Query 045209
Match_columns 478
No_of_seqs 482 out of 4244
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 10:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.4E-50 5.3E-55 445.1 34.4 414 23-448 27-470 (968)
2 PLN00113 leucine-rich repeat r 100.0 1E-43 2.2E-48 392.5 29.2 389 67-466 189-611 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-35 2.4E-40 284.5 6.5 362 98-466 80-456 (873)
4 KOG4194 Membrane glycoprotein 100.0 9E-35 2E-39 278.2 4.8 358 67-435 79-444 (873)
5 KOG0444 Cytoskeletal regulator 100.0 9.1E-32 2E-36 259.5 -3.6 325 87-421 46-374 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 3.7E-31 8E-36 255.3 -5.7 360 67-443 8-375 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.1E-31 2.4E-36 246.7 -14.2 206 87-302 82-309 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 1.2E-28 2.7E-33 226.7 -7.8 347 87-448 105-544 (565)
9 PLN03210 Resistant to P. syrin 99.9 1.9E-22 4E-27 224.3 28.1 356 65-441 531-904 (1153)
10 KOG0618 Serine/threonine phosp 99.9 7.9E-26 1.7E-30 227.9 -3.1 342 88-449 13-425 (1081)
11 KOG0618 Serine/threonine phosp 99.9 3.4E-26 7.4E-31 230.5 -5.8 349 68-441 47-487 (1081)
12 PLN03210 Resistant to P. syrin 99.9 4.1E-21 8.9E-26 213.6 28.3 318 84-420 576-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 4.5E-22 9.6E-27 206.5 17.3 265 121-429 201-465 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 4.5E-21 9.8E-26 199.1 18.3 261 145-449 201-464 (788)
15 KOG4237 Extracellular matrix p 99.8 8.5E-23 1.8E-27 188.1 -2.4 363 65-440 66-498 (498)
16 PRK15370 E3 ubiquitin-protein 99.8 3.5E-20 7.6E-25 193.6 14.5 202 122-350 179-380 (754)
17 PRK15370 E3 ubiquitin-protein 99.8 9.2E-20 2E-24 190.5 12.2 265 145-444 178-446 (754)
18 KOG4237 Extracellular matrix p 99.8 4E-20 8.7E-25 170.6 -1.0 298 129-442 54-358 (498)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.4E-19 5.1E-24 173.6 -0.0 38 266-303 137-178 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-18 2.4E-23 168.9 2.0 188 90-279 17-234 (319)
21 KOG0617 Ras suppressor protein 99.7 4.8E-19 1E-23 145.6 -4.9 165 117-288 29-194 (264)
22 KOG0617 Ras suppressor protein 99.6 7.2E-18 1.6E-22 138.7 -4.3 161 141-307 29-190 (264)
23 PLN03150 hypothetical protein; 99.5 6.1E-14 1.3E-18 146.3 14.0 150 19-180 366-526 (623)
24 COG4886 Leucine-rich repeat (L 99.2 2.6E-11 5.5E-16 120.9 9.6 192 125-324 97-289 (394)
25 KOG0532 Leucine-rich repeat (L 99.2 2.9E-13 6.2E-18 131.2 -4.5 175 100-286 79-253 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 7.3E-13 1.6E-17 128.4 -4.4 193 120-322 74-270 (722)
27 COG4886 Leucine-rich repeat (L 99.2 3.3E-11 7.2E-16 120.1 7.2 198 148-355 96-295 (394)
28 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.9E-16 110.8 1.6 137 211-352 278-414 (490)
29 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.4E-16 116.7 0.8 204 144-350 120-339 (505)
30 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.5E-16 111.3 0.5 133 261-423 279-413 (490)
31 PLN03150 hypothetical protein; 99.1 4.1E-10 8.9E-15 117.8 9.9 107 171-278 420-527 (623)
32 KOG1909 Ran GTPase-activating 99.1 4.3E-11 9.4E-16 109.9 1.3 89 66-158 30-133 (382)
33 KOG3207 Beta-tubulin folding c 99.0 4.3E-11 9.2E-16 112.9 0.7 184 166-350 118-314 (505)
34 PF14580 LRR_9: Leucine-rich r 99.0 5.4E-10 1.2E-14 96.2 6.6 123 170-297 20-147 (175)
35 KOG1909 Ran GTPase-activating 99.0 4.4E-11 9.6E-16 109.8 -0.7 159 167-325 90-283 (382)
36 PF14580 LRR_9: Leucine-rich r 99.0 4.2E-10 9.1E-15 96.9 5.0 109 117-230 15-126 (175)
37 KOG4658 Apoptotic ATPase [Sign 98.9 7.1E-10 1.5E-14 118.6 5.1 108 96-204 545-653 (889)
38 KOG0531 Protein phosphatase 1, 98.9 1.5E-10 3.3E-15 115.7 -0.2 244 94-351 70-319 (414)
39 PF08263 LRRNT_2: Leucine rich 98.9 3.3E-09 7.2E-14 68.7 4.3 40 24-63 2-43 (43)
40 KOG4658 Apoptotic ATPase [Sign 98.8 1E-08 2.2E-13 109.8 8.0 129 120-252 522-652 (889)
41 KOG0531 Protein phosphatase 1, 98.8 5.9E-10 1.3E-14 111.5 -2.2 265 169-447 49-322 (414)
42 PF13855 LRR_8: Leucine rich r 98.7 5.4E-09 1.2E-13 73.9 2.8 60 121-180 1-60 (61)
43 PF13855 LRR_8: Leucine rich r 98.7 1E-08 2.2E-13 72.5 2.5 59 146-204 2-60 (61)
44 KOG2120 SCF ubiquitin ligase, 98.4 1.7E-08 3.7E-13 91.1 -4.3 156 146-301 186-349 (419)
45 KOG1859 Leucine-rich repeat pr 98.3 1.7E-08 3.7E-13 101.2 -5.1 196 144-349 83-291 (1096)
46 KOG2982 Uncharacterized conser 98.3 2.2E-07 4.8E-12 84.0 1.6 188 144-353 70-265 (418)
47 KOG2120 SCF ubiquitin ligase, 98.3 2E-08 4.3E-13 90.7 -5.2 104 219-322 187-296 (419)
48 KOG1859 Leucine-rich repeat pr 98.3 3.7E-08 8.1E-13 98.8 -4.8 175 138-324 102-291 (1096)
49 KOG2982 Uncharacterized conser 98.2 2.8E-07 6E-12 83.4 1.0 188 118-305 68-264 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.2 5.9E-07 1.3E-11 80.3 2.1 205 120-325 29-285 (388)
51 KOG4579 Leucine-rich repeat (L 98.2 8.5E-08 1.8E-12 76.8 -3.6 90 144-236 52-141 (177)
52 KOG3665 ZYG-1-like serine/thre 98.0 1.9E-06 4.1E-11 90.4 1.1 152 95-248 121-281 (699)
53 KOG4579 Leucine-rich repeat (L 98.0 6.5E-07 1.4E-11 71.8 -2.3 86 166-255 50-136 (177)
54 COG5238 RNA1 Ran GTPase-activa 97.9 4.1E-06 8.9E-11 75.0 1.0 230 66-304 30-317 (388)
55 PF12799 LRR_4: Leucine Rich r 97.8 1.4E-05 3.1E-10 51.7 2.3 35 388-422 3-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.7E-10 51.4 2.7 36 122-158 2-37 (44)
57 KOG4341 F-box protein containi 97.8 7.3E-07 1.6E-11 84.4 -5.9 133 216-348 293-437 (483)
58 PRK15386 type III secretion pr 97.7 0.00023 4.9E-09 69.3 9.6 136 117-276 48-187 (426)
59 PRK15386 type III secretion pr 97.6 0.00046 9.9E-09 67.2 11.0 138 263-420 49-188 (426)
60 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.5E-09 63.1 5.9 102 243-346 43-149 (233)
61 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.3E-09 63.3 5.3 102 195-299 44-149 (233)
62 KOG3665 ZYG-1-like serine/thre 97.4 4.5E-05 9.7E-10 80.2 1.4 107 169-278 122-232 (699)
63 KOG4341 F-box protein containi 97.4 5.1E-06 1.1E-10 78.8 -5.6 232 96-350 138-385 (483)
64 KOG2739 Leucine-rich acidic nu 97.2 0.0002 4.4E-09 64.3 2.6 62 119-182 41-104 (260)
65 PF13306 LRR_5: Leucine rich r 97.1 0.0013 2.8E-08 54.0 6.6 82 92-177 8-89 (129)
66 PF13306 LRR_5: Leucine rich r 96.9 0.0027 5.9E-08 52.1 6.7 105 116-225 7-111 (129)
67 KOG2739 Leucine-rich acidic nu 96.9 0.00071 1.5E-08 60.9 3.1 111 137-249 35-150 (260)
68 KOG2123 Uncharacterized conser 96.4 0.00011 2.3E-09 66.5 -5.4 99 121-223 19-123 (388)
69 KOG1947 Leucine rich repeat pr 96.4 0.0004 8.7E-09 71.1 -2.5 63 167-229 241-307 (482)
70 KOG2123 Uncharacterized conser 95.7 0.00067 1.4E-08 61.4 -3.9 101 144-248 18-123 (388)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.0039 8.4E-08 33.5 0.3 11 411-421 2-12 (22)
72 KOG1947 Leucine rich repeat pr 95.3 0.0028 6.1E-08 64.8 -1.5 130 168-297 187-328 (482)
73 PF00560 LRR_1: Leucine Rich R 94.1 0.019 4E-07 30.8 0.5 12 123-134 2-13 (22)
74 KOG4308 LRR-containing protein 92.3 0.0012 2.6E-08 66.6 -10.8 135 170-304 145-304 (478)
75 PF13504 LRR_7: Leucine rich r 92.2 0.072 1.6E-06 26.5 0.9 12 410-421 2-13 (17)
76 KOG4308 LRR-containing protein 92.2 0.0018 3.9E-08 65.3 -9.6 179 147-325 89-303 (478)
77 smart00370 LRR Leucine-rich re 91.6 0.13 2.7E-06 28.8 1.6 18 431-449 3-20 (26)
78 smart00369 LRR_TYP Leucine-ric 91.6 0.13 2.7E-06 28.8 1.6 18 431-449 3-20 (26)
79 KOG3864 Uncharacterized conser 88.0 0.082 1.8E-06 46.0 -1.6 33 242-274 151-184 (221)
80 smart00369 LRR_TYP Leucine-ric 87.9 0.47 1E-05 26.4 2.0 18 408-425 1-18 (26)
81 smart00370 LRR Leucine-rich re 87.9 0.47 1E-05 26.4 2.0 18 408-425 1-18 (26)
82 KOG0473 Leucine-rich repeat pr 84.3 0.021 4.5E-07 50.7 -7.2 87 117-206 38-124 (326)
83 PF13516 LRR_6: Leucine Rich r 83.1 0.32 7E-06 26.5 -0.2 18 266-283 2-19 (24)
84 KOG0473 Leucine-rich repeat pr 77.2 0.092 2E-06 46.7 -5.6 86 189-278 38-123 (326)
85 smart00365 LRR_SD22 Leucine-ri 77.1 2.2 4.7E-05 23.9 1.8 14 409-422 2-15 (26)
86 KOG3864 Uncharacterized conser 76.7 0.38 8.3E-06 42.0 -1.9 79 267-346 102-185 (221)
87 smart00364 LRR_BAC Leucine-ric 76.5 1.7 3.8E-05 24.2 1.3 17 431-448 3-19 (26)
88 KOG4242 Predicted myosin-I-bin 70.7 34 0.00074 34.3 9.3 18 219-236 216-233 (553)
89 smart00368 LRR_RI Leucine rich 67.7 4.7 0.0001 22.9 1.8 14 409-422 2-15 (28)
90 KOG4242 Predicted myosin-I-bin 67.7 16 0.00036 36.4 6.5 58 364-421 415-480 (553)
91 PF02950 Conotoxin: Conotoxin; 62.6 3.9 8.4E-05 29.7 1.0 15 1-15 1-15 (75)
92 PF03128 CXCXC: CXCXC repeat; 57.6 7.2 0.00016 18.2 1.1 11 467-477 4-14 (14)
93 KOG3763 mRNA export factor TAP 35.9 25 0.00053 35.9 2.1 63 215-279 216-283 (585)
94 smart00367 LRR_CC Leucine-rich 35.0 31 0.00067 18.9 1.6 11 121-131 2-12 (26)
95 KOG3763 mRNA export factor TAP 32.8 28 0.00061 35.5 2.0 63 192-256 217-284 (585)
96 PF13956 Ibs_toxin: Toxin Ibs, 25.8 48 0.001 16.6 1.1 12 1-12 2-13 (19)
97 TIGR00864 PCC polycystin catio 23.5 46 0.001 41.0 1.9 33 368-400 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-50 Score=445.10 Aligned_cols=414 Identities=33% Similarity=0.536 Sum_probs=268.3
Q ss_pred ChhhHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeee
Q 045209 23 HPDDESGLSGFKSAITQDPSGMLSSWKPGTDCCTWTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIY 102 (478)
Q Consensus 23 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 102 (478)
+++|+.||++||+++. +|.+.+.+|+.+.+||.|.||+|+..++|+.|++++. .+.|.+++.+..+++|++|+
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~------~i~~~~~~~~~~l~~L~~L~ 99 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGK------NISGKISSAIFRLPYIQTIN 99 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCC------CccccCChHHhCCCCCCEEE
Confidence 6789999999999984 6777788998888999999999987789999999974 46777777888888888888
Q ss_pred cCCCCCcccccCccCC-CCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccC
Q 045209 103 LQDLGNISGNFPDFIS-GLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFL 181 (478)
Q Consensus 103 l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 181 (478)
++++ .+.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 100 Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 100 LSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred CCCC-ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 8876 67777776543 777777777777777665554 3456666666666666666666666666666666666666
Q ss_pred CCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcc
Q 045209 182 TGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDF 261 (478)
Q Consensus 182 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 261 (478)
.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+. +|++|++++|.+++.+|..
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC-CCCEEECcCceeccccChh
Confidence 666666666666666666666666666666666666666666666666666666655553 6666666666666556666
Q ss_pred cCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCc--cCcCCCCEEEccCCCCCCCCCCccccCCCCc
Q 045209 262 LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPV--MNVKGIESLDLSYNQFHLQQIPSWVTSSPII 339 (478)
Q Consensus 262 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 339 (478)
++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..+. ..+++|++|++++|.++ +.+|..+..+++|
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L 334 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT-GKIPVALTSLPRL 334 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC-CcCChhHhcCCCC
Confidence 66666666666666666555555566666666666666655543332 24455555555555552 4445555555555
Q ss_pred cEEEccCCCCcccCCCCccccc-----------------------cCCcEEEccCCcccccCccccccCCCCcEEECcCC
Q 045209 340 FSLKLAKCGIKMNLNNWKPAQT-----------------------YFYDYIDLSENEISGGPVELLNRTDYLVEFRASGS 396 (478)
Q Consensus 340 ~~L~l~~n~l~~~~~~~~~~~~-----------------------~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n 396 (478)
+.|++++|.+.+.+|....... ..++.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 5555555555544443222111 12455555555555555555555666666666666
Q ss_pred cCcccC-CCccCCCCCCEEECCCCcCcccCCcc---CCCCCeeeccCCcccccCCC
Q 045209 397 KLKFNM-DSLRIVKTLKVLDLSRNLVFGKLPKA---ISGLDKLNVSFNNLCGEIPK 448 (478)
Q Consensus 397 ~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~L~~L~ls~N~l~~~ip~ 448 (478)
++++.. ..+..++.|+.|++++|++++.+|.. +.+|+.|++++|++.|.+|.
T Consensus 415 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 665433 34556666666666666666666643 34566677777777666665
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-43 Score=392.53 Aligned_cols=389 Identities=34% Similarity=0.512 Sum_probs=257.5
Q ss_pred CEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCC
Q 045209 67 RVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQ 146 (478)
Q Consensus 67 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~ 146 (478)
+++.|+++++ .+.+.+|..+.++++|++|+++++ .+.+.+|..+.++++|++|++++|.+.+.+|..+.++++
T Consensus 189 ~L~~L~L~~n------~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 189 SLEFLTLASN------QLVGQIPRELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred CCCeeeccCC------CCcCcCChHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 5667777653 455666666666666666666665 556666666666666666666666666666666666666
Q ss_pred CCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEccc
Q 045209 147 LEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSF 226 (478)
Q Consensus 147 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 226 (478)
|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|+.|++++
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 66666666666666666666666666666666666655565556666666666666666555555555555555566555
Q ss_pred CcCccccchHHHhccccCcEEEccCccCCCC------------------------CCcccCCCCCCCEEeccCCcCCccc
Q 045209 227 NKFSGNIPTSIASLAPQLQYLKLGHNVLSGK------------------------VPDFLGKFHSLDTLDLSWNQFSGTL 282 (478)
Q Consensus 227 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~------------------------~~~~l~~l~~L~~L~L~~n~l~~~~ 282 (478)
|.+.+.+|..+.... +|+.|++++|.+++. +|..+..+++|+.|++++|.+++.+
T Consensus 342 n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 342 NKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 555555555544442 555555555555444 4444445555555555555555555
Q ss_pred hhhhcCCCCCCEEeccCCcCCCCCCc--cCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCcccc
Q 045209 283 PKSFSNLTKIFNLNLAYNSLTDPFPV--MNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQ 360 (478)
Q Consensus 283 ~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 360 (478)
|..+..++.|+.|++++|.+++..+. ..+++|+.|++++|++. +.+|..+ ..++|+.|++++|++.+.+|......
