BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045209
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 123/251 (49%), Gaps = 38/251 (15%)
Query: 231 GNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLT 290
G IP +IA L QL YL + H +SG +PDFL + +L TLD S+N SGTLP S S+L
Sbjct: 91 GPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 291 KIFNLNLAYNSLTDPFPVMN---VKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKC 347
+ + N ++ P K S+ +S N+ +IP P +L LA
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKIP------PTFANLNLA-- 200
Query: 348 GIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRI 407
++DLS N + G L + + + L F++ + +
Sbjct: 201 ------------------FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 408 VKTLKVLDLSRNLVFGKLPKAISG---LDKLNVSFNNLCGEIPK----TKFPASAFVGNE 460
K L LDL N ++G LP+ ++ L LNVSFNNLCGEIP+ +F SA+ N+
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Query: 461 CLCGPPLPSSS 471
CLCG PLP+ +
Sbjct: 303 CLCGSPLPACT 313
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 137/295 (46%), Gaps = 21/295 (7%)
Query: 22 CHPDDESGLSGFKSAITQDPSGMLSSWKPGTDCC--TWTGITCLSGD---RVTSLSLNGQ 76
C+P D+ L K + +P+ LSSW P TDCC TW G+ C + RV +L L+G
Sbjct: 3 CNPQDKQALLQIKKDL-GNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 77 PEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQ 136
P + I SSL + L +Y+ + N+ G P I+ L +L Y+YI + +SG
Sbjct: 61 -NLPKPY---PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116
Query: 137 IPANIGKLTQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNL- 195
IP + ++ L L FS N +G +P SIS N ++GAIP+ L
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176
Query: 196 TYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKLGHNVLS 255
T + + N+L+G IP G+ S Q + L N L+
Sbjct: 177 TSMTISRNRLTGKIPP-TFANLNLAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLA 234
Query: 256 ---GKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP 307
GKV G +L+ LDL N+ GTLP+ + L + +LN+++N+L P
Sbjct: 235 FDLGKV----GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 174/384 (45%), Gaps = 52/384 (13%)
Query: 101 IYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGP 160
+YLQ+ G +G P +S EL +++ N LSG IP+++G L++L L N G
Sbjct: 399 LYLQNNG-FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 161 IPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXX 220
IP + N LTG IP+G+S NL ++ L +N+L+G IP
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-------- 509
Query: 221 XXXXXXXXXXGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSG 280
I L L LKL +N SG +P LG SL LDL+ N F+G
Sbjct: 510 ----------------IGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 281 TLPKS-FSNLTKI---FNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSS 336
T+P + F KI F Y + + G +L L + +Q+ T +
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL-LEFQGIRSEQLNRLSTRN 611
Query: 337 PIIFSLKLAKCGIKMNLNNWKPAQTYFYD----YIDLSENEISGGPVELLNRTDYLVEFR 392
P C I + + T+ + ++D+S N +SG + + YL
Sbjct: 612 P---------CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 393 ASGSKLKFNM-DSLRIVKTLKVLDLSRNLVFGKLPKAISG---LDKLNVSFNNLCGEIPK 448
+ + ++ D + ++ L +LDLS N + G++P+A+S L ++++S NNL G IP+
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Query: 449 T----KFPASAFVGNECLCGPPLP 468
FP + F+ N LCG PLP
Sbjct: 723 MGQFETFPPAKFLNNPGLCGYPLP 746
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 141/317 (44%), Gaps = 33/317 (10%)
Query: 120 LPELKYIYIENNKLSGQIPANI-GKLTQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXX 178
L L+Y+ + NK +G+IP + G L L SGN F G +P
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 179 NFLTGAIP-NGISQLKNLTYLDLQHNQLSGAIPD-IXXXXXXXXXXXXXXXXXXGNI-PT 235
N +G +P + + +++ L LDL N+ SG +P+ + G I P
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 236 SIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNL 295
+ LQ L L +N +GK+P L L +L LS+N SGT+P S +L+K+ +L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 296 NLAYNSLTDPFP--VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNL 353
L N L P +M VK +E+L L +N +IPS L+ C NL
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPS-----------GLSNC---TNL 492
Query: 354 NNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDS-LRIVKTLK 412
N +I LS N ++G + + R + L + S + N+ + L ++L
Sbjct: 493 N-----------WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 413 VLDLSRNLVFGKLPKAI 429
LDL+ NL G +P A+
Sbjct: 542 WLDLNTNLFNGTIPAAM 558
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 102/252 (40%), Gaps = 32/252 (12%)
Query: 84 LSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGK 143
L+G I S L NL I L + ++G P +I L L + + NN SG IPA +G
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSN-NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 144 LTQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTGA----IPN------------ 187
L L + N F G +I NF+ G I N
Sbjct: 537 CRSLIWLDLNTNLFNG----TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 188 -----GI--SQLKNLTY---LDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSI 237
GI QL L+ ++ G G IP I
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 238 ASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNL 297
S+ P L L LGHN +SG +PD +G L+ LDLS N+ G +P++ S LT + ++L
Sbjct: 653 GSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 298 AYNSLTDPFPVM 309
+ N+L+ P P M
Sbjct: 712 SNNNLSGPIPEM 723
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 106/441 (24%), Positives = 181/441 (41%), Gaps = 123/441 (27%)
Query: 44 MLSSWKPGTDCCTWTGITCLSGDRVTSLSLNGQPEK---------------------PNS 82
+L W + CT+ G+TC D+VTS+ L+ +P NS
Sbjct: 29 LLPDWSSNKNPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS 87
Query: 83 FLSGTIS--------SSLVKVKN-LGG--IYLQDLGNISGNFPDFISGLPELKYIYIENN 131
++G++S +SL +N L G L LG+ SG LK++ + +N
Sbjct: 88 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG-----------LKFLNVSSN 136
Query: 132 KLS--GQIPANIGKLTQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTGAIPNGI 189
L G++ + KL LE L S N +G N + + +G
Sbjct: 137 TLDFPGKVSGGL-KLNSLEVLDLSANSISG------------------ANVVGWVLSDGC 177
Query: 190 SQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKL 249
+LK +L + N++SG + S L++L +
Sbjct: 178 GELK---HLAISGNKISGDVD---------------------------VSRCVNLEFLDV 207
Query: 250 GHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVM 309
N S +P FLG +L LD+S N+ SG ++ S T++ LN++ N P P +
Sbjct: 208 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266
Query: 310 NVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDL 369
+K ++ L L+ N+F +IP +++ + + G+ ++ N++ A F+
Sbjct: 267 PLKSLQYLSLAENKFT-GEIPDFLSGACDTLT------GLDLSGNHFYGAVPPFF----- 314
Query: 370 SENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAI 429
G L + F + MD+L ++ LKVLDLS N G+LP+++
Sbjct: 315 ------GSCSLLESLALSSNNFSG-----ELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 430 SGLDK----LNVSFNNLCGEI 446
+ L L++S NN G I
Sbjct: 364 TNLSASLLTLDLSSNNFSGPI 384
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 174/384 (45%), Gaps = 52/384 (13%)
Query: 101 IYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGP 160
