Query 045210
Match_columns 873
No_of_seqs 841 out of 5200
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 10:55:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.1E-67 2E-71 643.1 45.0 579 36-854 27-606 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-56 2.7E-61 553.0 38.9 519 224-861 70-590 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 2.1E-39 4.6E-44 320.9 -8.1 489 244-855 42-541 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 2.9E-39 6.3E-44 319.9 -10.8 482 121-763 45-530 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.5E-34 3.3E-39 299.1 7.3 365 123-503 80-447 (873)
6 KOG4194 Membrane glycoprotein 100.0 2.5E-34 5.5E-39 297.4 7.0 364 104-482 85-451 (873)
7 KOG0618 Serine/threonine phosp 100.0 5.6E-35 1.2E-39 318.8 -4.0 439 249-855 23-465 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.4E-34 3E-39 315.7 -7.1 449 112-677 12-465 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.2E-32 9.2E-37 282.5 -3.9 364 399-831 9-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 7.8E-32 1.7E-36 280.6 -2.6 183 118-357 4-186 (1255)
11 PLN03210 Resistant to P. syrin 99.9 9.3E-22 2E-26 242.7 26.0 299 415-759 552-867 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.7E-21 3.7E-26 240.4 26.4 343 361-748 551-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 4.7E-22 1E-26 226.4 16.7 268 520-866 202-469 (788)
14 KOG4237 Extracellular matrix p 99.9 9.5E-24 2.1E-28 210.1 1.7 275 223-504 67-355 (498)
15 KOG4237 Extracellular matrix p 99.9 1.1E-23 2.3E-28 209.8 0.6 426 321-852 68-498 (498)
16 PRK15387 E3 ubiquitin-protein 99.8 1.2E-20 2.6E-25 215.0 16.8 264 499-841 205-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.3E-19 5E-24 206.3 14.1 247 519-831 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.5E-19 5.3E-24 206.0 12.1 231 497-760 180-410 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6E-18 1.3E-22 182.0 6.9 287 125-456 2-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.4E-18 9.6E-23 183.0 5.4 257 108-386 9-296 (319)
21 KOG0617 Ras suppressor protein 99.7 1.8E-18 4E-23 152.6 -3.4 183 636-858 29-215 (264)
22 KOG0617 Ras suppressor protein 99.7 3.5E-18 7.5E-23 150.9 -2.1 185 613-837 30-218 (264)
23 PLN03150 hypothetical protein; 99.4 3.5E-13 7.5E-18 155.4 12.3 131 33-185 367-505 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 2.2E-14 4.9E-19 150.3 -3.9 192 618-853 77-271 (722)
25 KOG0532 Leucine-rich repeat (L 99.3 5E-14 1.1E-18 147.7 -4.7 193 589-829 76-271 (722)
26 COG4886 Leucine-rich repeat (L 99.2 9.9E-12 2.1E-16 137.5 7.8 180 639-860 115-295 (394)
27 PLN03150 hypothetical protein; 99.2 1.8E-11 3.8E-16 141.4 8.0 112 715-859 420-532 (623)
28 KOG1909 Ran GTPase-activating 99.2 2.1E-12 4.5E-17 128.3 -0.7 254 115-381 24-311 (382)
29 KOG1909 Ran GTPase-activating 99.2 1.4E-11 3E-16 122.6 3.0 115 341-457 182-310 (382)
30 KOG3207 Beta-tubulin folding c 99.1 7.2E-12 1.6E-16 127.9 0.8 212 168-382 119-340 (505)
31 COG4886 Leucine-rich repeat (L 99.1 7.7E-11 1.7E-15 130.4 7.2 179 615-835 115-294 (394)
32 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3.1E-16 125.8 -1.1 165 118-285 118-284 (505)
33 PF14580 LRR_9: Leucine-rich r 99.0 3.1E-10 6.6E-15 106.6 4.4 36 292-327 109-147 (175)
34 PF14580 LRR_9: Leucine-rich r 99.0 3.9E-10 8.6E-15 105.9 4.0 110 117-236 15-126 (175)
35 KOG1259 Nischarin, modulator o 98.9 5.7E-10 1.2E-14 108.3 3.3 136 245-387 282-418 (490)
36 KOG1259 Nischarin, modulator o 98.9 4.5E-10 9.8E-15 109.0 2.0 134 684-857 280-414 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.8 1.8E-09 3.8E-14 127.2 4.5 107 120-233 544-652 (889)
38 KOG4658 Apoptotic ATPase [Sign 98.8 1.2E-08 2.7E-13 120.2 7.7 86 268-354 567-652 (889)
39 PF08263 LRRNT_2: Leucine rich 98.7 9E-09 1.9E-13 72.2 3.8 41 37-77 2-43 (43)
40 KOG0531 Protein phosphatase 1, 98.6 2.5E-09 5.4E-14 118.3 -2.2 129 119-260 70-199 (414)
41 KOG2120 SCF ubiquitin ligase, 98.6 5.2E-10 1.1E-14 108.6 -6.6 183 121-331 185-374 (419)
42 PF13855 LRR_8: Leucine rich r 98.6 2.2E-08 4.7E-13 77.1 3.2 60 795-854 2-61 (61)
43 KOG0531 Protein phosphatase 1, 98.6 8.8E-09 1.9E-13 114.0 0.3 170 545-750 73-245 (414)
44 PF13855 LRR_8: Leucine rich r 98.6 5.2E-08 1.1E-12 75.0 3.7 58 642-699 3-60 (61)
45 COG5238 RNA1 Ran GTPase-activa 98.4 5.4E-08 1.2E-12 93.7 0.5 95 117-212 26-135 (388)
