BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045210
(873 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 197/680 (28%), Positives = 299/680 (43%), Gaps = 88/680 (12%)
Query: 207 VDLSKTS-DGPLIT-NSLHSLETLRF---SGCLLHHISPLSFA-NFSSLVTLDISDNQFA 260
+DLS+ S GP+ T SL S L+F S L +S +SL LD+S N +
Sbjct: 102 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 161
Query: 261 DSSIVNQVL--GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNK 318
+++V VL G L L +S N G V + +L+ LD+S N+FS+ +P +
Sbjct: 162 GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGD 218
Query: 319 FIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
L++L +S N+L G ++ T +K L++S N+ IP L+ L+ ++L+ N
Sbjct: 219 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 276
Query: 379 KLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP 438
K + EI F + A + L LDLS N +G + G+ L+SL LS NN SG +P
Sbjct: 277 KFTGEIPD----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 439 L-SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSP-SWTPPFQ 496
+ +L ++ L+ LD+S N +G L E+ L+ D S N+ ++ P
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 497 LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
LQ + L + + P L + + L+ L LS + +S TIP L SLS++ L L N +
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNML 451
Query: 557 FGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNNSM 616
G+IP E+
Sbjct: 452 EGEIPQ------------------------------------------------ELMYVK 463
Query: 617 RLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRF 676
L+ L L N L+GEIP N + L ++ L N TG +P +G L +L IL L N F
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 677 SGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPP----- 731
SG IP L +C L D++ N F G IP + ++ SG I + A + + +
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ-SGKIAANFIAGKRYVYIKNDGMKK 582
Query: 732 ---------ELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDK--FFEDALXX 780
E G+ S ++ LS+ N + R G + + F D
Sbjct: 583 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY---GGHTSPTFDNNGSMMFLDMSYN 639
Query: 781 XXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGA 840
L +L+L N SG IP +V +L GL L LS N GRIP M A
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 841 MKSVEALDFSSNRLQGEIPK 860
+ + +D S+N L G IP+
Sbjct: 700 LTMLTEIDLSNNNLSGPIPE 719
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 198/684 (28%), Positives = 269/684 (39%), Gaps = 155/684 (22%)
Query: 279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW--FNKFIDLEYLSLSYNELQ--G 334
LS ++ G+V + S SL LDLSRN S V L++L++S N L G
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 335 SIPGSLGNLTSIKSLDLSFNRLESK------IPRAFKRLRHLRSVNLSGNKLSQEIS--- 385
+ G L L S++ LDLS N + + L+HL +SGNK+S ++
Sbjct: 140 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSR 195
Query: 386 ----QVLDMFSACAS---------NVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNN 432
+ LD+ S S + L+ LD+S N L G + I L L++S N
Sbjct: 196 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 433 ISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWT 492
G IP L SL+YL ++ N G + + L G D SGN V
Sbjct: 256 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV------ 307
Query: 493 PPF------QLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQI 546
PPF S+ F G LL L LDLS + S +P+ L + +
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 547 NYLNLSYNQIFGQI-PDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLS 605
L+LS N G I P+L
Sbjct: 368 LTLDLSSNNFSGPILPNL------------------------------------------ 385
Query: 606 RFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLS- 664
C N+ LQ L L NN +G+IP N S L LHL N +G +P+SLG+LS
Sbjct: 386 ---CQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 665 -----------------------SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFV 701
+L+ L L N +G+IP L NCT L +S N
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 702 GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCI---- 757
G IP WIG RL + +L L N F G P EL SL LDL++N G IP +
Sbjct: 501 GEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Query: 758 -----NNLA----------GMAKE------VLEVDKFFEDALXXXXXXXXXXXXXXXX-- 794
N +A GM KE +LE + L
Sbjct: 560 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 795 ----------XLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSV 844
+ LD+S N SG IP ++ ++ L L L HN SG IP +G ++ +
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 845 EALDFSSNRLQGEIPKNMVNLEFL 868
LD SSN+L G IP+ M L L
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTML 703
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 194/460 (42%), Gaps = 72/460 (15%)
Query: 423 LDSLDLSFNNISGHIPL--SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
L SLDLS N++SG + SLG S L++L+VS+N L+ + L L D S N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 481 SLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQN--HLIYLDLSNSSISDTIPDR 538
S+ G W+LS L +L +S + IS D
Sbjct: 159 SIS------------------------GANVVGWVLSDGCGELKHLAISGNKISG---DV 191
Query: 539 LVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXX 598
V + +L++S N IP L D + L+
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ---------------------HLDISGN 230
Query: 599 XXXGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658
G SR ++ L++LN+ +N G IP + L +L L EN FTG +P
Sbjct: 231 KLSGDFSR----AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPD 284
Query: 659 SL-GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL 717
L G +L L L GN F G +P +C+ L +S N F G +P ++ G+ +
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 718 LSLRANQFHGFFPPELCGL-ASLKILDLSSNNLTG-VIPRCINNLAGMAKEVLEVDKFFE 775
L L N+F G P L L ASL LDLSSNN +G ++P N +E+ + F
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 776 DALXXXXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIP 835
+ L L LS NY SG IPS + +L L+ LKL N G IP
Sbjct: 405 GKIPPTLSNCSE--------LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 836 VNMGAMKSVEALDFSSNRLQGEIP---KNMVNLEFLEIFN 872
+ +K++E L N L GEIP N NL ++ + N
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 208/500 (41%), Gaps = 104/500 (20%)
Query: 129 SYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQI-GNLSNLQFLDLRPNYLGGLYV 187
S N F G IP L++L YL+++ F G IP + G L LDL N+ G
Sbjct: 252 SSNQFVG-PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 188 EDFGWVXXXXXXXXXXXXGVDLSKTSDGPLITNSLHSLETLR--------FSGCLLHHIS 239
FG S G L ++L + L+ FSG L ++
Sbjct: 309 PFFGSCSLLESL-------ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 240 PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVN-LVFLDLSTNNFQGAVPDAIQNSTSL 298
LS +SL+TLD+S N F+ + N N L L L N F G +P + N + L
Sbjct: 362 NLS----ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 299 QHLDLSRNHFSSSVPD-------------WFNKF-----------IDLEYLSLSYNELQG 334
L LS N+ S ++P W N LE L L +N+L G
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 477
Query: 335 SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSAC 394
IP L N T++ + LS NRL +IP+ RL +
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN------------------------- 512
Query: 395 ASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSL----GQLSS---- 446
L L LSNN+ G + ++G+ ++L LDL+ N +G IP ++ G++++
Sbjct: 513 ----LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 568
Query: 447 -LRYLDVSTNNLNGTLSENHFA-NLTKLVGFDA---------SGNSLVLKVVSPSWTPPF 495
RY+ + +G E H A NL + G + + ++ +V +P F
Sbjct: 569 GKRYVYIKN---DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 496 Q----LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNL 551
+ + +S + P+ + S +L L+L ++ IS +IPD V L +N L+L
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDL 684
Query: 552 SYNQIFGQIPDLNDAAQLET 571
S N++ G+IP A + T
Sbjct: 685 SSNKLDGRIPQAMSALTMLT 704
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 108/428 (25%), Positives = 181/428 (42%), Gaps = 75/428 (17%)
Query: 129 SYNDFQGIQIPRFLGSLE-NLMYLNISRAGFVG-IIPHQIGNLSNLQFLDLRPNYLGGLY 186
S+N+F G ++P L +L +L+ L++S F G I+P+ N N L LY
Sbjct: 348 SFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN---------PKNTLQELY 397
Query: 187 VEDFGWVXXXXXXXXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANF 246
+++ G+ T P ++ L +L S L P S +
Sbjct: 398 LQNNGF-------------------TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 247 SSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRN 306
S L L + N + I +++ + L L L N+ G +P + N T+L + LS N
Sbjct: 439 SKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 307 HFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA-FK 365
+ +P W + +L L LS N G+IP LG+ S+ LDL+ N IP A FK
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 366 RLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGN------ 419
+ + + ++G + + + A N+LE + + L L T N
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 420 -------FKNLDS---LDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANL 469
F N S LD+S+N +SG+IP +G + L L++ N+++G++ + +L
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDL 676
Query: 470 TKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNS 529
L D S N L ++ PQ + + L +DLSN+
Sbjct: 677 RGLNILDLSSNKLDGRI-------------------------PQAMSALTMLTEIDLSNN 711
Query: 530 SISDTIPD 537
++S IP+
Sbjct: 712 NLSGPIPE 719
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 39/190 (20%)
Query: 688 TELRLFDISENEFVGNIPTWIG-ERLSGIILLSLRANQFHGFFPPELCG---LASLKILD 743
L D+S N G + T SG+ L++ +N FP ++ G L SL++LD
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 154
Query: 744 LSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALXXXXXXXXXXXXXXXXXLKVLDLSA 803
LS+N+++G N+ G D LK L +S
Sbjct: 155 LSANSISGA------NVVGWV---------LSDGC---------------GELKHLAISG 184
Query: 804 NYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMV 863
N SG++ V+ V L+ L +S N FS IP +G +++ LD S N+L G+ + +
Sbjct: 185 NKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 241
Query: 864 NLEFLEIFNI 873
L++ NI
Sbjct: 242 TCTELKLLNI 251
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 240 PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNST 296
P + L LD+S N+ D I + L L +DLS NN G +P+ Q T
Sbjct: 670 PDEVGDLRGLNILDLSSNKL-DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 725
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 197/680 (28%), Positives = 299/680 (43%), Gaps = 88/680 (12%)
Query: 207 VDLSKTS-DGPLIT-NSLHSLETLRF---SGCLLHHISPLSFA-NFSSLVTLDISDNQFA 260
+DLS+ S GP+ T SL S L+F S L +S +SL LD+S N +
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164
Query: 261 DSSIVNQVL--GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNK 318
+++V VL G L L +S N G V + +L+ LD+S N+FS+ +P +
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGD 221
Query: 319 FIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
L++L +S N+L G ++ T +K L++S N+ IP L+ L+ ++L+ N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 279
Query: 379 KLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP 438
K + EI F + A + L LDLS N +G + G+ L+SL LS NN SG +P
Sbjct: 280 KFTGEIPD----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 439 L-SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSP-SWTPPFQ 496
+ +L ++ L+ LD+S N +G L E+ L+ D S N+ ++ P
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 497 LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
LQ + L + + P L + + L+ L LS + +S TIP L SLS++ L L N +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNML 454
Query: 557 FGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNNSM 616
G+IP E+
Sbjct: 455 EGEIPQ------------------------------------------------ELMYVK 466
Query: 617 RLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRF 676
L+ L L N L+GEIP N + L ++ L N TG +P +G L +L IL L N F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 677 SGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPP----- 731
SG IP L +C L D++ N F G IP + ++ SG I + A + + +
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ-SGKIAANFIAGKRYVYIKNDGMKK 585
Query: 732 ---------ELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDK--FFEDALXX 780
E G+ S ++ LS+ N + R G + + F D
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY---GGHTSPTFDNNGSMMFLDMSYN 642
Query: 781 XXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGA 840
L +L+L N SG IP +V +L GL L LS N GRIP M A
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 841 MKSVEALDFSSNRLQGEIPK 860
+ + +D S+N L G IP+
Sbjct: 703 LTMLTEIDLSNNNLSGPIPE 722
Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 198/684 (28%), Positives = 269/684 (39%), Gaps = 155/684 (22%)
Query: 279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW--FNKFIDLEYLSLSYNELQ--G 334
LS ++ G+V + S SL LDLSRN S V L++L++S N L G
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 335 SIPGSLGNLTSIKSLDLSFNRLESK------IPRAFKRLRHLRSVNLSGNKLSQEIS--- 385
+ G L L S++ LDLS N + + L+HL +SGNK+S ++
Sbjct: 143 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSR 198
Query: 386 ----QVLDMFSACAS---------NVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNN 432
+ LD+ S S + L+ LD+S N L G + I L L++S N
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 433 ISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWT 492
G IP L SL+YL ++ N G + + L G D SGN V
Sbjct: 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV------ 310
Query: 493 PPF------QLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQI 546
PPF S+ F G LL L LDLS + S +P+ L + +
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 547 NYLNLSYNQIFGQI-PDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLS 605
L+LS N G I P+L
Sbjct: 371 LTLDLSSNNFSGPILPNL------------------------------------------ 388
Query: 606 RFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLS- 664
C N+ LQ L L NN +G+IP N S L LHL N +G +P+SLG+LS
Sbjct: 389 ---CQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 665 -----------------------SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFV 701
+L+ L L N +G+IP L NCT L +S N
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 702 GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCI---- 757
G IP WIG RL + +L L N F G P EL SL LDL++N G IP +
Sbjct: 504 GEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 758 -----NNLA----------GMAKE------VLEVDKFFEDALXXXXXXXXXXXXXXXX-- 794
N +A GM KE +LE + L
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 795 ----------XLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSV 844
+ LD+S N SG IP ++ ++ L L L HN SG IP +G ++ +
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 845 EALDFSSNRLQGEIPKNMVNLEFL 868
LD SSN+L G IP+ M L L
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTML 706
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 194/460 (42%), Gaps = 72/460 (15%)
Query: 423 LDSLDLSFNNISGHIPL--SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480
L SLDLS N++SG + SLG S L++L+VS+N L+ + L L D S N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 481 SLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQN--HLIYLDLSNSSISDTIPDR 538
S+ G W+LS L +L +S + IS D
Sbjct: 162 SIS------------------------GANVVGWVLSDGCGELKHLAISGNKISG---DV 194
Query: 539 LVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXX 598
V + +L++S N IP L D + L+
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ---------------------HLDISGN 233
Query: 599 XXXGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658
G SR ++ L++LN+ +N G IP + L +L L EN FTG +P
Sbjct: 234 KLSGDFSR----AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPD 287
Query: 659 SL-GTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL 717
L G +L L L GN F G +P +C+ L +S N F G +P ++ G+ +
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 718 LSLRANQFHGFFPPELCGL-ASLKILDLSSNNLTG-VIPRCINNLAGMAKEVLEVDKFFE 775
L L N+F G P L L ASL LDLSSNN +G ++P N +E+ + F
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 776 DALXXXXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIP 835
+ L L LS NY SG IPS + +L L+ LKL N G IP
Sbjct: 408 GKIPPTLSNCSE--------LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 836 VNMGAMKSVEALDFSSNRLQGEIP---KNMVNLEFLEIFN 872
+ +K++E L N L GEIP N NL ++ + N
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 208/500 (41%), Gaps = 104/500 (20%)
Query: 129 SYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQI-GNLSNLQFLDLRPNYLGGLYV 187
S N F G IP L++L YL+++ F G IP + G L LDL N+ G
Sbjct: 255 SSNQFVG-PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 188 EDFGWVXXXXXXXXXXXXGVDLSKTSDGPLITNSLHSLETLR--------FSGCLLHHIS 239
FG S G L ++L + L+ FSG L ++
Sbjct: 312 PFFGSCSLLESL-------ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 240 PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVN-LVFLDLSTNNFQGAVPDAIQNSTSL 298
LS +SL+TLD+S N F+ + N N L L L N F G +P + N + L
Sbjct: 365 NLS----ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 299 QHLDLSRNHFSSSVPD-------------WFNKF-----------IDLEYLSLSYNELQG 334
L LS N+ S ++P W N LE L L +N+L G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 335 SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSAC 394
IP L N T++ + LS NRL +IP+ RL +
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN------------------------- 515
Query: 395 ASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSL----GQLSS---- 446
L L LSNN+ G + ++G+ ++L LDL+ N +G IP ++ G++++
Sbjct: 516 ----LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571
Query: 447 -LRYLDVSTNNLNGTLSENHFA-NLTKLVGFDA---------SGNSLVLKVVSPSWTPPF 495
RY+ + +G E H A NL + G + + ++ +V +P F
Sbjct: 572 GKRYVYIKN---DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 496 Q----LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNL 551
+ + +S + P+ + S +L L+L ++ IS +IPD V L +N L+L
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDL 687
Query: 552 SYNQIFGQIPDLNDAAQLET 571
S N++ G+IP A + T
Sbjct: 688 SSNKLDGRIPQAMSALTMLT 707
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 108/428 (25%), Positives = 181/428 (42%), Gaps = 75/428 (17%)
Query: 129 SYNDFQGIQIPRFLGSLE-NLMYLNISRAGFVG-IIPHQIGNLSNLQFLDLRPNYLGGLY 186
S+N+F G ++P L +L +L+ L++S F G I+P+ N N L LY
Sbjct: 351 SFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN---------PKNTLQELY 400
Query: 187 VEDFGWVXXXXXXXXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANF 246
+++ G+ T P ++ L +L S L P S +
Sbjct: 401 LQNNGF-------------------TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 247 SSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRN 306
S L L + N + I +++ + L L L N+ G +P + N T+L + LS N
Sbjct: 442 SKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 307 HFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA-FK 365
+ +P W + +L L LS N G+IP LG+ S+ LDL+ N IP A FK
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 366 RLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGN------ 419
+ + + ++G + + + A N+LE + + L L T N
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 420 -------FKNLDS---LDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANL 469
F N S LD+S+N +SG+IP +G + L L++ N+++G++ + +L
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDL 679
Query: 470 TKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNS 529
L D S N L ++ PQ + + L +DLSN+
Sbjct: 680 RGLNILDLSSNKLDGRI-------------------------PQAMSALTMLTEIDLSNN 714
Query: 530 SISDTIPD 537
++S IP+
Sbjct: 715 NLSGPIPE 722
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 39/190 (20%)
Query: 688 TELRLFDISENEFVGNIPTWIG-ERLSGIILLSLRANQFHGFFPPELCG---LASLKILD 743
L D+S N G + T SG+ L++ +N FP ++ G L SL++LD
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 157
Query: 744 LSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALXXXXXXXXXXXXXXXXXLKVLDLSA 803
LS+N+++G N+ G D LK L +S
Sbjct: 158 LSANSISGA------NVVGWV---------LSDGC---------------GELKHLAISG 187
Query: 804 NYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMV 863
N SG++ V+ V L+ L +S N FS IP +G +++ LD S N+L G+ + +
Sbjct: 188 NKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 864 NLEFLEIFNI 873
L++ NI
Sbjct: 245 TCTELKLLNI 254
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 240 PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNST 296
P + L LD+S N+ D I + L L +DLS NN G +P+ Q T
Sbjct: 673 PDEVGDLRGLNILDLSSNKL-DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 24/233 (10%)
Query: 240 PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ 299
P S AN L L I I + L L +L ++ N GA+PD + +L
Sbjct: 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI-KSLDLSFNRLES 358
LD S N S ++P + +L ++ N + G+IP S G+ + + S+ +S NRL
