Query 045209
Match_columns 478
No_of_seqs 482 out of 4244
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 19:14:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.1E-57 1.8E-61 485.1 39.5 445 18-468 5-746 (768)
2 4eco_A Uncharacterized protein 100.0 2.8E-52 9.7E-57 438.6 30.0 426 22-464 27-602 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 3.1E-50 1E-54 430.8 31.8 419 20-462 264-840 (876)
4 3rgz_A Protein brassinosteroid 100.0 6.4E-44 2.2E-48 383.3 23.5 360 82-445 304-743 (768)
5 3t6q_A CD180 antigen; protein- 100.0 1.3E-41 4.6E-46 356.6 34.6 374 65-447 32-517 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 3.5E-42 1.2E-46 373.5 29.4 405 54-467 13-565 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-41 5.1E-46 356.3 31.4 390 65-466 31-562 (606)
8 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-41 5E-46 352.1 28.8 194 54-256 3-210 (549)
9 3t6q_A CD180 antigen; protein- 100.0 3.4E-40 1.2E-44 345.9 35.4 275 189-466 274-564 (606)
10 4eco_A Uncharacterized protein 100.0 2E-41 6.8E-46 356.1 24.4 352 81-444 192-601 (636)
11 1ogq_A PGIP-2, polygalacturona 100.0 5.8E-42 2E-46 329.2 17.3 293 20-323 1-302 (313)
12 3v47_A TOLL-like receptor 5B a 100.0 1.3E-39 4.3E-44 329.7 29.6 351 96-449 30-414 (455)
13 2z63_A TOLL-like receptor 4, v 100.0 2.2E-39 7.4E-44 337.3 30.2 389 65-466 27-535 (570)
14 4ecn_A Leucine-rich repeat pro 100.0 3.2E-40 1.1E-44 353.4 23.3 351 82-445 435-842 (876)
15 1ziw_A TOLL-like receptor 3; i 100.0 2E-38 6.8E-43 337.0 35.0 376 65-449 24-498 (680)
16 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-38 1.2E-42 335.1 35.3 137 329-466 472-626 (680)
17 3vq2_A TLR4, TOLL-like recepto 100.0 5.5E-39 1.9E-43 336.8 27.6 347 96-449 32-516 (606)
18 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-39 1.6E-43 349.1 27.3 374 66-449 48-566 (844)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-38 3.9E-43 328.2 25.1 379 65-464 20-483 (520)
20 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-38 1.2E-42 326.6 27.3 189 87-280 19-210 (549)
21 2z63_A TOLL-like receptor 4, v 100.0 1.7E-37 5.9E-42 323.0 28.7 388 66-466 52-560 (570)
22 3v47_A TOLL-like receptor 5B a 100.0 8.2E-38 2.8E-42 316.4 23.3 365 53-427 6-413 (455)
23 3o6n_A APL1; leucine-rich repe 100.0 3.4E-37 1.2E-41 305.5 23.9 374 45-468 3-380 (390)
24 3oja_B Anopheles plasmodium-re 100.0 4.8E-37 1.7E-41 320.9 26.2 375 40-467 4-385 (597)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-36 5.7E-41 314.9 29.3 386 57-464 43-512 (562)
26 4g8a_A TOLL-like receptor 4; l 100.0 7.6E-36 2.6E-40 314.3 32.4 392 66-465 52-583 (635)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.8E-36 2E-40 310.8 29.5 361 66-448 76-515 (562)
28 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-37 8.1E-42 318.4 17.9 360 69-449 3-439 (520)
29 1o6v_A Internalin A; bacterial 100.0 7.1E-35 2.4E-39 295.6 34.9 346 66-448 46-392 (466)
30 2id5_A Lingo-1, leucine rich r 100.0 1.1E-34 3.9E-39 295.1 27.0 318 99-424 14-335 (477)
31 2id5_A Lingo-1, leucine rich r 100.0 8.5E-35 2.9E-39 296.1 25.4 331 96-430 32-364 (477)
32 3bz5_A Internalin-J, INLJ; leu 100.0 4.9E-34 1.7E-38 287.7 29.8 338 66-451 42-395 (457)
33 1o6v_A Internalin A; bacterial 100.0 2.2E-33 7.6E-38 284.6 33.6 322 66-423 68-389 (466)
34 1jl5_A Outer protein YOPM; leu 100.0 4E-34 1.4E-38 288.1 26.3 251 66-351 11-291 (454)
35 4g8a_A TOLL-like receptor 4; l 100.0 5.7E-33 2E-37 292.3 33.6 379 96-477 52-584 (635)
36 4fmz_A Internalin; leucine ric 100.0 1.4E-32 4.9E-37 267.8 30.4 306 92-421 40-345 (347)
37 4fmz_A Internalin; leucine ric 100.0 2E-32 6.9E-37 266.8 30.0 305 117-443 40-346 (347)
38 1jl5_A Outer protein YOPM; leu 100.0 5.2E-32 1.8E-36 272.7 32.4 340 66-463 71-430 (454)
39 4fcg_A Uncharacterized protein 100.0 5.7E-34 2E-38 275.1 16.5 270 20-302 22-313 (328)
40 3o6n_A APL1; leucine-rich repe 100.0 2.5E-32 8.6E-37 270.5 24.8 305 120-464 44-354 (390)
41 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-31 8.1E-36 268.1 27.9 322 85-445 31-370 (457)
42 3oja_B Anopheles plasmodium-re 100.0 1.3E-31 4.6E-36 279.7 24.3 305 120-464 50-360 (597)
43 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-32 8.3E-37 262.1 15.7 248 122-373 51-302 (313)
44 2ft3_A Biglycan; proteoglycan, 100.0 7.4E-31 2.5E-35 254.1 25.3 242 97-352 34-279 (332)
45 1xku_A Decorin; proteoglycan, 100.0 5.2E-30 1.8E-34 247.9 30.2 223 121-352 52-278 (330)
46 1xku_A Decorin; proteoglycan, 100.0 9.6E-30 3.3E-34 246.1 27.5 285 122-441 32-330 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 5.1E-30 1.7E-34 248.2 24.8 284 122-441 34-331 (332)
48 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-33 5.7E-38 285.2 -4.5 370 66-444 3-441 (461)
49 1z7x_W Ribonuclease inhibitor; 100.0 8.6E-33 2.9E-37 280.0 -5.5 348 96-445 3-413 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 3.8E-28 1.3E-32 237.1 19.2 284 48-354 23-318 (353)
51 2z80_A TOLL-like receptor 2, v 100.0 3.8E-28 1.3E-32 237.2 15.0 278 121-426 31-318 (353)
52 3g06_A SSPH2 (leucine-rich rep 99.9 2E-26 6.9E-31 239.1 26.1 296 44-431 11-306 (622)
53 4fcg_A Uncharacterized protein 99.9 7.9E-27 2.7E-31 225.1 20.6 232 95-349 80-313 (328)
54 2z66_A Variable lymphocyte rec 99.9 3.5E-27 1.2E-31 225.6 16.7 230 190-447 49-291 (306)
55 2z66_A Variable lymphocyte rec 99.9 1.8E-27 6.1E-32 227.6 14.6 227 96-325 28-261 (306)
56 1wwl_A Monocyte differentiatio 99.9 2.3E-28 7.9E-33 234.4 8.2 265 45-324 21-308 (312)
57 3zyi_A Leucine-rich repeat-con 99.9 6.4E-26 2.2E-30 228.8 24.7 224 97-324 76-302 (452)
58 1wwl_A Monocyte differentiatio 99.9 2.9E-28 9.9E-33 233.7 5.5 248 93-376 40-310 (312)
59 3g06_A SSPH2 (leucine-rich rep 99.9 3.5E-25 1.2E-29 229.8 28.8 259 122-448 41-302 (622)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-26 5.9E-31 218.4 16.6 204 120-324 31-237 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 9.2E-26 3.2E-30 227.7 22.8 247 122-399 55-303 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 1.3E-25 4.5E-30 225.7 23.5 248 122-399 44-292 (440)
63 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-26 8.8E-31 217.2 16.7 222 148-399 14-238 (285)
64 3zyj_A Leucine-rich repeat-con 99.9 2.7E-25 9.1E-30 223.5 24.5 226 96-325 64-292 (440)
65 2o6q_A Variable lymphocyte rec 99.9 2.7E-25 9.2E-30 208.5 21.4 216 52-303 2-218 (270)
66 3o53_A Protein LRIM1, AGAP0063 99.9 6.6E-28 2.3E-32 231.7 3.5 237 143-394 32-270 (317)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-26 3.7E-31 223.3 4.2 248 84-345 22-270 (317)
68 3oja_A Leucine-rich immune mol 99.9 6.5E-26 2.2E-30 230.4 8.1 238 94-345 32-270 (487)
69 3oja_A Leucine-rich immune mol 99.9 4.4E-26 1.5E-30 231.6 6.3 236 120-394 33-270 (487)
70 3ogk_B Coronatine-insensitive 99.9 9.6E-28 3.3E-32 250.6 -8.2 346 94-445 110-528 (592)
71 3ogk_B Coronatine-insensitive 99.9 4.5E-27 1.6E-31 245.5 -3.3 328 94-424 162-528 (592)
72 2z62_A TOLL-like receptor 4, v 99.9 1.5E-23 5.2E-28 197.2 20.4 206 96-304 28-238 (276)
73 2z62_A TOLL-like receptor 4, v 99.9 3.4E-23 1.2E-27 194.8 19.1 207 121-353 28-240 (276)
74 2o6q_A Variable lymphocyte rec 99.9 2.9E-22 9.8E-27 187.8 22.5 199 122-324 17-217 (270)
75 2ast_B S-phase kinase-associat 99.9 1E-24 3.4E-29 211.3 3.9 265 53-332 35-312 (336)
76 3rfs_A Internalin B, repeat mo 99.9 5.3E-23 1.8E-27 193.0 15.0 208 117-335 37-244 (272)
77 4glp_A Monocyte differentiatio 99.9 9.8E-23 3.4E-27 195.0 16.8 226 95-325 63-307 (310)
78 1p9a_G Platelet glycoprotein I 99.9 6.1E-22 2.1E-26 187.4 19.3 202 92-302 6-207 (290)
79 1p9a_G Platelet glycoprotein I 99.9 7.2E-22 2.5E-26 186.9 19.1 201 117-324 6-207 (290)
80 3rfs_A Internalin B, repeat mo 99.9 2.6E-22 8.9E-27 188.3 15.3 203 92-307 37-239 (272)
81 3goz_A Leucine-rich repeat-con 99.9 7.9E-24 2.7E-28 207.2 3.9 221 102-323 4-264 (362)
82 2p1m_B Transport inhibitor res 99.9 2.1E-25 7.1E-30 233.0 -8.0 345 94-443 103-519 (594)
83 2xwt_C Thyrotropin receptor; s 99.9 5.1E-22 1.7E-26 182.6 15.7 196 97-300 32-236 (239)
84 3goz_A Leucine-rich repeat-con 99.9 1.3E-23 4.3E-28 205.7 4.8 252 149-424 2-299 (362)
85 2xwt_C Thyrotropin receptor; s 99.9 6.1E-22 2.1E-26 182.0 15.6 197 121-322 31-236 (239)
86 3m19_A Variable lymphocyte rec 99.9 1.3E-21 4.3E-26 181.3 17.0 159 122-281 36-194 (251)
87 2p1m_B Transport inhibitor res 99.9 4.6E-25 1.6E-29 230.4 -7.5 369 66-442 105-543 (594)
88 4glp_A Monocyte differentiatio 99.9 4.8E-22 1.7E-26 190.2 13.4 225 121-350 64-307 (310)
89 3m19_A Variable lymphocyte rec 99.9 6.2E-21 2.1E-25 176.7 19.0 179 122-304 15-193 (251)
90 2ca6_A RAN GTPase-activating p 99.9 1.5E-23 5.2E-28 207.0 1.3 236 114-351 25-317 (386)
91 1h6u_A Internalin H; cell adhe 99.9 4.1E-21 1.4E-25 183.4 18.1 191 119-324 39-229 (308)
92 2ast_B S-phase kinase-associat 99.9 1E-22 3.5E-27 197.1 7.1 197 98-300 49-257 (336)
93 2ca6_A RAN GTPase-activating p 99.9 4.2E-23 1.5E-27 203.8 2.7 237 87-325 23-316 (386)
94 1h6u_A Internalin H; cell adhe 99.9 1.6E-20 5.5E-25 179.3 18.8 195 213-423 37-231 (308)
95 2o6s_A Variable lymphocyte rec 99.8 1.5E-20 5.3E-25 168.8 16.5 163 96-267 28-190 (208)
96 4ay9_X Follicle-stimulating ho 99.8 1.8E-20 6.2E-25 182.3 14.5 181 96-279 30-215 (350)
97 4ay9_X Follicle-stimulating ho 99.8 1.4E-19 4.7E-24 176.1 18.3 228 113-347 24-256 (350)
98 3cvr_A Invasion plasmid antige 99.8 2E-20 6.9E-25 191.8 12.4 207 46-289 34-253 (571)
99 3cvr_A Invasion plasmid antige 99.8 2.4E-19 8.1E-24 183.9 15.7 186 218-431 60-252 (571)
100 3e6j_A Variable lymphocyte rec 99.8 6.7E-19 2.3E-23 160.5 16.7 165 47-233 11-175 (229)
101 2o6s_A Variable lymphocyte rec 99.8 6.5E-19 2.2E-23 158.2 15.3 164 120-291 27-190 (208)
102 4b8c_D Glucose-repressible alc 99.8 7.9E-20 2.7E-24 194.0 4.7 263 23-303 130-404 (727)
103 1h6t_A Internalin B; cell adhe 99.8 5.8E-18 2E-22 160.1 16.4 172 118-304 43-214 (291)
104 1h6t_A Internalin B; cell adhe 99.8 9.2E-18 3.1E-22 158.7 15.4 184 126-324 29-212 (291)
105 2v9t_B SLIT homolog 2 protein 99.8 9.6E-18 3.3E-22 151.8 14.7 150 125-278 15-164 (220)
106 2xot_A Amphoterin-induced prot 99.8 5.2E-18 1.8E-22 165.6 13.6 176 99-279 21-202 (361)
107 3e6j_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 149.0 17.8 153 124-281 22-174 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 1.5E-17 5.1E-22 150.5 15.0 152 124-279 14-166 (220)
109 1m9s_A Internalin B; cell inva 99.7 5.6E-18 1.9E-22 175.5 13.5 191 97-305 22-212 (605)
110 2v9t_B SLIT homolog 2 protein 99.7 1.4E-17 4.6E-22 150.8 14.3 153 148-304 14-166 (220)
111 1m9s_A Internalin B; cell inva 99.7 9.8E-18 3.4E-22 173.7 14.2 169 243-424 44-212 (605)
112 4ezg_A Putative uncharacterize 99.7 2E-17 6.8E-22 147.0 14.2 153 118-279 41-194 (197)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 3.8E-17 1.3E-21 147.8 15.9 138 96-234 32-170 (220)
114 2xot_A Amphoterin-induced prot 99.7 1.3E-17 4.6E-22 162.7 12.6 175 70-255 22-202 (361)
115 4ezg_A Putative uncharacterize 99.7 6.1E-17 2.1E-21 143.9 14.0 153 142-303 41-194 (197)
116 1xeu_A Internalin C; cellular 99.7 6E-17 2.1E-21 150.7 9.6 169 216-423 18-186 (263)
117 1xeu_A Internalin C; cellular 99.7 6.7E-17 2.3E-21 150.4 9.7 169 94-279 17-185 (263)
118 1dce_A Protein (RAB geranylger 99.7 1.5E-18 5.2E-23 178.7 -3.3 189 190-402 346-549 (567)
119 1dce_A Protein (RAB geranylger 99.7 9.1E-19 3.1E-23 180.3 -7.1 199 214-436 346-566 (567)
120 1w8a_A SLIT protein; signaling 99.7 7.8E-16 2.7E-20 136.1 12.6 113 122-234 30-143 (192)
121 2ell_A Acidic leucine-rich nuc 99.6 6.1E-16 2.1E-20 133.6 11.5 132 121-255 24-160 (168)
122 2ell_A Acidic leucine-rich nuc 99.6 1.8E-15 6.2E-20 130.6 12.1 133 95-230 23-160 (168)
123 4b8c_D Glucose-repressible alc 99.6 1.1E-16 3.9E-21 169.8 4.9 153 161-322 216-369 (727)
124 2je0_A Acidic leucine-rich nuc 99.6 9.9E-16 3.4E-20 129.5 9.1 108 121-230 17-126 (149)
125 1w8a_A SLIT protein; signaling 99.6 2.8E-15 9.7E-20 132.4 12.3 129 124-256 11-140 (192)
126 3sb4_A Hypothetical leucine ri 99.6 5.6E-16 1.9E-20 149.2 8.0 82 265-350 225-310 (329)
127 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 8.9E-20 126.9 9.8 128 95-225 16-148 (149)
128 2wfh_A SLIT homolog 2 protein 99.6 3.8E-14 1.3E-18 125.2 13.8 110 121-231 31-140 (193)
129 2wfh_A SLIT homolog 2 protein 99.6 3.7E-14 1.3E-18 125.2 13.6 126 124-255 13-139 (193)
130 2o6r_A Variable lymphocyte rec 99.6 7.7E-14 2.6E-18 121.4 15.0 114 121-234 28-141 (177)
131 2o6r_A Variable lymphocyte rec 99.5 6.5E-14 2.2E-18 121.9 13.6 129 123-255 9-137 (177)
132 3sb4_A Hypothetical leucine ri 99.5 1.3E-14 4.5E-19 139.6 6.3 101 216-319 225-328 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.5 5.2E-14 1.8E-18 122.4 8.4 132 92-229 15-152 (176)
134 4fdw_A Leucine rich hypothetic 99.5 3.1E-12 1.1E-16 126.0 22.0 266 95-399 112-383 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1E-13 3.5E-18 120.5 8.8 109 117-230 15-126 (176)
136 4fdw_A Leucine rich hypothetic 99.4 7.2E-12 2.5E-16 123.3 21.5 246 89-349 129-382 (401)
137 1ds9_A Outer arm dynein; leuci 99.4 2.4E-15 8.1E-20 133.7 -3.1 132 164-303 43-185 (198)
138 1ds9_A Outer arm dynein; leuci 99.4 1.3E-15 4.3E-20 135.4 -5.4 136 92-233 14-156 (198)
139 3g39_A Variable lymphocyte rec 99.4 1.3E-12 4.4E-17 112.8 12.5 107 123-232 11-117 (170)
140 2r9u_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 111.0 13.2 104 124-230 15-118 (174)
141 3g39_A Variable lymphocyte rec 99.3 8.7E-12 3E-16 107.6 13.0 106 100-209 13-118 (170)
142 4fs7_A Uncharacterized protein 99.3 5.6E-11 1.9E-15 117.1 19.5 219 91-321 66-285 (394)
143 2r9u_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 106.1 12.4 95 112-208 26-120 (174)
144 4fs7_A Uncharacterized protein 99.3 1.3E-10 4.4E-15 114.5 20.2 302 67-418 72-375 (394)
145 3un9_A NLR family member X1; l 99.2 2.1E-12 7.2E-17 125.9 0.1 38 266-303 155-196 (372)
146 3un9_A NLR family member X1; l 99.2 1.7E-12 5.9E-17 126.5 -1.4 14 121-134 72-85 (372)
147 2ifg_A High affinity nerve gro 99.1 1.4E-10 4.9E-15 112.1 11.3 92 113-206 24-116 (347)
148 2ifg_A High affinity nerve gro 99.1 3.4E-10 1.2E-14 109.4 11.3 102 126-230 13-116 (347)
149 4gt6_A Cell surface protein; l 99.1 1.1E-08 3.8E-13 100.6 22.0 130 91-226 58-191 (394)
150 4gt6_A Cell surface protein; l 99.1 1.8E-08 6.1E-13 99.1 22.4 314 115-442 57-390 (394)
151 2ra8_A Uncharacterized protein 98.9 5.8E-10 2E-14 107.8 4.4 110 64-177 105-227 (362)
152 2ra8_A Uncharacterized protein 98.9 1.1E-09 3.9E-14 105.7 6.3 183 114-301 132-341 (362)
153 4h09_A Hypothetical leucine ri 98.7 3.5E-06 1.2E-10 82.1 23.0 299 92-419 42-343 (379)
154 4h09_A Hypothetical leucine ri 98.5 1.9E-05 6.6E-10 76.8 23.3 124 67-205 47-170 (379)
155 1io0_A Tropomodulin; LRR prote 98.4 1.9E-07 6.7E-12 81.2 5.0 41 262-302 117-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 4.6E-08 1.6E-12 85.2 0.7 118 113-230 28-164 (185)
157 3rw6_A Nuclear RNA export fact 98.1 2.3E-06 8E-11 78.4 5.1 20 54-73 77-97 (267)
158 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.4E-11 73.0 3.0 84 121-204 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.0 6E-06 2.1E-10 75.6 5.7 66 167-234 168-237 (267)
160 3e4g_A ATP synthase subunit S, 98.0 4.7E-06 1.6E-10 70.9 4.3 84 194-277 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00044 1.5E-08 59.8 5.2 64 167-230 39-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00039 1.3E-08 60.2 2.7 111 190-300 38-167 (197)
163 3rfe_A Platelet glycoprotein I 95.9 0.018 6E-07 46.3 6.7 36 364-399 33-68 (130)
164 3rfe_A Platelet glycoprotein I 95.8 0.02 6.9E-07 45.9 6.6 36 267-302 32-67 (130)
165 2lz0_A Uncharacterized protein 41.0 70 0.0024 23.5 6.1 38 91-130 15-52 (100)
166 2lz0_A Uncharacterized protein 39.3 89 0.003 22.9 6.5 37 140-177 15-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.1e-57 Score=485.09 Aligned_cols=445 Identities=31% Similarity=0.499 Sum_probs=273.8
Q ss_pred CCCCCChhhHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCC-------------------
Q 045209 18 SAAKCHPDDESGLSGFKSAITQDPSGMLSSWKPGTDCCTWTGITCLSGDRVTSLSLNGQPE------------------- 78 (478)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~C~~~~~v~~l~l~~~~~------------------- 78 (478)
+++++.++|+.||++||+++. ||. .+++|..+++||.|.||+|+ .++|++|+|++...
T Consensus 5 ~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 344557889999999999996 776 88999988899999999998 78999999987531
Q ss_pred -------------------------CCCCcceeeccc--ccccCCCCCeeecCCCCCcccccCccC--------------
Q 045209 79 -------------------------KPNSFLSGTISS--SLVKVKNLGGIYLQDLGNISGNFPDFI-------------- 117 (478)
Q Consensus 79 -------------------------~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~l-------------- 117 (478)
.+.+.+.|.+|. .+.++++|++|+++++ .+.+.+|..+
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSS-EEECCSSCCSCCCCTTCSEEECCS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCC-ccCCcCCHHHhccCCCCCEEECCC
Confidence 123445566666 6666666666666655 3333333221
Q ss_pred ------------------------------------CCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCC
Q 045209 118 ------------------------------------SGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPI 161 (478)
Q Consensus 118 ------------------------------------~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 161 (478)
..+++|++|++++|.+++.+|. +.++++|++|++++|.+++.+
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 2334444444444444444444 556666666666666666555
Q ss_pred chhhcCCCCCCEEEeecccCCC----------------------CCCccCCCC-CCCCEEEccCCCCCCCCchh------
Q 045209 162 PSSISQLTQLTQLKLGQNFLTG----------------------AIPNGISQL-KNLTYLDLQHNQLSGAIPDI------ 212 (478)
Q Consensus 162 ~~~~~~l~~L~~L~L~~n~l~~----------------------~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~------ 212 (478)
|..+..+++|++|++++|.+.+ .+|..+... ++|++|++++|.+.+.+|..
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 5555555555555555544432 233333332 44555555544444333333
Q ss_pred -------------------hhCCCCCcEEEcccCcCccccchHHHhcc--------------------------ccCcEE
Q 045209 213 -------------------FSSLKKLLFLTLSFNKFSGNIPTSIASLA--------------------------PQLQYL 247 (478)
Q Consensus 213 -------------------l~~l~~L~~L~L~~n~l~~~~~~~~~~~~--------------------------~~L~~L 247 (478)
+..+++|++|++++|.+++.+|..+.... ++|++|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 34444444444444444434443333221 123333
Q ss_pred EccCccCCCCCCcccCCCCCCCEEeccCCcCCc------------------------cchhhhcCCCCCCEEeccCCcCC
Q 045209 248 KLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSG------------------------TLPKSFSNLTKIFNLNLAYNSLT 303 (478)
Q Consensus 248 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------------------~~~~~l~~l~~L~~L~L~~n~l~ 303 (478)
++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.++
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 333333333333334444444444444444443 34444444444444444444444
Q ss_pred CCCC--ccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcc------------------------cCCCCc
Q 045209 304 DPFP--VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKM------------------------NLNNWK 357 (478)
Q Consensus 304 ~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------------~~~~~~ 357 (478)
+..+ ...+++|++|++++|+++ +.+|.++..+++|++|++++|.+.+ .+|...
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 3322 224455666666666653 4555555555555555555555544 333211
Q ss_pred cc---------------------------------------------------------------------cccCCcEEE
Q 045209 358 PA---------------------------------------------------------------------QTYFYDYID 368 (478)
Q Consensus 358 ~~---------------------------------------------------------------------~~~~L~~L~ 368 (478)
.. ....+++||
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 00 012367899
Q ss_pred ccCCcccccCccccccCCCCcEEECcCCcCcccC-CCccCCCCCCEEECCCCcCcccCCccC---CCCCeeeccCCcccc
Q 045209 369 LSENEISGGPVELLNRTDYLVEFRASGSKLKFNM-DSLRIVKTLKVLDLSRNLVFGKLPKAI---SGLDKLNVSFNNLCG 444 (478)
Q Consensus 369 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~L~~L~ls~N~l~~ 444 (478)
+++|++++.+|..+..++.|++|++++|+++|.+ ..+..+++|+.|||++|+++|.+|..+ ..|++||+++|+++|
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 9999999999999999999999999999999755 578999999999999999999999876 568899999999999
Q ss_pred cCCCC----CCCCCcccCCCCCCCCCCC
Q 045209 445 EIPKT----KFPASAFVGNECLCGPPLP 468 (478)
Q Consensus 445 ~ip~~----~~~~~~~~~n~~lc~~~~~ 468 (478)
.||.. .|+..+|.||+.+||.++.
T Consensus 719 ~iP~~~~~~~~~~~~~~gN~~Lcg~~l~ 746 (768)
T 3rgz_A 719 PIPEMGQFETFPPAKFLNNPGLCGYPLP 746 (768)
T ss_dssp ECCSSSSGGGSCGGGGCSCTEEESTTSC
T ss_pred cCCCchhhccCCHHHhcCCchhcCCCCc
Confidence 99976 6778899999999998875
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.8e-52 Score=438.59 Aligned_cols=426 Identities=19% Similarity=0.284 Sum_probs=366.2
Q ss_pred CChhhHHHHHHHHHhCCCCCCCC-------CCCCCCCCCCCcc---cceeeCCCCCEEEEEcCCCCCCCCCcceeecccc
Q 045209 22 CHPDDESGLSGFKSAITQDPSGM-------LSSWKPGTDCCTW---TGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSS 91 (478)
Q Consensus 22 ~~~~~~~~l~~~~~~~~~~~~~~-------~~~w~~~~~~c~w---~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~ 91 (478)
....|+.||.+++.++..+.+.. ..+|+.+.++|.| .||+|+..++|++|+|++. ++.|.+|++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~------~l~g~lp~~ 100 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGF------GASGRVPDA 100 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTS------CCEEEECGG
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCc------ccCCcCChH
Confidence 34568899999999986554432 3489988999999 9999987799999999984 699999999
Q ss_pred cccCCCCCeeecCCCC----------------------------------------------------------------
Q 045209 92 LVKVKNLGGIYLQDLG---------------------------------------------------------------- 107 (478)
Q Consensus 92 l~~l~~L~~L~l~~~~---------------------------------------------------------------- 107 (478)
++++++|++|+++++.
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 9999999999998762
Q ss_pred -------------CcccccCccCCCCCCCCEEEccCCCCCCC-----------------CCcccC--CCCCCCEEEeecC
Q 045209 108 -------------NISGNFPDFISGLPELKYIYIENNKLSGQ-----------------IPANIG--KLTQLEALSFSGN 155 (478)
Q Consensus 108 -------------~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~-----------------~~~~l~--~l~~L~~L~L~~n 155 (478)
.+++ +|+.++++++|++|++++|.+++. +|..+. ++++|++|++++|
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n 259 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC
Confidence 2334 888899999999999999999985 999999 9999999999999
Q ss_pred cCCCCCchhhcCCCCCCEEEeeccc-CCC-CCCccCCCC------CCCCEEEccCCCCCCCCch--hhhCCCCCcEEEcc
Q 045209 156 RFTGPIPSSISQLTQLTQLKLGQNF-LTG-AIPNGISQL------KNLTYLDLQHNQLSGAIPD--IFSSLKKLLFLTLS 225 (478)
Q Consensus 156 ~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~ 225 (478)
.+.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++.+++|++|+++
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECC
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCc
Confidence 9999999999999999999999998 988 788888776 99999999999999 7888 89999999999999
Q ss_pred cCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCC-CCEEeccCCcCCccchhhhcCCC--CCCEEeccCCcC
Q 045209 226 FNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHS-LDTLDLSWNQFSGTLPKSFSNLT--KIFNLNLAYNSL 302 (478)
Q Consensus 226 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l 302 (478)
+|.++|.+| .+..+ ++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+.... +|+.|++++|.+
T Consensus 339 ~N~l~g~ip-~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 339 YNQLEGKLP-AFGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp SCCCEEECC-CCEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CCcCccchh-hhCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 999998999 66666 49999999999999 78888999999 999999999999 7888777655 899999999999
Q ss_pred CCCCCc--c-------CcCCCCEEEccCCCCCCCCCCcc-ccCCCCccEEEccCCCCcccCCCCcccccc-------CCc
Q 045209 303 TDPFPV--M-------NVKGIESLDLSYNQFHLQQIPSW-VTSSPIIFSLKLAKCGIKMNLNNWKPAQTY-------FYD 365 (478)
Q Consensus 303 ~~~~~~--~-------~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-------~L~ 365 (478)
++..+. . .+++|++|++++|.++ .+|.. +..+++|++|++++|.++ .+|........ .|+
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQIS--KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC--SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCC
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccC--cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCcc
Confidence 885542 2 4568999999999984 67765 456899999999999999 66665443221 589
Q ss_pred EEEccCCcccccCccccc--cCCCCcEEECcCCcCcccCCCccCCCCCCEEEC------CCCcCcccCCccC---CCCCe
Q 045209 366 YIDLSENEISGGPVELLN--RTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDL------SRNLVFGKLPKAI---SGLDK 434 (478)
Q Consensus 366 ~L~Ls~n~l~~~~~~~l~--~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L------s~N~l~~~~p~~l---~~L~~ 434 (478)
+|++++|+++. +|..+. .+++|++|++++|++++.+..+..+++|+.|+| ++|++.+.+|..+ .+|++
T Consensus 492 ~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~ 570 (636)
T 4eco_A 492 SIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570 (636)
T ss_dssp EEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred EEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCE
Confidence 99999999995 556665 899999999999999998888889999999999 5677889999775 57899
Q ss_pred eeccCCcccccCCCCCC---CCCcccCCCCCCC
Q 045209 435 LNVSFNNLCGEIPKTKF---PASAFVGNECLCG 464 (478)
Q Consensus 435 L~ls~N~l~~~ip~~~~---~~~~~~~n~~lc~ 464 (478)
|++++|++ +.+|...+ ....+.+|+..|-
T Consensus 571 L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 571 LQIGSNDI-RKVNEKITPNISVLDIKDNPNISI 602 (636)
T ss_dssp EECCSSCC-CBCCSCCCTTCCEEECCSCTTCEE
T ss_pred EECCCCcC-CccCHhHhCcCCEEECcCCCCccc
Confidence 99999999 78998644 3446778887773
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-50 Score=430.80 Aligned_cols=419 Identities=18% Similarity=0.271 Sum_probs=353.8
Q ss_pred CCCChhhHHHHHHHHHhCCCCCCCCCCCCCCCC-----CC--Ccc------------cceeeCCCCCEEEEEcCCCCCCC
Q 045209 20 AKCHPDDESGLSGFKSAITQDPSGMLSSWKPGT-----DC--CTW------------TGITCLSGDRVTSLSLNGQPEKP 80 (478)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~C~~~~~v~~l~l~~~~~~~ 80 (478)
+++..+|+.||++||+++. +| +|+.+. +| |.| .||+|+..++|++|+|++.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~---- 333 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF---- 333 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTT----
T ss_pred cccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccC----
Confidence 3455679999999999985 44 676443 55 999 9999987899999999985
Q ss_pred CCcceeecccccccCCCCCeeec-CCCCCcccc-----------------------------------------------
Q 045209 81 NSFLSGTISSSLVKVKNLGGIYL-QDLGNISGN----------------------------------------------- 112 (478)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L~~L~l-~~~~~~~~~----------------------------------------------- 112 (478)
++.|.+|+.++++++|++|+| +.+ .+.|.
T Consensus 334 --~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 334 --GAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp --CCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred --CCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 699999999999999999999 443 22222
Q ss_pred -----------------------------cCccCCCCCCCCEEEccCCCCCC-----------------CCCcccC--CC
Q 045209 113 -----------------------------FPDFISGLPELKYIYIENNKLSG-----------------QIPANIG--KL 144 (478)
Q Consensus 113 -----------------------------~~~~l~~l~~L~~L~Ls~n~~~~-----------------~~~~~l~--~l 144 (478)
+|..++++++|++|+|++|.+++ .+|..++ ++
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L 490 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred CccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence 78889999999999999999998 3899888 99
Q ss_pred CCCCEEEeecCcCCCCCchhhcCCCCCCEEEeeccc-CCC-CCCccCCC-------CCCCCEEEccCCCCCCCCch--hh
Q 045209 145 TQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNF-LTG-AIPNGISQ-------LKNLTYLDLQHNQLSGAIPD--IF 213 (478)
Q Consensus 145 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~-------l~~L~~L~l~~n~l~~~~~~--~l 213 (478)
++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++. +++|++|++++|.+. .+|. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence 999999999999999999999999999999999998 887 67765544 459999999999999 7888 89
Q ss_pred hCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCC-CCEEeccCCcCCccchhhhcCCCC-
Q 045209 214 SSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHS-LDTLDLSWNQFSGTLPKSFSNLTK- 291 (478)
Q Consensus 214 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~- 291 (478)
..+++|+.|++++|.++ .+| .+..+ ++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+.....
T Consensus 570 ~~L~~L~~L~Ls~N~l~-~lp-~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVR-HLE-AFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp TTCTTCCEEECTTSCCC-BCC-CCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hcCCCCCEEECCCCCcc-cch-hhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 99999999999999998 888 66666 59999999999999 78888999999 999999999998 77877776654
Q ss_pred -CCEEeccCCcCCCCCCcc-------CcCCCCEEEccCCCCCCCCCCcccc-CCCCccEEEccCCCCcccCCCCcccccc
Q 045209 292 -IFNLNLAYNSLTDPFPVM-------NVKGIESLDLSYNQFHLQQIPSWVT-SSPIIFSLKLAKCGIKMNLNNWKPAQTY 362 (478)
Q Consensus 292 -L~~L~L~~n~l~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 362 (478)
|+.|++++|.+.+.++.. ..++|++|++++|.+ ..+|..+. .+++|+.|++++|.+. .+|........
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L--~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~ 721 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI--QKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD 721 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC--CSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC--CccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc
Confidence 999999999998754421 345899999999998 46787654 7899999999999998 66665443221
Q ss_pred -------CCcEEEccCCcccccCccccc--cCCCCcEEECcCCcCcccCCCccCCCCCCEEECCC------CcCcccCCc
Q 045209 363 -------FYDYIDLSENEISGGPVELLN--RTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSR------NLVFGKLPK 427 (478)
Q Consensus 363 -------~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~------N~l~~~~p~ 427 (478)
.|++|++++|+++ .+|..+. .+++|+.|++++|++++.+..+..+++|+.|+|++ |++.+.+|.
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 5899999999999 4566665 89999999999999999888888999999999977 788899997
Q ss_pred cC---CCCCeeeccCCcccccCCCCCCC---CCcccCCCCC
Q 045209 428 AI---SGLDKLNVSFNNLCGEIPKTKFP---ASAFVGNECL 462 (478)
Q Consensus 428 ~l---~~L~~L~ls~N~l~~~ip~~~~~---~~~~~~n~~l 462 (478)
.+ .+|+.|+|++|++ +.||...++ ...+.+|+..
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTC
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCC
Confidence 65 5789999999999 799987443 3345666543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.4e-44 Score=383.35 Aligned_cols=360 Identities=28% Similarity=0.409 Sum_probs=285.7
Q ss_pred CcceeecccccccCCCCCeeecCCCCCcccccCcc-CCCCCCCCEEEccCCCCCCCCCcccCCCC-CCCEEEeecCcCCC
Q 045209 82 SFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDF-ISGLPELKYIYIENNKLSGQIPANIGKLT-QLEALSFSGNRFTG 159 (478)
Q Consensus 82 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~-~L~~L~L~~n~i~~ 159 (478)
+.+.+.+|..+.++++|++|+++++ .+.+.+|.. +.++++|++|++++|.+++.+|..+..++ +|++|++++|.+++
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred CcCCCccchHHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 3456666666666777777777665 566566644 66667777777777766666666666655 66666666666666
Q ss_pred CCchhhcC--CCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHH
Q 045209 160 PIPSSISQ--LTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSI 237 (478)
Q Consensus 160 ~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 237 (478)
..|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 462 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 55555555 6678888888888777788888888888888888888888888888888888888888888888888877
Q ss_pred HhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCC
Q 045209 238 ASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIE 315 (478)
Q Consensus 238 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~ 315 (478)
.... +|++|++++|.+++.+|..+..+++|++|++++|++++.+|.+++.+++|+.|++++|++++..| ...+++|+
T Consensus 463 ~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 463 MYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp GGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred cCCC-CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 7774 88888888888888888888888889999998888888888888888889999999888886554 34778899
Q ss_pred EEEccCCCCCCCCCCcc---------------------------------------------------------------
Q 045209 316 SLDLSYNQFHLQQIPSW--------------------------------------------------------------- 332 (478)
Q Consensus 316 ~L~l~~n~l~~~~~~~~--------------------------------------------------------------- 332 (478)
+|++++|+++ +.+|..
T Consensus 542 ~L~Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 542 WLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp EEECCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred EEECCCCccC-CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 9999888874 455543
Q ss_pred -------ccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccC-CC
Q 045209 333 -------VTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM-DS 404 (478)
Q Consensus 333 -------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~ 404 (478)
+..+++|++|++++|+++|.+|........ |+.|++++|++++.+|..+.++++|++|++++|+++|.+ ..
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred cccCchhhhccccccEEECcCCcccccCCHHHhcccc-CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 334578999999999999999976554443 899999999999999999999999999999999999765 57
Q ss_pred ccCCCCCCEEECCCCcCcccCCcc--CCCCCeeeccCCc-cccc
Q 045209 405 LRIVKTLKVLDLSRNLVFGKLPKA--ISGLDKLNVSFNN-LCGE 445 (478)
Q Consensus 405 ~~~l~~L~~L~Ls~N~l~~~~p~~--l~~L~~L~ls~N~-l~~~ 445 (478)
+..++.|++||+++|+++|.+|.. |..+....+.+|+ ++|.
T Consensus 700 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred HhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 899999999999999999999975 5566677788884 7763
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-41 Score=356.62 Aligned_cols=374 Identities=20% Similarity=0.185 Sum_probs=252.8
Q ss_pred CCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCC
Q 045209 65 GDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKL 144 (478)
Q Consensus 65 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l 144 (478)
+.+++.|+++++ .+.+..|..+.++++|++|+++++ .+.+..|..|.++++|++|++++|.+++..|..|.++
T Consensus 32 ~~~l~~L~Ls~n------~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 32 PNSTECLEFSFN------VLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp CTTCCEEECTTC------CCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CCcCcEEEccCC------ccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 357899999874 577777889999999999999997 7888888899999999999999999998888899999
Q ss_pred CCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCc--EE
Q 045209 145 TQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLL--FL 222 (478)
Q Consensus 145 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L 222 (478)
++|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..++.+++|+ +|
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 9999999999999976677788999999999999999865444555689999999999998877777888888887 77
Q ss_pred EcccCcCccccchH------------------------------------------------------------------
Q 045209 223 TLSFNKFSGNIPTS------------------------------------------------------------------ 236 (478)
Q Consensus 223 ~L~~n~l~~~~~~~------------------------------------------------------------------ 236 (478)
++++|.+++..|..
T Consensus 185 ~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred ecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 77777766433322
Q ss_pred ---------HHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC
Q 045209 237 ---------IASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP 307 (478)
Q Consensus 237 ---------~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 307 (478)
+..+ ++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus 265 ~l~~~~~~~~~~l-~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 265 YFFNISSNTFHCF-SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CCSSCCTTTTTTC-TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred ccCccCHHHhccc-cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 1122 36677777777666 556666677777777777777765555556666666666666665543222
Q ss_pred ---ccCcCCCCEEEccCCCCC-------------------------CCCCCccccCCCCccEEEccCCCCcccCCCCccc
Q 045209 308 ---VMNVKGIESLDLSYNQFH-------------------------LQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPA 359 (478)
Q Consensus 308 ---~~~~~~L~~L~l~~n~l~-------------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 359 (478)
...+++|++|++++|.++ ....|..+..+++|++|++++|.+.+..+.....