46 KOG2120 SCF ubiquitin ligase, 98.3 2.9E-08 6.4E-13 96.7 -3.1 179 297-480 186-373 (419)
47 KOG2982 Uncharacterized conser 98.3 9.7E-08 2.1E-12 93.2 -0.0 91 118-210 68-159 (418)
48 KOG1859 Leucine-rich repeat pr 98.2 4.5E-08 9.8E-13 106.5 -5.3 180 633-856 102-293 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.1 7.4E-06 1.6E-10 79.3 8.1 88 221-308 28-132 (388)
50 KOG4579 Leucine-rich repeat (L 98.1 3.2E-07 7E-12 79.1 -1.1 35 689-725 78-112 (177)
51 PRK15386 type III secretion pr 98.1 6.4E-06 1.4E-10 87.2 7.6 138 660-828 48-187 (426)
52 KOG2982 Uncharacterized conser 98.1 1.7E-06 3.6E-11 84.8 2.8 183 399-581 73-263 (418)
53 KOG4579 Leucine-rich repeat (L 98.1 3.6E-07 7.8E-12 78.9 -1.6 82 666-750 29-113 (177)
54 KOG1859 Leucine-rich repeat pr 98.0 4E-07 8.7E-12 99.3 -2.7 22 216-237 102-123 (1096)
55 PRK15386 type III secretion pr 98.0 9.4E-06 2E-10 85.9 7.4 93 635-746 47-141 (426)
56 KOG4341 F-box protein containi 97.9 4.8E-07 1E-11 92.8 -5.4 301 121-428 138-459 (483)
57 KOG4341 F-box protein containi 97.8 3.2E-06 6.9E-11 86.9 -0.8 256 220-480 161-436 (483)
58 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.9E-10 55.5 2.5 35 796-831 3-37 (44)
59 PF12799 LRR_4: Leucine Rich r 97.7 3.6E-05 7.9E-10 53.9 3.0 37 147-184 2-38 (44)
60 KOG3665 ZYG-1-like serine/thre 97.6 2.4E-05 5.2E-10 90.4 2.1 107 193-303 169-282 (699)
61 KOG3665 ZYG-1-like serine/thre 97.5 5.6E-05 1.2E-09 87.4 3.4 84 246-331 147-231 (699)
62 KOG1644 U2-associated snRNP A' 97.5 0.00019 4.2E-09 66.9 5.8 82 200-285 45-126 (233)
63 KOG1644 U2-associated snRNP A' 97.3 0.00045 9.7E-09 64.5 5.5 90 167-260 61-153 (233)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00018 3.8E-09 70.3 1.9 98 110-212 32-131 (260)
65 KOG2123 Uncharacterized conser 96.8 8.7E-05 1.9E-09 72.4 -3.6 85 197-287 19-103 (388)
66 KOG1947 Leucine rich repeat pr 96.8 0.0002 4.3E-09 81.9 -1.5 114 169-284 187-307 (482)
67 KOG1947 Leucine rich repeat pr 96.6 0.0004 8.7E-09 79.4 -0.9 113 195-307 186-306 (482)
68 PF13306 LRR_5: Leucine rich r 96.6 0.0037 8.1E-08 56.6 5.6 97 269-370 32-128 (129)
69 KOG2739 Leucine-rich acidic nu 96.5 0.0012 2.7E-08 64.5 1.7 62 294-357 63-129 (260)
70 PF13306 LRR_5: Leucine rich r 96.3 0.0067 1.5E-07 54.9 5.7 81 614-697 10-90 (129)
71 KOG2123 Uncharacterized conser 95.9 0.00026 5.6E-09 69.1 -6.0 60 120-184 18-77 (388)
72 PF00560 LRR_1: Leucine Rich R 95.8 0.0036 7.7E-08 36.4 0.8 20 844-864 2-21 (22)
73 PF00560 LRR_1: Leucine Rich R 95.4 0.0049 1.1E-07 35.8 0.2 19 796-815 2-20 (22)
74 KOG4308 LRR-containing protein 95.0 0.00042 9.2E-09 76.7 -9.3 41 820-860 378-422 (478)
75 KOG4308 LRR-containing protein 94.4 0.0016 3.4E-08 72.3 -6.7 66 243-308 111-184 (478)
76 PF13504 LRR_7: Leucine rich r 89.8 0.2 4.3E-06 26.9 1.2 11 172-182 3-13 (17)
77 smart00370 LRR Leucine-rich re 87.3 0.45 9.8E-06 28.8 1.8 22 169-190 1-22 (26)
78 smart00369 LRR_TYP Leucine-ric 87.3 0.45 9.8E-06 28.8 1.8 22 169-190 1-22 (26)
79 KOG3864 Uncharacterized conser 86.1 0.14 3E-06 48.5 -1.4 34 225-258 103-136 (221)
80 KOG0473 Leucine-rich repeat pr 86.0 0.073 1.6E-06 51.2 -3.3 58 796-855 67-124 (326)
81 smart00369 LRR_TYP Leucine-ric 85.4 0.77 1.7E-05 27.7 2.2 21 688-709 2-22 (26)
82 smart00370 LRR Leucine-rich re 85.4 0.77 1.7E-05 27.7 2.2 21 688-709 2-22 (26)
83 PF13516 LRR_6: Leucine Rich r 83.5 0.44 9.5E-06 28.2 0.4 21 737-757 2-22 (24)
84 PF13516 LRR_6: Leucine Rich r 81.7 0.66 1.4E-05 27.4 0.7 15 688-702 2-16 (24)
85 KOG0473 Leucine-rich repeat pr 81.3 0.025 5.4E-07 54.2 -8.4 59 296-356 65-123 (326)
86 KOG3864 Uncharacterized conser 80.0 0.53 1.2E-05 44.7 -0.1 36 345-380 102-137 (221)
87 KOG4242 Predicted myosin-I-bin 73.8 22 0.00047 38.7 9.5 69 319-389 164-235 (553)
88 smart00364 LRR_BAC Leucine-ric 71.1 2.8 6E-05 25.3 1.3 12 796-807 4-15 (26)
89 smart00365 LRR_SD22 Leucine-ri 64.1 5.8 0.00013 24.1 1.8 15 170-184 2-16 (26)
90 KOG4242 Predicted myosin-I-bin 61.9 25 0.00054 38.3 7.1 15 121-135 165-179 (553)
91 smart00368 LRR_RI Leucine rich 44.6 18 0.00038 22.3 1.7 14 589-602 3-16 (28)
92 KOG3763 mRNA export factor TAP 43.6 12 0.00027 41.4 1.5 64 222-286 217-284 (585)
93 KOG3763 mRNA export factor TAP 34.7 30 0.00065 38.5 2.7 37 246-282 217-254 (585)
94 smart00367 LRR_CC Leucine-rich 25.8 42 0.00091 20.1 1.2 13 687-699 1-13 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.1e-67 Score=643.07 Aligned_cols=579 Identities=35% Similarity=0.582 Sum_probs=405.3