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 359 KIPRAFKRLRHLRSVNLSGNKL-------------SQEI-----SQVLDMFSACASNVLE 400
KIP F L +L V+LS N L +Q+I S D+ S L
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
LDL NN ++G L + K L SL++SFNN+ G IP Q +L+ DVS
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVS 296
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 140/365 (38%), Gaps = 94/365 (25%)
Query: 35 CIESEREALLSFKQDLEDPSNRLASWNNIGVGDCC--KWYGVVCDNITGHVLELRLRNPS 92
C +++ALL K+DL +P+ L+SW + DCC W GV+CD T
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSW--LPTTDCCNRTWLGVLCDTDT------------ 47
Query: 93 RDDGSPAEYEAYERSKIVGKINPSXXXXXXXXXXXXSYNDFQGIQIPR---FLGSLENLM 149
+ Y + + D G+ +P+ SL NL
Sbjct: 48 ---------QTYRVNNL----------------------DLSGLNLPKPYPIPSSLANLP 76
Query: 150 YLNISRAG----FVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXXXXXXXX 205
YLN G VG IP I L+ L +L + + G + DF
Sbjct: 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDF-------LSQIKTLV 128
Query: 206 GVDLSKTSDGPLITNSLHSLETL---RFSGCLLHHISPLSFANFSSLVT-LDISDNQFAD 261
+D S + + S+ SL L F G + P S+ +FS L T + IS N+
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 262 SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFID 321
+ +NL F+DLS N +G + + Q + L++N + D
Sbjct: 189 K--IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----------FD 236
Query: 322 LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLS 381
L + LS N + LDL NR+ +P+ +L+ L S+N+S N L
Sbjct: 237 LGKVGLSKN---------------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 382 QEISQ 386
EI Q
Sbjct: 282 GEIPQ 286
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 107/273 (39%), Gaps = 46/273 (16%)
Query: 608 LCNEMNNSMRLQVLNLGNNTLSGE--IPDCWMNWSFLFFLHLGE-NDFTGNLPTSLGTLS 664
LC+ + R+ L+L L IP N +L FL++G N+ G +P ++ L+
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 665 SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQ 724
L L++ SG IP L L D S N G +P I L ++ ++ N+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNR 160
Query: 725 FHGFFPPELCGLASL-KILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALXXXXX 783
G P + L + +S N LTG IP NL
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----------------------- 197
Query: 784 XXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHN---FFSGRIPVNMGA 840
L +DLS N G+ + Q + L+ N F G++ G
Sbjct: 198 -----------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV----GL 242
Query: 841 MKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873
K++ LD +NR+ G +P+ + L+FL N+
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 122/289 (42%), Gaps = 62/289 (21%)
Query: 277 LDLSTNNFQGA--VPDAIQNSTSLQHLDLSR-NHFSSSVPDWFNKFIDLEYLSLSYNELQ 333
LDLS N +P ++ N L L + N+ +P K L YL +++ +
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 334 GSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
G+IP L + ++ +LD S+N L +P + L +L + GN++S
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS------------ 162
Query: 394 CASNVLESLDLSNNTLFGLLTNQIGNFKNL-DSLDLSFNNISGHIPLSLGQLSSLRYLDV 452
G + + G+F L S+ +S N ++G IP + L+ L ++D+
Sbjct: 163 -----------------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204
Query: 453 STNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
S N L G S V F + N+ + + S F L +GLS G
Sbjct: 205 SRNMLEGDAS----------VLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNG---- 248
Query: 513 QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
LDL N+ I T+P L + L ++ LN+S+N + G+IP
Sbjct: 249 -----------LDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP 285
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 31/223 (13%)
Query: 535 IPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXX 594
IP + K L+Q++YL +++ + G IPD +Q++T
Sbjct: 93 IPPAIAK-LTQLHYLYITHTNVSGAIPDF--LSQIKTLVTLDFSY--------------- 134
Query: 595 XXXXXXXGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFF-LHLGENDFT 653
LS L +++ L + N +SG IPD + ++S LF + + N T
Sbjct: 135 -------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 654 GNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNI-PTWIGERL 712
G +P + L+ L + L N G V + + +++N ++ + + L
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 713 SGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPR 755
+G L LR N+ +G P L L L L++S NNL G IP+
Sbjct: 247 NG---LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSS 311
L + N+ D S + + L NL +L L+ N Q T+L+ L L N S
Sbjct: 68 LALGGNKLHDISALKE---LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 312 VPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLR 371
F+K +L YL+L++N+LQ G LT++ LDLS+N+L+S F +L L+
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184
Query: 372 SVNLSGNKLSQEISQVLDMFSA 393
+ L N+L V D ++
Sbjct: 185 DLRLYQNQLKSVPDGVFDRLTS 206
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLS 280
L ++ L G LH IS L ++L L ++ NQ S+ N V L NL L L
Sbjct: 62 LPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLV 117
Query: 281 TNNFQGAVPDAIQNS-TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGS 339
N Q ++PD + + T+L +L+L+ N S F+K +L L LSYN+LQ G
Sbjct: 118 ENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 340 LGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
LT +K L L N+L+S F RL L+ + L N
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 220 NSLHSLETLR---------FSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL- 269
N LH + L+ +G L + F ++L L + +NQ S+ + V
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL--QSLPDGVFD 130
Query: 270 GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSY 329
L NL +L+L+ N Q T+L LDLS N S F+K L+ L L
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 330 NELQGSIPGSLGNLTSIKSLDLSFNRLESKIP 361
N+L+ G LTS++ + L N + P
Sbjct: 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
++ YL+L N+L +L LT++ L L+ N+L+S F +L +L+ + L N+L
Sbjct: 64 NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 381 SQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS 440
V D + L L+L++N L L NL LDLS+N +
Sbjct: 122 QSLPDGVFDKLTN-----LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 441 LGQLSSLRYLDVSTNNLNGTLSENHFANLTKL 472
+L+ L+ L + N L ++ + F LT L
Sbjct: 177 FDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSL 207
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 8/176 (4%)
Query: 166 IGNLSNLQFL-DLRPNYLGGLYVEDFGWVXXXXXXXXXXXXGVDLSKTSDGPLITNSLHS 224
I ++ +Q+L ++R LGG + D + G L +G + + L +
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNG--VFDKLTN 110
Query: 225 LETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNN 283
L+ L L + F ++L L+++ NQ S+ V L NL LDLS N
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL--QSLPKGVFDKLTNLTELDLSYNQ 168
Query: 284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW-FNKFIDLEYLSLSYNELQGSIPG 338
Q T L+ L L +N SVPD F++ L+Y+ L N + PG
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 159/344 (46%), Gaps = 43/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
L++L + FS L I+PL N + LV + +++NQ AD + + L NL L L
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 116
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
N D ++N T+L L+LS N S + L+ LS S N++ P L
Sbjct: 117 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
NLT+++ LD+S N++ S I +L +L S+ + N++S D+ L+
Sbjct: 171 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 221
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
L L+ N L + T + + NL LDL+ N IS PLS L +L+ L+
Sbjct: 222 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 267
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
L N +N++ L G A N + + +P L+ + + + I P L+
Sbjct: 268 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
+ ++ SN+ +SD + +L+ IN+L+ +NQI P
Sbjct: 328 KLQRLFF--SNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 366
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 25/264 (9%)
Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
L +N NN L+ P N + L + + N P L L++L L L N+ +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 678 GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA 737
P L+N T L ++S N + +I G L+ + LS +NQ P L L
Sbjct: 121 DIDP--LKNLTNLNRLELSSNT-ISDISALSG--LTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 738 SLKILDLSSNNLT--GVIPRCIN--NLAGMAKEVLEVDKF-----FEDALXXXXXXXXXX 788
+L+ LD+SSN ++ V+ + N +L ++ ++ ++
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 233
Query: 789 XXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALD 848
L LDL+ N S P ++ L L LKL N S P + + ++ L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 849 FSSNRLQGEIP-KNMVNLEFLEIF 871
+ N+L+ P N+ NL +L ++
Sbjct: 290 LNENQLEDISPISNLKNLTYLTLY 313
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Query: 235 LHHISPLSFANFSSLVTLDISDN--QFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI 292
L + +F + L L ++DN Q + I + L NL L ++ N Q
Sbjct: 49 LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---LKNLETLWVTDNKLQALPIGVF 105
Query: 293 QNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLS 352
+L L L RN S P F+ L YLSL YNELQ G LTS+K L L
Sbjct: 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165
Query: 353 FNRLESKIPRAFKRLRHLRSVNLSGNKLSQ 382
N+L+ AF +L L+++ L N+L +
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 8/177 (4%)
Query: 207 VDLSKTSDGPLITNSLHSLETLRF---SGCLLHHISPLSFANFSSLVTLDISDN--QFAD 261
+DL L + + H L LR + L + F +L TL ++DN Q
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 262 SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFID 321
+ +Q LVNL L L N + P + T L +L L N S F+K
Sbjct: 102 IGVFDQ---LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 322 LEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
L+ L L N+L+ G+ LT +K+L L N+L+ AF L L+ + L N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 5/184 (2%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
LDL +N A T L+ L L+ N + F + +LE L ++ N+LQ
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 337 PGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACAS 396
G L ++ L L N+L+S PR F L L ++L N+L V D ++
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS--- 158
Query: 397 NVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNN 456
L+ L L NN L + L +L L N + + L L+ L + N
Sbjct: 159 --LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
Query: 457 LNGT 460
+ T
Sbjct: 217 WDCT 220
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 67/163 (41%), Gaps = 14/163 (8%)
Query: 328 SYNELQGSIPGSLGNLTSI--------KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNK 379
S N + S+ S LT+I K LDL N+L S +AF RL LR + L+ NK
Sbjct: 13 SCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72
Query: 380 LSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPL 439
L + + LE+L +++N L L NL L L N + P
Sbjct: 73 LQTLPAGIFKELKN-----LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127
Query: 440 SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482
L+ L YL + N L +L + F LT L N L
Sbjct: 128 VFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL 169
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 6/162 (3%)
Query: 321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
D + L L N+L + LT ++ L L+ N+L++ FK L++L ++ ++ NKL
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 381 SQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS 440
V D L L L N L L + L L L +N +
Sbjct: 98 QALPIGVFDQLVN-----LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152
Query: 441 LGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482
+L+SL+ L + N L + E F LT+L N L
Sbjct: 153 FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 30/156 (19%)
Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460
S+D S+ L + +N + K LDL N +S + +L+ LR L ++ N L T
Sbjct: 20 SVDCSSKKLTAIPSNIPADTK---KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-T 75
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNH 520
L F L L W +LQA+ + F Q + +
Sbjct: 76 LPAGIFKELKNLETL---------------WVTDNKLQALPIGV------FDQLV----N 110
Query: 521 LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
L L L + + ++P R+ SL+++ YL+L YN++
Sbjct: 111 LAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 158/344 (45%), Gaps = 43/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
L++L + FS L I+PL N + LV + +++NQ AD + + L NL L L
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 116
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
N D ++N T+L L+LS N S + L+ LS S N++ P L
Sbjct: 117 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
NLT+++ LD+S N++ S I +L +L S+ + N++S D+ L+
Sbjct: 171 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 221
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
L L+ N L + T + + NL LDL+ N IS PLS L +L+ L+
Sbjct: 222 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 267
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
L N +N++ L G A N + + +P L+ + + + I P L+
Sbjct: 268 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
+ ++ N+ +SD + +L+ IN+L+ +NQI P
Sbjct: 328 KLQRLFF--YNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 366
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 25/264 (9%)
Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
L +N NN L+ P N + L + + N P L L++L L L N+ +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 678 GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA 737
P L+N T L ++S N + +I G L+ + LS +NQ P L L
Sbjct: 121 DIDP--LKNLTNLNRLELSSNT-ISDISALSG--LTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 738 SLKILDLSSNNLT--GVIPRCIN--NLAGMAKEVLEVDKF-----FEDALXXXXXXXXXX 788
+L+ LD+SSN ++ V+ + N +L ++ ++ ++
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 233
Query: 789 XXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALD 848
L LDL+ N S P ++ L L LKL N S P + + ++ L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 849 FSSNRLQGEIP-KNMVNLEFLEIF 871
+ N+L+ P N+ NL +L ++
Sbjct: 290 LNENQLEDISPISNLKNLTYLTLY 313
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 118/270 (43%), Gaps = 34/270 (12%)
Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
AVP+ I T L LDL +N + D F F LE L L+ N + PG+ NL ++
Sbjct: 25 AVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
++L L NRL+ F L +L +++S NK I +LD N L+SL++ +
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK----IVILLDYMFQDLYN-LKSLEVGD 137
Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHF 466
N L + +L+ L L N++ +L L L L + N+N + + F
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSF 196
Query: 467 ANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDL 526
L + LKV+ S P ++ P L N L L +
Sbjct: 197 KRLYR------------LKVLEISHWP------------YLDTMTPNCLYGLN-LTSLSI 231
Query: 527 SNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
++ +++ +P V+ L + +LNLSYN I
Sbjct: 232 THCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS 335
LDL N + D + L+ L+L+ N S+ P FN +L L L N L+
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
Query: 336 IPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
G L+++ LD+S N++ + F+ L +L+S+ + N L IS FS
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISH--RAFSGL- 151
Query: 396 SNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
N LE L L L + T + + L L L NI+ S +L L+ L++S
Sbjct: 152 -NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 39/255 (15%)
Query: 131 NDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDF 190
N + I + F G L NL L+IS V ++ + +L NL+ L++ N D
Sbjct: 90 NRLKLIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN--------DL 140
Query: 191 GWVXXXXXXXXXXXXGVDLSKTSDGPLITNSL---HSLETLRFSGCLLHHISPLSFANFS 247
++ + L K + + T +L H L LR ++ I SF
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200
Query: 248 SLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNH 307
L L+IS + D+ N + GL NL L ++ N AVP +++HL
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLT-AVP-----YLAVRHL------ 247
Query: 308 FSSSVPDWFNKFIDLEYLSLSYNELQGSIPGS-LGNLTSIKSLDLSFNRLESKIPRAFKR 366
+ L +L+LSYN + +I GS L L ++ + L +L P AF+
Sbjct: 248 ------------VYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294
Query: 367 LRHLRSVNLSGNKLS 381
L +LR +N+SGN+L+
Sbjct: 295 LNYLRVLNVSGNQLT 309
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 605 SRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLS 664
RF+ ++L+LG N + D + ++ L L L EN + P + L
Sbjct: 21 KRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80
Query: 665 SLQILHLRGNRFSGKIPV----SLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSL 720
+L+ L LR NR IP+ L N T+L DISEN+ V + ++ + L + L +
Sbjct: 81 NLRTLGLRSNRLK-LIPLGVFTGLSNLTKL---DISENKIVI-LLDYMFQDLYNLKSLEV 135
Query: 721 RANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGM 763
N GL SL+ L L NLT + +++L G+
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 105/257 (40%), Gaps = 27/257 (10%)
Query: 242 SFANFSSLVTLDISDNQFADSSIVNQVL-----GLVNLVFLDLSTNNFQGAVPDAIQNST 296
FA+F L L++++N IV+ V L NL L L +N + +
Sbjct: 51 EFASFPHLEELELNEN------IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104
Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
+L LD+S N + F +L+ L + N+L + L S++ L L L
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Query: 357 ESKIPRAFKRLRH---LRSVNLSGNKLSQEISQVLDMFSACASNVLESLD-LSNNTLFGL 412
S A L LR +L+ N + + L + LD ++ N L+GL
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224
Query: 413 LTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKL 472
NL SL ++ N++ L++ L LR+L++S N ++ T+ + L +L
Sbjct: 225 ---------NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRL 274
Query: 473 VGFDASGNSLVLKVVSP 489
G L VV P
Sbjct: 275 QEIQLVGGQLA--VVEP 289
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 120/301 (39%), Gaps = 20/301 (6%)
Query: 220 NSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLD 278
N+L +L TL L I F S+L LDIS+N+ +++ + L NL L+
Sbjct: 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV--ILLDYMFQDLYNLKSLE 134
Query: 279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPG 338
+ N+ A SL+ L L + + +S + + L L L + +
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194
Query: 339 SLGNLTSIKSLDLS-FNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASN 397
S L +K L++S + L++ P L +NL+ ++ + +
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNC------LYGLNLTSLSITHCNLTAVPYLAVRHLV 248
Query: 398 VLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL 457
L L+LS N + + + + L + L ++ P + L+ LR L+VS N L
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 458 NGTLSENHFANLTKLVGFDASGNSL-----VLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512
TL E+ F ++ L N L +L V W F Q ++ P+F
Sbjct: 309 T-TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT----PEFV 363
Query: 513 Q 513
Q
Sbjct: 364 Q 364
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 43/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
L++L + FS L I+PL N + LV + +++NQ AD + + L NL L L
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 116
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
N D ++N T+L L+LS N S + L+ L+ S N++ P L
Sbjct: 117 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LA 170
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
NLT+++ LD+S N++ S I +L +L S+ + N++S D+ L+
Sbjct: 171 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 221
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
L L+ N L + T + + NL LDL+ N IS PLS L +L+ L+
Sbjct: 222 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 267
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
L N +N++ L G A N + + +P L+ + + + I P L+
Sbjct: 268 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
+ ++ N+ +SD + +L+ IN+L+ +NQI P
Sbjct: 328 KLQRLFF--YNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 366
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 25/264 (9%)
Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
L +N NN L+ P N + L + + N P L L++L L L N+ +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 678 GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA 737
P L+N T L ++S N + +I G L+ + L+ +NQ P L L
Sbjct: 121 DIDP--LKNLTNLNRLELSSNT-ISDISALSG--LTSLQQLNFSSNQVTDLKP--LANLT 173
Query: 738 SLKILDLSSNNLT--GVIPRCIN--NLAGMAKEVLEVDKF-----FEDALXXXXXXXXXX 788
+L+ LD+SSN ++ V+ + N +L ++ ++ ++
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 233
Query: 789 XXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALD 848
L LDL+ N S P ++ L L LKL N S P + + ++ L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 849 FSSNRLQGEIP-KNMVNLEFLEIF 871
+ N+L+ P N+ NL +L ++
Sbjct: 290 LNENQLEDISPISNLKNLTYLTLY 313