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 223444555555555442 1222333444445555555555544433322111
Q ss_pred cccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCccc--C--CCccCCCCCCEEECCCCcCcccCCccC---CCC
Q 045209 360 QTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFN--M--DSLRIVKTLKVLDLSRNLVFGKLPKAI---SGL 432 (478)
Q Consensus 360 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~--~--~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~L 432 (478)
....|++|++++|.+.+.++..+..+++|++|++++|++++. + ..+..+++|++|++++|++++..|..| ++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 222356666666666666666666666677777777666541 1 235555666666666666655555443 345
Q ss_pred CeeeccCCcccccCC
Q 045209 433 DKLNVSFNNLCGEIP 447 (478)
Q Consensus 433 ~~L~ls~N~l~~~ip 447 (478)
++|++++|++++..|
T Consensus 503 ~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSI 517 (606)
T ss_dssp CEEECCSSCCCGGGG
T ss_pred CEEECCCCccCcCCh
Confidence 566666666655444
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-42 Score=373.52 Aligned_cols=405 Identities=18% Similarity=0.218 Sum_probs=271.6
Q ss_pred CCcccceeeCCCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCccccc-CccCCCCCCCCEEEccCCC
Q 045209 54 CCTWTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNF-PDFISGLPELKYIYIENNK 132 (478)
Q Consensus 54 ~c~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~Ls~n~ 132 (478)
.|+|..|.+ .+.+++.|+|+++ .+.+..+..+.++++|++|+++++ ...+.+ |..|.++++|++|+|++|.
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N------~i~~i~~~~~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFN------YIRTVTASSFPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESC------CCCEECSSSCSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred CCCCCCCCC-CCCCcCEEECCCC------cCCccChhHCcccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCc
Confidence 357888888 7788999999974 467777778888888888888876 344444 6777888888888888888
Q ss_pred CCCCCCcccCCCCCCCEEEeecCcCCCCCchh--hcCCCCCCEEEeecccCCCCCC-ccCCCCCCCCEEEccCCCCCCCC
Q 045209 133 LSGQIPANIGKLTQLEALSFSGNRFTGPIPSS--ISQLTQLTQLKLGQNFLTGAIP-NGISQLKNLTYLDLQHNQLSGAI 209 (478)
Q Consensus 133 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~ 209 (478)
+.+..|..|.++++|++|++++|.+++..|.. +..+++|++|++++|.+++..+ ..++++++|++|++++|.+.+..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 88777778888888888888888887655554 7778888888888888776544 46778888888888887776655
Q ss_pred chhhhCC--CC------------------------------CcEEEcccCcCccccchHHHhc-----------------
Q 045209 210 PDIFSSL--KK------------------------------LLFLTLSFNKFSGNIPTSIASL----------------- 240 (478)
Q Consensus 210 ~~~l~~l--~~------------------------------L~~L~L~~n~l~~~~~~~~~~~----------------- 240 (478)
+..+..+ ++ |+.|++++|.+++..+..+...
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 5444322 12 5666666665544333322211
Q ss_pred --------------------cccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCC
Q 045209 241 --------------------APQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYN 300 (478)
Q Consensus 241 --------------------~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 300 (478)
.++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence 135667777777666666666666777777777777766666666666666777777666
Q ss_pred cCCCCCC--ccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcc---------------------------
Q 045209 301 SLTDPFP--VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKM--------------------------- 351 (478)
Q Consensus 301 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--------------------------- 351 (478)
.+++..+ +..+++|++|++++|++. ...+..+..+++|+.|++++|.+++
T Consensus 325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l 403 (844)
T 3j0a_A 325 LLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403 (844)
T ss_dssp CCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTC
T ss_pred CCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccccc
Confidence 6655322 335556666666666652 2223345555555555555555432
Q ss_pred -------------------------------------cCCCCccccccCCcEEEccCCccc-----ccCccccccCCCCc
Q 045209 352 -------------------------------------NLNNWKPAQTYFYDYIDLSENEIS-----GGPVELLNRTDYLV 389 (478)
Q Consensus 352 -------------------------------------~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~ 389 (478)
..+.........|++|++++|.+. +..+..|.++++|+
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 111111111122444444444443 22334566778888
Q ss_pred EEECcCCcCcccCC-CccCCCCCCEEECCCCcCcccCCccC-CCCCeeeccCCcccccCCCC--CCCCCcccCCCCCCCC
Q 045209 390 EFRASGSKLKFNMD-SLRIVKTLKVLDLSRNLVFGKLPKAI-SGLDKLNVSFNNLCGEIPKT--KFPASAFVGNECLCGP 465 (478)
Q Consensus 390 ~L~ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~L~~L~ls~N~l~~~ip~~--~~~~~~~~~n~~lc~~ 465 (478)
+|++++|++++.++ .+..+++|+.|+|++|+|++..|..+ .+|+.|+|++|++++.+|.. .+....+.+|++.|.+
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSS
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCccccc
Confidence 88888888887764 57889999999999999988777666 57999999999999888864 4455678899999965
Q ss_pred CC
Q 045209 466 PL 467 (478)
Q Consensus 466 ~~ 467 (478)
.+
T Consensus 564 ~~ 565 (844)
T 3j0a_A 564 EL 565 (844)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-41 Score=356.29 Aligned_cols=390 Identities=20% Similarity=0.188 Sum_probs=292.5
Q ss_pred CCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCC
Q 045209 65 GDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKL 144 (478)
Q Consensus 65 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l 144 (478)
+.+++.|+++++ .+.+..+..+.++++|++|+++++ .+.+..|..|.++++|++|++++|.+++..|..|.++
T Consensus 31 ~~~l~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 31 PSSTKNIDLSFN------PLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp CTTCCEEECTTS------CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCcCEEECCCC------CcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 467999999984 577877889999999999999997 7888888889999999999999999998889999999
Q ss_pred CCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCC-CCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCc---
Q 045209 145 TQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTG-AIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLL--- 220 (478)
Q Consensus 145 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--- 220 (478)
++|++|++++|.+++..+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|+
T Consensus 104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 999999999999997777889999999999999999986 5688999999999999999999877666555444332
Q ss_pred -EEEcccCcCccccchHHHhcc----------------------------------------------------------
Q 045209 221 -FLTLSFNKFSGNIPTSIASLA---------------------------------------------------------- 241 (478)
Q Consensus 221 -~L~L~~n~l~~~~~~~~~~~~---------------------------------------------------------- 241 (478)
+|++++|.+++ ++...+...
T Consensus 184 ~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 184 LSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred ceeeccCCCcce-eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 45555554431 111111110
Q ss_pred --------------------------------------------ccCcEEEccCccCCCCCCc-----------------
Q 045209 242 --------------------------------------------PQLQYLKLGHNVLSGKVPD----------------- 260 (478)
Q Consensus 242 --------------------------------------------~~L~~L~L~~n~l~~~~~~----------------- 260 (478)
++|++|++++|.+ +.+|.
T Consensus 263 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGS 341 (606)
T ss_dssp EEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSC
T ss_pred HhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCc
Confidence 1344444444444 22331
Q ss_pred ---ccCCCCCCCEEeccCCcCCcc--chhhhcCCCCCCEEeccCCcCCCCC-CccCcCCCCEEEccCCCCCCCCCC-ccc
Q 045209 261 ---FLGKFHSLDTLDLSWNQFSGT--LPKSFSNLTKIFNLNLAYNSLTDPF-PVMNVKGIESLDLSYNQFHLQQIP-SWV 333 (478)
Q Consensus 261 ---~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~ 333 (478)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++.. .+..+++|++|++++|++. +..| ..+
T Consensus 342 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~ 420 (606)
T 3vq2_A 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK-RVTEFSAF 420 (606)
T ss_dssp EECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEE-STTTTTTT
T ss_pred cchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccC-CccChhhh
Confidence 123445555555555555543 2556667777777777777666532 3446778888888888874 4444 567
Q ss_pred cCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccc-cCccccccCCCCcEEECcCCcCcccC-CCccCCCCC
Q 045209 334 TSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISG-GPVELLNRTDYLVEFRASGSKLKFNM-DSLRIVKTL 411 (478)
Q Consensus 334 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~l~~L 411 (478)
..+++|++|++++|.+.+..|....... .|++|++++|.+++ .+|..+..+++|++|++++|++++.+ ..+..+++|
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 7888889999998888877766544333 37999999999988 47888899999999999999998875 568889999
Q ss_pred CEEECCCCcCcccCCccCC---CCCeeeccCCcccccCCCC------CCCCCcccCCCCCCCCC
Q 045209 412 KVLDLSRNLVFGKLPKAIS---GLDKLNVSFNNLCGEIPKT------KFPASAFVGNECLCGPP 466 (478)
Q Consensus 412 ~~L~Ls~N~l~~~~p~~l~---~L~~L~ls~N~l~~~ip~~------~~~~~~~~~n~~lc~~~ 466 (478)
++|++++|++++.+|..+. +|++|++++|+++ .+|.. .+....+.+|++.|.+.
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999988887764 6889999999998 67765 23445678899888655
No 8
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-41 Score=352.13 Aligned_cols=194 Identities=22% Similarity=0.296 Sum_probs=150.0
Q ss_pred CCcccceeeCC------------CCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCC
Q 045209 54 CCTWTGITCLS------------GDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLP 121 (478)
Q Consensus 54 ~c~w~gv~C~~------------~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 121 (478)
.|.|.|+ |+. ..+++.|++++. .+.+..|..+.++++|++|+++++ .+.+..|+.|.+++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~ 74 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN------KITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLG 74 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS------CCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCC------ccCccChhhhhcCCcccEEECCCC-CcCccChhhccccc
Confidence 4788887 752 247899999874 577777888999999999999998 78888888899999
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCC-CCchhhcCCCCCCEEEeecccCCCCCC-ccCCCCCCCCEEE
Q 045209 122 ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTG-PIPSSISQLTQLTQLKLGQNFLTGAIP-NGISQLKNLTYLD 199 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~ 199 (478)
+|++|++++|.+++..+..|.++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.++ ..+.++++|++|+
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 99999999999997777779999999999999999986 346778899999999999998544544 5788999999999
Q ss_pred ccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCC
Q 045209 200 LQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSG 256 (478)
Q Consensus 200 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 256 (478)
+++|.+.+..|..+..+++|++|++++|.+. .+|..+....++|++|++++|.+++
T Consensus 155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence 9999998877777776666666666666554 3444433323355555555555443
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.4e-40 Score=345.93 Aligned_cols=275 Identities=22% Similarity=0.249 Sum_probs=211.2
Q ss_pred CCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCc-ccCCCCC
Q 045209 189 ISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPD-FLGKFHS 267 (478)
Q Consensus 189 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~ 267 (478)
+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.+.+.++. .+..+++
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCcccccchhhhhccCc
Confidence 455666777777777666 556666677777777777777765555555555 4777777777777655543 4777888
Q ss_pred CCEEeccCCcCCccc--hhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEE
Q 045209 268 LDTLDLSWNQFSGTL--PKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLK 343 (478)
Q Consensus 268 L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 343 (478)
|++|++++|.+++.. +..+..+++|++|++++|.+.+..+ +..+++|++|++++|+++....+..+..+++|++|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 888888888887655 6678888899999999998876433 446889999999999985333345588999999999
Q ss_pred ccCCCCcccCCCCccccccCCcEEEccCCccccc---CccccccCCCCcEEECcCCcCcccC-CCccCCCCCCEEECCCC
Q 045209 344 LAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGG---PVELLNRTDYLVEFRASGSKLKFNM-DSLRIVKTLKVLDLSRN 419 (478)
Q Consensus 344 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L~Ls~N 419 (478)
+++|.+.+..|....... .|++|++++|++.+. .+..+..+++|++|++++|++++.+ ..+..+++|++|+|++|
T Consensus 432 l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 999999987776554333 489999999999874 2356889999999999999999875 67889999999999999
Q ss_pred cCcccCCccCCCCC--eeeccCCcccccCCCC-----CCCCCcccCCCCCCCCC
Q 045209 420 LVFGKLPKAISGLD--KLNVSFNNLCGEIPKT-----KFPASAFVGNECLCGPP 466 (478)
Q Consensus 420 ~l~~~~p~~l~~L~--~L~ls~N~l~~~ip~~-----~~~~~~~~~n~~lc~~~ 466 (478)
++++..|..+.+++ +|++++|++++..|.. .+....+.+|++.|.+.
T Consensus 511 ~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999998875433 8899999999766643 45667788888877543
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-41 Score=356.13 Aligned_cols=352 Identities=20% Similarity=0.310 Sum_probs=309.1
Q ss_pred CCcceeecccccccCCCCCeeecCCCCCcccc-----------------cCccCC--CCCCCCEEEccCCCCCCCCCccc
Q 045209 81 NSFLSGTISSSLVKVKNLGGIYLQDLGNISGN-----------------FPDFIS--GLPELKYIYIENNKLSGQIPANI 141 (478)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----------------~~~~l~--~l~~L~~L~Ls~n~~~~~~~~~l 141 (478)
.+.++| +|+.++++++|++|+++++ .+.+. +|+.++ ++++|++|++++|.+.+.+|..+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 457888 9999999999999999998 78886 999999 99999999999999999999999
Q ss_pred CCCCCCCEEEeecCc-CCC-CCchhhcCC------CCCCEEEeecccCCCCCCc--cCCCCCCCCEEEccCCCCCCCCch
Q 045209 142 GKLTQLEALSFSGNR-FTG-PIPSSISQL------TQLTQLKLGQNFLTGAIPN--GISQLKNLTYLDLQHNQLSGAIPD 211 (478)
Q Consensus 142 ~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~ 211 (478)
.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. .++.+++|++|++++|.+.+.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 999999999999998 998 789888876 99999999999999 8888 89999999999999999998888
Q ss_pred hhhCCCCCcEEEcccCcCccccchHHHhcccc-CcEEEccCccCCCCCCcccCCCC--CCCEEeccCCcCCccchhhhc-
Q 045209 212 IFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQ-LQYLKLGHNVLSGKVPDFLGKFH--SLDTLDLSWNQFSGTLPKSFS- 287 (478)
Q Consensus 212 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~l~- 287 (478)
.+..+++|++|++++|.++ .+|..+..+. + |++|++++|.++ .+|..+...+ +|++|++++|.+++..|..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 8999999999999999998 8888887775 7 999999999999 7888777655 899999999999999998888
Q ss_pred ------CCCCCCEEeccCCcCCCCCCc--cCcCCCCEEEccCCCCCCCCCCccccC--------CCCccEEEccCCCCcc
Q 045209 288 ------NLTKIFNLNLAYNSLTDPFPV--MNVKGIESLDLSYNQFHLQQIPSWVTS--------SPIIFSLKLAKCGIKM 351 (478)
Q Consensus 288 ------~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~--------~~~L~~L~l~~n~l~~ 351 (478)
.+++|+.|++++|.+++..+. ..+++|++|++++|+++ .+|..... +++|++|++++|.++
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 501 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLT- 501 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCC-
Confidence 788999999999999965442 35789999999999984 67765433 239999999999999
Q ss_pred cCCCCcc-ccccCCcEEEccCCcccccCccccccCCCCcEEECc------CCcCccc-CCCccCCCCCCEEECCCCcCcc
Q 045209 352 NLNNWKP-AQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRAS------GSKLKFN-MDSLRIVKTLKVLDLSRNLVFG 423 (478)
Q Consensus 352 ~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls------~n~l~~~-~~~~~~l~~L~~L~Ls~N~l~~ 423 (478)
.+|.... .....|++|++++|++++ +|..+..+++|++|+++ +|++.+. +..+..+++|++|+|++|++ +
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~ 579 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-R 579 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-C
Confidence 6665443 233458999999999999 77888899999999995 4666654 46788999999999999999 7
Q ss_pred cCCccC-CCCCeeeccCCcccc
Q 045209 424 KLPKAI-SGLDKLNVSFNNLCG 444 (478)
Q Consensus 424 ~~p~~l-~~L~~L~ls~N~l~~ 444 (478)
.+|..+ ++|+.|++++|++..
T Consensus 580 ~ip~~~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 580 KVNEKITPNISVLDIKDNPNIS 601 (636)
T ss_dssp BCCSCCCTTCCEEECCSCTTCE
T ss_pred ccCHhHhCcCCEEECcCCCCcc
Confidence 778754 689999999998873
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.8e-42 Score=329.15 Aligned_cols=293 Identities=33% Similarity=0.601 Sum_probs=233.7
Q ss_pred CCCChhhHHHHHHHHHhCCCCCCCCCCCCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCCCCCCCccee--eccccc
Q 045209 20 AKCHPDDESGLSGFKSAITQDPSGMLSSWKPGTDCCT--WTGITCLSG---DRVTSLSLNGQPEKPNSFLSG--TISSSL 92 (478)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~C~~~---~~v~~l~l~~~~~~~~~~~~~--~~~~~l 92 (478)
+.|+++|+.||++||+++. +|. .+++|..+.+||. |.||+|+.. ++|+.|++++. .+.| .+|+.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~------~l~~~~~~~~~l 72 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL------NLPKPYPIPSSL 72 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC------CCSSCEECCGGG
T ss_pred CCCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC------CccCCcccChhH
Confidence 3589999999999999985 664 6789988889998 999999843 79999999984 5777 788888
Q ss_pred ccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCC
Q 045209 93 VKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLT 172 (478)
Q Consensus 93 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 172 (478)
.++++|++|+++++..+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 88888888888852277788888888888888888888888878888888888888888888888877888888888888
Q ss_pred EEEeecccCCCCCCccCCCCC-CCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccC
Q 045209 173 QLKLGQNFLTGAIPNGISQLK-NLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGH 251 (478)
Q Consensus 173 ~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~ 251 (478)
+|++++|++++.+|..+..++ .|++|++++|.+.+..|..+..++ |++|++++|.+++..|..+..+ ++|++|++++
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~ 230 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAK 230 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTT-SCCSEEECCS
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcC-CCCCEEECCC
Confidence 888888888877888888877 888888888888777777777776 8888888888876666666655 4788888888
Q ss_pred ccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCc-cCcCCCCEEEccCCC
Q 045209 252 NVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPV-MNVKGIESLDLSYNQ 323 (478)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~l~~n~ 323 (478)
|.+++.++. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++..|. ..+++|+.+++++|+
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 888765554 66777888888888888777777787788888888888877754433 355667777777766
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-39 Score=329.73 Aligned_cols=351 Identities=23% Similarity=0.222 Sum_probs=294.4
Q ss_pred CCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCC-CcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEE
Q 045209 96 KNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQI-PANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQL 174 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 174 (478)
++|++|+++++ .+.+..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|++++..|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 78999999987 788878888999999999999999887555 5678899999999999999998888889999999999
Q ss_pred EeecccCCCCCCcc--CCCCCCCCEEEccCCCCCCCCchh-hhCCCCCcEEEcccCcCccccchHHHhcc-ccCcEEEcc
Q 045209 175 KLGQNFLTGAIPNG--ISQLKNLTYLDLQHNQLSGAIPDI-FSSLKKLLFLTLSFNKFSGNIPTSIASLA-PQLQYLKLG 250 (478)
Q Consensus 175 ~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~L~~L~L~ 250 (478)
++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+. ++++.|+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999998755544 889999999999999998877765 78999999999999999877776665541 388999999
Q ss_pred CccCCCCCCcc--------cCCCCCCCEEeccCCcCCccchhhhcCC---CCCCEEeccCCcCCCCCC------------
Q 045209 251 HNVLSGKVPDF--------LGKFHSLDTLDLSWNQFSGTLPKSFSNL---TKIFNLNLAYNSLTDPFP------------ 307 (478)
Q Consensus 251 ~n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~------------ 307 (478)
+|.+.+..+.. +..+++|++|++++|.+++..|..+... ++|+.|++++|...+...
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 99988654433 2356789999999999998888777544 889999999886554211
Q ss_pred c--cCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccC
Q 045209 308 V--MNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRT 385 (478)
Q Consensus 308 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 385 (478)
+ ...++|++|++++|.++ +..|..+..+++|++|++++|.+.+..|....... .|++|++++|.+++..+..+..+
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGGTTC
T ss_pred cccccccCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhHhcCc
Confidence 0 12368999999999995 66788899999999999999999987775544333 48999999999999999999999
Q ss_pred CCCcEEECcCCcCcccC-CCccCCCCCCEEECCCCcCcccCCcc---CCCCCeeeccCCcccccCCCC
Q 045209 386 DYLVEFRASGSKLKFNM-DSLRIVKTLKVLDLSRNLVFGKLPKA---ISGLDKLNVSFNNLCGEIPKT 449 (478)
Q Consensus 386 ~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~L~~L~ls~N~l~~~ip~~ 449 (478)
++|++|++++|++++.. ..+..+++|++|+|++|++++..+.. +.+|++|++++|++++..|..
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 99999999999999874 67889999999999999998866644 467999999999999999853
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=337.34 Aligned_cols=389 Identities=21% Similarity=0.221 Sum_probs=267.4
Q ss_pred CCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCC
Q 045209 65 GDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKL 144 (478)
Q Consensus 65 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l 144 (478)
+.+++.|++++. .+.+..+..+.++++|++|+++++ .+.+..+..|.++++|++|++++|.+++..|..|.++
T Consensus 27 ~~~l~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 27 PFSTKNLDLSFN------PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp CSSCCEEECCSC------CCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cccccEEEccCC------ccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 457899999874 577777778999999999999987 7777777889999999999999999987777889999
Q ss_pred CCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCC-CCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCC----
Q 045209 145 TQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTG-AIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKL---- 219 (478)
Q Consensus 145 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---- 219 (478)
++|++|++++|.+++..+..+.++++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+++|
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 999999999999986655568899999999999999886 468889999999999999999987777777777777
Q ss_pred cEEEcccCcCccccchH---------------------------------------------------------------
Q 045209 220 LFLTLSFNKFSGNIPTS--------------------------------------------------------------- 236 (478)
Q Consensus 220 ~~L~L~~n~l~~~~~~~--------------------------------------------------------------- 236 (478)
+.|++++|.+++..+..
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 77777777665332221
Q ss_pred ------------------HHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhh-h-----------
Q 045209 237 ------------------IASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKS-F----------- 286 (478)
Q Consensus 237 ------------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l----------- 286 (478)
+... ++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.. +
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n 335 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGG-TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESC
T ss_pred hhhhhhcchhhhhhchhhhcCc-CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCC
Confidence 1122 36677777777666 455555555 6666666666555 33321 0
Q ss_pred --------cCCCCCCEEeccCCcCCCCC----CccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCC
Q 045209 287 --------SNLTKIFNLNLAYNSLTDPF----PVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLN 354 (478)
Q Consensus 287 --------~~l~~L~~L~L~~n~l~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 354 (478)
..+++|+.|++++|.+++.. ....+++|++|++++|.+ ..++..+..+++|++|++++|.+.+..+
T Consensus 336 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp BSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE--EEEEEEEETCTTCCEEECTTSEEESCTT
T ss_pred ccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc--ccccccccccCCCCEEEccCCccccccc
Confidence 23344444444444443321 112344455555555544 2233335566666666666666665544
Q ss_pred CCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCc--ccCCCccCCCCCCEEECCCCcCcccCCccC---
Q 045209 355 NWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLK--FNMDSLRIVKTLKVLDLSRNLVFGKLPKAI--- 429 (478)
Q Consensus 355 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--- 429 (478)
.........|++|++++|.+.+..+..+.++++|++|++++|++. ..+..+..+++|++|++++|++++..|..+
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 222222334678888888877777777777888888888888876 245667777888888888888877767654
Q ss_pred CCCCeeeccCCcccccCCCC-----CCCCCcccCCCCCCCCC
Q 045209 430 SGLDKLNVSFNNLCGEIPKT-----KFPASAFVGNECLCGPP 466 (478)
Q Consensus 430 ~~L~~L~ls~N~l~~~ip~~-----~~~~~~~~~n~~lc~~~ 466 (478)
.+|++|++++|++++..|.. .+....+.+|+..|..+
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 45777888888887554432 22334556666666543
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.2e-40 Score=353.40 Aligned_cols=351 Identities=19% Similarity=0.257 Sum_probs=301.5
Q ss_pred CcceeecccccccCCCCCeeecCCCCCccc-----------------ccCccCC--CCCCCCEEEccCCCCCCCCCcccC
Q 045209 82 SFLSGTISSSLVKVKNLGGIYLQDLGNISG-----------------NFPDFIS--GLPELKYIYIENNKLSGQIPANIG 142 (478)
Q Consensus 82 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~~l~--~l~~L~~L~Ls~n~~~~~~~~~l~ 142 (478)
+.+.| +|+.+.++++|++|+++++ .+.+ .+|+.++ ++++|++|++++|.+.+.+|..|.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 56777 8999999999999999998 7888 4899988 999999999999999999999999
Q ss_pred CCCCCCEEEeecCc-CCC-CCchhhcCCC-------CCCEEEeecccCCCCCCc--cCCCCCCCCEEEccCCCCCCCCch
Q 045209 143 KLTQLEALSFSGNR-FTG-PIPSSISQLT-------QLTQLKLGQNFLTGAIPN--GISQLKNLTYLDLQHNQLSGAIPD 211 (478)
Q Consensus 143 ~l~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~ 211 (478)
++++|++|++++|+ +++ .+|..+..++ +|++|++++|.++ .+|. .+.++++|++|++++|.+. .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 99999999999998 887 7887766555 9999999999999 8888 8999999999999999998 777
Q ss_pred hhhCCCCCcEEEcccCcCccccchHHHhcccc-CcEEEccCccCCCCCCcccCCCCC--CCEEeccCCcCCccchhh---
Q 045209 212 IFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQ-LQYLKLGHNVLSGKVPDFLGKFHS--LDTLDLSWNQFSGTLPKS--- 285 (478)
Q Consensus 212 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~--- 285 (478)
.+..+++|+.|++++|.++ .+|..+..+. + |++|++++|.++ .+|..+..++. |+.|++++|.+.+.+|..
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT-DQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEEC-TTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhcc-ccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 8999999999999999998 8998888775 7 999999999999 78887776654 999999999998876532
Q ss_pred hc--CCCCCCEEeccCCcCCCCCCc--cCcCCCCEEEccCCCCCCCCCCccccCC--------CCccEEEccCCCCcccC
Q 045209 286 FS--NLTKIFNLNLAYNSLTDPFPV--MNVKGIESLDLSYNQFHLQQIPSWVTSS--------PIIFSLKLAKCGIKMNL 353 (478)
Q Consensus 286 l~--~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~--------~~L~~L~l~~n~l~~~~ 353 (478)
+. ..++|+.|++++|.++..+.. ..+++|+.|++++|+++ .+|..+... ++|+.|++++|+++ .+
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC--ccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 22 345899999999999964332 26789999999999984 777765443 39999999999999 66
Q ss_pred CCCcc-ccccCCcEEEccCCcccccCccccccCCCCcEEECcC------CcCccc-CCCccCCCCCCEEECCCCcCcccC
Q 045209 354 NNWKP-AQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASG------SKLKFN-MDSLRIVKTLKVLDLSRNLVFGKL 425 (478)
Q Consensus 354 ~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~------n~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~ 425 (478)
|.... .....|+.|++++|++++ +|..+..+++|+.|++++ |++.+. +..+..+++|+.|+|++|++ +.+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~I 821 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKV 821 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Ccc
Confidence 65543 233458999999999998 677888999999999977 666654 45888999999999999999 788
Q ss_pred CccC-CCCCeeeccCCccccc
Q 045209 426 PKAI-SGLDKLNVSFNNLCGE 445 (478)
Q Consensus 426 p~~l-~~L~~L~ls~N~l~~~ 445 (478)
|..+ ++|+.|||++|++...
T Consensus 822 p~~l~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 822 DEKLTPQLYILDIADNPNISI 842 (876)
T ss_dssp CSCCCSSSCEEECCSCTTCEE
T ss_pred CHhhcCCCCEEECCCCCCCcc
Confidence 8765 6899999999999743
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-38 Score=336.99 Aligned_cols=376 Identities=21% Similarity=0.198 Sum_probs=254.6
Q ss_pred CCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCC
Q 045209 65 GDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKL 144 (478)
Q Consensus 65 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l 144 (478)
+.+++.|++++. .+.+..+..+.++++|++|+++++ .+.+..|..+.++++|++|++++|.+++..+..|.++
T Consensus 24 ~~~l~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 24 PTNITVLNLTHN------QLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp CTTCSEEECCSS------CCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEECCCC------CCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 467999999874 467766678899999999999987 7888888888889999999999999885555578899
Q ss_pred CCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhh--CCCCCcEE
Q 045209 145 TQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFS--SLKKLLFL 222 (478)
Q Consensus 145 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L 222 (478)
++|++|++++|.+++..|..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 9999999999999877777888999999999999998888788888899999999999888877666554 44678888
Q ss_pred EcccCcCccccchHHHh---------------------------------------------------cc-ccCcEEEcc
Q 045209 223 TLSFNKFSGNIPTSIAS---------------------------------------------------LA-PQLQYLKLG 250 (478)
Q Consensus 223 ~L~~n~l~~~~~~~~~~---------------------------------------------------~~-~~L~~L~L~ 250 (478)
++++|.+++..|..+.. .. ++|++|+++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 88887776544433221 11 125555555
Q ss_pred CccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCC-----------CCccCcCCCCEEEc
Q 045209 251 HNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDP-----------FPVMNVKGIESLDL 319 (478)
Q Consensus 251 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------~~~~~~~~L~~L~l 319 (478)
+|.+++..+..++.+++|++|++++|.+++..|..+..+++|+.|++++|...+. ..+..+++|++|++
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred CCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 5555554455555555666666666655555555555555555555555433211 12335677888888
Q ss_pred cCCCCCCCCCCccccCCCCccEEEccCCCCccc-CCCCcc--ccccCCcEEEccCCcccccCccccccCCCCcEEECcCC
Q 045209 320 SYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMN-LNNWKP--AQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGS 396 (478)
Q Consensus 320 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~--~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n 396 (478)
++|.++ +..+..+..+++|++|++++|.+... ++.... .....|+.|++++|++++..+..+..+++|++|++++|
T Consensus 337 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 337 EDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence 888774 45566677777888888777764322 111111 11123567777777777666666666777777777777
Q ss_pred cCcccC--CCccCCCCCCEEECCCCcCc--------------------------ccCCccC---CCCCeeeccCCccccc
Q 045209 397 KLKFNM--DSLRIVKTLKVLDLSRNLVF--------------------------GKLPKAI---SGLDKLNVSFNNLCGE 445 (478)
Q Consensus 397 ~l~~~~--~~~~~l~~L~~L~Ls~N~l~--------------------------~~~p~~l---~~L~~L~ls~N~l~~~ 445 (478)
++.+.. ..+..+++|++|++++|++. +.+|..+ .+|+.|++++|++++
T Consensus 416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~- 494 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN- 494 (680)
T ss_dssp CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC-
T ss_pred cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc-
Confidence 665432 24455555555555555543 3345444 467888888888874
Q ss_pred CCCC
Q 045209 446 IPKT 449 (478)
Q Consensus 446 ip~~ 449 (478)
+|+.
T Consensus 495 i~~~ 498 (680)
T 1ziw_A 495 INDD 498 (680)
T ss_dssp CCTT
T ss_pred CChh
Confidence 4443
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-38 Score=335.08 Aligned_cols=137 Identities=16% Similarity=0.058 Sum_probs=78.9
Q ss_pred CCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCc--------cccccCCCCcEEECcCCcCcc
Q 045209 329 IPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPV--------ELLNRTDYLVEFRASGSKLKF 400 (478)
Q Consensus 329 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~ls~n~l~~ 400 (478)
+|..+..+++|+.|++++|++++..+..... ...|++|++++|++++..+ ..+.++++|++|++++|+++.
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 550 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEG-LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhcc-ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC
Confidence 3444555555555555555555433332221 1225666666666654321 224556666666666666665
Q ss_pred cCC-CccCCCCCCEEECCCCcCcccCCccC---CCCCeeeccCCcccccCCC------CCCCCCcccCCCCCCCCC
Q 045209 401 NMD-SLRIVKTLKVLDLSRNLVFGKLPKAI---SGLDKLNVSFNNLCGEIPK------TKFPASAFVGNECLCGPP 466 (478)
Q Consensus 401 ~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~L~~L~ls~N~l~~~ip~------~~~~~~~~~~n~~lc~~~ 466 (478)
.++ .|..+++|+.|+|++|++++..+..| .+|+.|++++|++++..|. ..+....+.+|++.|.+.
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 543 46667777777777777765554443 4677777777777754442 134455677888888765
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.5e-39 Score=336.77 Aligned_cols=347 Identities=20% Similarity=0.171 Sum_probs=265.7
Q ss_pred CCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEE
Q 045209 96 KNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLK 175 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 175 (478)
+++++|+++++ .+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 78999999998 88888888999999999999999999988888999999999999999999988899999999999999
Q ss_pred eecccCCCCCCccCCCCCCCCEEEccCCCCCC-CCchhhhCCCCCcEEEcccCcCccccchHHHhccccC----cEEEcc
Q 045209 176 LGQNFLTGAIPNGISQLKNLTYLDLQHNQLSG-AIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQL----QYLKLG 250 (478)
Q Consensus 176 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L----~~L~L~ 250 (478)
+++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+. +| ++|+++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR-ENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH-HCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh-ccccccceeecc
Confidence 99999997777889999999999999999986 5699999999999999999999976666665553 44 478888
Q ss_pred CccCCCCCCcc---------------------------------------------------------------------
Q 045209 251 HNVLSGKVPDF--------------------------------------------------------------------- 261 (478)
Q Consensus 251 ~n~l~~~~~~~--------------------------------------------------------------------- 261 (478)
+|.+++..+..
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 88776433222
Q ss_pred ---------------------------------cCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCc
Q 045209 262 ---------------------------------LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPV 308 (478)
Q Consensus 262 ---------------------------------l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 308 (478)
+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|...+..+.
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~~~ 346 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISFKK 346 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEECCC
T ss_pred ccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccchhh
Confidence 22223444444444444 2333 22 334444444444422222222
Q ss_pred c--------------------------CcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCcccccc
Q 045209 309 M--------------------------NVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTY 362 (478)
Q Consensus 309 ~--------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 362 (478)
. .+++|++|++++|.+ ..+|..+..+++|+.|++++|.+.+..+........
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE--EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc--ccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 2 344555555555554 334556677777777788777777665522222233
Q ss_pred CCcEEEccCCcccccCccccccCCCCcEEECcCCcCcc--cCCCccCCCCCCEEECCCCcCcccCCccC---CCCCeeec
Q 045209 363 FYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKF--NMDSLRIVKTLKVLDLSRNLVFGKLPKAI---SGLDKLNV 437 (478)
Q Consensus 363 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~L~~L~l 437 (478)
.|++|++++|.+.+..+..+..+++|++|++++|++++ .+..+..+++|++|++++|++++..|..+ .+|++|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 47999999999999888889999999999999999987 45678899999999999999999888765 57899999
Q ss_pred cCCcccccCCCC
Q 045209 438 SFNNLCGEIPKT 449 (478)
Q Consensus 438 s~N~l~~~ip~~ 449 (478)
++|++++.+|..
T Consensus 505 s~N~l~~~~~~~ 516 (606)
T 3vq2_A 505 SHNNLLFLDSSH 516 (606)
T ss_dssp CSSCCSCEEGGG
T ss_pred CCCcCCCcCHHH
Confidence 999999876753
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-39 Score=349.08 Aligned_cols=374 Identities=21% Similarity=0.239 Sum_probs=243.6
Q ss_pred CCEEEEEcCCCCCCCCCcceeec-ccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcc--cC
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTI-SSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPAN--IG 142 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~--l~ 142 (478)
.+++.|+++++ ...+.+ |..+.++++|++|+++++ .+.+..|+.|.++++|++|++++|.+++.+|.. +.
T Consensus 48 ~~L~~LdLs~n------~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 48 EQLQLLELGSQ------YTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp CSCSEEEECTT------CCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred ccCeEEeCCCC------CCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 35666676653 233344 445666666666666665 555555666666666666666666666544443 55
Q ss_pred CCCCCCEEEeecCcCCCCCc-hhhcCCCCCCEEEeecccCCCCCCcc--------------------------CCCC---
Q 045209 143 KLTQLEALSFSGNRFTGPIP-SSISQLTQLTQLKLGQNFLTGAIPNG--------------------------ISQL--- 192 (478)
Q Consensus 143 ~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------------l~~l--- 192 (478)
++++|++|++++|.+++..+ ..|.++++|++|++++|.+++..+.. +..+
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 66666666666666654433 34566666666666666554332221 1111
Q ss_pred -----------------------------------------------------------------CCCCEEEccCCCCCC
Q 045209 193 -----------------------------------------------------------------KNLTYLDLQHNQLSG 207 (478)
Q Consensus 193 -----------------------------------------------------------------~~L~~L~l~~n~l~~ 207 (478)
++|++|++++|.+.+
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 234444444444444
Q ss_pred CCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhc
Q 045209 208 AIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFS 287 (478)
Q Consensus 208 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 287 (478)
..+..+..+++|+.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 359 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred cChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence 444555566666777777776665555555554 3777777777777766666777777777777777777666566677
Q ss_pred CCCCCCEEeccCCcCCCCCC------------------------------------------ccCcCCCCEEEccCCCCC
Q 045209 288 NLTKIFNLNLAYNSLTDPFP------------------------------------------VMNVKGIESLDLSYNQFH 325 (478)
Q Consensus 288 ~l~~L~~L~L~~n~l~~~~~------------------------------------------~~~~~~L~~L~l~~n~l~ 325 (478)
.+++|+.|++++|.+++... ...+++|++|++++|+++
T Consensus 360 ~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 77777777777776654211 013455666666666653
Q ss_pred CCCCCccccCCCCccEEEccCCCCcccCC-----CCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcc
Q 045209 326 LQQIPSWVTSSPIIFSLKLAKCGIKMNLN-----NWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKF 400 (478)
Q Consensus 326 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 400 (478)
.......+..+++|+.|++++|.+++..+ .... ....|++|++++|++++.++..|.++++|++|++++|++++
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE-GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS-CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred ccccccccccCCccccccCCCCccccccccccchhhhc-CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 11112234556788888888888863322 2222 22347999999999999999999999999999999999998
Q ss_pred cCCCccCCCCCCEEECCCCcCcccCCccCCCCCeeeccCCcccccCCCC
Q 045209 401 NMDSLRIVKTLKVLDLSRNLVFGKLPKAISGLDKLNVSFNNLCGEIPKT 449 (478)
Q Consensus 401 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ls~N~l~~~ip~~ 449 (478)
.++.... ++|+.|+|++|++++.+|..+.+|+.|++++|++....+..
T Consensus 519 l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 519 LSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSCC
T ss_pred cChhhhh-ccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccccH
Confidence 7754333 89999999999999999999999999999999998766544
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=328.20 Aligned_cols=379 Identities=19% Similarity=0.227 Sum_probs=278.3
Q ss_pred CCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCC
Q 045209 65 GDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKL 144 (478)
Q Consensus 65 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l 144 (478)
..+++.|+++++ .+.+..|..+.++++|++|+++++ .+.+..|+.|.++++|++|++++|.++ .+|.. .+
T Consensus 20 ~~~L~~L~Ls~n------~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l 89 (520)
T 2z7x_B 20 SQKTTILNISQN------YISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PT 89 (520)
T ss_dssp CTTCSEEECCSS------CCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CC
T ss_pred cccccEEECCCC------cccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCcee-ecCcc--cc
Confidence 367899999874 477777778899999999999997 788888888999999999999999998 56655 78
Q ss_pred CCCCEEEeecCcCCC-CCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCC--CEEEccCCCC--CCCCchhhhC----
Q 045209 145 TQLEALSFSGNRFTG-PIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNL--TYLDLQHNQL--SGAIPDIFSS---- 215 (478)
Q Consensus 145 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~---- 215 (478)
++|++|++++|.+++ .+|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccc
Confidence 999999999999987 467889999999999999998875 356667777 8888888888 5555544433
Q ss_pred ----------------------CCCCcEEEcccC------------------------------cCccccchHHHh--cc
Q 045209 216 ----------------------LKKLLFLTLSFN------------------------------KFSGNIPTSIAS--LA 241 (478)
Q Consensus 216 ----------------------l~~L~~L~L~~n------------------------------~l~~~~~~~~~~--~~ 241 (478)
+++|+.+++++| .+++..+..+.. ..