+YLQ+ G +G P +S EL +++ N LSG IP+++G L++L L N G
Sbjct: 396 LYLQNNG-FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 161 IPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXX 220
IP + N LTG IP+G+S NL ++ L +N+L+G IP
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-------- 506
Query: 221 XXXXXXXXXXGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSG 280
I L L LKL +N SG +P LG SL LDL+ N F+G
Sbjct: 507 ----------------IGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 281 TLPKS-FSNLTKI---FNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSS 336
T+P + F KI F Y + + G +L L + +Q+ T +
Sbjct: 550 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL-LEFQGIRSEQLNRLSTRN 608
Query: 337 PIIFSLKLAKCGIKMNLNNWKPAQTYFYD----YIDLSENEISGGPVELLNRTDYLVEFR 392
P C I + + T+ + ++D+S N +SG + + YL
Sbjct: 609 P---------CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 393 ASGSKLKFNM-DSLRIVKTLKVLDLSRNLVFGKLPKAISG---LDKLNVSFNNLCGEIPK 448
+ + ++ D + ++ L +LDLS N + G++P+A+S L ++++S NNL G IP+
Sbjct: 660 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Query: 449 T----KFPASAFVGNECLCGPPLP 468
FP + F+ N LCG PLP
Sbjct: 720 MGQFETFPPAKFLNNPGLCGYPLP 743
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 141/317 (44%), Gaps = 33/317 (10%)
Query: 120 LPELKYIYIENNKLSGQIPANI-GKLTQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXX 178
L L+Y+ + NK +G+IP + G L L SGN F G +P
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 179 NFLTGAIP-NGISQLKNLTYLDLQHNQLSGAIPD-IXXXXXXXXXXXXXXXXXXGNI-PT 235
N +G +P + + +++ L LDL N+ SG +P+ + G I P
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 236 SIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNL 295
+ LQ L L +N +GK+P L L +L LS+N SGT+P S +L+K+ +L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 296 NLAYNSLTDPFP--VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNL 353
L N L P +M VK +E+L L +N +IPS L+ C NL
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPS-----------GLSNC---TNL 489
Query: 354 NNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDS-LRIVKTLK 412
N +I LS N ++G + + R + L + S + N+ + L ++L
Sbjct: 490 N-----------WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 413 VLDLSRNLVFGKLPKAI 429
LDL+ NL G +P A+
Sbjct: 539 WLDLNTNLFNGTIPAAM 555
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 103/254 (40%), Gaps = 36/254 (14%)
Query: 84 LSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGK 143
L+G I S L NL I L + ++G P +I L L + + NN SG IPA +G
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSN-NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 144 LTQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTGA----IPN--------GISQ 191
L L + N F G +I NF+ G I N G
Sbjct: 534 CRSLIWLDLNTNLFNG----TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 192 LKNLTYLDLQHNQLS----------------GAIPDIXXXXXXXXXXXXXXXXXXGNIPT 235
L L + ++ QL+ G G IP
Sbjct: 590 L--LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 236 SIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNL 295
I S+ P L L LGHN +SG +PD +G L+ LDLS N+ G +P++ S LT + +
Sbjct: 648 EIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 296 NLAYNSLTDPFPVM 309
+L+ N+L+ P P M
Sbjct: 707 DLSNNNLSGPIPEM 720
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 106/441 (24%), Positives = 181/441 (41%), Gaps = 123/441 (27%)
Query: 44 MLSSWKPGTDCCTWTGITCLSGDRVTSLSLNGQPEK---------------------PNS 82
+L W + CT+ G+TC D+VTS+ L+ +P NS
Sbjct: 26 LLPDWSSNKNPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS 84
Query: 83 FLSGTIS--------SSLVKVKN-LGG--IYLQDLGNISGNFPDFISGLPELKYIYIENN 131
++G++S +SL +N L G L LG+ SG LK++ + +N
Sbjct: 85 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG-----------LKFLNVSSN 133
Query: 132 KLS--GQIPANIGKLTQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTGAIPNGI 189
L G++ + KL LE L S N +G N + + +G
Sbjct: 134 TLDFPGKVSGGL-KLNSLEVLDLSANSISG------------------ANVVGWVLSDGC 174
Query: 190 SQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKL 249
+LK +L + N++SG + S L++L +
Sbjct: 175 GELK---HLAISGNKISGDVD---------------------------VSRCVNLEFLDV 204
Query: 250 GHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVM 309
N S +P FLG +L LD+S N+ SG ++ S T++ LN++ N P P +
Sbjct: 205 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 263
Query: 310 NVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDL 369
+K ++ L L+ N+F +IP +++ + + G+ ++ N++ A F+
Sbjct: 264 PLKSLQYLSLAENKFT-GEIPDFLSGACDTLT------GLDLSGNHFYGAVPPFF----- 311
Query: 370 SENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAI 429
G L + F + MD+L ++ LKVLDLS N G+LP+++
Sbjct: 312 ------GSCSLLESLALSSNNFSG-----ELPMDTLLKMRGLKVLDLSFNEFSGELPESL 360
Query: 430 SGLDK----LNVSFNNLCGEI 446
+ L L++S NN G I
Sbjct: 361 TNLSASLLTLDLSSNNFSGPI 381
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 82/224 (36%), Gaps = 32/224 (14%)
Query: 124 KYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTG 183
K + +++NKLS +LT+L L + N+ +P+ I +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 184 AIPNGI-SQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAP 242
A+P G+ QL NL L L NQL +P +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKS-------------------------LPPRVFDSLT 133
Query: 243 QLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302
+L YL LG+N L K SL L L NQ +F LT++ L L N L
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 303 TDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAK 346
P +E L + LQ+ P T + II+ K K
Sbjct: 194 K-RVPEGAFDSLEKLKM----LQLQENPWDCTCNGIIYMAKWLK 232
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Query: 188 GISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYL 247
+ +L NLTYL L NQL ++P+ ++P + L YL
Sbjct: 80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 248 KLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302
L HN L K +L LDLS+NQ F LT++ +L L N L
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 242 PQLQYLKLGHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAY 299
PQL+ L LG+N K+ D L + LDTL L NQ S +P + LTK+ NL L+
Sbjct: 152 PQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 300 NSLTDPFPVMNVKGIESLDL 319
N ++D + +K ++ L+L
Sbjct: 206 NHISDLRALAGLKNLDVLEL 225
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LP+L+ +Y+ NNK++ + +LT+L+ LS N+ + +P
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 85/226 (37%), Gaps = 13/226 (5%)
Query: 118 SGLPE-LKYIYIENNKLSGQIPANIGKLTQLEALSFSGN--RFTGPIPSSISXXXXXXXX 174
+G+P + +E+NKL KLTQL LS S N F G S
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83
Query: 175 XXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIP 234
N + N + L+ L +LD QH+ L
Sbjct: 84 DLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142
Query: 235 TSIASLAPQLQYLKLGHNVLSGK-VPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIF 293
I + L+ LK+ N +PD + +L LDLS Q P +F++L+ +
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 294 NLNLAYNSL--TDPFPVMNVKGIESLDLSYNQF------HLQQIPS 331
LN+++N+ D FP + ++ LD S N LQ PS
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 27/126 (21%)
Query: 87 TISSSLVKVKNLGGIYLQ--DLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKL 144