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF-GGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee-eecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 55555555555555555555543332 24556666666666653 4455433 34567777777777776666543322
Q ss_pred ccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccC-CCccCCCCCCEEECCCCcCcccCCccC---CCCCeee
Q 045209 361 TYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM-DSLRIVKTLKVLDLSRNLVFGKLPKAI---SGLDKLN 436 (478)
Q Consensus 361 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~L~~L~ 436 (478)
. .|+.|++++|.+.+.+|..+..+++|++|++++|++++.+ ..+..+++|+.|||++|++++.+|..+ .+|+.|+
T Consensus 499 ~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 499 S-ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred h-ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 2 3688888888888888888888889999999999998755 567888999999999999999999775 4688999
Q ss_pred ccCCcccccCCCC----CCCCCcccCCCCCCCCC
Q 045209 437 VSFNNLCGEIPKT----KFPASAFVGNECLCGPP 466 (478)
Q Consensus 437 ls~N~l~~~ip~~----~~~~~~~~~n~~lc~~~ 466 (478)
+++|++.|.+|.. .+.+.++.||+.+|+..
T Consensus 578 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999975 56778899999999865
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-35 Score=284.45 Aligned_cols=362 Identities=23% Similarity=0.272 Sum_probs=272.4
Q ss_pred CCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEee
Q 045209 98 LGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLG 177 (478)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 177 (478)
-+.|+++++ .+....+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+.+..+.+..++.|+.|||+
T Consensus 80 t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeecccc-ccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 356888887 777777778888888888888888887 777766666778888888888887777788888888888888
Q ss_pred cccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCC
Q 045209 178 QNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGK 257 (478)
Q Consensus 178 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 257 (478)
.|.|+..-...|..-.++++|+|++|.++..-...|..+.+|.+|.|+.|+++ .+|...++-.|+|+.|+|..|.+.-.
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeee
Confidence 88888555556766678888888888888777778888888888888888888 67776666446888888888887633
Q ss_pred CCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCC--CccCcCCCCEEEccCCCCCCCCCCccccC
Q 045209 258 VPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPF--PVMNVKGIESLDLSYNQFHLQQIPSWVTS 335 (478)
Q Consensus 258 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 335 (478)
--..|..+++|+.|.+..|.+...-...|..+.++++|+|+.|+++... ....+..|+.|++++|.|. ..-++.+..
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-eeecchhhh
Confidence 2355778888888888888887666677888888888888888887533 3347788888888888884 333455677
Q ss_pred CCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccC----CCccCCCCC
Q 045209 336 SPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM----DSLRIVKTL 411 (478)
Q Consensus 336 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~----~~~~~l~~L 411 (478)
+++|+.|+|++|+++..-+..+.. ...|++|.|++|.+.-.-...|..+.+|++|||++|.+...+ ..|..+++|
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~-L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRV-LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred cccceeEeccccccccCChhHHHH-HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 788888888888888444333222 223688888888888887788888888888888888887654 357778888
Q ss_pred CEEECCCCcCcccCC-cc---CCCCCeeeccCCcccccCCCCCCCC-----CcccCCCCCCCCC
Q 045209 412 KVLDLSRNLVFGKLP-KA---ISGLDKLNVSFNNLCGEIPKTKFPA-----SAFVGNECLCGPP 466 (478)
Q Consensus 412 ~~L~Ls~N~l~~~~p-~~---l~~L~~L~ls~N~l~~~ip~~~~~~-----~~~~~n~~lc~~~ 466 (478)
+.|+|.+|+| ..|| .+ +.+|++|||.+|.|.. |....|.. ..+....++|.+.
T Consensus 395 rkL~l~gNql-k~I~krAfsgl~~LE~LdL~~NaiaS-Iq~nAFe~m~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 395 RKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAIAS-IQPNAFEPMELKELVMNSSSFLCDCQ 456 (873)
T ss_pred hheeecCcee-eecchhhhccCcccceecCCCCccee-ecccccccchhhhhhhcccceEEecc
Confidence 8888888888 4455 33 4567888888888874 44344433 3344555566543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9e-35 Score=278.18 Aligned_cols=358 Identities=22% Similarity=0.216 Sum_probs=301.2
Q ss_pred CEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCC
Q 045209 67 RVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQ 146 (478)
Q Consensus 67 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~ 146 (478)
.+..|+++. |.++..-+..|.++++|+.+++..+ .-..+|.......+|+.|+|.+|.|+..-.+.+..++.
T Consensus 79 ~t~~Ldlsn------Nkl~~id~~~f~nl~nLq~v~l~~N--~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 79 QTQTLDLSN------NKLSHIDFEFFYNLPNLQEVNLNKN--ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred ceeeeeccc------cccccCcHHHHhcCCcceeeeeccc--hhhhcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 455566654 5577777778899999999999884 55678887777788999999999999777788999999
Q ss_pred CCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEccc
Q 045209 147 LEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSF 226 (478)
Q Consensus 147 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 226 (478)
|+.|||+.|.|+.+.-..|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|.++...+..|.++++|+.|+|..
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 99999999999966556677778999999999999988888999999999999999999988888999999999999999
Q ss_pred CcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCC
Q 045209 227 NKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPF 306 (478)
Q Consensus 227 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 306 (478)
|+|. .+....+...++|+.|.|..|.+.......|..+.++++|+|+.|+++..-..++.+++.|+.|+++.|.+....
T Consensus 231 N~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 231 NRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 9996 442333344469999999999998777788889999999999999999777788999999999999999998643
Q ss_pred C--ccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCc---cc
Q 045209 307 P--VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPV---EL 381 (478)
Q Consensus 307 ~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~ 381 (478)
. ....++|++|+|++|+++ .--+..+..+..|++|.|++|.++. +....+....+|+.|||++|.++..+. ..
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred cchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 3 347889999999999994 4445667888999999999999984 333333333348999999999987764 46
Q ss_pred cccCCCCcEEECcCCcCcccC-CCccCCCCCCEEECCCCcCcccCCccCCC--CCee
Q 045209 382 LNRTDYLVEFRASGSKLKFNM-DSLRIVKTLKVLDLSRNLVFGKLPKAISG--LDKL 435 (478)
Q Consensus 382 l~~l~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--L~~L 435 (478)
|.++++|+.|++.||+++..+ .+|..+++|++|||.+|.|-.+-|++|.. |+.|
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~L 444 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKEL 444 (873)
T ss_pred hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhh
Confidence 788999999999999999877 68999999999999999998888888864 4444
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=9.1e-32 Score=259.48 Aligned_cols=325 Identities=23% Similarity=0.318 Sum_probs=240.7
Q ss_pred ecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCC-CCCCcccCCCCCCCEEEeecCcCCCCCchhh
Q 045209 87 TISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLS-GQIPANIGKLTQLEALSFSGNRFTGPIPSSI 165 (478)
Q Consensus 87 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 165 (478)
.+|+.++.+.+|++|.+.++ .+. .+...+..++.||.+.+..|++. .-+|..+..+..|..|+|++|+++ ..|..+
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN-~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L 122 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHN-QLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL 122 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhh-hhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh
Confidence 46667777777777777665 332 23344666777777777777765 235666777777777777777777 567777
Q ss_pred cCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCc
Q 045209 166 SQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQ 245 (478)
Q Consensus 166 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 245 (478)
...+++-+|+|++|+|..+...-+.+++.|-.|++++|.+. .+|..+..+..|++|+|++|.+...--..+..+. +|+
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt-sL~ 200 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT-SLS 200 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch-hhh
Confidence 77777777777777777433344567777777777777776 4555566777777777777766432222222332 666
Q ss_pred EEEccCccCC-CCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCc-cCcCCCCEEEccCCC
Q 045209 246 YLKLGHNVLS-GKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPV-MNVKGIESLDLSYNQ 323 (478)
Q Consensus 246 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~l~~n~ 323 (478)
.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+..+++|+.|+|++|+++..... ..-.+|++|+++.|+
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch
Confidence 7777765433 357888889999999999999998 8899999999999999999999864332 345689999999999
Q ss_pred CCCCCCCccccCCCCccEEEccCCCCcc-cCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccC
Q 045209 324 FHLQQIPSWVTSSPIIFSLKLAKCGIKM-NLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM 402 (478)
Q Consensus 324 l~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 402 (478)
+ ..+|..+..++.|+.|.+.+|+++- -+|+...... .|+++..++|.+. .+|+.++.|..|+.|.|++|++-..+
T Consensus 280 L--t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~-~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 280 L--TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI-QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred h--ccchHHHhhhHHHHHHHhccCcccccCCccchhhhh-hhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeech
Confidence 8 6799999999999999999999873 3455433322 2678888888775 57788999999999999999999899
Q ss_pred CCccCCCCCCEEECCCCcC
Q 045209 403 DSLRIVKTLKVLDLSRNLV 421 (478)
Q Consensus 403 ~~~~~l~~L~~L~Ls~N~l 421 (478)
+.+.-++.|+.||+..|.-
T Consensus 356 eaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhhhhcCCcceeeccCCcC
Confidence 9999999999999999964
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=3.7e-31 Score=255.29 Aligned_cols=360 Identities=24% Similarity=0.314 Sum_probs=297.9
Q ss_pred CEEEEEcCCCCCCCCCcce-eecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCC
Q 045209 67 RVTSLSLNGQPEKPNSFLS-GTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLT 145 (478)
Q Consensus 67 ~v~~l~l~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~ 145 (478)
-|+.+|++|+ .++ +..|.....++.++-|.|... -...+|+.++.+.+|++|.+++|++. .+-..+..+|
T Consensus 8 FVrGvDfsgN------DFsg~~FP~~v~qMt~~~WLkLnrt--~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp 78 (1255)
T KOG0444|consen 8 FVRGVDFSGN------DFSGDRFPHDVEQMTQMTWLKLNRT--KLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLP 78 (1255)
T ss_pred eeecccccCC------cCCCCcCchhHHHhhheeEEEechh--hhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccch
Confidence 5888999985 465 678889999999999988763 34568999999999999999999987 4556688899
Q ss_pred CCCEEEeecCcCCC-CCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEc
Q 045209 146 QLEALSFSGNRFTG-PIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTL 224 (478)
Q Consensus 146 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 224 (478)
.|+.+++..|++.. -+|..+..+..|+.|||++|++. .+|..+..-+++..|++++|++..+.-..|.+++.|-.|||
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence 99999999998863 46788889999999999999998 88999999999999999999998665567788999999999
Q ss_pred ccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCC-ccchhhhcCCCCCCEEeccCCcCC
Q 045209 225 SFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFS-GTLPKSFSNLTKIFNLNLAYNSLT 303 (478)
Q Consensus 225 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~ 303 (478)
++|++. .+|+.+..+. .|++|.|++|.+...-...+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+.
T Consensus 158 S~NrLe-~LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 158 SNNRLE-MLPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred ccchhh-hcCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 999998 8888888886 9999999999887544455667888999999987644 357888999999999999999997
Q ss_pred CCCC-ccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccc-cCccc
Q 045209 304 DPFP-VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISG-GPVEL 381 (478)
Q Consensus 304 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~ 381 (478)
-.+. .-.+++|+.|++++|.+ +.+.-....-.+|++|+++.|+++ .+|......+. |+.|.+.+|+++- -+|..
T Consensus 236 ~vPecly~l~~LrrLNLS~N~i--teL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k-L~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKI--TELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK-LTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred cchHHHhhhhhhheeccCcCce--eeeeccHHHHhhhhhhccccchhc-cchHHHhhhHH-HHHHHhccCcccccCCccc
Confidence 6443 33778999999999998 445544555678999999999998 56655443332 6888888887763 36788
Q ss_pred cccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCcc---CCCCCeeeccCCccc
Q 045209 382 LNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKA---ISGLDKLNVSFNNLC 443 (478)
Q Consensus 382 l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~L~~L~ls~N~l~ 443 (478)
++.+..|+++..++|.+.-.+..+..+..|+.|.|++|++. .+|+. ++.|+.||+..|.=-
T Consensus 312 IGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 89999999999999999988888999999999999999984 46665 468899999998654
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1.1e-31 Score=246.66 Aligned_cols=206 Identities=29% Similarity=0.435 Sum_probs=121.5
Q ss_pred ecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhc
Q 045209 87 TISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSIS 166 (478)
Q Consensus 87 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 166 (478)
.+|++++.+..++.++.+.+ -...+|+.+..+.+|+.++.++|.+. .+|+.++.+-.|+.++..+|+++ ..|.++.
T Consensus 82 ~lp~aig~l~~l~~l~vs~n--~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~ 157 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHN--KLSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMV 157 (565)
T ss_pred hCCHHHHHHHHHHHhhcccc--hHhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHH
Confidence 45566666666666666553 22345566666666666666666665 45555555555666655555555 3444444
Q ss_pred CCCCCCEEEeecccCCC----------------------CCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEc
Q 045209 167 QLTQLTQLKLGQNFLTG----------------------AIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTL 224 (478)
Q Consensus 167 ~l~~L~~L~L~~n~l~~----------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 224 (478)
.+.+|..+++.+|++.. .+|+.++.+.+|+.|++..|++. ..| .|.++..|++|.+
T Consensus 158 ~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHV 235 (565)
T ss_pred HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHh
Confidence 44444444444444431 44445555555555555555554 233 4455555555555
Q ss_pred ccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcC
Q 045209 225 SFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302 (478)
Q Consensus 225 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 302 (478)
+.|.+. .+|+...+..+++..||+++|+++ ..|+.+..+++|+.||+++|.++ ..|.+++++ +|+.|-+.+|.+
T Consensus 236 g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 236 GENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 555554 555555544457777777777777 56777777777777777777776 456677777 777777777754
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.2e-28 Score=226.71 Aligned_cols=347 Identities=22% Similarity=0.281 Sum_probs=246.9
Q ss_pred ecccccccCCCCCeeecCCCCCcc----------------------cccCccCCCCCCCCEEEccCCCCCCCCCcccCCC
Q 045209 87 TISSSLVKVKNLGGIYLQDLGNIS----------------------GNFPDFISGLPELKYIYIENNKLSGQIPANIGKL 144 (478)
Q Consensus 87 ~~~~~l~~l~~L~~L~l~~~~~~~----------------------~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l 144 (478)
.+|+.+..+.+|++++.+.+ .+. ...|+.+..+.+|..+++.+|+++ ..|+..-++
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m 182 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAM 182 (565)
T ss_pred hccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHH
Confidence 46666667777777766654 221 234444555555555555666555 233333336
Q ss_pred CCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEc
Q 045209 145 TQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTL 224 (478)
Q Consensus 145 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 224 (478)
+.|++++...|-++ .+|..++.+.+|.-|++..|++. .+| +|.++..|.+++++.|++.....+....++++..||+
T Consensus 183 ~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeec
Confidence 77777777777776 67888999999999999999998 667 7999999999999999998444445568999999999
Q ss_pred ccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCcc-----------chh---------
Q 045209 225 SFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGT-----------LPK--------- 284 (478)
Q Consensus 225 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------~~~--------- 284 (478)
..|+++ ++|..+..+. +|+.||+++|.++ ..|..++++ +|+.|.+.+|.+... +-+
T Consensus 260 RdNklk-e~Pde~clLr-sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLR-SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred cccccc-cCchHHHHhh-hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 999998 8999999885 8999999999999 678889999 999999999987410 000
Q ss_pred ---------------------hhcCCCCCCEEeccCCcCCCCCCcc----CcCCCCEEEccCCCCC--------------
Q 045209 285 ---------------------SFSNLTKIFNLNLAYNSLTDPFPVM----NVKGIESLDLSYNQFH-------------- 325 (478)
Q Consensus 285 ---------------------~l~~l~~L~~L~L~~n~l~~~~~~~----~~~~L~~L~l~~n~l~-------------- 325 (478)
......+.+.|++++-.++..+... .-.-....+++.|++.
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 0011223445555555444322111 1111334444444431
Q ss_pred --------CCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCc
Q 045209 326 --------LQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSK 397 (478)
Q Consensus 326 --------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~ 397 (478)
.+.+|..++.+++|..|++++|-+. .+|........ |+.||+|.|++.. .|..+.....++.+-.++|+
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~-Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR-LQTLNLSFNRFRM-LPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhh-hheeccccccccc-chHHHhhHHHHHHHHhcccc
Confidence 1455667788899999999999887 55554443333 7999999998775 45666667778888888899
Q ss_pred CcccCCC-ccCCCCCCEEECCCCcCcccCCccC---CCCCeeeccCCcccccCCC
Q 045209 398 LKFNMDS-LRIVKTLKVLDLSRNLVFGKLPKAI---SGLDKLNVSFNNLCGEIPK 448 (478)
Q Consensus 398 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l---~~L~~L~ls~N~l~~~ip~ 448 (478)
+....+. +.++++|..|||.+|.+ ..+|..+ .+|++|++++|+|. .|.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccC--CCH
Confidence 9877654 88899999999999999 5566655 56889999999997 553
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.9e-22 Score=224.26 Aligned_cols=356 Identities=19% Similarity=0.174 Sum_probs=268.7
Q ss_pred CCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCC-----CcccccCccCCCCC-CCCEEEccCCCCCCCCC
Q 045209 65 GDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLG-----NISGNFPDFISGLP-ELKYIYIENNKLSGQIP 138 (478)
Q Consensus 65 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----~~~~~~~~~l~~l~-~L~~L~Ls~n~~~~~~~ 138 (478)
+.+|+.|.+.-... .-...-+.+|..+++|+.|.+.... .....+|+.+..++ +|+.|.+.++.+. .+|
T Consensus 531 ~~~v~~i~l~~~~~----~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP 605 (1153)
T PLN03210 531 TKKVLGITLDIDEI----DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMP 605 (1153)
T ss_pred cceeeEEEeccCcc----ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCC
Confidence 35677776643210 0011123467889999999886531 23345677777765 6999999999887 677
Q ss_pred cccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCC
Q 045209 139 ANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKK 218 (478)
Q Consensus 139 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 218 (478)
..+ ...+|++|+++++.+. .++..+..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++
T Consensus 606 ~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 606 SNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred CcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCC
Confidence 776 5789999999999998 577788899999999999886555666 4888999999999998877788999999999
Q ss_pred CcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEecc
Q 045209 219 LLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLA 298 (478)
Q Consensus 219 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 298 (478)
|+.|++++|.....+|..+ .+ ++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|++|++.