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 246 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHT
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhh
Confidence 334444444444 333322222211 01
Q ss_pred ccCcEEEccCccCCCCCCccc-----CCCCCCCEEeccCCcCCccch-hhhcCC---CCCCEEeccCCcCCCCCCccCcC
Q 045209 242 PQLQYLKLGHNVLSGKVPDFL-----GKFHSLDTLDLSWNQFSGTLP-KSFSNL---TKIFNLNLAYNSLTDPFPVMNVK 312 (478)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~ 312 (478)
++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+......++
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~ 324 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence 378889999998888888877 7888888888888887 344 444433 67888888888887654336788
Q ss_pred CCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcc--cCCCCccccccCCcEEEccCCcccc-cCccccccCCCCc
Q 045209 313 GIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKM--NLNNWKPAQTYFYDYIDLSENEISG-GPVELLNRTDYLV 389 (478)
Q Consensus 313 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~ 389 (478)
+|++|++++|+++ +.+|..+..+++|++|++++|++.+ .+|..... ...|++|++++|.+++ .+...+..+++|+
T Consensus 325 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 325 PFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred cccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCcccccchhccCccCC
Confidence 8999999999884 6678888888899999999988875 33322221 2237889999998888 4444577888899
Q ss_pred EEECcCCcCcccCC-CccCCCCCCEEECCCCcCcccCCcc---CCCCCeeeccCCcccccCCCCCCC------CCcccCC
Q 045209 390 EFRASGSKLKFNMD-SLRIVKTLKVLDLSRNLVFGKLPKA---ISGLDKLNVSFNNLCGEIPKTKFP------ASAFVGN 459 (478)
Q Consensus 390 ~L~ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~L~~L~ls~N~l~~~ip~~~~~------~~~~~~n 459 (478)
+|++++|++++..+ .+. ++|+.|++++|+|+ .+|.. +.+|++|++++|+++ .+|...|. ...+.+|
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCC
Confidence 99999988875442 222 68888999999886 56654 467888899999887 67765332 2345566
Q ss_pred CCCCC
Q 045209 460 ECLCG 464 (478)
Q Consensus 460 ~~lc~ 464 (478)
+..|.
T Consensus 479 ~~~c~ 483 (520)
T 2z7x_B 479 PWDCS 483 (520)
T ss_dssp CBCCC
T ss_pred CCccc
Confidence 66554
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.6e-38 Score=326.64 Aligned_cols=189 Identities=18% Similarity=0.156 Sum_probs=162.0
Q ss_pred ecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhc
Q 045209 87 TISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSIS 166 (478)
Q Consensus 87 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 166 (478)
.+|+.+. ++|++|+++++ .+.+..|..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SCCSCCC--TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred cccccCC--CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 4555443 79999999998 78888888999999999999999999988888999999999999999999988888899
Q ss_pred CCCCCCEEEeecccCCC-CCCccCCCCCCCCEEEccCCCCCCCC-chhhhCCCCCcEEEcccCcCccccchHHHhccccC
Q 045209 167 QLTQLTQLKLGQNFLTG-AIPNGISQLKNLTYLDLQHNQLSGAI-PDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQL 244 (478)
Q Consensus 167 ~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L 244 (478)
++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+ +..+..+++|++|++++|.+++..|..+..+. +|
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L 174 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR-DI 174 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS-EE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc-cC
Confidence 99999999999999986 35678999999999999999854444 46899999999999999999988888888775 99
Q ss_pred cEEEccCccCCCCCCcc-cCCCCCCCEEeccCCcCCc
Q 045209 245 QYLKLGHNVLSGKVPDF-LGKFHSLDTLDLSWNQFSG 280 (478)
Q Consensus 245 ~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~ 280 (478)
++|++++|.+.. ++.. +..+++|++|++++|++++
T Consensus 175 ~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 175 HHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ceEecccCcccc-cchhhHhhcccccEEEccCCcccc
Confidence 999999998863 3433 3457777888877777664
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=322.98 Aligned_cols=388 Identities=19% Similarity=0.214 Sum_probs=297.1
Q ss_pred CCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCC
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLT 145 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~ 145 (478)
.+++.|++++. .+.+..+..+.++++|++|+++++ .+.+..|..|.++++|++|++++|.+++..+..+.+++
T Consensus 52 ~~L~~L~Ls~n------~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 52 PELQVLDLSRC------EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp SSCCEEECTTC------CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred CCceEEECCCC------cCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccc
Confidence 46888999874 477777778899999999999987 67777778899999999999999998865555788999
Q ss_pred CCCEEEeecCcCCC-CCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCC----CEEEccCCCCCCC------------
Q 045209 146 QLEALSFSGNRFTG-PIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNL----TYLDLQHNQLSGA------------ 208 (478)
Q Consensus 146 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~~------------ 208 (478)
+|++|++++|.+++ .+|..+.++++|++|++++|++++..+..++.+++| +++++++|.+.+.
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 99999999999886 368889999999999999988876655555555555 5566655544322
Q ss_pred ---------------------------------------------------------------------CchhhhCCCCC
Q 045209 209 ---------------------------------------------------------------------IPDIFSSLKKL 219 (478)
Q Consensus 209 ---------------------------------------------------------------------~~~~l~~l~~L 219 (478)
.+..+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 12333445667
Q ss_pred cEEEcccCcCccccchHHHhc-------------------cccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCc
Q 045209 220 LFLTLSFNKFSGNIPTSIASL-------------------APQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSG 280 (478)
Q Consensus 220 ~~L~L~~n~l~~~~~~~~~~~-------------------~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 280 (478)
++|++++|.+. .+|..+... .++|++|++++|.+.+..+. ..+++|++|++++|.+++
T Consensus 285 ~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~ 361 (570)
T 2z63_A 285 SSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSF 361 (570)
T ss_dssp SEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBE
T ss_pred cEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCc
Confidence 77777766665 455443332 12445555555544433332 577899999999999886
Q ss_pred cc--hhhhcCCCCCCEEeccCCcCCCCCC-ccCcCCCCEEEccCCCCCCCCCC-ccccCCCCccEEEccCCCCcccCCCC
Q 045209 281 TL--PKSFSNLTKIFNLNLAYNSLTDPFP-VMNVKGIESLDLSYNQFHLQQIP-SWVTSSPIIFSLKLAKCGIKMNLNNW 356 (478)
Q Consensus 281 ~~--~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~ 356 (478)
.. +..+..+++|++|++++|.+++..+ ...+++|++|++++|.+. ...+ ..+..+++|++|++++|.+.+..|..
T Consensus 362 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 440 (570)
T 2z63_A 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440 (570)
T ss_dssp EEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE-SCTTSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred cccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccc-cccchhhhhcCCCCCEEeCcCCcccccchhh
Confidence 54 6788999999999999999886443 557899999999999984 3333 56889999999999999999877765
Q ss_pred ccccccCCcEEEccCCccc-ccCccccccCCCCcEEECcCCcCccc-CCCccCCCCCCEEECCCCcCcccCCccC---CC
Q 045209 357 KPAQTYFYDYIDLSENEIS-GGPVELLNRTDYLVEFRASGSKLKFN-MDSLRIVKTLKVLDLSRNLVFGKLPKAI---SG 431 (478)
Q Consensus 357 ~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~ 431 (478)
..... .|++|++++|.+. +.+|..+..+++|++|++++|++++. +..+..+++|++|++++|++++..|..+ .+
T Consensus 441 ~~~l~-~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 441 FNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp TTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhcCC-cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence 44333 4899999999998 57888999999999999999999987 4678899999999999999998877665 57
Q ss_pred CCeeeccCCcccccCCCCCCC-------CCcccCCCCCCCCC
Q 045209 432 LDKLNVSFNNLCGEIPKTKFP-------ASAFVGNECLCGPP 466 (478)
Q Consensus 432 L~~L~ls~N~l~~~ip~~~~~-------~~~~~~n~~lc~~~ 466 (478)
|+.|++++|++++..|...+- ...+.+.+ .|..+
T Consensus 520 L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 520 LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp CCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred CcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence 899999999999999865321 12344444 77654
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.2e-38 Score=316.40 Aligned_cols=365 Identities=17% Similarity=0.165 Sum_probs=301.2
Q ss_pred CCCcccc--eeeCC---------CCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCccccc-CccCCCC
Q 045209 53 DCCTWTG--ITCLS---------GDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNF-PDFISGL 120 (478)
Q Consensus 53 ~~c~w~g--v~C~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l 120 (478)
..|.|.+ |.|+. ..+++.|++++. .+.+..|..+.++++|++|+++++ .+.+.+ +..|.++
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n------~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l 78 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLN------SIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGL 78 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSS------CCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTC
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCC------ccCcCChhHhccCccccEEECcCC-cccceECccccccc
Confidence 4465554 77752 257899999974 578888899999999999999997 666554 5679999
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchh--hcCCCCCCEEEeecccCCCCCCcc-CCCCCCCCE
Q 045209 121 PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSS--ISQLTQLTQLKLGQNFLTGAIPNG-ISQLKNLTY 197 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~ 197 (478)
++|++|++++|.+++..|..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 99999999999999888999999999999999999998755555 889999999999999999877776 889999999
Q ss_pred EEccCCCCCCCCchhhhCC--CCCcEEEcccCcCccccchHH--------HhccccCcEEEccCccCCCCCCcccCC---
Q 045209 198 LDLQHNQLSGAIPDIFSSL--KKLLFLTLSFNKFSGNIPTSI--------ASLAPQLQYLKLGHNVLSGKVPDFLGK--- 264 (478)
Q Consensus 198 L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~--------~~~~~~L~~L~L~~n~l~~~~~~~l~~--- 264 (478)
|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+..+ ... ++|++|++++|.+++..+..+..
T Consensus 159 L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhcccc
Confidence 9999999998888887766 689999999999875333221 122 48999999999998877766543
Q ss_pred CCCCCEEeccCCcCCccc----------hhhhc--CCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCCCCCCCC
Q 045209 265 FHSLDTLDLSWNQFSGTL----------PKSFS--NLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFHLQQIP 330 (478)
Q Consensus 265 l~~L~~L~L~~n~l~~~~----------~~~l~--~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~ 330 (478)
.++|+.|++++|...+.. +..+. ..++|+.|++++|.+++..+ +..+++|++|++++|.++ +..|
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~ 316 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccCh
Confidence 388999999988654321 11222 23689999999999987544 457899999999999994 5567
Q ss_pred ccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCC-CccCCC
Q 045209 331 SWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMD-SLRIVK 409 (478)
Q Consensus 331 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~ 409 (478)
..+..+++|++|++++|.+.+..+...... ..|++|++++|++++..+..+..+++|++|++++|++++.++ .+..++
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENL-DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcCc-ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 789999999999999999987666544333 348999999999999999999999999999999999998775 568899
Q ss_pred CCCEEECCCCcCcccCCc
Q 045209 410 TLKVLDLSRNLVFGKLPK 427 (478)
Q Consensus 410 ~L~~L~Ls~N~l~~~~p~ 427 (478)
+|++|++++|++++..|.
T Consensus 396 ~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCCEEECCSSCBCCCTTT
T ss_pred cccEEEccCCCcccCCCc
Confidence 999999999999998873
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-37 Score=305.53 Aligned_cols=374 Identities=17% Similarity=0.154 Sum_probs=248.7
Q ss_pred CCCCCCCCCCCc-ccceeeCCCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCC
Q 045209 45 LSSWKPGTDCCT-WTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPEL 123 (478)
Q Consensus 45 ~~~w~~~~~~c~-w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 123 (478)
+++|.++.+||. |.+..|.. ..+.+... .........-..++++++++++++ .+....+..+..+++|
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~----~~~~i~~~------~~~~~~~~~~~~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L 71 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVF----YDVHIDMQ------TQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQV 71 (390)
T ss_dssp ----CCEECBCC------EEE----ESCEECSS------CCCCEESCSSGGGCCCSEEEEESC-EESEECTHHHHHCCCC
T ss_pred cCCCCCccceehhhhhhccce----eeeeeecc------cccccccccccccCCceEEEecCC-chhhCChhHhcccccC
Confidence 467888777774 55555531 11111211 011112222345788999999886 5544444456788999
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCC
Q 045209 124 KYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHN 203 (478)
Q Consensus 124 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 203 (478)
++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence 99999999988777778889999999999999998877888889999999999999988544444688899999999999
Q ss_pred CCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccch
Q 045209 204 QLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLP 283 (478)
Q Consensus 204 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 283 (478)
.+.+..+..+..+++|++|++++|.+++. + +..+ ++|++|++++|.+++ +...++|++|++++|.+... |
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l-~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~ 221 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-R 221 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGC-TTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-E
T ss_pred ccCccChhhccCCCCCCEEECCCCcCCcc-c--cccc-cccceeecccccccc-----cCCCCcceEEECCCCeeeec-c
Confidence 99877777888889999999999888743 2 2233 478888888877663 23445677777777777633 3
Q ss_pred hhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccC
Q 045209 284 KSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYF 363 (478)
Q Consensus 284 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 363 (478)
.. ..++|+.|++++|.+++......+++|++|++++|.++ +..|..+..+++|++
T Consensus 222 ~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~---------------------- 276 (390)
T 3o6n_A 222 GP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLER---------------------- 276 (390)
T ss_dssp CC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCE----------------------
T ss_pred cc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCC-CcChhHccccccCCE----------------------
Confidence 22 23566666666666666544555666666666666653 333445555555544
Q ss_pred CcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCccCCCCCeeeccCCccc
Q 045209 364 YDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAISGLDKLNVSFNNLC 443 (478)
Q Consensus 364 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ls~N~l~ 443 (478)
|++++|++++. +..+..+++|++|++++|+++..++.+..+++|++|++++|++++.....+.+|+.|++++|++.
T Consensus 277 ---L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 277 ---LYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ---EECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEE
T ss_pred ---EECCCCcCccc-CcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCcc
Confidence 55555555443 22335567778888888877776666777788888888888887766666778888888888886
Q ss_pred ccCCCC---CCCCCcccCCCCCCCCCCC
Q 045209 444 GEIPKT---KFPASAFVGNECLCGPPLP 468 (478)
Q Consensus 444 ~~ip~~---~~~~~~~~~n~~lc~~~~~ 468 (478)
..-... .++...+.++...|..+..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 380 (390)
T 3o6n_A 353 CNSLRALFRNVARPAVDDADQHCKIDYQ 380 (390)
T ss_dssp HHHHHHHTTTCCTTTBCCCCSCCCTTCE
T ss_pred chhHHHHHHHHHhhcccccCceeccccc
Confidence 532211 4445567778888876543
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.8e-37 Score=320.85 Aligned_cols=375 Identities=17% Similarity=0.156 Sum_probs=258.8
Q ss_pred CCCCCCCCCCCCCCCCc----ccceeeCCCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCc
Q 045209 40 DPSGMLSSWKPGTDCCT----WTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPD 115 (478)
Q Consensus 40 ~~~~~~~~w~~~~~~c~----w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 115 (478)
+....+++|.++.+||. |.++.|+. .++-.+. .......-..+.+++.++++++ .+....+.
T Consensus 4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~-----~i~~~~~--------~~~~~~~~l~l~~l~~l~l~~~-~l~~lp~~ 69 (597)
T 3oja_B 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDV-----HIDMQTQ--------DVYFGFEDITLNNQKIVTFKNS-TMRKLPAA 69 (597)
T ss_dssp -------CCCSEECCCCC--CCSEEECSC-----EECSSCC--------CCEESCSSGGGCCCSEEEESSC-EESEECTH
T ss_pred cccccccCCCCCCcCcccCcCceeEecCc-----eeccccc--------ccccCcccccCCCceEEEeeCC-CCCCcCHH
Confidence 33455678988877773 55555431 1111111 1111112235788899999886 55555555
Q ss_pred cCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCC
Q 045209 116 FISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNL 195 (478)
Q Consensus 116 ~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 195 (478)
.+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 67889999999999999987777789999999999999999998878888999999999999999985555557889999
Q ss_pred CEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccC
Q 045209 196 TYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSW 275 (478)
Q Consensus 196 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 275 (478)
++|++++|.+.+..|..+..+++|++|++++|.+++. + +..+ ++|+.|++++|.+++ +...++|+.|++++
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l-~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLI-PSLFHANVSYNLLST-----LAIPIAVEELDASH 220 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGC-TTCSEEECCSSCCSE-----EECCTTCSEEECCS
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhh-hhhhhhhcccCcccc-----ccCCchhheeeccC
Confidence 9999999999888888888899999999999988743 2 2223 478888888877763 23445677777777
Q ss_pred CcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCC
Q 045209 276 NQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNN 355 (478)
Q Consensus 276 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 355 (478)
|.+... +..+ .++|+.|++++|.+++......+++|++|++++|.++ +..|..+..+++|
T Consensus 221 n~l~~~-~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L---------------- 280 (597)
T 3oja_B 221 NSINVV-RGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRL---------------- 280 (597)
T ss_dssp SCCCEE-ECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSC----------------
T ss_pred Cccccc-cccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccC-CCCHHHhcCccCC----------------
Confidence 777633 2221 2466666666666666544455566666666666653 3344455555555
Q ss_pred CccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCccCCCCCee
Q 045209 356 WKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAISGLDKL 435 (478)
Q Consensus 356 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L 435 (478)
+.|++++|.+++. +..+..+++|++|++++|+++..++.+..+++|+.|+|++|++++..+..+.+|+.|
T Consensus 281 ---------~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L 350 (597)
T 3oja_B 281 ---------ERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350 (597)
T ss_dssp ---------CEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEE
T ss_pred ---------CEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEE
Confidence 5555555555543 333455777888888888888777677778888888888888877766777888899
Q ss_pred eccCCcccccCCCC---CCCCCcccCCCCCCCCCC
Q 045209 436 NVSFNNLCGEIPKT---KFPASAFVGNECLCGPPL 467 (478)
Q Consensus 436 ~ls~N~l~~~ip~~---~~~~~~~~~n~~lc~~~~ 467 (478)
++++|++.+..+.. .+....+.++...|+...
T Consensus 351 ~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 385 (597)
T 3oja_B 351 TLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY 385 (597)
T ss_dssp ECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTTC
T ss_pred EeeCCCCCChhHHHHHHHHhhhccccccccCCcch
Confidence 99999887653322 445566788888897643
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-36 Score=314.91 Aligned_cols=386 Identities=18% Similarity=0.182 Sum_probs=246.3
Q ss_pred ccceeeCCCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCC
Q 045209 57 WTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQ 136 (478)
Q Consensus 57 w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~ 136 (478)
++++......+++.|+++++ .+.+..+..+.++++|++|+++++ .+.+..|+.|.++++|++|++++|.++ .
T Consensus 43 L~~ip~~~~~~L~~L~Ls~N------~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 114 (562)
T 3a79_B 43 LTHVPKDLPPRTKALSLSQN------SISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQ-N 114 (562)
T ss_dssp CCSCCTTSCTTCCEEECCSS------CCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCC-E
T ss_pred CccCCCCCCCCcCEEECCCC------CccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCC-c
Confidence 44444444467888888874 466666778888899999999887 777777888888899999999999887 5
Q ss_pred CCcccCCCCCCCEEEeecCcCCCC-CchhhcCCCCCCEEEeecccCCCCCCccCCCCCCC--CEEEccCCCC--CCCCch
Q 045209 137 IPANIGKLTQLEALSFSGNRFTGP-IPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNL--TYLDLQHNQL--SGAIPD 211 (478)
Q Consensus 137 ~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~ 211 (478)
+|.. .+++|++|++++|++++. .|..|.++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|.
T Consensus 115 lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~ 189 (562)
T 3a79_B 115 ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETE 189 (562)
T ss_dssp ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCC
T ss_pred cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcc
Confidence 6665 788899999999988863 457888889999999999888753 34444555 8899988888 555555
Q ss_pred hhhC--------------------------CCCCcEEEcccCc----------------------------CccccchHH
Q 045209 212 IFSS--------------------------LKKLLFLTLSFNK----------------------------FSGNIPTSI 237 (478)
Q Consensus 212 ~l~~--------------------------l~~L~~L~L~~n~----------------------------l~~~~~~~~ 237 (478)
.+.. +++|+.+++++|. +.+.....+
T Consensus 190 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~ 269 (562)
T 3a79_B 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269 (562)
T ss_dssp EEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHH
T ss_pred cccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHH
Confidence 4443 3345555555542 111000000
Q ss_pred ---HhccccCcEEEccCccCCCCCCccc-----CCCCCCCEEeccCCcCCccch-hhhc---CCCCCCEEeccCCcCCCC
Q 045209 238 ---ASLAPQLQYLKLGHNVLSGKVPDFL-----GKFHSLDTLDLSWNQFSGTLP-KSFS---NLTKIFNLNLAYNSLTDP 305 (478)
Q Consensus 238 ---~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~---~l~~L~~L~L~~n~l~~~ 305 (478)
... ++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|++|++++|.+...
T Consensus 270 ~~~~~~-~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 270 FQFFWP-RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHTT-SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHhhhc-ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccc
Confidence 011 267777888887777777655 4455555555555544 222 1221 124577777777776554
Q ss_pred CCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCccc--CCCCccccccCCcEEEccCCcccc-cCcccc
Q 045209 306 FPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMN--LNNWKPAQTYFYDYIDLSENEISG-GPVELL 382 (478)
Q Consensus 306 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l 382 (478)
.....+++|++|++++|.++ +.+|..+..+++|++|++++|++++. +|..... ...|++|++++|++++ .++..+
T Consensus 347 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-MSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp CCCSSCCCCCEEECCSSCCC-TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-CTTCCEEECTTSCCBSCCSSCCC
T ss_pred cCccCCCCceEEECCCCccc-cchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-CCCCCEEECCCCcCCCccChhhh
Confidence 33356677777777777774 55666677777777777777777642 1221111 1236777777777776 444456
Q ss_pred ccCCCCcEEECcCCcCcccCCCccCC-CCCCEEECCCCcCcccCCcc---CCCCCeeeccCCcccccCCCCCC------C
Q 045209 383 NRTDYLVEFRASGSKLKFNMDSLRIV-KTLKVLDLSRNLVFGKLPKA---ISGLDKLNVSFNNLCGEIPKTKF------P 452 (478)
Q Consensus 383 ~~l~~L~~L~ls~n~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~---l~~L~~L~ls~N~l~~~ip~~~~------~ 452 (478)
..+++|++|++++|++++..+. .+ ++|+.|+|++|+|+ .+|.. +++|++|++++|+++ .+|...+ .
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~--~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ 500 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGS--SCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred cCcccCCEEECCCCCCCcchhh--hhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence 6677777777777777653321 12 57777777777775 45543 346677777777776 5665422 2
Q ss_pred CCcccCCCCCCC
Q 045209 453 ASAFVGNECLCG 464 (478)
Q Consensus 453 ~~~~~~n~~lc~ 464 (478)
...+.+|++.|.
T Consensus 501 ~L~l~~N~~~c~ 512 (562)
T 3a79_B 501 YIWLHDNPWDCT 512 (562)
T ss_dssp CEECCSCCBCCC
T ss_pred EEEecCCCcCCC
Confidence 334556666654
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.6e-36 Score=314.30 Aligned_cols=392 Identities=19% Similarity=0.184 Sum_probs=267.4
Q ss_pred CCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCC
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLT 145 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~ 145 (478)
..++.|+|++ |.+++..+.+|.++++|++|+|++| .+.+..+.+|.++++|++|+|++|++++..+..|.+++
T Consensus 52 ~~~~~LdLs~------N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSF------NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTT------SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred cCCCEEEeeC------CCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 4789999987 4577777788999999999999998 78877788899999999999999999866667889999
Q ss_pred CCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCC-CCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCC----c
Q 045209 146 QLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGA-IPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKL----L 220 (478)
Q Consensus 146 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~ 220 (478)
+|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|.+++..+..+..+.++ .
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 999999999999977777799999999999999998753 57788899999999999999987777666544332 2
Q ss_pred EEEcccCcCccccchH------------------------HHhc------------------------------------
Q 045209 221 FLTLSFNKFSGNIPTS------------------------IASL------------------------------------ 240 (478)
Q Consensus 221 ~L~L~~n~l~~~~~~~------------------------~~~~------------------------------------ 240 (478)
.++++.|.+....+.. +...
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 4455544443111000 0000
Q ss_pred ------------------------------------------cccCcEEEccCccCCCCCCcc-----------------
Q 045209 241 ------------------------------------------APQLQYLKLGHNVLSGKVPDF----------------- 261 (478)
Q Consensus 241 ------------------------------------------~~~L~~L~L~~n~l~~~~~~~----------------- 261 (478)
...++.|++.+|.+.+..+..
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC
Confidence 012333333333322111100
Q ss_pred --cCCCCCCCEEeccCCcCCc--cchhhhcCCCCCCEEeccCCcCCC-CCCccCcCCCCEEEccCCCCCCCCCCccccCC
Q 045209 262 --LGKFHSLDTLDLSWNQFSG--TLPKSFSNLTKIFNLNLAYNSLTD-PFPVMNVKGIESLDLSYNQFHLQQIPSWVTSS 336 (478)
Q Consensus 262 --l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 336 (478)
...+++|+.+++++|.+.. ..+..+..+.+|+.+++..+.... ...+..+++|+.+++..++......+..+..+
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccc
Confidence 1122333333333333321 122223333344444444333322 11223556677777777665322233456777
Q ss_pred CCccEEEccCCCCcccCCCCccccccCCcEEEccCCcc-cccCccccccCCCCcEEECcCCcCcccC-CCccCCCCCCEE
Q 045209 337 PIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEI-SGGPVELLNRTDYLVEFRASGSKLKFNM-DSLRIVKTLKVL 414 (478)
Q Consensus 337 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L 414 (478)
++++.++++.|.+.+..+....... .+++|++++|.+ .+..|..|..+++|++|++++|++++.+ ..|..+++|++|
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccccccch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 8888888888888876665444333 378999999874 4557788899999999999999999875 568889999999
Q ss_pred ECCCCcCcccCCccC---CCCCeeeccCCcccccCCCC------CCCCCcccCCCCCCCC
Q 045209 415 DLSRNLVFGKLPKAI---SGLDKLNVSFNNLCGEIPKT------KFPASAFVGNECLCGP 465 (478)
Q Consensus 415 ~Ls~N~l~~~~p~~l---~~L~~L~ls~N~l~~~ip~~------~~~~~~~~~n~~lc~~ 465 (478)
+|++|+|++..|..| .+|++|+|++|++++..|.. .++...+.+|++.|.+
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999999988887765 57889999999998776653 1223456777777753
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.8e-36 Score=310.81 Aligned_cols=361 Identities=14% Similarity=0.144 Sum_probs=267.8
Q ss_pred CCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCC-CCCcccCCC
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSG-QIPANIGKL 144 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l 144 (478)
.+++.|+++++ .+.+..|..+.++++|++|+++++ .+. .+|.. .+++|++|++++|.+++ ..|..|.++
T Consensus 76 ~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l 145 (562)
T 3a79_B 76 SELRVLRLSHN------RIRSLDFHVFLFNQDLEYLDVSHN-RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNL 145 (562)
T ss_dssp TTCCEEECCSC------CCCEECTTTTTTCTTCCEEECTTS-CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGC
T ss_pred CCccEEECCCC------CCCcCCHHHhCCCCCCCEEECCCC-cCC-ccCcc--ccccCCEEECCCCCccccCchHhhccc
Confidence 57899999874 588888889999999999999997 665 56765 89999999999999986 346889999
Q ss_pred CCCCEEEeecCcCCCCCchhhcCCCCC--CEEEeecccC--CCCCCccCCC--------------------------CCC
Q 045209 145 TQLEALSFSGNRFTGPIPSSISQLTQL--TQLKLGQNFL--TGAIPNGISQ--------------------------LKN 194 (478)
Q Consensus 145 ~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~--------------------------l~~ 194 (478)
++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+.. +++
T Consensus 146 ~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 222 (562)
T 3a79_B 146 TKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222 (562)
T ss_dssp TTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEE
T ss_pred CcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccce
Confidence 9999999999999863 35555566 9999999998 6666655544 345
Q ss_pred CCEEEccCCCC----------------------------CCC----CchhhhCCCCCcEEEcccCcCccccchHHH----
Q 045209 195 LTYLDLQHNQL----------------------------SGA----IPDIFSSLKKLLFLTLSFNKFSGNIPTSIA---- 238 (478)
Q Consensus 195 L~~L~l~~n~l----------------------------~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---- 238 (478)
|+.+++++|.. .+. .+.. ...++|++|++++|.+++.+|..++
T Consensus 223 L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~ 301 (562)
T 3a79_B 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSE 301 (562)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCS
T ss_pred EEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhccc
Confidence 66666666631 100 0111 1234899999999999988887763
Q ss_pred -hccccCcEEEccCccCCCCCC-cccC---CCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC--ccCc
Q 045209 239 -SLAPQLQYLKLGHNVLSGKVP-DFLG---KFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNV 311 (478)
Q Consensus 239 -~~~~~L~~L~L~~n~l~~~~~-~~l~---~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~ 311 (478)
.+ +.|+.+++..+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+++..+ ...+
T Consensus 302 ~~L-~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 376 (562)
T 3a79_B 302 TAL-KSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376 (562)
T ss_dssp CSC-CEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSC
T ss_pred ccc-hheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhccc
Confidence 22 2444555555555 233 2222 1257899999999876332 12678899999999999887433 4578
Q ss_pred CCCCEEEccCCCCCCC-CCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcE
Q 045209 312 KGIESLDLSYNQFHLQ-QIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVE 390 (478)
Q Consensus 312 ~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 390 (478)
++|++|++++|+++.. .+|..+..+++|++|++++|.+.+.+|.........|++|++++|++++..+..+. ++|++
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~ 454 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence 8899999999988411 23456788899999999999998766654433344589999999999887766554 68999
Q ss_pred EECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCcc----CCCCCeeeccCCcccccCCC
Q 045209 391 FRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKA----ISGLDKLNVSFNNLCGEIPK 448 (478)
Q Consensus 391 L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~L~~L~ls~N~l~~~ip~ 448 (478)
|++++|+++..++.+..+++|++|+|++|++++ +|.. +.+|+.|++++|++.+..|.
T Consensus 455 L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp EECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred EECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 999999999877767788999999999999974 5543 35788899999999876653
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=318.41 Aligned_cols=360 Identities=15% Similarity=0.161 Sum_probs=274.0
Q ss_pred EEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCC
Q 045209 69 TSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLE 148 (478)
Q Consensus 69 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~ 148 (478)
+.+++++. .++ .+|..+. ++|++|+++++ .+.+..|..|.++++|++|++++|.+++..|..|.++++|+
T Consensus 3 ~~l~ls~n------~l~-~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKN------GLI-HVPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTS------CCS-SCCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCC------Ccc-ccccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence 35777764 455 4666555 89999999998 78887778899999999999999999988889999999999
Q ss_pred EEEeecCcCCCCCchhhcCCCCCCEEEeecccCCC-CCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCC--cEEEcc
Q 045209 149 ALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTG-AIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKL--LFLTLS 225 (478)
Q Consensus 149 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~ 225 (478)
+|++++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|+++
T Consensus 73 ~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 73 YLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp EEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred EEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence 9999999999 56665 89999999999999987 478899999999999999999985 456777888 999999
Q ss_pred cCcC--ccccchHHHhccccCcEEEccCccCCCCCCc-------------------------------ccCCCCCCCEEe
Q 045209 226 FNKF--SGNIPTSIASLAPQLQYLKLGHNVLSGKVPD-------------------------------FLGKFHSLDTLD 272 (478)
Q Consensus 226 ~n~l--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------------------~l~~l~~L~~L~ 272 (478)
+|.+ .+..|..+..+......+++++|.+.+.++. .+..+++|+.|+
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 9999 6677776655322223344444444433221 344555555666
Q ss_pred ccCCcCCccchhhh---cCCCCCCEEeccCCcCCCCCCc-------cCcC--------------------------CCCE
Q 045209 273 LSWNQFSGTLPKSF---SNLTKIFNLNLAYNSLTDPFPV-------MNVK--------------------------GIES 316 (478)
Q Consensus 273 L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~-------~~~~--------------------------~L~~ 316 (478)
+++|.+++..+..+ ...++|++|++++|.+++..+. ..++ +|+.
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSE
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeE
Confidence 65555543322211 1235788888888888754443 2233 3555
Q ss_pred EEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccc--cCccccccCCCCcEEECc
Q 045209 317 LDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISG--GPVELLNRTDYLVEFRAS 394 (478)
Q Consensus 317 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls 394 (478)
|++++|.+. ..+ ....+++|++|++++|.+++.+|....... .|++|++++|++++ ..|..+..+++|++|+++
T Consensus 307 L~l~~n~l~--~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 307 FTVSGTRMV--HML-CPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp EEEESSCCC--CCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred EEcCCCccc--ccc-chhhCCcccEEEeECCccChhhhhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 555555552 111 126788999999999999987776554333 48999999999997 456778999999999999
Q ss_pred CCcCcc-cCC-CccCCCCCCEEECCCCcCcccCCccC-CCCCeeeccCCcccccCCCC
Q 045209 395 GSKLKF-NMD-SLRIVKTLKVLDLSRNLVFGKLPKAI-SGLDKLNVSFNNLCGEIPKT 449 (478)
Q Consensus 395 ~n~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~L~~L~ls~N~l~~~ip~~ 449 (478)
+|++++ .+. .+..+++|++|++++|++++.+|..+ .+|+.|++++|+++ .+|..
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~ 439 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQ 439 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGG
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchh
Confidence 999997 553 47888999999999999999999888 58999999999998 88875
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.1e-35 Score=295.59 Aligned_cols=346 Identities=25% Similarity=0.336 Sum_probs=288.4
Q ss_pred CCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCC
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLT 145 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~ 145 (478)
.+++.+++.+.. +. .+| .+..+++|++|+++++ .+.+..+ +.++++|++|++++|.+.+..+ +.+++
T Consensus 46 ~~l~~L~l~~~~------i~-~l~-~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQADRLG------IK-SID-GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT 112 (466)
T ss_dssp HTCCEEECCSSC------CC-CCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred ccccEEecCCCC------Cc-cCc-chhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh--hcCCC
Confidence 468889988753 32 233 4788999999999997 6665544 8999999999999999985544 89999
Q ss_pred CCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcc
Q 045209 146 QLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLS 225 (478)
Q Consensus 146 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 225 (478)
+|++|++++|.+++. +. +..+++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+.. .+..+++|++|+++
T Consensus 113 ~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 113 NLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDIS 185 (466)
T ss_dssp TCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECC
T ss_pred CCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECc
Confidence 999999999999965 33 8999999999999999985 34 58999999999997 4555332 38899999999999
Q ss_pred cCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCC
Q 045209 226 FNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDP 305 (478)
Q Consensus 226 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 305 (478)
+|.+++ ++ .+..+ ++|++|++++|.+++..+ ++.+++|++|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 186 ~n~l~~-~~-~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 186 SNKVSD-IS-VLAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp SSCCCC-CG-GGGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCC-Ch-hhccC-CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence 999874 33 35555 599999999999987655 67899999999999999854 3688999999999999999998
Q ss_pred CCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccC
Q 045209 306 FPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRT 385 (478)
Q Consensus 306 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 385 (478)
.+...+++|++|++++|.++ .++. +..+++|+.|++++|.+.+..+ . .....|++|++++|++++..+ +..+
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L~~n~l~~~~~-~--~~l~~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 259 APLSGLTKLTELKLGANQIS--NISP-LAGLTALTNLELNENQLEDISP-I--SNLKNLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp GGGTTCTTCSEEECCSSCCC--CCGG-GTTCTTCSEEECCSSCCSCCGG-G--GGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred hhhhcCCCCCEEECCCCccC--cccc-ccCCCccCeEEcCCCcccCchh-h--cCCCCCCEEECcCCcCCCchh--hccC
Confidence 88888999999999999984 4555 7889999999999999986544 2 223358999999999999876 7889
Q ss_pred CCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCc-cCCCCCeeeccCCcccccCCC
Q 045209 386 DYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPK-AISGLDKLNVSFNNLCGEIPK 448 (478)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~L~~L~ls~N~l~~~ip~ 448 (478)
++|++|++++|++++. +.+..+++|+.|++++|++++..|- .+++|+.|++++|++++ +|.
T Consensus 331 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp TTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC-CCB
T ss_pred ccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC-Cch
Confidence 9999999999999976 5688899999999999999988872 35789999999999986 443
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=295.12 Aligned_cols=318 Identities=19% Similarity=0.182 Sum_probs=249.6
Q ss_pred CeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeec
Q 045209 99 GGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQ 178 (478)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 178 (478)
+.++.++. .+ ..+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~-~l-~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRK-RF-VAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSC-CC-SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCC-Cc-CcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555543 33 23454443 5889999999999977788899999999999999999988888899999999999999
Q ss_pred ccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCC
Q 045209 179 NFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKV 258 (478)
Q Consensus 179 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 258 (478)
|.++...+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSCC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCC-CCCCEEECCCCcCcccC
Confidence 99986666678899999999999999988888888999999999999999886666666666 48999999999998766
Q ss_pred CcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCcc--CcCCCCEEEccCCCCCCCCCC-ccccC
Q 045209 259 PDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVM--NVKGIESLDLSYNQFHLQQIP-SWVTS 335 (478)
Q Consensus 259 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~L~~L~l~~n~l~~~~~~-~~~~~ 335 (478)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.. ...+|++|++++|++ ..+| ..+..
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~ 246 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRH 246 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC--CSCCHHHHTT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc--cccCHHHhcC
Confidence 677888999999999999998777778888999999999988776543322 344788999999887 3455 45777
Q ss_pred CCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCC-CccCCCCCCEE
Q 045209 336 SPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMD-SLRIVKTLKVL 414 (478)
Q Consensus 336 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L 414 (478)
+++|+.|++++|.+.+..+..... ...|++|++++|++++..+..|..+++|++|++++|++++.++ .|..+++|+.|
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHE-LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTT-CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred ccccCeeECCCCcCCccChhhccc-cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 888888888888877554443322 2337888888888888777778888888888888888877653 45677788888
Q ss_pred ECCCCcCccc
Q 045209 415 DLSRNLVFGK 424 (478)
Q Consensus 415 ~Ls~N~l~~~ 424 (478)
+|++|.+...
T Consensus 326 ~l~~N~l~c~ 335 (477)
T 2id5_A 326 ILDSNPLACD 335 (477)
T ss_dssp ECCSSCEECS
T ss_pred EccCCCccCc
Confidence 8888877654
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.5e-35 Score=296.08 Aligned_cols=331 Identities=18% Similarity=0.168 Sum_probs=265.4
Q ss_pred CCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEE
Q 045209 96 KNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLK 175 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 175 (478)
+++++|+++++ .+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 57889999987 78877788899999999999999999877788899999999999999999866666788899999999
Q ss_pred eecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCC
Q 045209 176 LGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLS 255 (478)
Q Consensus 176 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 255 (478)
+++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+ ++|+.|++++|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL-HGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC-TTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc-CCCcEEeCCCCcCc
Confidence 99999988888889999999999999999988778888899999999999999985444445555 59999999999998
Q ss_pred CCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCCCCCCCCccc
Q 045209 256 GKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFHLQQIPSWV 333 (478)
Q Consensus 256 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~ 333 (478)
+..+..+..+++|++|++++|...+.++.......+|++|++++|.+++... +..+++|++|++++|.++ ...+..+
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 268 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSML 268 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSC
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhc
Confidence 7777788899999999999988877777777677799999999999887542 457889999999999984 4455668
Q ss_pred cCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCE
Q 045209 334 TSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKV 413 (478)
Q Consensus 334 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~ 413 (478)
..+++|++|++++|.+.+..|....... .|++|++++|++++..+..|..+++|++|++++|.+...............
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~ 347 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLN-YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWR 347 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCT-TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTS
T ss_pred cccccCCEEECCCCccceECHHHhcCcc-cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhc
Confidence 8899999999999999877666544333 489999999999998888889999999999999998754322111122223
Q ss_pred EECCCCcCcccCCccCC
Q 045209 414 LDLSRNLVFGKLPKAIS 430 (478)
Q Consensus 414 L~Ls~N~l~~~~p~~l~ 430 (478)
+++.++...-..|..+.
T Consensus 348 ~~~~~~~~~C~~p~~~~ 364 (477)
T 2id5_A 348 LNFNRQQPTCATPEFVQ 364 (477)
T ss_dssp SCCTTCCCBEEESGGGT
T ss_pred cccCccCceeCCchHHc
Confidence 34444444433444443
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.9e-34 Score=287.70 Aligned_cols=338 Identities=20% Similarity=0.194 Sum_probs=208.6
Q ss_pred CCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCC
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLT 145 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~ 145 (478)
.+++.+++++. .+.+. | .+..+++|++|+++++ .+.+. | ++.+++|++|++++|.+++. + +.+++
T Consensus 42 ~~L~~L~Ls~n------~l~~~-~-~l~~l~~L~~L~Ls~n-~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHNS------SITDM-T-GIEKLTGLTKLICTSN-NITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp TTCCEEECCSS------CCCCC-T-TGGGCTTCSEEECCSS-CCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred CCCCEEEccCC------CcccC-h-hhcccCCCCEEEccCC-cCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 46777777764 34442 3 5677777777777776 55553 3 67777777777777777753 3 67777
Q ss_pred CCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcc
Q 045209 146 QLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLS 225 (478)
Q Consensus 146 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 225 (478)
+|++|++++|++++. + +..+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|+++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 777777777777753 3 67777777777777777753 2667777777777777554444 35667777777777
Q ss_pred cCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCC
Q 045209 226 FNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDP 305 (478)
Q Consensus 226 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 305 (478)
+|.+++ +| +... ++|++|++++|.+++. .++.+++|++|++++|++++ +| +..+++|+.|++++|.+++.