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 141/570 (24%), Positives = 220/570 (38%), Gaps = 110/570 (19%)
Query: 235 LHHISPLSFANFSSLVTLDISDNQFAD----------------------SSIVNQVLGL- 271
L + P +F +S L LD N + S I +Q
Sbjct: 37 LRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFC 96
Query: 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSS--------VPDWFNKFIDLE 323
NL LDL +N+ + +N +L LDLS N SS+ +
Sbjct: 97 TNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNK 156
Query: 324 YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQE 383
L+L EL+ LGN +S++ LDLS N L+ P F+ + L ++ L+ +L+
Sbjct: 157 ILALRSEELEF-----LGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPH 210
Query: 384 ISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFK--NLDSLDLSFNNISGHIPLSL 441
+++ L ++ +++L L+NN L + K NL LDLS+NN+ S
Sbjct: 211 LTEKLCW--ELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSF 268
Query: 442 GQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIG 501
L SLRYL + NN+ LS F L+ L L LK F Q++
Sbjct: 269 SYLPSLRYLSLEYNNIQ-RLSPRSFYGLSNL-------RYLSLKRA-------FTKQSVS 313
Query: 502 LSSCFIGPQFP-QWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQI 560
L+S F QWL +L YL++ +++I T + L + YL+LS + F +
Sbjct: 314 LASHPNIDDFSFQWL---KYLEYLNMDDNNIPSTKSNTFT-GLVSLKYLSLS--KTFTSL 367
Query: 561 PDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNNSMRLQV 620
L + GT S +L++
Sbjct: 368 QTLTNET----------FVSLAHSPLLTLNLTKNHISKIANGTFSWL--------GQLRI 409
Query: 621 LNLGNNTLSGEIP-DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGK 679
L+LG N + ++ W +F ++L N + +S + SLQ L LR
Sbjct: 410 LDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRR------ 463
Query: 680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASL 739
V+L+N DIS + F L + +L L N L GL +L
Sbjct: 464 --VALKNV------DISPSPF---------RPLRNLTILDLSNNNIANINEDLLEGLENL 506
Query: 740 KILDLSSNNLTGVIPRC-----INNLAGMA 764
+ILD NNL + R +N L G++
Sbjct: 507 EILDFQHNNLARLWKRANPGGPVNFLKGLS 536
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 132/344 (38%), Gaps = 47/344 (13%)
Query: 130 YNDFQGIQIPRFLGSLENLMYLNISRA---GFVGIIPHQIGNLSNLQFLDLRPNYLGGLY 186
YN+ Q + PR L NL YL++ RA V + H N+ + F L+ YL L
Sbjct: 281 YNNIQRLS-PRSFYGLSNLRYLSLKRAFTKQSVSLASH--PNIDDFSFQWLK--YLEYLN 335
Query: 187 VED--FGWVXXXXXXXXXXXXGVDLSKT-------SDGPLITNSLHSLETLRFSGCLLHH 237
++D + LSKT ++ ++ + L TL + +
Sbjct: 336 MDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISK 395
Query: 238 ISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTS 297
I+ +F+ L LD+ N+ + GL N+ + LS N + + S
Sbjct: 396 IANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPS 455
Query: 298 LQHLDLSRNHFSSS--VPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
LQ L L R + P F +L L LS N + L L +++ LD N
Sbjct: 456 LQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNN 515
Query: 356 LESKIPRA--------FKRLRHLRSVNLSGNKLSQ----------EISQV---------L 388
L RA K L HL +NL N L + E+ + L
Sbjct: 516 LARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKL 575
Query: 389 DMFSACASNVLESLDLSNNTLFGLLTNQIG-NFKNLDSLDLSFN 431
+ F L SL+L N + + + G F+NL+SLD+ FN
Sbjct: 576 EPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFN 619
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%)
Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
N+ L+L+ N + P + L LD N S P+ L+ L+L +NEL
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLS 381
+ T++ LDL N + FK ++L ++LS N LS
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSS 311
L + N+ D S + + L NL +L L+ N Q T+L+ L L N S
Sbjct: 68 LALGGNKLHDISALKE---LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 312 VPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLR 371
F+K +L YL L +N+LQ G LT++ LDL N+L+S F +L L+
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLK 184
Query: 372 SVNLSGNKLSQEISQVLDMFSA 393
++L+ N+L V D ++
Sbjct: 185 QLSLNDNQLKSVPDGVFDRLTS 206
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 77/169 (45%), Gaps = 7/169 (4%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLS 280
L ++ L G LH IS L ++L L ++ NQ S+ N V L NL L L
Sbjct: 62 LPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLV 117
Query: 281 TNNFQGAVPDAIQNS-TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGS 339
N Q ++PD + + T+L +L L N S F+K +L L L N+LQ G
Sbjct: 118 ENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGV 176
Query: 340 LGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVL 388
LT +K L L+ N+L+S F RL L + L N S +L
Sbjct: 177 FDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDIL 225
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 316 FNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNL 375
+ +L YL L+ N+LQ G LT++K L L N+L+S F +L +L + L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 376 SGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG 435
N+L V D + L LDL NN L L L L L+ N +
Sbjct: 141 YHNQLQSLPKGVFDKLTN-----LTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 436 HIPLSLGQLSSLRYL 450
+L+SL ++
Sbjct: 196 VPDGVFDRLTSLTHI 210
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 275 VFLDLSTNNFQGAVPDAIQNS-TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ 333
+LDL TN+ + ++P+ + + TSL L L N S FNK L YL+LS N+LQ
Sbjct: 31 TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 334 GSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
G LT +K L L+ N+L+S F +L L+ + L N+L V D ++
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNS-TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSY 329
L +L L L N Q ++P+ + N TSL +L+LS N S F+K L+ L+L+
Sbjct: 51 LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 330 NELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
N+LQ G LT +K L L N+L+S F RL L+ + L N
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 220 NSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLD 278
+ L SL L G L + F +SL L++S NQ S+ N V L L L
Sbjct: 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL--QSLPNGVFDKLTQLKELA 106
Query: 279 LSTNNFQGAVPDAIQNS-TSLQHLDLSRNHFSSSVPDW-FNKFIDLEYLSLSYNELQGSI 336
L+TN Q ++PD + + T L+ L L +N SVPD F++ L+Y+ L N +
Sbjct: 107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTC 164
Query: 337 PG 338
PG
Sbjct: 165 PG 166
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 324 YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQE 383
YL L N L+ G LTS+ L L N+L+S F +L L +NLS N+L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 384 ISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQ 443
+ V D + L+ L L+ N L L L L L N + +
Sbjct: 92 PNGVFDKLTQ-----LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 444 LSSLRYL 450
L+SL+Y+
Sbjct: 147 LTSLQYI 153
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 44/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
L++L + FS L I+PL N + LV + +++NQ AD + + L NL L L
Sbjct: 66 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 120
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
N D ++N T+L L+LS N S + L+ LS N++ P L
Sbjct: 121 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LA 173
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
NLT+++ LD+S N++ S I +L +L S+ + N++S D+ L+
Sbjct: 174 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 224
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
L L+ N L + T + + NL LDL+ N IS PLS L +L+ L+
Sbjct: 225 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 270
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
L N +N++ L G A N + + +P L+ + + + I P L+
Sbjct: 271 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 330
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
+ ++ +N+ +SD + +L+ IN+L+ +NQI P
Sbjct: 331 KLQRLFF--ANNKVSDV---SSLANLTNINWLSAGHNQISDLTP 369
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 26/264 (9%)
Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
L +N NN L+ P N + L + + N P L L++L L L N+ +
Sbjct: 69 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 124
Query: 678 GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA 737
P L+N T L ++S N + +I G L+ + LS NQ P L L
Sbjct: 125 DIDP--LKNLTNLNRLELSSNT-ISDISALSG--LTSLQQLSF-GNQVTDLKP--LANLT 176
Query: 738 SLKILDLSSNNLT--GVIPRCIN--NLAGMAKEVLEVDKF-----FEDALXXXXXXXXXX 788
+L+ LD+SSN ++ V+ + N +L ++ ++ ++
Sbjct: 177 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 236
Query: 789 XXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALD 848
L LDL+ N S P ++ L L LKL N S P + + ++ L+
Sbjct: 237 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 292
Query: 849 FSSNRLQGEIP-KNMVNLEFLEIF 871
+ N+L+ P N+ NL +L ++
Sbjct: 293 LNENQLEDISPISNLKNLTYLTLY 316
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 110/252 (43%), Gaps = 14/252 (5%)
Query: 257 NQFADSSIVNQVLGLV------NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS 310
NQF+ V + L V N L+L N Q ++ ++ L+ L LSRNH +
Sbjct: 43 NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 311 SVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHL 370
FN +L L L N L G+ L+ +K L L N +ES AF R+ L
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162
Query: 371 RSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSF 430
R ++L K IS+ F ++ +L + N LT I LD LDLS
Sbjct: 163 RRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLREIPNLTPLI----KLDELDLSG 216
Query: 431 NNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPS 490
N++S P S L L+ L + + + + N F NL LV + + N+L L +
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL-LPHDL 274
Query: 491 WTPPFQLQAIGL 502
+TP L+ I L
Sbjct: 275 FTPLHHLERIHL 286
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Query: 238 ISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTS 297
I +F SL LD+ + + GL NL +L+L+ N + +P+ +
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIK 208
Query: 298 LQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE 357
L LDLS NH S+ P F + L+ L + +++Q + NL S+ ++L+ N L
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Query: 358 SKIPRAFKRLRHLRSVNLSGN 378
F L HL ++L N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQV-LGLVNLVFLDLS 280
L LE L+ S + I +F ++L TL++ DN+ ++I N + L L L L
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLR 144
Query: 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPD-WFNKFIDLEYLSLSYNELQGSIPGS 339
N + A SL+ LDL S + + F +L YL+L+ L+ IP +
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202
Query: 340 LGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSV 373
L L + LDLS N L + P +F+ L HL+ +
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 9/213 (4%)
Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD 403
T+ + L+L N+++ +FK LRHL + LS N + + + F+ A+ L +L+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR---TIEIGAFNGLAN--LNTLE 118
Query: 404 LSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSE 463
L +N L + L L L N I + ++ SLR LD+ +SE
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178
Query: 464 NHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIY 523
F L+ L + + +L P+ TP +L + LS + P HL
Sbjct: 179 GAFEGLSNLRYLNLAMCNL---REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235
Query: 524 LDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
L + S I I +L + +NL++N +
Sbjct: 236 LWMIQSQI-QVIERNAFDNLQSLVEINLAHNNL 267
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 44/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
L++L + FS L I+PL N + LV + +++NQ AD + + L NL L L
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 116
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
N D ++N T+L L+LS N S + L+ L+ N++ P L
Sbjct: 117 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LA 169
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
NLT+++ LD+S N++ S I +L +L S+ + N++S D+ L+
Sbjct: 170 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 220
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
L L+ N L + T + + NL LDL+ N IS PLS L +L+ L+
Sbjct: 221 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 266
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
L N +N++ L G A N + + +P L+ + + + I P L+
Sbjct: 267 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
+ ++ SN+ +SD + +L+ IN+L+ +NQI P
Sbjct: 327 KLQRLFF--SNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 365
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 111/268 (41%), Gaps = 34/268 (12%)
Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
L +N NN L+ P N + L + + N P L L++L L L N+ +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 678 GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLR----ANQFHGFFPPEL 733
P L+N T L ++S N + +I LSG L SL+ NQ P L
Sbjct: 121 DIDP--LKNLTNLNRLELSSNT-ISDI-----SALSG--LTSLQQLNFGNQVTDLKP--L 168
Query: 734 CGLASLKILDLSSNNLT--GVIPRCIN--NLAGMAKEVLEVDKF-----FEDALXXXXXX 784
L +L+ LD+SSN ++ V+ + N +L ++ ++ ++
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 228
Query: 785 XXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSV 844
L LDL+ N S P ++ L L LKL N S P + + ++
Sbjct: 229 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 284
Query: 845 EALDFSSNRLQGEIP-KNMVNLEFLEIF 871
L+ + N+L+ P N+ NL +L ++
Sbjct: 285 TNLELNENQLEDISPISNLKNLTYLTLY 312
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 157/344 (45%), Gaps = 44/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
L++L + FS L I+PL N + LV + +++NQ AD + + L NL L L
Sbjct: 67 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 121
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
N D ++N T+L L+LS N S + L+ LS N++ P L
Sbjct: 122 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LA 174
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
NLT+++ LD+S N++ S I +L +L S+ + N++S D+ L+
Sbjct: 175 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 225
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
L L+ N L + T + + NL LDL+ N IS PLS L +L+ L+
Sbjct: 226 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 271
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
L N +N++ L G A N + + +P L+ + + + I P L+
Sbjct: 272 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 331
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
+ ++ N+ +SD + +L+ IN+L+ +NQI P
Sbjct: 332 KLQRLFF--YNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 370
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 26/264 (9%)
Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
L +N NN L+ P N + L + + N P L L++L L L N+ +
Sbjct: 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125
Query: 678 GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA 737
P L+N T L ++S N + +I G L+ + LS NQ P L L
Sbjct: 126 DIDP--LKNLTNLNRLELSSNT-ISDISALSG--LTSLQQLSF-GNQVTDLKP--LANLT 177
Query: 738 SLKILDLSSNNLT--GVIPRCIN--NLAGMAKEVLEVDKF-----FEDALXXXXXXXXXX 788
+L+ LD+SSN ++ V+ + N +L ++ ++ ++
Sbjct: 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 237
Query: 789 XXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALD 848
L LDL+ N S P ++ L L LKL N S P + + ++ L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 849 FSSNRLQGEIP-KNMVNLEFLEIF 871
+ N+L+ P N+ NL +L ++
Sbjct: 294 LNENQLEDISPISNLKNLTYLTLY 317
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 33/231 (14%)
Query: 269 LGLVNLVFLDLSTN--NFQGAVPDAIQNSTSLQHLDLSRN-------------------- 306
+ L +L FLDLS N +F+G + +TSL++LDLS N
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 307 -HFSSSVPDWFNKFIDLE---YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL-ESKIP 361
H + F+ F+ L YL +S+ + + G L+S++ L ++ N E+ +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 362 RAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFK 421
F LR+L ++LS +L Q + S+ L+ L++S+N F L T
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-----LQVLNMSHNNFFSLDTFPYKCLN 518
Query: 422 NLDSLDLSFNNISGHIPLSLGQL-SSLRYLDVSTNNLNGTLSENHFANLTK 471
+L LD S N+I L SSL +L+++ N+ T F K
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLD 302
F L LD + S + L L NL++LD+S + + A +SL+ L
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451
Query: 303 LSRNHFSSS-VPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIP 361
++ N F + +PD F + +L +L LS +L+ P + +L+S++ L++S N S
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
Query: 362 RAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
+K L L+ ++ S N + Q L F +
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 38/174 (21%)
Query: 144 SLENLMYLNIS----RAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXX 199
SL NL+YL+IS R F GI LS+L+ L + G + E+F
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMA----GNSFQENFL-------- 462
Query: 200 XXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQF 259
P I L +L L S C L +SP +F + SSL L++S N F
Sbjct: 463 ----------------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 260 ADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN-STSLQHLDLSRNHFSSSV 312
L +L LD S N+ + +Q+ +SL L+L++N F+ +
Sbjct: 507 FSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 618 LQVLNLGNNTLSGE-IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRF 676
L+VL + N+ +PD + L FL L + PT+ +LSSLQ+L++ N F
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 677 SGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF 725
+ L++ D S N + + + S + L+L N F
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQ 293
L H+ SF +F L LD+S + +I + L +L L L+ N Q A
Sbjct: 40 LRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLS 352
+SLQ L + +S L+ L++++N +Q +P NLT+++ LDLS
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 353 FNRLES 358
N+++S
Sbjct: 158 SNKIQS 163
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 112/447 (25%), Positives = 167/447 (37%), Gaps = 81/447 (18%)
Query: 142 LGSLENLMYLNISRAGFVGI-IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXX-XXX 199
+G L+ L LN++ +P NL+NL+ LDL N + +Y D +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 200 XXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQF 259
++ G LH L TLR NF SL +
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKL-TLR--------------NNFDSLNVMKTCIQGL 224
Query: 260 ADSSIVNQVLGLV----NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW 315
A + VLG NL D S +G I+ L +LD ++ + D
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSA--LEGLCNLTIE-EFRLAYLD----YYLDDIIDL 277
Query: 316 FNKFIDLEYLSL-----------SYN------ELQGSIPGSLG--NLTSIKSLDLSFNRL 356
FN ++ SL SYN EL G L S+K L + N
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN-- 335
Query: 357 ESKIPRAFKR--LRHLRSVNLSGNKLSQEISQVLDMFSACASN------VLESLDLSNNT 408
K AF L L ++LS N LS F C S L+ LDLS N
Sbjct: 336 --KGGNAFSEVDLPSLEFLDLSRNGLS---------FKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 409 LFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLG-QLSSLRYLDVSTNN----LNGTLSE 463
+ + +N +G + L+ LD +N+ S+ L +L YLD+S + NG
Sbjct: 385 VITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--- 440
Query: 464 NHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIY 523
F L+ L +GNS + +T L + LS C + P S + L
Sbjct: 441 --FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 524 LDLSNSSIS--DTIPDRLVKSLSQINY 548
L++S+++ DT P + + SL ++Y
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDY 525
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ--- 333
LDLS N + + + LQ LDLSR + + L L L+ N +Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 334 -GSIPG--------------------SLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLR 371
G+ G +G+L ++K L+++ N ++S K+P F L +L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 372 SVNLSGNKL 380
++LS NK+
Sbjct: 153 HLDLSSNKI 161
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL 854
L LDLS P+ +L LQ L +SHN F + S++ LD+S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 45/219 (20%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
L SL+ L F G + + PL AN ++L LDIS N+ +D S++ ++
Sbjct: 150 LTSLQQLNF-GNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKL------------- 193
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
T+L+ L + N S P +L+ LSL+ N+L+ G+L
Sbjct: 194 --------------TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLA 235
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
+LT++ LDL+ N++ + P L L + L N++S ++ L +
Sbjct: 236 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-------NISPLAGLTALTN 286
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS 440
L+L+ N L + + I N KNL L L FNNIS P+S
Sbjct: 287 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVS 323
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 44/344 (12%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
L++L + FS L I+PL N + LV + +++NQ AD + + L NL L L