Q ss_pred CHHHHHHHHHhhhcCCCCCCCcCCCccCCCCCCccceeeEecCCCCcEEEEecCCCCCCCCCchhhhhccccceeeeccc
Q 045210 36 IESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINP 115 (873)
Q Consensus 36 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~ 115 (873)
.++|++||++||+++.+|.+.+.+|+ . +.+||.|.||+|++ .++|+.+++++. .+.|.+++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~-~-~~~~c~w~gv~c~~-~~~v~~L~L~~~----------------~i~~~~~~ 87 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN-S-SADVCLWQGITCNN-SSRVVSIDLSGK----------------NISGKISS 87 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC-C-CCCCCcCcceecCC-CCcEEEEEecCC----------------CccccCCh
Confidence 36899999999999988888889997 3 67899999999975 579999999985 67788888
Q ss_pred CccCCCCCCeecCCCCCCCCCCCCcccc-CCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCcccccc
Q 045210 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLG-SLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVS 194 (873)
Q Consensus 116 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 194 (873)
++..+++|++|+|++|.+.+. +|..+. .+++|++|+|++|.+++.+|. +.+++|++|++++|
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-------------- 150 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-------------- 150 (968)
T ss_pred HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC--------------
Confidence 888889999999998888765 666544 788888888888887776664 23444444444443
Q ss_pred CCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCC
Q 045210 195 HLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNL 274 (873)
Q Consensus 195 ~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 274 (873)
.+.+..|..++++++|++|++++|.+. +.+|..+.++++|
T Consensus 151 ---------------------------------------~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L 190 (968)
T PLN00113 151 ---------------------------------------MLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSL 190 (968)
T ss_pred ---------------------------------------cccccCChHHhcCCCCCEEECccCccc-ccCChhhhhCcCC
Confidence 333333444555555666666555554 4455555555566
Q ss_pred cEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCC
Q 045210 275 VFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354 (873)
Q Consensus 275 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 354 (873)
++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++.+++|++|++++|
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 66666666555555666666666666666666666556666666666666666666665555555666666666666666
Q ss_pred cCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccC
Q 045210 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS 434 (873)
Q Consensus 355 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 434 (873)
.+.+.+|..+..+++ |++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus 271 ~l~~~~p~~l~~l~~-----------------------------L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 271 KLSGPIPPSIFSLQK-----------------------------LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred eeeccCchhHhhccC-----------------------------cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 555555555554443 344444444444444555555566666666666666
Q ss_pred ccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchh
Q 045210 435 GHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQW 514 (873)
Q Consensus 435 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 514 (873)
+.+|..+..+++|+.|++++|.+.+.+|. +
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--------------------------------------------------~ 351 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPK--------------------------------------------------N 351 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCCh--------------------------------------------------H
Confidence 55555555666666666665555443332 1
Q ss_pred hhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEE
Q 045210 515 LLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLD 594 (873)
Q Consensus 515 l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ 594 (873)
+..+++|+.|++++|++.+.+|.. +..+++ ++.|+
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p~~------------------------~~~~~~---------------------L~~L~ 386 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIPEG------------------------LCSSGN---------------------LFKLI 386 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCChh------------------------HhCcCC---------------------CCEEE