T Consensus 179 ~n~l~~-l~--l~~l-~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 179 FNKITE-LD--VSQN-KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SSCCCC-CC--CTTC-TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCccce-ec--cccC-CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 777764 44 3334 4777777777777753 26677777777777777775 44 66777777777777777764
Q ss_pred CCccCcCCCCEEEccCCCCC---------CCCCCccccCCCCccEEEccCCCCcccCCCCc-------cccccCCcEEEc
Q 045209 306 FPVMNVKGIESLDLSYNQFH---------LQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWK-------PAQTYFYDYIDL 369 (478)
Q Consensus 306 ~~~~~~~~L~~L~l~~n~l~---------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-------~~~~~~L~~L~L 369 (478)
. ...+++|+.|++++|++. .+.+| ...+++|+.|++++|...+.+|... ......|++|++
T Consensus 249 ~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 249 D-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp C-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred C-HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence 3 344555555555444432 12222 2445666666666666554444210 001112444444
Q ss_pred cCCcccccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCccCCCCCeeeccCCcccccCCCC
Q 045209 370 SENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAISGLDKLNVSFNNLCGEIPKT 449 (478)
Q Consensus 370 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ls~N~l~~~ip~~ 449 (478)
++|++++. .+..+++|++|++++|++++ ++.|..|++++|++.|. ..+..|+.+++++|+++|.||..
T Consensus 326 ~~N~l~~l---~l~~l~~L~~L~l~~N~l~~-------l~~L~~L~l~~n~l~g~--~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 326 NNTELTEL---DVSHNTKLKSLSCVNAHIQD-------FSSVGKIPALNNNFEAE--GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TTCCCSCC---CCTTCTTCSEEECCSSCCCB-------CTTGGGSSGGGTSEEEE--EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCCccccc---ccccCCcCcEEECCCCCCCC-------ccccccccccCCcEEec--ceeeecCccccccCcEEEEcChh
Confidence 44444442 14444444455554444443 12333334444444443 22345788999999999999986
Q ss_pred CC
Q 045209 450 KF 451 (478)
Q Consensus 450 ~~ 451 (478)
.+
T Consensus 394 ~~ 395 (457)
T 3bz5_A 394 LL 395 (457)
T ss_dssp CB
T ss_pred Hh
Confidence 43
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-33 Score=284.60 Aligned_cols=322 Identities=24% Similarity=0.310 Sum_probs=273.0
Q ss_pred CCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCC
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLT 145 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~ 145 (478)
.+++.|++++. .+.+.. + +.++++|++|+++++ .+.+..+ +.++++|++|++++|.+++. +. +..++
T Consensus 68 ~~L~~L~Ls~n------~l~~~~-~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~ 134 (466)
T 1o6v_A 68 NNLTQINFSNN------QLTDIT-P-LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLT 134 (466)
T ss_dssp TTCCEEECCSS------CCCCCG-G-GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCT
T ss_pred cCCCEEECCCC------ccCCch-h-hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCC
Confidence 57899999975 354443 3 899999999999997 6665544 89999999999999999854 33 89999
Q ss_pred CCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcc
Q 045209 146 QLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLS 225 (478)
Q Consensus 146 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 225 (478)
+|++|++++|.+++ ++ .+..+++|++|+++ +.+.+. + .+..+++|++|++++|.+... ..+..+++|++|+++
T Consensus 135 ~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 135 NLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 207 (466)
T ss_dssp TCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEec
Confidence 99999999999985 34 48999999999997 455533 2 489999999999999999854 358899999999999
Q ss_pred cCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCC
Q 045209 226 FNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDP 305 (478)
Q Consensus 226 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 305 (478)
+|.+.+..+ +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 208 ~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 280 (466)
T 1o6v_A 208 NNQISDITP--LGIL-TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280 (466)
T ss_dssp SSCCCCCGG--GGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC
T ss_pred CCccccccc--cccc-CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc
Confidence 999986544 4444 5999999999999853 467889999999999999986654 88999999999999999988
Q ss_pred CCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccC
Q 045209 306 FPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRT 385 (478)
Q Consensus 306 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 385 (478)
.+...+++|++|++++|+++ .++. +..+++|+.|++++|.+.+..| . .....|++|++++|.+++. ..+..+
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~--~~~~-~~~l~~L~~L~L~~n~l~~~~~-~--~~l~~L~~L~l~~n~l~~~--~~l~~l 352 (466)
T 1o6v_A 281 SPLAGLTALTNLELNENQLE--DISP-ISNLKNLTYLTLYFNNISDISP-V--SSLTKLQRLFFYNNKVSDV--SSLANL 352 (466)
T ss_dssp GGGTTCTTCSEEECCSSCCS--CCGG-GGGCTTCSEEECCSSCCSCCGG-G--GGCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred ccccCCCccCeEEcCCCccc--Cchh-hcCCCCCCEEECcCCcCCCchh-h--ccCccCCEeECCCCccCCc--hhhccC
Confidence 77888999999999999984 4444 7889999999999999987665 2 2334589999999999986 468899
Q ss_pred CCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcc
Q 045209 386 DYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFG 423 (478)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 423 (478)
++|++|++++|++++.++ +..+++|+.|++++|++++
T Consensus 353 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 353 TNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 999999999999998877 8889999999999999977
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4e-34 Score=288.06 Aligned_cols=251 Identities=22% Similarity=0.253 Sum_probs=123.3
Q ss_pred CCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCC-------------CEEEccCCC
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPEL-------------KYIYIENNK 132 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-------------~~L~Ls~n~ 132 (478)
.+++.+++++. .+ |.+|++++++++|++|+++++ .+.|.+|..++++.+| ++|++++|.
T Consensus 11 ~~L~~L~l~~n------~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 11 TFLQEPLRHSS------NL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp ------------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccchhhhcccC------ch-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 35667777663 45 778888888888888888776 6777777777776653 777777776
Q ss_pred CCCCCCcccCCCCCCCEEEeecCcCCCCCchhhc----------------C-CCCCCEEEeecccCCCCCCccCCCCCCC
Q 045209 133 LSGQIPANIGKLTQLEALSFSGNRFTGPIPSSIS----------------Q-LTQLTQLKLGQNFLTGAIPNGISQLKNL 195 (478)
Q Consensus 133 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~----------------~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L 195 (478)
+++ +|.. .++|++|++++|.+++ +|..+. . .++|++|++++|++++ +| .++.+++|
T Consensus 83 l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 83 LSS-LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp CSC-CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred ccc-CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 663 3331 2456666666666654 332210 0 1344555555554443 33 34555555
Q ss_pred CEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccC
Q 045209 196 TYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSW 275 (478)
Q Consensus 196 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 275 (478)
++|++++|.+++ +|.. .++|++|++++|.+++ +| .+..+ ++|++|++++|.+++ +|.. .++|++|++++
T Consensus 156 ~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l-~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNL-PFLTAIYADNNSLKK-LPDL---PLSLESIVAGN 224 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTC-TTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred CEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCC-CCCCEEECCCCcCCc-CCCC---cCcccEEECcC
Confidence 555555555443 2221 1345555555555542 33 23333 255555555555543 2221 13555666666
Q ss_pred CcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcc
Q 045209 276 NQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKM 351 (478)
Q Consensus 276 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 351 (478)
|.++ .+| .+..+++|++|++++|++++... .+++|++|++++|++ ..+|.. .++|++|++++|.+++
T Consensus 225 n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l--~~l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 225 NILE-ELP-ELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYL--TDLPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp SCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCC--SCCCCC---CTTCCEEECCSSCCSE
T ss_pred CcCC-ccc-ccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcc--cccCcc---cCcCCEEECcCCccCc
Confidence 6555 444 36666667777777776665322 235677777777766 235543 2566667777666664
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.7e-33 Score=292.33 Aligned_cols=379 Identities=21% Similarity=0.195 Sum_probs=265.3
Q ss_pred CCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEE
Q 045209 96 KNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLK 175 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 175 (478)
+++++|+|+++ .+.+..+..|.++++|++|+|++|.|++..+.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 47899999998 88887788899999999999999999977778899999999999999999977778899999999999
Q ss_pred eecccCCCCCCccCCCCCCCCEEEccCCCCCCC-CchhhhCCCCCcEEEcccCcCccccchHHHhcc---ccCcEEEccC
Q 045209 176 LGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGA-IPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLA---PQLQYLKLGH 251 (478)
Q Consensus 176 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~---~~L~~L~L~~ 251 (478)
+++|++++..+..|+++++|++|++++|.+... .|..+..+++|++|++++|++++..+..+..+. .....++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999999977777899999999999999999763 678889999999999999999876666554432 1223455555
Q ss_pred ccCCCCCCcccC--------------------------------------------------------------------
Q 045209 252 NVLSGKVPDFLG-------------------------------------------------------------------- 263 (478)
Q Consensus 252 n~l~~~~~~~l~-------------------------------------------------------------------- 263 (478)
|.++...+..+.
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 544321111100
Q ss_pred -------------CCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcC---------------------CCCCCcc
Q 045209 264 -------------KFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL---------------------TDPFPVM 309 (478)
Q Consensus 264 -------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l---------------------~~~~~~~ 309 (478)
...+++.+++.++.+... ..+.....++.|++.+|.+ .......
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 011122222222211110 1122233344444444433 2222333
Q ss_pred CcCCCCEEEccCCCCCC------------------------CCCCccccCCCCccEEEccCCCCcccCCCCccccccCCc
Q 045209 310 NVKGIESLDLSYNQFHL------------------------QQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYD 365 (478)
Q Consensus 310 ~~~~L~~L~l~~n~l~~------------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 365 (478)
.+++|+.+++++|.+.. ..++..+..+++|+.+++..++.....+.........++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 45566666666665521 112233445566666666666665554443333344578
Q ss_pred EEEccCCcccccCccccccCCCCcEEECcCCcCcc--cCCCccCCCCCCEEECCCCcCcccCCccC---CCCCeeeccCC
Q 045209 366 YIDLSENEISGGPVELLNRTDYLVEFRASGSKLKF--NMDSLRIVKTLKVLDLSRNLVFGKLPKAI---SGLDKLNVSFN 440 (478)
Q Consensus 366 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~L~~L~ls~N 440 (478)
.+++++|.+.+..+..+..++.+++|++++|++.. .+..+..+++|++|+|++|+|++..|..| .+|++|+|++|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence 99999999999999999999999999999998643 34678899999999999999999988876 57899999999
Q ss_pred cccccCCCC-----CCCCCcccCCCCCC--------------CCCCCCCCCcCccC
Q 045209 441 NLCGEIPKT-----KFPASAFVGNECLC--------------GPPLPSSSCKCVCG 477 (478)
Q Consensus 441 ~l~~~ip~~-----~~~~~~~~~n~~lc--------------~~~~~~~~~~~~~~ 477 (478)
+|++..|.. .++..++.+|...- .-.+..++..|+|.
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 998655532 22333444442211 11256688899995
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-32 Score=267.85 Aligned_cols=306 Identities=20% Similarity=0.296 Sum_probs=184.8
Q ss_pred cccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCC
Q 045209 92 LVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQL 171 (478)
Q Consensus 92 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 171 (478)
+..+++|++|+++++ .+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred chhcccccEEEEeCC-cccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 345667777777665 3322 33 26667777777777777763 333 6777777777777777764 2 347777777
Q ss_pred CEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccC
Q 045209 172 TQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGH 251 (478)
Q Consensus 172 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~ 251 (478)
++|++++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+. +. +..+ ++|++|++++
T Consensus 113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~-~~~l-~~L~~L~l~~ 186 (347)
T 4fmz_A 113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TP-IANL-TDLYSLSLNY 186 (347)
T ss_dssp SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GG-GGGC-TTCSEEECTT
T ss_pred CEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-hh-hccC-CCCCEEEccC
Confidence 7777777777633 33 6677777777777775544333 366777777777777776632 22 3333 4777777777
Q ss_pred ccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCc
Q 045209 252 NVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPS 331 (478)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 331 (478)
|.+++.. . +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+...+++|++|++++|.++ .+ .
T Consensus 187 n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~--~~-~ 259 (347)
T 4fmz_A 187 NQIEDIS-P-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS--DI-N 259 (347)
T ss_dssp SCCCCCG-G-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--CC-G
T ss_pred Ccccccc-c-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccC--CC-h
Confidence 7776432 2 5667777777777777764433 6667777777777777776555666677777777777763 23 3
Q ss_pred cccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCCCccCCCCC
Q 045209 332 WVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTL 411 (478)
Q Consensus 332 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 411 (478)
.+..+++|++|++++|.+++. +.+ .....|++|++++|.+++..+..+..+++|++|++++|++++.++ +..+++|
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~-~~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 335 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI-SVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKM 335 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC-GGG--GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTC
T ss_pred hHhcCCCcCEEEccCCccCCC-hhh--cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhcc
Confidence 355666666666666655532 211 111224555555555555555555555555555555555554433 4445555
Q ss_pred CEEECCCCcC
Q 045209 412 KVLDLSRNLV 421 (478)
Q Consensus 412 ~~L~Ls~N~l 421 (478)
++|++++|.|
T Consensus 336 ~~L~l~~N~i 345 (347)
T 4fmz_A 336 DSADFANQVI 345 (347)
T ss_dssp SEESSSCC--
T ss_pred ceeehhhhcc
Confidence 5555555544
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-32 Score=266.82 Aligned_cols=305 Identities=24% Similarity=0.357 Sum_probs=256.3
Q ss_pred CCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCC
Q 045209 117 ISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLT 196 (478)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 196 (478)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++. + +.+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 456889999999999987 444 488899999999999999954 44 8999999999999999985 3 4699999999
Q ss_pred EEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCC
Q 045209 197 YLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWN 276 (478)
Q Consensus 197 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 276 (478)
+|++++|.+.+..+ +..+++|++|++++|......+. +..+ ++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNM-TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhC-CCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 99999999985433 88999999999999976544443 5555 599999999999985433 789999999999999
Q ss_pred cCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCC
Q 045209 277 QFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNW 356 (478)
Q Consensus 277 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 356 (478)
.+.+..+ +..+++|+.+++++|.+++..+...+++|++|++++|++ ..++. +..+++|++|++++|.+++. +.+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~ 261 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI--TDLSP-LANLSQLTWLEIGTNQISDI-NAV 261 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCC-GGG
T ss_pred ccccccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc--CCCcc-hhcCCCCCEEECCCCccCCC-hhH
Confidence 9985433 889999999999999999877788899999999999998 44555 88999999999999998853 322
Q ss_pred ccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccC-CCccCCCCCCEEECCCCcCcccCC-ccCCCCCe
Q 045209 357 KPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM-DSLRIVKTLKVLDLSRNLVFGKLP-KAISGLDK 434 (478)
Q Consensus 357 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~L~~ 434 (478)
. ....|++|++++|.+++. ..+..+++|++|++++|++++.. ..+..+++|++|++++|++++..| ..+++|++
T Consensus 262 ~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 337 (347)
T 4fmz_A 262 K--DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS 337 (347)
T ss_dssp T--TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSE
T ss_pred h--cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccce
Confidence 2 223489999999999986 45888999999999999998765 557889999999999999988877 45789999
Q ss_pred eeccCCccc
Q 045209 435 LNVSFNNLC 443 (478)
Q Consensus 435 L~ls~N~l~ 443 (478)
|++++|+++
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 999999985
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.2e-32 Score=272.67 Aligned_cols=340 Identities=22% Similarity=0.301 Sum_probs=244.1
Q ss_pred CCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCC
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLT 145 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~ 145 (478)
.+++.+++++. .+.+ +|. -.++|++|+++++ .+.+ +|+. +++|++|++++|.+++ ++.. .+
T Consensus 71 ~~l~~L~l~~~------~l~~-lp~---~~~~L~~L~l~~n-~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~ 131 (454)
T 1jl5_A 71 RQAHELELNNL------GLSS-LPE---LPPHLESLVASCN-SLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PP 131 (454)
T ss_dssp HTCSEEECTTS------CCSC-CCS---CCTTCSEEECCSS-CCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CT
T ss_pred cCCCEEEecCC------cccc-CCC---CcCCCCEEEccCC-cCCc-cccc---cCCCcEEECCCCccCc-ccCC---CC
Confidence 35788999875 3443 232 1378999999987 6666 6653 4799999999999884 3321 26
Q ss_pred CCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcc
Q 045209 146 QLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLS 225 (478)
Q Consensus 146 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 225 (478)
+|++|++++|.+++ +| .+.++++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .+..+++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 99999999999996 66 59999999999999999985 56543 589999999999986 55 58999999999999
Q ss_pred cCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCC
Q 045209 226 FNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDP 305 (478)
Q Consensus 226 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 305 (478)
+|.+++ +|.. .++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|.. .++|+.|++++|.+++.
T Consensus 204 ~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 204 NNSLKK-LPDL----PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp SSCCSS-CCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC
T ss_pred CCcCCc-CCCC----cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc
Confidence 999984 5542 248999999999998 6664 8899999999999999985 4532 47999999999999884
Q ss_pred CCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccC
Q 045209 306 FPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRT 385 (478)
Q Consensus 306 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 385 (478)
.. .+++|++|++++|.++ .+|.. .++|+.|++++|.+++ ++.. ...|++|++++|++++. |.. +
T Consensus 273 ~~--~~~~L~~L~ls~N~l~--~l~~~---~~~L~~L~l~~N~l~~-i~~~----~~~L~~L~Ls~N~l~~l-p~~---~ 336 (454)
T 1jl5_A 273 PE--LPQSLTFLDVSENIFS--GLSEL---PPNLYYLNASSNEIRS-LCDL----PPSLEELNVSNNKLIEL-PAL---P 336 (454)
T ss_dssp CC--CCTTCCEEECCSSCCS--EESCC---CTTCCEEECCSSCCSE-ECCC----CTTCCEEECCSSCCSCC-CCC---C
T ss_pred Cc--ccCcCCEEECcCCccC--cccCc---CCcCCEEECcCCcCCc-ccCC----cCcCCEEECCCCccccc-ccc---C
Confidence 33 3588999999999984 34432 2689999999999986 3322 12479999999999984 332 5
Q ss_pred CCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcc--cCCccC----------------CCCCeeeccCCcccc--c
Q 045209 386 DYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFG--KLPKAI----------------SGLDKLNVSFNNLCG--E 445 (478)
Q Consensus 386 ~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l----------------~~L~~L~ls~N~l~~--~ 445 (478)
++|++|++++|+++..+. .+++|++|++++|++++ .+|..+ .+|++|++++|++++ .
T Consensus 337 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~ 413 (454)
T 1jl5_A 337 PRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD 413 (454)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------
T ss_pred CcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc
Confidence 889999999999997665 47899999999999988 777665 568899999999998 7
Q ss_pred CCCCCCCCCcccCCCCCC
Q 045209 446 IPKTKFPASAFVGNECLC 463 (478)
Q Consensus 446 ip~~~~~~~~~~~n~~lc 463 (478)
+|.. +....+.++...|
T Consensus 414 iP~s-l~~L~~~~~~~~~ 430 (454)
T 1jl5_A 414 IPES-VEDLRMNSERVVD 430 (454)
T ss_dssp ------------------
T ss_pred chhh-HhheeCcCcccCC
Confidence 8863 4444555554444
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=5.7e-34 Score=275.11 Aligned_cols=270 Identities=21% Similarity=0.248 Sum_probs=176.9
Q ss_pred CCCChhhHHHHHHHHHhCCCCCCCCCCCC----CCCCCCCcccceeeC---------CCCCEEEEEcCCCCCCCCCccee
Q 045209 20 AKCHPDDESGLSGFKSAITQDPSGMLSSW----KPGTDCCTWTGITCL---------SGDRVTSLSLNGQPEKPNSFLSG 86 (478)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~C~---------~~~~v~~l~l~~~~~~~~~~~~~ 86 (478)
++...+|+.||++||.++..++.+...+| ....++|.|.|+.|+ ...+|+.|++++. .+.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n------~l~- 94 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV------PLP- 94 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS------CCS-
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC------Cch-
Confidence 45667899999999999877887777889 456788999999994 2356777777764 233
Q ss_pred ecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhc
Q 045209 87 TISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSIS 166 (478)
Q Consensus 87 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 166 (478)
.+|+.+.++++|++|+++++ .+. .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 55666666777777777665 444 56666666667777777766666 5566666666677777766666656665544
Q ss_pred C---------CCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHH
Q 045209 167 Q---------LTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSI 237 (478)
Q Consensus 167 ~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 237 (478)
. +++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred hccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh
Confidence 3 666666666666666 556666666666666666666663 34456666666666666666665665555
Q ss_pred HhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcC
Q 045209 238 ASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302 (478)
Q Consensus 238 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 302 (478)
..+. +|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+
T Consensus 250 ~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 250 GGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCCC-CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred cCCC-CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 5543 666666666666666666666666666666666666666666666666666666655444
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.5e-32 Score=270.52 Aligned_cols=305 Identities=22% Similarity=0.223 Sum_probs=187.4
Q ss_pred CCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEE
Q 045209 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLD 199 (478)
Q Consensus 120 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 199 (478)
++++++|+++++.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666665533223345566666666666666555445556666666666666666555555555566666666
Q ss_pred ccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCC
Q 045209 200 LQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFS 279 (478)
Q Consensus 200 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 279 (478)
+++|.+....+..|..+++|++|++++|.++ +..+..+..+++|++|++++|.++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-------------------------RIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------BCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccC-------------------------ccChhhccCCCCCCEEECCCCcCC
Confidence 6666555333333455555555555555554 333334444444555555555444
Q ss_pred ccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccc
Q 045209 280 GTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPA 359 (478)
Q Consensus 280 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 359 (478)
+. .+..+++|+.|++++|.+++. ...++|++|++++|.++ .+|.. ..++|+.|++++|.+++. +. . .
T Consensus 179 ~~---~~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~l~~n~l~--~~~~~--~~~~L~~L~l~~n~l~~~-~~-l-~ 245 (390)
T 3o6n_A 179 HV---DLSLIPSLFHANVSYNLLSTL---AIPIAVEELDASHNSIN--VVRGP--VNVELTILKLQHNNLTDT-AW-L-L 245 (390)
T ss_dssp BC---CGGGCTTCSEEECCSSCCSEE---ECCSSCSEEECCSSCCC--EEECC--CCSSCCEEECCSSCCCCC-GG-G-G
T ss_pred cc---ccccccccceeeccccccccc---CCCCcceEEECCCCeee--ecccc--ccccccEEECCCCCCccc-HH-H-c
Confidence 32 133344555555555544431 12234555555555552 22221 234566666666655532 11 1 1
Q ss_pred cccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCcc---CCCCCeee
Q 045209 360 QTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKA---ISGLDKLN 436 (478)
Q Consensus 360 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~L~~L~ 436 (478)
....|++|++++|.+.+..+..+..+++|++|++++|++++.+..+..+++|++|++++|++.+ +|.. +.+|++|+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 324 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEE
Confidence 1223688899999999888889999999999999999999888777889999999999999975 4543 57899999
Q ss_pred ccCCcccccCCCC---CCCCCcccCCCCCCC
Q 045209 437 VSFNNLCGEIPKT---KFPASAFVGNECLCG 464 (478)
Q Consensus 437 ls~N~l~~~ip~~---~~~~~~~~~n~~lc~ 464 (478)
+++|+++ .+|.. .++...+.+|++.|.
T Consensus 325 L~~N~i~-~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 325 LDHNSIV-TLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCSSCCC-CCCCCTTCCCSEEECCSSCEEHH
T ss_pred CCCCccc-eeCchhhccCCEEEcCCCCccch
Confidence 9999997 45654 344557788988873
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.4e-31 Score=268.09 Aligned_cols=322 Identities=20% Similarity=0.189 Sum_probs=260.0
Q ss_pred eeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchh
Q 045209 85 SGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSS 164 (478)
Q Consensus 85 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 164 (478)
.+..+..+.++++|++|+++++ .+.+. | .+..+++|++|++++|.+++. | +..+++|++|++++|.+++. +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNS-SITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSS-CCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred CcccccChhHcCCCCEEEccCC-CcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence 3444567889999999999997 67664 5 588999999999999999864 4 88999999999999999975 3
Q ss_pred hcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccC
Q 045209 165 ISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQL 244 (478)
Q Consensus 165 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L 244 (478)
+..+++|++|++++|++++ ++ ++.+++|++|++++|.+++. + ++.+++|++|++++|...+.++ +..+ ++|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~--~~~l-~~L 172 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD--VTPQ-TQL 172 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC--CTTC-TTC
T ss_pred cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc--cccC-CcC
Confidence 8899999999999999986 44 88999999999999999974 3 7889999999999996655553 4444 599
Q ss_pred cEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCC
Q 045209 245 QYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 324 (478)
Q Consensus 245 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l 324 (478)
++|++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|+.|++++|++++. +...+++|++|++++|++
T Consensus 173 ~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 173 TTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp CEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCC
T ss_pred CEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-CccccCCCCEEEeeCCcC
Confidence 999999999996 44 78899999999999999865 488999999999999999994 577899999999999998
Q ss_pred CCCCCCccccCCCCccEEE----------ccCCCCcccCCCCccccccCCcEEEccCCcccccCcc--------ccccCC
Q 045209 325 HLQQIPSWVTSSPIIFSLK----------LAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVE--------LLNRTD 386 (478)
Q Consensus 325 ~~~~~~~~~~~~~~L~~L~----------l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--------~l~~l~ 386 (478)
+ .+| +..+++|+.|+ +++|.+.+.+|.. ....|+.|++++|...+.+|. .+.+++
T Consensus 246 ~--~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~---~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~ 318 (457)
T 3bz5_A 246 T--ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE---GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP 318 (457)
T ss_dssp S--CCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT---TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred C--CcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccccc---ccccCCEEECCCCcccceeccCCCcceEechhhcc
Confidence 4 334 34455555554 4455444444421 123478899999876665543 255667
Q ss_pred CCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCccCCCCCeeeccCCccccc
Q 045209 387 YLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAISGLDKLNVSFNNLCGE 445 (478)
Q Consensus 387 ~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ls~N~l~~~ 445 (478)
+|++|++++|++++. .+..+++|+.|++++|++++ ++.|..|++++|++.|.
T Consensus 319 ~L~~L~L~~N~l~~l--~l~~l~~L~~L~l~~N~l~~-----l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 319 KLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQD-----FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp TCCEEECTTCCCSCC--CCTTCTTCSEEECCSSCCCB-----CTTGGGSSGGGTSEEEE
T ss_pred cCCEEECCCCccccc--ccccCCcCcEEECCCCCCCC-----ccccccccccCCcEEec
Confidence 889999999999885 37788899999999999976 45777888888988775
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-31 Score=279.68 Aligned_cols=305 Identities=22% Similarity=0.199 Sum_probs=200.1
Q ss_pred CCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEE
Q 045209 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLD 199 (478)
Q Consensus 120 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 199 (478)
+.+++.++++++.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56777777777777644444456677777777777777766666677777777777777777766666666777777777
Q ss_pred ccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCC
Q 045209 200 LQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFS 279 (478)
Q Consensus 200 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 279 (478)
+++|.+.+..+..|..+++|++|++++|.+++..|..+..+ ++|++|++++|.+++.. +..+++|+.|++++|.++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 77777765544555666666666666666664444444444 35666666666555321 334455555555555554
Q ss_pred ccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccc
Q 045209 280 GTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPA 359 (478)
Q Consensus 280 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 359 (478)
+ +...++|+.|++++|.++.... ... ++|+.|++++|.+++. + +..
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~-~~~-------------------------~~L~~L~L~~n~l~~~-~-~l~- 251 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRG-PVN-------------------------VELTILKLQHNNLTDT-A-WLL- 251 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEEC-SCC-------------------------SCCCEEECCSSCCCCC-G-GGG-
T ss_pred c-----ccCCchhheeeccCCccccccc-ccC-------------------------CCCCEEECCCCCCCCC-h-hhc-
Confidence 2 1223345555555554443211 112 3455555555554431 1 111
Q ss_pred cccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCcc---CCCCCeee
Q 045209 360 QTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKA---ISGLDKLN 436 (478)
Q Consensus 360 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~L~~L~ 436 (478)
....|+.|++++|.+.+.+|..|..+++|++|++++|++++.+..+..+++|+.|+|++|+++ .+|.. +++|+.|+
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 112368888888888888888999999999999999999998887888999999999999997 46654 57899999
Q ss_pred ccCCcccccCCCCCC---CCCcccCCCCCCC
Q 045209 437 VSFNNLCGEIPKTKF---PASAFVGNECLCG 464 (478)
Q Consensus 437 ls~N~l~~~ip~~~~---~~~~~~~n~~lc~ 464 (478)
+++|++++ +|...+ ....+.+|++.|.
T Consensus 331 L~~N~l~~-~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 331 LDHNSIVT-LKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCSSCCCC-CCCCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCCC-cChhhcCCCCEEEeeCCCCCCh
Confidence 99999984 455444 4457788988874
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=2.4e-32 Score=262.10 Aligned_cols=248 Identities=30% Similarity=0.431 Sum_probs=158.3
Q ss_pred CCCEEEccCCCCCC--CCCcccCCCCCCCEEEeec-CcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEE
Q 045209 122 ELKYIYIENNKLSG--QIPANIGKLTQLEALSFSG-NRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYL 198 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 198 (478)
++++|+++++.+.+ .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45556666666655 5555666666666666663 55655566666666666666666666665566666666666666
Q ss_pred EccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcC
Q 045209 199 DLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQF 278 (478)
Q Consensus 199 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 278 (478)
++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+.++|++|++++|.+++.+|..+..++ |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 66666666566666666666666666666666666666655544666666666666666666666665 77777777777
Q ss_pred CccchhhhcCCCCCCEEeccCCcCCCCCC-ccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCc
Q 045209 279 SGTLPKSFSNLTKIFNLNLAYNSLTDPFP-VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWK 357 (478)
Q Consensus 279 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 357 (478)
++..|..+..+++|+.|++++|.+++..+ ...+++|++|++++|+++ +.+|.++..+++|++|++++|.+++.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc-CcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 76666677777777777777777765333 235567777777777773 5677777777777777777776666666542
Q ss_pred cccccCCcEEEccCCc
Q 045209 358 PAQTYFYDYIDLSENE 373 (478)
Q Consensus 358 ~~~~~~L~~L~Ls~n~ 373 (478)
. ...|+.+++++|.
T Consensus 289 ~--l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 N--LQRFDVSAYANNK 302 (313)
T ss_dssp T--GGGSCGGGTCSSS
T ss_pred c--ccccChHHhcCCC
Confidence 1 1224555666654
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=7.4e-31 Score=254.12 Aligned_cols=242 Identities=21% Similarity=0.352 Sum_probs=175.5
Q ss_pred CCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEe
Q 045209 97 NLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKL 176 (478)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 176 (478)
+++.++++++ .+. .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-Ccc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5667777665 333 455444 267888888888887666667888888888888888888777778888888888888
Q ss_pred ecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCcc--ccchHHHhccccCcEEEccCccC
Q 045209 177 GQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSG--NIPTSIASLAPQLQYLKLGHNVL 254 (478)
Q Consensus 177 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l 254 (478)
++|.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+... +|++|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCC
Confidence 888877 5555544 788888888888886666677888888888888888752 333333333 778888888887
Q ss_pred CCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCCCCCCCCcc
Q 045209 255 SGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFHLQQIPSW 332 (478)
Q Consensus 255 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~ 332 (478)
++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+ +..+++|++|++++|++ ..+|..
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l--~~lp~~ 259 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL--SRVPAG 259 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC--CBCCTT
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC--eecChh
Confidence 74 454433 678888888888877766777888888888888888776544 44667788888888877 467777
Q ss_pred ccCCCCccEEEccCCCCccc
Q 045209 333 VTSSPIIFSLKLAKCGIKMN 352 (478)
Q Consensus 333 ~~~~~~L~~L~l~~n~l~~~ 352 (478)
+..+++|+.|++++|.+++.
T Consensus 260 l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBC
T ss_pred hhcCccCCEEECCCCCCCcc
Confidence 77777777777777766643
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=5.2e-30 Score=247.95 Aligned_cols=223 Identities=21% Similarity=0.369 Sum_probs=157.9
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEc
Q 045209 121 PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDL 200 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 200 (478)
+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|+++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 46677777777777555556777777777777777777666777777777777777777776 4454443 67777777
Q ss_pred cCCCCCCCCchhhhCCCCCcEEEcccCcCcc--ccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcC
Q 045209 201 QHNQLSGAIPDIFSSLKKLLFLTLSFNKFSG--NIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQF 278 (478)
Q Consensus 201 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 278 (478)
++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+ ++|++|++++|.++. +|..+. ++|++|++++|.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 7777776666677777777777777777742 344445554 477788887777773 444332 6788888888888
Q ss_pred CccchhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCccc
Q 045209 279 SGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMN 352 (478)
Q Consensus 279 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 352 (478)
++..+..+..+++|++|++++|.+++..+ ...+++|++|++++|++ ..+|.++..+++|++|++++|.+++.
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC--SSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC--ccCChhhccCCCcCEEECCCCcCCcc
Confidence 77767778888888888888888776443 44677888888888887 46777777777777777777777643
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.6e-30 Score=246.09 Aligned_cols=285 Identities=16% Similarity=0.156 Sum_probs=161.4
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEcc
Q 045209 122 ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQ 201 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 201 (478)
++++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5777777777766 4555442 566777777777765555566666666666666666665556666666666666666
Q ss_pred CCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCc-
Q 045209 202 HNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSG- 280 (478)
Q Consensus 202 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~- 280 (478)
+|.++ .+|..+. + +|++|++++|.+++..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~-------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 109 KNQLK-ELPEKMP--K-------------------------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp SSCCS-BCCSSCC--T-------------------------TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred CCcCC-ccChhhc--c-------------------------cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc
Confidence 66655 2332221 3 44455555554444444445555555555555555532
Q ss_pred -cchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccc
Q 045209 281 -TLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPA 359 (478)
Q Consensus 281 -~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 359 (478)
..+..+..+++|+.|++++|.++... ....++|++|++++|+++ ...+..+..+++|++|++++|.+++..+.....
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITTIP-QGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCSCC-SSCCTTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred CcChhhccCCCCcCEEECCCCccccCC-ccccccCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 34445556666666666666655422 222356777777777663 334556666666666666666666544433222
Q ss_pred cccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCC-Ccc------CCCCCCEEECCCCcCcc--cCCccC-
Q 045209 360 QTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMD-SLR------IVKTLKVLDLSRNLVFG--KLPKAI- 429 (478)
Q Consensus 360 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~------~l~~L~~L~Ls~N~l~~--~~p~~l- 429 (478)
. ..|++|++++|+++ .+|..+..+++|++|++++|++++.+. .|. ..+.++.|++++|.+.. ..|..|
T Consensus 239 l-~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 239 T-PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp S-TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred C-CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 2 23566777776666 344456666777777777777765542 221 23567777777777643 333443
Q ss_pred --CCCCeeeccCCc
Q 045209 430 --SGLDKLNVSFNN 441 (478)
Q Consensus 430 --~~L~~L~ls~N~ 441 (478)
.+++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 345667777764
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.1e-30 Score=248.23 Aligned_cols=284 Identities=17% Similarity=0.169 Sum_probs=148.5
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEcc
Q 045209 122 ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQ 201 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 201 (478)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5666666666665 4454432 456666666666655445555556666666666665555445555555555555555
Q ss_pred CCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCc-
Q 045209 202 HNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSG- 280 (478)
Q Consensus 202 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~- 280 (478)
+|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++.
T Consensus 111 ~n~l~-------------------------~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 111 KNHLV-------------------------EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp SSCCC-------------------------SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG
T ss_pred CCcCC-------------------------ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC
Confidence 55554 2332221 245555555555544333445555555555555555532
Q ss_pred -cchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccc
Q 045209 281 -TLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPA 359 (478)
Q Consensus 281 -~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 359 (478)
..+..+..+ +|+.|++++|.+++. +....++|++|++++|.++ ...+..+..+++|+.|++++|.+.+..+.....
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTGI-PKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSSC-CSSSCSSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred CCCcccccCC-ccCEEECcCCCCCcc-CccccCCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 334444444 555555555555542 2222355666666666652 333345555566666666666555433322221
Q ss_pred cccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCC-CccC------CCCCCEEECCCCcCc--ccCCccC-
Q 045209 360 QTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMD-SLRI------VKTLKVLDLSRNLVF--GKLPKAI- 429 (478)
Q Consensus 360 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~------l~~L~~L~Ls~N~l~--~~~p~~l- 429 (478)
...|++|++++|+++. +|..+..+++|++|++++|++++.+. .|.. ...|+.|++++|.+. +..|..|
T Consensus 240 -l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 240 -LPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp -CTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred -CCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 1235666666666663 34446666666666666666665442 2221 345677777777665 3444443
Q ss_pred --CCCCeeeccCCc
Q 045209 430 --SGLDKLNVSFNN 441 (478)
Q Consensus 430 --~~L~~L~ls~N~ 441 (478)
.+|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 356666776663
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.7e-33 Score=285.24 Aligned_cols=370 Identities=18% Similarity=0.156 Sum_probs=263.1
Q ss_pred CCEEEEEcCCCCCCCCCcceeecc-cccccCCCCCeeecCCCCCccc----ccCccCCCCCCCCEEEccCCCCCCCCCcc
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTIS-SSLVKVKNLGGIYLQDLGNISG----NFPDFISGLPELKYIYIENNKLSGQIPAN 140 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~ 140 (478)
.+++.|++++. .++.... ..+..+++|++|+++++ .+.+ .++..+..+++|++|++++|.+.+..+..
T Consensus 3 ~~l~~L~Ls~~------~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 75 (461)
T 1z7x_W 3 LDIQSLDIQCE------ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 75 (461)
T ss_dssp EEEEEEEEESC------CCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred ccceehhhhhc------ccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence 46788898874 2433322 33678899999999987 5553 35677788899999999999887543333
Q ss_pred cC-CCC----CCCEEEeecCcCCC----CCchhhcCCCCCCEEEeecccCCCCCCcc-----CCCCCCCCEEEccCCCCC
Q 045209 141 IG-KLT----QLEALSFSGNRFTG----PIPSSISQLTQLTQLKLGQNFLTGAIPNG-----ISQLKNLTYLDLQHNQLS 206 (478)
Q Consensus 141 l~-~l~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----l~~l~~L~~L~l~~n~l~ 206 (478)
+. .++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+.. ....++|++|++++|.++
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 22 344 79999999999884 45777889999999999999886433322 233568999999999988
Q ss_pred CCC----chhhhCCCCCcEEEcccCcCccccchHHHhc----cccCcEEEccCccCCCC----CCcccCCCCCCCEEecc
Q 045209 207 GAI----PDIFSSLKKLLFLTLSFNKFSGNIPTSIASL----APQLQYLKLGHNVLSGK----VPDFLGKFHSLDTLDLS 274 (478)
Q Consensus 207 ~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~ 274 (478)
+.. +..+..+++|++|++++|.+.+..+..+... .++|++|++++|.+++. ++..+..+++|++|+++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 643 5566778999999999999875544444431 24899999999988863 45667778999999999
Q ss_pred CCcCCccc-----hhhhcCCCCCCEEeccCCcCCCCC------CccCcCCCCEEEccCCCCCCCCCCccc-----cCCCC
Q 045209 275 WNQFSGTL-----PKSFSNLTKIFNLNLAYNSLTDPF------PVMNVKGIESLDLSYNQFHLQQIPSWV-----TSSPI 338 (478)
Q Consensus 275 ~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~~ 338 (478)
+|.+++.. +..+..+++|++|++++|.+++.. ....+++|++|++++|.++ ...+..+ ...++
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~-~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG-DEGARLLCETLLEPGCQ 314 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH-HHHHHHHHHHHTSTTCC
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc-hHHHHHHHHHhccCCcc
Confidence 99887543 222335789999999999887621 1224788999999999873 2111111 12368
Q ss_pred ccEEEccCCCCcccC----CCCccccccCCcEEEccCCcccccCcccccc-----CCCCcEEECcCCcCcc-----cCCC
Q 045209 339 IFSLKLAKCGIKMNL----NNWKPAQTYFYDYIDLSENEISGGPVELLNR-----TDYLVEFRASGSKLKF-----NMDS 404 (478)
Q Consensus 339 L~~L~l~~n~l~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~ls~n~l~~-----~~~~ 404 (478)
|++|++++|.+++.. +..... ...|++|++++|.+++..+..+.. .++|++|++++|++++ .+..
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 899999999887542 221111 124789999999888775554543 5689999999998884 3455
Q ss_pred ccCCCCCCEEECCCCcCccc--------CCccCCCCCeeeccCCcccc
Q 045209 405 LRIVKTLKVLDLSRNLVFGK--------LPKAISGLDKLNVSFNNLCG 444 (478)
Q Consensus 405 ~~~l~~L~~L~Ls~N~l~~~--------~p~~l~~L~~L~ls~N~l~~ 444 (478)
+..+++|++|++++|++++. +|.....|+.|++.++.+..