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFN 116
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
N D ++N T+L L+LS N S + L+ L+ N++ P L
Sbjct: 117 NQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LA 169
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLES 401
NLT+++ LD+S N++ S I +L +L S+ + N++S D+ L+
Sbjct: 170 NLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQIS-------DITPLGILTNLDE 220
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGT 460
L L+ N L + T + + NL LDL+ N IS PLS L +L+ L+
Sbjct: 221 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELK------------ 266
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCF---IGPQFPQWLLS 517
L N +N++ L G A N + + +P L+ + + + I P L+
Sbjct: 267 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP 561
+ ++ N+ +SD + +L+ IN+L+ +NQI P
Sbjct: 327 KLQRLFF--YNNKVSDV---SSLANLTNINWLSAGHNQISDLTP 365
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 111/268 (41%), Gaps = 34/268 (12%)
Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
L +N NN L+ P N + L + + N P L L++L L L N+ +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 678 GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLR----ANQFHGFFPPEL 733
P L+N T L ++S N + +I LSG L SL+ NQ P L
Sbjct: 121 DIDP--LKNLTNLNRLELSSNT-ISDI-----SALSG--LTSLQQLNFGNQVTDLKP--L 168
Query: 734 CGLASLKILDLSSNNLT--GVIPRCIN--NLAGMAKEVLEVDKF-----FEDALXXXXXX 784
L +L+ LD+SSN ++ V+ + N +L ++ ++ ++
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 228
Query: 785 XXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSV 844
L LDL+ N S P ++ L L LKL N S P + + ++
Sbjct: 229 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 284
Query: 845 EALDFSSNRLQGEIP-KNMVNLEFLEIF 871
L+ + N+L+ P N+ NL +L ++
Sbjct: 285 TNLELNENQLEDISPISNLKNLTYLTLY 312
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 21/204 (10%)
Query: 168 NLSNLQFLDLRPN---YLGGLYVEDFGWVXXXXXXXXXXXXGVDLSKTSDGPLITN--SL 222
+L +L+FLDL N + G DFG +DLS + +N L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY---------LDLSFNGVITMSSNFLGL 395
Query: 223 HSLETLRFSGCLLHHISPLS-FANFSSLVTLDISDN--QFADSSIVNQVLGLVNLVFLDL 279
LE L F L +S S F + +L+ LDIS + A + I N GL +L L +
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKM 452
Query: 280 STNNFQ-GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPG 338
+ N+FQ +PD +L LDLS+ P FN L+ L+++ N+L+ G
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512
Query: 339 SLGNLTSIKSLDLSFNRLESKIPR 362
LTS++ + L N + PR
Sbjct: 513 IFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 9/168 (5%)
Query: 228 LRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGA 287
L F GC S F +SL LD+S N ++ + LGL L LD +N +
Sbjct: 359 LSFKGC----CSQSDFGT-TSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 288 VPDAIQNS-TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS-IPGSLGNLTS 345
++ S +L +LD+S H + FN LE L ++ N Q + +P L +
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
+ LDLS +LE P AF L L+ +N++ N+L + D ++
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 113/483 (23%), Positives = 191/483 (39%), Gaps = 55/483 (11%)
Query: 221 SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS 280
S L+ L S C + I ++ + S L TL ++ N S + GL +L L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAV 108
Query: 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSYNELQGSIPGS 339
N I + +L+ L+++ N S +P++F+ +LE+L LS N++Q
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 340 LGNLTSIKSLDLSFNRLESKI----PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
L L + L+LS + + + P AFK +R L + L N S L++ C
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDS------LNVMKTCI 221
Query: 396 SNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
L+ + L+ + N NL+ D S + G L++ + L YLD +
Sbjct: 222 QG------LAGLEVHRLVLGEFRNEGNLEKFDKS--ALEGLCNLTIEEFR-LAYLDYYLD 272
Query: 456 NLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL 515
++ + F LT + F S S+ ++ V ++ F Q + L +C G QFP
Sbjct: 273 DI-----IDLFNCLTNVSSF--SLVSVTIERVK-DFSYNFGWQHLELVNCKFG-QFPTLK 323
Query: 516 LSQ--------------------NHLIYLDLSNSSIS-DTIPDRLVKSLSQINYLNLSYN 554
L L +LDLS + +S + + + YL+LS+N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Query: 555 QIFGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMNN 614
+ + QLE T +R N + N
Sbjct: 384 GVITMSSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 615 SMR-LQVLNLGNNTLSGE-IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLR 672
+ L+VL + N+ +PD + L FL L + PT+ +LSSLQ+L++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 673 GNR 675
N+
Sbjct: 503 SNQ 505
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQ 293
L H+ SF +F L LD+S + +I + L +L L L+ N Q A
Sbjct: 40 LRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLS 352
+SLQ L + +S L+ L++++N +Q +P NLT+++ LDLS
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 353 FNRLES 358
N+++S
Sbjct: 158 SNKIQS 163
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 103/431 (23%), Positives = 163/431 (37%), Gaps = 49/431 (11%)
Query: 142 LGSLENLMYLNISRAGFVGI-IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXX-XXX 199
+G L+ L LN++ +P NL+NL+ LDL N + +Y D +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 200 XXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQF 259
++ G LH L TLR NF SL +
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKL-TLR--------------NNFDSLNVMKTCIQGL 224
Query: 260 ADSSIVNQVLGLV----NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW 315
A + VLG NL D S +G I+ L +LD ++ + D
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSA--LEGLCNLTIE-EFRLAYLD----YYLDDIIDL 277
Query: 316 FNKFIDLEYLSLSYNELQGSIPGSLG-NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVN 374
FN ++ SL ++ S ++ ++ F + + ++ KRL + N
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF--TSN 335
Query: 375 LSGNKLSQEISQVLDMFSACASNVLESLDLSNNTL--FGLLTNQIGNFKNLDSLDLSFNN 432
GN S+ +D+ S LE LDLS N L G + +L LDLSFN
Sbjct: 336 KGGNAFSE-----VDLPS------LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 433 ISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWT 492
+ LG L L +LD +NL + F +L L+ D S ++ + +
Sbjct: 385 VITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGIFN 442
Query: 493 PPFQLQAIGLSSCFIGPQF-PQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNL 551
L+ + ++ F P +L +LDLS + P SLS + LN+
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNM 501
Query: 552 SYNQIFGQIPD 562
+ NQ+ +PD
Sbjct: 502 ASNQL-KSVPD 511
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ--- 333
LDLS N + + + LQ LDLSR + + L L L+ N +Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 334 -GSIPG--------------------SLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLR 371
G+ G +G+L ++K L+++ N ++S K+P F L +L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 372 SVNLSGNKL 380
++LS NK+
Sbjct: 153 HLDLSSNKI 161
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 28/244 (11%)
Query: 241 LSFANFSSLVTLDISDNQFADSSIVNQV-LGLVNLVFLDLSTN-------NFQGAVPDAI 292
S + SL LD+S N + +Q G ++L +LDLS N NF G
Sbjct: 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL----- 419
Query: 293 QNSTSLQHLDLSRNHFSSSVPDWFNKFIDLE---YLSLSYNELQGSIPGSLGNLTSIKSL 349
L+HLD ++ F+ F+ L YL +S+ + + G L+S++ L
Sbjct: 420 ---EQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474
Query: 350 DLSFNRL-ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNT 408
++ N E+ +P F LR+L ++LS +L Q + S+ L+ L++S+N
Sbjct: 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-----LQVLNMSHNN 529
Query: 409 LFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQL-SSLRYLDVSTNNLNGTLSENHFA 467
F L T +L LD S N+I L SSL +L+++ N+ T F
Sbjct: 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 589
Query: 468 NLTK 471
K
Sbjct: 590 QWIK 593
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 38/174 (21%)
Query: 144 SLENLMYLNIS----RAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXX 199
SL NL+YL+IS R F GI LS+L+ L + G + E+F
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMA----GNSFQENFL-------- 486
Query: 200 XXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQF 259
P I L +L L S C L +SP +F + SSL L++S N F
Sbjct: 487 ----------------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 260 ADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN-STSLQHLDLSRNHFSSSV 312
L +L LD S N+ + +Q+ +SL L+L++N F+ +
Sbjct: 531 FSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 126/534 (23%), Positives = 210/534 (39%), Gaps = 57/534 (10%)
Query: 221 SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS 280
S L+ L S C + I ++ + S L TL ++ N S + GL +L L
Sbjct: 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAV 132
Query: 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSYNELQGSIPGS 339
N I + +L+ L+++ N S +P++F+ +LE+L LS N++Q
Sbjct: 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192
Query: 340 LGNLTSIKSLDLSFNRLESKI----PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
L L + L+LS + + + P AFK +R L + L N S L++ C
Sbjct: 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDS------LNVMKTCI 245
Query: 396 SNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
L+ + L+ + N NL+ D S + G L++ + L YLD
Sbjct: 246 QG------LAGLEVHRLVLGEFRNEGNLEKFDKS--ALEGLCNLTIEEFR-LAYLDYY-- 294
Query: 456 NLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWL 515
L+G + + F LT + F S S+ ++ V ++ F Q + L +C G QFP
Sbjct: 295 -LDGII--DLFNCLTNVSSF--SLVSVTIERVK-DFSYNFGWQHLELVNCKFG-QFPTLK 347
Query: 516 LSQ--------------------NHLIYLDLSNSSIS--DTIPDRLVKSLSQINYLNLSY 553
L L +LDLS + +S ++S + YL+LS+
Sbjct: 348 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSF 406
Query: 554 NQIFGQIPDLNDAAQLETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLSRFLCNEMN 613
N + + QLE T +R N +
Sbjct: 407 NGVITMSSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465
Query: 614 NSMR-LQVLNLGNNTLSGE-IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHL 671
N + L+VL + N+ +PD + L FL L + PT+ +LSSLQ+L++
Sbjct: 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 672 RGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF 725
N F + L++ D S N + + + S + L+L N F
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQ 293
L H+ SF +F L LD+S + +I + L +L L L+ N Q A
Sbjct: 64 LRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLS 352
+SLQ L + +S L+ L++++N +Q +P NLT+++ LDLS
Sbjct: 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181
Query: 353 FNRLES 358
N+++S
Sbjct: 182 SNKIQS 187
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 112/447 (25%), Positives = 167/447 (37%), Gaps = 81/447 (18%)
Query: 142 LGSLENLMYLNISRAGFVGI-IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXX-XXX 199
+G L+ L LN++ +P NL+NL+ LDL N + +Y D +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203
Query: 200 XXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQF 259
++ G LH L TLR NF SL +
Sbjct: 204 LSLDLSLNPMNFIQPGAFKEIRLHKL-TLR--------------NNFDSLNVMKTCIQGL 248
Query: 260 ADSSIVNQVLGLV----NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW 315
A + VLG NL D S +G I+ L +LD ++ + D
Sbjct: 249 AGLEVHRLVLGEFRNEGNLEKFDKSA--LEGLCNLTIE-EFRLAYLD----YYLDGIIDL 301
Query: 316 FNKFIDLEYLSL-----------SYN------ELQGSIPGSLG--NLTSIKSLDLSFNRL 356
FN ++ SL SYN EL G L S+K L + N
Sbjct: 302 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN-- 359
Query: 357 ESKIPRAFKR--LRHLRSVNLSGNKLSQEISQVLDMFSACASN------VLESLDLSNNT 408
K AF L L ++LS N LS F C S L+ LDLS N
Sbjct: 360 --KGGNAFSEVDLPSLEFLDLSRNGLS---------FKGCCSQSDFGTISLKYLDLSFNG 408
Query: 409 LFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLG-QLSSLRYLDVSTNN----LNGTLSE 463
+ + +N +G + L+ LD +N+ S+ L +L YLD+S + NG
Sbjct: 409 VITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--- 464
Query: 464 NHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIY 523
F L+ L +GNS + +T L + LS C + P S + L
Sbjct: 465 --FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 524 LDLSNSSIS--DTIPDRLVKSLSQINY 548
L++S+++ DT P + + SL ++Y
Sbjct: 523 LNMSHNNFFSLDTFPYKCLNSLQVLDY 549
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ--- 333
LDLS N + + + LQ LDLSR + + L L L+ N +Q
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 334 -GSIPG--------------------SLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLR 371
G+ G +G+L ++K L+++ N ++S K+P F L +L
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176
Query: 372 SVNLSGNKL 380
++LS NK+
Sbjct: 177 HLDLSSNKI 185
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL 854
L LDLS P+ +L LQ L +SHN F + S++ LD+S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Query: 226 ETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ 285
E L L +S +F + L L++ NQ S L L L L+ N
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLA 96
Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
+ T L L L N S F++ L+ L L+ N+LQ G+ LT+
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVL 388
+++L LS N+L+S AF RL L+++ L GN+ ++L
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
+VP I T + LDL ++ F L +L+L YN+LQ G +LT +
Sbjct: 28 SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
+L L+ N+L S F L L + L GN+L S V D + L+ L L+
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-----LKELRLNT 140
Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNI 433
N L + NL +L LS N +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%)
Query: 270 GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSY 329
GL L +L+L N Q + T L L L+ N +S F+ L+ L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 330 NELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
N+L+ G LT +K L L+ N+L+S AF +L +L++++LS N+L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Query: 226 ETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ 285
E L L +S +F + L L++ NQ S L L L L+ N
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLA 96
Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
+ T L L L N S F++ L+ L L+ N+LQ G+ LT+
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNK 379
+++L LS N+L+S AF RL L+++ L GN+
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
+VP I T + LDL ++ F L +L+L YN+LQ G +LT +
Sbjct: 28 SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSN 406
+L L+ N+L S F L L + L GN+L S V D + L+ L L+
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-----LKELRLNT 140
Query: 407 NTLFGLLTNQIGNFKNLDSLDLSFNNI 433
N L + NL +L LS N +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN 294
L +S F + + L TL +++NQ A S + L L L L N +
Sbjct: 71 LQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
T L+ L L+ N S F+K +L+ LSLS N+LQ G+ L ++++ L N
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 355 RLE 357
+ +
Sbjct: 190 QFD 192
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSI 336
LDL + + T L L+L N + F+ +L L L+ N+L S+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98
Query: 337 P-GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACA 395
P G +LT + L L N+L+S F RL L+ + L+ N+L + D +
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN-- 156
Query: 396 SNVLESLDLSNNTL 409
L++L LS N L
Sbjct: 157 ---LQTLSLSTNQL 167
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 136/324 (41%), Gaps = 40/324 (12%)
Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSV--PDWFNKFIDLEYLSLS 328
L NL LDL ++ PDA Q L L L S +V +F L L LS
Sbjct: 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131
Query: 329 YNELQG-SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRL--RHLRSVNLSGNKLSQEIS 385
N+++ + S G L S+KS+D S N++ + L + L +L+ N L +S
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 386 ----QVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSL 441
+ ++ F + VLE LD+S N G + GNF N S +F+ I H +
Sbjct: 192 VDWGKCMNPFR---NMVLEILDVSGN---GWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 442 G-----------------QLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVL 484
G SS+R+LD+S + +L+ F L L + + N +
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLS-HGFVFSLNSRVFETLKDLKVLNLAYNK-IN 303
Query: 485 KVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLS 544
K+ ++ LQ + LS +G + + Y+DL + I+ I D+ K L
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLE 362
Query: 545 QINYLNLSYNQI-----FGQIPDL 563
++ L+L N + IPD+
Sbjct: 363 KLQTLDLRDNALTTIHFIPSIPDI 386
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 32/241 (13%)
Query: 140 RFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXX 199
R +L++L LN++ I L NLQ L+L N LG LY +F +
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY- 342
Query: 200 XXXXXXGVDLSKTSDGPLITNSLHSLETLRF------SGCLLHHIS--PLSFANFSSLVT 251
+DL K + + LE L+ + +H I P F + + LVT
Sbjct: 343 -------IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395
Query: 252 L----------DISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI-QNSTSLQH 300
L +S+N+ + I+ +L + +L L L+ N F D + SL+
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455
Query: 301 LDLSRNHF-----SSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
L L N + D F L+ L L++N L PG +LT+++ L L+ NR
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
Query: 356 L 356
L
Sbjct: 516 L 516
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 27/240 (11%)
Query: 339 SLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV 398
+ NL +++ LDL +++ P AF+ L HL + L LS VL
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA---VLKDGYFRNLKA 124
Query: 399 LESLDLSNNTLFGL-LTNQIGNFKNLDSLDLSFNNI--SGHIPLSLGQLSSLRYLDVSTN 455
L LDLS N + L L G +L S+D S N I L Q +L + ++ N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 456 NLNGTLS------ENHFANLTKLVGFDASGNSLVLKVV-----SPSWTPPFQL----QAI 500
+L +S N F N+ L D SGN + + + S + F L +
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMV-LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243
Query: 501 GLSSCFIGPQFPQW----LLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQI 556
G F + P L+++ + +LDLS+ + ++ R+ ++L + LNL+YN+I
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKI 302
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 158/330 (47%), Gaps = 50/330 (15%)
Query: 248 SLVTLDISDNQFAD-SSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRN 306
S+ +L++ +++F+D SS Q L LDL+ + +G +P ++ L+ L LS N
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCF--TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVN 308
Query: 307 HFSSSVPDWFNKFIDLEYLSLSYNELQGSIP------GSLGNLTSIKSLDLSFNRLESK- 359
HF D + + SL++ ++G++ G L L ++++LDLS N +E+
Sbjct: 309 HF-----DQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASD 363
Query: 360 -IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTL-FGLLTNQI 417
K L HL+++NLS N+ SQ F C LE LDL+ L +
Sbjct: 364 CCSLQLKNLSHLQTLNLSHNEPLGLQSQA---FKECPQ--LELLDLAFTRLHINAPQSPF 418
Query: 418 GNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL-NGTLSENHFANLTKLVG-- 474
N L L+L++ + L L LR+L++ N+ +GT+++ NL + VG
Sbjct: 419 QNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITK---TNLLQTVGSL 475
Query: 475 ----FDASGNSLVLKVVSPSWTPPFQLQAIGLS----SCFIGPQFPQWLLSQNHL--IYL 524
+ G +L + ++ ++ + LS +C + S +HL IYL
Sbjct: 476 EVLILSSCG---LLSIDQQAFHSLGKMSHVDLSHNSLTC-------DSIDSLSHLKGIYL 525
Query: 525 DLSNSSISDTIPDRLVKSLSQINYLNLSYN 554
+L+ +SI + I RL+ LSQ + +NLS+N
Sbjct: 526 NLAANSI-NIISPRLLPILSQQSTINLSHN 554
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 33/272 (12%)
Query: 238 ISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQ--NS 295
+ +S ANF SL L I N V + L NL LDLS N+ + + ++Q N
Sbjct: 313 LCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGS-LGNLTSIKSLDLSFN 354
+ LQ L+LS N F + LE L L++ L + P S NL ++ L+L++
Sbjct: 373 SHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYC 432
Query: 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT 414
L++ L LR +NL GN ++ S LE L LS+ L +
Sbjct: 433 FLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGS--LEVLILSSCGLLSIDQ 490
Query: 415 NQIGNFKNLDSLDLSFNNIS-------GHI----------------PLSLGQLSSLRYLD 451
+ + +DLS N+++ H+ P L LS ++
Sbjct: 491 QAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTIN 550
Query: 452 VSTNNLNGTLSENHF-----ANLTKLVGFDAS 478
+S N L+ T S HF NL KL G + +
Sbjct: 551 LSHNPLDCTCSNIHFLTWYKENLHKLEGSEET 582
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 45/293 (15%)
Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
S++ L+L + FS F F L+ L L+ L+G +P + L +K L LS N
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 357 ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNV--LESLDLSNNTLFG--L 412
+ + L + + GN + L + C + L++LDLS+N +
Sbjct: 311 DQLCQISAANFPSLTHLYIRGN------VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDC 364