T Consensus 683 L~~L~L~~c~~L~~Lp~~i-~l-~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~ 755 (1153)
T PLN03210 683 LEDLDMSRCENLEILPTGI-NL-KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILC 755 (1153)
T ss_pred CCEEeCCCCCCcCccCCcC-CC-CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccccccccccc
Confidence 9999999976555777655 44 49999999999766566643 468999999999987 566554 57888888887
Q ss_pred CCcCCC-------CC--CccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEc
Q 045209 299 YNSLTD-------PF--PVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDL 369 (478)
Q Consensus 299 ~n~l~~-------~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L 369 (478)
++.... .. ....+++|++|++++|.. ...+|..+..+++|+.|++++|...+.+|.... ...|+.|++
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~-l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~--L~sL~~L~L 832 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS-LVELPSSIQNLHKLEHLEIENCINLETLPTGIN--LESLESLDL 832 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCC-ccccChhhhCCCCCCEEECCCCCCcCeeCCCCC--ccccCEEEC
Confidence 743211 11 122457899999999987 478999999999999999999876667776542 234799999
Q ss_pred cCCcccccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCcc---CCCCCeeeccCCc
Q 045209 370 SENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKA---ISGLDKLNVSFNN 441 (478)
Q Consensus 370 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~L~~L~ls~N~ 441 (478)
++|......|.. ..+|++|++++|.++..+..+..+++|+.|++++|.-...+|.. +.+|+.+++++|.
T Consensus 833 s~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 833 SGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 998655544443 36799999999999988888889999999999996433446544 4567778888874
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=7.9e-26 Score=227.88 Aligned_cols=342 Identities=27% Similarity=0.342 Sum_probs=201.7
Q ss_pred cccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcC
Q 045209 88 ISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQ 167 (478)
Q Consensus 88 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 167 (478)
+|..+..-..+++|+++.+ .+.....+++.+.-+|+.|++++|.+. ..|..+..+++|+.|+++.|.|. ..|.+..+
T Consensus 13 ip~~i~~~~~~~~ln~~~N-~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~ 89 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRN-SLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN 89 (1081)
T ss_pred cchhhccHHHHHhhhcccc-ccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhh
Confidence 3444444444555555554 222211233334444666666666655 55556666666666666666665 44555566
Q ss_pred CCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCC-------------------cEEEcccCc
Q 045209 168 LTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKL-------------------LFLTLSFNK 228 (478)
Q Consensus 168 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-------------------~~L~L~~n~ 228 (478)
+.+|++++|.+|.+. ..|.++..+++|+.|++++|.+. .+|..+..++.+ +.+++..|.
T Consensus 90 ~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~ 167 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNV 167 (1081)
T ss_pred hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhh
Confidence 666666666666555 55666666666666666666654 344444444444 444444444
Q ss_pred CccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCc
Q 045209 229 FSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPV 308 (478)
Q Consensus 229 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 308 (478)
+.+.++..+..+. . .|+|++|.+. . ..+..+..|+.|....|+++... -..++|+.|+.++|.++.....
T Consensus 168 l~~~~~~~i~~l~-~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~ 237 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLT-H--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH 237 (1081)
T ss_pred cccchhcchhhhh-e--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc
Confidence 4444444443332 1 3666666554 1 22345556666666666554221 1236778888888888765555
Q ss_pred cCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccc----------------------cccCCcE
Q 045209 309 MNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPA----------------------QTYFYDY 366 (478)
Q Consensus 309 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------~~~~L~~ 366 (478)
....+|++++++.|++ ..+|.|+..+++|+.+...+|.++ .+|..... ....|+.
T Consensus 238 p~p~nl~~~dis~n~l--~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNL--SNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred cccccceeeecchhhh--hcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeee
Confidence 5677899999999998 678899999999999998888874 22211110 1112567
Q ss_pred EEccCCcccccCccccc-------------------------cCCCCcEEECcCCcCcccC-CCccCCCCCCEEECCCCc
Q 045209 367 IDLSENEISGGPVELLN-------------------------RTDYLVEFRASGSKLKFNM-DSLRIVKTLKVLDLSRNL 420 (478)
Q Consensus 367 L~Ls~n~l~~~~~~~l~-------------------------~l~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L~Ls~N~ 420 (478)
|||..|+|...++..+. ..+.|+.|.+.+|+++... +.+.+..+|+.|+|++|+
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 77777777665433221 1223556666666666433 556677888888888888
Q ss_pred CcccCCcc----CCCCCeeeccCCcccccCCCC
Q 045209 421 VFGKLPKA----ISGLDKLNVSFNNLCGEIPKT 449 (478)
Q Consensus 421 l~~~~p~~----l~~L~~L~ls~N~l~~~ip~~ 449 (478)
+ +.+|.. +..|+.|+||+|+++ .+|..
T Consensus 395 L-~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 395 L-NSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred c-ccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 8 556654 345777888888886 67754
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=3.4e-26 Score=230.50 Aligned_cols=349 Identities=30% Similarity=0.414 Sum_probs=199.3
Q ss_pred EEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCC
Q 045209 68 VTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQL 147 (478)
Q Consensus 68 v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L 147 (478)
..+|+++.. ..+..|..+..+.+|+.|+++.+ ....+|....++.+|++|.|.+|.+. ..|..+..+.+|
T Consensus 47 L~~l~lsnn-------~~~~fp~~it~l~~L~~ln~s~n--~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl 116 (1081)
T KOG0618|consen 47 LKSLDLSNN-------QISSFPIQITLLSHLRQLNLSRN--YIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNL 116 (1081)
T ss_pred eEEeecccc-------ccccCCchhhhHHHHhhcccchh--hHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcc
Confidence 677888753 55667777778888888888774 44556677778888888888888776 677788888888
Q ss_pred CEEEeecCcCCCCCchhhcCCCCC-------------------CEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCC
Q 045209 148 EALSFSGNRFTGPIPSSISQLTQL-------------------TQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGA 208 (478)
Q Consensus 148 ~~L~L~~n~i~~~~~~~~~~l~~L-------------------~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 208 (478)
++|+++.|.+. .+|.-+..+..+ +.+++..|.+.+.++..+..++. .|++.+|.+...
T Consensus 117 ~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~ 193 (1081)
T KOG0618|consen 117 QYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL 193 (1081)
T ss_pred cccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh
Confidence 88888888876 445444444333 44444444444445544444444 577777766511
Q ss_pred CchhhhCCC--------------------CCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCC
Q 045209 209 IPDIFSSLK--------------------KLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSL 268 (478)
Q Consensus 209 ~~~~l~~l~--------------------~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 268 (478)
.+..+. +|+.|+.+.|.++ ..... + ...+|+++++++|.++ .+|+++..+.+|
T Consensus 194 ---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-~~~~~-p-~p~nl~~~dis~n~l~-~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 194 ---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT-TLDVH-P-VPLNLQYLDISHNNLS-NLPEWIGACANL 266 (1081)
T ss_pred ---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcce-eeccc-c-ccccceeeecchhhhh-cchHHHHhcccc
Confidence 122222 3333333333333 11000 0 1125556666666655 344566666666
Q ss_pred CEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCcc-CcCCCCEEEccCCCCCCCCCCcccc-------------
Q 045209 269 DTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVM-NVKGIESLDLSYNQFHLQQIPSWVT------------- 334 (478)
Q Consensus 269 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~------------- 334 (478)
+.+....|+++ .+|..+....+|+.|.+..|.+....++. ..++|++|++..|++ ..+|..+.
T Consensus 267 e~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L--~~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 267 EALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL--PSLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred eEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc--cccchHHHhhhhHHHHHHhhh
Confidence 66666666654 44444444445555555555554433333 355666666666665 33332110
Q ss_pred -------------CCCCccEEEccCCCCcccC-CCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcc
Q 045209 335 -------------SSPIIFSLKLAKCGIKMNL-NNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKF 400 (478)
Q Consensus 335 -------------~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 400 (478)
..+.|+.|.+.+|.++... |..... .+|+.|+|++|++...+...+.++..|++|+||||+++.
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~--~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF--KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT 421 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccc--cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh
Confidence 1223455555555555332 222111 235777777777777666666777777777777777664
Q ss_pred cCC----------------------CccCCCCCCEEECCCCcCccc-CCccC--CCCCeeeccCCc
Q 045209 401 NMD----------------------SLRIVKTLKVLDLSRNLVFGK-LPKAI--SGLDKLNVSFNN 441 (478)
Q Consensus 401 ~~~----------------------~~~~l~~L~~L~Ls~N~l~~~-~p~~l--~~L~~L~ls~N~ 441 (478)
++. .+..+++|+.+|+|.|+++.. +|... ++|++||+++|.
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 432 344566777777777776543 33333 367777777775
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=4.1e-21 Score=213.58 Aligned_cols=318 Identities=19% Similarity=0.220 Sum_probs=248.2
Q ss_pred ceeecccccccC-CCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCc
Q 045209 84 LSGTISSSLVKV-KNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP 162 (478)
Q Consensus 84 ~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 162 (478)
....+|..+..+ .+|+.|.+.++ ....+|..+ ...+|++|+++++.+. .++..+..+++|++|+++++.....+|
T Consensus 576 ~~~~lp~~~~~lp~~Lr~L~~~~~--~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 576 VRWHLPEGFDYLPPKLRLLRWDKY--PLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred ceeecCcchhhcCcccEEEEecCC--CCCCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC
Confidence 445667777766 46999999874 345667666 5789999999999987 678888899999999999876544666
Q ss_pred hhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccc
Q 045209 163 SSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAP 242 (478)
Q Consensus 163 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 242 (478)
. +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.....+|.. ..
T Consensus 652 ~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~ 725 (1153)
T PLN03210 652 D-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----ST 725 (1153)
T ss_pred c-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cC
Confidence 4 8889999999999988777899999999999999999987666677655 7899999999998765455532 34
Q ss_pred cCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCC-------ccchhhhcCCCCCCEEeccCCcCCCCCC--ccCcCC
Q 045209 243 QLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFS-------GTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKG 313 (478)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-------~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~ 313 (478)
+|++|++++|.++ .+|..+ .+++|+.|++.++... ...+......++|+.|++++|......| ...+++
T Consensus 726 nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 726 NISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred CcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 8999999999987 566654 5788888888764321 1122223345789999999997655444 347889
Q ss_pred CCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEEC
Q 045209 314 IESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRA 393 (478)
Q Consensus 314 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 393 (478)
|+.|++++|.. ...+|..+ .+++|+.|++++|.....+|... .++++|++++|.++. +|..+..+++|+.|++
T Consensus 804 L~~L~Ls~C~~-L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~----~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 804 LEHLEIENCIN-LETLPTGI-NLESLESLDLSGCSRLRTFPDIS----TNISDLNLSRTGIEE-VPWWIEKFSNLSFLDM 876 (1153)
T ss_pred CCEEECCCCCC-cCeeCCCC-CccccCEEECCCCCccccccccc----cccCEeECCCCCCcc-ChHHHhcCCCCCEEEC
Confidence 99999999865 36788765 68999999999987665666532 247999999999985 5667889999999999
Q ss_pred cC-CcCcccCCCccCCCCCCEEECCCCc
Q 045209 394 SG-SKLKFNMDSLRIVKTLKVLDLSRNL 420 (478)
Q Consensus 394 s~-n~l~~~~~~~~~l~~L~~L~Ls~N~ 420 (478)
++ ++++..+..+..+++|+.+++++|.
T Consensus 877 ~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 877 NGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCcCccCcccccccCCCeeecCCCc
Confidence 98 5677777777788999999999984
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=4.5e-22 Score=206.55 Aligned_cols=265 Identities=20% Similarity=0.219 Sum_probs=191.4
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEc
Q 045209 121 PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDL 200 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 200 (478)
..-..|+++++.++ .+|..+. ++|+.|++++|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 45677899999888 6777664 478899999998884 554 2578899999999888 45542 467888899
Q ss_pred cCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCc
Q 045209 201 QHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSG 280 (478)
Q Consensus 201 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 280 (478)
++|.+. .+|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|.+++ +|.. ...|+.|++++|+++
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~- 335 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT- 335 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-ccccc----ccccceeECCCCcccc-CCCC---cccccccccccCccc-
Confidence 888887 34442 256888888888887 55542 2588899998888884 4432 246778888888887
Q ss_pred cchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCcccc
Q 045209 281 TLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQ 360 (478)
Q Consensus 281 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 360 (478)
.+|.. ..+|+.|++++|++++.+. ...+|+.|++++|.+ ..+|.. ..+|+.|++++|.+++ +|...
T Consensus 336 ~LP~l---p~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~N~L--~~LP~l---~~~L~~LdLs~N~Lt~-LP~l~--- 401 (788)
T PRK15387 336 SLPTL---PSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRL--TSLPAL---PSGLKELIVSGNRLTS-LPVLP--- 401 (788)
T ss_pred ccccc---ccccceEecCCCccCCCCC--CCcccceehhhcccc--ccCccc---ccccceEEecCCcccC-CCCcc---
Confidence 35532 2478888888888887443 346788888888887 346653 2568888888888874 44332
Q ss_pred ccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCccC
Q 045209 361 TYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAI 429 (478)
Q Consensus 361 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 429 (478)
..|+.|++++|.+++. |.. ..+|+.|++++|+|+..+..+..+++|+.|+|++|++++.+|..+
T Consensus 402 -s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 -SELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -cCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2368888888888764 332 246777888888888777777778888888888888888777665
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=4.5e-21 Score=199.11 Aligned_cols=261 Identities=25% Similarity=0.297 Sum_probs=206.3
Q ss_pred CCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEc
Q 045209 145 TQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTL 224 (478)
Q Consensus 145 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 224 (478)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++. +|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 45678999999999 5777665 48999999999998 4664 35899999999999984 4542 468999999
Q ss_pred ccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCC
Q 045209 225 SFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTD 304 (478)
Q Consensus 225 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 304 (478)
++|.++ .+|. ....|+.|++++|.++ .+|. .+++|+.|++++|++++ +|.. ...|+.|++++|.+++
T Consensus 270 s~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 270 FSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS 336 (788)
T ss_pred cCCchh-hhhh----chhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence 999987 4554 2248999999999998 4554 34789999999999984 4542 2468889999999987
Q ss_pred CCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCcccccc
Q 045209 305 PFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNR 384 (478)
Q Consensus 305 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 384 (478)
.+. .+.+|++|++++|++ ..+|.. .++|+.|++++|.+.. +|... ..|+.|++++|++++.+. .
T Consensus 337 LP~--lp~~Lq~LdLS~N~L--s~LP~l---p~~L~~L~Ls~N~L~~-LP~l~----~~L~~LdLs~N~Lt~LP~-l--- 400 (788)
T PRK15387 337 LPT--LPSGLQELSVSDNQL--ASLPTL---PSELYKLWAYNNRLTS-LPALP----SGLKELIVSGNRLTSLPV-L--- 400 (788)
T ss_pred ccc--cccccceEecCCCcc--CCCCCC---Ccccceehhhcccccc-Ccccc----cccceEEecCCcccCCCC-c---
Confidence 443 346899999999998 457753 3578899999999984 66532 247999999999997543 2
Q ss_pred CCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCccC---CCCCeeeccCCcccccCCCC
Q 045209 385 TDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAI---SGLDKLNVSFNNLCGEIPKT 449 (478)
Q Consensus 385 l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~L~~L~ls~N~l~~~ip~~ 449 (478)
.++|+.|++++|+++..+.. ..+|+.|++++|+|+ .+|..+ .+|+.|+|++|+|++.+|..
T Consensus 401 ~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 401 PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 36799999999999976643 357889999999995 678764 57889999999999887763
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=8.5e-23 Score=188.11 Aligned_cols=363 Identities=20% Similarity=0.215 Sum_probs=241.3
Q ss_pred CCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccC-CCCCCCCCcccCC
Q 045209 65 GDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIEN-NKLSGQIPANIGK 143 (478)
Q Consensus 65 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~l~~ 143 (478)
+...+.|.|.. |.++...+.+|..+++|+.|||+.+ .++..-|++|.++++|.+|-+.+ |+|+....+.|.+
T Consensus 66 P~~tveirLdq------N~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 66 PPETVEIRLDQ------NQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred CCcceEEEecc------CCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 34677777765 4566666678899999999999987 88888899999999888777766 8888655567888
Q ss_pred CCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCC------------CCch
Q 045209 144 LTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSG------------AIPD 211 (478)
Q Consensus 144 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~ 211 (478)
+..|+.|.+.-|++.-+..+.|..+++|..|.+..|.+...--.++..+..++.+.+..|.+.. ..|.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 9999999999998887777888999999999999998874433478888888888887776311 0111
Q ss_pred hhhCCCC----------------------CcEE--Ec-ccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCC
Q 045209 212 IFSSLKK----------------------LLFL--TL-SFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFH 266 (478)
Q Consensus 212 ~l~~l~~----------------------L~~L--~L-~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 266 (478)
.++.... ++.+ .+ +.+...+..|..-++..++|++|++++|.+++.-+.+|....