T Consensus 394 l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 67788899999999988654 44445578888887776654
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=8.6e-33 Score=280.01 Aligned_cols=348 Identities=17% Similarity=0.166 Sum_probs=266.7
Q ss_pred CCCCeeecCCCCCccccc-CccCCCCCCCCEEEccCCCCCC----CCCcccCCCCCCCEEEeecCcCCCCCchhh-cCCC
Q 045209 96 KNLGGIYLQDLGNISGNF-PDFISGLPELKYIYIENNKLSG----QIPANIGKLTQLEALSFSGNRFTGPIPSSI-SQLT 169 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~-~~l~ 169 (478)
++|++|+++++ .+.... ...+..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 56789999887 554433 3336788999999999999874 345667888999999999999875434333 3455
Q ss_pred ----CCCEEEeecccCCC----CCCccCCCCCCCCEEEccCCCCCCCCchhhh-----CCCCCcEEEcccCcCcccc---
Q 045209 170 ----QLTQLKLGQNFLTG----AIPNGISQLKNLTYLDLQHNQLSGAIPDIFS-----SLKKLLFLTLSFNKFSGNI--- 233 (478)
Q Consensus 170 ----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~--- 233 (478)
+|++|++++|.++. .++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999884 4578899999999999999998755444333 2568999999999998644
Q ss_pred -chHHHhccccCcEEEccCccCCCCCCcccC-----CCCCCCEEeccCCcCCcc----chhhhcCCCCCCEEeccCCcCC
Q 045209 234 -PTSIASLAPQLQYLKLGHNVLSGKVPDFLG-----KFHSLDTLDLSWNQFSGT----LPKSFSNLTKIFNLNLAYNSLT 303 (478)
Q Consensus 234 -~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 303 (478)
+..+... ++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 162 l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 162 LASVLRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHhhC-CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 3334444 5999999999998754444443 366999999999999864 5777888999999999999987
Q ss_pred CCC-------CccCcCCCCEEEccCCCCCCCC---CCccccCCCCccEEEccCCCCcccCCCCc----cccccCCcEEEc
Q 045209 304 DPF-------PVMNVKGIESLDLSYNQFHLQQ---IPSWVTSSPIIFSLKLAKCGIKMNLNNWK----PAQTYFYDYIDL 369 (478)
Q Consensus 304 ~~~-------~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~L 369 (478)
+.. ....+++|++|++++|.++... ++..+..+++|++|++++|.+.+..+... ......|++|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 531 1124789999999999984211 56677789999999999999874332211 111235899999
Q ss_pred cCCccccc----CccccccCCCCcEEECcCCcCcccC-CC----cc-CCCCCCEEECCCCcCcc----cCCcc---CCCC
Q 045209 370 SENEISGG----PVELLNRTDYLVEFRASGSKLKFNM-DS----LR-IVKTLKVLDLSRNLVFG----KLPKA---ISGL 432 (478)
Q Consensus 370 s~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~-~~----~~-~l~~L~~L~Ls~N~l~~----~~p~~---l~~L 432 (478)
++|.+++. ++..+..+++|++|++++|++++.. .. +. ..++|++|++++|++++ .+|.. +++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 99999986 4556677899999999999998642 22 22 26799999999999986 66655 5789
Q ss_pred CeeeccCCccccc
Q 045209 433 DKLNVSFNNLCGE 445 (478)
Q Consensus 433 ~~L~ls~N~l~~~ 445 (478)
++|++++|++++.
T Consensus 401 ~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 401 RELDLSNNCLGDA 413 (461)
T ss_dssp CEEECCSSSCCHH
T ss_pred cEEECCCCCCCHH
Confidence 9999999999754
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.8e-28 Score=237.13 Aligned_cols=284 Identities=18% Similarity=0.177 Sum_probs=183.6
Q ss_pred CCCCCCCCcccceeeCCCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEE
Q 045209 48 WKPGTDCCTWTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIY 127 (478)
Q Consensus 48 w~~~~~~c~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 127 (478)
|.+....|.|.++ |+.. +. .++ .+|..+. ++|++|+++++ .+.+..+..+.++++|++|+
T Consensus 23 ~~~~~~~C~~~~~-c~~~---------~~------~l~-~iP~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~ 82 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGS---------SG------SLN-SIPSGLT--EAVKSLDLSNN-RITYISNSDLQRCVNLQALV 82 (353)
T ss_dssp ----CCEECTTSE-EECC---------ST------TCS-SCCTTCC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccCCCCCCCeE-eeCC---------CC------Ccc-ccccccc--ccCcEEECCCC-cCcccCHHHhccCCCCCEEE
Confidence 4445567899887 7521 11 111 2333322 46777777776 56655555677777777777
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCC-ccCCCCCCCCEEEccCCC-C
Q 045209 128 IENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIP-NGISQLKNLTYLDLQHNQ-L 205 (478)
Q Consensus 128 Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l 205 (478)
+++|.+++..+..|.++++|++|++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|. +
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence 77777776666667777777777777777775545557777777777777777774333 356777777777777773 5
Q ss_pred CCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhh
Q 045209 206 SGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKS 285 (478)
Q Consensus 206 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 285 (478)
....+..+..+++|++|++++|.+++..|..+..+. +|++|++++|.++......+..+++|++|++++|.+++..+..
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS-EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc-cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 544556677777777777777777766566666653 7777777777776333333445677777777777776544333
Q ss_pred h---cCCCCCCEEeccCCcCCCC----C--CccCcCCCCEEEccCCCCCCCCCCccc-cCCCCccEEEccCCCCcccCC
Q 045209 286 F---SNLTKIFNLNLAYNSLTDP----F--PVMNVKGIESLDLSYNQFHLQQIPSWV-TSSPIIFSLKLAKCGIKMNLN 354 (478)
Q Consensus 286 l---~~l~~L~~L~L~~n~l~~~----~--~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~ 354 (478)
+ .....++.++++++.+.+. . ....+++|++|++++|++ ..+|..+ ..+++|++|++++|.+.+..|
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l--~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL--KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC--CccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 2 2355677777777776641 1 123567788888888877 3566653 677888888888888776544
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.8e-28 Score=237.15 Aligned_cols=278 Identities=22% Similarity=0.241 Sum_probs=147.9
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEc
Q 045209 121 PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDL 200 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 200 (478)
+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 33334455555544 3443332 35555555555555443334555555555555555555444445555555555555
Q ss_pred cCCCCCCCCchhhhCCCCCcEEEcccCcCccccch--HHHhccccCcEEEccCc-cCCCCCCcccCCCCCCCEEeccCCc
Q 045209 201 QHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPT--SIASLAPQLQYLKLGHN-VLSGKVPDFLGKFHSLDTLDLSWNQ 277 (478)
Q Consensus 201 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~ 277 (478)
++|.+++..+..+..+++|++|++++|+++ .+|. .+..+ ++|++|++++| .++...+..+..+++|++|++++|+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccC-CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 555555443444555555555555555554 2332 22223 35555555555 2443334455555556666666665
Q ss_pred CCccchhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCC
Q 045209 278 FSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNN 355 (478)
Q Consensus 278 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 355 (478)
+++..|..+..+++|++|++++|.++.... ...+++|++|++++|.++ +..+..+...
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~------------------- 245 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD-TFHFSELSTG------------------- 245 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT-TCCCC------------------------
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc-cccccccccc-------------------
Confidence 555555555555555555555555543221 112455556666665552 1111111000
Q ss_pred CccccccCCcEEEccCCccccc----CccccccCCCCcEEECcCCcCcccCCC-ccCCCCCCEEECCCCcCcccCC
Q 045209 356 WKPAQTYFYDYIDLSENEISGG----PVELLNRTDYLVEFRASGSKLKFNMDS-LRIVKTLKVLDLSRNLVFGKLP 426 (478)
Q Consensus 356 ~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 426 (478)
.....++.++++++.+.+. +|..+..+++|++|++++|+++..+.. +..+++|++|++++|++.+..|
T Consensus 246 ---~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 246 ---ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ---cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 0001135556666655542 456677888888888888888876654 5778888888888888877554
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2e-26 Score=239.09 Aligned_cols=296 Identities=20% Similarity=0.235 Sum_probs=167.1
Q ss_pred CCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCC
Q 045209 44 MLSSWKPGTDCCTWTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPEL 123 (478)
Q Consensus 44 ~~~~w~~~~~~c~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 123 (478)
....|..+.++|.|+|..|..+. .......+++.|+++++ .+. .+|..+. ++|
T Consensus 11 ~w~~W~~~~~~~~~~~r~~~~~~-----------------------~~~c~~~~l~~L~ls~n-~L~-~lp~~l~--~~L 63 (622)
T 3g06_A 11 VWSAWRRAAPAEESRGRAAVVQK-----------------------MRACLNNGNAVLNVGES-GLT-TLPDCLP--AHI 63 (622)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHH-----------------------HHHHHHHCCCEEECCSS-CCS-CCCSCCC--TTC
T ss_pred HHHHHHhcCCcchhccccccCcc-----------------------cccccCCCCcEEEecCC-CcC-ccChhhC--CCC
Confidence 34568767788999776542100 00111235777777775 444 5555444 677
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCC
Q 045209 124 KYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHN 203 (478)
Q Consensus 124 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 203 (478)
++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|
T Consensus 64 ~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 64 TTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp SEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSS
T ss_pred cEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCC
Confidence 77777777776 4444 45677777777777763 343 55677777777776663 333 4456666666666
Q ss_pred CCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccch
Q 045209 204 QLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLP 283 (478)
Q Consensus 204 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 283 (478)
.++. +|.. +++|++|++++|.++ .+|. ..++|+.|++++|.+++ +| ..+++|+.|++++|.++
T Consensus 132 ~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~---- 194 (622)
T 3g06_A 132 QLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA---- 194 (622)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS----
T ss_pred CCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC----
Confidence 6653 3321 355666666666555 2332 11345555555555542 23 23344555555555544
Q ss_pred hhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccC
Q 045209 284 KSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYF 363 (478)
Q Consensus 284 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 363 (478)
+... .+++|+.|++++|.+ ..+|.. +++|+.|++++|.+++ +|.. ...
T Consensus 195 --------------------~l~~--~~~~L~~L~L~~N~l--~~l~~~---~~~L~~L~Ls~N~L~~-lp~~----l~~ 242 (622)
T 3g06_A 195 --------------------SLPT--LPSELYKLWAYNNRL--TSLPAL---PSGLKELIVSGNRLTS-LPVL----PSE 242 (622)
T ss_dssp --------------------CCCC--CCTTCCEEECCSSCC--SSCCCC---CTTCCEEECCSSCCSC-CCCC----CTT
T ss_pred --------------------CCCC--ccchhhEEECcCCcc--cccCCC---CCCCCEEEccCCccCc-CCCC----CCc
Confidence 3221 124455555555544 233322 2445555555555543 3311 123
Q ss_pred CcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCccCCC
Q 045209 364 YDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAISG 431 (478)
Q Consensus 364 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 431 (478)
|+.|++++|.|++.+. .+++|++|++++|+|+..+..+..+++|+.|+|++|.+++.+|..+..
T Consensus 243 L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 243 LKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 5677777777765433 456777777777777766666777788888888888887777765543
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.9e-27 Score=225.06 Aligned_cols=232 Identities=22% Similarity=0.311 Sum_probs=135.1
Q ss_pred CCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEE
Q 045209 95 VKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQL 174 (478)
Q Consensus 95 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 174 (478)
.++++.|+++++ .+. .+|+.+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 467777777775 444 56666767777777777777777 67777777777777777777777 567677777777777
Q ss_pred EeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccC
Q 045209 175 KLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVL 254 (478)
Q Consensus 175 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 254 (478)
++++|++.+.+|..+.. . ..+..+..+++|++|++++|.++ .+|..+..+. +|++|++++|.+
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~N~l 218 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNSPL 218 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-TCCEEEEESSCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-CCCEEEccCCCC
Confidence 77777766666665543 0 00011223444444444444444 4444444332 455555555554
Q ss_pred CCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCCCCCCCCcc
Q 045209 255 SGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFHLQQIPSW 332 (478)
Q Consensus 255 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~ 332 (478)
++ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..+ ...+++|++|++++|++ .+.+|.+
T Consensus 219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~ 296 (328)
T 4fcg_A 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPSL 296 (328)
T ss_dssp CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCGG
T ss_pred Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccHH
Confidence 42 33344455555555555555555555555555555555555554444333 22455566666666665 3666666
Q ss_pred ccCCCCccEEEccCCCC
Q 045209 333 VTSSPIIFSLKLAKCGI 349 (478)
Q Consensus 333 ~~~~~~L~~L~l~~n~l 349 (478)
+..+++++.+++..+.+
T Consensus 297 l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 297 IAQLPANCIILVPPHLQ 313 (328)
T ss_dssp GGGSCTTCEEECCGGGS
T ss_pred HhhccCceEEeCCHHHH
Confidence 77777777776665544
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.5e-27 Score=225.59 Aligned_cols=230 Identities=23% Similarity=0.228 Sum_probs=101.3
Q ss_pred CCCCCCCEEEccCCCCCCC--CchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCC-cccCCCC
Q 045209 190 SQLKNLTYLDLQHNQLSGA--IPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVP-DFLGKFH 266 (478)
Q Consensus 190 ~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~ 266 (478)
.++++|++|++++|.+... .+..+..+++|++|++++|.+. .+|..+..+ ++|++|++++|.+++..+ ..+..++
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLR 126 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETC-TTCCEEECTTSEEESSTTTTTTTTCT
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCC-CCCCEEECCCCcccccccchhhhhcc
Confidence 3444444444444443311 1233334444444444444443 233333332 244444444444443222 2344455
Q ss_pred CCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCC---CCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEE
Q 045209 267 SLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTD---PFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLK 343 (478)
Q Consensus 267 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 343 (478)
+|++|++++|.+.+..+..+..+++|++|++++|.+++ +..+..+++|++|++++|+++ ...|..+..+++|
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L---- 201 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSL---- 201 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTC----
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCC----
Confidence 55555555555554444445555555555555554443 111223344444444444442 2223333333333
Q ss_pred ccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccC-CCccCC-CCCCEEECCCCcC
Q 045209 344 LAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM-DSLRIV-KTLKVLDLSRNLV 421 (478)
Q Consensus 344 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~l-~~L~~L~Ls~N~l 421 (478)
++|++++|.+++..+..+..+++|++|++++|++++.. ..+..+ ++|++|+|++|++
T Consensus 202 ---------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 202 ---------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ---------------------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ---------------------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 44444444444444444555555555555555555433 234444 2566666666666
Q ss_pred cccCC-----ccCCCCCeeeccCCcccccCC
Q 045209 422 FGKLP-----KAISGLDKLNVSFNNLCGEIP 447 (478)
Q Consensus 422 ~~~~p-----~~l~~L~~L~ls~N~l~~~ip 447 (478)
++..+ ..+...+.+.+..+.+....|
T Consensus 261 ~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 261 ACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp ECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred ecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 54322 222333444444444544444
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.8e-27 Score=227.60 Aligned_cols=227 Identities=23% Similarity=0.286 Sum_probs=195.9
Q ss_pred CCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCC--CCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCE
Q 045209 96 KNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQ--IPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQ 173 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 173 (478)
++|++|+++++ .+....+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 68999999987 66654455678999999999999998732 3566778999999999999998 56777999999999
Q ss_pred EEeecccCCCCCC-ccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCcc-ccchHHHhccccCcEEEccC
Q 045209 174 LKLGQNFLTGAIP-NGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSG-NIPTSIASLAPQLQYLKLGH 251 (478)
Q Consensus 174 L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~L~~ 251 (478)
|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+ ++|++|++++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~ 184 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQ 184 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC-cCCCEEECCC
Confidence 9999999986554 578999999999999999998888889999999999999999986 466666666 4999999999
Q ss_pred ccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCc--cCc-CCCCEEEccCCCCC
Q 045209 252 NVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPV--MNV-KGIESLDLSYNQFH 325 (478)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~-~~L~~L~l~~n~l~ 325 (478)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+. ..+ ++|++|++++|+++
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 999988788899999999999999999987777889999999999999999875543 344 58999999999985
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.3e-28 Score=234.39 Aligned_cols=265 Identities=20% Similarity=0.296 Sum_probs=161.2
Q ss_pred CCCCCCCCCCCcccceeeC-CCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCc-ccccCccCC----
Q 045209 45 LSSWKPGTDCCTWTGITCL-SGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNI-SGNFPDFIS---- 118 (478)
Q Consensus 45 ~~~w~~~~~~c~w~gv~C~-~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~---- 118 (478)
...|.....|+.+..+... ...+++.+++++. .+ .+|..+... |++|+++++ .+ .+.+|..+.
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n------~l--~~p~~~~~~--L~~L~L~~n-~l~~~~~~~~~~~~~~ 89 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVD------TE--ADLGQFTDI--IKSLSLKRL-TVRAARIPSRILFGAL 89 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCC------TT--CCCHHHHHH--HHHCCCCEE-EEEEEECBHHHHHHHH
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccc------cc--ccHHHHHHH--Hhhcccccc-cccCCCcCHHHHHHHH
Confidence 3456544444455443321 1123455555543 34 555555444 777777776 44 445565554
Q ss_pred ---CCCCCCEEEccCCCCCCCCCccc--CCCCCCCEEEeecCcCCCCCchhhcCC-----CCCCEEEeecccCCCCCCcc
Q 045209 119 ---GLPELKYIYIENNKLSGQIPANI--GKLTQLEALSFSGNRFTGPIPSSISQL-----TQLTQLKLGQNFLTGAIPNG 188 (478)
Q Consensus 119 ---~l~~L~~L~Ls~n~~~~~~~~~l--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~ 188 (478)
++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..
T Consensus 90 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 90 RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp HHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred HhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence 67888888888888887777765 7788888888888888766 6666665 78888888888887766677
Q ss_pred CCCCCCCCEEEccCCCCCCC--Cchhh--hCCCCCcEEEcccCcCcc--ccchHHHhccccCcEEEccCccCCCCCC-cc
Q 045209 189 ISQLKNLTYLDLQHNQLSGA--IPDIF--SSLKKLLFLTLSFNKFSG--NIPTSIASLAPQLQYLKLGHNVLSGKVP-DF 261 (478)
Q Consensus 189 l~~l~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~ 261 (478)
++.+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ .++..++...++|++|++++|.+++..| ..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 88888888888888877654 23333 677778888888877762 2222333222467777777777665543 33
Q ss_pred cCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCC
Q 045209 262 LGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 324 (478)
Q Consensus 262 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l 324 (478)
+..+++|++|++++|.++ .+|..+. ++|++|++++|++++......+++|++|++++|++
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTT
T ss_pred hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCC
Confidence 444566666666666665 4444433 45555555555555433333444444444444444
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=6.4e-26 Score=228.85 Aligned_cols=224 Identities=22% Similarity=0.245 Sum_probs=100.0
Q ss_pred CCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEe
Q 045209 97 NLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKL 176 (478)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 176 (478)
++++|+++++ .+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 76 ~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 76 NTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4445555444 444444444455555555555555544444444444555555555555544333333444455555555
Q ss_pred ecccCCCCCCccCCCCCCCCEEEccCC-CCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCC
Q 045209 177 GQNFLTGAIPNGISQLKNLTYLDLQHN-QLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLS 255 (478)
Q Consensus 177 ~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 255 (478)
++|+++...+..+..+++|++|++++| .+....+..|..+++|++|++++|.++ .+|. +..+ ++|++|++++|.++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l-~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPL-VGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC-CTTC-TTCCEEECTTSCCS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc-cccc-ccccEEECcCCcCc
Confidence 555544333334444455555555442 222222223444444455555444444 2221 2222 24444444444444
Q ss_pred CCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCC
Q 045209 256 GKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQF 324 (478)
Q Consensus 256 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l 324 (478)
+..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+ +..+++|++|++++|++
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 4444444444444444444444444444444444444444444444443222 12334444444444443
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.9e-28 Score=233.69 Aligned_cols=248 Identities=18% Similarity=0.155 Sum_probs=125.9
Q ss_pred ccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCC-CCCCcccC-------CCCCCCEEEeecCcCCCCCchh
Q 045209 93 VKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLS-GQIPANIG-------KLTQLEALSFSGNRFTGPIPSS 164 (478)
Q Consensus 93 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~-~~~~~~l~-------~l~~L~~L~L~~n~i~~~~~~~ 164 (478)
...++|+.++++++ .+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++..|..
T Consensus 40 ~~~~~L~~l~l~~n-~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVD-TE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCC-TT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccc-cc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 44555666666654 33 444433322 556666666552 23343333 4556666666666665555554
Q ss_pred h--cCCCCCCEEEeecccCCCCCCccCCCC-----CCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHH
Q 045209 165 I--SQLTQLTQLKLGQNFLTGAIPNGISQL-----KNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSI 237 (478)
Q Consensus 165 ~--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 237 (478)
+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|++.+.++
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 190 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--- 190 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH---
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH---
Confidence 4 5556666666666665544 4444443 556666666666555555555555556666665555543211
Q ss_pred HhccccCcEEEccCccCCCCCCccc--CCCCCCCEEeccCCcCCc--cch-hhhcCCCCCCEEeccCCcCCCCCC---cc
Q 045209 238 ASLAPQLQYLKLGHNVLSGKVPDFL--GKFHSLDTLDLSWNQFSG--TLP-KSFSNLTKIFNLNLAYNSLTDPFP---VM 309 (478)
Q Consensus 238 ~~~~~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~---~~ 309 (478)
.+..+ ..+++|++|++++|++++ .++ ..+..+++|+.|++++|.+++..+ ..
T Consensus 191 --------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 191 --------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp --------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred --------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 11111 344555555555555542 111 223345555555555555554332 12
Q ss_pred CcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccc
Q 045209 310 NVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISG 376 (478)
Q Consensus 310 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 376 (478)
.+++|++|++++|++ ..+|..+. ++|++|++++|++++. |.+.. ...|++|++++|.+++
T Consensus 251 ~l~~L~~L~Ls~N~l--~~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~--l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGL--KQVPKGLP--AKLSVLDLSYNRLDRN-PSPDE--LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCC--SSCCSSCC--SEEEEEECCSSCCCSC-CCTTT--SCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCcc--Chhhhhcc--CCceEEECCCCCCCCC-hhHhh--CCCCCEEeccCCCCCC
Confidence 345566666666655 24555444 5566666666665543 33211 1224666666666654
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.5e-25 Score=229.76 Aligned_cols=259 Identities=23% Similarity=0.267 Sum_probs=185.7
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEcc
Q 045209 122 ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQ 201 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 201 (478)
++++|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|+++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 5788888888887 6666554 678888888888773 444 4577777777777766 3443 45666666666
Q ss_pred CCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCcc
Q 045209 202 HNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGT 281 (478)
Q Consensus 202 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 281 (478)
+|.+++. |. .+++|+.|++++ |.+++ +|.. +++|++|++++|.+++
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~-------------------------N~l~~-lp~~---l~~L~~L~Ls~N~l~~- 155 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFG-------------------------NQLTS-LPVL---PPGLQELSVSDNQLAS- 155 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCS-------------------------SCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred CCcCCCC-CC---CCCCcCEEECCC-------------------------CCCCc-CCCC---CCCCCEEECcCCcCCC-
Confidence 6666532 22 334445555544 44442 2321 2566666666666653
Q ss_pred chhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccc
Q 045209 282 LPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQT 361 (478)
Q Consensus 282 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 361 (478)
+|. ..++|+.|++++|.+++.. ..+++|+.|++++|.+ ..+|.. .++|+.|++++|.++ .+|...
T Consensus 156 l~~---~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l--~~l~~~---~~~L~~L~L~~N~l~-~l~~~~---- 220 (622)
T 3g06_A 156 LPA---LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQL--ASLPTL---PSELYKLWAYNNRLT-SLPALP---- 220 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCC--SCCCCC---CTTCCEEECCSSCCS-SCCCCC----
T ss_pred cCC---ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCC--CCCCCc---cchhhEEECcCCccc-ccCCCC----
Confidence 232 2356777888888777643 5578899999999998 456653 478999999999998 445432
Q ss_pred cCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCccC---CCCCeeecc
Q 045209 362 YFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAI---SGLDKLNVS 438 (478)
Q Consensus 362 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~L~~L~ls 438 (478)
..|+.|++++|.+++.+ ..+++|++|++++|+|+..+. .+++|+.|+|++|+|+ .+|..+ ++|+.|+|+
T Consensus 221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 34899999999999854 456899999999999997666 5789999999999997 677664 678999999
Q ss_pred CCcccccCCC
Q 045209 439 FNNLCGEIPK 448 (478)
Q Consensus 439 ~N~l~~~ip~ 448 (478)
+|++++.+|.
T Consensus 293 ~N~l~~~~~~ 302 (622)
T 3g06_A 293 GNPLSERTLQ 302 (622)
T ss_dssp SCCCCHHHHH
T ss_pred CCCCCCcCHH
Confidence 9999988775
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.7e-26 Score=218.41 Aligned_cols=204 Identities=25% Similarity=0.294 Sum_probs=132.2
Q ss_pred CCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeeccc-CCCCCCccCCCCCCCCEE
Q 045209 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNF-LTGAIPNGISQLKNLTYL 198 (478)
Q Consensus 120 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L 198 (478)
.++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3577777777777776555667777777777777777776666677777777777777776 655556667777777777
Q ss_pred EccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcC
Q 045209 199 DLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQF 278 (478)
Q Consensus 199 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 278 (478)
++++|.+.+..+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC-CCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 777777776666667777777777777777763333333334 3666666666666654444566666666666666666
Q ss_pred CccchhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCC
Q 045209 279 SGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQF 324 (478)
Q Consensus 279 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l 324 (478)
++..|..+..+++|+.|++++|.+++..+ ...+++|++|++++|++
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 65556666666666666666666655332 23445555555555554
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.2e-26 Score=227.67 Aligned_cols=247 Identities=22% Similarity=0.262 Sum_probs=152.4
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEcc
Q 045209 122 ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQ 201 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 201 (478)
..+.++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567888888777 5666553 578888888888887777788888888888888888887777778888888888888
Q ss_pred CCCCCCCCchhhhCCCCCcEEEcccCcCccccch-HHHhccccCcEEEccCcc-CCCCCCcccCCCCCCCEEeccCCcCC
Q 045209 202 HNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPT-SIASLAPQLQYLKLGHNV-LSGKVPDFLGKFHSLDTLDLSWNQFS 279 (478)
Q Consensus 202 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~ 279 (478)
+|.++...+..|..+++|++|++++|.++ .++. .+..+ ++|++|++++|. +....+..+..+++|++|++++|.+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l- 208 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI- 208 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcC-CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-
Confidence 88888666666777778888888777776 3333 23233 356666665532 2222222344445555555555544
Q ss_pred ccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccc
Q 045209 280 GTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPA 359 (478)
Q Consensus 280 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 359 (478)
++......+++|++|++++|+++ +..|..+..+++|+.|++++|.+.+..+.....
T Consensus 209 -----------------------~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 209 -----------------------KDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp -----------------------SSCCCCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred -----------------------cccccccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 44333344455555555555552 333444555555555555555555444333222
Q ss_pred cccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCc
Q 045209 360 QTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLK 399 (478)
Q Consensus 360 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 399 (478)
. ..|++|++++|++++.++..+..+++|++|++++|.+.
T Consensus 265 l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 265 L-ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp C-TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred C-CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 1 12566666666666555555666666666666666554
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=225.72 Aligned_cols=248 Identities=21% Similarity=0.199 Sum_probs=146.3
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEcc
Q 045209 122 ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQ 201 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 201 (478)
..+.++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3557777777776 5666554 577888888888877666777788888888888887776666677777778888887
Q ss_pred CCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCcc-CCCCCCcccCCCCCCCEEeccCCcCCc
Q 045209 202 HNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNV-LSGKVPDFLGKFHSLDTLDLSWNQFSG 280 (478)
Q Consensus 202 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~ 280 (478)
+|.++...+..|..+++|++|++++|.++...+..+..+ ++|++|++++|. +....+..+..+++|++|++++|.++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 777776555667777777777777777663222233333 355555555532 22222223444555555555555444
Q ss_pred cchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCcccc
Q 045209 281 TLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQ 360 (478)
Q Consensus 281 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 360 (478)
.......+++|++|++++|+++ ...|..+..+++|+.|++++|.+++..+......
T Consensus 199 -----------------------~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 199 -----------------------EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp -----------------------SCCCCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred -----------------------cccccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 4333344445555555555542 3334445555555555555555554433322221
Q ss_pred ccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCc
Q 045209 361 TYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLK 399 (478)
Q Consensus 361 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 399 (478)
..|++|++++|++++.++..|..+++|+.|++++|.+.
T Consensus 255 -~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 255 -QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp -TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred -CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 12556666666666555555666666666666666553
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.6e-26 Score=217.23 Aligned_cols=222 Identities=20% Similarity=0.116 Sum_probs=102.4
Q ss_pred CEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccC
Q 045209 148 EALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFN 227 (478)
Q Consensus 148 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 227 (478)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45555555555 333322 345666666666655444445555556666666655555444555555555555555555
Q ss_pred c-CccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCC
Q 045209 228 K-FSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPF 306 (478)
Q Consensus 228 ~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 306 (478)
. +. ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 91 ~~l~-------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 91 AQLR-------------------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp TTCC-------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcc-------------------------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 4 33 222333444444444444444444333444444444444444444444322
Q ss_pred C--ccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCcccccc
Q 045209 307 P--VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNR 384 (478)
Q Consensus 307 ~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 384 (478)
+ +..+++|++|++++|+++ ...+..+..+++|+.|++++|.+.+..|....... .|++|++++|.+++.++..+..
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTT
T ss_pred HhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcc-cccEeeCCCCcCCcCCHHHccc
Confidence 2 223344444444444441 11112233444444444444444333222221111 1445555555555544444555
Q ss_pred CCCCcEEECcCCcCc
Q 045209 385 TDYLVEFRASGSKLK 399 (478)
Q Consensus 385 l~~L~~L~ls~n~l~ 399 (478)
+++|++|++++|.+.
T Consensus 224 l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 224 LRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred CcccCEEeccCCCcc
Confidence 555555555555554
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.7e-25 Score=223.52 Aligned_cols=226 Identities=23% Similarity=0.269 Sum_probs=164.3
Q ss_pred CCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEE
Q 045209 96 KNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLK 175 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 175 (478)
++++.|+++++ .+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 57778888876 67766677778888888888888888766667777888888888888888766566677788888888
Q ss_pred eecccCCCCCCccCCCCCCCCEEEccCCC-CCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccC
Q 045209 176 LGQNFLTGAIPNGISQLKNLTYLDLQHNQ-LSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVL 254 (478)
Q Consensus 176 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 254 (478)
+++|.+....+..+..+++|++|++++|. +....+..|..+++|++|++++|.++ .+|. +..+ ++|++|++++|.+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l-~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPL-IKLDELDLSGNHL 219 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTC-SSCCEEECTTSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCC-cccCEEECCCCcc
Confidence 88888776666677778888888887744 33333446777788888888888776 4543 3334 4777777777777
Q ss_pred CCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCCC
Q 045209 255 SGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFH 325 (478)
Q Consensus 255 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~ 325 (478)
++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+ +..+++|+.|++++|++.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 76667777777777777777777776667777777777777777777776443 235667777777777663
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.7e-25 Score=208.46 Aligned_cols=216 Identities=28% Similarity=0.382 Sum_probs=114.7
Q ss_pred CCCCcccceeeCCCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCC
Q 045209 52 TDCCTWTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENN 131 (478)
Q Consensus 52 ~~~c~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 131 (478)
.+.|.|.|+.|...++++.+++++.. +. .+|..+ . +++++|++++|
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~------l~-~ip~~~-------------------------~--~~l~~L~l~~n 47 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKK------LT-AIPSNI-------------------------P--ADTKKLDLQSN 47 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSC------CS-SCCSCC-------------------------C--TTCSEEECCSS
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCC------CC-ccCCCC-------------------------C--CCCCEEECcCC
Confidence 47899999999755556677777642 22 122221 1 34555555555
Q ss_pred CCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCch
Q 045209 132 KLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPD 211 (478)
Q Consensus 132 ~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 211 (478)
.+++..+..|.++++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 48 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 127 (270)
T 2o6q_A 48 KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127 (270)
T ss_dssp CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH
Confidence 55544444455555555555555555543333445555555555555555544444445555555555555555554444
Q ss_pred hhhCCCCCcEEEcccCcCccccchH-HHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCC
Q 045209 212 IFSSLKKLLFLTLSFNKFSGNIPTS-IASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLT 290 (478)
Q Consensus 212 ~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 290 (478)
.|..+++|++|++++|.+++ ++.. +..+ ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++
T Consensus 128 ~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 205 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYNELQS-LPKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205 (270)
T ss_dssp TTTTCTTCCEEECCSSCCCC-CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HhCcCcCCCEEECCCCcCCc-cCHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcccc
Confidence 55555555555555555542 2222 2222 3555555555555544444455555666666666655544444455555
Q ss_pred CCCEEeccCCcCC
Q 045209 291 KIFNLNLAYNSLT 303 (478)
Q Consensus 291 ~L~~L~L~~n~l~ 303 (478)
+|+.|++++|.+.
T Consensus 206 ~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 206 KLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCBC
T ss_pred CCCEEEecCCCee
Confidence 5555555555543
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6.6e-28 Score=231.74 Aligned_cols=237 Identities=18% Similarity=0.185 Sum_probs=128.6
Q ss_pred CCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEE
Q 045209 143 KLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFL 222 (478)
Q Consensus 143 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 222 (478)
.+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 33445555555555544444445555555555555555443222 445555555555555544221 22556666
Q ss_pred EcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhh-cCCCCCCEEeccCCc
Q 045209 223 TLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSF-SNLTKIFNLNLAYNS 301 (478)
Q Consensus 223 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~ 301 (478)
++++|.+++..+.. .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.
T Consensus 105 ~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 105 HAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp ECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 66666655332221 2366666666666665555566666777777777777766555555 356777777777777
Q ss_pred CCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCccc-ccCcc
Q 045209 302 LTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEIS-GGPVE 380 (478)
Q Consensus 302 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~ 380 (478)
+++......+++|++|++++|++ ..+|..+..+++|+.|++++|.++. +|..... ...|+.|++++|.+. +.++.
T Consensus 181 l~~~~~~~~l~~L~~L~Ls~N~l--~~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~-l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 181 IYDVKGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRF-SQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CCEEECCCCCTTCCEEECCSSCC--CEECGGGGGGTTCSEEECTTSCCCE-ECTTCCC-CTTCCEEECTTCCCBHHHHHH
T ss_pred CcccccccccccCCEEECCCCcC--CcchhhhcccCcccEEECcCCcccc-hhhHhhc-CCCCCEEEccCCCccCcCHHH
Confidence 76654444566777777777776 3455556666666666666665552 2322111 112455555555555 34444
Q ss_pred ccccCCCCcEEECc
Q 045209 381 LLNRTDYLVEFRAS 394 (478)
Q Consensus 381 ~l~~l~~L~~L~ls 394 (478)
.+..++.|+.++++
T Consensus 257 ~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 257 FFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhccccceEEECC
Confidence 44445555555544
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-26 Score=223.27 Aligned_cols=248 Identities=17% Similarity=0.156 Sum_probs=154.6
Q ss_pred ceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCch
Q 045209 84 LSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPS 163 (478)
Q Consensus 84 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 163 (478)
+...+...+..+++|++|+++++ .+.+..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~- 96 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L- 96 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E-
T ss_pred hhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c-
Confidence 33333344455667777777776 6666666667777777777777777764433 66777777777777776632 2
Q ss_pred hhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhcccc
Q 045209 164 SISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQ 243 (478)
Q Consensus 164 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 243 (478)
..++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+....++
T Consensus 97 ---~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 97 ---VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp ---ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ---CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 236777777777777644332 35667777777777776666666677777777777777765555555433347
Q ss_pred CcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC-ccCcCCCCEEEccCC
Q 045209 244 LQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP-VMNVKGIESLDLSYN 322 (478)
Q Consensus 244 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~L~~L~l~~n 322 (478)
|++|++++|.+++. + ....+++|++|++++|.+++ +|..+..+++|+.|++++|.+++... ...+++|++|++++|
T Consensus 171 L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 171 LEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred CCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 77777777777643 2 22346677777777777764 33346666677777777776664222 234556666666666
Q ss_pred CCCCCCCCccccCCCCccEEEcc
Q 045209 323 QFHLQQIPSWVTSSPIIFSLKLA 345 (478)
Q Consensus 323 ~l~~~~~~~~~~~~~~L~~L~l~ 345 (478)
+++...++.++..++.|+.+++.
T Consensus 248 ~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 248 GFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CccCcCHHHHHhccccceEEECC
Confidence 66323455555555555555554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=6.5e-26 Score=230.37 Aligned_cols=238 Identities=17% Similarity=0.159 Sum_probs=180.5
Q ss_pred cCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCE
Q 045209 94 KVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQ 173 (478)
Q Consensus 94 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 173 (478)
.+++|++|+++++ .+.+..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++. + ..++|++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCE
Confidence 4458888888887 7777777788888899999999888876554 78888899999988888743 2 2378888
Q ss_pred EEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCcc
Q 045209 174 LKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNV 253 (478)
Q Consensus 174 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 253 (478)
|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+....++|++|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 88888888865443 457888888888888887777888888888888888888877777766433588888888888
Q ss_pred CCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC-ccCcCCCCEEEccCCCCCCCCCCcc
Q 045209 254 LSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP-VMNVKGIESLDLSYNQFHLQQIPSW 332 (478)
Q Consensus 254 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~ 332 (478)
+++. + ....+++|+.|++++|.+++..| .+..+++|+.|++++|.+++.+. ...+++|+.|++++|++..+.+|.+
T Consensus 181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 181 IYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cccc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 8754 2 23457888888888888885444 57788888888888888876332 3456778888888888743456666
Q ss_pred ccCCCCccEEEcc
Q 045209 333 VTSSPIIFSLKLA 345 (478)
Q Consensus 333 ~~~~~~L~~L~l~ 345 (478)
+..++.++.+++.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 7777777666654
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.4e-26 Score=231.63 Aligned_cols=236 Identities=18% Similarity=0.178 Sum_probs=125.4
Q ss_pred CCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEE
Q 045209 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLD 199 (478)
Q Consensus 120 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 199 (478)
+++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++. + ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 3456666666666665555555666666666666666554333 55555555555555555421 1 114444444
Q ss_pred ccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCC
Q 045209 200 LQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFS 279 (478)
Q Consensus 200 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 279 (478)
+++|.+.+..+. .+ ++|++|++++|.+++..|..++.+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l-------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 106 AANNNISRVSCS---RG-------------------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp CCSSCCCCEEEC---CC-------------------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred CcCCcCCCCCcc---cc-------------------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence 444444432221 12 35555555555555555555555666666666666666
Q ss_pred ccchhhhc-CCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCcc
Q 045209 280 GTLPKSFS-NLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKP 358 (478)
Q Consensus 280 ~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 358 (478)
+..|..+. .+++|+.|++++|.+++..+...+++|++|++++|.+ ..+|..+..+++|+.|++++|.+++ +|....
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~ 234 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVL-IEKALR 234 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCC--CEECGGGGGGTTCSEEECTTSCCCE-ECTTCC
T ss_pred CcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCC--CCCCHhHcCCCCccEEEecCCcCcc-cchhhc
Confidence 55555554 5566666666666666554444566666666666665 2344445555666666666665553 332221
Q ss_pred ccccCCcEEEccCCccc-ccCccccccCCCCcEEECc
Q 045209 359 AQTYFYDYIDLSENEIS-GGPVELLNRTDYLVEFRAS 394 (478)
Q Consensus 359 ~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~ls 394 (478)
.. ..|+.|++++|.+. +.++..+..++.|+.++++
T Consensus 235 ~l-~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 235 FS-QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CC-TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cC-CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 11 12456666666555 3344445555555555543
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=9.6e-28 Score=250.63 Aligned_cols=346 Identities=10% Similarity=0.048 Sum_probs=188.4
Q ss_pred cCCCCCeeecCCCCCcccccCccCCC-CCC-CCEEEccCCC-CCC-CCCcccCCCCCCCEEEeecCcCCCC----Cchhh
Q 045209 94 KVKNLGGIYLQDLGNISGNFPDFISG-LPE-LKYIYIENNK-LSG-QIPANIGKLTQLEALSFSGNRFTGP----IPSSI 165 (478)
Q Consensus 94 ~l~~L~~L~l~~~~~~~~~~~~~l~~-l~~-L~~L~Ls~n~-~~~-~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~ 165 (478)
.+++|++|+++++ .+.+..+..+.. ++. |++|++++|. +.. .++.....+++|++|++++|.+++. ++..+
T Consensus 110 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 5666666666655 444433333332 222 5555555543 110 0111122445555555555554433 22223
Q ss_pred cCCCCCCEEEeecccCCCC----CCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEc-----------------
Q 045209 166 SQLTQLTQLKLGQNFLTGA----IPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTL----------------- 224 (478)
Q Consensus 166 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L----------------- 224 (478)
..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ ++..+..+++|++|++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 3455555555555554411 22223344555555555554442 3344444444444444
Q ss_pred ----------ccCcCccccchHHHhccccCcEEEccCccCCCCCC-cccCCCCCCCEEeccCCcCCccchhhhcCCCCCC
Q 045209 225 ----------SFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVP-DFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIF 293 (478)
Q Consensus 225 ----------~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 293 (478)
+++.. +.+|..+... ++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|+
T Consensus 268 ~~~~L~~L~l~~~~~-~~l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGP-NEMPILFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTCCT-TTGGGGGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCccccch-hHHHHHHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 43322 2344433333 478888888887654333 3356778888888873322223334446677888
Q ss_pred EEeccC-----------CcCCCCCC---ccCcCCCCEEEccCCCCCCCCCCccccC-CCCccEEEcc----CCCCccc--
Q 045209 294 NLNLAY-----------NSLTDPFP---VMNVKGIESLDLSYNQFHLQQIPSWVTS-SPIIFSLKLA----KCGIKMN-- 352 (478)
Q Consensus 294 ~L~L~~-----------n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-- 352 (478)
+|++++ +.+++... ...+++|++|+++.|.++ ...+..+.. +++|+.|+++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT-NESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC-HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc-HHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 888883 44443111 124678888888777774 333333333 7788888886 4455432
Q ss_pred ---CCCCccccccCCcEEEccCC--cccccCccccc-cCCCCcEEECcCCcCccc--CCCccCCCCCCEEECCCCcCccc
Q 045209 353 ---LNNWKPAQTYFYDYIDLSEN--EISGGPVELLN-RTDYLVEFRASGSKLKFN--MDSLRIVKTLKVLDLSRNLVFGK 424 (478)
Q Consensus 353 ---~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~l~-~l~~L~~L~ls~n~l~~~--~~~~~~l~~L~~L~Ls~N~l~~~ 424 (478)
++... .....|++|+++++ .+++..+..+. .+++|++|++++|++++. ...+..+++|++|++++|++++.