Query: 413 LTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKL 472
+ Q+ N +L +L+LS N G + + L LD++ L+ ++ F NL L
Sbjct: 365 CSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFL 424
Query: 473 -------VGFDASGNSL-----VLKVVS--------PSWTPPFQLQAIG------LSSCF 506
D S L VL+ ++ + T LQ +G LSSC
Sbjct: 425 QVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCG 484
Query: 507 IGPQFPQWLLSQNHLIYLDLSNSSIS-DTIPDRLVKSLSQIN--YLNLSYNQI 556
+ Q S + ++DLS++S++ D+I SLS + YLNL+ N I
Sbjct: 485 LLSIDQQAFHSLGKMSHVDLSHNSLTCDSI-----DSLSHLKGIYLNLAANSI 532
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 796 LKVLDLSANYFSGE--IPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNR 853
L+ LDLS N Q+ NL LQTL LSHN G +E LD + R
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 854 LQGEIPKN-MVNLEFLEIFNI 873
L P++ NL FL++ N+
Sbjct: 409 LHINAPQSPFQNLHFLQVLNL 429
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 23/203 (11%)
Query: 165 QIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXXXXXXXXGVDLSKTS------DGPLI 218
Q+ NLS+LQ L+L N GL + F +DL+ T P
Sbjct: 368 QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLEL--------LDLAFTRLHINAPQSPF- 418
Query: 219 TNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVN----QVLGLVNL 274
+LH L+ L + C L + A L L++ N F D +I Q +G +L
Sbjct: 419 -QNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVG--SL 475
Query: 275 VFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG 334
L LS+ A + + H+DLS N + D + + YL+L+ N +
Sbjct: 476 EVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINI 534
Query: 335 SIPGSLGNLTSIKSLDLSFNRLE 357
P L L+ +++LS N L+
Sbjct: 535 ISPRLLPILSQQSTINLSHNPLD 557
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 15/214 (7%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLG-LVNLVFLDLS 280
L LE L+ S L+ I +F SL TL++ DN+ +++ Q L L L L
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL--TTVPTQAFEYLSKLRELWLR 115
Query: 281 TNNFQGAVPDAIQNSTSLQHLD---LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
N + A SL+ LD L R + S F ++L YL+L L+ IP
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA--FEGLVNLRYLNLGMCNLK-DIP 172
Query: 338 GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASN 397
+L L ++ L+LS NRL+ P +F+ L LR + L +++ D +
Sbjct: 173 -NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS---- 227
Query: 398 VLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFN 431
LE L+LS+N L L + L+ + L+ N
Sbjct: 228 -LEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 8/231 (3%)
Query: 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE 331
VN +L+L N+ Q D ++ L+ L LS+N FN L L L N
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94
Query: 332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
L + L+ ++ L L N +ES AF R+ LR ++L K + IS+ F
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEA--AF 152
Query: 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLD 451
+ +L + N LT + L+ L+LS N + P S L+SLR L
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALV----RLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 452 VSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGL 502
+ + T+ N F +L L + S N+L + + +TP +L+ + L
Sbjct: 209 LMHAQV-ATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLERVHL 257
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLD 302
F L LD + S + L L NL++LD+S + + A +SL+ L
Sbjct: 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156
Query: 303 LSRNHFSSS-VPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIP 361
++ N F + +PD F + +L +L LS +L+ P + +L+S++ L++S N S
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 362 RAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
+K L L+ ++ S N + Q L F
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 33/229 (14%)
Query: 271 LVNLVFLDLSTN--NFQGAVPDAIQNSTSLQHLDLSRN---------------------H 307
L L L LS+N +F+G + +TSL++LDLS N H
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110
Query: 308 FSSSVPDWFNKFIDLE---YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL-ESKIPRA 363
+ F+ F+ L YL +S+ + + G L+S++ L ++ N E+ +P
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
Query: 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNL 423
F LR+L ++LS +L Q + S+ L+ L++S+N F L T +L
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSS-----LQVLNMSHNNFFSLDTFPYKCLNSL 225
Query: 424 DSLDLSFNNISGHIPLSLGQL-SSLRYLDVSTNNLNGTLSENHFANLTK 471
LD S N+I L SSL +L+++ N+ T F K
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 93/235 (39%), Gaps = 53/235 (22%)
Query: 335 SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSAC 394
S+P G +S L+L N+L+S F +L L ++LS N LS F C
Sbjct: 21 SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS---------FKGC 69
Query: 395 ASNV------LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLG-QLSSL 447
S L+ LDLS N + + +N +G + L+ LD +N+ S+ L +L
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 448 RYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL----VLKVVSPSWTPPFQLQAIGLS 503
YLD+S + V F+ N L VLK+ S+ F
Sbjct: 129 IYLDISHTHTR--------------VAFNGIFNGLSSLEVLKMAGNSFQENF-------- 166
Query: 504 SCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFG 558
P +L +LDLS + P SLS + LN+S+N F
Sbjct: 167 -------LPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFS 213
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 108/264 (40%), Gaps = 32/264 (12%)
Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL--QGSIPGSLGNLT 344
+VP I +S + L+L N S F+K L LSLS N L +G S T
Sbjct: 21 SVPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 345 SIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ--EISQVLDM-------FSACA 395
S+K LDLSFN + + + F L L ++ + L Q E S L + S
Sbjct: 79 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 396 SNV-----------LESLDLSNNTL-FGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQ 443
+ V LE L ++ N+ L + +NL LDLS + P +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 444 LSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLS 503
LSSL+ L++S NN +L + L L D S N ++ P L + L+
Sbjct: 198 LSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
Query: 504 ----SCFIGPQ-FPQWLLSQNHLI 522
+C Q F QW+ Q L+
Sbjct: 257 QNDFACTCEHQSFLQWIKDQRQLL 280
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%)
Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLD 302
F SSL L ++ N F ++ + + L NL FLDLS + P A + +SLQ L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 303 LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
+S N+F S + L+ L S N + S L + S
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 38/174 (21%)
Query: 144 SLENLMYLNIS----RAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXX 199
SL NL+YL+IS R F GI LS+L+ L + G + E+F
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMA----GNSFQENFL-------- 167
Query: 200 XXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQF 259
P I L +L L S C L +SP +F + SSL L++S N F
Sbjct: 168 ----------------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 260 ADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQN-STSLQHLDLSRNHFSSSV 312
L +L LD S N+ + +Q+ +SL L+L++N F+ +
Sbjct: 212 FSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 618 LQVLNLGNNTLSGE-IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRF 676
L+VL + N+ +PD + L FL L + PT+ +LSSLQ+L++ N F
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 677 SGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF 725
+ L++ D S N + + + S + L+L N F
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL 854
L LDLS P+ +L LQ L +SHN F + S++ LD+S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 15/214 (7%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLG-LVNLVFLDLS 280
L LE L+ S L+ I +F SL TL++ DN+ +++ Q L L L L
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL--TTVPTQAFEYLSKLRELWLR 115
Query: 281 TNNFQGAVPDAIQNSTSLQHLD---LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
N + A SL+ LD L R + S F ++L YL+L L+ IP
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA--FEGLVNLRYLNLGMCNLK-DIP 172
Query: 338 GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASN 397
+L L ++ L+LS NRL+ P +F+ L LR + L +++ D +
Sbjct: 173 -NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS---- 227
Query: 398 VLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFN 431
LE L+LS+N L L + L+ + L+ N
Sbjct: 228 -LEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 8/231 (3%)
Query: 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE 331
VN +L+L N+ Q D ++ L+ L LS+N FN L L L N
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94
Query: 332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
L + L+ ++ L L N +ES AF R+ LR ++L K + IS+ F
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEA--AF 152
Query: 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLD 451
+ +L + N LT + L+ L+LS N + P S L+SLR L
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALV----RLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 452 VSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGL 502
+ + T+ N F +L L + S N+L + + +TP +L+ + L
Sbjct: 209 LMHAQV-ATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLERVHL 257
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 90/228 (39%), Gaps = 11/228 (4%)
Query: 234 LLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQ 293
+L I +F + L LD+SDN S GL L L L Q P +
Sbjct: 67 VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSF 353
+LQ+L L N + D F +L +L L N + + L S+ L L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 354 NRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLL 413
NR+ P AF+ L L ++ L N LS ++ L A L+ L L++N
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA-----LQYLRLNDNPWVC-- 239
Query: 414 TNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLD-VSTNNLNGT 460
+ L + F S +P SL Q + R L ++ N+L G
Sbjct: 240 ---DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 6/184 (3%)
Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSV-PDWFNKFIDLEYLSLSYNE 331
NL L L +N A L+ LDLS N SV P F+ L L L
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
LQ PG L +++ L L N L++ F+ L +L + L GN++S +
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176
Query: 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLD 451
+ L+ L L N + + + + L +L L NN+S +L L +L+YL
Sbjct: 177 HS-----LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231
Query: 452 VSTN 455
++ N
Sbjct: 232 LNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 90/228 (39%), Gaps = 11/228 (4%)
Query: 234 LLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQ 293
+L I +F + L LD+SDN S GL L L L Q P +
Sbjct: 66 VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 125
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSF 353
+LQ+L L N + D F +L +L L N + + L S+ L L
Sbjct: 126 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 185
Query: 354 NRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLL 413
NR+ P AF+ L L ++ L N LS ++ L A L+ L L++N
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA-----LQYLRLNDNPWVC-- 238
Query: 414 TNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLD-VSTNNLNGT 460
+ L + F S +P SL Q + R L ++ N+L G
Sbjct: 239 ---DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 283
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 6/184 (3%)
Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSV-PDWFNKFIDLEYLSLSYNE 331
NL L L +N A L+ LDLS N SV P F+ L L L
Sbjct: 56 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 115
Query: 332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
LQ PG L +++ L L N L++ F+ L +L + L GN++S +
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 175
Query: 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLD 451
+ L+ L L N + + + + L +L L NN+S +L L +L+YL
Sbjct: 176 HS-----LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 230
Query: 452 VSTN 455
++ N
Sbjct: 231 LNDN 234
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 285 QGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP-GSLGNL 343
+VP I T+ Q L L N + P F+ I+L+ L L N+L G++P G +L
Sbjct: 31 HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ 382
T + LDL N+L F RL HL+ + + NKL++
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNS-TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSY 329
L+NL L L +N GA+P + +S T L LDL N + F++ + L+ L +
Sbjct: 63 LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121
Query: 330 NELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVL 388
N+L +P + LT + L L N+L+S AF RL L L GN E ++
Sbjct: 122 NKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIM 179
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Query: 273 NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNEL 332
N L L N P + +L+ L L N + F+ L L L N+L
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 333 QGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFS 392
L +K L + N+L +++PR +RL HL + L N+L D S
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 393 A 393
+
Sbjct: 160 S 160
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 38/213 (17%)
Query: 263 SIVNQVLGLVNLVFLDLSTN--NFQGAVPDAIQNSTSLQHLDLSRN-------------- 306
SI + + L +L +LDLS N +F G + + SL+HLDLS N
Sbjct: 336 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 395
Query: 307 -------HFSSSVPDWFNKFIDLE---YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
H + F+ F+ LE YL +SY + G LTS+ +L ++ N
Sbjct: 396 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 455
Query: 357 -ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
++ + F +L ++LS +L Q V D + L+ L++S+N L L ++
Sbjct: 456 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL-----HRLQLLNMSHNNLLFLDSS 510
Query: 416 QIGNFKNLDSLDLSFNNISG------HIPLSLG 442
+L +LD SFN I H P SL
Sbjct: 511 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 543
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 222 LHSLETLRFSGCLLHHISPLS-FANFSSLVTLDISDNQFADSSIVNQ--VLGLVNLVFLD 278
L L+ L F L ++ S F + L+ LDIS + ++ I LGL +L L
Sbjct: 393 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS---YTNTKIDFDGIFLGLTSLNTLK 449
Query: 279 LSTNNFQ-GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
++ N+F+ + + N+T+L LDLS+ F+ L+ L++S+N L
Sbjct: 450 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 509
Query: 338 GSLGNLTSIKSLDLSFNRLES 358
L S+ +LD SFNR+E+
Sbjct: 510 SHYNQLYSLSTLDCSFNRIET 530
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 242 SFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH 300
SF+NFS L LD+S + +I ++ GL +L L L+ N Q P + TSL++
Sbjct: 46 SFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 103
Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLSFNRLESK 359
L +S + I L+ L++++N + +P NLT++ +DLS+N +++
Sbjct: 104 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
Query: 360 IPRAFKRLRHLRSVNLS 376
+ LR VNLS
Sbjct: 164 TVNDLQFLRENPQVNLS 180
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD 403
+S K++DLSFN L+ +F L+ ++LS EI + D + + L +L
Sbjct: 27 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS----RCEIETIEDK-AWHGLHHLSNLI 81
Query: 404 LSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSE 463
L+ N + +L++L ++ +GQL +L+ L+V+ N ++
Sbjct: 82 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 141
Query: 464 NHFANLTKLVGFDASGN 480
+F+NLT LV D S N
Sbjct: 142 AYFSNLTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 38/213 (17%)
Query: 263 SIVNQVLGLVNLVFLDLSTN--NFQGAVPDAIQNSTSLQHLDLSRN-------------- 306
SI + + L +L +LDLS N +F G + + SL+HLDLS N
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400
Query: 307 -------HFSSSVPDWFNKFIDLE---YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356
H + F+ F+ LE YL +SY + G LTS+ +L ++ N
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 357 -ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
++ + F +L ++LS +L Q V D + L+ L++S+N L L ++
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL-----HRLQLLNMSHNNLLFLDSS 515
Query: 416 QIGNFKNLDSLDLSFNNISG------HIPLSLG 442
+L +LD SFN I H P SL
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 222 LHSLETLRFSGCLLHHISPLS-FANFSSLVTLDISDNQFADSSIVNQ--VLGLVNLVFLD 278
L L+ L F L ++ S F + L+ LDIS + ++ I LGL +L L
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS---YTNTKIDFDGIFLGLTSLNTLK 454
Query: 279 LSTNNFQ-GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
++ N+F+ + + N+T+L LDLS+ F+ L+ L++S+N L
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514
Query: 338 GSLGNLTSIKSLDLSFNRLES 358
L S+ +LD SFNR+E+
Sbjct: 515 SHYNQLYSLSTLDCSFNRIET 535
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 242 SFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH 300
SF+NFS L LD+S + +I ++ GL +L L L+ N Q P + TSL++
Sbjct: 51 SFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108
Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLSFNRLESK 359
L +S + I L+ L++++N + +P NLT++ +DLS+N +++
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
Query: 360 IPRAFKRLRHLRSVNLS 376
+ LR VNLS
Sbjct: 169 TVNDLQFLRENPQVNLS 185
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD 403
+S K++DLSFN L+ +F L+ ++LS EI + D + + L +L
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS----RCEIETIEDK-AWHGLHHLSNLI 86
Query: 404 LSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSE 463
L+ N + +L++L ++ +GQL +L+ L+V+ N ++
Sbjct: 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146
Query: 464 NHFANLTKLVGFDASGN 480
+F+NLT LV D S N
Sbjct: 147 AYFSNLTNLVHVDLSYN 163
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 117/270 (43%), Gaps = 26/270 (9%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
++SL+ L + + ++ A+F SL L I N + L NL LDLS
Sbjct: 299 MNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSH 358
Query: 282 NNFQGAVPDAIQ--NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGS 339
++ + + +Q N LQ+L+LS N F + LE L +++ L P S
Sbjct: 359 SDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
Query: 340 -LGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL---SQEISQVLDMFSACA 395
NL ++ L+LS L++ L+ LR +NL GN S + +L M +
Sbjct: 419 PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLE 478
Query: 396 SNVLES-------------------LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH 436
+L S LDLS+N+L G + + + K L L+++ NNI
Sbjct: 479 ILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRII 537
Query: 437 IPLSLGQLSSLRYLDVSTNNLNGTLSENHF 466
P L LS +++S N L+ T S HF
Sbjct: 538 PPHLLPALSQQSIINLSHNPLDCTCSNIHF 567
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 93/224 (41%), Gaps = 13/224 (5%)
Query: 140 RFLGSLENLMYLNISRAGFVG--IIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXX 197
R L LENL L++S + Q+ NL +LQ+L+L N GL ED +
Sbjct: 343 RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGL--EDQAFKECPQ 400
Query: 198 XXXXXXXXGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDN 257
K P +LH L L S CLL + A L L++ N
Sbjct: 401 LELLDVAFTHLHVKAPHSPF--QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
Query: 258 QFADSSIVN----QVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP 313
F D SI Q++G +L L LS+ N A ++ HLDLS N +
Sbjct: 459 SFQDGSISKTNLLQMVG--SLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSM 516
Query: 314 DWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE 357
D + L YL+++ N ++ P L L+ ++LS N L+
Sbjct: 517 DALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLD 559
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 136/310 (43%), Gaps = 59/310 (19%)
Query: 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDL---SF 353
S++ ++L ++ FS F F ++ L L+ L G +P + + S+K L L SF
Sbjct: 254 SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSF 312
Query: 354 NRLESKIPRAFKRLRHL------RSVNLSGNKLSQ-EISQVLDM------FSACAS---- 396
++L +F LR L R ++L L + E Q LD+ S C +
Sbjct: 313 DQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLK 372
Query: 397 --NVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQ-LSSLRYLDVS 453
L+ L+LS N GL L+ LD++F ++ P S Q L LR L++S
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
Query: 454 TNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIG------LSSC-- 505
+ L T +++ A L L + GNS +S + LQ +G LSSC
Sbjct: 433 -HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNL----LQMVGSLEILILSSCNL 487
Query: 506 -FIGPQFPQWLLSQNHL--------------------IYLDLSNSSISDTIPDRLVKSLS 544
I Q L + NHL +YL++++++I IP L+ +LS
Sbjct: 488 LSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIR-IIPPHLLPALS 546
Query: 545 QINYLNLSYN 554
Q + +NLS+N
Sbjct: 547 QQSIINLSHN 556
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