Confidence 222222333333333332222222 222222 23333
Q ss_pred ccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCC
Q 045210 595 LSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGN 674 (873)
Q Consensus 595 l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 674 (873)
+++|.+.+.+|.. +..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|
T Consensus 387 l~~n~l~~~~p~~----~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 387 LFSNSLEGEIPKS----LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred CcCCEecccCCHH----HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence 3333333344443 233788899999999999899999999999999999999999988888888999999999999
Q ss_pred cccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccC
Q 045210 675 RFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP 754 (873)
Q Consensus 675 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 754 (873)
++.+.+|..+. .++|+.|++++|++++.+|..+.. +++|+.|++++|++.+.+|+.+..+++|+.|++++|.++|.+|
T Consensus 463 ~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 463 KFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGS-LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred eeeeecCcccc-cccceEEECcCCccCCccChhhhh-hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 99988887664 578999999999999889988875 8999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccC
Q 045210 755 RCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI 834 (873)
Q Consensus 755 ~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 834 (873)
..++.+++| +.|||++|+++|.+|..+.++++|+.|++++|+++|.+
T Consensus 541 ~~~~~l~~L---------------------------------~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 541 ASFSEMPVL---------------------------------SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred hhHhCcccC---------------------------------CEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 888877665 78999999999999999999999999999999999999
Q ss_pred CccccCCCCCCeEeccCCcc
Q 045210 835 PVNMGAMKSVEALDFSSNRL 854 (873)
Q Consensus 835 p~~l~~l~~L~~L~ls~N~l 854 (873)
|.. +.+..+....+.+|+.
T Consensus 588 p~~-~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 588 PST-GAFLAINASAVAGNID 606 (968)
T ss_pred CCc-chhcccChhhhcCCcc
Confidence 975 5566666777788863
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-56 Score=552.98 Aligned_cols=519 Identities=34% Similarity=0.552 Sum_probs=378.7
Q ss_pred CCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhc-CCCCCcEEEccCCcCCCCChhhhcCCCCCCEEE
Q 045210 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL-GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLD 302 (873)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 302 (873)
+++.|++++|.+.+..+..|..+++|++|++++|.+. +.+|..+. .+++|++|++++|.+++.+|. +.+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4556666666666666666666667777777766665 45555443 666677777777666665554 3456677777
Q ss_pred CCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 045210 303 LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ 382 (873)
Q Consensus 303 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 382 (873)
+++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 77776666666666667777777777776666666666667777777777776666666666666655444444444433
Q ss_pred hhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccC
Q 045210 383 EISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLS 462 (873)
Q Consensus 383 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 462 (873)
.+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|
T Consensus 227 -----------------------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 227 -----------------------------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred -----------------------------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 333344444444444444444444444444444444444444444444433
Q ss_pred hhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhc
Q 045210 463 ENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKS 542 (873)
Q Consensus 463 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~ 542 (873)
. .+.++++|+.|++++|.+. +.+|.++..+++|+.|++++|.+.+.+|..+ ..