T Consensus 425 ~~~~~~~~-~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 425 DNGVRSLL-IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHHHHH-HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHH-HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 11111 11234788888754 36655444443 378888888888888752 23446678888999998887654
Q ss_pred CCc----cCCCCCeeeccCCccccc
Q 045209 425 LPK----AISGLDKLNVSFNNLCGE 445 (478)
Q Consensus 425 ~p~----~l~~L~~L~ls~N~l~~~ 445 (478)
... .+++|++|++++|++++.
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhcCccCeeECcCCcCCHH
Confidence 322 357888889998888754
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=4.5e-27 Score=245.53 Aligned_cols=328 Identities=9% Similarity=0.031 Sum_probs=214.3
Q ss_pred cCCCCCeeecCCCCCcccc----cCccCCCCCCCCEEEccCCCCCC----CCCcccCCCCCCCEEEeecCcCCCCCchhh
Q 045209 94 KVKNLGGIYLQDLGNISGN----FPDFISGLPELKYIYIENNKLSG----QIPANIGKLTQLEALSFSGNRFTGPIPSSI 165 (478)
Q Consensus 94 ~l~~L~~L~l~~~~~~~~~----~~~~l~~l~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 165 (478)
.+++|++|+++++ .+.+. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+
T Consensus 162 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF 239 (592)
T ss_dssp HCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred hCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence 4556666666554 33322 22233445566666666665542 122233455666666666666553 45556
Q ss_pred cCCCCCCEEEeecccCC---CCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccc
Q 045209 166 SQLTQLTQLKLGQNFLT---GAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAP 242 (478)
Q Consensus 166 ~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 242 (478)
..+++|++|+++..... ...+..+..+++|+.++++++.. ..+|..+..+++|++|++++|.+++.....+....+
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 66666666666543221 22334566777888888776533 356777888999999999999987655544444456
Q ss_pred cCcEEEccCccCCCCCCcccCCCCCCCEEeccC-----------CcCCccc-hhhhcCCCCCCEEeccCCcCCCCCCc--
Q 045209 243 QLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSW-----------NQFSGTL-PKSFSNLTKIFNLNLAYNSLTDPFPV-- 308 (478)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~-- 308 (478)
+|++|+++++...+.++.....+++|++|++++ +.+++.. +.....+++|++|+++.|.+++....
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 999999994433323344446789999999993 5666442 23345689999999988888763322
Q ss_pred -cCcCCCCEEEcc----CCCCCCC----CCCccccCCCCccEEEccCCC--CcccCCCCccccccCCcEEEccCCccccc
Q 045209 309 -MNVKGIESLDLS----YNQFHLQ----QIPSWVTSSPIIFSLKLAKCG--IKMNLNNWKPAQTYFYDYIDLSENEISGG 377 (478)
Q Consensus 309 -~~~~~L~~L~l~----~n~l~~~----~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 377 (478)
..+++|++|+++ .|.++.. .++..+..+++|++|++++|. +++............|++|++++|++++.
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 147899999997 5566311 123336678999999998654 54433222222233489999999999874
Q ss_pred -CccccccCCCCcEEECcCCcCccc--CCCccCCCCCCEEECCCCcCccc
Q 045209 378 -PVELLNRTDYLVEFRASGSKLKFN--MDSLRIVKTLKVLDLSRNLVFGK 424 (478)
Q Consensus 378 -~~~~l~~l~~L~~L~ls~n~l~~~--~~~~~~l~~L~~L~Ls~N~l~~~ 424 (478)
++..+..+++|++|++++|.+++. ......+++|++|+|++|++++.
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 455567889999999999998743 23345789999999999999876
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.5e-23 Score=197.20 Aligned_cols=206 Identities=24% Similarity=0.229 Sum_probs=158.8
Q ss_pred CCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEE
Q 045209 96 KNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLK 175 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 175 (478)
++|++|+++++ .+.+..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 46888899887 67776666788889999999999988866666788889999999999988877777888889999999
Q ss_pred eecccCCCCCCccCCCCCCCCEEEccCCCCCCC-CchhhhCCCCCcEEEcccCcCccccchHHHhccccCc----EEEcc
Q 045209 176 LGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGA-IPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQ----YLKLG 250 (478)
Q Consensus 176 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~----~L~L~ 250 (478)
+++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+. +|+ +|+++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-TCTTCCEEEECC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-hccccceeeecC
Confidence 999888876666788888999999998888763 578888888899999988888865555555543 565 77788
Q ss_pred CccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCC
Q 045209 251 HNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTD 304 (478)
Q Consensus 251 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 304 (478)
+|.+++..+..+ ...+|++|++++|++++..+..+..+++|+.|++++|.++.
T Consensus 186 ~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 186 LNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 887775444433 33467778887777775555556677777777777777664
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.4e-23 Score=194.82 Aligned_cols=207 Identities=18% Similarity=0.151 Sum_probs=114.9
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEc
Q 045209 121 PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDL 200 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 200 (478)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45777777777776555556667777777777777776555556666777777777777766555566666667777777
Q ss_pred cCCCCCCCCchhhhCCCCCcEEEcccCcCccc-cchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCC
Q 045209 201 QHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGN-IPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFS 279 (478)
Q Consensus 201 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 279 (478)
++|.+.+..+..+..+++|++|++++|.+++. +|.. +..+++|++|++++|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-------------------------~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-------------------------FSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-------------------------GGGCTTCCEEECCSSCCC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchh-------------------------hccCCCCCEEECCCCCCC
Confidence 66666655444555666666666666655431 3444 444444444444444444
Q ss_pred ccchhhhcCCCCCC----EEeccCCcCCCCCCc-cCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccC
Q 045209 280 GTLPKSFSNLTKIF----NLNLAYNSLTDPFPV-MNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNL 353 (478)
Q Consensus 280 ~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 353 (478)
+..+..+..+++|+ +|++++|.+++..+. ....+|++|++++|+++ ...+..+..+++|+.|++++|.+....
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccC
Confidence 33333333333333 455555555432221 12224555555555552 222223345555555555555555433
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.9e-22 Score=187.81 Aligned_cols=199 Identities=28% Similarity=0.337 Sum_probs=146.4
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEcc
Q 045209 122 ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQ 201 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 201 (478)
..++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 5678888888888 5666554 678999999999887766778888999999999988885555566788888888888
Q ss_pred CCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCcc
Q 045209 202 HNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGT 281 (478)
Q Consensus 202 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 281 (478)
+|.+....+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC-cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 888887666777888888888888888874444444444 4777777777777755555567777777777777777765
Q ss_pred chhhhcCCCCCCEEeccCCcCCCCCC--ccCcCCCCEEEccCCCC
Q 045209 282 LPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQF 324 (478)
Q Consensus 282 ~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l 324 (478)
.+..+..+++|+.|++++|.+++..+ +..+++|+.|++++|++
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 55566777777777777777765433 23456666666666665
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1e-24 Score=211.27 Aligned_cols=265 Identities=15% Similarity=0.190 Sum_probs=164.0
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCCCCCcceeecccccccC--CCCCeeecCCCCCcccccCccCCCCCCCCEEEccC
Q 045209 53 DCCTWTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKV--KNLGGIYLQDLGNISGNFPDFISGLPELKYIYIEN 130 (478)
Q Consensus 53 ~~c~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 130 (478)
.|..|.++.|+ +..++.+++++.. +. +..+..+ ++++.++++++ .+.+..+. +..+++|++|++++
T Consensus 35 vc~~W~~~~~~-~~~~~~l~l~~~~------~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~ 102 (336)
T 2ast_B 35 VCKRWYRLASD-ESLWQTLDLTGKN------LH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSN 102 (336)
T ss_dssp SCHHHHHHHTC-STTSSEEECTTCB------CC---HHHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTT
T ss_pred HHHHHHHHhcC-chhheeecccccc------CC---HHHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccC
Confidence 44579999886 4567888988742 22 3455555 77888888776 55555444 45677888888887
Q ss_pred CCCCCC-CCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecc-cCCCC-CCccCCCCCCCCEEEccCC-CCC
Q 045209 131 NKLSGQ-IPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQN-FLTGA-IPNGISQLKNLTYLDLQHN-QLS 206 (478)
Q Consensus 131 n~~~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~ 206 (478)
|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .++
T Consensus 103 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 777644 5666777777777777777777666666777777777777777 45532 4445666777777777777 666
Q ss_pred CC-CchhhhCCC-CCcEEEcccC--cCc-cccchHHHhccccCcEEEccCcc-CCCCCCcccCCCCCCCEEeccCCc-CC
Q 045209 207 GA-IPDIFSSLK-KLLFLTLSFN--KFS-GNIPTSIASLAPQLQYLKLGHNV-LSGKVPDFLGKFHSLDTLDLSWNQ-FS 279 (478)
Q Consensus 207 ~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~ 279 (478)
+. ++..+..++ +|++|++++| .++ +.++..+... ++|++|++++|. +++..+..+..+++|++|++++|. +.
T Consensus 183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 43 455566677 7777777777 343 2344444444 477777777776 555555566666777777777763 22
Q ss_pred ccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCcc
Q 045209 280 GTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSW 332 (478)
Q Consensus 280 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 332 (478)
......+..+++|+.|++++| ++.........+++.|++++|+++ +..|..
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~-~~~~~~ 312 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFT-TIARPT 312 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSC-CTTCSS
T ss_pred HHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCc-cccCCc
Confidence 222224566666777766666 332111111122444455566553 434443
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=5.3e-23 Score=193.01 Aligned_cols=208 Identities=25% Similarity=0.288 Sum_probs=128.5
Q ss_pred CCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCC
Q 045209 117 ISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLT 196 (478)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 196 (478)
...+++|++|+++++.+. .+ ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 345667777777777665 22 2356677777777777777642 3566677777777777777655555566777777
Q ss_pred EEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCC
Q 045209 197 YLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWN 276 (478)
Q Consensus 197 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 276 (478)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 77777777766555566666777777777776663333323333 36666666666666555555566666777777776
Q ss_pred cCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccC
Q 045209 277 QFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTS 335 (478)
Q Consensus 277 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 335 (478)
.+++..+..+..+++|+.|++++|.+.+. +++|+.++++.|.++ +.+|.+++.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-----~~~l~~l~~~~n~~~-g~ip~~~~~ 244 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-----CPGIRYLSEWINKHS-GVVRNSAGS 244 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC-----TTTTHHHHHHHHHTG-GGBBCTTSC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcccc-----CcHHHHHHHHHHhCC-CcccCcccc
Confidence 66665555566666666666666655432 334555555555553 445554443
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=9.8e-23 Score=194.98 Aligned_cols=226 Identities=19% Similarity=0.215 Sum_probs=162.0
Q ss_pred CCCCCeeecCCCCCcccc-cCc--cCCCCCCCCEEEccCCCCCCCCCccc--CCCCCCCEEEeecCcCCCCCc----hhh
Q 045209 95 VKNLGGIYLQDLGNISGN-FPD--FISGLPELKYIYIENNKLSGQIPANI--GKLTQLEALSFSGNRFTGPIP----SSI 165 (478)
Q Consensus 95 l~~L~~L~l~~~~~~~~~-~~~--~l~~l~~L~~L~Ls~n~~~~~~~~~l--~~l~~L~~L~L~~n~i~~~~~----~~~ 165 (478)
-..++.+.+.+. .+... +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+
T Consensus 63 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 344677777765 33321 111 12234679999999999988888887 888999999999999886544 345
Q ss_pred cCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCC--C--chhhhCCCCCcEEEcccCcCccccchH---HH
Q 045209 166 SQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGA--I--PDIFSSLKKLLFLTLSFNKFSGNIPTS---IA 238 (478)
Q Consensus 166 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~ 238 (478)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. + +..+..+++|++|++++|.++ .++.. +.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH
Confidence 5788999999999999877778888999999999999987642 2 123367888999999999886 33332 32
Q ss_pred hccccCcEEEccCccCCCCCCcccCCC---CCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCC
Q 045209 239 SLAPQLQYLKLGHNVLSGKVPDFLGKF---HSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIE 315 (478)
Q Consensus 239 ~~~~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~ 315 (478)
...++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++......+++|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~ 297 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVD 297 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCcc
Confidence 223588888888888887767666655 58888888888887 5565553 67777777777777644445667777
Q ss_pred EEEccCCCCC
Q 045209 316 SLDLSYNQFH 325 (478)
Q Consensus 316 ~L~l~~n~l~ 325 (478)
+|++++|+++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 7777777763
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.1e-22 Score=187.35 Aligned_cols=202 Identities=25% Similarity=0.260 Sum_probs=106.3
Q ss_pred cccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCC
Q 045209 92 LVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQL 171 (478)
Q Consensus 92 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 171 (478)
+.++++++.++++++ .+. .+|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+++. +. ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~-~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTS-CCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred ccccCCccEEECCCC-CCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 345555666666554 333 2333332 4566666666666555555566666666666666666532 22 1455666
Q ss_pred CEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccC
Q 045209 172 TQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGH 251 (478)
Q Consensus 172 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~ 251 (478)
++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++ +|...+...++|++|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCC
Confidence 66666666655 445555556666666666666655444555555666666666665552 3322222123555555555
Q ss_pred ccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcC
Q 045209 252 NVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302 (478)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 302 (478)
|.++...+..+..+++|++|++++|+++ .+|..+....+|+.+++++|.+
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 5555433334445555555555555555 3444444444555555555444
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=7.2e-22 Score=186.86 Aligned_cols=201 Identities=25% Similarity=0.254 Sum_probs=123.8
Q ss_pred CCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCC
Q 045209 117 ISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLT 196 (478)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 196 (478)
+.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++. +. ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 556778888888888887 5665553 5788888888888776677788888888888888887743 22 25677777
Q ss_pred EEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCC
Q 045209 197 YLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWN 276 (478)
Q Consensus 197 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 276 (478)
+|++++|.+. .+|..+..+++|++|++++|++++..+..+..+ ++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCC-CCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 7777777776 455566666667777777666663333334333 35666666666665444444555556666666666
Q ss_pred cCCccchhhhcCCCCCCEEeccCCcCCCCCC-ccCcCCCCEEEccCCCC
Q 045209 277 QFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP-VMNVKGIESLDLSYNQF 324 (478)
Q Consensus 277 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~L~~L~l~~n~l 324 (478)
++++..+..+..+++|+.|++++|.++.... .....+|+.+++++|++
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 5554433444555555555555555543221 11233455555555544
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.6e-22 Score=188.28 Aligned_cols=203 Identities=28% Similarity=0.341 Sum_probs=125.8
Q ss_pred cccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCC
Q 045209 92 LVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQL 171 (478)
Q Consensus 92 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 171 (478)
..++++|+.|+++++ .+. .+ +.+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~-~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNS-DIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTS-CCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCC-Ccc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 345666666666654 322 12 235566667777777766654 2 356666677777777776665555556666777
Q ss_pred CEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccC
Q 045209 172 TQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGH 251 (478)
Q Consensus 172 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~ 251 (478)
++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+ ++|++|++++
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~ 190 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL-TQLKDLRLYQ 190 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC-ccCCEEECCC
Confidence 777777776665555556666777777777776665555556666677777777776664333333334 3677777777
Q ss_pred ccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCC
Q 045209 252 NVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP 307 (478)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 307 (478)
|.+++..+..+..+++|+.|++++|.+.+. +++|+.+++..|.++|.+|
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBB
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCccc
Confidence 777665555566667777777777765533 3456666666666666444
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=7.9e-24 Score=207.16 Aligned_cols=221 Identities=24% Similarity=0.264 Sum_probs=114.3
Q ss_pred ecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCC----cccCCCC-CCCEEEeecCcCCCCCchhhcCC-----CCC
Q 045209 102 YLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIP----ANIGKLT-QLEALSFSGNRFTGPIPSSISQL-----TQL 171 (478)
Q Consensus 102 ~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~----~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L 171 (478)
.++.+ .+.+.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 4 ~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 33443 4555555555555556666666666654433 4455555 56666666666665545444443 566
Q ss_pred CEEEeecccCCCCCCcc----CCCC-CCCCEEEccCCCCCCCCchhhh----C-CCCCcEEEcccCcCccccchHH----
Q 045209 172 TQLKLGQNFLTGAIPNG----ISQL-KNLTYLDLQHNQLSGAIPDIFS----S-LKKLLFLTLSFNKFSGNIPTSI---- 237 (478)
Q Consensus 172 ~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~l~~~~~~~~---- 237 (478)
++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++.....+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 66666666665444332 2223 5666666666666544443332 2 2466666666666654333222
Q ss_pred HhccccCcEEEccCccCCCCCCccc----CCC-CCCCEEeccCCcCCcc----chhhhcC-CCCCCEEeccCCcCCCCCC
Q 045209 238 ASLAPQLQYLKLGHNVLSGKVPDFL----GKF-HSLDTLDLSWNQFSGT----LPKSFSN-LTKIFNLNLAYNSLTDPFP 307 (478)
Q Consensus 238 ~~~~~~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~~~ 307 (478)
....++|++|++++|.+++..+..+ ... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 2221256666666666654443322 223 3666666666666542 2333333 3366666666666654322
Q ss_pred ------ccCcCCCCEEEccCCC
Q 045209 308 ------VMNVKGIESLDLSYNQ 323 (478)
Q Consensus 308 ------~~~~~~L~~L~l~~n~ 323 (478)
...+++|++|++++|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhcCCCccEEEeccCC
Confidence 1234555666665555
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=2.1e-25 Score=232.99 Aligned_cols=345 Identities=14% Similarity=0.085 Sum_probs=176.8
Q ss_pred cCCCCCeeecCCCCCcccccCccCC-CCCCCCEEEccCC-CCCCC-CCcccCCCCCCCEEEeecCcCCCCCchhhc----
Q 045209 94 KVKNLGGIYLQDLGNISGNFPDFIS-GLPELKYIYIENN-KLSGQ-IPANIGKLTQLEALSFSGNRFTGPIPSSIS---- 166 (478)
Q Consensus 94 ~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n-~~~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~---- 166 (478)
.+++|++|+++++ .+.+..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+.
T Consensus 103 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4555555555554 34443333332 3555555555555 22211 222222455555555555555443332222
Q ss_pred CCCCCCEEEeeccc--CCCC-CCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCc---------------
Q 045209 167 QLTQLTQLKLGQNF--LTGA-IPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNK--------------- 228 (478)
Q Consensus 167 ~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~--------------- 228 (478)
.+++|++|++++|. +... +...+..+++|++|++++|...+.++..+..+++|+.|+++.+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 34455555555554 1100 01111234555555555552222244445555555555543321
Q ss_pred -----------Ccc----ccchHHHhccccCcEEEccCccCCCCCC-cccCCCCCCCEEeccCCcCCcc-chhhhcCCCC
Q 045209 229 -----------FSG----NIPTSIASLAPQLQYLKLGHNVLSGKVP-DFLGKFHSLDTLDLSWNQFSGT-LPKSFSNLTK 291 (478)
Q Consensus 229 -----------l~~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~ 291 (478)
+.. .++..+... ++|++|++++|.+++... ..+..+++|++|++++| +.+. ++.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVC-SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHH-TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccchhhHHHHHHhh-CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 000 111111122 366666666666543221 22445666666666666 3222 2222234666
Q ss_pred CCEEeccC---------CcCCCCCC--c-cCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEcc--C----CCCcccC
Q 045209 292 IFNLNLAY---------NSLTDPFP--V-MNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLA--K----CGIKMNL 353 (478)
Q Consensus 292 L~~L~L~~---------n~l~~~~~--~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~--~----n~l~~~~ 353 (478)
|++|++.+ +.+++... . ..+++|++|.+..|.++...+......+++|+.|+++ + +.++. .
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~ 418 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-E 418 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-C
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-C
Confidence 77776633 23322110 0 1356777777777766421112222357788888887 3 33331 1
Q ss_pred CCC-----ccccccCCcEEEccCCcccccCcccccc-CCCCcEEECcCCcCcccC-CCc-cCCCCCCEEECCCCcCcccC
Q 045209 354 NNW-----KPAQTYFYDYIDLSENEISGGPVELLNR-TDYLVEFRASGSKLKFNM-DSL-RIVKTLKVLDLSRNLVFGKL 425 (478)
Q Consensus 354 ~~~-----~~~~~~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~ls~n~l~~~~-~~~-~~l~~L~~L~Ls~N~l~~~~ 425 (478)
|.. .......|+.|++++ .+++..+..+.. +++|++|++++|.+++.. ..+ ..+++|++|+|++|++++..
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 110 011112478888877 666665555554 788999999999886432 222 56889999999999985543
Q ss_pred C----ccCCCCCeeeccCCccc
Q 045209 426 P----KAISGLDKLNVSFNNLC 443 (478)
Q Consensus 426 p----~~l~~L~~L~ls~N~l~ 443 (478)
+ ..+++|++|++++|+++
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHhCCCCCEEeeeCCCCC
Confidence 3 23578999999999885
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=5.1e-22 Score=182.62 Aligned_cols=196 Identities=18% Similarity=0.220 Sum_probs=136.1
Q ss_pred CCCeeecCCCCCcccccCccCCCCCCCCEEEccCCC-CCCCCCcccCCCCCCCEEEeec-CcCCCCCchhhcCCCCCCEE
Q 045209 97 NLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNK-LSGQIPANIGKLTQLEALSFSG-NRFTGPIPSSISQLTQLTQL 174 (478)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L 174 (478)
+|++|+++++ .+.+..+..+.++++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 6778888876 6666666677888888888888886 7655555777888888888887 88876666677788888888
Q ss_pred EeecccCCCCCCccCCCCCCCC---EEEccCC-CCCCCCchhhhCCCCCc-EEEcccCcCccccchHHHhccccCcEEEc
Q 045209 175 KLGQNFLTGAIPNGISQLKNLT---YLDLQHN-QLSGAIPDIFSSLKKLL-FLTLSFNKFSGNIPTSIASLAPQLQYLKL 249 (478)
Q Consensus 175 ~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 249 (478)
++++|++++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|.++ .+|...+.. ++|++|++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEc
Confidence 888888774 554 77777777 8888888 77766566677777777 7888777776 565554444 36777777
Q ss_pred cCcc-CCCCCCcccCCC-CCCCEEeccCCcCCccchhhhcCCCCCCEEeccCC
Q 045209 250 GHNV-LSGKVPDFLGKF-HSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYN 300 (478)
Q Consensus 250 ~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 300 (478)
++|. +++..+..+..+ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 7773 664444556666 666666666666653 2322 4455566655543
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.3e-23 Score=205.67 Aligned_cols=252 Identities=19% Similarity=0.165 Sum_probs=155.7
Q ss_pred EEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCC----ccCCCCC-CCCEEEccCCCCCCCCchhhhCC-----CC
Q 045209 149 ALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIP----NGISQLK-NLTYLDLQHNQLSGAIPDIFSSL-----KK 218 (478)
Q Consensus 149 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~~ 218 (478)
++.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677888887777766666668888888888876555 5666777 78888888888876666666553 77
Q ss_pred CcEEEcccCcCccccchHHHhcc----ccCcEEEccCccCCCCCCccc----CC-CCCCCEEeccCCcCCccch----hh
Q 045209 219 LLFLTLSFNKFSGNIPTSIASLA----PQLQYLKLGHNVLSGKVPDFL----GK-FHSLDTLDLSWNQFSGTLP----KS 285 (478)
Q Consensus 219 L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~----~~ 285 (478)
|++|++++|.+++..+..+.... ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 88888888887766555544431 377777777777765544333 23 3577777777777764333 33
Q ss_pred hcCCC-CCCEEeccCCcCCCCCCc------cCc-CCCCEEEccCCCCCCCC---CCccccCCCCccEEEccCCCCcccCC
Q 045209 286 FSNLT-KIFNLNLAYNSLTDPFPV------MNV-KGIESLDLSYNQFHLQQ---IPSWVTSSPIIFSLKLAKCGIKMNLN 354 (478)
Q Consensus 286 l~~l~-~L~~L~L~~n~l~~~~~~------~~~-~~L~~L~l~~n~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~ 354 (478)
+...+ +|++|++++|.+++..+. ... ++|++|++++|.++... ++..+...
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~------------------ 223 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI------------------ 223 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS------------------
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC------------------
Confidence 34444 677777777766653321 122 35666666666652100 11111111
Q ss_pred CCccccccCCcEEEccCCcccccCc----cccccCCCCcEEECcCCcCccc--------CCCccCCCCCCEEECCCCcCc
Q 045209 355 NWKPAQTYFYDYIDLSENEISGGPV----ELLNRTDYLVEFRASGSKLKFN--------MDSLRIVKTLKVLDLSRNLVF 422 (478)
Q Consensus 355 ~~~~~~~~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~ls~n~l~~~--------~~~~~~l~~L~~L~Ls~N~l~ 422 (478)
...|++|++++|.+++..+ ..+..+++|++|++++|.+... ...+..+++|+.||+++|++.
T Consensus 224 ------~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 224 ------PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp ------CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred ------CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 1125666666666665443 2334556777777777774322 235566777778888888776
Q ss_pred cc
Q 045209 423 GK 424 (478)
Q Consensus 423 ~~ 424 (478)
+.
T Consensus 298 ~~ 299 (362)
T 3goz_A 298 PS 299 (362)
T ss_dssp GG
T ss_pred Cc
Confidence 55
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=6.1e-22 Score=182.05 Aligned_cols=197 Identities=17% Similarity=0.180 Sum_probs=154.9
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCc-CCCCCchhhcCCCCCCEEEeec-ccCCCCCCccCCCCCCCCEE
Q 045209 121 PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNR-FTGPIPSSISQLTQLTQLKLGQ-NFLTGAIPNGISQLKNLTYL 198 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L 198 (478)
++|++|++++|.+++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 389999999999997666689999999999999997 8866667899999999999998 99987666788899999999
Q ss_pred EccCCCCCCCCchhhhCCCCCc---EEEcccC-cCccccchHHHhccccCc-EEEccCccCCCCCCcccCCCCCCCEEec
Q 045209 199 DLQHNQLSGAIPDIFSSLKKLL---FLTLSFN-KFSGNIPTSIASLAPQLQ-YLKLGHNVLSGKVPDFLGKFHSLDTLDL 273 (478)
Q Consensus 199 ~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L 273 (478)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+ ++|+ +|++++|.++ .+|......++|++|++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l-~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL-CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT-BSSEEEEECCSCCCC-EECTTTTTTCEEEEEEC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccch-hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEc
Confidence 999999986 555 77888887 9999998 8874333344444 4888 8888888887 44433333378888888
Q ss_pred cCCc-CCccchhhhcCC-CCCCEEeccCCcCCCCCCccCcCCCCEEEccCC
Q 045209 274 SWNQ-FSGTLPKSFSNL-TKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYN 322 (478)
Q Consensus 274 ~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n 322 (478)
++|+ +++..+..+..+ ++|+.|++++|++++..+ ..+++|+.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-KGLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC-TTCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCCh-hHhccCceeeccCc
Confidence 8884 876556677777 888888888888876433 36777777777765
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.3e-21 Score=181.32 Aligned_cols=159 Identities=26% Similarity=0.273 Sum_probs=85.1
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEcc
Q 045209 122 ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQ 201 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 201 (478)
.+++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 44555555555554444445555555555555555554444445555555555555555554444445555555555555
Q ss_pred CCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCcc
Q 045209 202 HNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGT 281 (478)
Q Consensus 202 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 281 (478)
+|.+++..+..|..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 555554444445555555555555555553222233333 3566666666666655455566666666666666666543
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=4.6e-25 Score=230.37 Aligned_cols=369 Identities=13% Similarity=0.094 Sum_probs=245.2
Q ss_pred CCEEEEEcCCCCCCCCCcceeecccccc-cCCCCCeeecCCCCCcccc-cCccCCCCCCCCEEEccCCCCCCCCCcc---
Q 045209 66 DRVTSLSLNGQPEKPNSFLSGTISSSLV-KVKNLGGIYLQDLGNISGN-FPDFISGLPELKYIYIENNKLSGQIPAN--- 140 (478)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~--- 140 (478)
.+++.|++++. .+.+..+..+. .+++|++|+++++..+... ++..+.++++|++|++++|.+++..+..
T Consensus 105 ~~L~~L~L~~~------~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRM------VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESC------BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred CCCCeEEeeCc------EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 46888888874 35555555665 6899999999887433332 4444557899999999999877544333
Q ss_pred -cCCCCCCCEEEeecCc--CCC-CCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCC------------
Q 045209 141 -IGKLTQLEALSFSGNR--FTG-PIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQ------------ 204 (478)
Q Consensus 141 -l~~l~~L~~L~L~~n~--i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~------------ 204 (478)
...+++|++|+++++. ++. .++..+..+++|++|++++|...+.++..+..+++|++|++..+.
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 3367899999999887 221 112223457999999999883222355556667777777755432
Q ss_pred --------------CC----CCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCC-CCcccCCC
Q 045209 205 --------------LS----GAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGK-VPDFLGKF 265 (478)
Q Consensus 205 --------------l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l 265 (478)
+. ..++..+..+++|++|++++|.+++.....+....++|++|++++| ++.. ++.....+
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 11 1234444567899999999999875544444444479999999988 4322 22223358
Q ss_pred CCCCEEecc---------CCcCCccchhhhc-CCCCCCEEeccCCcCCCCCCc---cCcCCCCEEEcc--C----CCCCC
Q 045209 266 HSLDTLDLS---------WNQFSGTLPKSFS-NLTKIFNLNLAYNSLTDPFPV---MNVKGIESLDLS--Y----NQFHL 326 (478)
Q Consensus 266 ~~L~~L~L~---------~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~---~~~~~L~~L~l~--~----n~l~~ 326 (478)
++|++|++. .+.+++.....+. .+++|+.|.+..|.+++.... ..+++|++|+++ + +.++.
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 899999994 3455544333443 489999999988888753221 247899999999 3 44421
Q ss_pred C----CCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCcccc-ccCCCCcEEECcCCcCccc
Q 045209 327 Q----QIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELL-NRTDYLVEFRASGSKLKFN 401 (478)
Q Consensus 327 ~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~ 401 (478)
. .++..+..+++|+.|++++ .+++............|++|++++|.+++.....+ ..+++|++|++++|.+++.
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 1 1122356788999999977 55543222222223348999999999987655555 6789999999999999643
Q ss_pred C--CCccCCCCCCEEECCCCcCcccCCc----cCCCCCeeeccCCcc
Q 045209 402 M--DSLRIVKTLKVLDLSRNLVFGKLPK----AISGLDKLNVSFNNL 442 (478)
Q Consensus 402 ~--~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~L~~L~ls~N~l 442 (478)
. .....+++|+.|++++|+++..... .+++|+...+..+.-
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 2 3455689999999999998543322 245555545555443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.8e-22 Score=190.16 Aligned_cols=225 Identities=19% Similarity=0.201 Sum_probs=144.0
Q ss_pred CCCCEEEccCCCCCCCCCc---ccCCCCCCCEEEeecCcCCCCCchhh--cCCCCCCEEEeecccCCCCCC----ccCCC
Q 045209 121 PELKYIYIENNKLSGQIPA---NIGKLTQLEALSFSGNRFTGPIPSSI--SQLTQLTQLKLGQNFLTGAIP----NGISQ 191 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~---~l~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~ 191 (478)
..++.+.+.++.+....-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578888888776521100 12234679999999999888888777 788899999999998886544 34557
Q ss_pred CCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccc--cchHH-HhccccCcEEEccCccCCCCCCc----ccCC
Q 045209 192 LKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGN--IPTSI-ASLAPQLQYLKLGHNVLSGKVPD----FLGK 264 (478)
Q Consensus 192 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~-~~~~~~L~~L~L~~n~l~~~~~~----~l~~ 264 (478)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++... ....++|++|++++|.++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 88889999998888877778888888888888888887542 11111 1122467777777776652 222 2345
Q ss_pred CCCCCEEeccCCcCCccchhhhcCC---CCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccE
Q 045209 265 FHSLDTLDLSWNQFSGTLPKSFSNL---TKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFS 341 (478)
Q Consensus 265 l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 341 (478)
+++|++|++++|++++..|..+..+ ++|++|++++|+++.. +....++|++|++++|+++ .+|. +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~L~~L~Ls~N~l~--~~~~-~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLPAKLRVLDLSSNRLN--RAPQ-PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCCSCCSCEECCSCCCC--SCCC-TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhcCCCCEEECCCCcCC--CCch-hhhCCCccE
Confidence 5667777777776665555555544 4666666666666632 3233356666666666652 2333 344455555
Q ss_pred EEccCCCCc
Q 045209 342 LKLAKCGIK 350 (478)
Q Consensus 342 L~l~~n~l~ 350 (478)
|++++|.++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 555555543
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=6.2e-21 Score=176.69 Aligned_cols=179 Identities=26% Similarity=0.283 Sum_probs=137.2
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEcc
Q 045209 122 ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQ 201 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 201 (478)
..++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567788888777 5666554 588999999999988877788889999999999999987777778888999999999
Q ss_pred CCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCcc
Q 045209 202 HNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGT 281 (478)
Q Consensus 202 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 281 (478)
+|.+++..+..|..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC-CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 998887777778888888888888888873333333344 4778888888877765555677777777777777777766
Q ss_pred chhhhcCCCCCCEEeccCCcCCC
Q 045209 282 LPKSFSNLTKIFNLNLAYNSLTD 304 (478)
Q Consensus 282 ~~~~l~~l~~L~~L~L~~n~l~~ 304 (478)
.+..+..+++|+.|++++|.+..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 66667777777777777777654
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.5e-23 Score=207.02 Aligned_cols=236 Identities=20% Similarity=0.238 Sum_probs=115.8
Q ss_pred CccCCCCCCCCEEEccCCCCCCC----CCcccCCCCCCCEEEeecCcC---CCCCchhh-------cCCCCCCEEEeecc
Q 045209 114 PDFISGLPELKYIYIENNKLSGQ----IPANIGKLTQLEALSFSGNRF---TGPIPSSI-------SQLTQLTQLKLGQN 179 (478)
Q Consensus 114 ~~~l~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~i---~~~~~~~~-------~~l~~L~~L~L~~n 179 (478)
+..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+ ++.+|..+ ..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 33444455555555555554432 122244455555555555432 22233332 45555555555555
Q ss_pred cCCC----CCCccCCCCCCCCEEEccCCCCCCCCchhh----hCC---------CCCcEEEcccCcCc-cccc---hHHH
Q 045209 180 FLTG----AIPNGISQLKNLTYLDLQHNQLSGAIPDIF----SSL---------KKLLFLTLSFNKFS-GNIP---TSIA 238 (478)
Q Consensus 180 ~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~l~-~~~~---~~~~ 238 (478)
.+.+ .++..+..+++|++|++++|.+....+..+ ..+ ++|++|++++|+++ +.++ ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 5554 234445555556666666555543222222 222 56666666666654 2222 1222
Q ss_pred hccccCcEEEccCccCCC-----CCCcccCCCCCCCEEeccCCcCC----ccchhhhcCCCCCCEEeccCCcCCCCC---
Q 045209 239 SLAPQLQYLKLGHNVLSG-----KVPDFLGKFHSLDTLDLSWNQFS----GTLPKSFSNLTKIFNLNLAYNSLTDPF--- 306 (478)
Q Consensus 239 ~~~~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~--- 306 (478)
.. ++|++|++++|.++. ..+..+..+++|++|++++|.++ ..+|..+..+++|+.|++++|.+++..
T Consensus 185 ~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 185 SH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred hC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 33 356666666665542 12224555666666666666664 345555666666666666666665421
Q ss_pred -Cc----cCcCCCCEEEccCCCCCCC----CCCccc-cCCCCccEEEccCCCCcc
Q 045209 307 -PV----MNVKGIESLDLSYNQFHLQ----QIPSWV-TSSPIIFSLKLAKCGIKM 351 (478)
Q Consensus 307 -~~----~~~~~L~~L~l~~n~l~~~----~~~~~~-~~~~~L~~L~l~~n~l~~ 351 (478)
+. ..+++|++|++++|.++ . .+|..+ ..+++|++|++++|.+++
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~-~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIE-LDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCB-HHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHhhccCCCeEEEECcCCcCC-HHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 11 12455666666666552 2 144443 334555555555555543
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.1e-21 Score=183.35 Aligned_cols=191 Identities=25% Similarity=0.409 Sum_probs=108.0
Q ss_pred CCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEE
Q 045209 119 GLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYL 198 (478)
Q Consensus 119 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 198 (478)
.+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ + ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEE
Confidence 35566666666666552 33 355566666666666666543 22 5666666666666666553 2 245666666666
Q ss_pred EccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcC
Q 045209 199 DLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQF 278 (478)
Q Consensus 199 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 278 (478)
++++|.+++. + .+..+++|++|++++|.+++ ++. +..+ ++|++|++++|.+++. +. +..+++|++|++++|.+
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l-~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGL-TNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGC-TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCC-CCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCcc
Confidence 6666666542 2 25566666666666666653 222 3333 3666666666666532 22 55666666666666666
Q ss_pred CccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCC
Q 045209 279 SGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 324 (478)
Q Consensus 279 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l 324 (478)
++..+ +..+++|++|++++|.+++..+...+++|++|++++|++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 53322 555666666666666666555555555666666666655
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1e-22 Score=197.11 Aligned_cols=197 Identities=20% Similarity=0.237 Sum_probs=109.4
Q ss_pred CCeeecCCCCCcccccCccCCCC--CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCC-CchhhcCCCCCCEE
Q 045209 98 LGGIYLQDLGNISGNFPDFISGL--PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGP-IPSSISQLTQLTQL 174 (478)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L 174 (478)
++.++++++ .+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~-~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGK-NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTC-BCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccc-cCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 556666554 222 2333444 5666666666666644433 44566666666666666543 45556666666666
Q ss_pred EeecccCCCCCCccCCCCCCCCEEEccCC-CCCCC-CchhhhCCCCCcEEEcccC-cCccc-cchHHHhccc-cCcEEEc
Q 045209 175 KLGQNFLTGAIPNGISQLKNLTYLDLQHN-QLSGA-IPDIFSSLKKLLFLTLSFN-KFSGN-IPTSIASLAP-QLQYLKL 249 (478)
Q Consensus 175 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~-~L~~L~L 249 (478)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+... + +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV-SETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS-CTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc-ccCCCEEEe
Confidence 66666665555555666666666666666 44432 4444556666666666666 55533 23333333 4 5666666
Q ss_pred cCc--cCC-CCCCcccCCCCCCCEEeccCCc-CCccchhhhcCCCCCCEEeccCC
Q 045209 250 GHN--VLS-GKVPDFLGKFHSLDTLDLSWNQ-FSGTLPKSFSNLTKIFNLNLAYN 300 (478)
Q Consensus 250 ~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n 300 (478)
++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 666 333 2334444455566666666665 44444555555555555555555
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.2e-23 Score=203.82 Aligned_cols=237 Identities=21% Similarity=0.272 Sum_probs=183.5
Q ss_pred ecccccccCCCCCeeecCCCCCcccc----cCccCCCCCCCCEEEccCCC---CCCCCCccc-------CCCCCCCEEEe
Q 045209 87 TISSSLVKVKNLGGIYLQDLGNISGN----FPDFISGLPELKYIYIENNK---LSGQIPANI-------GKLTQLEALSF 152 (478)
Q Consensus 87 ~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~l~~l~~L~~L~Ls~n~---~~~~~~~~l-------~~l~~L~~L~L 152 (478)
.++..+..+++|++|+++++ .+.+. ++..+..+++|++|++++|. +.+.+|..+ ..+++|++|++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 35567788899999999987 66654 34557789999999999864 444555544 78899999999
Q ss_pred ecCcCCC----CCchhhcCCCCCCEEEeecccCCCCCCcc----CCCC---------CCCCEEEccCCCCC-CCCc---h
Q 045209 153 SGNRFTG----PIPSSISQLTQLTQLKLGQNFLTGAIPNG----ISQL---------KNLTYLDLQHNQLS-GAIP---D 211 (478)
Q Consensus 153 ~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~l~~n~l~-~~~~---~ 211 (478)
++|.+++ .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.+. ..++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999986 36777888999999999999986433333 3333 89999999999997 3344 4
Q ss_pred hhhCCCCCcEEEcccCcCccc-----cchHHHhccccCcEEEccCccCC----CCCCcccCCCCCCCEEeccCCcCCcc-
Q 045209 212 IFSSLKKLLFLTLSFNKFSGN-----IPTSIASLAPQLQYLKLGHNVLS----GKVPDFLGKFHSLDTLDLSWNQFSGT- 281 (478)
Q Consensus 212 ~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~- 281 (478)
.+..+++|++|++++|.++.. .+..+... ++|++|++++|.++ ..++..+..+++|++|++++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 677889999999999998732 22244444 59999999999986 46777888899999999999999865
Q ss_pred ---chhhhc--CCCCCCEEeccCCcCCC----CCCc---cCcCCCCEEEccCCCCC
Q 045209 282 ---LPKSFS--NLTKIFNLNLAYNSLTD----PFPV---MNVKGIESLDLSYNQFH 325 (478)
Q Consensus 282 ---~~~~l~--~l~~L~~L~L~~n~l~~----~~~~---~~~~~L~~L~l~~n~l~ 325 (478)
++..+. .+++|+.|++++|.+++ ..+. ..+++|++|++++|+++
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 456663 38999999999999987 2332 24789999999999985
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.6e-20 Score=179.27 Aligned_cols=195 Identities=18% Similarity=0.215 Sum_probs=130.0
Q ss_pred hhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCC
Q 045209 213 FSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKI 292 (478)
Q Consensus 213 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 292 (478)
...+++|++|++++|.++ .++ .+..+ ++|++|++++|.+++.. . +..+++|++|++++|.+++. + .+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l-~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYL-NNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV-S-AIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGC-TTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhcc-CCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc-h-hhcCCCCC
Confidence 345667788888877776 344 34444 47788888888777433 3 77777888888888877643 3 57777778
Q ss_pred CEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCC
Q 045209 293 FNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSEN 372 (478)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n 372 (478)
+.|++++|.+++..+...+++|++|++++|.+ ..++. +..+++|+.|++++|.+++..+ . .....|+.|++++|
T Consensus 110 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l--~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l--~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI--TNISP-LAGLTNLQYLSIGNAQVSDLTP-L--ANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG-GGGCTTCCEEECCSSCCCCCGG-G--TTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCchhhcCCCCCCEEECCCCcc--CcCcc-ccCCCCccEEEccCCcCCCChh-h--cCCCCCCEEECCCC
Confidence 88888888777766666777777788877776 33443 6667777777777777664322 1 12223577777777
Q ss_pred cccccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcc
Q 045209 373 EISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFG 423 (478)
Q Consensus 373 ~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 423 (478)
.+++..+ +..+++|++|++++|++++.++ +..+++|+.|++++|++++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 7766543 5666777777777777765553 5666777777777777644
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.5e-20 Score=168.81 Aligned_cols=163 Identities=26% Similarity=0.294 Sum_probs=116.8
Q ss_pred CCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEE
Q 045209 96 KNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLK 175 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 175 (478)
++|++|+++++ .+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 47788888876 66665566677788888888888887755555567778888888888888766555677778888888
Q ss_pred eecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCC
Q 045209 176 LGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLS 255 (478)
Q Consensus 176 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 255 (478)
+++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.. +.|+.|+++.|.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~--------~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC--------PGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT--------TTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC--------CCHHHHHHHHHhCC
Confidence 8888777655556777778888888888777666666777777777777777665432 35666677777777
Q ss_pred CCCCcccCCCCC
Q 045209 256 GKVPDFLGKFHS 267 (478)
Q Consensus 256 ~~~~~~l~~l~~ 267 (478)
|.+|..++.++.