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 1111111 1111 11 112233344544455457999999999999988888899999
Q ss_pred CCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCC--CCCccCcCCCCEEEccCCCCCCC----CCCccc-------
Q 045209 267 SLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTD--PFPVMNVKGIESLDLSYNQFHLQ----QIPSWV------- 333 (478)
Q Consensus 267 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~------- 333 (478)
.+++|.|..|++...-...|.++..|+.|+|.+|+++. +..+.....|.+|++-.|++... .+-+|+
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~ 378 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVG 378 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCC
Confidence 99999999999886666778889999999999999885 34455677888888888876411 111111
Q ss_pred ----cCCCCccEEEccCCCCccc---CCCCccc---------cccCCcEEEccCCcccccCccccccCCCCcEEECcCCc
Q 045209 334 ----TSSPIIFSLKLAKCGIKMN---LNNWKPA---------QTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSK 397 (478)
Q Consensus 334 ----~~~~~L~~L~l~~n~l~~~---~~~~~~~---------~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~ 397 (478)
.....++.+.+++..+... .|+.... .+.-=++...|+..+...++. +. ....++.+.+|.
T Consensus 379 ~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~-iP--~d~telyl~gn~ 455 (498)
T KOG4237|consen 379 NPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRG-IP--VDVTELYLDGNA 455 (498)
T ss_pred CCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCC-CC--chhHHHhcccch
Confidence 1223455666655544311 1211100 000012333444444433321 11 235678888888
Q ss_pred CcccCCCccCCCCCCEEECCCCcCcccCCccCCC---CCeeeccCC
Q 045209 398 LKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAISG---LDKLNVSFN 440 (478)
Q Consensus 398 l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~---L~~L~ls~N 440 (478)
++..+.. .+.+| .+|+++|+|+...-..|++ |.+|-++||
T Consensus 456 ~~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 456 ITSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hcccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 8877654 46677 8899999986655555554 556677776
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=3.5e-20 Score=193.63 Aligned_cols=202 Identities=24% Similarity=0.421 Sum_probs=112.6
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEcc
Q 045209 122 ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQ 201 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 201 (478)
+...|+++++.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. ..|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4567777777776 4555442 46777777777777 3454443 46777777777766 4454432 356777777
Q ss_pred CCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCcc
Q 045209 202 HNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGT 281 (478)
Q Consensus 202 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 281 (478)
+|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.++.
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence 77666 4454442 35666777766665 4554332 356666666666663 343322 356666666666652
Q ss_pred chhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCc
Q 045209 282 LPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIK 350 (478)
Q Consensus 282 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 350 (478)
+|..+ .++|+.|++++|.+++. +...+++|+.|++++|++ ..+|..+. +.|+.|++++|.++
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l~~sL~~L~Ls~N~L--~~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTSL-PASLPPELQVLDVSKNQI--TVLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred CCccc--cccceeccccCCccccC-ChhhcCcccEEECCCCCC--CcCChhhc--CCcCEEECCCCcCC
Confidence 33322 14556666666655542 222334566666666655 23444331 34555555555554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=9.2e-20 Score=190.50 Aligned_cols=265 Identities=27% Similarity=0.338 Sum_probs=196.5
Q ss_pred CCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEc
Q 045209 145 TQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTL 224 (478)
Q Consensus 145 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 224 (478)
.+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 35678999999988 4565543 57999999999998 5666554 58999999999998 4566543 47999999
Q ss_pred ccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCC
Q 045209 225 SFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTD 304 (478)
Q Consensus 225 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 304 (478)
++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence 999998 7787654 38999999999998 5676553 589999999999984 554442 478899999999986
Q ss_pred CCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCcccccc
Q 045209 305 PFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNR 384 (478)
Q Consensus 305 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 384 (478)
. +....++|+.|++++|.+ ..+|..+. ++|+.|++++|++. .+|.... ..|+.|++++|+++..++. +.
T Consensus 319 L-P~~l~~sL~~L~Ls~N~L--t~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt~LP~~-l~- 387 (754)
T PRK15370 319 L-PETLPPGLKTLEAGENAL--TSLPASLP--PELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALTNLPEN-LP- 387 (754)
T ss_pred C-CccccccceeccccCCcc--ccCChhhc--CcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCCCCCHh-HH-
Confidence 4 334457899999999998 45776553 68999999999887 4554332 2478999999998865443 32
Q ss_pred CCCCcEEECcCCcCcccCCCc----cCCCCCCEEECCCCcCcccCCccCCCCCeeeccCCcccc
Q 045209 385 TDYLVEFRASGSKLKFNMDSL----RIVKTLKVLDLSRNLVFGKLPKAISGLDKLNVSFNNLCG 444 (478)
Q Consensus 385 l~~L~~L~ls~n~l~~~~~~~----~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ls~N~l~~ 444 (478)
..|+.|++++|++...+..+ ...+.+..|++.+|.++. ..+.+|+.+ ++.+.+.|
T Consensus 388 -~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl~~L~~L-l~s~~~~g 446 (754)
T PRK15370 388 -AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE---RTIQNMQRL-MSSVGYQG 446 (754)
T ss_pred -HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH---HHHHHHHHh-hhcccccC
Confidence 36888999999998766433 334778899999998863 344455555 34444444
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=4e-20 Score=170.60 Aligned_cols=298 Identities=21% Similarity=0.217 Sum_probs=168.1
Q ss_pred cCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccC-CCCCC
Q 045209 129 ENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQH-NQLSG 207 (478)
Q Consensus 129 s~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~ 207 (478)
++-.++ .+|..+. +.-++++|..|.|+.+.+.+|..+++|+.|||++|+|+.+.|.+|.++++|..|-+.+ |+|+.
T Consensus 54 r~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 54 RGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 333444 4555432 3567788888888877777888888888888888888877888888888877776665 78876
Q ss_pred CCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhc
Q 045209 208 AIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFS 287 (478)
Q Consensus 208 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 287 (478)
.....|+++..++.|.+.-|++.-.....+..+ +++..|.+.+|.+...-...+..+..++.+.+..|.+. ...
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL-~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i-----cdC 204 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDL-PSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI-----CDC 204 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHh-hhcchhcccchhhhhhccccccchhccchHhhhcCccc-----ccc
Confidence 666778888888888888888774444445555 48888888888777433346777778888888777642 112
Q ss_pred CCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCc--cccCCCCccEEEccCCCCcccCCCCccccccCCc
Q 045209 288 NLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPS--WVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYD 365 (478)
Q Consensus 288 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 365 (478)
+++.+..... .+. +.+....-.....+.+.++ ..++. .......+.+--.+.+...+.-|...+....+|+
T Consensus 205 nL~wla~~~a-~~~----ietsgarc~~p~rl~~~Ri--~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 205 NLPWLADDLA-MNP----IETSGARCVSPYRLYYKRI--NQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLR 277 (498)
T ss_pred ccchhhhHHh-hch----hhcccceecchHHHHHHHh--cccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccce
Confidence 2222211111 110 0111111111111222221 00110 0000001111111122222222222222222356
Q ss_pred EEEccCCcccccCccccccCCCCcEEECcCCcCcccC-CCccCCCCCCEEECCCCcCcccCCccCC---CCCeeeccCCc
Q 045209 366 YIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM-DSLRIVKTLKVLDLSRNLVFGKLPKAIS---GLDKLNVSFNN 441 (478)
Q Consensus 366 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~L~~L~ls~N~ 441 (478)
.|+|++|+|+++-+.+|.+...+++|.|..|++.... ..|..+..|+.|+|++|+|+...|.+|. .|.+|+|-.|.
T Consensus 278 ~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred EeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 6666666666666666666666667777666665433 4566666666677777777666666654 34455555554
Q ss_pred c
Q 045209 442 L 442 (478)
Q Consensus 442 l 442 (478)
+
T Consensus 358 ~ 358 (498)
T KOG4237|consen 358 F 358 (498)
T ss_pred c
Confidence 3
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.4e-19 Score=173.56 Aligned_cols=38 Identities=32% Similarity=0.456 Sum_probs=17.3
Q ss_pred CCCCEEeccCCcCCcc----chhhhcCCCCCCEEeccCCcCC
Q 045209 266 HSLDTLDLSWNQFSGT----LPKSFSNLTKIFNLNLAYNSLT 303 (478)
Q Consensus 266 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 303 (478)
++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 4445555555544421 2223344445555555555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.1e-18 Score=168.88 Aligned_cols=188 Identities=23% Similarity=0.280 Sum_probs=88.8
Q ss_pred cccccCCCCCeeecCCCCCccc----ccCccCCCCCCCCEEEccCCCCCC------CCCcccCCCCCCCEEEeecCcCCC
Q 045209 90 SSLVKVKNLGGIYLQDLGNISG----NFPDFISGLPELKYIYIENNKLSG------QIPANIGKLTQLEALSFSGNRFTG 159 (478)
Q Consensus 90 ~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~Ls~n~~~~------~~~~~l~~l~~L~~L~L~~n~i~~ 159 (478)
..+..+..|+.++++++ .+.. .++..+...+.+++++++++.+.+ .++..+..+++|++|++++|.+.+
T Consensus 17 ~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 34445555666666665 3322 234445555666666666665541 122334445566666666666554
Q ss_pred CCchhhcCCCC---CCEEEeecccCCCC----CCccCCCC-CCCCEEEccCCCCCCC----CchhhhCCCCCcEEEcccC
Q 045209 160 PIPSSISQLTQ---LTQLKLGQNFLTGA----IPNGISQL-KNLTYLDLQHNQLSGA----IPDIFSSLKKLLFLTLSFN 227 (478)
Q Consensus 160 ~~~~~~~~l~~---L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n 227 (478)
..+..+..+.+ |++|++++|++.+. +...+..+ ++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 44444433333 66666666555421 12223344 5555666655555522 2223344455555555555
Q ss_pred cCccccchH----HHhccccCcEEEccCccCCCCC----CcccCCCCCCCEEeccCCcCC
Q 045209 228 KFSGNIPTS----IASLAPQLQYLKLGHNVLSGKV----PDFLGKFHSLDTLDLSWNQFS 279 (478)
Q Consensus 228 ~l~~~~~~~----~~~~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~ 279 (478)
.+++..... +... ++|++|++++|.+++.. ...+..+++|++|++++|.++
T Consensus 176 ~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 176 GIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 554321111 1111 25555555555544221 122334445555555555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=4.8e-19 Score=145.62 Aligned_cols=165 Identities=32% Similarity=0.543 Sum_probs=122.6
Q ss_pred CCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCC
Q 045209 117 ISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLT 196 (478)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 196 (478)
+-++..++.|.+++|+++ .+|..++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|.+|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345667777888888887 67777888888888888888887 66777888888888888888776 6788888888888
Q ss_pred EEEccCCCCCC-CCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccC
Q 045209 197 YLDLQHNQLSG-AIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSW 275 (478)
Q Consensus 197 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 275 (478)
.||+.+|.+.. .+|..|..++.|+.|.++.|.+. .+|..+.++. +|+.|.+++|.+- ..|..++.+..|++|.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt-~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT-NLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc-ceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 88888887764 36666767777777777777776 6677777765 7777777777766 5677777777777777777
Q ss_pred CcCCccchhhhcC
Q 045209 276 NQFSGTLPKSFSN 288 (478)
Q Consensus 276 n~l~~~~~~~l~~ 288 (478)
|.++ .+|..+++
T Consensus 183 nrl~-vlppel~~ 194 (264)
T KOG0617|consen 183 NRLT-VLPPELAN 194 (264)
T ss_pred ceee-ecChhhhh
Confidence 7776 44544443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=7.2e-18 Score=138.69 Aligned_cols=161 Identities=30% Similarity=0.504 Sum_probs=144.5
Q ss_pred cCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCc
Q 045209 141 IGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLL 220 (478)
Q Consensus 141 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 220 (478)
+.++.+++.|.+++|+++ .+|..+..+.+|+.|++.+|+++ .+|..+..++.|+.|++..|.+. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446778888999999999 66778999999999999999998 78999999999999999999997 7899999999999
Q ss_pred EEEcccCcCcc-ccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccC
Q 045209 221 FLTLSFNKFSG-NIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAY 299 (478)
Q Consensus 221 ~L~L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 299 (478)
.||+.+|++.. .+|..++.+. .|+-|++++|.+. .+|..++++++|+.|.+..|.+- ..|+.++.+.+|++|.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~-tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMT-TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHH-HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 99999998753 5677788775 8999999999998 78888999999999999999987 7899999999999999999
Q ss_pred CcCCCCCC
Q 045209 300 NSLTDPFP 307 (478)
Q Consensus 300 n~l~~~~~ 307 (478)
|+++-.+|
T Consensus 183 nrl~vlpp 190 (264)
T KOG0617|consen 183 NRLTVLPP 190 (264)
T ss_pred ceeeecCh
Confidence 99976444
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=6.1e-14 Score=146.30 Aligned_cols=150 Identities=27% Similarity=0.518 Sum_probs=103.2
Q ss_pred CCCCChhhHHHHHHHHHhCCCCCCCCCCCCCCCCCCC-----cccceeeCCC-----CCEEEEEcCCCCCCCCCcceeec
Q 045209 19 AAKCHPDDESGLSGFKSAITQDPSGMLSSWKPGTDCC-----TWTGITCLSG-----DRVTSLSLNGQPEKPNSFLSGTI 88 (478)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~C~~~-----~~v~~l~l~~~~~~~~~~~~~~~ 88 (478)
...+.+.|..||+++|.++. ++.. .+|.. ++| .|.||.|... ..|+.|+|++. .+.|.+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~-~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n------~L~g~i 434 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLG-LPLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ------GLRGFI 434 (623)
T ss_pred ccccCchHHHHHHHHHHhcC-Cccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCC------CccccC
Confidence 34567889999999999885 3322 37963 344 6999999521 24778887763 467777
Q ss_pred ccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCC
Q 045209 89 SSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQL 168 (478)
Q Consensus 89 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l 168 (478)
|+.+.++++|+.|+|+++ .+.|.+|..+..+++|++|+|++|.+++.+|..+.++++|++|++++|.+++.+|..+...
T Consensus 435 p~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 435 PNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 777777777777777776 6667777667777777777777777777777777777777777777777776666666542
Q ss_pred -CCCCEEEeeccc
Q 045209 169 -TQLTQLKLGQNF 180 (478)
Q Consensus 169 -~~L~~L~L~~n~ 180 (478)
.++..+++.+|.
T Consensus 514 ~~~~~~l~~~~N~ 526 (623)
T PLN03150 514 LLHRASFNFTDNA 526 (623)
T ss_pred cccCceEEecCCc
Confidence 345566666554
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=2.6e-11 Score=120.93 Aligned_cols=192 Identities=32% Similarity=0.490 Sum_probs=92.4
Q ss_pred EEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCC-CCCEEEeecccCCCCCCccCCCCCCCCEEEccCC
Q 045209 125 YIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLT-QLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHN 203 (478)
Q Consensus 125 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 203 (478)
.+++..+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 455555554311 122334455666666666665 3333344442 5666666666555 33344555555666666555
Q ss_pred CCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccch
Q 045209 204 QLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLP 283 (478)
Q Consensus 204 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 283 (478)
++. .+|......++|+.|++++|++. .+|..+.... .|+++.+++|.+. ..+..+..++++..+.+.+|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~-~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS-ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhh-hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 555 33333334455555555555554 4444332221 3555555555322 23334444555555555555444 223
Q ss_pred hhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCC
Q 045209 284 KSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 324 (478)
Q Consensus 284 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l 324 (478)
..++.++.++.|++++|.++.........+++.|++++|.+
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred chhccccccceeccccccccccccccccCccCEEeccCccc
Confidence 34444444555555555554443344444455555555444
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=2.9e-13 Score=131.19 Aligned_cols=175 Identities=26% Similarity=0.390 Sum_probs=122.9
Q ss_pred eeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecc
Q 045209 100 GIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQN 179 (478)
Q Consensus 100 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 179 (478)
..|++.+ -...+|..+..+..|+.+.+..|.+. .+|..+.++..|.+++|+.|+++ .+|..++.++ |+.|.+++|
T Consensus 79 ~aDlsrN--R~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRN--RFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhcccc--ccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 3445443 22345666666777777777777776 67777777777777777777777 5666666654 777777777
Q ss_pred cCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCC
Q 045209 180 FLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVP 259 (478)
Q Consensus 180 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 259 (478)
+++ .+|+.++..+.|.+|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||++.|+++ .+|
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L--pLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL--PLIRLDFSCNKIS-YLP 227 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--ceeeeecccCcee-ecc
Confidence 776 66777777777777777777776 45666777777777777777776 667666644 6777777777777 677
Q ss_pred cccCCCCCCCEEeccCCcCCccchhhh
Q 045209 260 DFLGKFHSLDTLDLSWNQFSGTLPKSF 286 (478)
Q Consensus 260 ~~l~~l~~L~~L~L~~n~l~~~~~~~l 286 (478)
..|.+|+.|++|.|.+|.+. ..|..+
T Consensus 228 v~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred hhhhhhhhheeeeeccCCCC-CChHHH
Confidence 77777777777777777776 344443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=7.3e-13 Score=128.41 Aligned_cols=193 Identities=28% Similarity=0.443 Sum_probs=137.5
Q ss_pred CCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEE
Q 045209 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLD 199 (478)
Q Consensus 120 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 199 (478)
+..-...|++.|++. ++|..+..+-.|+.+.+..|.+. .+|..+.++..|+.|+|+.|++. ..|..+..++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456677777777 67777777777777778877777 66777778888888888888777 5666777766 77788
Q ss_pred ccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCC
Q 045209 200 LQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFS 279 (478)
Q Consensus 200 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 279 (478)
+++|+++ .+|..++..+.|..|+.+.|.+. .+|..+..+. +|+.|.+..|.+. .+|..+..+ .|..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 8877776 56666777777788888888776 6777777775 7777888777776 456666633 4777888888877
Q ss_pred ccchhhhcCCCCCCEEeccCCcCCCCCCccCcC----CCCEEEccCC
Q 045209 280 GTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVK----GIESLDLSYN 322 (478)
Q Consensus 280 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~----~L~~L~l~~n 322 (478)
.+|-.|.++++|++|.|.+|.++.++...... -.++|+..-+
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 67777888888888888888877654432211 2455555544
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=3.3e-11 Score=120.12 Aligned_cols=198 Identities=36% Similarity=0.482 Sum_probs=138.9
Q ss_pred CEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCC-CCCEEEccCCCCCCCCchhhhCCCCCcEEEccc
Q 045209 148 EALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLK-NLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSF 226 (478)
Q Consensus 148 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 226 (478)
..+.+..+.+... ...+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 3567777776422 233455577888888888877 5555566664 7888888888887 4455677888888888888
Q ss_pred CcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCC-C
Q 045209 227 NKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTD-P 305 (478)
Q Consensus 227 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~ 305 (478)
|+++ .+|...... +.|+.|++++|.++ .+|........|+++.+++|... ..+..+..+.++..+.+.+|++.. .