T L L+L R + D L L LS+N+LQ S+P L ++ LD+SFNR
Sbjct: 55 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
L S A + L L+ + L GN+L +L + LE L L+NN L L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLT-----PTPKLEKLSLANNQLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
+ +NLD+L L N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 249 LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHF 308
L TLD+S NQ ++ Q L L LD+S N A++ LQ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 309 SSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAF 364
+ P LE LSL+ N+L G L L ++ +L L N L + IP+ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
LDLS N S +P L L +S+N L G+L L ++ L L N L++
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD---LSNNTLF 410
P L ++L+ N+L++ + +L N LE+LD L N+L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLL--------NGLENLDTLLLQENSLY 185
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
T L L+L R + D L L LS+N+LQ S+P L ++ LD+SFNR
Sbjct: 55 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
L S A + L L+ + L GN+L +L + LE L L+NN L L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLT-----PTPKLEKLSLANNQLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
+ +NLD+L L N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 249 LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHF 308
L TLD+S NQ ++ Q L L LD+S N A++ LQ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 309 SSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAF 364
+ P LE LSL+ N+L G L L ++ +L L N L + IP+ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
LDLS N S +P L L +S+N L G+L L ++ L L N L++
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD---LSNNTLF 410
P L ++L+ N+L++ + +L N LE+LD L N+L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLL--------NGLENLDTLLLQENSLY 185
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
T L L+L R + D L L LS+N+LQ S+P L ++ LD+SFNR
Sbjct: 55 TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
L S A + L L+ + L GN+L +L + LE L L+NN L L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNNLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
+ +NLD+L L N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
LDLS N S +P L L +S+N L G+L L ++ L L N L++
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD---LSNNTLF 410
P L ++L+ N L++ + +L N LE+LD L N+L+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLL--------NGLENLDTLLLQENSLY 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
T L L+L R + D L L LS+N+LQ S+P L ++ LD+SFNR
Sbjct: 55 TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
L S A + L L+ + L GN+L +L + LE L L+NN L L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNNLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
+ +NLD+L L N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
LDLS N S +P L L +S+N L G+L L ++ L L N L++
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD---LSNNTLF 410
P L ++L+ N L++ + +L N LE+LD L N+L+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLL--------NGLENLDTLLLQENSLY 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
T L L+L R + D L L LS+N+LQ S+P L ++ LD+SFNR
Sbjct: 55 TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
L S A + L L+ + L GN+L +L + LE L L+NN L L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNNLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
+ +NLD+L L N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
LDLS N S +P L L +S+N L G+L L ++ L L N L++
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD---LSNNTLF 410
P L ++L+ N L++ + +L N LE+LD L N+L+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLL--------NGLENLDTLLLQENSLY 185
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
T L L+L R + D L L LS+N+LQ S+P L ++ LD+SFNR
Sbjct: 56 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 112
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
L S A + L L+ + L GN+L +L + LE L L+NN L L
Sbjct: 113 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNNLTELPAG 167
Query: 416 QIGNFKNLDSLDLSFNNI 433
+ +NLD+L L N++
Sbjct: 168 LLNGLENLDTLLLQENSL 185
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
LDLS N S +P L L +S+N L G+L L ++ L L N L++
Sbjct: 83 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD---LSNNTLF 410
P L ++L+ N L++ + +L N LE+LD L N+L+
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPAGLL--------NGLENLDTLLLQENSLY 186
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
T L L+L R + D L L LS+N+LQ S+P L ++ LD+SFNR
Sbjct: 55 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
L S A + L L+ + L GN+L +L + LE L L+NN L L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNQLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
+ +NLD+L L N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 249 LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHF 308
L TLD+S NQ ++ Q L L LD+S N A++ LQ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 309 SSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAF 364
+ P LE LSL+ N+L G L L ++ +L L N L + IP+ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
LDLS N S +P L L +S+N L G+L L ++ L L N L++
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD---LSNNTLF 410
P L ++L+ N+L++ + +L N LE+LD L N+L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLL--------NGLENLDTLLLQENSLY 185
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
T L L+L R + D L L LS+N+LQ S+P L ++ LD+SFNR
Sbjct: 55 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
L S A + L L+ + L GN+L +L + LE L L+NN L L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNQLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
+ +NLD+L L N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 249 LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHF 308
L TLD+S NQ ++ Q L L LD+S N A++ LQ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 309 SSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAF 364
+ P LE LSL+ N+L G L L ++ +L L N L + IP+ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
LDLS N S +P L L +S+N L G+L L ++ L L N L++
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD---LSNNTLF 410
P L ++L+ N+L++ + +L N LE+LD L N+L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLL--------NGLENLDTLLLQENSLY 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
T L L+L R + D L L LS+N+LQ S+P L ++ LD+SFNR
Sbjct: 55 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN 415
L S A + L L+ + L GN+L +L + LE L L+NN L L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----TPTPKLEKLSLANNNLTELPAG 166
Query: 416 QIGNFKNLDSLDLSFNNI 433
+ +NLD+L L N++
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
LDLS N S +P L L +S+N L G+L L ++ L L N L++
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD---LSNNTLF 410
P L ++L+ N L++ + +L N LE+LD L N+L+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLL--------NGLENLDTLLLQENSLY 185
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI 384
L LS+N+LQ S+P L ++ LD+SFNRL S A + L L+ + L GN+L
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNI 433
+L + LE L L+NN L L + +NLD+L L N++
Sbjct: 141 PGLL-----TPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 249 LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHF 308
L TLD+S NQ ++ Q L L LD+S N A++ LQ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 309 SSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAF 364
+ P LE LSL+ N+L G L L ++ +L L N L + IP+ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 19/142 (13%)
Query: 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE 331
+NL +L+ G +P L LDLS N S +P L L +S+N
Sbjct: 60 LNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
L G+L L ++ L L N L++ P L ++L+ N L++ + +L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLL--- 168
Query: 392 SACASNVLESLD---LSNNTLF 410
N LE+LD L N+L+
Sbjct: 169 -----NGLENLDTLLLQENSLY 185
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%)
Query: 254 ISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP 313
++DN+ S L +LV L+L N G P+A + ++ +Q L L N
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 314 DWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354
F L+ L+L N++ +PGS +L S+ SL+L+ N
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 29/121 (23%)
Query: 338 GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASN 397
G G L + L+L N+L P AF+ H++ + L NK+ +
Sbjct: 48 GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE--------------- 92
Query: 398 VLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNL 457
+SN GL L +L+L N IS +P S L+SL L++++N
Sbjct: 93 ------ISNKMFLGL--------HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Query: 458 N 458
N
Sbjct: 139 N 139
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 621 LNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKI 680
L L N L+G P+ + S + L LGEN L L+ L+L N+ S +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 681 PVSLQNCTELRLFDISENEFVGNIP-TWIGERL 712
P S ++ L +++ N F N W E L
Sbjct: 119 PGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 96/232 (41%), Gaps = 13/232 (5%)
Query: 257 NQFADSSIVNQVLGLV------NLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS 310
NQF+ + L V N +L+L NN Q D ++ L+ L L RN
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 311 SVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHL 370
FN L L L N L G+ L+ ++ L L N +ES AF R+ L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 371 RSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSF 430
++L K + IS+ F + +L + N LT +G L+ L++S
Sbjct: 174 MRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMCNIKDMPNLTPLVG----LEELEMSG 227
Query: 431 NNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482
N+ P S LSSL+ L V N+ + N F L LV + + N+L
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWV-MNSQVSLIERNAFDGLASLVELNLAHNNL 278
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 8/165 (4%)
Query: 220 NSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD--SSIVNQVLGLVNLVFL 277
N L SL TL L I +F S L L + +N S N+V L+ L
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179
Query: 278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
+L + A + +L++L+L + +P+ + LE L +S N P
Sbjct: 180 ELKKLEYISE--GAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRP 235
Query: 338 GSLGNLTSIKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGNKLS 381
GS L+S+K L + N S I R AF L L +NL+ N LS
Sbjct: 236 GSFHGLSSLKKLWV-MNSQVSLIERNAFDGLASLVELNLAHNNLS 279
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
+VP I +T + HL + N + P F+ L YL+L+ N+L G LT
Sbjct: 32 ASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 346 IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVL 388
+ L L N+L+S F L+ L + L N E S +L
Sbjct: 90 LTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDIL 132
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS 335
L L N P + T L +L+L+ N ++ F+K L +L+L N+L+ S
Sbjct: 44 VLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-S 102
Query: 336 IP-GSLGNLTSIKSLDL 351
IP G NL S+ + L
Sbjct: 103 IPMGVFDNLKSLTHIYL 119
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 128/298 (42%), Gaps = 36/298 (12%)
Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNN 283
S+E++ +IS +F FS L LD++ S + + ++GL L L LS N
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANK 312
Query: 284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSV-PDWFNKFIDLEYLSLSYNELQGSIPGSLG- 341
F+ + N SL HL + N + +L L LS+++++ S +L
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 342 -NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL----SQEISQVLDMFSACAS 396
NL+ ++SL+LS+N S AFK L ++L+ +L +Q Q L +
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL-- 430
Query: 397 NVLES-LDLSNNTLFGLL--------------------TNQIGNFKNLDSLDLSFNNISG 435
N+ S LD+S+ LF L TN + L+ L LSF ++S
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490
Query: 436 HIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTP 493
+ L + ++D+S N L + E L+ L G + S + ++ PS P
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIE----ALSHLKGIYLNLASNHISIILPSLLP 544
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 17/224 (7%)
Query: 142 LGSLENLMYLNISRAGF--VGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXX 199
L +LENL L++S Q+ NLS+LQ L+L N L E F
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL- 404
Query: 200 XXXXXXGVDLS----KTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDIS 255
+DL+ K D +LH L+ L S LL S F +L L++
Sbjct: 405 -------LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Query: 256 DNQFADSSI--VNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP 313
N F +I N + L L L LS + A + + H+DLS N +SS
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
Query: 314 DWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE 357
+ + + YL+L+ N + +P L L+ ++++L N L+
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 44/293 (15%)
Query: 216 PLITNSLHS----LETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ--FADSSIVNQVL 269
P I N+ S L L + C ++ I +F + L TL ++ N F + ++
Sbjct: 46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105
Query: 270 GLVNLVFLD--LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWF--NKFIDLEY 324
L +L F+ +S+ +F +P + N +L+ L L NH SS +P F K L++
Sbjct: 106 ALKHLFFIQTGISSIDF---IP--LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160
Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNK----- 379
+ + + L SL T++ SL+L+ N + P AF +S+N G +
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEPGAFDSAV-FQSLNFGGTQNLLVI 218
Query: 380 ---LSQEISQVL------DM---------FSACASNVLESLDLSNNTLFGLLTNQIGNFK 421
L Q L DM F +ES++L + F + +N F
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278
Query: 422 NLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNG--TLSENHFANLTKL 472
L LDL+ ++S +P L LS+L+ L +S N +S ++F +LT L
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSL 340
+N +P I + +LD N F+ VP + + L + LS N + S
Sbjct: 18 SNKGLKVLPKGIPRDVTELYLD--GNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 341 GNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLS 381
N+T + +L LS+NRL PR F L+ LR ++L GN +S
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%)
Query: 288 VPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347
VP + N L +DLS N S+ F+ L L LSYN L+ P + L S++
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 348 SLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380
L L N + AF L L + + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 402 LDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTL 461
+DLSNN + L N L +L LS+N + P + L SLR L + N+++ +
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VV 117
Query: 462 SENHFANLTKLVGFDASGNSL 482
E F +L+ L N L
Sbjct: 118 PEGAFNDLSALSHLAIGANPL 138
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI-QNSTSLQHL 301
F++F+ L L ++ N+ + N GL +L+ L+LS NF G++ + +N L+ L
Sbjct: 295 FSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEVL 352
Query: 302 DLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIP 361
DLS NH + F +L+ L+L N+L+ G LTS++ + L N + P
Sbjct: 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Query: 362 R 362
R
Sbjct: 413 R 413
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 247 SSLVTLDISDNQFADSSIVN----------QVLGLVNLVFLDLSTNNFQGAVPDAIQ--- 293
+S+ TLD+S N F +S Q L L N + S + PD
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 294 -NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLS 352
++ ++ DLS++ + + F+ F DLE L+L+ NE+ + LT + L+LS
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 353 FNRLESKIPRAFKRLRHLRSVNLSGNKL 380
N L S R F+ L L ++LS N +
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%)
Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYN 330
+L L L+ N +A T L L+LS+N S F LE L LSYN
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 331 ELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
++ S L ++K L L N+L+S F RL L+ + L N
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 21/192 (10%)
Query: 296 TSLQHLDLSRNHFSSSVPDWFNKFI---DLEYLSLSYNELQGSIPGSLG----------- 341
TS+ LDLS N F S+ F I ++ L LS + GS G
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 342 -NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLE 400
+ +K+ DLS +++ + + F L + L+ N EI+++ D +++L+
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN----EINKIDDNAFWGLTHLLK 327
Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460
L+LS N L + + N L+ LDLS+N+I S L +L+ L + TN L +
Sbjct: 328 -LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-S 385
Query: 461 LSENHFANLTKL 472
+ + F LT L
Sbjct: 386 VPDGIFDRLTSL 397
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 712 LSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVI 753
LS +I+L L NQF GLA+L++L L+ NL G +
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
+VP I T Q L L+ N + P F+ ++L+ L + N+L G LT
Sbjct: 25 ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 346 IKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGNKLSQEISQVL 388
+ LDL+ N L+S IPR AF L+ L + L N E ++
Sbjct: 83 LTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW-FNKFIDLEYLSLSYNELQGS 335
L+L +N Q T L L LS+N S+PD F+K L L L N+LQ
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 336 IPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
G LT +K L L N+L+S F RL L+ + L N
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
+VP I +S + L+L N S F+K L LSLS N++Q G LT +
Sbjct: 21 SVPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
L L N+L+S F +L L+ + L N+L + D ++
Sbjct: 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNS-TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSY 329
L L L LS N Q ++PD + + T L L L N S F+K L+ L+L
Sbjct: 51 LTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109
Query: 330 NELQGSIPGSLGNLTSIKSLDLSFNRLESKIPR 362
N+L+ G LTS++ + L N + PR
Sbjct: 110 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 270 GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSY 329
NL L L ++ DA + SL+HLDLS NH SS WF L+YL+L
Sbjct: 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107
Query: 330 NELQG-SIPGSLGNLTSIKSLDLSFNRLESKIPR 362
N Q + NLT++++L + S+I R
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 62/145 (42%), Gaps = 40/145 (27%)
Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNST------SLQHLDLSRNHFSSSVPDWFNKFIDLEY 324
L +L FLDLS N V + ++NS SLQ L LS+NH S
Sbjct: 333 LKSLEFLDLSENLM---VEEYLKNSACKGAWPSLQTLVLSQNHLRSM------------- 376
Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI 384
+ G I +L NLTS LD+S N +P + + +R +NLS
Sbjct: 377 ------QKTGEILLTLKNLTS---LDISRNTFH-PMPDSCQWPEKMRFLNLS-------- 418
Query: 385 SQVLDMFSACASNVLESLDLSNNTL 409
S + + C LE LD+SNN L
Sbjct: 419 STGIRVVKTCIPQTLEVLDVSNNNL 443
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 22/119 (18%)
Query: 642 LFFLHLGEN----DFTGNLPTSLGTLSSLQIL-----HLRGNRFSGKIPVSLQNCTELRL 692
L FL L EN ++ N G SLQ L HLR + +G+I ++L+N T L
Sbjct: 336 LEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL-- 392
Query: 693 FDISENEF--VGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
DIS N F + + W E++ + L S G + C +L++LD+S+NNL
Sbjct: 393 -DISRNTFHPMPDSCQW-PEKMRFLNLSS------TGIRVVKTCIPQTLEVLDVSNNNL 443
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 270 GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSY 329
NL L L ++ DA + SL+HLDLS NH SS WF L+YL+L
Sbjct: 74 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 133
Query: 330 NELQG-SIPGSLGNLTSIKSLDLSFNRLESKIPR 362
N Q + NLT++++L + S+I R
Sbjct: 134 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 167
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 62/145 (42%), Gaps = 40/145 (27%)
Query: 271 LVNLVFLDLSTNNFQGAVPDAIQNST------SLQHLDLSRNHFSSSVPDWFNKFIDLEY 324
L +L FLDLS N V + ++NS SLQ L LS+NH S
Sbjct: 359 LKSLEFLDLSENLM---VEEYLKNSACKGAWPSLQTLVLSQNHLRSM------------- 402
Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI 384
+ G I +L NLTS LD+S N +P + + +R +NLS
Sbjct: 403 ------QKTGEILLTLKNLTS---LDISRNTFH-PMPDSCQWPEKMRFLNLS-------- 444
Query: 385 SQVLDMFSACASNVLESLDLSNNTL 409
S + + C LE LD+SNN L
Sbjct: 445 STGIRVVKTCIPQTLEVLDVSNNNL 469
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 22/119 (18%)
Query: 642 LFFLHLGEN----DFTGNLPTSLGTLSSLQIL-----HLRGNRFSGKIPVSLQNCTELRL 692
L FL L EN ++ N G SLQ L HLR + +G+I ++L+N T L
Sbjct: 362 LEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL-- 418
Query: 693 FDISENEF--VGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNL 749
DIS N F + + W E++ + L S G + C +L++LD+S+NNL