T Consensus 179 g~ip~~~~~l~~ 190 (208)
T 2o6s_A 179 GVVRNSAGSVAP 190 (208)
T ss_dssp TTBBCTTSSBCT
T ss_pred ceeeccCccccC
Confidence 777766655443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.8e-20 Score=182.34 Aligned_cols=181 Identities=19% Similarity=0.135 Sum_probs=87.5
Q ss_pred CCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCC-cccCCCCCCCE-EEeecCcCCCCCchhhcCCCCCCE
Q 045209 96 KNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIP-ANIGKLTQLEA-LSFSGNRFTGPIPSSISQLTQLTQ 173 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~-L~L~~n~i~~~~~~~~~~l~~L~~ 173 (478)
+++++|+|+++ .+....+..|.++++|++|+|++|.+.+.+| ..|.+++++++ +.++.|+++...|..|..+++|++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 45566666654 4444333455666666666666666544333 24555555543 344455555555555566666666
Q ss_pred EEeecccCCCCCCccCCCCCCCCEEEccC-CCCCCCCchhhhCCC-CCcEEEcccCcCccccchHHHhccccCcEEEccC
Q 045209 174 LKLGQNFLTGAIPNGISQLKNLTYLDLQH-NQLSGAIPDIFSSLK-KLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGH 251 (478)
Q Consensus 174 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~ 251 (478)
|++++|++....+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++ .++...+... +|+++++.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~-~L~~l~l~~ 186 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT-QLDELNLSD 186 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTE-EEEEEECTT
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcccc-chhHHhhcc
Confidence 66666665544333444444555555543 233322233333332 3445555555554 3433333332 444554443
Q ss_pred -ccCCCCCCcccCCCCCCCEEeccCCcCC
Q 045209 252 -NVLSGKVPDFLGKFHSLDTLDLSWNQFS 279 (478)
Q Consensus 252 -n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 279 (478)
|.++...++.|..+++|++|++++|+++
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 3333222233444444444444444444
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.4e-19 Score=176.07 Aligned_cols=228 Identities=17% Similarity=0.128 Sum_probs=172.8
Q ss_pred cCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCc-hhhcCCCCCCE-EEeecccCCCCCCccCC
Q 045209 113 FPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP-SSISQLTQLTQ-LKLGQNFLTGAIPNGIS 190 (478)
Q Consensus 113 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~-L~L~~n~l~~~~~~~l~ 190 (478)
+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.+..|+++...|..|.
T Consensus 24 iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 24 IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 44434 2579999999999985555678999999999999999876554 45788888876 56667889877788899
Q ss_pred CCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEccc-CcCccccch-HHHhccccCcEEEccCccCCCCCCcccCCCCCC
Q 045209 191 QLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSF-NKFSGNIPT-SIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSL 268 (478)
Q Consensus 191 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 268 (478)
.+++|++|++++|.+....+..+....++..+++.+ +.+. .++. .+......++.|++++|.++. ++.......+|
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L 179 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQL 179 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccccC-CChhhccccch
Confidence 999999999999999877666666777888898866 4565 4443 344444468899999999984 44444456789
Q ss_pred CEEeccC-CcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCC
Q 045209 269 DTLDLSW-NQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKC 347 (478)
Q Consensus 269 ~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 347 (478)
+++++.+ |.++...+..|..+++|+.|++++|+++..+ ...+.+|+.|.+.++.- ...+|. +..+++|+.+++.++
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp-~~~~~~L~~L~~l~~~~-l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-SYGLENLKKLRARSTYN-LKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-SSSCTTCCEEECTTCTT-CCCCCC-TTTCCSCCEEECSCH
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-hhhhccchHhhhccCCC-cCcCCC-chhCcChhhCcCCCC
Confidence 9999975 5666444456889999999999999998743 45578888888777654 366774 677888888887643
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=2e-20 Score=191.77 Aligned_cols=207 Identities=22% Similarity=0.343 Sum_probs=153.1
Q ss_pred CCCCCCCCCC-----cccce-eeCCCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCC
Q 045209 46 SSWKPGTDCC-----TWTGI-TCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISG 119 (478)
Q Consensus 46 ~~w~~~~~~c-----~w~gv-~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 119 (478)
.+|..+.++| .|.++ .|. .++++.|+++++ .+.+ +|..+ +++|++|+++++ .+. .+| ..
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n------~L~~-lp~~l--~~~L~~L~Ls~N-~l~-~ip---~~ 98 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRL------NLSS-LPDNL--PPQITVLEITQN-ALI-SLP---EL 98 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSS------CCSC-CCSCC--CTTCSEEECCSS-CCS-CCC---CC
T ss_pred HHHhccCCccccccchhhhccccc-cCCccEEEeCCC------CCCc-cCHhH--cCCCCEEECcCC-CCc-ccc---cc
Confidence 3576566778 69999 674 357999999875 3555 66555 378888888887 555 566 45
Q ss_pred CCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEE
Q 045209 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLD 199 (478)
Q Consensus 120 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 199 (478)
+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLS 166 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence 7888888888888885 666 554 88888888888886 555 57888888888888875 554 567888888
Q ss_pred ccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccC-------cEEEccCccCCCCCCcccCCCCCCCEEe
Q 045209 200 LQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQL-------QYLKLGHNVLSGKVPDFLGKFHSLDTLD 272 (478)
Q Consensus 200 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 272 (478)
+++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+
T Consensus 167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236 (571)
T ss_dssp CCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEE
T ss_pred CCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEE
Confidence 88888876 555 54 78888888888887 6665 322 55 88888888887 5677677788888888
Q ss_pred ccCCcCCccchhhhcCC
Q 045209 273 LSWNQFSGTLPKSFSNL 289 (478)
Q Consensus 273 L~~n~l~~~~~~~l~~l 289 (478)
+++|.+++.+|..+..+
T Consensus 237 L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 237 LEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCSSSCCHHHHHHHHHH
T ss_pred eeCCcCCCcCHHHHHHh
Confidence 88888887777776554
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.4e-19 Score=183.88 Aligned_cols=186 Identities=20% Similarity=0.273 Sum_probs=101.6
Q ss_pred CCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEec
Q 045209 218 KLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNL 297 (478)
Q Consensus 218 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 297 (478)
+++.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 45555555555442 433221 24555555555554 333 234555555555555553 343 332 5555555
Q ss_pred cCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCccccc
Q 045209 298 AYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGG 377 (478)
Q Consensus 298 ~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 377 (478)
++|.+++... .+++|+.|++++|.++ .+|. .+++|+.|++++|.+++ +|. .. ..|+.|++++|+|+..
T Consensus 128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~---~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE--LPALLEYINADNNQLT--MLPE---LPTSLEVLSVRNNQLTF-LPE-LP---ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSC-CCC-CC---TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC--cCccccEEeCCCCccC--cCCC---cCCCcCEEECCCCCCCC-cch-hh---CCCCEEECcCCCCCch
Confidence 5555555222 4555566666665552 2444 34556666666666554 444 11 2356666666666643
Q ss_pred CccccccCCCC-------cEEECcCCcCcccCCCccCCCCCCEEECCCCcCcccCCccCCC
Q 045209 378 PVELLNRTDYL-------VEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAISG 431 (478)
Q Consensus 378 ~~~~l~~l~~L-------~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 431 (478)
+. +.. +| +.|++++|+|+..+..+..+++|+.|+|++|++++.+|..+..
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 32 332 45 7777887777776666666778888888888887777766543
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=6.7e-19 Score=160.47 Aligned_cols=165 Identities=28% Similarity=0.370 Sum_probs=134.4
Q ss_pred CCCCCCCCCcccceeeCCCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEE
Q 045209 47 SWKPGTDCCTWTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYI 126 (478)
Q Consensus 47 ~w~~~~~~c~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 126 (478)
.|..+...|.|++|.|... ++ +.+|..+ .++|++|+++++ .+.+..|..+..+++|++|
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~-~l-----------------~~ip~~~--~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 69 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK-RH-----------------ASVPAGI--PTNAQILYLHDN-QITKLEPGVFDSLINLKEL 69 (229)
T ss_dssp CCCCTTCEEETTEEECTTS-CC-----------------SSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCCCEEeCCEeEccCC-Cc-----------------CccCCCC--CCCCCEEEcCCC-ccCccCHHHhhCccCCcEE
Confidence 4555778899999999632 11 1223322 278999999987 7888888889999999999
Q ss_pred EccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCC
Q 045209 127 YIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLS 206 (478)
Q Consensus 127 ~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 206 (478)
++++|.+....+..|..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+.
T Consensus 70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred ECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 99999998655566788999999999999999777777888999999999999988 77888889999999999999998
Q ss_pred CCCchhhhCCCCCcEEEcccCcCcccc
Q 045209 207 GAIPDIFSSLKKLLFLTLSFNKFSGNI 233 (478)
Q Consensus 207 ~~~~~~l~~l~~L~~L~L~~n~l~~~~ 233 (478)
+..+..+..+++|+.|++++|.+....
T Consensus 149 ~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 149 SIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 777777888999999999999887554
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=6.5e-19 Score=158.15 Aligned_cols=164 Identities=26% Similarity=0.287 Sum_probs=134.9
Q ss_pred CCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEE
Q 045209 120 LPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLD 199 (478)
Q Consensus 120 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 199 (478)
.++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35899999999999866666788999999999999999977666788899999999999999866666688999999999
Q ss_pred ccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCC
Q 045209 200 LQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFS 279 (478)
Q Consensus 200 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 279 (478)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+.+ .+++|+.|+++.|+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-TSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC-CCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 99999987777778889999999999999884433334444 589999999987663 4567888889999998
Q ss_pred ccchhhhcCCCC
Q 045209 280 GTLPKSFSNLTK 291 (478)
Q Consensus 280 ~~~~~~l~~l~~ 291 (478)
|.+|..++.++.
T Consensus 179 g~ip~~~~~l~~ 190 (208)
T 2o6s_A 179 GVVRNSAGSVAP 190 (208)
T ss_dssp TTBBCTTSSBCT
T ss_pred ceeeccCccccC
Confidence 888887776654
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=7.9e-20 Score=193.97 Aligned_cols=263 Identities=19% Similarity=0.182 Sum_probs=139.5
Q ss_pred ChhhHHHHHHHHHhCCCCCCCCCCCCCC-CCCCCcccceeeCCCCCEEEEEcCCCCCCCCCcceeecccccccCCCCCee
Q 045209 23 HPDDESGLSGFKSAITQDPSGMLSSWKP-GTDCCTWTGITCLSGDRVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGI 101 (478)
Q Consensus 23 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 101 (478)
...++.+++++..+.....+..-..|.. .+..+.|.++.+.. .+++++++.+.. +.. .+..+.....|+.+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n~------~~~-~~~~~l~~l~Ls~~ 201 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-PLTPKIELFANG------KDE-ANQALLQHKKLSQY 201 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-CccceEEeeCCC------CCc-chhhHhhcCccCcc
Confidence 3456778888887764443343445643 34456899888854 679999997642 332 34444444455555
Q ss_pred ecCCCC---CcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeec
Q 045209 102 YLQDLG---NISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQ 178 (478)
Q Consensus 102 ~l~~~~---~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 178 (478)
.+.... ......++.+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++
T Consensus 202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred cccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence 443321 111245777899999999999999998 78888889999999999999999 7889999999999999999
Q ss_pred ccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCC
Q 045209 179 NFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKV 258 (478)
Q Consensus 179 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 258 (478)
|.++ .+|..+..+++|++|+|++|.+. .+|..|+.+++|++|+|++|.+++.+|..+.........+++++|.+++.+
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 9999 78999999999999999999997 678889999999999999999998888877665334455789999999877
Q ss_pred CcccCCCCCCCEEeccCC--------cCCccchhhhcCCCCCCEEeccCCcCC
Q 045209 259 PDFLGKFHSLDTLDLSWN--------QFSGTLPKSFSNLTKIFNLNLAYNSLT 303 (478)
Q Consensus 259 ~~~l~~l~~L~~L~L~~n--------~l~~~~~~~l~~l~~L~~L~L~~n~l~ 303 (478)
|.. |+.|+++.| .+.+..+..+..+..+....+++|.+.
T Consensus 358 p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 358 PHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCC-----------------------------------------------CCC
T ss_pred ccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 754 455666665 233333334455566666677777664
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=5.8e-18 Score=160.11 Aligned_cols=172 Identities=29% Similarity=0.398 Sum_probs=109.8
Q ss_pred CCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCE
Q 045209 118 SGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTY 197 (478)
Q Consensus 118 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 197 (478)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ + ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 356677777777777663 33 36667777777777777775433 6777777777777777764 2 33677777777
Q ss_pred EEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCc
Q 045209 198 LDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQ 277 (478)
Q Consensus 198 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 277 (478)
|++++|.+.+. ..+..+++|+.|++++|.+++ + ..+..+ ++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l-~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhccC-CCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 77777777643 346666777777777777663 2 334444 366666666666664333 5666666667776666
Q ss_pred CCccchhhhcCCCCCCEEeccCCcCCC
Q 045209 278 FSGTLPKSFSNLTKIFNLNLAYNSLTD 304 (478)
Q Consensus 278 l~~~~~~~l~~l~~L~~L~L~~n~l~~ 304 (478)
+++ ++ .+..+++|+.|++++|+++.
T Consensus 190 i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 663 23 36666666666666666654
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=9.2e-18 Score=158.72 Aligned_cols=184 Identities=29% Similarity=0.433 Sum_probs=131.2
Q ss_pred EEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCC
Q 045209 126 IYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQL 205 (478)
Q Consensus 126 L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 205 (478)
+.+..+.+.+.. .+..+++|++|++++|.++.. + .+..+++|++|++++|++++. +. +..+++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcC
Confidence 344455554322 234678889999999988754 3 477888999999999988854 33 88888899999988888
Q ss_pred CCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhh
Q 045209 206 SGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKS 285 (478)
Q Consensus 206 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 285 (478)
.+ + ..+..+++|++|++++|.+++ + ..+..+ ++|++|++++|.+++. ..+..+++|++|++++|++++..+
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCC-CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence 75 3 347788888888888888874 3 334444 4788888888877753 456777777777777777775443
Q ss_pred hcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCC
Q 045209 286 FSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 324 (478)
Q Consensus 286 l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l 324 (478)
+..+++|+.|++++|.+++......+++|+.|++++|++
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 677777777777777777655555666777777777766
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=9.6e-18 Score=151.79 Aligned_cols=150 Identities=22% Similarity=0.330 Sum_probs=63.9
Q ss_pred EEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCC
Q 045209 125 YIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQ 204 (478)
Q Consensus 125 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 204 (478)
.++.+++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3444444444 3333322 344555555555444333344444445555555544444444444444444444444444
Q ss_pred CCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcC
Q 045209 205 LSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQF 278 (478)
Q Consensus 205 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 278 (478)
++...+..|..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC-CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 443333334444444444444444442222222222 2334444444433333333333444444444444443
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=5.2e-18 Score=165.59 Aligned_cols=176 Identities=23% Similarity=0.223 Sum_probs=109.4
Q ss_pred CeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccC-CCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEee
Q 045209 99 GGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIG-KLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLG 177 (478)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 177 (478)
+.++++++ .+. .+|..+. +.+++|+|++|.+++..+..+. ++++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~-~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 35666554 333 2444332 3467777777777755555565 67777777777777776666667777777777777
Q ss_pred cccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHH---hccccCcEEEccCccC
Q 045209 178 QNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIA---SLAPQLQYLKLGHNVL 254 (478)
Q Consensus 178 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~l 254 (478)
+|+++...+..|..+++|++|++++|.+....+..|..+++|+.|+|++|.++ .+|..++ ...++|++|+|++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCC
Confidence 77777555556777777777777777777666667777777777777777776 3444432 1123666666666666
Q ss_pred CCCCCcccCCCCC--CCEEeccCCcCC
Q 045209 255 SGKVPDFLGKFHS--LDTLDLSWNQFS 279 (478)
Q Consensus 255 ~~~~~~~l~~l~~--L~~L~L~~n~l~ 279 (478)
+...+..+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 5433344444444 255666665554
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3.5e-17 Score=149.04 Aligned_cols=153 Identities=27% Similarity=0.330 Sum_probs=92.9
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCC
Q 045209 124 KYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHN 203 (478)
Q Consensus 124 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 203 (478)
+.++.+++.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++....+..+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44555555554 4444332 56666666666666655666666666666666666665444445566666666666666
Q ss_pred CCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCcc
Q 045209 204 QLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGT 281 (478)
Q Consensus 204 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 281 (478)
.+++..+..|..+++|++|++++|.++ .+|..+..+ ++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 666555555666666666666666665 555555444 3666666666666654445566666666666666666543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=150.49 Aligned_cols=152 Identities=25% Similarity=0.325 Sum_probs=86.3
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCc-hhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccC
Q 045209 124 KYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIP-SSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQH 202 (478)
Q Consensus 124 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 202 (478)
++++++++.++ .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 45666666665 3454432 345666666666665433 3356666666666666666655555666666666666666
Q ss_pred CCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCC
Q 045209 203 NQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFS 279 (478)
Q Consensus 203 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 279 (478)
|.+++..+..|..+++|++|++++|.+++..|..+..+ ++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 66665555556666666666666666554334433333 25555555555555444455555555555555555544
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=5.6e-18 Score=175.49 Aligned_cols=191 Identities=26% Similarity=0.332 Sum_probs=148.5
Q ss_pred CCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEe
Q 045209 97 NLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKL 176 (478)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 176 (478)
.+..+.+... .+....+ +..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+++..+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~-~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKK-SVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCS-CTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCC-Ccccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 3444555543 3333332 4568899999999999874 44 58889999999999999986544 889999999999
Q ss_pred ecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCC
Q 045209 177 GQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSG 256 (478)
Q Consensus 177 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 256 (478)
++|.+.+ ++ .+..+++|++|++++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+ ++|+.|+|++|.+++
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISD 167 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSC-TTCSEEECCSSCCCC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhccc-CCCCEEECcCCcCCC
Confidence 9999884 33 688999999999999998853 4578889999999999988743 445555 488899998888886
Q ss_pred CCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCC
Q 045209 257 KVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDP 305 (478)
Q Consensus 257 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 305 (478)
..| +..+++|+.|+|++|.+++. + .+..+++|+.|+|++|.+.+.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred chh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 555 78888888999988888753 3 578888888888888888763
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.4e-17 Score=150.79 Aligned_cols=153 Identities=30% Similarity=0.398 Sum_probs=110.5
Q ss_pred CEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccC
Q 045209 148 EALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFN 227 (478)
Q Consensus 148 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 227 (478)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777778777 4555443 67888888888888666667888888888888888888777778888888888888888
Q ss_pred cCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCC
Q 045209 228 KFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTD 304 (478)
Q Consensus 228 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 304 (478)
.++ .+|...+...++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 887 4554443333477777777777776666677777777777777777776665566667777777777766543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=9.8e-18 Score=173.69 Aligned_cols=169 Identities=22% Similarity=0.199 Sum_probs=84.1
Q ss_pred cCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCC
Q 045209 243 QLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYN 322 (478)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n 322 (478)
.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+.+......+++|++|++++|
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 119 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTS
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCC
Confidence 45555555554442 22 24445555555555555543322 4455555555555555554444444555555555555
Q ss_pred CCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccC
Q 045209 323 QFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM 402 (478)
Q Consensus 323 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 402 (478)
.+. .++ .+..+++|+.|++++|.+.+. +.+. ....|+.|+|++|.+.+.++ +..+++|++|+|++|+|++.
T Consensus 120 ~l~--~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l- 190 (605)
T 1m9s_A 120 GIS--DIN-GLVHLPQLESLYLGNNKITDI-TVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 190 (605)
T ss_dssp CCC--CCG-GGGGCTTCSEEECCSSCCCCC-GGGG--SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred CCC--CCc-cccCCCccCEEECCCCccCCc-hhhc--ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-
Confidence 542 222 244455555555555555432 1111 11124555666665555544 55566666666666666554
Q ss_pred CCccCCCCCCEEECCCCcCccc
Q 045209 403 DSLRIVKTLKVLDLSRNLVFGK 424 (478)
Q Consensus 403 ~~~~~l~~L~~L~Ls~N~l~~~ 424 (478)
+.+..+++|+.|+|++|++.+.
T Consensus 191 ~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGGTTCTTCSEEECCSEEEECC
T ss_pred hHHccCCCCCEEEccCCcCcCC
Confidence 3455566666666666666443
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=2e-17 Score=147.04 Aligned_cols=153 Identities=22% Similarity=0.324 Sum_probs=99.2
Q ss_pred CCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCE
Q 045209 118 SGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTY 197 (478)
Q Consensus 118 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 197 (478)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45667777888877776 445 56777778888888776652 235777777777777777777666667777777777
Q ss_pred EEccCCCCCCCCchhhhCCCCCcEEEcccCc-CccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCC
Q 045209 198 LDLQHNQLSGAIPDIFSSLKKLLFLTLSFNK-FSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWN 276 (478)
Q Consensus 198 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 276 (478)
|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+ ++|++|++++|.+++ ++ .+..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l-~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTL-PELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGC-SSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCC-CCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 7777777776666677777777777777776 43 443 33333 366666666666553 22 4455555666666555
Q ss_pred cCC
Q 045209 277 QFS 279 (478)
Q Consensus 277 ~l~ 279 (478)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 543
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=3.8e-17 Score=147.81 Aligned_cols=138 Identities=22% Similarity=0.267 Sum_probs=122.4
Q ss_pred CCCCeeecCCCCCcccccC-ccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEE
Q 045209 96 KNLGGIYLQDLGNISGNFP-DFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQL 174 (478)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 174 (478)
..+++|+++++ .+.+..+ ..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 45689999997 7776644 457889999999999999997777789999999999999999998888889999999999
Q ss_pred EeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccc
Q 045209 175 KLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIP 234 (478)
Q Consensus 175 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 234 (478)
++++|++++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+....+
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999998888899999999999999999998888999999999999999999876554
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=162.72 Aligned_cols=175 Identities=26% Similarity=0.240 Sum_probs=141.4
Q ss_pred EEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCC-CCCCCCEEEccCCCCCCCCCcccCCCCCCC
Q 045209 70 SLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFIS-GLPELKYIYIENNKLSGQIPANIGKLTQLE 148 (478)
Q Consensus 70 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~ 148 (478)
.+++++. .+. .+|..+. +.++.|+++++ .+.+..+..+. ++++|++|+|++|.+++..+..|.++++|+
T Consensus 22 ~l~c~~~------~l~-~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 22 ILSCSKQ------QLP-NVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp EEECCSS------CCS-SCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred EEEeCCC------CcC-ccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 5666654 233 2454432 45899999997 78877777777 899999999999999977778899999999
Q ss_pred EEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhh---hCCCCCcEEEcc
Q 045209 149 ALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIF---SSLKKLLFLTLS 225 (478)
Q Consensus 149 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~ 225 (478)
+|+|++|+++...+..|..+++|++|+|++|++++..+..|..+++|++|++++|.++...+..+ ..+++|+.|+++
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 99999999997777789999999999999999998888899999999999999999997655555 568999999999
Q ss_pred cCcCccccchHHHhcccc--CcEEEccCccCC
Q 045209 226 FNKFSGNIPTSIASLAPQ--LQYLKLGHNVLS 255 (478)
Q Consensus 226 ~n~l~~~~~~~~~~~~~~--L~~L~L~~n~l~ 255 (478)
+|.+++..+..+..+ +. ++.|++++|.+.
T Consensus 172 ~N~l~~l~~~~~~~l-~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 172 SNKLKKLPLTDLQKL-PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SSCCCCCCHHHHHHS-CHHHHTTEECCSSCEE
T ss_pred CCCCCccCHHHhhhc-cHhhcceEEecCCCcc
Confidence 999984333444444 34 588999999886
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=6.1e-17 Score=143.89 Aligned_cols=153 Identities=19% Similarity=0.287 Sum_probs=105.0
Q ss_pred CCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcE
Q 045209 142 GKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLF 221 (478)
Q Consensus 142 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 221 (478)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678888888888887 445 5778888888888888665 2346777888888888888887666777777788888
Q ss_pred EEcccCcCccccchHHHhccccCcEEEccCcc-CCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCC
Q 045209 222 LTLSFNKFSGNIPTSIASLAPQLQYLKLGHNV-LSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYN 300 (478)
Q Consensus 222 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 300 (478)
|++++|.+++..+..+..+ ++|++|++++|. ++ .++ .+..+++|++|++++|++++ ++ .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTL-PKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTC-SSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhC-CCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 8888887776566666555 377777777776 44 333 45666666666666666653 22 4556666666666666
Q ss_pred cCC
Q 045209 301 SLT 303 (478)
Q Consensus 301 ~l~ 303 (478)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 554
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=6e-17 Score=150.69 Aligned_cols=169 Identities=19% Similarity=0.205 Sum_probs=99.2
Q ss_pred CCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEE
Q 045209 216 LKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNL 295 (478)
Q Consensus 216 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 295 (478)
+.++..++++++.++ .++ .+..+ ++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~l-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKEL-SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHHH-TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcc-ccc-chhhc-CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 345666667777766 333 34444 377777777777763 34 56677777777777777775433 6777777777
Q ss_pred eccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCccc
Q 045209 296 NLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEIS 375 (478)
Q Consensus 296 ~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 375 (478)
++++|++++..+... ++|++|++++|+++ .++ .+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~--~~~-~l~~l~~L~~L~Ls~N~i~------------------------- 141 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPS-ACLSRLFLDNNELR--DTD-SLIHLKNLEILSIRNNKLK------------------------- 141 (263)
T ss_dssp ECCSSCCSCCTTCCC-SSCCEEECCSSCCS--BSG-GGTTCTTCCEEECTTSCCC-------------------------
T ss_pred ECCCCccCCcCcccc-CcccEEEccCCccC--CCh-hhcCcccccEEECCCCcCC-------------------------
Confidence 777777776444434 66777777777763 233 3555555555555555544
Q ss_pred ccCccccccCCCCcEEECcCCcCcccCCCccCCCCCCEEECCCCcCcc
Q 045209 376 GGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFG 423 (478)
Q Consensus 376 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 423 (478)
+.. .+..+++|++|++++|++++. ..+..+++|+.|++++|++.+
T Consensus 142 ~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 142 SIV--MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BCG--GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCh--HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 321 344445555555555555544 344445555555555555543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=6.7e-17 Score=150.39 Aligned_cols=169 Identities=22% Similarity=0.309 Sum_probs=95.9
Q ss_pred cCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCE
Q 045209 94 KVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQ 173 (478)
Q Consensus 94 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 173 (478)
++.++..++++.+ .+.+.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCC-Cccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 3445555566554 333222 3556677777777777776 344 56667777777777777774433 667777777
Q ss_pred EEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCcc
Q 045209 174 LKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNV 253 (478)
Q Consensus 174 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 253 (478)
|++++|++++ ++. +.. ++|++|++++|.+++. ..+..+++|+.|++++|++++ ++ .+..+ ++|++|++++|.
T Consensus 90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l-~~L~~L~L~~N~ 161 (263)
T 1xeu_A 90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFL-SKLEVLDLHGNE 161 (263)
T ss_dssp EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGC-TTCCEEECTTSC
T ss_pred EECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccC-CCCCEEECCCCc
Confidence 7777777664 332 222 6666777766666642 235566666666666666653 22 23333 255555555555
Q ss_pred CCCCCCcccCCCCCCCEEeccCCcCC
Q 045209 254 LSGKVPDFLGKFHSLDTLDLSWNQFS 279 (478)
Q Consensus 254 l~~~~~~~l~~l~~L~~L~L~~n~l~ 279 (478)
+++. ..+..+++|+.|++++|.++
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred Ccch--HHhccCCCCCEEeCCCCccc
Confidence 5433 33444445555555555444
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.5e-18 Score=178.69 Aligned_cols=189 Identities=16% Similarity=0.106 Sum_probs=92.0
Q ss_pred CCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCc-------------CccccchHHHhccccCcEEE-ccCccCC
Q 045209 190 SQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNK-------------FSGNIPTSIASLAPQLQYLK-LGHNVLS 255 (478)
Q Consensus 190 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~~~~~~~~~~L~~L~-L~~n~l~ 255 (478)
...+.|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+. +|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-~L~~L~~l~~n~~- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRAAYL- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-HHHHHCGGGHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-hcccCcchhhccc-
Confidence 34556666666666664 456666666666666665443 2222333333332 444443 222221
Q ss_pred CCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccC
Q 045209 256 GKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTS 335 (478)
Q Consensus 256 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 335 (478)
..|+.+.+++|.++.. +. ..|+.|++++|.+++.+.+..+++|+.|++++|.+ ..+|..+..
T Consensus 423 ----------~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l--~~lp~~~~~ 484 (567)
T 1dce_A 423 ----------DDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL--RALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCC--CCCCGGGGG
T ss_pred ----------chhhhhhhhccccccc-Cc-----cCceEEEecCCCCCCCcCccccccCcEeecCcccc--cccchhhhc
Confidence 1222233333333311 11 24666777777776655555666777777777776 356666666
Q ss_pred CCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccC-ccccccCCCCcEEECcCCcCcccC
Q 045209 336 SPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGP-VELLNRTDYLVEFRASGSKLKFNM 402 (478)
Q Consensus 336 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~ 402 (478)
+++|+.|++++|.+++ +|.. .....|++|++++|+|++.+ |..+..+++|+.|++++|++++.+
T Consensus 485 l~~L~~L~Ls~N~l~~-lp~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VDGV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CTTCCEEECCSSCCCC-CGGG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCEEECCCCCCCC-Cccc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 6666555555555543 2311 11112344444444444443 444444444444444444444433
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=9.1e-19 Score=180.32 Aligned_cols=199 Identities=13% Similarity=0.111 Sum_probs=121.7
Q ss_pred hCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCC
Q 045209 214 SSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIF 293 (478)
Q Consensus 214 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 293 (478)
...+.|+.|++++|.++ .+|..+..+. +|++|++++|......+..+ ..+...+..|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcc
Confidence 45678899999999987 7888888885 89998886664110111000 01112334445555555555
Q ss_pred EEe-ccC-------------CcCCCCCCccCcCCCCEEEccCCCCCCCCCCccccCCCCccEEEccCCCCcccCCCCccc
Q 045209 294 NLN-LAY-------------NSLTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKCGIKMNLNNWKPA 359 (478)
Q Consensus 294 ~L~-L~~-------------n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 359 (478)
.|+ ++. |.++.. ....|+.|++++|.+ ..+|. +..+++|+.|++++|.++ .+|.....
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l----~~~~L~~L~Ls~n~l--~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKM----EYADVRVLHLAHKDL--TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHH----HHTTCSEEECTTSCC--SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred cCcchhhcccchhhhhhhhccccccc----CccCceEEEecCCCC--CCCcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 555 333 333321 123588888888887 34676 777777777777777776 55543322
Q ss_pred cccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCccc--CCCccCCCCCCEEECCCCcCcccCCcc------CCC
Q 045209 360 QTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFN--MDSLRIVKTLKVLDLSRNLVFGKLPKA------ISG 431 (478)
Q Consensus 360 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~------l~~ 431 (478)
. ..|+.|++++|.|++. | .+..+++|++|++++|+|++. +..+..+++|+.|+|++|++++..|.. +++
T Consensus 485 l-~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 485 L-RCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp C-TTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred C-CCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 2 2367777777777663 3 566667777777777777666 456666677777777777766654422 455
Q ss_pred CCeee
Q 045209 432 LDKLN 436 (478)
Q Consensus 432 L~~L~ 436 (478)
|+.||
T Consensus 562 L~~L~ 566 (567)
T 1dce_A 562 VSSIL 566 (567)
T ss_dssp CSEEE
T ss_pred cCccC
Confidence 66654
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=7.8e-16 Score=136.08 Aligned_cols=113 Identities=27% Similarity=0.391 Sum_probs=87.9
Q ss_pred CCCEEEccCCCCCCCCCc-ccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEc
Q 045209 122 ELKYIYIENNKLSGQIPA-NIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDL 200 (478)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 200 (478)
+|++|++++|.+++..+. .+..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 777888888877755443 3677888888888888888777777888888888888888888777777778888888888
Q ss_pred cCCCCCCCCchhhhCCCCCcEEEcccCcCccccc
Q 045209 201 QHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIP 234 (478)
Q Consensus 201 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 234 (478)
++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 8888887777778888888888888888876554
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=6.1e-16 Score=133.63 Aligned_cols=132 Identities=25% Similarity=0.285 Sum_probs=60.6
Q ss_pred CCCCEEEccCCCCC-CCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEE
Q 045209 121 PELKYIYIENNKLS-GQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLD 199 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 199 (478)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444444 34444444444555555555544433 3344445555555555555443444444445555555
Q ss_pred ccCCCCCCCC-chhhhCCCCCcEEEcccCcCccccc---hHHHhccccCcEEEccCccCC
Q 045209 200 LQHNQLSGAI-PDIFSSLKKLLFLTLSFNKFSGNIP---TSIASLAPQLQYLKLGHNVLS 255 (478)
Q Consensus 200 l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~L~~n~l~ 255 (478)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+ ++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-PQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-SSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-ccCcEecCCCCChh
Confidence 5555544321 1344455555555555555542221 122222 35555555555444
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.8e-15 Score=130.65 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=89.3
Q ss_pred CCCCCeeecCCCCCcc-cccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCE
Q 045209 95 VKNLGGIYLQDLGNIS-GNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQ 173 (478)
Q Consensus 95 l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 173 (478)
.++|++|+++++ .+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 466777777776 444 56666666777777777777776643 55667777777777777777656666666777777
Q ss_pred EEeecccCCCCC-CccCCCCCCCCEEEccCCCCCCCCc---hhhhCCCCCcEEEcccCcCc
Q 045209 174 LKLGQNFLTGAI-PNGISQLKNLTYLDLQHNQLSGAIP---DIFSSLKKLLFLTLSFNKFS 230 (478)
Q Consensus 174 L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 230 (478)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777777776431 2566677777777777777765444 36667777777777777665
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.1e-16 Score=169.76 Aligned_cols=153 Identities=22% Similarity=0.285 Sum_probs=79.9
Q ss_pred CchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhc
Q 045209 161 IPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASL 240 (478)
Q Consensus 161 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 240 (478)
.+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3455555666666666666655 45555556666666666666665 55555666666666666666665 556555555
Q ss_pred cccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCC-CCCEEeccCCcCCCCCCccCcCCCCEEEc
Q 045209 241 APQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLT-KIFNLNLAYNSLTDPFPVMNVKGIESLDL 319 (478)
Q Consensus 241 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~L~~L~l 319 (478)
. +|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+.... .+..+++++|.+++..+ ..|+.|++
T Consensus 293 ~-~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p----~~l~~l~l 366 (727)
T 4b8c_D 293 F-QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP----HERRFIEI 366 (727)
T ss_dssp T-TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC----CC------
T ss_pred C-CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc----cccceeEe
Confidence 3 6666666666665 4555566666666666666666666555553321 11224566666655433 23555555
Q ss_pred cCC
Q 045209 320 SYN 322 (478)
Q Consensus 320 ~~n 322 (478)
+.|
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 554
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=9.9e-16 Score=129.50 Aligned_cols=108 Identities=22% Similarity=0.322 Sum_probs=50.1
Q ss_pred CCCCEEEccCCCCC-CCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEE
Q 045209 121 PELKYIYIENNKLS-GQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLD 199 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 199 (478)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444444 33444444444444444444444432 3344444444444444444433444444444555555
Q ss_pred ccCCCCCCC-CchhhhCCCCCcEEEcccCcCc
Q 045209 200 LQHNQLSGA-IPDIFSSLKKLLFLTLSFNKFS 230 (478)
Q Consensus 200 l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 230 (478)
+++|.+++. .+..+..+++|++|++++|.++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 555554432 1244455555555555555554
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.8e-15 Score=132.42 Aligned_cols=129 Identities=26% Similarity=0.332 Sum_probs=89.5
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCch-hhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccC
Q 045209 124 KYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPS-SISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQH 202 (478)
Q Consensus 124 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 202 (478)
++++++++.++ .+|..+.. +|++|++++|.+++..+. .|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888876 66665543 788888888888765554 377788888888888888777777777788888888888
Q ss_pred CCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCC
Q 045209 203 NQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSG 256 (478)
Q Consensus 203 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 256 (478)
|.+++..+..|..+++|++|++++|++++..|..+..+ ++|++|++++|.+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL-NSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC-TTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC-CCCCEEEeCCCCccC
Confidence 87776666667677777777777776665444444443 255555555555543
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=5.6e-16 Score=149.21 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=40.2
Q ss_pred CCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCC--CCCCccCcCCCC-EEEccCCCCCCCCC-CccccCCCCcc
Q 045209 265 FHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLT--DPFPVMNVKGIE-SLDLSYNQFHLQQI-PSWVTSSPIIF 340 (478)
Q Consensus 265 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~~L~-~L~l~~n~l~~~~~-~~~~~~~~~L~ 340 (478)
+++|+.+++++|+++...+..|.++.+|+.+++.+| ++ +...+..+.+|+ .+++.+ .+ ..+ +..+..|++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l--~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV--TAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC--CEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc--eEEchhhhhCCccCC
Confidence 455555555555555444444555555555555554 32 222334455555 555554 33 122 23455555555
Q ss_pred EEEccCCCCc
Q 045209 341 SLKLAKCGIK 350 (478)
Q Consensus 341 ~L~l~~n~l~ 350 (478)
.++++.|.+.