T Consensus 173 N~l~-~l~~~~~~~-~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNL-SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLP 248 (394)
T ss_pred chhh-hhhhhhhhh-hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeecc
Confidence 8887 565554344 47888888888887 56665556666888888888543 345567777788888888887766 3
Q ss_pred CCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCC
Q 045209 306 FPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNN 355 (478)
Q Consensus 306 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 355 (478)
.....++.+++|++++|.+ ..++. +....+++.|+++++.+....+.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i--~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQI--SSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred chhccccccceeccccccc--ccccc-ccccCccCEEeccCccccccchh
Confidence 4445667788888888887 44555 77778888888888877755554
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.3e-11 Score=110.81 Aligned_cols=137 Identities=26% Similarity=0.250 Sum_probs=102.0
Q ss_pred hhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCC
Q 045209 211 DIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLT 290 (478)
Q Consensus 211 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 290 (478)
.....++.|+++||++|.|+ .+..+. ++.|.++.|+++.|.+... +.+..+++|+.||+++|.++ .+..+-..+-
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLG 352 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLG 352 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhc
Confidence 33445667888888888886 444443 3446888999999888733 34778889999999999887 4445556677
Q ss_pred CCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCccc
Q 045209 291 KIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMN 352 (478)
Q Consensus 291 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 352 (478)
++++|.|++|.+.+......+-+|..||+++|+|..-.--..++++|.|+.+.+.+|.+.+.
T Consensus 353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred CEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88899999998887666677788899999999884323334578888888888888888743
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.1e-11 Score=116.75 Aligned_cols=204 Identities=22% Similarity=0.188 Sum_probs=92.9
Q ss_pred CCCCCEEEeecCcCCCCCc--hhhcCCCCCCEEEeecccCCCC--CCccCCCCCCCCEEEccCCCCCCCCch-hhhCCCC
Q 045209 144 LTQLEALSFSGNRFTGPIP--SSISQLTQLTQLKLGQNFLTGA--IPNGISQLKNLTYLDLQHNQLSGAIPD-IFSSLKK 218 (478)
Q Consensus 144 l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~ 218 (478)
+.+|+++.|.+..+.. .+ .....+++++.|||+.|-+... +..-...+|+|+.|+++.|.+...... .-..++.
T Consensus 120 ~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3444445554444431 11 1233445555555555444311 112233445555555555544321111 1113445
Q ss_pred CcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccc-hhhhcCCCCCCEEec
Q 045209 219 LLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTL-PKSFSNLTKIFNLNL 297 (478)
Q Consensus 219 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L 297 (478)
|+.|.++.|.++.....++....|+|+.|++..|..-.........++.|++|||++|++.... -...+.++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 5666666665554333344444456666666666322122222334455666666666554221 023455566666666
Q ss_pred cCCcCCCCC--Cc------cCcCCCCEEEccCCCCCCCCCCc--cccCCCCccEEEccCCCCc
Q 045209 298 AYNSLTDPF--PV------MNVKGIESLDLSYNQFHLQQIPS--WVTSSPIIFSLKLAKCGIK 350 (478)
Q Consensus 298 ~~n~l~~~~--~~------~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~~L~~L~l~~n~l~ 350 (478)
+.+.+.+.. +. ..+++|++|++..|++ ...+. .+..+++|+.|.+..|.++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I--~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI--RDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCcc--ccccccchhhccchhhhhhccccccc
Confidence 666555311 11 2455666666666665 22221 2333444555554444443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.1e-11 Score=111.25 Aligned_cols=133 Identities=24% Similarity=0.241 Sum_probs=80.7
Q ss_pred ccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCcc
Q 045209 261 FLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIF 340 (478)
Q Consensus 261 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 340 (478)
.+..++.|+++|+++|.++ .+.+++.-.|.++.|++++|.+........+++|+.||+++|.+ ..+..|-..+-+++
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~L--s~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLL--AECVGWHLKLGNIK 355 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchh--HhhhhhHhhhcCEe
Confidence 3344566777777777776 45556666677777777777777665666777777777777776 45556655555555
Q ss_pred EEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccC--CCccCCCCCCEEECCC
Q 045209 341 SLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM--DSLRIVKTLKVLDLSR 418 (478)
Q Consensus 341 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~--~~~~~l~~L~~L~Ls~ 418 (478)
.|.++.|.+. +. ..+..+-+|..||+++|+|.... ..++.+|-|+.+.|.+
T Consensus 356 tL~La~N~iE-------------------------~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 356 TLKLAQNKIE-------------------------TL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eeehhhhhHh-------------------------hh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 5555555443 21 12344445556666666655332 3455566666666666
Q ss_pred CcCcc
Q 045209 419 NLVFG 423 (478)
Q Consensus 419 N~l~~ 423 (478)
|.+.+
T Consensus 409 NPl~~ 413 (490)
T KOG1259|consen 409 NPLAG 413 (490)
T ss_pred CCccc
Confidence 66643
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.07 E-value=4.1e-10 Score=117.78 Aligned_cols=107 Identities=37% Similarity=0.577 Sum_probs=69.7
Q ss_pred CCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEcc
Q 045209 171 LTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLG 250 (478)
Q Consensus 171 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 250 (478)
++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+. +|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~-~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC-CCCEEECc
Confidence 55666666666666666666666666677666666666666666666666777766666666666666653 66677776
Q ss_pred CccCCCCCCcccCCC-CCCCEEeccCCcC
Q 045209 251 HNVLSGKVPDFLGKF-HSLDTLDLSWNQF 278 (478)
Q Consensus 251 ~n~l~~~~~~~l~~l-~~L~~L~L~~n~l 278 (478)
+|.+++.+|..+... .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 666666666655432 3455666666643
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=4.3e-11 Score=109.92 Aligned_cols=89 Identities=24% Similarity=0.359 Sum_probs=53.4
Q ss_pred CCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccc----cCc-------cCCCCCCCCEEEccCCCCC
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGN----FPD-------FISGLPELKYIYIENNKLS 134 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~-------~l~~l~~L~~L~Ls~n~~~ 134 (478)
..++.|+|+|+... .--...+...+.+.+.|+..++++ -++|. +|+ .+..+++|++|+||+|.|.
T Consensus 30 ~s~~~l~lsgnt~G--~EAa~~i~~~L~~~~~L~~v~~sd--~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFG--TEAARAIAKVLASKKELREVNLSD--MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred CceEEEeccCCchh--HHHHHHHHHHHhhcccceeeehHh--hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 45788899885310 001123445667778888888876 34443 333 2345677888888888776
Q ss_pred CCCCcc----cCCCCCCCEEEeecCcCC
Q 045209 135 GQIPAN----IGKLTQLEALSFSGNRFT 158 (478)
Q Consensus 135 ~~~~~~----l~~l~~L~~L~L~~n~i~ 158 (478)
...++. +..+..|++|.|.+|.+.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 443332 334566777777777654
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.3e-11 Score=112.92 Aligned_cols=184 Identities=27% Similarity=0.235 Sum_probs=123.4
Q ss_pred cCCCCCCEEEeecccCCCCCC--ccCCCCCCCCEEEccCCCCCCC--CchhhhCCCCCcEEEcccCcCccccchHHHhcc
Q 045209 166 SQLTQLTQLKLGQNFLTGAIP--NGISQLKNLTYLDLQHNQLSGA--IPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLA 241 (478)
Q Consensus 166 ~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 241 (478)
.++.+|+++.|.++.+. ..+ .....+++++.|+++.|-+... +.+....+++|+.|+++.|++.-..........
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45788999999888775 222 3566789999999999877643 234557889999999999987643333333344
Q ss_pred ccCcEEEccCccCCCCCC-cccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCC---CccCcCCCCEE
Q 045209 242 PQLQYLKLGHNVLSGKVP-DFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPF---PVMNVKGIESL 317 (478)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~~L~~L 317 (478)
+.|+.|.++.|.++...- .....+++|+.|++..|...........-+..|+.|+|++|.+.+.. ....++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 588888888888773211 22346788888888888532232333445677888888888776543 23367778888
Q ss_pred EccCCCCCCCCCCcc-----ccCCCCccEEEccCCCCc
Q 045209 318 DLSYNQFHLQQIPSW-----VTSSPIIFSLKLAKCGIK 350 (478)
Q Consensus 318 ~l~~n~l~~~~~~~~-----~~~~~~L~~L~l~~n~l~ 350 (478)
+++.+.+.....|+. ....++|++|++..|++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 888887754444543 345567777777777664
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=5.4e-10 Score=96.22 Aligned_cols=123 Identities=27% Similarity=0.302 Sum_probs=31.2
Q ss_pred CCCEEEeecccCCCCCCccCC-CCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEE
Q 045209 170 QLTQLKLGQNFLTGAIPNGIS-QLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLK 248 (478)
Q Consensus 170 ~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 248 (478)
++++|+|.+|.|+.. +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+++ .+...+....|+|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 444444444444421 1232 244455555555555422 22444455555555555554 23222322223555555
Q ss_pred ccCccCCCCC-CcccCCCCCCCEEeccCCcCCccc---hhhhcCCCCCCEEec
Q 045209 249 LGHNVLSGKV-PDFLGKFHSLDTLDLSWNQFSGTL---PKSFSNLTKIFNLNL 297 (478)
Q Consensus 249 L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L 297 (478)
+++|.+.... -..+..+++|+.|++.+|.++..- ...+..+|+|+.||-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 5555554211 133445566666666666554221 112345566665553
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=4.4e-11 Score=109.84 Aligned_cols=159 Identities=23% Similarity=0.252 Sum_probs=83.9
Q ss_pred CCCCCCEEEeecccCCCCCCcc----CCCCCCCCEEEccCCCCCCCCch-------------hhhCCCCCcEEEcccCcC
Q 045209 167 QLTQLTQLKLGQNFLTGAIPNG----ISQLKNLTYLDLQHNQLSGAIPD-------------IFSSLKKLLFLTLSFNKF 229 (478)
Q Consensus 167 ~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n~l 229 (478)
.+++|++|+||.|-+....+.. +.++..|++|.|.+|.+...-.. ....-++|+.+...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4455555555555554222221 23455566666665555421111 123345677777777766
Q ss_pred ccccchH---HHhccccCcEEEccCccCCCC----CCcccCCCCCCCEEeccCCcCCcc----chhhhcCCCCCCEEecc
Q 045209 230 SGNIPTS---IASLAPQLQYLKLGHNVLSGK----VPDFLGKFHSLDTLDLSWNQFSGT----LPKSFSNLTKIFNLNLA 298 (478)
Q Consensus 230 ~~~~~~~---~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~ 298 (478)
....... .+...+.|+.+.+..|.|... ....+..+++|+.|||..|-++.. +...+..+++|+.++++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 5222111 122225677777777665421 113455677777777777766532 23445566677777777
Q ss_pred CCcCCCCCCc-------cCcCCCCEEEccCCCCC
Q 045209 299 YNSLTDPFPV-------MNVKGIESLDLSYNQFH 325 (478)
Q Consensus 299 ~n~l~~~~~~-------~~~~~L~~L~l~~n~l~ 325 (478)
+|.+...... ...++|+.|.+.+|.++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 7766542211 13456666666666664
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=4.2e-10 Score=96.88 Aligned_cols=109 Identities=32% Similarity=0.447 Sum_probs=35.1
Q ss_pred CCCCCCCCEEEccCCCCCCCCCcccC-CCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccC-CCCCC
Q 045209 117 ISGLPELKYIYIENNKLSGQIPANIG-KLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGI-SQLKN 194 (478)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~ 194 (478)
+.+..++++|+|++|.|+. + +.++ .+.+|+.|++++|.|+.. +.+..++.|++|++++|.++. +.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 3455577888888888763 3 2344 467788888888887743 346677788888888888773 33333 35677
Q ss_pred CCEEEccCCCCCCC-CchhhhCCCCCcEEEcccCcCc
Q 045209 195 LTYLDLQHNQLSGA-IPDIFSSLKKLLFLTLSFNKFS 230 (478)
Q Consensus 195 L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 230 (478)
|++|++++|.+... .-..+..+++|+.|++.+|+++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 88888888777642 1245566777777777777775
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=7.1e-10 Score=118.63 Aligned_cols=108 Identities=25% Similarity=0.389 Sum_probs=66.1
Q ss_pred CCCCeeecCCCCC-cccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEE
Q 045209 96 KNLGGIYLQDLGN-ISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQL 174 (478)
Q Consensus 96 ~~L~~L~l~~~~~-~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 174 (478)
+.|++|-+.++.. +.....++|..++.|++||+++|.--+.+|..++.+-+||+|++++..++ .+|..+.++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 3566666555421 23333344666777777777766544566777777777777777777766 566677777777777
Q ss_pred EeecccCCCCCCccCCCCCCCCEEEccCCC
Q 045209 175 KLGQNFLTGAIPNGISQLKNLTYLDLQHNQ 204 (478)
Q Consensus 175 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 204 (478)
++..+.....++.....+++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 776665443444445556677777665543
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1.5e-10 Score=115.70 Aligned_cols=244 Identities=26% Similarity=0.330 Sum_probs=151.1
Q ss_pred cCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCE
Q 045209 94 KVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQ 173 (478)
Q Consensus 94 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 173 (478)
.+..++.++++.+ ..+.+-..+..+.+|+.|++.+|.|.. +...+..+++|++|++++|.|+.. ..+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n--~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQN--LIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchh--hhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 4555555655553 222334446778888888888888873 333366788888888888888754 33566777888
Q ss_pred EEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCc-hhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCc
Q 045209 174 LKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIP-DIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHN 252 (478)
Q Consensus 174 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n 252 (478)
|++++|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.. + ..+.... .+..+++..|
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i-~~~~~~~-~l~~~~l~~n 218 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-I-EGLDLLK-KLVLLSLLDN 218 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-c-cchHHHH-HHHHhhcccc
Confidence 88888888733 345667888888888888874433 2 4677788888888887752 2 2222221 4445567777
Q ss_pred cCCCCCCcccCCCC--CCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCC-C-
Q 045209 253 VLSGKVPDFLGKFH--SLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQ-Q- 328 (478)
Q Consensus 253 ~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~- 328 (478)
.++..-+ +.... +|+.+++++|.+. ..+..+..+..+..+++..|++...........+..+....+.+... .
T Consensus 219 ~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 219 KISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred cceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhh
Confidence 6663221 22222 3778888888776 33345667777888888888777655555566666666666665201 0
Q ss_pred CCc-cccCCCCccEEEccCCCCcc
Q 045209 329 IPS-WVTSSPIIFSLKLAKCGIKM 351 (478)
Q Consensus 329 ~~~-~~~~~~~L~~L~l~~n~l~~ 351 (478)
... .....+.++.+.+..+....
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hccccccccccccccccccCcccc
Confidence 011 13344555555555555443
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.86 E-value=3.3e-09 Score=68.73 Aligned_cols=40 Identities=48% Similarity=1.076 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCCCCCCC--CCCCcccceeeC
Q 045209 24 PDDESGLSGFKSAITQDPSGMLSSWKPG--TDCCTWTGITCL 63 (478)
Q Consensus 24 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~C~ 63 (478)
++|++||++||.++..+|.+.+.+|+.+ .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5789999999999987777889999986 799999999995
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=1e-08 Score=109.84 Aligned_cols=129 Identities=26% Similarity=0.389 Sum_probs=75.6
Q ss_pred CCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCc--CCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCE
Q 045209 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNR--FTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTY 197 (478)
Q Consensus 120 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 197 (478)
....|...+-+|.+. .++... ..++|++|-+..|. +.......|..++.|++|||++|.--+.+|..++.+-+|++
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 345566666666554 233322 23456666666664 34333444666777777777766555566777777777777
Q ss_pred EEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCc
Q 045209 198 LDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHN 252 (478)
Q Consensus 198 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n 252 (478)
|+++++.+. .+|..+.++.+|.+|++..+.....+|.....+. +|++|.+...
