYPPAKTTFELKQKDPDPF-GQALENALRAKGYAV 52 (121)
T ss_pred HHHHhcCCCccEEEEEcCCCChH-HHHHHHHHHhcCcEE
Confidence 34444555444556656778887 789999999988654
No 146
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.53 E-value=1.3e+02 Score=20.61 Aligned_cols=27 Identities=4% Similarity=0.064 Sum_probs=21.3
Q ss_pred CccchhHHHHHHHHHHHHC--CCcEEEEE
Q 045208 14 GGKVILPNVIRAVEIARQR--GILVVWVV 40 (176)
Q Consensus 14 ~~~~ii~~i~~li~~~r~~--~~~Vi~~~ 40 (176)
..+...+++.++++..|+. +.+|+++.
T Consensus 58 ~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 86 (157)
T cd01833 58 DPDTAPDRLRALIDQMRAANPDVKIIVAT 86 (157)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4578899999999999887 55677664
No 147
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=20.46 E-value=2.7e+02 Score=21.12 Aligned_cols=52 Identities=13% Similarity=0.023 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHhcCcEe-eeHHHHHHHh
Q 045208 117 NCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIAT-ATLQEWSERV 173 (176)
Q Consensus 117 ~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~~g~~v-~~~~e~~~~l 173 (176)
..-+.|+..|.+.|.. |.++.....+.. .+-.. .|.+.|+.. .+.+++++.|
T Consensus 168 sGtl~ta~~A~~~gr~-v~~~pg~~~~~~---~~G~~-~Li~~GA~~i~~~~d~~~~~ 220 (220)
T TIGR00732 168 SGALITARYALEQGRE-VFAYPGDLNSPE---SDGCH-KLIEQGAALITSAKDILETL 220 (220)
T ss_pred CchHHHHHHHHHhCCc-EEEEcCCCCCcc---chHHH-HHHHCCCEEECCHHHHHHhC
Confidence 3567899999999998 999876554322 12222 233446655 5567777654
No 148
>PTZ00445 p36-lilke protein; Provisional
Probab=20.36 E-value=3.7e+02 Score=20.63 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=40.9
Q ss_pred ChHHHHHhCCCCeeecChhhHHHHHHHHhCCCCcEE-EeccccCCCCHHHHHHHHHHHHhcC--cEeee-HHH
Q 045208 100 HLHSFLQGAGVDSVQTPNCIRQTAFDAIALDYQPVT-VVVDATAAATPDVHAANIVDMKNFG--IATAT-LQE 168 (176)
Q Consensus 100 ~l~~~L~~~~i~~~~t~~CV~~Ta~~a~~~g~~~v~-vv~Da~~~~~~~~h~~~l~~l~~~g--~~v~~-~~e 168 (176)
.|.+.|++.||+.+.+| ...|+......||.+-. ...+-..+.+++... -+..|.+.| +.|+| |++
T Consensus 33 ~~v~~L~~~GIk~Va~D--~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~-~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 33 KFVDLLNECGIKVIASD--FDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKI-LGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred HHHHHHHHcCCeEEEec--chhhhhhhhcccccCCCcchhhhhccCCHHHHH-HHHHHHHCCCeEEEEEccch
Confidence 36778999999986666 35777777778876122 344555566666544 466666543 34444 444
No 149
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=20.32 E-value=2e+02 Score=20.80 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=25.8
Q ss_pred CCcccc-CCccchhHHHHHHHHHHHHCCCcEEEEEccc
Q 045208 7 DGLVKM-DGGKVILPNVIRAVEIARQRGILVVWVVREH 43 (176)
Q Consensus 7 ~g~l~~-~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~ 43 (176)
+|+... .....-++...++++.+.+.+.||+.+...+
T Consensus 54 Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~ 91 (188)
T cd01741 54 GGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGH 91 (188)
T ss_pred CCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccH
Confidence 454433 2334456788889999988999999996543
No 150
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.26 E-value=1.7e+02 Score=19.53 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHCCCcEEEEEc
Q 045208 18 ILPNVIRAVEIARQRGILVVWVVR 41 (176)
Q Consensus 18 ii~~i~~li~~~r~~~~~Vi~~~~ 41 (176)
--+.+.+.++.+|++|.+||.+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~ 82 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTD 82 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEEC
Confidence 346788889999999999988853
No 151
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=20.16 E-value=5e+02 Score=21.38 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=28.2
Q ss_pred hHHHHHhCCCCe--eecChhhHHH-----HHHHH-hCCCCcEEEeccccCCCCHHHHHHHHHHHHh
Q 045208 101 LHSFLQGAGVDS--VQTPNCIRQT-----AFDAI-ALDYQPVTVVVDATAAATPDVHAANIVDMKN 158 (176)
Q Consensus 101 l~~~L~~~~i~~--~~t~~CV~~T-----a~~a~-~~g~~~v~vv~Da~~~~~~~~h~~~l~~l~~ 158 (176)
|.+++++.|.++ +.|+-.+..+ +...+ +.|++ +.+..+.....+-+.-+.+++.++.