T+SS+ + ++ L + Q +L +S F F+S L L Y+ I + L
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 145 TQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQ 204
+ LE L +GN F NFL P+ ++L+NLT+LDL Q
Sbjct: 150 SSLEVLKMAGNSF-------------------QENFL----PDIFTELRNLTFLDLSQCQ 186
Query: 205 LSGAIP 210
L P
Sbjct: 187 LEQLSP 192
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 242 PQLQYLKLGHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAY 299
PQL+ L LG+N K+ D L + LDTL L NQ S +P + LTK+ NL L+
Sbjct: 152 PQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 300 NSLTDPFPVMNVKGIESLDL 319
N ++D + +K ++ L+L
Sbjct: 206 NHISDLRALAGLKNLDVLEL 225
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LP+L+ +Y+ NNK++ + +LT+L+ LS N+ + +P
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 242 PQLQYLKLGHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAY 299
PQL+ L LG+N K+ D L + LDTL L NQ S +P + LTK+ NL L+
Sbjct: 152 PQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 300 NSLTDPFPVMNVKGIESLDL 319
N ++D + +K ++ L+L
Sbjct: 206 NHISDLRALAGLKNLDVLEL 225
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LP+L+ +Y+ NNK++ + +LT+L+ LS N+ + +P
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 242 PQLQYLKLGHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAY 299
PQL+ L LG+N K+ D L + LDTL L NQ S +P + LTK+ NL L+
Sbjct: 129 PQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 182
Query: 300 NSLTDPFPVMNVKGIESLDL 319
N ++D + +K ++ L+L
Sbjct: 183 NHISDLRALAGLKNLDVLEL 202
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LP+L+ +Y+ NNK++ + +LT+L+ LS N+ + +P
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 242 PQLQYLKLGHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAY 299
PQL+ L LG+N K+ D L + LDTL L NQ S +P + LTK+ NL L+
Sbjct: 131 PQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184
Query: 300 NSLTDPFPVMNVKGIESLDL 319
N ++D + +K ++ L+L
Sbjct: 185 NHISDLRALAGLKNLDVLEL 204
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LP+L+ +Y+ NNK++ + +LT+L+ LS N+ + +P
Sbjct: 130 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 170
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 31/113 (27%)
Query: 191 QLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKLG 250
+L +L L+L+ NQL+G P+ A +Q L+LG
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEG-------------------------ASHIQELQLG 86
Query: 251 HN---VLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYN 300
N +S K+ FLG H L TL+L NQ S +P SF +L + +LNLA N
Sbjct: 87 ENKIKEISNKM--FLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 101 IYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANI-GKLTQLEALSFSGNRFTG 159
+YL D I+ P L LK +Y+ +N+L G +P + LTQL L N+ T
Sbjct: 45 LYLHD-NQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT- 101
Query: 160 PIPSSI-SXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQL 205
+PS++ N LT +P GI +L +LT+L L NQL
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 244 LQYLKLGHNVLSGKVPDFLGKFHSLD---TLDLSWNQFSGTLPKSFSNLTKIFNLNLAYN 300
L+ L LG N L G +P +G F SL LDL NQ + F L + L + N
Sbjct: 66 LKELYLGSNQL-GALP--VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Query: 301 SLTDPFPVMNVKGIESL----DLSYNQFHLQQIP-------SWVTSSPIIFSLKLAKCGI 349
LT+ P +GIE L L+ +Q L+ IP S +T + + + +C
Sbjct: 123 KLTE-LP----RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177
Query: 350 KMNLNNWKPAQT 361
M L NW T
Sbjct: 178 IMYLRNWVADHT 189
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 242 PQLQYLKLGHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAY 299
PQL+ L LG+N K+ D L + LDTL L NQ S +P + LTK+ NL L+
Sbjct: 132 PQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 185
Query: 300 NSLTDPFPVMNVKGIESLDL 319
N ++D + +K ++ L+L
Sbjct: 186 NHISDLRALAGLKNLDVLEL 205
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LP+L+ +Y+ NNK++ + +LT+L+ LS N+ + +P
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 171
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 242 PQLQYLKLGHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAY 299
PQL+ L LG+N K+ D L + LDTL L NQ S +P + LTK+ NL L+
Sbjct: 134 PQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 300 NSLTDPFPVMNVKGIESLDL 319
N ++D + +K ++ L+L
Sbjct: 188 NHISDLRALAGLKNLDVLEL 207
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LP+L+ +Y+ NNK++ + +LT+L+ LS N+ + +P
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 173
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 242 PQLQYLKLGHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAY 299
PQL+ L LG+N K+ D L + LDTL L NQ S +P + LTK+ NL L+
Sbjct: 154 PQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 207
Query: 300 NSLTDPFPVMNVKGIESLDL 319
N ++D + +K ++ L+L
Sbjct: 208 NHISDLRALAGLKNLDVLEL 227
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LP+L+ +Y+ NNK++ + +LT+L+ LS N+ + +P
Sbjct: 153 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 193
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 242 PQLQYLKLGHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAY 299
PQL+ L LG+N K+ D L + LDTL L NQ S +P + LTK+ NL L+
Sbjct: 134 PQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 300 NSLTDPFPVMNVKGIESLDL 319
N ++D + +K ++ L+L
Sbjct: 188 NHISDLRALAGLKNLDVLEL 207
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LP+L+ +Y+ NNK++ + +LT+L+ LS N+ + +P
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 173
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 242 PQLQYLKLGHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAY 299
PQL+ L LG+N K+ D L + LDTL L NQ S +P + LTK+ NL L+
Sbjct: 129 PQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSK 182
Query: 300 NSLTDPFPVMNVKGIESLDL 319
N ++D + +K ++ L+L
Sbjct: 183 NHISDLRALCGLKNLDVLEL 202
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LP+L+ +Y+ NNK++ + +LT+L+ LS N+ + +P
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 34/149 (22%)
Query: 192 LKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKL-G 250
L+NL YLD+ H A I ++SL + LK+ G
Sbjct: 444 LRNLIYLDISHTHTRVAF---------------------NGIFNGLSSL----EVLKMAG 478
Query: 251 HNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL--TDPFPV 308
++ +PD + +L LDLS Q P +F++L+ + LN+++N+ D FP
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538
Query: 309 MNVKGIESLDLSYNQF------HLQQIPS 331
+ ++ LD S N LQ PS
Sbjct: 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPS 567
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 37/159 (23%)
Query: 54 CCTWTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQ--DLGNISG 111
CC+ + +S + LS NG T+SS+ + ++ L + Q +L +S
Sbjct: 388 CCSQSDFGTISL-KYLDLSFNGVI---------TMSSNFLGLEQLEHLDFQHSNLKQMS- 436
Query: 112 NFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISXXXXX 171
F F+S L L Y+ I + L+ LE L +GN F
Sbjct: 437 EFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ------------- 482
Query: 172 XXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIP 210
NFL P+ ++L+NLT+LDL QL P
Sbjct: 483 ------ENFL----PDIFTELRNLTFLDLSQCQLEQLSP 511
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 34/149 (22%)