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~-~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ-SLRVLRLPRS 652 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcc-cccEEEeecc
Confidence 777776666 5666677777777777766554333333333343 6666666544
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=5.9e-10 Score=111.46 Aligned_cols=265 Identities=25% Similarity=0.212 Sum_probs=163.1
Q ss_pred CCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEE
Q 045209 169 TQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLK 248 (478)
Q Consensus 169 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 248 (478)
+.++.++...+.+....-. ...+..++.+.+..|.+.. +...+..+.+|+.|++.+|.+. .+...+..+ ++|++|+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~-~~L~~L~ 124 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSL-VNLQVLD 124 (414)
T ss_pred chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhh-hcchhee
Confidence 3455555555543322111 1455667777777777763 3344667788888888888886 333324444 4888888
Q ss_pred ccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCCCC
Q 045209 249 LGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFHL 326 (478)
Q Consensus 249 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~ 326 (478)
+++|.|+.. ..+..++.|+.|++++|.++.. ..+..++.|+.+++++|.++.... ...+.+++.+++.+|.+.
T Consensus 125 ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~- 199 (414)
T KOG0531|consen 125 LSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR- 199 (414)
T ss_pred ccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-
Confidence 888888744 2355667788888888887633 345557788888888888876555 367777888888888763
Q ss_pred CCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCCCcc
Q 045209 327 QQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLR 406 (478)
Q Consensus 327 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~ 406 (478)
...++..+..+..+++..|.++..-+....... .|+.+++++|.+.... ..+..+..+..+++.+|++.... .+.
T Consensus 200 --~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~-~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~-~~~ 274 (414)
T KOG0531|consen 200 --EIEGLDLLKKLVLLSLLDNKISKLEGLNELVML-HLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE-GLE 274 (414)
T ss_pred --cccchHHHHHHHHhhcccccceeccCcccchhH-HHHHHhcccCcccccc-ccccccccccccchhhccccccc-ccc
Confidence 233344445555557777776633221111100 2577788888777543 34556677778888888776432 234
Q ss_pred CCCCCCEEECCCCcCccc---CCc----cCCCCCeeeccCCcccccCC
Q 045209 407 IVKTLKVLDLSRNLVFGK---LPK----AISGLDKLNVSFNNLCGEIP 447 (478)
Q Consensus 407 ~l~~L~~L~Ls~N~l~~~---~p~----~l~~L~~L~ls~N~l~~~ip 447 (478)
..+.+..+.+..|.+... ... ....++.+.+.+|.+....+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 455666667777766422 111 12356777888887776555
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=5.4e-09 Score=73.92 Aligned_cols=60 Identities=35% Similarity=0.514 Sum_probs=33.4
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeeccc
Q 045209 121 PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNF 180 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 180 (478)
|+|++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345556666665554333455555566666666555554444555555555555555554
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=1e-08 Score=72.50 Aligned_cols=59 Identities=44% Similarity=0.632 Sum_probs=32.2
Q ss_pred CCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCC
Q 045209 146 QLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQ 204 (478)
Q Consensus 146 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 204 (478)
+|++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555555554444455555555555555554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.7e-08 Score=91.07 Aligned_cols=156 Identities=23% Similarity=0.241 Sum_probs=92.4
Q ss_pred CCCEEEeecCcCCC-CCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCC-CCCC-CchhhhCCCCCcEE
Q 045209 146 QLEALSFSGNRFTG-PIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQ-LSGA-IPDIFSSLKKLLFL 222 (478)
Q Consensus 146 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L 222 (478)
.|+++||+...|+. .+-..+..+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.. ..-.+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57788888777763 122335667888888888888887777778888888888888754 3211 12245677788888
Q ss_pred EcccCcCccccch-HHHhccccCcEEEccCccCC--C-CCCcccCCCCCCCEEeccCC-cCCccchhhhcCCCCCCEEec
Q 045209 223 TLSFNKFSGNIPT-SIASLAPQLQYLKLGHNVLS--G-KVPDFLGKFHSLDTLDLSWN-QFSGTLPKSFSNLTKIFNLNL 297 (478)
Q Consensus 223 ~L~~n~l~~~~~~-~~~~~~~~L~~L~L~~n~l~--~-~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L 297 (478)
+++.+.+...... .+....++|+.|+++++.-. . .+..-..++++|.+|||+.+ .++......+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 8888776543322 22333456777777765321 0 11111235666666666655 233333334555556666666
Q ss_pred cCCc
Q 045209 298 AYNS 301 (478)
Q Consensus 298 ~~n~ 301 (478)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 5553
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=1.7e-08 Score=101.23 Aligned_cols=196 Identities=30% Similarity=0.366 Sum_probs=104.9
Q ss_pred CCCCCEEEeecCcCCCCC-chhhcCCCCCCEEEeecccCCCCCCccCCCC-CCCCEEEccCCCCC----------CCCch
Q 045209 144 LTQLEALSFSGNRFTGPI-PSSISQLTQLTQLKLGQNFLTGAIPNGISQL-KNLTYLDLQHNQLS----------GAIPD 211 (478)
Q Consensus 144 l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~----------~~~~~ 211 (478)
+++++.|.+-.-.-.+.. |-.+..+.+|+.|.+.++.+... .++..+ ..|++|-.. |.+. +.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccccc
Confidence 345555555444333322 55677788999999998887531 111111 123333211 1111 01111
Q ss_pred hhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchh-hhcCCC
Q 045209 212 IFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPK-SFSNLT 290 (478)
Q Consensus 212 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~ 290 (478)
++ .+.+|.+.+.++|.+. .+..++. +.+.++.|+|++|+++.. +.+..+++|++|||+.|.+. .+|. ....+
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc- 232 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC- 232 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-
Confidence 11 1234666666777665 3333333 335777777777777633 35666777777777777776 3332 12233
Q ss_pred CCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCC
Q 045209 291 KIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGI 349 (478)
Q Consensus 291 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 349 (478)
+|+.|.+++|.++......++.+|+.||+++|-+..-.--..+..+..|+.|+|.+|.+
T Consensus 233 ~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 37777777777776666666777777777777553111112234455666666666654
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.2e-07 Score=84.02 Aligned_cols=188 Identities=21% Similarity=0.170 Sum_probs=88.9
Q ss_pred CCCCCEEEeecCcCCC--CCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCC-chhhhCCCCCc
Q 045209 144 LTQLEALSFSGNRFTG--PIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAI-PDIFSSLKKLL 220 (478)
Q Consensus 144 l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~ 220 (478)
.+.+++++|.+|.|++ .+...+.++|.|++|+++.|++...+...-....+|+.|-+.+..+.... ...+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4556666666666653 11222345566666666666554332211123445555555555443221 12233444445
Q ss_pred EEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCc--cchhhhcCCCCCCEEecc
Q 045209 221 FLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSG--TLPKSFSNLTKIFNLNLA 298 (478)
Q Consensus 221 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~ 298 (478)
.|.++.|.+. .++++.+-+.. .-+.+++|....|.... ..-..-.-++++..+.+.
T Consensus 150 elHmS~N~~r---------------q~n~Dd~c~e~-------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~ 207 (418)
T KOG2982|consen 150 ELHMSDNSLR---------------QLNLDDNCIED-------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVC 207 (418)
T ss_pred hhhhccchhh---------------hhccccccccc-------cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeee
Confidence 5544444221 11111111110 11234444443332210 011111234677777777
Q ss_pred CCcCCCCC---CccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccC
Q 045209 299 YNSLTDPF---PVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNL 353 (478)
Q Consensus 299 ~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 353 (478)
.|.+.+.. ....++.+..|+++.+++..-.--..+..++.|..|.++++.+...+
T Consensus 208 e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 208 EGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 77665432 23355666678888887732222234567777888888777765443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2e-08 Score=90.69 Aligned_cols=104 Identities=23% Similarity=0.194 Sum_probs=44.5
Q ss_pred CcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCc-CCccc-hhhhcCCCCCCEEe
Q 045209 219 LLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQ-FSGTL-PKSFSNLTKIFNLN 296 (478)
Q Consensus 219 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~ 296 (478)
|+.+||++..++...-..+...+.+|+.|.+.++.+.+.+...+++-.+|+.|+++.+. ++... --.+..++.|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 44455544444322222222222344555555554444444444444555555555432 22111 11234555555555
Q ss_pred ccCCcCCCCCCc----cCcCCCCEEEccCC
Q 045209 297 LAYNSLTDPFPV----MNVKGIESLDLSYN 322 (478)
Q Consensus 297 L~~n~l~~~~~~----~~~~~L~~L~l~~n 322 (478)
+++|.+..+... ..-++|+.|+++++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 555554432211 12334555555554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=3.7e-08 Score=98.84 Aligned_cols=175 Identities=27% Similarity=0.406 Sum_probs=89.2
Q ss_pred CcccCCCCCCCEEEeecCcCCCCCchhhcCC-CCCCEEEeecccCC----------CCCCccCCCCCCCCEEEccCCCCC
Q 045209 138 PANIGKLTQLEALSFSGNRFTGPIPSSISQL-TQLTQLKLGQNFLT----------GAIPNGISQLKNLTYLDLQHNQLS 206 (478)
Q Consensus 138 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~~~~l~~l~~L~~L~l~~n~l~ 206 (478)
|-.+..+..|++|.+.++.+.. ...+..+ .+|++|...+ .++ |.+..++ ..-.|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 6677888999999999998863 1112111 2344433221 111 1111111 1123555555566554
Q ss_pred CCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCc-ccCCCCCCCEEeccCCcCCccchhh
Q 045209 207 GAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPD-FLGKFHSLDTLDLSWNQFSGTLPKS 285 (478)
Q Consensus 207 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~ 285 (478)
.+..++.-++.++.|+|++|+++. + ..+..+ +.|++|||+.|.+. .+|. ....++ |+.|.+++|.++.. ..
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l-~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTK-V-DNLRRL-PKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RG 249 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhc-ccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hh
Confidence 334455555666666666666642 2 133333 36666666666655 2332 222232 66666666665521 34
Q ss_pred hcCCCCCCEEeccCCcCCCC---CCccCcCCCCEEEccCCCC
Q 045209 286 FSNLTKIFNLNLAYNSLTDP---FPVMNVKGIESLDLSYNQF 324 (478)
Q Consensus 286 l~~l~~L~~L~L~~n~l~~~---~~~~~~~~L~~L~l~~n~l 324 (478)
+.++++|+.||++.|-+.+. .+...+..|+.|+|.+|++
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55566666666666655542 2233444566666666655
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=2.8e-07 Score=83.40 Aligned_cols=188 Identities=20% Similarity=0.215 Sum_probs=121.7
Q ss_pred CCCCCCCEEEccCCCCCCC--CCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCC-CCccCCCCCC
Q 045209 118 SGLPELKYIYIENNKLSGQ--IPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGA-IPNGISQLKN 194 (478)
Q Consensus 118 ~~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~ 194 (478)
..++.++.+||.+|.|+.. +...+.++|.|++|+++.|++...+-..-....+|++|.|.+..+... ....+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4578899999999998732 334466899999999999998754332223567899999988877533 2335677888
Q ss_pred CCEEEccCCCCCCC--CchhhhCC-CCCcEEEcccCcCcc-ccchHHHhccccCcEEEccCccCCCC-CCcccCCCCCCC
Q 045209 195 LTYLDLQHNQLSGA--IPDIFSSL-KKLLFLTLSFNKFSG-NIPTSIASLAPQLQYLKLGHNVLSGK-VPDFLGKFHSLD 269 (478)
Q Consensus 195 L~~L~l~~n~l~~~--~~~~l~~l-~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~ 269 (478)
+++|.++.|.+... ..+..... +.+++|.+..|.... .-...+...+|++..+-+..|.+... ........+.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 89999998854311 11112222 345566655553320 00112334457888888888876532 224455667777
Q ss_pred EEeccCCcCCcc-chhhhcCCCCCCEEeccCCcCCCC
Q 045209 270 TLDLSWNQFSGT-LPKSFSNLTKIFNLNLAYNSLTDP 305 (478)
Q Consensus 270 ~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~ 305 (478)
-|.|+.|++... .-+.+.++++|..|.++++.+.++
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 888888887643 234677888888888888887653
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=5.9e-07 Score=80.28 Aligned_cols=205 Identities=21% Similarity=0.211 Sum_probs=110.3
Q ss_pred CCCCCEEEccCCCCCCCC----CcccCCCCCCCEEEeecCcCC---CCC-------chhhcCCCCCCEEEeecccCCCCC
Q 045209 120 LPELKYIYIENNKLSGQI----PANIGKLTQLEALSFSGNRFT---GPI-------PSSISQLTQLTQLKLGQNFLTGAI 185 (478)
Q Consensus 120 l~~L~~L~Ls~n~~~~~~----~~~l~~l~~L~~L~L~~n~i~---~~~-------~~~~~~l~~L~~L~L~~n~l~~~~ 185 (478)
+..+..++||+|.|.... ...+.+-.+|+..+++.-... ..+ .+.+.++|+|+..+|+.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455555556655554221 122334455555555543211 011 123445666666666666665444
Q ss_pred Ccc----CCCCCCCCEEEccCCCCCCC----Cch---------hhhCCCCCcEEEcccCcCccccchHHH----hccccC
Q 045209 186 PNG----ISQLKNLTYLDLQHNQLSGA----IPD---------IFSSLKKLLFLTLSFNKFSGNIPTSIA----SLAPQL 244 (478)
Q Consensus 186 ~~~----l~~l~~L~~L~l~~n~l~~~----~~~---------~l~~l~~L~~L~L~~n~l~~~~~~~~~----~~~~~L 244 (478)
|+. +++-+.|.+|.+++|.+... +.. ....-|.|+++....|++. ..+.... .....|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence 432 34556666777766665422 111 1134467777777777765 3332211 111367
Q ss_pred cEEEccCccCCCCCC-----cccCCCCCCCEEeccCCcCCcc----chhhhcCCCCCCEEeccCCcCCCCCC--------
Q 045209 245 QYLKLGHNVLSGKVP-----DFLGKFHSLDTLDLSWNQFSGT----LPKSFSNLTKIFNLNLAYNSLTDPFP-------- 307 (478)
Q Consensus 245 ~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~-------- 307 (478)
+++.+..|.|....- ..+..+++|+.||+..|.++-. +...+..++.|+.|.+..|-++....
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 777777776653211 1234567888888888877633 22345566777888888887764221
Q ss_pred ccCcCCCCEEEccCCCCC
Q 045209 308 VMNVKGIESLDLSYNQFH 325 (478)
Q Consensus 308 ~~~~~~L~~L~l~~n~l~ 325 (478)
....++|..|-..+|.+.
T Consensus 268 e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 268 EKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhcCCCccccccchhhhc
Confidence 124567777777777664
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=8.5e-08 Score=76.80 Aligned_cols=90 Identities=26% Similarity=0.319 Sum_probs=50.8
Q ss_pred CCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEE
Q 045209 144 LTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLT 223 (478)
Q Consensus 144 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 223 (478)
..+|...+|++|.+....++.-...+.++.|++.+|.+. .+|..++.++.|+.++++.|.+. ..|+.+..+.++..|+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 344555566666665332222233445666666666665 55666666666666666666665 4455555566666666
Q ss_pred cccCcCccccchH
Q 045209 224 LSFNKFSGNIPTS 236 (478)
Q Consensus 224 L~~n~l~~~~~~~ 236 (478)
..+|.+. .+|..
T Consensus 130 s~~na~~-eid~d 141 (177)
T KOG4579|consen 130 SPENARA-EIDVD 141 (177)
T ss_pred CCCCccc-cCcHH
Confidence 6666554 44444
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=1.9e-06 Score=90.41 Aligned_cols=152 Identities=22% Similarity=0.276 Sum_probs=87.8
Q ss_pred CCCCCeeecCCCCCcccccCccCC-CCCCCCEEEccCCCCCC-CCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCC
Q 045209 95 VKNLGGIYLQDLGNISGNFPDFIS-GLPELKYIYIENNKLSG-QIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLT 172 (478)
Q Consensus 95 l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 172 (478)
-.+|++|++++...+...-|..++ .||.|+.|.+++-.+.. ..-....++|+|..||+|+.+++.. ..++++++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 356777777665444444444443 46777777777765532 2223344677777777777777643 5567777777
Q ss_pred EEEeecccCCC-CCCccCCCCCCCCEEEccCCCCCCCC--c----hhhhCCCCCcEEEcccCcCccccchHHHhccccCc
Q 045209 173 QLKLGQNFLTG-AIPNGISQLKNLTYLDLQHNQLSGAI--P----DIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQ 245 (478)
Q Consensus 173 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 245 (478)
+|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.|++.+....-..+....|+|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 77776655442 12234666777777777765543221 1 11134677777777777766555444444334555
Q ss_pred EEE
Q 045209 246 YLK 248 (478)
Q Consensus 246 ~L~ 248 (478)
.+.