T Consensus 21 l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~-~~~~~~v~~~p~~~~v~~~~~~~~~ 85 (382)
T PRK10624 21 LTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLA-YEIYDGVKPNPTIEVVKEGVEVFKA 85 (382)
T ss_pred HHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCe-EEEeCCCCCCcCHHHHHHHHHHHHh
Confidence 455555555555 5555444433 22223 34666 6666555554444444555555443
No 152
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=20.13 E-value=1.1e+02 Score=18.39 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCCcEEEeccc
Q 045208 120 RQTAFDAIALDYQPVTVVVDA 140 (176)
Q Consensus 120 ~~Ta~~a~~~g~~~v~vv~Da 140 (176)
+++|..+.+.|++ |+|++-.
T Consensus 9 l~aA~~L~~~g~~-v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYR-VTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSE-EEEEESS
T ss_pred HHHHHHHHHCCCc-EEEEecC
Confidence 5677788888999 9998853
No 153
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=20.11 E-value=2e+02 Score=20.92 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=27.4
Q ss_pred ccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEE
Q 045208 3 FIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWV 39 (176)
Q Consensus 3 F~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~ 39 (176)
|++=+|.|.-++...+-+.+.+.|+..++.|++++.+
T Consensus 3 ~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~ 39 (204)
T TIGR01484 3 FFDLDGTLLDPNAHELSPETIEALERLREAGVKVVLV 39 (204)
T ss_pred EEeCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEE
Confidence 3455788865443457788889999999999877776
No 154
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=20.05 E-value=49 Score=20.95 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=17.3
Q ss_pred cCCCCccCCCChHHHHHhCC
Q 045208 90 KTRFSAFFATHLHSFLQGAG 109 (176)
Q Consensus 90 K~~~saf~~t~l~~~L~~~~ 109 (176)
|...++|.|++|.+||-+++
T Consensus 23 ~~y~~cF~GselVdWL~~~~ 42 (81)
T cd04448 23 RTYTNCILGKELVNWLIRQG 42 (81)
T ss_pred EEcCcccChHHHHHHHHHcC
Confidence 56788999999999999865
No 155
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=20.04 E-value=2e+02 Score=21.43 Aligned_cols=37 Identities=8% Similarity=0.122 Sum_probs=31.3
Q ss_pred ccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChh
Q 045208 15 GKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVE 51 (176)
Q Consensus 15 ~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~ 51 (176)
.+.++++|.+++...++.|.+|.-+...|+......+
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t~~L~ 58 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAATSRLP 58 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCccccchH
Confidence 6889999999999999999999999888876654443
No 156
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.01 E-value=2.1e+02 Score=20.80 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=27.0
Q ss_pred hHHHHHhCCCCe----e---ecChhhHHHHHHHHhCCCCcEEEecc
Q 045208 101 LHSFLQGAGVDS----V---QTPNCIRQTAFDAIALDYQPVTVVVD 139 (176)
Q Consensus 101 l~~~L~~~~i~~----~---~t~~CV~~Ta~~a~~~g~~~v~vv~D 139 (176)
-.+.|++.||+. + -|.-=+..-+..|.++|++ |++---
T Consensus 21 Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~-viIAgA 65 (162)
T COG0041 21 AAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVK-VIIAGA 65 (162)
T ss_pred HHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCe-EEEecC
Confidence 356677778876 2 3445567778899999998 887543
Done!