T Consensus 301 ~l~l~~n~i~ 310 (329)
T 3sb4_A 301 YVLATGDKIT 310 (329)
T ss_dssp EEEECSSCCC
T ss_pred EEEeCCCccC
Confidence 5555555554
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.6e-15 Score=126.90 Aligned_cols=128 Identities=24% Similarity=0.364 Sum_probs=88.5
Q ss_pred CCCCCeeecCCCCCcc-cccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCE
Q 045209 95 VKNLGGIYLQDLGNIS-GNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQ 173 (478)
Q Consensus 95 l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 173 (478)
.++|++|+++++ .+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 466777777776 555 56676667777777777777777644 55677777777777777777656666666777777
Q ss_pred EEeecccCCCC-CCccCCCCCCCCEEEccCCCCCCCCc---hhhhCCCCCcEEEcc
Q 045209 174 LKLGQNFLTGA-IPNGISQLKNLTYLDLQHNQLSGAIP---DIFSSLKKLLFLTLS 225 (478)
Q Consensus 174 L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~ 225 (478)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777643 23566777777777777777765544 456677777777665
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=3.8e-14 Score=125.20 Aligned_cols=110 Identities=26% Similarity=0.390 Sum_probs=84.2
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEc
Q 045209 121 PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDL 200 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 200 (478)
++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 46777788877776 56677777788888888888887766677777888888888888887666667777888888888
Q ss_pred cCCCCCCCCchhhhCCCCCcEEEcccCcCcc
Q 045209 201 QHNQLSGAIPDIFSSLKKLLFLTLSFNKFSG 231 (478)
Q Consensus 201 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 231 (478)
++|.++...+..|..+++|+.|++++|.+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8888876666667777888888888887753
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=3.7e-14 Score=125.24 Aligned_cols=126 Identities=29% Similarity=0.426 Sum_probs=92.2
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCC
Q 045209 124 KYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHN 203 (478)
Q Consensus 124 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 203 (478)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888877 5666543 57888888888888 56677888888888888888888776777888888888888888
Q ss_pred CCCCCCchhhhCCCCCcEEEcccCcCccccchH-HHhccccCcEEEccCccCC
Q 045209 204 QLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTS-IASLAPQLQYLKLGHNVLS 255 (478)
Q Consensus 204 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~L~~n~l~ 255 (478)
.+++..+..|..+++|++|++++|.++ .+|.. +..+ ++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l-~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDL-SALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTC-TTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcC-ccccEEEeCCCCee
Confidence 888777777777777888887777776 34332 3233 35556665555543
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=7.7e-14 Score=121.44 Aligned_cols=114 Identities=31% Similarity=0.321 Sum_probs=86.0
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEc
Q 045209 121 PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDL 200 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 200 (478)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 57778888888777555556677788888888888887666666777888888888888887666666777888888888
Q ss_pred cCCCCCCCCchhhhCCCCCcEEEcccCcCccccc
Q 045209 201 QHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIP 234 (478)
Q Consensus 201 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 234 (478)
++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888876656666778888888888888776544
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=6.5e-14 Score=121.92 Aligned_cols=129 Identities=26% Similarity=0.326 Sum_probs=74.5
Q ss_pred CCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccC
Q 045209 123 LKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQH 202 (478)
Q Consensus 123 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 202 (478)
.+.++++++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356677777666 444333 25677777777777755555566667777777777776654444556666666666666
Q ss_pred CCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCC
Q 045209 203 NQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLS 255 (478)
Q Consensus 203 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 255 (478)
|.+++..+..+..+++|++|++++|.++ .+|...+...++|++|++++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 6666555555555666666666666555 233222221124444444444444
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=1.3e-14 Score=139.58 Aligned_cols=101 Identities=18% Similarity=0.095 Sum_probs=82.7
Q ss_pred CCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCC-EEeccCCcCCccchhhhcCCCCCCE
Q 045209 216 LKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLD-TLDLSWNQFSGTLPKSFSNLTKIFN 294 (478)
Q Consensus 216 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~ 294 (478)
+++|+.+++++|.++ .++...+....+|+++++.+| ++......|..+++|+ .+++.+ .++...+..|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 789999999999888 676665555569999999987 7656667889999999 999988 677666788999999999
Q ss_pred EeccCCcCCC--CCCccCcCCCCEEEc
Q 045209 295 LNLAYNSLTD--PFPVMNVKGIESLDL 319 (478)
Q Consensus 295 L~L~~n~l~~--~~~~~~~~~L~~L~l 319 (478)
++++.|.++. ...+..+++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999998874 345668888988864
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=5.2e-14 Score=122.44 Aligned_cols=132 Identities=20% Similarity=0.237 Sum_probs=61.5
Q ss_pred cccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCC
Q 045209 92 LVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQL 171 (478)
Q Consensus 92 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 171 (478)
+.++.+|+.|+++++ .+.. ++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTS-CCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCC-CCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 334455555555554 3332 232112222555555555555532 344555555555555555553333333455555
Q ss_pred CEEEeecccCCCCCCc--cCCCCCCCCEEEccCCCCCCCCch----hhhCCCCCcEEEcccCcC
Q 045209 172 TQLKLGQNFLTGAIPN--GISQLKNLTYLDLQHNQLSGAIPD----IFSSLKKLLFLTLSFNKF 229 (478)
Q Consensus 172 ~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l 229 (478)
++|++++|.+. .+|. .+..+++|++|++++|.+.. .|. .+..+++|+.|+++.|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555555553 2332 44455555555555555542 222 244455555555554443
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=3.1e-12 Score=125.95 Aligned_cols=266 Identities=10% Similarity=0.054 Sum_probs=140.8
Q ss_pred CCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEE
Q 045209 95 VKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQL 174 (478)
Q Consensus 95 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 174 (478)
+..++.+.+.+ .+...-..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .++.+....|.++++|+.+
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 45666666654 3444444556654 6777777655 443444455553 577777764 5554555667777777777
Q ss_pred EeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccC
Q 045209 175 KLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVL 254 (478)
Q Consensus 175 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 254 (478)
++..|.++......|. ..+|+.+.+..+ +......+|..+++|+.+++..+ ++ .++...+... +|+.+.+. +.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~~-~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRES-GITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTTC-CCSEEEEE-TTC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-CccccccccC-CccEEEeC-CCc
Confidence 7777766643333444 567777777643 55455566667777777777653 33 3333333332 66666663 333
Q ss_pred CCCCCcccCCCCCCCEEeccCCcCC-----ccchhhhcCCCCCCEEeccCCcCCCCCCccCcCCCCEEEccCCCCCCCCC
Q 045209 255 SGKVPDFLGKFHSLDTLDLSWNQFS-----GTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQFHLQQI 329 (478)
Q Consensus 255 ~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~ 329 (478)
+......|..+++|+.+++.++.+. ...+..|.++++|+.+.+..+ ++. --
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~-----------------------I~ 315 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRI-----------------------LG 315 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCE-----------------------EC
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEE-----------------------Eh
Confidence 4333455566666666666555443 233344555555555555422 221 11
Q ss_pred CccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCC-CCcEEECcCCcCc
Q 045209 330 PSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTD-YLVEFRASGSKLK 399 (478)
Q Consensus 330 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~ 399 (478)
...+..|.+|+.+.+..+ ++ .+....+... .|+.+++++|.+.......|.+++ .++.+.+..+.+.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 222344444444444332 22 1222111112 355666666655555555565553 5666666665543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1e-13 Score=120.53 Aligned_cols=109 Identities=24% Similarity=0.280 Sum_probs=57.4
Q ss_pred CCCCCCCCEEEccCCCCCCCCCcccCCC-CCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCC
Q 045209 117 ISGLPELKYIYIENNKLSGQIPANIGKL-TQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNL 195 (478)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 195 (478)
+.++++|++|++++|.++ .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 345566677777777666 3333 3333 3666666666666543 345555556666666555553322223455555
Q ss_pred CEEEccCCCCCCCCch--hhhCCCCCcEEEcccCcCc
Q 045209 196 TYLDLQHNQLSGAIPD--IFSSLKKLLFLTLSFNKFS 230 (478)
Q Consensus 196 ~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~ 230 (478)
++|++++|.+. .+|. .+..+++|+.|++++|.++
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 55555555553 2332 4445555555555555554
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=7.2e-12 Score=123.33 Aligned_cols=246 Identities=13% Similarity=0.101 Sum_probs=182.3
Q ss_pred ccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCC
Q 045209 89 SSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQL 168 (478)
Q Consensus 89 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l 168 (478)
..+|.++ +|+.+.+.. .+...-..+|.++ +|+.+.+.. .+.......|.++++|+.++++.|.++.+....|. .
T Consensus 129 ~~aF~~~-~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~ 202 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y 202 (401)
T ss_dssp TTTTTTC-CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred HhhcccC-CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence 3456664 799999876 3555555667774 799999986 56655667899999999999999999855555565 6
Q ss_pred CCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEE
Q 045209 169 TQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLK 248 (478)
Q Consensus 169 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 248 (478)
.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.....+|.. .+|+.+.+. +.++ .++...+..+++|+.++
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEE
Confidence 89999999854 66566778999999999999874 55455667777 789999995 4465 45554454456999999
Q ss_pred ccCccCC-----CCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCC--CCCCccCcCCCCEEEccC
Q 045209 249 LGHNVLS-----GKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLT--DPFPVMNVKGIESLDLSY 321 (478)
Q Consensus 249 L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~~L~~L~l~~ 321 (478)
+.++.+. ......|..+++|+.+++.+ .++......|.++.+|+.+.+..+ ++ +...+..+ +|+.+++.+
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 9988764 34557788999999999984 477666778999999999999665 43 34456677 899999999
Q ss_pred CCCCCCCCCccccCCC-CccEEEccCCCC
Q 045209 322 NQFHLQQIPSWVTSSP-IIFSLKLAKCGI 349 (478)
Q Consensus 322 n~l~~~~~~~~~~~~~-~L~~L~l~~n~l 349 (478)
|.+. ...+..+..++ .++.+.+..+.+
T Consensus 355 n~~~-~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 355 TTPP-QVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSCC-BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCc-ccccccccCCCCCccEEEeCHHHH
Confidence 8763 32334444443 566666655543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=2.4e-15 Score=133.66 Aligned_cols=132 Identities=23% Similarity=0.306 Sum_probs=80.8
Q ss_pred hhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhcccc
Q 045209 164 SISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQ 243 (478)
Q Consensus 164 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 243 (478)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++ +| .+..+ ++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l-~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL-VN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH-HH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC-CC
Confidence 55556666666666666553 34 5555566666666666655 345555556667777777777663 44 34444 37
Q ss_pred CcEEEccCccCCCCCC-cccCCCCCCCEEeccCCcCCccchh----------hhcCCCCCCEEeccCCcCC
Q 045209 244 LQYLKLGHNVLSGKVP-DFLGKFHSLDTLDLSWNQFSGTLPK----------SFSNLTKIFNLNLAYNSLT 303 (478)
Q Consensus 244 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----------~l~~l~~L~~L~L~~n~l~ 303 (478)
|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|+ ++.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777777764222 3566777777777777777655443 256677777775 45444
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.3e-15 Score=135.44 Aligned_cols=136 Identities=22% Similarity=0.287 Sum_probs=87.1
Q ss_pred cccCCCCCeeecCCCCCcccccCc------cCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhh
Q 045209 92 LVKVKNLGGIYLQDLGNISGNFPD------FISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSI 165 (478)
Q Consensus 92 l~~l~~L~~L~l~~~~~~~~~~~~------~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 165 (478)
+.....++.++++.+ .+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~-~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKV-ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEE-ECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchhee-EeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 344455555555554 45555444 66677777777777777764 55 6666777777777777776 456566
Q ss_pred cCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCc-hhhhCCCCCcEEEcccCcCcccc
Q 045209 166 SQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIP-DIFSSLKKLLFLTLSFNKFSGNI 233 (478)
Q Consensus 166 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~ 233 (478)
..+++|++|++++|++++ +| .+..+++|++|++++|.++...+ ..+..+++|++|++++|.+.+..
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 666777777777777764 33 46666677777777777664322 35666777777777777665443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.3e-12 Score=112.83 Aligned_cols=107 Identities=30% Similarity=0.332 Sum_probs=79.7
Q ss_pred CCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccC
Q 045209 123 LKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQH 202 (478)
Q Consensus 123 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 202 (478)
.++++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467777777776 4565543 6778888888888777677777788888888888888766555667788888888888
Q ss_pred CCCCCCCchhhhCCCCCcEEEcccCcCccc
Q 045209 203 NQLSGAIPDIFSSLKKLLFLTLSFNKFSGN 232 (478)
Q Consensus 203 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 232 (478)
|.+++..+..|..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888766666777788888888888877644
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=2.9e-12 Score=110.96 Aligned_cols=104 Identities=30% Similarity=0.385 Sum_probs=71.7
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCC
Q 045209 124 KYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHN 203 (478)
Q Consensus 124 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 203 (478)
+.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56677777665 5555443 66777777777777666666777777777777777777544445667777777777777
Q ss_pred CCCCCCchhhhCCCCCcEEEcccCcCc
Q 045209 204 QLSGAIPDIFSSLKKLLFLTLSFNKFS 230 (478)
Q Consensus 204 ~l~~~~~~~l~~l~~L~~L~L~~n~l~ 230 (478)
.+.+..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777555555777777777777777765
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=8.7e-12 Score=107.55 Aligned_cols=106 Identities=27% Similarity=0.330 Sum_probs=84.0
Q ss_pred eeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecc
Q 045209 100 GIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQN 179 (478)
Q Consensus 100 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 179 (478)
.++++++ .+. .+|..+ .++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 13 ~l~~s~n-~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 13 TVDCSGK-SLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EEECTTS-CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCC-CcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4444443 332 244434 278899999999998777888899999999999999999777777889999999999999
Q ss_pred cCCCCCCccCCCCCCCCEEEccCCCCCCCC
Q 045209 180 FLTGAIPNGISQLKNLTYLDLQHNQLSGAI 209 (478)
Q Consensus 180 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 209 (478)
++++..+..+..+++|++|++++|.+....
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 998766667889999999999999887543
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=5.6e-11 Score=117.11 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=97.8
Q ss_pred ccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCC
Q 045209 91 SLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQ 170 (478)
Q Consensus 91 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 170 (478)
+|.++.+|+.+.+.. .+...-..+|.+|++|+.+++..+ ++..-...|.++..|+.+.+..+ ++......|.++..
T Consensus 66 AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 556666777776654 343333455666777777776543 33233345666666666555432 22222333444432
Q ss_pred CCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEcc
Q 045209 171 LTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLG 250 (478)
Q Consensus 171 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 250 (478)
++ ..+. ..+......+|.++++|+.+.+..+. .......|..+.+|+.+.+..+ ++ .+....+.....|+.+.+.
T Consensus 142 ~~-~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 142 KE-ITIP-EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFP 216 (394)
T ss_dssp SE-EECC-TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCC
T ss_pred cc-cccC-ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecC
Confidence 22 2111 11111223455666666666665432 2233445555666666665543 22 2222222222345555444
Q ss_pred CccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCC-CCCCccCcCCCCEEEccC
Q 045209 251 HNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLT-DPFPVMNVKGIESLDLSY 321 (478)
Q Consensus 251 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~L~~L~l~~ 321 (478)
.+... +.+.......|+.+.+... ++......+..+..++.+.+..+... +...+..+..++.+....
T Consensus 217 ~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 217 NSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp TTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECS
T ss_pred CCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCc
Confidence 33221 1122223345555555432 22122334445555555555444222 222233444444444443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=1.7e-11 Score=106.13 Aligned_cols=95 Identities=28% Similarity=0.408 Sum_probs=77.8
Q ss_pred ccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCC
Q 045209 112 NFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQ 191 (478)
Q Consensus 112 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 191 (478)
.+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 103 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDN 103 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhcc
Confidence 4454443 78889999999988777888889999999999999998766666788999999999999998665556888
Q ss_pred CCCCCEEEccCCCCCCC
Q 045209 192 LKNLTYLDLQHNQLSGA 208 (478)
Q Consensus 192 l~~L~~L~l~~n~l~~~ 208 (478)
+++|++|++++|.+...
T Consensus 104 l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 104 LKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CTTCSEEECCSSCBCTT
T ss_pred ccCCCEEEeCCCCcccc
Confidence 99999999999988743
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.30 E-value=1.3e-10 Score=114.50 Aligned_cols=302 Identities=13% Similarity=0.036 Sum_probs=191.0
Q ss_pred CEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCC
Q 045209 67 RVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQ 146 (478)
Q Consensus 67 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~ 146 (478)
+++++.++. .+...-..+|.++++|+.+++.+ .+...-...|.++..|+.+.+..+ +......+|.++..
T Consensus 72 ~L~~i~lp~-------~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 72 KVTEIKIPS-------TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TEEEEECCT-------TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred CceEEEeCC-------CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 577777753 24433345788999999999976 344444567888999998877654 33334455666654
Q ss_pred CCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEccc
Q 045209 147 LEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSF 226 (478)
Q Consensus 147 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 226 (478)
++..... .........|.++++|+.+.+..+. .......|.++.+|+.+.+..+ +......+|..+..|+.+.+..
T Consensus 142 ~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 3333222 2222334678899999999997653 3345567888999999998765 5545566788888999888876
Q ss_pred CcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcCCCCC
Q 045209 227 NKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPF 306 (478)
Q Consensus 227 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 306 (478)
+... +....+.. ..|+.+.+.... +......+..+..++.+.+..+... .....+..+..++.+......+.. .
T Consensus 218 ~~~~--i~~~~~~~-~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~-~ 291 (394)
T 4fs7_A 218 SLYY--LGDFALSK-TGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE-K 291 (394)
T ss_dssp TCCE--ECTTTTTT-CCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT-T
T ss_pred CceE--eehhhccc-CCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc-c
Confidence 5432 22333333 388888886543 3234456778899999999877543 555678889999998887765433 4
Q ss_pred CccCcCCCCEEEccCCCCCCCCC-CccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccC
Q 045209 307 PVMNVKGIESLDLSYNQFHLQQI-PSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRT 385 (478)
Q Consensus 307 ~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 385 (478)
.+..+.+|+.+.+..+ + ..+ ...+..|.+|+.+++..+ ++.+....|.++
T Consensus 292 ~F~~~~~L~~i~l~~~-i--~~I~~~aF~~c~~L~~i~lp~~--------------------------v~~I~~~aF~~c 342 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-V--KFIGEEAFESCTSLVSIDLPYL--------------------------VEEIGKRSFRGC 342 (394)
T ss_dssp TTTTCTTCCEEEECTT-C--CEECTTTTTTCTTCCEECCCTT--------------------------CCEECTTTTTTC
T ss_pred cccccccccccccccc-c--ceechhhhcCCCCCCEEEeCCc--------------------------ccEEhHHhccCC
Confidence 4567788888888665 3 223 334666777777766432 222233445555
Q ss_pred CCCcEEECcCCcCcccC-CCccCCCCCCEEECCC
Q 045209 386 DYLVEFRASGSKLKFNM-DSLRIVKTLKVLDLSR 418 (478)
Q Consensus 386 ~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L~Ls~ 418 (478)
.+|+.+++..+ ++... .+|..+.+|+.+++..
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 55555555444 33222 3455555555555543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=2.1e-12 Score=125.87 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=16.7
Q ss_pred CCCCEEeccCCcCCcc----chhhhcCCCCCCEEeccCCcCC
Q 045209 266 HSLDTLDLSWNQFSGT----LPKSFSNLTKIFNLNLAYNSLT 303 (478)
Q Consensus 266 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 303 (478)
++|++|+|++|.+++. ++..+...++|++|+|++|.++
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 4455555555544321 2222334444555555555443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1.7e-12 Score=126.49 Aligned_cols=14 Identities=7% Similarity=0.358 Sum_probs=7.9
Q ss_pred CCCCEEEccCCCCC
Q 045209 121 PELKYIYIENNKLS 134 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~ 134 (478)
+.|++|++++|.++
T Consensus 72 ~~L~~L~Ls~n~l~ 85 (372)
T 3un9_A 72 SSLRQLNLAGVRMT 85 (372)
T ss_dssp TTCCEEECTTSCCC
T ss_pred hhCCEEEecCCCCC
Confidence 44556666665554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.4e-10 Score=112.08 Aligned_cols=92 Identities=24% Similarity=0.285 Sum_probs=48.1
Q ss_pred cCccCCCCCCCCEEEccC-CCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCC
Q 045209 113 FPDFISGLPELKYIYIEN-NKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQ 191 (478)
Q Consensus 113 ~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 191 (478)
+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 444 55555555555554 5555444445555555555555555555555555555555555555555555333333333
Q ss_pred CCCCCEEEccCCCCC
Q 045209 192 LKNLTYLDLQHNQLS 206 (478)
Q Consensus 192 l~~L~~L~l~~n~l~ 206 (478)
++ |++|++.+|.+.
T Consensus 103 ~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 103 LS-LQELVLSGNPLH 116 (347)
T ss_dssp CC-CCEEECCSSCCC
T ss_pred CC-ceEEEeeCCCcc
Confidence 33 555555555544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=3.4e-10 Score=109.44 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=63.4
Q ss_pred EEccCC-CCCCCCCcccCCCCCCCEEEeec-CcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCC
Q 045209 126 IYIENN-KLSGQIPANIGKLTQLEALSFSG-NRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHN 203 (478)
Q Consensus 126 L~Ls~n-~~~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 203 (478)
++.+++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 555 3555 66666666666664 6666555556666666666666666666666666666666666666666
Q ss_pred CCCCCCchhhhCCCCCcEEEcccCcCc
Q 045209 204 QLSGAIPDIFSSLKKLLFLTLSFNKFS 230 (478)
Q Consensus 204 ~l~~~~~~~l~~l~~L~~L~L~~n~l~ 230 (478)
.+++..+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66654444444444 666666666665
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.09 E-value=1.1e-08 Score=100.61 Aligned_cols=130 Identities=13% Similarity=0.125 Sum_probs=65.9
Q ss_pred ccccCC-CCCeeecCCCCCcccccCccCCCCCCCCEEEccCCC---CCCCCCcccCCCCCCCEEEeecCcCCCCCchhhc
Q 045209 91 SLVKVK-NLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNK---LSGQIPANIGKLTQLEALSFSGNRFTGPIPSSIS 166 (478)
Q Consensus 91 ~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~---~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 166 (478)
+|.+++ .|+.+.+.. .++..-..+|.++.+|+.+.+..+. ++..-..+|.++.+|+.+.+..+ ++.+....|.
T Consensus 58 aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 455553 466666654 3444444556667777777666542 33223345556666665555432 3323344555
Q ss_pred CCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEccc
Q 045209 167 QLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSF 226 (478)
Q Consensus 167 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 226 (478)
.+.+|+.+.+..+ +.......+..+..|+.+.+..+ +......+|. ..+|+.+.+..
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~ 191 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPA 191 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECT
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECC
Confidence 6666666666432 22233345556666666666543 2222223332 24455555543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=1.8e-08 Score=99.13 Aligned_cols=314 Identities=12% Similarity=0.102 Sum_probs=179.3
Q ss_pred ccCCCCC-CCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCc---CCCCCchhhcCCCCCCEEEeecccCCCCCCccCC
Q 045209 115 DFISGLP-ELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNR---FTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGIS 190 (478)
Q Consensus 115 ~~l~~l~-~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 190 (478)
.+|.++. .|+.+.+..+ ++..-..+|.++.+|+.+.+..+. ++.+-..+|..+.+|+.+.+..+ ++......|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4566664 5888888654 554555678888888888887663 44444566778888887776543 3434455678
Q ss_pred CCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccCccCCCCCCcccCCCCCCCE
Q 045209 191 QLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGHNVLSGKVPDFLGKFHSLDT 270 (478)
Q Consensus 191 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 270 (478)
.+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++ .+....+... .|+.+.+..+... .....+..+..++.
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~~-~l~~i~ip~~~~~-i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTGT-ALTQIHIPAKVTR-IGTNAFSECFALST 209 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTC-CCSEEEECTTCCE-ECTTTTTTCTTCCE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccccc-ceeEEEECCcccc-cccchhhhccccce
Confidence 8888888888643 33344567777888888888754 33 3434334443 7888877654322 33455666777777
Q ss_pred EeccCCcCCccchhh--------------hcCCCCCCEEeccCCc-CCCCCCccCcCCCCEEEccCCCCCCCCCCccccC
Q 045209 271 LDLSWNQFSGTLPKS--------------FSNLTKIFNLNLAYNS-LTDPFPVMNVKGIESLDLSYNQFHLQQIPSWVTS 335 (478)
Q Consensus 271 L~L~~n~l~~~~~~~--------------l~~l~~L~~L~L~~n~-l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 335 (478)
.....+..... ... +.....+..+.+...- .-+...+..+..|+.+.+..+... --...+..
T Consensus 210 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~--I~~~aF~~ 286 (394)
T 4gt6_A 210 ITSDSESYPAI-DNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS--IGTGAFMN 286 (394)
T ss_dssp EEECCSSSCBS-SSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE--ECTTTTTT
T ss_pred ecccccccccc-cceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce--ecCccccc
Confidence 66654433211 100 1112233333332221 112334456667777777655431 12334566
Q ss_pred CCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccC-CCccCCCCCCEE
Q 045209 336 SPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM-DSLRIVKTLKVL 414 (478)
Q Consensus 336 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L 414 (478)
++.|+.+.+.. .+. .++...+.....|+.+++..+ ++.+....|.++.+|+.+.+..+ ++... .+|..+.+|+.+
T Consensus 287 c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 287 CPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp CTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred ccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 77777777753 232 344443333334677777653 55556677888888888888654 44333 568888888888
Q ss_pred ECCCCcCcccCCccCCCCCeeeccCCcc
Q 045209 415 DLSRNLVFGKLPKAISGLDKLNVSFNNL 442 (478)
Q Consensus 415 ~Ls~N~l~~~~p~~l~~L~~L~ls~N~l 442 (478)
++.++......-....+|+.+.+..|.+
T Consensus 363 ~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 363 EYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EESSCHHHHHTCBCCCCC----------
T ss_pred EECCceeehhhhhccCCCCEEEeCCCCE
Confidence 8888754322112234677777665544
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=5.8e-10 Score=107.80 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=56.4
Q ss_pred CCCCEEEEEcCCCCCCCCCc---ceeecccccccCCCCCeeecCCCCC----c----ccccCccCCCCCCCCEEEccCCC
Q 045209 64 SGDRVTSLSLNGQPEKPNSF---LSGTISSSLVKVKNLGGIYLQDLGN----I----SGNFPDFISGLPELKYIYIENNK 132 (478)
Q Consensus 64 ~~~~v~~l~l~~~~~~~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~----~----~~~~~~~l~~l~~L~~L~Ls~n~ 132 (478)
...+|++|.+.... .+... ....+.+++.++++|+.|.+.+... + .+.+...+..+|+|+.|+++++.
T Consensus 105 ~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 105 KLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp TGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred CchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 34578888877432 11000 0112234456788888888765311 1 11233444566777777777662
Q ss_pred CCCCCCcccCCCCCCCEEEeecCcCCCCCchhhc--CCCCCCEEEee
Q 045209 133 LSGQIPANIGKLTQLEALSFSGNRFTGPIPSSIS--QLTQLTQLKLG 177 (478)
Q Consensus 133 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~ 177 (478)
-. .++. + .+++|++|++..+.++......+. .+++|+.|+|+
T Consensus 184 ~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 184 NL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred Cc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 11 1222 2 256777777766665432222232 46667766664
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=1.1e-09 Score=105.73 Aligned_cols=183 Identities=16% Similarity=0.245 Sum_probs=122.0
Q ss_pred CccCCCCCCCCEEEccCCCCC---------CCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCC
Q 045209 114 PDFISGLPELKYIYIENNKLS---------GQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGA 184 (478)
Q Consensus 114 ~~~l~~l~~L~~L~Ls~n~~~---------~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 184 (478)
.+....+++|+.|.+...... +.+...+..+|+|+.|.++++.-. .++. +. +++|++|++..+.+...
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChH
Confidence 344556789999998765331 123344567899999999887311 2333 33 78999999998887643
Q ss_pred CCccC--CCCCCCCEEEccC--CCCCCC-----Cchhh--hCCCCCcEEEcccCcCccccchHHHh--ccccCcEEEccC
Q 045209 185 IPNGI--SQLKNLTYLDLQH--NQLSGA-----IPDIF--SSLKKLLFLTLSFNKFSGNIPTSIAS--LAPQLQYLKLGH 251 (478)
Q Consensus 185 ~~~~l--~~l~~L~~L~l~~--n~l~~~-----~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~--~~~~L~~L~L~~ 251 (478)
....+ ..+++|++|+|+. +...+. +...+ ..+++|+.|++.+|.+.+..+..+.. ..++|++|+|+.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 32333 3789999999863 211111 11222 25789999999999987655555543 346899999999
Q ss_pred ccCCCCC----CcccCCCCCCCEEeccCCcCCccchhhhcC-CCCCCEEeccCCc
Q 045209 252 NVLSGKV----PDFLGKFHSLDTLDLSWNQFSGTLPKSFSN-LTKIFNLNLAYNS 301 (478)
Q Consensus 252 n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~ 301 (478)
|.+++.. +..+..+++|+.|++++|.+++.....+.. + ...++++.+.
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 9887642 233345789999999999987665555543 3 4568888876
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.68 E-value=3.5e-06 Score=82.13 Aligned_cols=299 Identities=8% Similarity=0.014 Sum_probs=141.7
Q ss_pred cccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCcCCCCCchhhcCCCCC
Q 045209 92 LVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNRFTGPIPSSISQLTQL 171 (478)
Q Consensus 92 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 171 (478)
+....+|+.+.+.. .++..-..+|.+|.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ ++.+....|.. .+|
T Consensus 42 ~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred cccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 34556677777765 455444566777888888887643 443334456665 5666666533 33233334444 367
Q ss_pred CEEEeecccCCCCCCccCCCCCCCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCcCccccchHHHhccccCcEEEccC
Q 045209 172 TQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNKFSGNIPTSIASLAPQLQYLKLGH 251 (478)
Q Consensus 172 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~ 251 (478)
+.+.+..+ ++......|.+. .++...+..+ ++......+....+++.+.+..+......... ...
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~-~~~----------- 180 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENY-VLY----------- 180 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETT-EEE-----------
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccc-eec-----------
Confidence 77777654 221222334333 4555555432 33333445566666666666543322100000 000
Q ss_pred ccCCCCCCcccCCCCCCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcC-CCCCCccCcCCCCEEEccCCCCCCCCC-
Q 045209 252 NVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL-TDPFPVMNVKGIESLDLSYNQFHLQQI- 329 (478)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~~L~~L~l~~n~l~~~~~- 329 (478)
+. .......+.....+..+.+.... .......+..+..|+.+.+..+-. .+...+..+..|+.+.+..+ + ..+
T Consensus 181 ~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v--~~I~ 255 (379)
T 4h09_A 181 NK-NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-V--TSIG 255 (379)
T ss_dssp ET-TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-C--CEEC
T ss_pred cc-ccceeccccccccccccccccce-eEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-c--cEeC
Confidence 00 00111122233344444443321 112233444555555555543311 12223334555555555443 1 111
Q ss_pred CccccCCCCccEEEccCCCCcccCCCCccccccCCcEEEccCCcccccCccccccCCCCcEEECcCCcCcccC-CCccCC
Q 045209 330 PSWVTSSPIIFSLKLAKCGIKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM-DSLRIV 408 (478)
Q Consensus 330 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~l 408 (478)
...+..+.+|+.+.+..+ +. .++...+.....|+.+++.++.++.+....|.++.+|+.+.+..+ ++... .+|.++
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 223445555555555432 11 222222222223566666666666555666777777777777543 43332 456666
Q ss_pred CCCCEEECCCC
Q 045209 409 KTLKVLDLSRN 419 (478)
Q Consensus 409 ~~L~~L~Ls~N 419 (478)
.+|+.+.+..+
T Consensus 333 ~~L~~i~ip~~ 343 (379)
T 4h09_A 333 KALSTISYPKS 343 (379)
T ss_dssp TTCCCCCCCTT
T ss_pred CCCCEEEECCc
Confidence 67776666443
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.52 E-value=1.9e-05 Score=76.78 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=78.7
Q ss_pred CEEEEEcCCCCCCCCCcceeecccccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccCCCCCCCCCcccCCCCC
Q 045209 67 RVTSLSLNGQPEKPNSFLSGTISSSLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIENNKLSGQIPANIGKLTQ 146 (478)
Q Consensus 67 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~ 146 (478)
+++.+.+.. +++..-..+|.++.+|+.+++.. .+...-..+|.++ +|+.+.+..+ ++.....+|.. .+
T Consensus 47 ~i~~v~ip~-------~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 47 RISEVRVNS-------GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp GCSEEEECT-------TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred CCEEEEeCC-------CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 566777654 24444456889999999999975 4554445667776 6888877644 44233344544 48
Q ss_pred CCEEEeecCcCCCCCchhhcCCCCCCEEEeecccCCCCCCccCCCCCCCCEEEccCCCC
Q 045209 147 LEALSFSGNRFTGPIPSSISQLTQLTQLKLGQNFLTGAIPNGISQLKNLTYLDLQHNQL 205 (478)
Q Consensus 147 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 205 (478)
|+.+.+..+ ++......|.+ .+++.+.+..+ ++......+..+..++...+..+..
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~ 170 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNK 170 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCS
T ss_pred cccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccc
Confidence 999999765 33233344544 46777766543 3434456677888888888765443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=1.9e-07 Score=81.21 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=20.2
Q ss_pred cCCCCCCCEEec--cCCcCCcc----chhhhcCCCCCCEEeccCCcC
Q 045209 262 LGKFHSLDTLDL--SWNQFSGT----LPKSFSNLTKIFNLNLAYNSL 302 (478)
Q Consensus 262 l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 302 (478)
+...++|++|++ ++|.+... +...+...++|++|++++|.+
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 334445556666 55555433 222334445555555555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=4.6e-08 Score=85.23 Aligned_cols=118 Identities=18% Similarity=0.320 Sum_probs=71.2
Q ss_pred cCccCCCCCCCCEEEccCC-CCCCC----CCcccCCCCCCCEEEeecCcCCCC----CchhhcCCCCCCEEEeecccCCC
Q 045209 113 FPDFISGLPELKYIYIENN-KLSGQ----IPANIGKLTQLEALSFSGNRFTGP----IPSSISQLTQLTQLKLGQNFLTG 183 (478)
Q Consensus 113 ~~~~l~~l~~L~~L~Ls~n-~~~~~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~ 183 (478)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...+.|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3344556667777777776 66522 233445566777777777776532 23334455677777777777763
Q ss_pred C----CCccCCCCCCCCEEEc--cCCCCCCC----CchhhhCCCCCcEEEcccCcCc
Q 045209 184 A----IPNGISQLKNLTYLDL--QHNQLSGA----IPDIFSSLKKLLFLTLSFNKFS 230 (478)
Q Consensus 184 ~----~~~~l~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 230 (478)
. +...+...+.|++|++ ++|.+... +.+.+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3 3345556667777777 66776643 2334455567777777777664
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=2.3e-06 Score=78.35 Aligned_cols=20 Identities=5% Similarity=-0.227 Sum_probs=13.1
Q ss_pred CCcccceeeCCC-CCEEEEEc
Q 045209 54 CCTWTGITCLSG-DRVTSLSL 73 (478)
Q Consensus 54 ~c~w~gv~C~~~-~~v~~l~l 73 (478)
.|.|.|+.|+.. .+|+.+..
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEE
T ss_pred HHhcCcEEECCCCCEEEEEEe
Confidence 578999999843 35544433
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=2.2e-06 Score=72.96 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=45.3
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEEeecCc-CCCCCchhhcCC----CCCCEEEeeccc-CCCCCCccCCCCCC
Q 045209 121 PELKYIYIENNKLSGQIPANIGKLTQLEALSFSGNR-FTGPIPSSISQL----TQLTQLKLGQNF-LTGAIPNGISQLKN 194 (478)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 194 (478)
.+|++||++++.++..--..+..+++|++|+|++|. +++.--..+..+ ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776664444455666667777776664 543222334433 246666666653 44332233445555
Q ss_pred CCEEEccCCC
Q 045209 195 LTYLDLQHNQ 204 (478)
Q Consensus 195 L~~L~l~~n~ 204 (478)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 5555555543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=6e-06 Score=75.61 Aligned_cols=66 Identities=26% Similarity=0.308 Sum_probs=36.5
Q ss_pred CCCCCCEEEeecccCCC--CCCccCCCCCCCCEEEccCCCCCCCCchhhhCCC--CCcEEEcccCcCccccc
Q 045209 167 QLTQLTQLKLGQNFLTG--AIPNGISQLKNLTYLDLQHNQLSGAIPDIFSSLK--KLLFLTLSFNKFSGNIP 234 (478)
Q Consensus 167 ~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~ 234 (478)
++++|++|+|++|++++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 45666666666666664 2333444566666666666666543 2222222 66666666666655443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=4.7e-06 Score=70.90 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=42.0
Q ss_pred CCCEEEccCCCCCCCCchhhhCCCCCcEEEcccCc-CccccchHHHhc---cccCcEEEccCcc-CCCCCCcccCCCCCC
Q 045209 194 NLTYLDLQHNQLSGAIPDIFSSLKKLLFLTLSFNK-FSGNIPTSIASL---APQLQYLKLGHNV-LSGKVPDFLGKFHSL 268 (478)
Q Consensus 194 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~---~~~L~~L~L~~n~-l~~~~~~~l~~l~~L 268 (478)
.|++|+++++.++..--..+..+++|++|+|++|. +++..-..+... .++|++|++++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 35555555555443333344555555555555553 443333333321 1356666666653 554333445556666
Q ss_pred CEEeccCCc
Q 045209 269 DTLDLSWNQ 277 (478)
Q Consensus 269 ~~L~L~~n~ 277 (478)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=0.00044 Score=59.84 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCCCCCEEEeecc-cCCCC----CCccCCCCCCCCEEEccCCCCCCC----CchhhhCCCCCcEEEcccCcCc
Q 045209 167 QLTQLTQLKLGQN-FLTGA----IPNGISQLKNLTYLDLQHNQLSGA----IPDIFSSLKKLLFLTLSFNKFS 230 (478)
Q Consensus 167 ~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 230 (478)
+-+.|++|+|++| .+... +.+.+..-+.|++|+|++|.+... +.+.+..-+.|++|+|++|.|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3455666666553 44321 223344445555555555555422 2223333344555555555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.90 E-value=0.00039 Score=60.18 Aligned_cols=111 Identities=11% Similarity=0.176 Sum_probs=49.5
Q ss_pred CCCCCCCEEEccCC-CCCCC----CchhhhCCCCCcEEEcccCcCccccchHHHhc---cccCcEEEccCccCCCCC---
Q 045209 190 SQLKNLTYLDLQHN-QLSGA----IPDIFSSLKKLLFLTLSFNKFSGNIPTSIASL---APQLQYLKLGHNVLSGKV--- 258 (478)
Q Consensus 190 ~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~--- 258 (478)
.+-+.|++|++++| .+... +.+.+..-+.|+.|+|++|.+.+..-..+... -..|++|+|++|.|....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33445555665553 44321 22334444555666666555543222222111 125556666665554321
Q ss_pred -CcccCCCCCCCEEeccCC---cCCc----cchhhhcCCCCCCEEeccCC
Q 045209 259 -PDFLGKFHSLDTLDLSWN---QFSG----TLPKSFSNLTKIFNLNLAYN 300 (478)
Q Consensus 259 -~~~l~~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~L~~n 300 (478)
.+.+..-+.|++|+|+++ .+.. .+...+..-+.|+.|+++.|
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 122334445666666543 2221 12233444555566655544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.90 E-value=0.018 Score=46.26 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=22.6
Q ss_pred CcEEEccCCcccccCccccccCCCCcEEECcCCcCc
Q 045209 364 YDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLK 399 (478)
Q Consensus 364 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 399 (478)
+++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 456666666666666666666666666666666554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.78 E-value=0.02 Score=45.89 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=17.5
Q ss_pred CCCEEeccCCcCCccchhhhcCCCCCCEEeccCCcC
Q 045209 267 SLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSL 302 (478)
Q Consensus 267 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 302 (478)
+|++|+|++|+++...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555533334444455555555554443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.97 E-value=70 Score=23.54 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=18.4
Q ss_pred ccccCCCCCeeecCCCCCcccccCccCCCCCCCCEEEccC
Q 045209 91 SLVKVKNLGGIYLQDLGNISGNFPDFISGLPELKYIYIEN 130 (478)
Q Consensus 91 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 130 (478)
+|.++..|+.+.+.. .++..-..+|.+|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 455555555555544 23333334455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.27 E-value=89 Score=22.94 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=15.5
Q ss_pred ccCCCCCCCEEEeecCcCCCCCchhhcCCCCCCEEEee
Q 045209 140 NIGKLTQLEALSFSGNRFTGPIPSSISQLTQLTQLKLG 177 (478)
Q Consensus 140 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 177 (478)
.|.++..|+.+.+..+ ++.+-...|.++.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3444444444444332 222223344444445444443
Done!