Query: 192 LKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKL-G 250
L+NL YLD+ H A I ++SL + LK+ G
Sbjct: 420 LRNLIYLDISHTHTRVAF---------------------NGIFNGLSSL----EVLKMAG 454
Query: 251 HNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL--TDPFPV 308
++ +PD + +L LDLS Q P +F++L+ + LN+++N+ D FP
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Query: 309 MNVKGIESLDLSYNQF------HLQQIPS 331
+ ++ LD S N LQ PS
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 27/126 (21%)
Query: 87 TISSSLVKVKNLGGIYLQ--DLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKL 144
T+SS+ + ++ L + Q +L +S F F+S L L Y+ I + L
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 145 TQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQ 204
+ LE L +GN F NFL P+ ++L+NLT+LDL Q
Sbjct: 445 SSLEVLKMAGNSFQ-------------------ENFL----PDIFTELRNLTFLDLSQCQ 481
Query: 205 LSGAIP 210
L P
Sbjct: 482 LEQLSP 487
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 238 ASLAPQLQYLKLGHNVLSG-KVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLN 296
A + ++Q + +G+N L V L K L L+ +NQ G LP +F + K+ +LN
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLN 359
Query: 297 LAYNSLTDPFPVMNVKGIESLD-LSYNQFHLQQIP------SWVTSSPIIFSLKLAKCGI 349
LAYN +T+ P E ++ LS+ L+ IP S S I FS
Sbjct: 360 LAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVD 418
Query: 350 KMNLNNWKPA--QTYFYDYIDLSENEISGGPVELL 382
N + P + I+LS N+IS P EL
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 258 VPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESL 317
VP L + L +DLS N+ S +SFSN+T++ L L+YN L P G++SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSL 104
Query: 318 DL 319
L
Sbjct: 105 RL 106
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 194 NLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKLGHNV 253
N+T L+L HNQL +P + + QL L +G N
Sbjct: 36 NITVLNLTHNQLR-------------------------RLPAANFTRYSQLTSLDVGFNT 70
Query: 254 LSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL--TDPFPVMNV 311
+S P+ K L L+L N+ S K+F+ T + L+L NS+ P +
Sbjct: 71 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 130
Query: 312 KGIESLDLSYN 322
K + +LDLS+N
Sbjct: 131 KNLITLDLSHN 141
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 104/253 (41%), Gaps = 50/253 (19%)
Query: 187 NGISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQY 246
+G+ L NLT ++ +NQL+ P N IA + P
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNN---QIADITPLANL 106
Query: 247 LKL-GHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLT 303
L G + + ++ D L +L+ L+LS N S + S LT + LN + N +T
Sbjct: 107 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVT 164
Query: 304 DPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYF 363
D P+ N+ +E LD+S N K++ + L N +
Sbjct: 165 DLKPLANLTTLERLDISSN--------------------KVSDISVLAKLTNLES----- 199
Query: 364 YDYIDLSENEISG-GPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVF 422
+ + N+IS P+ +L D E +G++LK ++ +L + L LDL+ N +
Sbjct: 200 ---LIATNNQISDITPLGILTNLD---ELSLNGNQLK-DIGTLASLTNLTDLDLANNQIS 252
Query: 423 GKLPKAISGLDKL 435
P +SGL KL
Sbjct: 253 NLAP--LSGLTKL 263
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 98/241 (40%), Gaps = 22/241 (9%)
Query: 89 SSSLVKVKNLGGIY-LQDLGNISGNFPDF--ISGLPELKYIYIENNKLSGQIPANIGKLT 145
S+++ + L G+ LQ L S D ++ L L+ + I +NK+S + + KLT
Sbjct: 138 SNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLT 195
Query: 146 QLEALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQL 205
LE+L + N+ + P I G + + L NLT LDL +NQ+
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQI 251
Query: 206 SGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLA--PQLQYLKLGHNVLSGKVPDFLG 263
S P N ++I+ LA L L+L N L P +
Sbjct: 252 SNLAP-------LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--IS 302
Query: 264 KFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQ 323
+L L L +N S P S+LTK+ L N ++D + N+ I L +NQ
Sbjct: 303 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ 360
Query: 324 F 324
Sbjct: 361 I 361
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 24/181 (13%)
Query: 98 LGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRF 157
L G L+D+G ++ L L + + NN++S P + LT+L L N+
Sbjct: 224 LNGNQLKDIGTLAS--------LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Query: 158 TGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXX 217
+ P ++ N L P IS LKNLTYL L N +S P
Sbjct: 274 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP------- 322
Query: 218 XXXXXXXXXXXXXGNIPTSIASLA--PQLQYLKLGHNVLSGKVP-DFLGKFHSLDTLDLS 274
N + ++SLA + +L GHN +S P L + L D +
Sbjct: 323 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 382
Query: 275 W 275
W
Sbjct: 383 W 383
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 194 NLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKLGHNV 253
N+T L+L HNQL +P + + QL L +G N
Sbjct: 31 NITVLNLTHNQLR-------------------------RLPAANFTRYSQLTSLDVGFNT 65
Query: 254 LSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL--TDPFPVMNV 311
+S P+ K L L+L N+ S K+F+ T + L+L NS+ P +
Sbjct: 66 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 125
Query: 312 KGIESLDLSYN 322
K + +LDLS+N
Sbjct: 126 KNLITLDLSHN 136
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 194 NLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKLGHNV 253
N+T L+L HNQL +P + + QL L +G N
Sbjct: 26 NITVLNLTHNQLR-------------------------RLPAANFTRYSQLTSLDVGFNT 60
Query: 254 LSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL--TDPFPVMNV 311
+S P+ K L L+L N+ S K+F+ T + L+L NS+ P +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 312 KGIESLDLSYN 322
K + +LDLS+N
Sbjct: 121 KNLITLDLSHN 131
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 18/98 (18%)
Query: 67 RVTSLSLNGQPEKPNSFLSG--------------TISSSLVKVKNLGGIYLQDLGNISGN 112
++T L L+G P K S ++G T + L + NL +YL DL I+
Sbjct: 92 KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL-DLNQITNI 150
Query: 113 FPDFISGLPELKYIYIENNKLSGQIP-ANIGKLTQLEA 149
P ++GL L+Y+ I NN+++ P AN+ KLT L A
Sbjct: 151 SP--LAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRA 186
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 271 LDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 324
L+L NQ + P NLTKI L L+ N L + + ++ I++LDL+ Q
Sbjct: 74 LELKDNQITDLTP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 125
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
Query: 188 GISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYL 247
+ +L NLTYL L NQL ++P+ ++P + L YL
Sbjct: 80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 248 KLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302
L HN L K +L LDL NQ F LT++ L+L N L
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 50/253 (19%)
Query: 187 NGISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQY 246
+G+ L NLT ++ +NQL+ P N IA + P
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNN---QIADITPLANL 106
Query: 247 LKL-GHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLT 303
L G + + ++ D L +L+ L+LS N S + S LT + L+ + N +T
Sbjct: 107 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVT 164
Query: 304 DPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYF 363