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 444
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=6.5e-07 Score=71.83 Aligned_cols=86 Identities=28% Similarity=0.420 Sum_probs=49.5
Q ss_pred cCCCCCCEEEeecccCCCCCCccC-CCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccC
Q 045209 166 SQLTQLTQLKLGQNFLTGAIPNGI-SQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQL 244 (478)
Q Consensus 166 ~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L 244 (478)
.....|+..+|++|.+. .+|..| ...+.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+. ++
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~-~l 125 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLI-KL 125 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHH-hH
Confidence 33445555666666665 334333 33446666666666666 44555666666666666666665 4555555543 55
Q ss_pred cEEEccCccCC
Q 045209 245 QYLKLGHNVLS 255 (478)
Q Consensus 245 ~~L~L~~n~l~ 255 (478)
-.|+..+|.+.
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 66666555554
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.88 E-value=4.1e-06 Score=75.05 Aligned_cols=230 Identities=19% Similarity=0.252 Sum_probs=147.3
Q ss_pred CCEEEEEcCCCCCCCCCccee----ecccccccCCCCCeeecCCCCCcccc----cC-------ccCCCCCCCCEEEccC
Q 045209 66 DRVTSLSLNGQPEKPNSFLSG----TISSSLVKVKNLGGIYLQDLGNISGN----FP-------DFISGLPELKYIYIEN 130 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~----~~-------~~l~~l~~L~~L~Ls~ 130 (478)
..++.++|+|+. +.. .+...+.+-++|+..++++ .++|. ++ ..+.+||+|+..+||+
T Consensus 30 d~~~evdLSGNt------igtEA~e~l~~~ia~~~~L~vvnfsd--~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 30 DELVEVDLSGNT------IGTEAMEELCNVIANVRNLRVVNFSD--AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred cceeEEeccCCc------ccHHHHHHHHHHHhhhcceeEeehhh--hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 457888888853 322 2344566677888888776 34443 22 3456788999999999
Q ss_pred CCCCCCCCcc----cCCCCCCCEEEeecCcCCCC----Cchh---------hcCCCCCCEEEeecccCCCCC----CccC
Q 045209 131 NKLSGQIPAN----IGKLTQLEALSFSGNRFTGP----IPSS---------ISQLTQLTQLKLGQNFLTGAI----PNGI 189 (478)
Q Consensus 131 n~~~~~~~~~----l~~l~~L~~L~L~~n~i~~~----~~~~---------~~~l~~L~~L~L~~n~l~~~~----~~~l 189 (478)
|.|....|.. ++.-..|++|.+++|.+... +.++ ...-|.|++.....|++..-- ...+
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 9887665543 45667889999988876422 1111 224577888888888876221 1123
Q ss_pred CCCCCCCEEEccCCCCCCCCch-----hhhCCCCCcEEEcccCcCccccc----hHHHhccccCcEEEccCccCCCCCCc
Q 045209 190 SQLKNLTYLDLQHNQLSGAIPD-----IFSSLKKLLFLTLSFNKFSGNIP----TSIASLAPQLQYLKLGHNVLSGKVPD 260 (478)
Q Consensus 190 ~~l~~L~~L~l~~n~l~~~~~~-----~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~ 260 (478)
..-..|+++.+..|.+...-.. .+..+++|+.||+..|.++.... ..+..+ +.|+.|.+.+|.++.....
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W-~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW-NLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc-chhhhccccchhhccccHH
Confidence 3335788888888888643211 23456789999999988763322 223344 3688899998877654332
Q ss_pred cc------CCCCCCCEEeccCCcCCccchhh-----h--cCCCCCCEEeccCCcCCC
Q 045209 261 FL------GKFHSLDTLDLSWNQFSGTLPKS-----F--SNLTKIFNLNLAYNSLTD 304 (478)
Q Consensus 261 ~l------~~l~~L~~L~L~~n~l~~~~~~~-----l--~~l~~L~~L~L~~n~l~~ 304 (478)
.+ ...++|..|...+|...+.+... + ..+|-|..|.+.+|++..
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 22 13577888888888765433221 1 356777788888888875
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=1.4e-05 Score=51.71 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=15.4
Q ss_pred CcEEECcCCcCcccCCCccCCCCCCEEECCCCcCc
Q 045209 388 LVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVF 422 (478)
Q Consensus 388 L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~ 422 (478)
|++|++++|+|+..++.+..+++|+.|++++|+|+
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 44444444444443333444555555555555443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=1.7e-05 Score=51.36 Aligned_cols=36 Identities=28% Similarity=0.595 Sum_probs=17.4
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCC
Q 045209 122 ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFT 158 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~ 158 (478)
+|++|++++|.|+ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33434555555555555555554
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.76 E-value=7.3e-07 Score=84.40 Aligned_cols=133 Identities=19% Similarity=0.196 Sum_probs=64.9
Q ss_pred CCCCcEEEcccCc-CccccchHHHhccccCcEEEccCcc-CCCCCCccc-CCCCCCCEEeccCCcCCcc--chhhhcCCC
Q 045209 216 LKKLLFLTLSFNK-FSGNIPTSIASLAPQLQYLKLGHNV-LSGKVPDFL-GKFHSLDTLDLSWNQFSGT--LPKSFSNLT 290 (478)
Q Consensus 216 l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~~--~~~~l~~l~ 290 (478)
...|+.|+.+++. +++..-..+....++|+.+-++.|+ ++...-..+ .+++.|+.+++..+..... +...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4556666666543 2222233344444566666666664 222111112 2455666666666543211 111223556
Q ss_pred CCCEEeccCCcCC-CC--CCc----cCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCC
Q 045209 291 KIFNLNLAYNSLT-DP--FPV----MNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCG 348 (478)
Q Consensus 291 ~L~~L~L~~n~l~-~~--~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 348 (478)
.|+.+.++++... +. ... .....|+.+.+++++.+....-..+..+++|+.+++.+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 6777777666443 21 111 1344566666666665433333445556666666555543
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00023 Score=69.32 Aligned_cols=136 Identities=18% Similarity=0.291 Sum_probs=76.8
Q ss_pred CCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecc-cCCCCCCccCCCCCCC
Q 045209 117 ISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQN-FLTGAIPNGISQLKNL 195 (478)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L 195 (478)
+..+.++++|++++|.++ .+|. -.++|++|.++++.--..+|..+ .++|+.|++++| .+. .+|. .|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence 445688999999999877 5552 22368889988754323555544 257888888887 443 4443 46
Q ss_pred CEEEccCCCCCCCCchhhhCC-CCCcEEEcccCc-Cc-cccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEe
Q 045209 196 TYLDLQHNQLSGAIPDIFSSL-KKLLFLTLSFNK-FS-GNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLD 272 (478)
Q Consensus 196 ~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~-l~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 272 (478)
+.|++..+.... +..+ ++|+.|.+.+++ .. ..+|. .++++|++|++++|... ..|..+. .+|+.|+
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 667776554421 1122 245666664322 10 01111 12247777777777654 2333222 4677777
Q ss_pred ccCC
Q 045209 273 LSWN 276 (478)
Q Consensus 273 L~~n 276 (478)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7655
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00046 Score=67.22 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=73.1
Q ss_pred CCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEE
Q 045209 263 GKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSL 342 (478)
Q Consensus 263 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 342 (478)
..+.+++.|++++|.++ .+|. -..+|++|.++++.--...+...+++|++|++++|.. ...+|. .|+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~-L~sLP~------sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPE-ISGLPE------SVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccc-cccccc------ccceE
Confidence 34577788888888766 4451 2246788888765332223333346788888877732 133443 46666
Q ss_pred EccCCCCcccCCCCccccccCCcEEEccCCc-ccc-cCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCc
Q 045209 343 KLAKCGIKMNLNNWKPAQTYFYDYIDLSENE-ISG-GPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNL 420 (478)
Q Consensus 343 ~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~ 420 (478)
++..+... .++.. +..|+.|.+.+++ ... ..+..+ -++|++|++++|.....++.+. .+|+.|+++.|.
T Consensus 118 ~L~~n~~~-~L~~L----PssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 118 EIKGSATD-SIKNV----PNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred EeCCCCCc-ccccC----cchHhheecccccccccccccccc--CCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 66655432 11111 1125666664322 111 111111 1467778877777554443332 577777777663
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=0.00012 Score=63.12 Aligned_cols=102 Identities=25% Similarity=0.215 Sum_probs=61.6
Q ss_pred cCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCC---CCCccCcCCCCEEEc
Q 045209 243 QLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTD---PFPVMNVKGIESLDL 319 (478)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~~~~~L~~L~l 319 (478)
....++|++|.+.. .+.|..++.|..|.+++|.++.+.|.--.-+++|+.|.+.+|.+.. ..+...++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 55666777776642 2345667777777777777776555444455677777777776653 445556677777777
Q ss_pred cCCCCCCCCC--CccccCCCCccEEEccC
Q 045209 320 SYNQFHLQQI--PSWVTSSPIIFSLKLAK 346 (478)
Q Consensus 320 ~~n~l~~~~~--~~~~~~~~~L~~L~l~~ 346 (478)
-+|+.+...- --.+..+|+|+.||++.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777531110 01244556666666653
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.59 E-value=0.00011 Score=63.35 Aligned_cols=102 Identities=24% Similarity=0.271 Sum_probs=48.3
Q ss_pred CCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCC-CcccCCCCCCCEEec
Q 045209 195 LTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKV-PDFLGKFHSLDTLDL 273 (478)
Q Consensus 195 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L 273 (478)
...+|+++|.+.. -..|..++.|.+|.+++|+|+ .+...+....|+|..|.+.+|.+.... .+-+..++.|+.|.+
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3445555555431 123444555555555555555 343444444455566666555544211 122345556666666
Q ss_pred cCCcCCccch---hhhcCCCCCCEEeccC
Q 045209 274 SWNQFSGTLP---KSFSNLTKIFNLNLAY 299 (478)
Q Consensus 274 ~~n~l~~~~~---~~l~~l~~L~~L~L~~ 299 (478)
-+|..+..-- ..+..+++|+.||++.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 5555542110 1234455555555544
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=4.5e-05 Score=80.21 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=52.4
Q ss_pred CCCCEEEeecccCCCC-CCccC-CCCCCCCEEEccCCCCCCC-CchhhhCCCCCcEEEcccCcCccccchHHHhccccCc
Q 045209 169 TQLTQLKLGQNFLTGA-IPNGI-SQLKNLTYLDLQHNQLSGA-IPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQ 245 (478)
Q Consensus 169 ~~L~~L~L~~n~l~~~-~~~~l-~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 245 (478)
.+|++|++++...-.. .+..+ ..+|.|+.|.+.+-.+... ......++++|..||+|+.+++ .+ ..+..+. +|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~Lk-nLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLK-NLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccc-cHH
Confidence 4566777766433211 11122 2356666666665444321 2233455666666666666654 22 3444443 666
Q ss_pred EEEccCccCCC-CCCcccCCCCCCCEEeccCCcC
Q 045209 246 YLKLGHNVLSG-KVPDFLGKFHSLDTLDLSWNQF 278 (478)
Q Consensus 246 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l 278 (478)
.|.+.+-.+.. ..-..+..+++|+.||+|....
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 66555544442 1112334555666666655443
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.40 E-value=5.1e-06 Score=78.78 Aligned_cols=232 Identities=17% Similarity=0.110 Sum_probs=106.5
Q ss_pred CCCCeeecCCCCCccccc-CccCCCCCCCCEEEccCCC-CCCCCCccc-CCCCCCCEEEeecC-cCCCCCch-hhcCCCC
Q 045209 96 KNLGGIYLQDLGNISGNF-PDFISGLPELKYIYIENNK-LSGQIPANI-GKLTQLEALSFSGN-RFTGPIPS-SISQLTQ 170 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~Ls~n~-~~~~~~~~l-~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~ 170 (478)
..|+.|.++++......- -..-.+++++++|++.++. ++...-..+ ..+++|+++++..+ .++...-+ .-..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 456777777663332221 1223456777777776665 221111112 23566666666663 33332222 1234566
Q ss_pred CCEEEeeccc-CCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCc-cccchHHHhccccCcEEE
Q 045209 171 LTQLKLGQNF-LTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFS-GNIPTSIASLAPQLQYLK 248 (478)
Q Consensus 171 L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~ 248 (478)
|++|+++++. +++. . +...+.+...++.+.+.++.=. .+.-.......+.+.+++
T Consensus 218 L~~lNlSwc~qi~~~-------------------g----v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGN-------------------G----VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred HHHhhhccCchhhcC-------------------c----chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence 6666666553 2210 0 0111222333444433332100 000011111112344555
Q ss_pred ccCcc-CCCCCC-cccCCCCCCCEEeccCCcCCcc-chhhh-cCCCCCCEEeccCCcC-CCC--CC-ccCcCCCCEEEcc
Q 045209 249 LGHNV-LSGKVP-DFLGKFHSLDTLDLSWNQFSGT-LPKSF-SNLTKIFNLNLAYNSL-TDP--FP-VMNVKGIESLDLS 320 (478)
Q Consensus 249 L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~l~~~-~~~~l-~~l~~L~~L~L~~n~l-~~~--~~-~~~~~~L~~L~l~ 320 (478)
+.+|. ++...- ..-..+..|+.|+.+++...+. .-..+ .+..+|+.+-++.++. ++. .. ....+.|+.+++.
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 54542 221110 0112456677777776543222 22222 4567788888877753 321 11 1256678888887
Q ss_pred CCCCCCCC-CCccccCCCCccEEEccCCCCc
Q 045209 321 YNQFHLQQ-IPSWVTSSPIIFSLKLAKCGIK 350 (478)
Q Consensus 321 ~n~l~~~~-~~~~~~~~~~L~~L~l~~n~l~ 350 (478)
.+...... +...-..++.|+.+.+++|...