Sbjct: 419 -DISRNTFHPMPDSCQW-PEKMRFLNLSS------TGIRVVKTCIPQTLEVLDVSNNNL 469
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI-- 292
+H + P S ++F+ L+ + N F DS + L L L L N + A+
Sbjct: 344 IHMVCPPSPSSFT---FLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 293 QNSTSLQHLDLSRNHFSSSVPDWFNKFID-LEYLSLSYNELQGSIPGSLGNLTSIKSLDL 351
+N +SL+ LD+S N +S D + + + L+LS N L GS+ L +K LDL
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL 457
Query: 352 SFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSA 393
NR+ S IP+ L+ L+ +N++ N+L V D ++
Sbjct: 458 HNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS 498
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 23/155 (14%)
Query: 321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLRSVNLSGNK 379
DLEYL +S+N LQ S + S++ LDLSFN + + + F L L + LS K
Sbjct: 101 DLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157
Query: 380 LSQ-EISQVLDMFSAC----------ASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDL 428
Q ++ V + +C ESL + N T+ L+ + F +++
Sbjct: 158 FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS--VQVNM 215
Query: 429 SFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSE 463
S N + GH+ QLS+++ D + L LSE
Sbjct: 216 SVNAL-GHL-----QLSNIKLNDENCQRLMTFLSE 244
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 217 LITNSLHSLETLRFS-GCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLV 275
L+T ++ SLETL S L H + A S++ L++S N S V + L +
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS--VFRCLP-PKVK 453
Query: 276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPD-WFNKFIDLEYLSLSYNELQG 334
LDL N ++P + + +LQ L+++ N SVPD F++ L+Y+ L N
Sbjct: 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPWDC 511
Query: 335 SIPG 338
+ PG
Sbjct: 512 TCPG 515
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 354 NRLESKIPRAFKRLRHL--------RSVNLSGNKLSQEISQVLDMFSACASNVLESLDLS 405
N LES + + + L H+ ++++LS N +S+ L M + L L LS
Sbjct: 30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISE-----LRMPDISFLSELRVLRLS 84
Query: 406 NNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENH 465
+N + L + ++L+ LD+S N + +S ++SLR+LD+S N+ +
Sbjct: 85 HNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKE 141
Query: 466 FANLTKLV 473
F NLTKL
Sbjct: 142 FGNLTKLT 149
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 245 NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLS 304
N SSL TLD+S N + +++ L+LS+N G+V + + LDL
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV--LDLH 458
Query: 305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIP 361
N S +P L+ L+++ N+L+ G LTS++ + L N + P
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 70/188 (37%), Gaps = 64/188 (34%)
Query: 644 FLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSG--KIPVSLQNCTELRLFDISENEFV 701
FL+ +N FT ++ TL LQ L L+ N K+ + +N + L D+S N
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN--- 413
Query: 702 GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA-SLKILDLSSNNLTGVIPRCINNL 760
SL ++ + C A S+ +L+LSSN LTG + RC+
Sbjct: 414 -----------------SLNSHAYD-----RTCAWAESILVLNLSSNMLTGSVFRCL--- 448
Query: 761 AGMAKEVLEVDKFFEDALXXXXXXXXXXXXXXXXXLKVLDLSANYFSGEIPSQVTNLVGL 820
+KVLDL N IP VT+L L
Sbjct: 449 --------------------------------PPKVKVLDLHNNRIMS-IPKDVTHLQAL 475
Query: 821 QTLKLSHN 828
Q L ++ N
Sbjct: 476 QELNVASN 483
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 247 SSLVTLDISDNQFADSSIVN----------QVLGLVNLVFLDLSTNNFQGAVPDAIQ--- 293
+S+ TLD+S N F +S Q L L N + S + PD
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 294 -NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLS 352
++ ++ DLS++ + + F+ F DLE L+L+ NE+ + LT +K L L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALD 331
Query: 353 FNRLESKIPRAFKRLRHLRSVNLSGN 378
N+L+S F RL L+ + L N
Sbjct: 332 TNQLKSVPDGIFDRLTSLQKIWLHTN 357
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS-TSLQHL 301
F++F+ L L ++ N+ + N GL +L L L TN + +VPD I + TSLQ +
Sbjct: 295 FSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLKELALDTNQLK-SVPDGIFDRLTSLQKI 352
Query: 302 DLSRNHFSSSVP------DWFNK 318
L N + S P W NK
Sbjct: 353 WLHTNPWDCSCPRIDYLSRWLNK 375
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIP 337
DLS + + + T L+ L L++N + + F L+ L+L N+L+
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPD 340
Query: 338 GSLGNLTSIKSLDLSFNRLESKIPR 362
G LTS++ + L N + PR
Sbjct: 341 GIFDRLTSLQKIWLHTNPWDCSCPR 365
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 712 LSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVI 753
LS +I+L L NQF GLA+L++L L+ NL G +
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
+VP I +T Q L L N + P F++ L L L N+L G LT
Sbjct: 22 ASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 346 IKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGNKLSQEISQVL 388
+ L L+ N+L+S IPR AF LR L + L N S +L
Sbjct: 80 LTQLSLNDNQLKS-IPRGAFDNLRSLTHIWLLNNPWDCACSDIL 122
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 654 GNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLS 713
++PT + T + Q+L+L NR + P T+L D+ N+ +P + ++L+
Sbjct: 22 ASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLT 78
Query: 714 GIILLSLRANQFHGF 728
+ LSL NQ
Sbjct: 79 QLTQLSLNDNQLKSI 93
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 108/280 (38%), Gaps = 75/280 (26%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
L +LE L +G + ISPLS N L L I N+ D ++ + L NL L L+
Sbjct: 65 LTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNE 119
Query: 282 NNFQGAVPDA---------------------IQNSTSLQHLDLSRNHFSSSVPDWFNKFI 320
+N P A + N T L +L ++ + P
Sbjct: 120 DNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANLT 177
Query: 321 DLEYLSLSYNELQGSIP--------------------GSLGNLTSIKSLDLSFNRLESKI 360
DL LSL+YN+++ P + N T + SL + N++
Sbjct: 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLS 237
Query: 361 P--------------------RAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLE 400
P A K L L+ +N+ N++S +IS VL+ S L
Sbjct: 238 PLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQIS-DIS-VLNNLSQ-----LN 290
Query: 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS 440
SL L+NN L IG NL +L LS N+I+ PL+
Sbjct: 291 SLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLA 330
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
+VP I +T Q L L N + P F++ L L L N+L G LT
Sbjct: 22 ASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 346 IKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGNKLSQEISQVL 388
+ L L+ N+L+S IPR AF L+ L + L N S +L
Sbjct: 80 LTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS 677
LQ+ N+ N + FL L+L N T LP + LS+L++L L NR +
Sbjct: 234 LQIFNISANIFK---------YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
Query: 678 GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLA 737
+P L +C +L+ F +N V +P W L + L + N F
Sbjct: 284 S-LPAELGSCFQLKYFYFFDN-MVTTLP-WEFGNLCNLQFLGVEGNPLEKQF-------- 332
Query: 738 SLKILDLSSNNLTGVI 753
LKI L+ ++TG+I
Sbjct: 333 -LKI--LTEKSVTGLI 345
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 796 LKVLDLSANYFS--------------GEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM 841
L++ ++SAN F E+P+++ NL L+ L LSHN + +P +G+
Sbjct: 234 LQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSC 292
Query: 842 KSVEALDFSSNRLQGEIP---KNMVNLEFLEI 870
++ F N + +P N+ NL+FL +
Sbjct: 293 FQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGV 323
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 267 QVLGLVNLVFLDLSTNNFQ--------------GAVPDAIQNSTSLQHLDLSRNHFSSSV 312
L L NL ++S N F+ +P I+N ++L+ LDLS N +S+
Sbjct: 227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSL 285
Query: 313 PDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360
P L+Y ++ + ++P GNL +++ L + N LE +
Sbjct: 286 PAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 122/309 (39%), Gaps = 37/309 (11%)
Query: 144 SLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXXXXXX 203
SL N S F+G+ +NL LDL N L + + F W+
Sbjct: 238 SLSNSQLSTTSNTTFLGL------KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF--- 288
Query: 204 XXGVDLSKTSDGPLITNSLHSLETLRF------------SGCLLHHISPLSFANFSSLVT 251
L + L ++SLH L +R+ S L I SF L
Sbjct: 289 -----LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 343
Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH-----LDLSRN 306
L++ DN N GL+NL +L LS N+F + SL H L+L++N
Sbjct: 344 LNMEDNDIPGIK-SNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKN 401
Query: 307 HFSSSVPDWFNKFIDLEYLSLSYNELQGSIPG-SLGNLTSIKSLDLSFNRLESKIPRAFK 365
S D F+ LE L L NE+ + G L +I + LS+N+ +F
Sbjct: 402 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 461
Query: 366 RLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDS 425
+ L+ + L L + + F + L LDLSNN + + + + + L+
Sbjct: 462 LVPSLQRLMLRRVAL-KNVDSSPSPFQPLRN--LTILDLSNNNIANINDDMLEGLEKLEI 518
Query: 426 LDLSFNNIS 434
LDL NN++
Sbjct: 519 LDLQHNNLA 527
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 7/169 (4%)
Query: 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE 331
N+ L+L+ N + + L LD+ N S P+ K L+ L+L +NE
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
L + T++ L L N ++ F + ++L +++LS N LS +
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-----KLG 149
Query: 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKN--LDSLDLSFNNISGHIP 438
+ L+ L LSNN + L + ++ F N L L+LS N I P
Sbjct: 150 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 198
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 116/312 (37%), Gaps = 65/312 (20%)
Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLV-------------------------NLVFL 277
F +L+TLD+S N + + + QV +L L
Sbjct: 127 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 186
Query: 278 DLSTNNFQGAVPDAIQ---------------------------NSTSLQHLDLSRNHFSS 310
+LS+N + P +TS+++L LS + S+
Sbjct: 187 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 246
Query: 311 SVPDWF--NKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLR 368
+ F K+ +L L LSYN L S L ++ L +N ++ + L
Sbjct: 247 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 306
Query: 369 HLRSVNLSGNKLSQEISQV----LDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLD 424
++R +NL + Q IS +D FS LE L++ +N + G+ +N NL
Sbjct: 307 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 366
Query: 425 SLDL-----SFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASG 479
L L S ++ +SL S L L+++ N + + + F+ L L D
Sbjct: 367 YLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKI-SKIESDAFSWLGHLEVLDLGL 424
Query: 480 NSLVLKVVSPSW 491
N + ++ W
Sbjct: 425 NEIGQELTGQEW 436
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ 382
+ L N ++ PG+ ++ +DLS N++ P AF+ LR L S+ L GNK+++
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 219 TNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLD 278
TN ++ +R + I P +F+ + L +D+S+NQ ++ + + GL +L L
Sbjct: 28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLV 86
Query: 279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPG 338
L N + SLQ L L+ N + D F +L LSL N+LQ G
Sbjct: 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146
Query: 339 SLGNLTSIKSLDLSFN 354
+ L +I+++ L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ 382
+ L N ++ PG+ ++ +DLS N++ P AF+ LR L S+ L GNK+++
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 219 TNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLD 278
TN ++ +R + I P +F+ + L +D+S+NQ ++ + + GL +L L
Sbjct: 28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLV 86
Query: 279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPG 338
L N + SLQ L L+ N + D F +L LSL N+LQ G
Sbjct: 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146
Query: 339 SLGNLTSIKSLDLSFN 354
+ L +I+++ L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 286 GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345
+VP I +T Q L L N + P F++ L L L N+L G LT
Sbjct: 30 ASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 346 IKSLDLSFNRLESKIPR-AFKRLRHLRSVNLSGNKLSQEISQVL 388
+ L L+ N+L+S IPR AF L+ L + L N S +L
Sbjct: 88 LTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCACSDIL 130
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 122/309 (39%), Gaps = 37/309 (11%)
Query: 144 SLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXXXXXX 203
SL N S F+G+ +NL LDL N L + + F W+
Sbjct: 228 SLSNSQLSTTSNTTFLGL------KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF--- 278
Query: 204 XXGVDLSKTSDGPLITNSLHSLETLRF------------SGCLLHHISPLSFANFSSLVT 251
L + L ++SLH L +R+ S L I SF L
Sbjct: 279 -----LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333
Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH-----LDLSRN 306
L++ DN N GL+NL +L LS N+F + SL H L+L++N
Sbjct: 334 LNMEDNDIPGIK-SNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKN 391
Query: 307 HFSSSVPDWFNKFIDLEYLSLSYNELQGSIPG-SLGNLTSIKSLDLSFNRLESKIPRAFK 365
S D F+ LE L L NE+ + G L +I + LS+N+ +F
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451
Query: 366 RLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDS 425
+ L+ + L L + + F + L LDLSNN + + + + + L+
Sbjct: 452 LVPSLQRLMLRRVAL-KNVDSSPSPFQPLRN--LTILDLSNNNIANINDDMLEGLEKLEI 508
Query: 426 LDLSFNNIS 434
LDL NN++
Sbjct: 509 LDLQHNNLA 517
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 7/169 (4%)
Query: 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE 331
N+ L+L+ N + + L LD+ N S P+ K L+ L+L +NE
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
L + T++ L L N ++ F + ++L +++LS N LS +
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-----KLG 139
Query: 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKN--LDSLDLSFNNISGHIP 438
+ L+ L LSNN + L + ++ F N L L+LS N I P
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 116/312 (37%), Gaps = 65/312 (20%)
Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLV-------------------------NLVFL 277
F +L+TLD+S N + + + QV +L L
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176
Query: 278 DLSTNNFQGAVPDAIQ---------------------------NSTSLQHLDLSRNHFSS 310
+LS+N + P +TS+++L LS + S+
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 311 SVPDWF--NKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLR 368
+ F K+ +L L LSYN L S L ++ L +N ++ + L
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296
Query: 369 HLRSVNLSGNKLSQEISQV----LDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLD 424
++R +NL + Q IS +D FS LE L++ +N + G+ +N NL
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 425 SLDL-----SFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASG 479
L L S ++ +SL S L L+++ N + + + F+ L L D
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKI-SKIESDAFSWLGHLEVLDLGL 414
Query: 480 NSLVLKVVSPSW 491
N + ++ W
Sbjct: 415 NEIGQELTGQEW 426
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 122/309 (39%), Gaps = 37/309 (11%)
Query: 144 SLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVXXXXXXXXXX 203
SL N S F+G+ +NL LDL N L + + F W+
Sbjct: 233 SLSNSQLSTTSNTTFLGL------KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF--- 283
Query: 204 XXGVDLSKTSDGPLITNSLHSLETLRF------------SGCLLHHISPLSFANFSSLVT 251
L + L ++SLH L +R+ S L I SF L
Sbjct: 284 -----LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 338
Query: 252 LDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH-----LDLSRN 306
L++ DN N GL+NL +L LS N+F + SL H L+L++N
Sbjct: 339 LNMEDNDIPGIK-SNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKN 396
Query: 307 HFSSSVPDWFNKFIDLEYLSLSYNELQGSIPG-SLGNLTSIKSLDLSFNRLESKIPRAFK 365
S D F+ LE L L NE+ + G L +I + LS+N+ +F
Sbjct: 397 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 456
Query: 366 RLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDS 425
+ L+ + L L + + F + L LDLSNN + + + + + L+
Sbjct: 457 LVPSLQRLMLRRVAL-KNVDSSPSPFQPLRN--LTILDLSNNNIANINDDMLEGLEKLEI 513
Query: 426 LDLSFNNIS 434
LDL NN++
Sbjct: 514 LDLQHNNLA 522
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 7/169 (4%)
Query: 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE 331
N+ L+L+ N + + L LD+ N S P+ K L+ L+L +NE
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 332 LQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMF 391
L + T++ L L N ++ F + ++L +++LS N LS +
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-----KLG 144
Query: 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKN--LDSLDLSFNNISGHIP 438
+ L+ L LSNN + L + ++ F N L L+LS N I P
Sbjct: 145 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 193
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 116/312 (37%), Gaps = 65/312 (20%)
Query: 243 FANFSSLVTLDISDNQFADSSIVNQVLGLV-------------------------NLVFL 277
F +L+TLD+S N + + + QV +L L
Sbjct: 122 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 181
Query: 278 DLSTNNFQGAVPDAIQ---------------------------NSTSLQHLDLSRNHFSS 310
+LS+N + P +TS+++L LS + S+
Sbjct: 182 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 241
Query: 311 SVPDWF--NKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLR 368
+ F K+ +L L LSYN L S L ++ L +N ++ + L
Sbjct: 242 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 301
Query: 369 HLRSVNLSGNKLSQEISQV----LDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLD 424
++R +NL + Q IS +D FS LE L++ +N + G+ +N NL
Sbjct: 302 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 361
Query: 425 SLDL-----SFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASG 479
L L S ++ +SL S L L+++ N + + + F+ L L D
Sbjct: 362 YLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKI-SKIESDAFSWLGHLEVLDLGL 419
Query: 480 NSLVLKVVSPSW 491
N + ++ W
Sbjct: 420 NEIGQELTGQEW 431
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 248 SLVTLDISDNQFADSSIVNQVLG-LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRN 306
++ +LD+S+N+ + I N L VNL L L++N D+ + SL+HLDLS N
Sbjct: 27 AVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 84
Query: 307 HFSSSVPDWFNKFIDLEYLSL 327
+ S+ WF L +L+L
Sbjct: 85 YLSNLSSSWFKPLSSLTFLNL 105
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 396 SNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
+ ++SLDLSNN + + + + NL +L L+ N I+ S L SL +LD+S N
Sbjct: 25 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 84
Query: 456 NLNGTLSENHFANLTKLVGFDASGN 480
L+ LS + F L+ L + GN
Sbjct: 85 YLSN-LSSSWFKPLSSLTFLNLLGN 108
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
++P + + +++ LDLS N + + ++L+ L L+ N + S +L S+
Sbjct: 19 SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
+ LDLS+N L + FK L L +NL GN
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 108
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 248 SLVTLDISDNQFADSSIVNQVLG-LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRN 306
++ +LD+S+N+ + I N L VNL L L++N D+ + SL+HLDLS N
Sbjct: 53 AVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 307 HFSSSVPDWFNKFIDLEYLSL 327
+ S+ WF L +L+L
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNL 131
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 287 AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
++P + + +++ LDLS N + + ++L+ L L+ N + S +L S+
Sbjct: 45 SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
+ LDLS+N L + FK L L +NL GN
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 396 SNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
+ ++SLDLSNN + + + + NL +L L+ N I+ S L SL +LD+S N
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 456 NLNGTLSENHFANLTKLVGFDASGN 480
L+ LS + F L+ L + GN
Sbjct: 111 YLSN-LSSSWFKPLSSLTFLNLLGN 134
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Query: 237 HISPLSFANFSSLVTLDISDNQFA--DSSIVNQVLGLVNLVFLDLSTN-NFQGAVPDAIQ 293
++ SF + +L L + N A D++ GL L LDLS N + P +
Sbjct: 45 YVPAASFQSCRNLTILWLHSNALAGIDAAAFT---GLTLLEQLDLSDNAQLRVVDPTTFR 101
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSF 353
L L L R P F L+YL L N LQ + +L ++ L L
Sbjct: 102 GLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHG 161
Query: 354 NRLESKIPRAFKRLRHLRSVNLSGNKLSQ 382
NR+ S AF+ L L + L N +++
Sbjct: 162 NRIPSVPEHAFRGLHSLDRLLLHQNHVAR 190
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 87/250 (34%), Gaps = 40/250 (16%)
Query: 134 QGIQ-IPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGW 192
QG+Q +P + + ++L+ +R +V Q + NL L L N L G+ F
Sbjct: 20 QGLQAVPTGIPASSQRIFLHGNRISYVPAASFQ--SCRNLTILWLHSNALAGIDAAAFTG 77
Query: 193 VXXXXXXXXXXXXGVDLSKTSD----GPLITNSLHSLETLRFSGCLLHHISPLSFANFSS 248
+ +DLS + P L L TL C L + P F
Sbjct: 78 LTLLEQ--------LDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFR---- 125
Query: 249 LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHF 308
GL L +L L NN Q + ++ +L HL L N