D P+ N+ +E LD+S N K++ + L N +
Sbjct: 165 DLKPLANLTTLERLDISSN--------------------KVSDISVLAKLTNLES----- 199
Query: 364 YDYIDLSENEISG-GPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVF 422
+ + N+IS P+ +L D E +G++LK ++ +L + L LDL+ N +
Sbjct: 200 ---LIATNNQISDITPLGILTNLD---ELSLNGNQLK-DIGTLASLTNLTDLDLANNQIS 252
Query: 423 GKLPKAISGLDKL 435
P +SGL KL
Sbjct: 253 NLAP--LSGLTKL 263
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 123/303 (40%), Gaps = 57/303 (18%)
Query: 28 SGLSGFKSAITQ-DPSGMLSSW-KPGTDCCTWTGITCLSGDRVTSLSLNGQPEKPNSFLS 85
+GL+ F + IT DP L++ + T + I+ LSG +TSL + SF S
Sbjct: 110 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG--LTSL-------QQLSFSS 160
Query: 86 GTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLT 145
++ L + NL + D+ + + ++ L L+ + NN++S P +G LT
Sbjct: 161 NQVTD-LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT 217
Query: 146 QLEALSFSGNRF--TGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHN 203
L+ LS +GN+ G + S L NLT LDL +N
Sbjct: 218 NLDELSLNGNQLKDIGTLAS----------------------------LTNLTDLDLANN 249
Query: 204 QLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLA--PQLQYLKLGHNVLSGKVPDF 261
Q+S P N ++I+ LA L L+L N L P
Sbjct: 250 QISNLAP-------LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-- 300
Query: 262 LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSY 321
+ +L L L +N S P S+LTK+ L + N ++D + N+ I L +
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGH 358
Query: 322 NQF 324
NQ
Sbjct: 359 NQI 361
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 24/181 (13%)
Query: 98 LGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRF 157
L G L+D+G ++ L L + + NN++S P + LT+L L N+
Sbjct: 224 LNGNQLKDIGTLAS--------LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Query: 158 TGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXX 217
+ P ++ N L P IS LKNLTYL L N +S P
Sbjct: 274 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP------- 322
Query: 218 XXXXXXXXXXXXXGNIPTSIASLA--PQLQYLKLGHNVLSGKVP-DFLGKFHSLDTLDLS 274
N + ++SLA + +L GHN +S P L + L D +
Sbjct: 323 VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 382
Query: 275 W 275
W
Sbjct: 383 W 383
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 50/253 (19%)
Query: 187 NGISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQY 246
+G+ L NLT ++ +NQL+ P N IA + P
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNN---QIADITPLANL 106
Query: 247 LKL-GHNVLSGKVPDF--LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLT 303
L G + + ++ D L +L+ L+LS N S + S LT + L+ + N +T
Sbjct: 107 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVT 164
Query: 304 DPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYF 363
D P+ N+ +E LD+S N K++ + L N +
Sbjct: 165 DLKPLANLTTLERLDISSN--------------------KVSDISVLAKLTNLES----- 199
Query: 364 YDYIDLSENEISG-GPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVF 422
+ + N+IS P+ +L D E +G++LK ++ +L + L LDL+ N +
Sbjct: 200 ---LIATNNQISDITPLGILTNLD---ELSLNGNQLK-DIGTLASLTNLTDLDLANNQIS 252
Query: 423 GKLPKAISGLDKL 435
P +SGL KL
Sbjct: 253 NLAP--LSGLTKL 263
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 122/303 (40%), Gaps = 57/303 (18%)
Query: 28 SGLSGFKSAITQ-DPSGMLSSW-KPGTDCCTWTGITCLSGDRVTSLSLNGQPEKPNSFLS 85
+GL+ F + IT DP L++ + T + I+ LSG +TSL + SF S
Sbjct: 110 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG--LTSL-------QQLSFSS 160
Query: 86 GTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLT 145
++ L + NL + D+ + + ++ L L+ + NN++S P +G LT
Sbjct: 161 NQVTD-LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT 217
Query: 146 QLEALSFSGNRF--TGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHN 203
L+ LS +GN+ G + S L NLT LDL +N
Sbjct: 218 NLDELSLNGNQLKDIGTLAS----------------------------LTNLTDLDLANN 249
Query: 204 QLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLA--PQLQYLKLGHNVLSGKVPDF 261
Q+S P N ++I+ LA L L+L N L P
Sbjct: 250 QISNLAP-------LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-- 300
Query: 262 LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSY 321
+ +L L L +N S P S+LTK+ L N ++D + N+ I L +
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH 358
Query: 322 NQF 324
NQ
Sbjct: 359 NQI 361
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 24/181 (13%)
Query: 98 LGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRF 157
L G L+D+G ++ L L + + NN++S P + LT+L L N+
Sbjct: 224 LNGNQLKDIGTLAS--------LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Query: 158 TGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXX 217
+ P ++ N L P IS LKNLTYL L N +S P
Sbjct: 274 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP------- 322
Query: 218 XXXXXXXXXXXXXGNIPTSIASLA--PQLQYLKLGHNVLSGKVP-DFLGKFHSLDTLDLS 274
N + ++SLA + +L GHN +S P L + L D +
Sbjct: 323 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 382
Query: 275 W 275
W
Sbjct: 383 W 383
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 83/213 (38%), Gaps = 45/213 (21%)
Query: 116 FISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRF--TGPIPSSISXXXXXXX 173
++ L L+ + NN++S P +G LT L+ LS +GN+ G + S
Sbjct: 193 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS---------- 240
Query: 174 XXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNI 233
L NLT LDL +NQ+S P N
Sbjct: 241 ------------------LTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGANQ 275
Query: 234 PTSIASLA--PQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTK 291
++I+ LA L L+L N L P + +L L L +N S P S+LTK
Sbjct: 276 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 331
Query: 292 IFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 324
+ L A N ++D + N+ I L +NQ
Sbjct: 332 LQRLFFANNKVSDVSSLANLTNINWLSAGHNQI 364
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 262 LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSY 321
L +L LDL+ NQ S P S LTK+ L L N +++ P+ + + +L+L+
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 295
Query: 322 NQFH 325
NQ
Sbjct: 296 NQLE 299
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 24/181 (13%)
Query: 98 LGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRF 157
L G L+D+G ++ L L + + NN++S P + LT+L L N+
Sbjct: 227 LNGNQLKDIGTLAS--------LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 276
Query: 158 TGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXX 217
+ P ++ N L P IS LKNLTYL L N +S P
Sbjct: 277 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP------- 325
Query: 218 XXXXXXXXXXXXXGNIPTSIASLA--PQLQYLKLGHNVLSGKVP-DFLGKFHSLDTLDLS 274
N + ++SLA + +L GHN +S P L + L D +
Sbjct: 326 VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 385
Query: 275 W 275
W
Sbjct: 386 W 386
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 42/216 (19%)
Query: 244 LQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLT 303
L + +N L+ P L L + ++ NQ + P +NLT + L L N +T
Sbjct: 69 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 124
Query: 304 DPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKP-AQTY 362
D P+ N+ + L+LS N S +TS L + + + KP A