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~i 385 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELI 385 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhh
Confidence 77653221 3333456777777777766543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.0002 Score=64.29 Aligned_cols=62 Identities=27% Similarity=0.365 Sum_probs=28.5
Q ss_pred CCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecC--cCCCCCchhhcCCCCCCEEEeecccCC
Q 045209 119 GLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGN--RFTGPIPSSISQLTQLTQLKLGQNFLT 182 (478)
Q Consensus 119 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~ 182 (478)
.+..|+.|++.+..++.. ..+..+++|++|.++.| .+.+.++.....+++|+++++++|++.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344444555444444311 12334555555555555 333333333334455555555555544
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.14 E-value=0.0013 Score=54.04 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=28.4
Q ss_pred cccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCC
Q 045209 92 LVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQL 171 (478)
Q Consensus 92 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 171 (478)
+.++++|+.+.+.. .+...-...|.++++|+.+.+.++ +.......|.+++.++.+.+.. .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 34444555555442 222222333444555555555443 3322223344444455555533 2221222333444445
Q ss_pred CEEEee
Q 045209 172 TQLKLG 177 (478)
Q Consensus 172 ~~L~L~ 177 (478)
+.+++.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 544443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.93 E-value=0.0027 Score=52.07 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=43.4
Q ss_pred cCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCC
Q 045209 116 FISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNL 195 (478)
Q Consensus 116 ~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 195 (478)
.|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +.......|.++++++.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455666666666653 344333445556666666666553 4433334455555666666643 3222223345555666
Q ss_pred CEEEccCCCCCCCCchhhhCCCCCcEEEcc
Q 045209 196 TYLDLQHNQLSGAIPDIFSSLKKLLFLTLS 225 (478)
Q Consensus 196 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 225 (478)
+.+.+..+ +.......|.+. +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 66665443 332233344443 55555544
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00071 Score=60.85 Aligned_cols=111 Identities=23% Similarity=0.263 Sum_probs=68.0
Q ss_pred CCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecc--cCCCCCCccCCCCCCCCEEEccCCCCCCC-Cchhh
Q 045209 137 IPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQN--FLTGAIPNGISQLKNLTYLDLQHNQLSGA-IPDIF 213 (478)
Q Consensus 137 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l 213 (478)
+..-...+..|+.+++.+..++.. ..+-.+++|++|.++.| ++.+.++.-...+++|+++++++|++... --..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 333344455666666666666522 33556788899999888 55555555556668888888888888631 11233
Q ss_pred hCCCCCcEEEcccCcCcccc--chHHHhccccCcEEEc
Q 045209 214 SSLKKLLFLTLSFNKFSGNI--PTSIASLAPQLQYLKL 249 (478)
Q Consensus 214 ~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~L 249 (478)
..+.+|..|++.+|..+... -..++.+.++|++|+-
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 45667778888777655311 1234455556666653
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.00011 Score=66.46 Aligned_cols=99 Identities=23% Similarity=0.239 Sum_probs=55.4
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCC-CccCCCCCCCCEEE
Q 045209 121 PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAI-PNGISQLKNLTYLD 199 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 199 (478)
.+.+.|+.-++.+.++ .....++.|++|.|+-|+|+.. ..+..+++|++|+|..|.|.... -..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445555555555432 1133566666666766666633 23566667777777766665221 12355666777777
Q ss_pred ccCCCCCCCCch-----hhhCCCCCcEEE
Q 045209 200 LQHNQLSGAIPD-----IFSSLKKLLFLT 223 (478)
Q Consensus 200 l~~n~l~~~~~~-----~l~~l~~L~~L~ 223 (478)
|..|.-.+.-+. .+..+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 776666554332 344566666664
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.37 E-value=0.0004 Score=71.06 Aligned_cols=63 Identities=22% Similarity=0.118 Sum_probs=30.4
Q ss_pred CCCCCCEEEeeccc-CCCCCCccCC-CCCCCCEEEccCCC-CCCC-CchhhhCCCCCcEEEcccCcC
Q 045209 167 QLTQLTQLKLGQNF-LTGAIPNGIS-QLKNLTYLDLQHNQ-LSGA-IPDIFSSLKKLLFLTLSFNKF 229 (478)
Q Consensus 167 ~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l 229 (478)
.+.+|+.|+++.+. ++...-..+. .+++|++|.+..+. ++.. +......++.|++|+++++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34556666666655 3322222222 25566666655554 3322 122234455666666665543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.00067 Score=61.43 Aligned_cols=101 Identities=21% Similarity=0.242 Sum_probs=61.9
Q ss_pred CCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCc-hhhhCCCCCcEE
Q 045209 144 LTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIP-DIFSSLKKLLFL 222 (478)
Q Consensus 144 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L 222 (478)
+.+.+.|++.++.++++ .....++.|++|.|+-|+|+.. ..+..+++|++|+|..|.|..... ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556677777777643 2345677777777777777633 236677777777777777764321 345667777777
Q ss_pred EcccCcCccccchH----HHhccccCcEEE
Q 045209 223 TLSFNKFSGNIPTS----IASLAPQLQYLK 248 (478)
Q Consensus 223 ~L~~n~l~~~~~~~----~~~~~~~L~~L~ 248 (478)
.|..|...|.-+.. .....|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777665554432 222335666664
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.61 E-value=0.0039 Score=33.54 Aligned_cols=11 Identities=55% Similarity=0.625 Sum_probs=4.7
Q ss_pred CCEEECCCCcC
Q 045209 411 LKVLDLSRNLV 421 (478)
Q Consensus 411 L~~L~Ls~N~l 421 (478)
|++|||++|+|
T Consensus 2 L~~Ldls~n~l 12 (22)
T PF00560_consen 2 LEYLDLSGNNL 12 (22)
T ss_dssp ESEEEETSSEE
T ss_pred ccEEECCCCcC
Confidence 34444444444
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.33 E-value=0.0028 Score=64.80 Aligned_cols=130 Identities=25% Similarity=0.135 Sum_probs=67.4
Q ss_pred CCCCCEEEeecccCCCC--CCccCCCCCCCCEEEccCC-CCCCCC----chhhhCCCCCcEEEcccCc-CccccchHHHh
Q 045209 168 LTQLTQLKLGQNFLTGA--IPNGISQLKNLTYLDLQHN-QLSGAI----PDIFSSLKKLLFLTLSFNK-FSGNIPTSIAS 239 (478)
Q Consensus 168 l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 239 (478)
.+.|+.+.+..+.-... .-.....++.|+.|+++++ ...... ......+++|+.|+++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532212 1233455666777776652 111111 1223345667777777666 55444444555
Q ss_pred ccccCcEEEccCcc-CCCCCCc-ccCCCCCCCEEeccCCcCCcc--chhhhcCCCCCCEEec
Q 045209 240 LAPQLQYLKLGHNV-LSGKVPD-FLGKFHSLDTLDLSWNQFSGT--LPKSFSNLTKIFNLNL 297 (478)
Q Consensus 240 ~~~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L 297 (478)
..++|++|.+.+|. ++...-. ....++.|++|+++++..... +......+++++.+.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 45577777766665 4433222 223566777777777654311 2223344666665543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.09 E-value=0.019 Score=30.83 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=5.8
Q ss_pred CCEEEccCCCCC
Q 045209 123 LKYIYIENNKLS 134 (478)
Q Consensus 123 L~~L~Ls~n~~~ 134 (478)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444555555444
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.31 E-value=0.0012 Score=66.63 Aligned_cols=135 Identities=27% Similarity=0.269 Sum_probs=62.9
Q ss_pred CCCEEEeecccCCCC----CCccCCCCCCCCEEEccCCCCCCC----Cchhhh----CCCCCcEEEcccCcCccccch--
Q 045209 170 QLTQLKLGQNFLTGA----IPNGISQLKNLTYLDLQHNQLSGA----IPDIFS----SLKKLLFLTLSFNKFSGNIPT-- 235 (478)
Q Consensus 170 ~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~----~l~~L~~L~L~~n~l~~~~~~-- 235 (478)
.+++|++..|.++.. +...+.....++.++++.|.+... ++..+. ...++++|+++++.++...-.
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 344455555544422 223344445555555555554211 122222 345566666666655421111
Q ss_pred --HHHhccccCcEEEccCccCCCC----CCcccCCC-CCCCEEeccCCcCCccch----hhhcCCCCCCEEeccCCcCCC
Q 045209 236 --SIASLAPQLQYLKLGHNVLSGK----VPDFLGKF-HSLDTLDLSWNQFSGTLP----KSFSNLTKIFNLNLAYNSLTD 304 (478)
Q Consensus 236 --~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~ 304 (478)
.+......+..+++..|.+.+. ....+..+ ..+++++++.|.+++... ..+..+++++.+.++.|.+.+
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1111111244466666655432 11223333 456666777666654332 334455666666666666654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.24 E-value=0.072 Score=26.49 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=4.4
Q ss_pred CCCEEECCCCcC
Q 045209 410 TLKVLDLSRNLV 421 (478)
Q Consensus 410 ~L~~L~Ls~N~l 421 (478)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344455555444
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.23 E-value=0.0018 Score=65.34 Aligned_cols=179 Identities=26% Similarity=0.286 Sum_probs=104.4
Q ss_pred CCEEEeecCcCCCC----CchhhcCCCCCCEEEeecccCCCCC----CccCCCC-CCCCEEEccCCCCCCC----Cchhh
Q 045209 147 LEALSFSGNRFTGP----IPSSISQLTQLTQLKLGQNFLTGAI----PNGISQL-KNLTYLDLQHNQLSGA----IPDIF 213 (478)
Q Consensus 147 L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l 213 (478)
+..+.|.+|.+... +-..+...+.|+.|++++|.+.+.. -..+... ..+++|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 34444444444432 2233445666777777777765321 1223332 5677788888877654 44556
Q ss_pred hCCCCCcEEEcccCcCcc----ccchHHHh---ccccCcEEEccCccCCCCCC----cccCCCCC-CCEEeccCCcCCcc
Q 045209 214 SSLKKLLFLTLSFNKFSG----NIPTSIAS---LAPQLQYLKLGHNVLSGKVP----DFLGKFHS-LDTLDLSWNQFSGT 281 (478)
Q Consensus 214 ~~l~~L~~L~L~~n~l~~----~~~~~~~~---~~~~L~~L~L~~n~l~~~~~----~~l~~l~~-L~~L~L~~n~l~~~ 281 (478)
.....++.++++.|.+.. .++..+.. ...++++|++.+|.++.... ..+...+. +..+++..|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667889999999887731 12223332 22378888888887763221 22334444 66688888877643
Q ss_pred c----hhhhcCC-CCCCEEeccCCcCCCCCCc------cCcCCCCEEEccCCCCC
Q 045209 282 L----PKSFSNL-TKIFNLNLAYNSLTDPFPV------MNVKGIESLDLSYNQFH 325 (478)
Q Consensus 282 ~----~~~l~~l-~~L~~L~L~~n~l~~~~~~------~~~~~L~~L~l~~n~l~ 325 (478)
. .+.+... +.++.++++.|.+++.... ..++.++++.+++|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2 2234444 5677888888888753222 24557788888888764
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.57 E-value=0.13 Score=28.79 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=8.6
Q ss_pred CCCeeeccCCcccccCCCC
Q 045209 431 GLDKLNVSFNNLCGEIPKT 449 (478)
Q Consensus 431 ~L~~L~ls~N~l~~~ip~~ 449 (478)
+|++|+|++|+++ .+|.+
T Consensus 3 ~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCEEECCCCcCC-cCCHH
Confidence 4455555555554 44443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.57 E-value=0.13 Score=28.79 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=8.6
Q ss_pred CCCeeeccCCcccccCCCC
Q 045209 431 GLDKLNVSFNNLCGEIPKT 449 (478)
Q Consensus 431 ~L~~L~ls~N~l~~~ip~~ 449 (478)
+|++|+|++|+++ .+|.+
T Consensus 3 ~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCEEECCCCcCC-cCCHH
Confidence 4455555555554 44443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.03 E-value=0.082 Score=46.03 Aligned_cols=33 Identities=30% Similarity=0.287 Sum_probs=15.0
Q ss_pred ccCcEEEccCc-cCCCCCCcccCCCCCCCEEecc
Q 045209 242 PQLQYLKLGHN-VLSGKVPDFLGKFHSLDTLDLS 274 (478)
Q Consensus 242 ~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~ 274 (478)
++|+.|++++| .||......+..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 45555555544 3343333344444455544443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.90 E-value=0.47 Score=26.38 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=12.0
Q ss_pred CCCCCEEECCCCcCcccC
Q 045209 408 VKTLKVLDLSRNLVFGKL 425 (478)
Q Consensus 408 l~~L~~L~Ls~N~l~~~~ 425 (478)
+++|+.|+|++|+|....
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 356777777777775443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.90 E-value=0.47 Score=26.38 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=12.0
Q ss_pred CCCCCEEECCCCcCcccC
Q 045209 408 VKTLKVLDLSRNLVFGKL 425 (478)
Q Consensus 408 l~~L~~L~Ls~N~l~~~~ 425 (478)
+++|+.|+|++|+|....
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 356777777777775443
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.34 E-value=0.021 Score=50.71 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=55.3
Q ss_pred CCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCC
Q 045209 117 ISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLT 196 (478)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 196 (478)
+..+.+.+.||++.|.+. .+-..|.-++.|+.|+++.|.+. ..|+.+..+..++.+++..|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344556666777666654 33344555666677777777666 56666666666666776666655 5566677777777
Q ss_pred EEEccCCCCC
Q 045209 197 YLDLQHNQLS 206 (478)
Q Consensus 197 ~L~l~~n~l~ 206 (478)
++++..|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7776666543
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.12 E-value=0.32 Score=26.49 Aligned_cols=18 Identities=44% Similarity=0.468 Sum_probs=8.7
Q ss_pred CCCCEEeccCCcCCccch
Q 045209 266 HSLDTLDLSWNQFSGTLP 283 (478)
Q Consensus 266 ~~L~~L~L~~n~l~~~~~ 283 (478)
++|++|++++|++++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 455666666666554433
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.24 E-value=0.092 Score=46.73 Aligned_cols=86 Identities=26% Similarity=0.258 Sum_probs=42.7
Q ss_pred CCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCC
Q 045209 189 ISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSL 268 (478)
Q Consensus 189 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 268 (478)
+......+.||++.|++. .....|..++.+..|+++.|.+. ..|..+...- .++.+++..|..+ ..|.+++..+++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~-e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQR-ETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHH-HHHHHHhhccchh-hCCccccccCCc
Confidence 334445555555555544 23334444455555555555554 4444444432 4444555555444 445555555555
Q ss_pred CEEeccCCcC
Q 045209 269 DTLDLSWNQF 278 (478)
Q Consensus 269 ~~L~L~~n~l 278 (478)
+.+++.+|.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 5555555543
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.13 E-value=2.2 Score=23.90 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=8.7
Q ss_pred CCCCEEECCCCcCc
Q 045209 409 KTLKVLDLSRNLVF 422 (478)
Q Consensus 409 ~~L~~L~Ls~N~l~ 422 (478)
.+|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666663
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.73 E-value=0.38 Score=41.99 Aligned_cols=79 Identities=18% Similarity=0.085 Sum_probs=49.0
Q ss_pred CCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCC----CccCcCCCCEEEccCCC-CCCCCCCccccCCCCccE
Q 045209 267 SLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPF----PVMNVKGIESLDLSYNQ-FHLQQIPSWVTSSPIIFS 341 (478)
Q Consensus 267 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~ 341 (478)
.++.+|-++..+..+.-+-+.+++.++.|.+.++.--+.- -....++|+.|++++|+ || ..--.++..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhHH
Confidence 4667777777776666666777777777777777543210 01155678888888774 32 223344566677777
Q ss_pred EEccC
Q 045209 342 LKLAK 346 (478)
Q Consensus 342 L~l~~ 346 (478)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 76653
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.46 E-value=1.7 Score=24.22 Aligned_cols=17 Identities=47% Similarity=0.710 Sum_probs=11.2
Q ss_pred CCCeeeccCCcccccCCC
Q 045209 431 GLDKLNVSFNNLCGEIPK 448 (478)
Q Consensus 431 ~L~~L~ls~N~l~~~ip~ 448 (478)
+|+.|++++|+++ .+|.
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4667777777775 5553
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.71 E-value=34 Score=34.28 Aligned_cols=18 Identities=39% Similarity=0.364 Sum_probs=9.6
Q ss_pred CcEEEcccCcCccccchH
Q 045209 219 LLFLTLSFNKFSGNIPTS 236 (478)
Q Consensus 219 L~~L~L~~n~l~~~~~~~ 236 (478)
+.+++++.|.....+|..
T Consensus 216 lteldls~n~~Kddip~~ 233 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRT 233 (553)
T ss_pred ccccccccCCCCccchhH
Confidence 555566655555455443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.72 E-value=4.7 Score=22.85 Aligned_cols=14 Identities=43% Similarity=0.458 Sum_probs=9.3
Q ss_pred CCCCEEECCCCcCc
Q 045209 409 KTLKVLDLSRNLVF 422 (478)
Q Consensus 409 ~~L~~L~Ls~N~l~ 422 (478)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777764
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.71 E-value=16 Score=36.39 Aligned_cols=58 Identities=22% Similarity=0.179 Sum_probs=35.6
Q ss_pred CcEEEccCCcccccCc---cccccCCCCcEEECcCCcCcccC-----CCccCCCCCCEEECCCCcC
Q 045209 364 YDYIDLSENEISGGPV---ELLNRTDYLVEFRASGSKLKFNM-----DSLRIVKTLKVLDLSRNLV 421 (478)
Q Consensus 364 L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~ls~n~l~~~~-----~~~~~l~~L~~L~Ls~N~l 421 (478)
+..+.++.+.+.-... ..+..-+.+..|++++|...... ...+...+++.+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 4667777776654432 23344567889999998876422 2344445666666666655
No 91
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=62.61 E-value=3.9 Score=29.68 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHhh
Q 045209 1 MKFFLYFPLIFLSFS 15 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (478)
||+-.+++++++++.
T Consensus 1 mKLt~vliVavLllt 15 (75)
T PF02950_consen 1 MKLTCVLIVAVLLLT 15 (75)
T ss_dssp ---------------
T ss_pred CCcchHHHHHHHHHH
Confidence 899767666666666
No 92
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=57.57 E-value=7.2 Score=18.25 Aligned_cols=11 Identities=27% Similarity=1.011 Sum_probs=8.2
Q ss_pred CCCCCCcCccC
Q 045209 467 LPSSSCKCVCG 477 (478)
Q Consensus 467 ~~~~~~~~~~~ 477 (478)
.....|.|.|.
T Consensus 4 wn~~tC~C~Cp 14 (14)
T PF03128_consen 4 WNDDTCQCECP 14 (14)
T ss_pred ecCCCcCccCC
Confidence 45677999985
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.86 E-value=25 Score=35.94 Aligned_cols=63 Identities=32% Similarity=0.375 Sum_probs=30.0
Q ss_pred CCCCCcEEEcccCcCcccc-chHHHhccccCcEEEccCc--cCCCCCCcccCC--CCCCCEEeccCCcCC
Q 045209 215 SLKKLLFLTLSFNKFSGNI-PTSIASLAPQLQYLKLGHN--VLSGKVPDFLGK--FHSLDTLDLSWNQFS 279 (478)
Q Consensus 215 ~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~--l~~L~~L~L~~n~l~ 279 (478)
+.+.+..++|++|++.... ..++....|+|+.|+|++| .+.. ..++.+ ...|++|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 3455666666666554110 1223333456666666666 2221 112222 234566666666654
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=35.02 E-value=31 Score=18.89 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=5.4
Q ss_pred CCCCEEEccCC
Q 045209 121 PELKYIYIENN 131 (478)
Q Consensus 121 ~~L~~L~Ls~n 131 (478)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34455555544
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.79 E-value=28 Score=35.54 Aligned_cols=63 Identities=29% Similarity=0.299 Sum_probs=28.5
Q ss_pred CCCCCEEEccCCCCCCC--CchhhhCCCCCcEEEcccC--cCccccchHHHhc-cccCcEEEccCccCCC
Q 045209 192 LKNLTYLDLQHNQLSGA--IPDIFSSLKKLLFLTLSFN--KFSGNIPTSIASL-APQLQYLKLGHNVLSG 256 (478)
Q Consensus 192 l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~~-~~~L~~L~L~~n~l~~ 256 (478)
.+.+..+++++|++... +...-...|+|++|+|++| .+. ...++.+. ...|++|-+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 34555555666655422 1111233456666666666 222 11111111 0255666666666553
No 96
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=25.77 E-value=48 Score=16.61 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=6.5
Q ss_pred CchhHHHHHHHH
Q 045209 1 MKFFLYFPLIFL 12 (478)
Q Consensus 1 ~~~~~~~~~~~~ 12 (478)
||+...++++++
T Consensus 2 Mk~vIIlvvLLl 13 (19)
T PF13956_consen 2 MKLVIILVVLLL 13 (19)
T ss_pred ceehHHHHHHHh
Confidence 666655554443
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.47 E-value=46 Score=40.98 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=27.7
Q ss_pred EccCCcccccCccccccCCCCcEEECcCCcCcc
Q 045209 368 DLSENEISGGPVELLNRTDYLVEFRASGSKLKF 400 (478)
Q Consensus 368 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 400 (478)
||++|+|..+.+..|..+++|++|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578888888888888888889999999888763
Done!