Sbjct: 126 ---------------------GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 309 SSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLR 368
S F L+ L L N + P + +L + +L L N L LR
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLR 224
Query: 369 HLRSVNLSGN 378
L+ + L+ N
Sbjct: 225 SLQYLRLNDN 234
>pdb|3UGJ|A Chain A, Formyl Glycinamide Ribonucletide Amidotransferase From
Salmonella Typhimurum: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 292 IQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDL 351
I ++T QHL L NHF N+ IDL + L G P ++ ++K+
Sbjct: 585 IGDATEEQHLSLHDNHFD-------NQPIDL-----PLDVLLGKTPKMTRDVQTLKAKGD 632
Query: 352 SFNRLESKIPRAFKRLRHLRSV 373
+ NR + I A KR+ HL +V
Sbjct: 633 ALNRADITIADAVKRVLHLPTV 654
>pdb|1T3T|A Chain A, Structure Of Formylglycinamide Synthetase
pdb|3UJN|A Chain A, Formyl Glycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium : Role Of The Atp Complexation
And Glutaminase Domain In Catalytic Coupling
pdb|3UMM|A Chain A, Formylglycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 292 IQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDL 351
I ++T QHL L NHF N+ IDL + L G P ++ ++K+
Sbjct: 585 IGDATEEQHLSLHDNHFD-------NQPIDL-----PLDVLLGKTPKMTRDVQTLKAKGD 632
Query: 352 SFNRLESKIPRAFKRLRHLRSV 373
+ NR + I A KR+ HL +V
Sbjct: 633 ALNRADITIADAVKRVLHLPTV 654
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 140/362 (38%), Gaps = 59/362 (16%)
Query: 222 LHSLETLRFSGCLL--HHISPLSFANFS--SLVTLDISDNQFADSSIVNQVLGLVNLVFL 277
L E +R C L H + A + SL L + N+ D+ V+LV
Sbjct: 23 LQQYEVVRLDDCGLTEEHCKDIGSALRANPSLTELCLRTNELGDAG--------VHLVLQ 74
Query: 278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGS-- 335
L + P SLQ+ L+ +P L L LS N L +
Sbjct: 75 GLQS-------PTCKIQKLSLQNCSLT-EAGCGVLPSTLRSLPTLRELHLSDNPLGDAGL 126
Query: 336 ---IPGSLGNLTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVNLSGNKLSQEISQVL 388
G L ++ L L + RL + + + R L+ + +S N + + ++VL
Sbjct: 127 RLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVL 186
Query: 389 DMFSACASNVLESLDLSN--------NTLFGLLTNQIGNFKNLDSLDLSFNNI--SGHIP 438
A ++ LE+L L N L G++ +Q +L LDL N + +G
Sbjct: 187 GQGLADSACQLETLRLENCGLTPANCKDLCGIVASQ----ASLRELDLGSNGLGDAGIAE 242
Query: 439 LSLGQLSSLRYL--------DVSTN---NLNGTLSENHFANLTKLVGFDASGNSLVLKVV 487
L G LS L D++ + +L L L G + G+ +
Sbjct: 243 LCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLKELSLAG-NKLGDEGARLLC 301
Query: 488 SPSWTPPFQLQAIGLSSCFIGPQFPQ---WLLSQN-HLIYLDLSNSSISDTIPDRLVKSL 543
P QL+++ + SC + Q +L+QN HL+ L LS++ + D+ L ++L
Sbjct: 302 ESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQAL 361
Query: 544 SQ 545
SQ
Sbjct: 362 SQ 363
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 13/160 (8%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
L++L L + ++PL N + + L++S N + V+ + GL ++ LDL++
Sbjct: 68 LNNLIGLELKDNQITDLTPLK--NLTKITELELSGNPLKN---VSAIAGLQSIKTLDLTS 122
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
P + ++LQ L L N ++ P +L+YLS+ N++ P L
Sbjct: 123 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LA 176
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLS 381
NL+ + +L N++ P A L +L V+L N++S
Sbjct: 177 NLSKLTTLRADDNKISDISPLA--SLPNLIEVHLKDNQIS 214
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 43/168 (25%)
Query: 315 WFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVN 374
+ N I LE L N++ P L NLT I L+LS N L++ + L+S+
Sbjct: 67 YLNNLIGLE---LKDNQITDLTP--LKNLTKITELELSGNPLKN-----VSAIAGLQSI- 115
Query: 375 LSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS 434
+ LD+ S ++V LSN + L NQI N
Sbjct: 116 -----------KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS------------- 151
Query: 435 GHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482
L L++L+YL + N +N ANL+KL A N +
Sbjct: 152 -----PLAGLTNLQYLSIGNNQVNDL---TPLANLSKLTTLRADDNKI 191
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 246 FSSLVTLDISDN-QFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNS-----TSLQ 299
F +L TLD+SDN + + +++ + L L+ N P + ++ LQ
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231
Query: 300 HLDLSRNHF--SSSVP--DWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355
LDLS N ++ P DW ++ L L+LS+ L+ +P L S+ LDLS+NR
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQ---LNSLNLSFTGLK-QVPKGLPAKLSV--LDLSYNR 285
Query: 356 LE 357
L+
Sbjct: 286 LD 287
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 64/149 (42%), Gaps = 18/149 (12%)
Query: 415 NQIGNFKNLDSLDLSFNN-------ISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFA 467
Q+ F L +LDLS N IS PL L L + +G S A
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226
Query: 468 NLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIG-PQFPQWLLSQNHLIYLDL 526
+ +L G D S NSL +PS P QL ++ LS F G Q P+ L ++ L LDL
Sbjct: 227 RV-QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS--FTGLKQVPKGLPAK--LSVLDL 281
Query: 527 S-NSSISDTIPDRLVKSLSQINYLNLSYN 554
S N + PD L Q+ L+L N
Sbjct: 282 SYNRLDRNPSPDE----LPQVGNLSLKGN 306
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 234 LLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQ 293
+ + L NFS+ DI + F +S VN++L L++N + +
Sbjct: 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL---------LTSNRLENVQHKMFK 102
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSF 353
SL+ L L N + D F + LSL N++ PG+ L S+ +L+L
Sbjct: 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162
Query: 354 N 354
N
Sbjct: 163 N 163
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 288 VPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI 346
+P+ I T+ L L+ N F+ F K L ++ S N++ G+ + +
Sbjct: 26 IPEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83
Query: 347 KSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLS 381
+ L+ NRLE+ + FK L L+++ L N+++
Sbjct: 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 4/159 (2%)
Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNN 283
SL LR + + F+ ++ +++ N +S + L +L +S
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183
Query: 284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNL 343
G D + +L L L N + + ++ L L L +N+++ GSL L
Sbjct: 184 LTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240
Query: 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ 382
+++ L L N+L S++P L+ L+ V L N +++
Sbjct: 241 PTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITK 278
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 75/201 (37%), Gaps = 22/201 (10%)
Query: 275 VFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG 334
LDL N+ D + L L L N S F+ L+ L +S N L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV- 115
Query: 335 SIPGSLGNLTSIKSLDLSFNRLESKIPRA-FKRLRHLRSVNLSGNKLSQ----------- 382
IP +L +S+ L + NR+ K+P+ F LR++ + + GN L
Sbjct: 116 EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 383 -----EISQV-LDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH 436
IS+ L L L L +N + + + + L L L N I
Sbjct: 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 437 IPLSLGQLSSLRYLDVSTNNL 457
SL L +LR L + N L
Sbjct: 233 ENGSLSFLPTLRELHLDNNKL 253
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 25/181 (13%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD-------------------S 262
L +L TL + ISP +FA L L +S NQ + +
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 134
Query: 263 SIVNQVL-GLVNLVFLDLSTNNFQ--GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKF 319
+ V GL ++ ++L TN + G A Q L ++ ++ + ++ +P
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPP- 192
Query: 320 IDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNK 379
L L L N++ SL L ++ L LSFN + + + HLR ++L+ NK
Sbjct: 193 -SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 380 L 380
L
Sbjct: 252 L 252
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 76/209 (36%), Gaps = 41/209 (19%)
Query: 288 VPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347
VP + T+L LDL N + F +L L L N++ PG+ L ++
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 348 SLDLSFNRLE---SKIPRAFKRLR------------------HLRSVNLSGNKLSQ---- 382
L LS N+L+ K+P+ + LR + V L N L
Sbjct: 104 RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163
Query: 383 ----EISQVLDMFSACASNV----------LESLDLSNNTLFGLLTNQIGNFKNLDSLDL 428
+ + L +N+ L L L N + + + NL L L
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 429 SFNNISGHIPLSLGQLSSLRYLDVSTNNL 457
SFN+IS SL LR L ++ N L
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 25/181 (13%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD-------------------S 262
L +L TL + ISP +FA L L +S NQ + +
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 134
Query: 263 SIVNQVL-GLVNLVFLDLSTNNFQ--GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKF 319
+ V GL ++ ++L TN + G A Q L ++ ++ + ++ +P
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPP- 192
Query: 320 IDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNK 379
L L L N++ SL L ++ L LSFN + + + HLR ++L+ NK
Sbjct: 193 -SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 380 L 380
L
Sbjct: 252 L 252
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 84/227 (37%), Gaps = 44/227 (19%)
Query: 288 VPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347
VP + T+L LDL N + F +L L L N++ PG+ L ++
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 348 SLDLSFNRLE---SKIPRAFKRLR------------------HLRSVNLSGNKLSQ---- 382
L LS N+L+ K+P+ + LR + V L N L
Sbjct: 104 RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163
Query: 383 ----EISQVLDMFSACASNV----------LESLDLSNNTLFGLLTNQIGNFKNLDSLDL 428
+ + L +N+ L L L N + + + NL L L
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 429 SFNNISGHIPLSLGQLSSLRYLDVSTNNL---NGTLSENHFANLTKL 472
SFN+IS SL LR L ++ N L G L+++ + + L
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTN 282
S + L S L H+ SF +F L LD+S + +I + L +L L L+ N
Sbjct: 31 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGN 88
Query: 283 NFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLG 341
Q A +SLQ L + +S L+ L++++N +Q +P
Sbjct: 89 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 148
Query: 342 NLTSIKSLDLSFNRLES 358
NLT+++ LDLS N+++S
Sbjct: 149 NLTNLEHLDLSSNKIQS 165
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ--- 333
LDLS N + + + LQ LDLSR + + L L L+ N +Q
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 334 -GSIPG--------------------SLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLR 371
G+ G +G+L ++K L+++ N ++S K+P F L +L
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 372 SVNLSGNKL 380
++LS NK+
Sbjct: 155 HLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTN 282
S + L S L H+ SF +F L LD+S + +I + L +L L L+ N
Sbjct: 30 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGN 87
Query: 283 NFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLG 341
Q A +SLQ L + +S L+ L++++N +Q +P
Sbjct: 88 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 147
Query: 342 NLTSIKSLDLSFNRLES 358
NLT+++ LDLS N+++S
Sbjct: 148 NLTNLEHLDLSSNKIQS 164
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ--- 333
LDLS N + + + LQ LDLSR + + L L L+ N +Q
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 334 -GSIPG--------------------SLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLR 371
G+ G +G+L ++K L+++ N ++S K+P F L +L
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 372 SVNLSGNKL 380
++LS NK+
Sbjct: 154 HLDLSSNKI 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQ 293
L H+ SF +F L LD+S + +I + L +L L L+ N Q A
Sbjct: 41 LRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 98
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLS 352
+SLQ L + +S L+ L++++N +Q +P NLT+++ LDLS
Sbjct: 99 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 353 FNRLES 358
N+++S
Sbjct: 159 SNKIQS 164
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ--- 333
LDLS N + + + LQ LDLSR + + L L L+ N +Q
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 334 -GSIPG--------------------SLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLR 371
G+ G +G+L ++K L+++ N ++S K+P F L +L
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 372 SVNLSGNKL 380
++LS NK+
Sbjct: 154 HLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQ 293
L H+ SF +F L LD+S + +I + L +L L L+ N Q A
Sbjct: 40 LRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLS 352
+SLQ L + +S L+ L++++N +Q +P NLT+++ LDLS
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 353 FNRLES 358
N+++S
Sbjct: 158 SNKIQS 163
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ--- 333
LDLS N + + + LQ LDLSR + + L L L+ N +Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 334 -GSIPG--------------------SLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLR 371
G+ G +G+L ++K L+++ N ++S K+P F L +L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 372 SVNLSGNKL 380
++LS NK+
Sbjct: 153 HLDLSSNKI 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 235 LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQ 293
L H+ SF +F L LD+S + +I + L +L L L+ N Q A
Sbjct: 42 LRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 99
Query: 294 NSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLS 352
+SLQ L + +S L+ L++++N +Q +P NLT+++ LDLS
Sbjct: 100 GLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 353 FNRLES 358
N+++S
Sbjct: 160 SNKIQS 165
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ--- 333
LDLS N + + + LQ LDLSR + + L L L+ N +Q
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 334 -GSIPG--------------------SLGNLTSIKSLDLSFNRLES-KIPRAFKRLRHLR 371
G+ G +G+L ++K L+++ N ++S K+P F L +L
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 372 SVNLSGNKL 380
++LS NK+
Sbjct: 155 HLDLSSNKI 163
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST 281
L++L L + ++PL N + + L++S N + V+ + GL ++ LDL++
Sbjct: 62 LNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKN---VSAIAGLQSIKTLDLTS 116
Query: 282 NNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG 341
P + ++LQ L L N ++ P +L+YLS+ ++ P L
Sbjct: 117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA 170
Query: 342 NLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLS 381
NL+ + +L N++ P A L +L V+L N++S
Sbjct: 171 NLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQIS 208
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 24/184 (13%)
Query: 289 PDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKS 348
P QN L L L RN SS F+ L LS+S N L+ + TS+++
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169
Query: 349 LDLSFNRLE----SKIPRAFKRLRHLRSVNLSGNKLSQ-EISQVLDMFSACASNV----- 398
L LS NRL S IP F N+S N LS I ++ A +++
Sbjct: 170 LQLSSNRLTHVDLSLIPSLFH-------ANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222
Query: 399 -----LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
L L L +N L T + N+ L +DLS+N + + ++ L L +S
Sbjct: 223 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280
Query: 454 TNNL 457
N L
Sbjct: 281 NNRL 284
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 16/103 (15%)
Query: 298 LQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE 357
+Q+LD+S F+ +LEYL LS+N+L + S ++K LDLSFN +
Sbjct: 57 IQYLDISVFKFNQ----------ELEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFD 103
Query: 358 S-KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVL 399
+ I + F + L+ + LS L E S VL + S VL
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHL--EKSSVLPIAHLNISKVL 144
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQ--GSIPGSLGNLTSIKSLDLSFNRLE 357
HLD S N + +V + +LE L L N+L+ I + S++ LD+S N +
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 358 SKIPRA-FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQ 416
+ + L S+N+S N L+ D C ++ LDL +N + + Q
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILT-------DTIFRCLPPRIKVLDLHSNKIKS-IPKQ 439
Query: 417 IGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTN 455
+ + L L+++ N + +L+SL+ + + TN
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 222 LHSLETLRFSGCLLHHISPLS--FANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDL 279
L LETL L +S ++ SL LDIS N + +L+ L++
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 280 STNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGS 339
S+N + + ++ LDL N S +P K L+ L+++ N+L+ G
Sbjct: 407 SSNILTDTIFRCL--PPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGI 463
Query: 340 LGNLTSIKSLDLSFNRLESKIPR 362
LTS++ + L N + PR
Sbjct: 464 FDRLTSLQKIWLHTNPWDCSCPR 486
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 30/170 (17%)
Query: 234 LLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ--GAVPDA 291
++H + P + S + LD S+N D+ N L L L L N + + +
Sbjct: 314 MVHMLCP---SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEM 369
Query: 292 IQNSTSLQHLDLSRNHFSSSVPD----WFNKFIDL-------------------EYLSLS 328
SLQ LD+S+N S W + L + L L
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429
Query: 329 YNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
N+++ SIP + L +++ L+++ N+L+S F RL L+ + L N
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 240 PLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ 299
P S ++++L LD+S N + L NL L LS N+ +A +L+
Sbjct: 34 PQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91
Query: 300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK 359
+LDLS NH + F+ LE L L N + + ++ ++ L LS N++ S+
Sbjct: 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SR 150
Query: 360 IP----RAFKRLRHLRSVNLSGNKLSQ 382
P + +L L ++LS NKL +
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKK 177
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 402 LDLSNNTLFGLLTNQI-GNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460
LDLS+N L L NL SL LS N+++ + + +LRYLD+S+N+L+ T
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-T 102
Query: 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNH 520
L E F++L L N +V+ V ++ QLQ + LS I +FP L+ +
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGN 160
Query: 521 ----LIYLDLSNSSIS 532
L+ LDLS++ +
Sbjct: 161 KLPKLMLLDLSSNKLK 176
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 7/178 (3%)
Query: 207 VDLSKTSDGPLITNSLH--SLETLRFSGCLLHHISP----LSFANFSSLVTLDISDNQFA 260
+L+ T+D + L ++ ++ C+L +P L + S TL +
Sbjct: 52 CNLTDTTDYQQLPKKLRIGEVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLG 111
Query: 261 DSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFI 320
+ + L L +T + + + +L HL+L R + F+
Sbjct: 112 MNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLEL-RANIEEMPSHLFDDLE 170
Query: 321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGN 378
+LE + N+L+ G G + +K L+L+ N+L+S F RL L+ + L N
Sbjct: 171 NLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 24/184 (13%)
Query: 289 PDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKS 348
P QN L L L RN SS F+ L LS+S N L+ + TS+++
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175
Query: 349 LDLSFNRLE----SKIPRAFKRLRHLRSVNLSGNKLSQ-EISQVLDMFSACASNV----- 398
L LS NRL S IP F N+S N LS I ++ A +++
Sbjct: 176 LQLSSNRLTHVDLSLIPSLF-------HANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228
Query: 399 -----LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVS 453
L L L +N L T + N+ L +DLS+N + + ++ L L +S
Sbjct: 229 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286
Query: 454 TNNL 457
N L
Sbjct: 287 NNRL 290
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 394 CASNVLESLDLSNNTLFGLLTNQIGNFKNLDS---LDLSFNNISGH--IPLSLGQLSSLR 448
C SN + +LDLS NT L NLD L++ N + L + Q L
Sbjct: 71 CTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLT 130
Query: 449 YLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLS 503
YL+ + N TL+E ++ T+L D N + K+ TP QL + S
Sbjct: 131 YLNCARN----TLTEIDVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCS 178
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 15/78 (19%)
Query: 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNL 457
LESL L NN + + + LD+L L N IS +PL+ L +L +L
Sbjct: 133 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY--------- 181
Query: 458 NGTLSENHFANLTKLVGF 475
LS+NH ++L L G
Sbjct: 182 ---LSKNHISDLRALAGL 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,983,497
Number of Sequences: 62578
Number of extensions: 897057
Number of successful extensions: 3208
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1857
Number of HSP's gapped (non-prelim): 692
length of query: 873
length of database: 14,973,337
effective HSP length: 107
effective length of query: 766
effective length of database: 8,277,491
effective search space: 6340558106
effective search space used: 6340558106
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)