Sbjct: 125 DIDPLKNLTNLNRLELSSNTISDISALSGLTS--------LQQLSFGNQVTDLKPLANLT 176
Query: 363 FYDYIDLSENEISG-----------------------GPVELLNRTDYLVEFRASGSKLK 399
+ +D+S N++S P+ +L D E +G++LK
Sbjct: 177 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLK 233
Query: 400 FNMDSLRIVKTLKVLDLSRNLVFGKLPKAISGLDKL 435
++ +L + L LDL+ N + P +SGL KL
Sbjct: 234 -DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 266
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 27/194 (13%)
Query: 233 IPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKI 292
+P I P+L L + +N L D SL L LS N+ + S + +
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSL 194
Query: 293 FNLNLAYNSL-TDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKM 351
F+ N++YN L T P+ +E LD S+N + V P+ L + +K+
Sbjct: 195 FHANVSYNLLSTLAIPI----AVEELDASHNSIN-------VVRGPVNVELTI----LKL 239
Query: 352 NLNNWKPAQTYFYDY-----IDLSENEISGGPVELLNRTDYLVEFRASGSKL-KFNMDSL 405
NN + +Y +DLS NE+ + L S ++L N+
Sbjct: 240 QHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG- 297
Query: 406 RIVKTLKVLDLSRN 419
+ + TLKVLDLS N
Sbjct: 298 QPIPTLKVLDLSHN 311
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 51 GTDCCTWTGITCLSGDRVTSLSLNGQPE--KPNSFLSGTISSSLVKVKNLGGIYLQDLGN 108
G D +TG+T L LS N Q P +F G + + G LQ+LG
Sbjct: 69 GIDAAAFTGLTLLEQ---LDLSDNAQLRVVDPTTF-RGLGHLHTLHLDRCG---LQELG- 120
Query: 109 ISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISXX 168
P GL L+Y+Y+++N L L L L GNR +
Sbjct: 121 -----PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGL 175
Query: 169 XXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLS 206
N + P+ L L L L N LS
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 27/196 (13%)
Query: 231 GNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLT 290
++P I P+L L + +N L D SL L LS N+ + S +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP 186
Query: 291 KIFNLNLAYNSL-TDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGI 349
+F+ N++YN L T P+ +E LD S+N + V P+ L + +
Sbjct: 187 SLFHANVSYNLLSTLAIPI----AVEELDASHNSIN-------VVRGPVNVELTI----L 231
Query: 350 KMNLNNWKPAQTYFYDY-----IDLSENEISGGPVELLNRTDYLVEFRASGSKL-KFNMD 403
K+ NN + +Y +DLS NE+ + L S ++L N+
Sbjct: 232 KLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290
Query: 404 SLRIVKTLKVLDLSRN 419
+ + TLKVLDLS N
Sbjct: 291 G-QPIPTLKVLDLSHN 305
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 14/176 (7%)
Query: 198 LDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKLGHNVLSGK 257
LDL HN LS + I + P L+YL L N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 258 VPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKG---- 313
+L+ L L N +F ++ ++ L L+ N ++ FPV +K
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKL 162
Query: 314 --IESLDLSYNQFH------LQQIPSWVTSSPIIFSLKL-AKCGIKMNLNNWKPAQ 360
+ LDLS N+ LQ++P+WV + + + L C + ++W+ Q
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQ 218
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 103 LQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LQ+LG P GL L+Y+Y+++N L L L L GNR +
Sbjct: 116 LQELG------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 169
Query: 163 SSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIP 210
+ N + P+ L L L L N LS A+P
Sbjct: 170 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALP 216
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 103 LQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LQ+LG P GL L+Y+Y+++N L L L L GNR +
Sbjct: 117 LQELG------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Query: 163 SSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIP 210
+ N + P+ L L L L N LS A+P
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALP 217
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 83/213 (38%), Gaps = 45/213 (21%)
Query: 116 FISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRF--TGPIPSSISXXXXXXX 173
++ L L+ + NN++S P +G LT L+ LS +GN+ G + S
Sbjct: 189 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS---------- 236
Query: 174 XXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNI 233
L NLT LDL +NQ+S P N
Sbjct: 237 ------------------LTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGANQ 271
Query: 234 PTSIASLA--PQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTK 291
++I+ LA L L+L N L P + +L L L +N S P S+LTK
Sbjct: 272 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 327
Query: 292 IFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 324
+ L + N ++D + N+ I L +NQ
Sbjct: 328 LQRLFFSNNKVSDVSSLANLTNINWLSAGHNQI 360
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 262 LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSY 321
L +L LDL+ NQ S P S LTK+ L L N +++ P+ + + +L+L+
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 291
Query: 322 NQFH 325
NQ
Sbjct: 292 NQLE 295
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 24/181 (13%)
Query: 98 LGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRF 157
L G L+D+G ++ L L + + NN++S P + LT+L L N+
Sbjct: 223 LNGNQLKDIGTLAS--------LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 272
Query: 158 TGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXX 217
+ P ++ N L P IS LKNLTYL L N +S P
Sbjct: 273 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP------- 321
Query: 218 XXXXXXXXXXXXXGNIPTSIASLA--PQLQYLKLGHNVLSGKVP-DFLGKFHSLDTLDLS 274
N + ++SLA + +L GHN +S P L + L D +
Sbjct: 322 VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 381
Query: 275 W 275
W
Sbjct: 382 W 382
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 42/216 (19%)
Query: 244 LQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLT 303
L + +N L+ P L L + ++ NQ + P +NLT + L L N +T
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 304 DPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKP-AQTY 362
D P+ N+ + L+LS N S +TS L + + + KP A
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTS--------LQQLNFGNQVTDLKPLANLT 172
Query: 363 FYDYIDLSENEISG-----------------------GPVELLNRTDYLVEFRASGSKLK 399
+ +D+S N++S P+ +L D E +G++LK
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLK 229
Query: 400 FNMDSLRIVKTLKVLDLSRNLVFGKLPKAISGLDKL 435
++ +L + L LDL+ N + P +SGL KL
Sbjct: 230 -DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 262
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 262 LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSY 321
L +L LDL+ NQ S P S LTK+ L L N +++ P+ + + +L+L+
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 296
Query: 322 NQFH 325
NQ
Sbjct: 297 NQLE 300
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 82/213 (38%), Gaps = 45/213 (21%)
Query: 116 FISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRF--TGPIPSSISXXXXXXX 173
++ L L+ + NN++S P +G LT L+ LS +GN+ G + S
Sbjct: 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS---------- 241
Query: 174 XXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNI 233
L NLT LDL +NQ+S P N
Sbjct: 242 ------------------LTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGANQ 276
Query: 234 PTSIASLA--PQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTK 291
++I+ LA L L+L N L P + +L L L +N S P S+LTK
Sbjct: 277 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 332
Query: 292 IFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 324
+ L N ++D + N+ I L +NQ
Sbjct: 333 LQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 365
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 24/181 (13%)
Query: 98 LGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRF 157
L G L+D+G ++ L L + + NN++S P + LT+L L N+
Sbjct: 228 LNGNQLKDIGTLAS--------LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277
Query: 158 TGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXX 217
+ P ++ N L P IS LKNLTYL L N +S P
Sbjct: 278 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP------- 326
Query: 218 XXXXXXXXXXXXXGNIPTSIASLA--PQLQYLKLGHNVLSGKVP-DFLGKFHSLDTLDLS 274
N + ++SLA + +L GHN +S P L + L D +
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386
Query: 275 W 275
W
Sbjct: 387 W 387
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 42/216 (19%)
Query: 244 LQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLT 303
L + +N L+ P L L + ++ NQ + P +NLT + L L N +T
Sbjct: 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125
Query: 304 DPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKP-AQTY 362
D P+ N+ + L+LS N S +TS L + + + KP A
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISDISALSGLTS--------LQQLSFGNQVTDLKPLANLT 177
Query: 363 FYDYIDLSENEISG-----------------------GPVELLNRTDYLVEFRASGSKLK 399
+ +D+S N++S P+ +L D E +G++LK
Sbjct: 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLK 234
Query: 400 FNMDSLRIVKTLKVLDLSRNLVFGKLPKAISGLDKL 435
++ +L + L LDL+ N + P +SGL KL
Sbjct: 235 -DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 262 LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSY 321
L +L LDL+ NQ S P S LTK+ L L N +++ P+ + + +L+L+
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 291
Query: 322 NQFH 325
NQ
Sbjct: 292 NQLE 295
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 82/213 (38%), Gaps = 45/213 (21%)
Query: 116 FISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRF--TGPIPSSISXXXXXXX 173
++ L L+ + NN++S P +G LT L+ LS +GN+ G + S
Sbjct: 189 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS---------- 236
Query: 174 XXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNI 233
L NLT LDL +NQ+S P N
Sbjct: 237 ------------------LTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGANQ 271
Query: 234 PTSIASLA--PQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTK 291
++I+ LA L L+L N L P + +L L L +N S P S+LTK
Sbjct: 272 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 327
Query: 292 IFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 324
+ L N ++D + N+ I L +NQ
Sbjct: 328 LQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 360
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 104/256 (40%), Gaps = 22/256 (8%)
Query: 26 DESGLSGFKSAITQDPSGMLSSWKPGTDCCTWTGITCLSGDRVTSLSLNGQPEKPNSFLS 85
D S LSG S + ++ KP + T + +S ++V+ +S+ + S ++
Sbjct: 143 DISALSGLTSLQQLNFGNQVTDLKPLANLTTLERL-DISSNKVSDISVLAKLTNLESLIA 201
Query: 86 GTISSSLVKVKNLGGIYLQDLGNISGN-FPDF--ISGLPELKYIYIENNKLSGQIPANIG 142
++ + + LG + D +++GN D ++ L L + + NN++S P +
Sbjct: 202 T--NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS 257
Query: 143 KLTQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQH 202
LT+L L N+ + P ++ N L P IS LKNLTYL L
Sbjct: 258 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 313
Query: 203 NQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLA--PQLQYLKLGHNVLSGKVP- 259
N +S P N + ++SLA + +L GHN +S P
Sbjct: 314 NNISDISP-------VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 366
Query: 260 DFLGKFHSLDTLDLSW 275
L + L D +W
Sbjct: 367 ANLTRITQLGLNDQAW 382
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 42/216 (19%)
Query: 244 LQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLT 303
L + +N L+ P L L + ++ NQ + P +NLT + L L N +T
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 304 DPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKP-AQTY 362
D P+ N+ + L+LS N S +TS L + + + KP A
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTS--------LQQLNFGNQVTDLKPLANLT 172
Query: 363 FYDYIDLSENEISG-----------------------GPVELLNRTDYLVEFRASGSKLK 399
+ +D+S N++S P+ +L D E +G++LK
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLK 229
Query: 400 FNMDSLRIVKTLKVLDLSRNLVFGKLPKAISGLDKL 435
++ +L + L LDL+ N + P +SGL KL
Sbjct: 230 -DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 262
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 2/124 (1%)
Query: 89 SSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLE 148
S + +V +L + L +L + GL L+Y+ + L IP N+ L +LE
Sbjct: 124 SYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLE 181
Query: 149 ALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGA 208
L SGNR P S + N LK+L L+L HN L
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Query: 209 IPDI 212
D+
Sbjct: 242 PHDL 245
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 115 DFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFT 158
D GL L+ +Y+ +N L+ P LT L LS + NR T
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 411 LKVLDLSRNLVFGKLPKAISGLDKLNVSFNNLCGEIPKTKFPASAFVGNECLCGPP 466
L++LD+SRN + P L L+++ N E + F N + GPP
Sbjct: 528 LEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPP 583
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 393 ASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAISGLDK---LNVSFNNLCGEIPKT 449
+ G N +K LKVL+L+ N + +A GLD LN+S+ NL GE+ +
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLLGELYSS 332
Query: 450 KF---PASAFV 457
F P A++
Sbjct: 333 NFYGLPKVAYI 343
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 267 SLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPF----PVMNVKGIESLDLSYN 322
+L LDL ++ P +F L +F L L + L+D N+K + LDLS N
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 323 Q 323
Q
Sbjct: 134 Q 134
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Query: 94 KVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFS 153
+V +L + L +L + GL L+Y+ + L IP N+ L +LE L S
Sbjct: 129 RVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELS 186
Query: 154 GNRFTGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDI 212
GNR P S + N LK+L L+L HN L D+
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 118 SGLPEL-KYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISXXXXXXXXXX 176
+G+P + +Y+ +N+++ P +LTQL L N+ T +P+ +
Sbjct: 26 TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLS 84
Query: 177 XXNFLTGAIPNG-ISQLKNLTYLDLQHNQLSGAIPDI 212
+ +IP G L++LT++ L +N A DI
Sbjct: 85 LNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDI 121
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 118 SGLPEL-KYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISXXXXXXXXXX 176
+G+P + +Y+ +N+++ P +LTQL L N+ T +P+ +
Sbjct: 26 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLS 84
Query: 177 XXNFLTGAIPNG-ISQLKNLTYLDLQHNQLSGAIPDI 212
+ +IP G LK+LT++ L +N A DI
Sbjct: 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 118 SGLPEL-KYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISXXXXXXXXXX 176
+G+P + +Y+ +N+++ P +LTQL L N+ T +P+ +
Sbjct: 34 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLS 92
Query: 177 XXNFLTGAIPNG-ISQLKNLTYLDLQHNQLSGAIPDI 212
+ +IP G LK+LT++ L +N A DI
Sbjct: 93 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 129
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 31/133 (23%)
Query: 194 NLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKLGHNV 253
N+T L+L HNQL +P + + QL L G N
Sbjct: 26 NITVLNLTHNQLR-------------------------RLPPTNFTRYSQLAILDAGFNS 60
Query: 254 LSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL----TDPFPVM 309
+S P+ L L+L N+ S ++F T + L+L NS+ ++PF
Sbjct: 61 ISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFK-- 118
Query: 310 NVKGIESLDLSYN 322
N K + LDLS+N
Sbjct: 119 NQKNLIKLDLSHN 131
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Query: 184 AIPNGISQLKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQ 243
++P GI TYLDL+ N L ++P+ ++P + +
Sbjct: 21 SVPTGIP--AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 244 LQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302
L YL L N L K L L L+ NQ F LT++ +L L N L
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 243 QLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302
+L LK+G+N ++ P L L L++ NQ S + +LTK+ LN+ N +
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQI 277
Query: 303 TDPFPVMNVKGIESLDLSYNQF 324
+D + N+ + SL L+ NQ
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQL 299
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 26/112 (23%)
Query: 192 LKNLTYLDLQHNQLSGAIPDIXXXXXXXXXXXXXXXXXXGNIPTSIASLAPQLQYLKL-G 250
L+NL YLD+ H A I ++SL + LK+ G
Sbjct: 420 LRNLIYLDISHTHTRVAF---------------------NGIFNGLSSL----EVLKMAG 454
Query: 251 HNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302
++ +PD + +L LDLS Q P +F++L+ + LN+A N L
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 27/126 (21%)
Query: 87 TISSSLVKVKNLGGIYLQ--DLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKL 144
T+SS+ + ++ L + Q +L +S F F+S L L Y+ I + L
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 145 TQLEALSFSGNRFTGPIPSSISXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQ 204
+ LE L +GN F NFL P+ ++L+NLT+LDL Q
Sbjct: 445 SSLEVLKMAGNSFQ-------------------ENFL----PDIFTELRNLTFLDLSQCQ 481
Query: 205 LSGAIP 210
L P
Sbjct: 482 LEQLSP 487
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 243 QLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302
+LQ+L L + H L L L+ N P SFS LT + NL L
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116
Query: 303 T--DPFPVMNVKGIESLDLSYNQFHLQQIPSWVT 334
+ FP+ + ++ L++++N H ++P++ +
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 108 NISGNF--PDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSI 165
NIS N DF++ L Y+ N L+ ++PA I L+ L L S NR T +P+ +
Sbjct: 238 NISANIFKYDFLTRL------YLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 166 SXXXXXXXXXXXXNFLTGAIPNGISQLKNLTYLDLQHNQLS 206
N +T +P L NL +L ++ N L
Sbjct: 290 GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 243 QLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302
+LQ+L L + H L L L+ N P SFS LT + NL L
Sbjct: 52 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 111
Query: 303 T--DPFPVMNVKGIESLDLSYNQFHLQQIPSWVT 334
+ FP+ + ++ L++++N H ++P++ +
Sbjct: 112 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 145
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 233 IPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKI 292
IPT+ L + ++L N + P + L +DLS NQ S P +F L +
Sbjct: 26 IPTN---LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 293 FNLNLAYNSLTD 304
+L L N +T+
Sbjct: 83 NSLVLYGNKITE 94
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 233 IPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKI 292
IPT+ L + ++L N + P + L +DLS NQ S P +F L +
Sbjct: 26 IPTN---LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 293 FNLNLAYNSLTD 304
+L L N +T+
Sbjct: 83 NSLVLYGNKITE 94
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 118 SGLPE-LKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISXXXXXXXXXX 176
+G+P + +E+NKL KLTQL LS S N+ +P +
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILY 82
Query: 177 XXNFLTGAIPNGI-SQLKNLTYLDLQHNQLSGAIPD 211
++PNG+ +L L L L NQL ++PD
Sbjct: 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPD 117
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 243 QLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302
+ + L LG N + D F L+ L+L+ N S P +F+NL + L L N L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 303 T-DPFPVMN-VKGIESLDLSYNQF 324
P V + + LD+S N+
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKI 116
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 117 ISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFT 158
+S LP L+ ++++NNKLS ++PA + L L+ + N T
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 271 LDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 324
L+L NQ + P NLTKI L L+ N L + + ++ I++LDL+ Q
Sbjct: 68 LELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119
>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAX|B Chain B, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAY|A Chain A, Crystal Structure Of Acc Synthase Complexed With Cofactor
Plp And Inhibitor Avg
Length = 428
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 298 AYNSLTDPF-PVMNVKGIESLDLSYNQFHLQQIPSWVTSSP 337
AY+S DPF P+ N G+ + L+ NQ L I W+ +P
Sbjct: 23 AYDS--DPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNP 61
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162
LP+L+ +Y+ NNK++ + +LT+L+ LS N+ +P
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP 171
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 117 ISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFT 158
+ GL EL+ +Y++ N+L P + +LE LS + N+ T
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 117 ISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFT 158
+ GL EL+ +Y++ N+L P + +LE LS + N+ T
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 117 ISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFT 158
+ GL EL+ +Y++ N+L P + +LE LS + N+ T
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 117 ISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFT 158
+ GL EL+ +Y++ N+L P + +LE LS + N+ T
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 244 LQYLKL-GHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYN-S 301
L+ L++ G +V S K+P+ G LD+S + ++ + L K+ +++L+YN +
Sbjct: 90 LERLRIXGKDVTSDKIPNLSGLTSLT-LLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148
Query: 302 LTDPFPVMNVKGIESLDLSYNQFH 325
+TD P+ + ++SL++ ++ H
Sbjct: 149 ITDIXPLKTLPELKSLNIQFDGVH 172
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 112 NFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSIS 166
N+P G LK + +++ +P +I +LTQLE L G +PS I+
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,538,063
Number of Sequences: 62578
Number of extensions: 554216
Number of successful extensions: 1569
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 347
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)