T Consensus 278 ~-~l~~l~~L~~L~Ls~n~l~-------------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~ 330 (968)
T PLN00113 278 P-SIFSLQKLISLDLSDNSLS-------------------------GEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TS 330 (968)
T ss_pred h-hHhhccCcCEEECcCCeec-------------------------cCCChhHcCCCCCcEEECCCCccCCcCChhH-hc
Confidence 3 2344444444444433322 2244445555666666666666665555443 33
Q ss_pred CCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceE
Q 045210 543 LSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVL 621 (873)
Q Consensus 543 l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L 621 (873)
+++|+.|++++|.+.+.+| .+..+++| +.|++++|++++.+|..++. +++|+.|
T Consensus 331 l~~L~~L~L~~n~l~~~~p~~l~~~~~L---------------------~~L~Ls~n~l~~~~p~~~~~----~~~L~~L 385 (968)
T PLN00113 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNL---------------------TVLDLSTNNLTGEIPEGLCS----SGNLFKL 385 (968)
T ss_pred CCCCCEEECcCCCCcCcCChHHhCCCCC---------------------cEEECCCCeeEeeCChhHhC----cCCCCEE
Confidence 5566666666666665555 34444444 44445555555555655443 7889999
Q ss_pred eccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeec
Q 045210 622 NLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFV 701 (873)
Q Consensus 622 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 701 (873)
++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeee
Q 045210 702 GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVY 781 (873)
Q Consensus 702 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~ 781 (873)
+.+|..+. .++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|+.++++++|
T Consensus 466 ~~~p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L------------------ 525 (968)
T PLN00113 466 GGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL------------------ 525 (968)
T ss_pred eecCcccc--cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC------------------
Confidence 99998764 7899999999999999999999999999999999999999999999887776
Q ss_pred cccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccccc
Q 045210 782 KKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKN 861 (873)
Q Consensus 782 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 861 (873)
+.|+|++|.++|.+|..++.+++|++|+|++|+++|.+|..++.+++|+.+|+++|+++|.+|..
T Consensus 526 ---------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 526 ---------------VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred ---------------CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999965
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-39 Score=320.86 Aligned_cols=489 Identities=26% Similarity=0.396 Sum_probs=300.0
Q ss_pred CCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcC
Q 045210 244 ANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLE 323 (873)
Q Consensus 244 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 323 (873)
..-..|+.+.+++|.+. .+.+.+.++..|.++++.+|++. ..|.+++.+..++.++.++|.+. .+|+.++.+.+|+
T Consensus 42 W~qv~l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV 117 (565)
T ss_pred hhhcchhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence 33445666666666653 34455566666666666666666 55666666666666666666666 5666666666666
Q ss_pred EEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEE
Q 045210 324 YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLD 403 (873)
Q Consensus 324 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~ 403 (873)
.+++++|.+. .+|+.++.+-.+..++..+|+++. .|..+..+.++..+++.+|++...++....+ ..|+++|
T Consensus 118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m------~~L~~ld 189 (565)
T KOG0472|consen 118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIAM------KRLKHLD 189 (565)
T ss_pred hhhcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHHH------HHHHhcc
Confidence 7777666666 455566666666666666666653 4555566665555666665555554444332 1155555
Q ss_pred ccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeee
Q 045210 404 LSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLV 483 (873)
Q Consensus 404 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 483 (873)
...|-+.. +|+.++.+.+|..|++..|++. ..| .|..|..|++++++.|++. .+|.....
T Consensus 190 ~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~---------------- 249 (565)
T KOG0472|consen 190 CNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLK---------------- 249 (565)
T ss_pred cchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhc----------------
Confidence 55544432 4444555555555555555555 344 4555555555555555554 33433333
Q ss_pred ccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCc
Q 045210 484 LKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDL 563 (873)
Q Consensus 484 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~ 563 (873)
+++++..||+++|++. +.|+.+.. +++|++||+++|.+++..+.+
T Consensus 250 ---------------------------------~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 250 ---------------------------------HLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred ---------------------------------ccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccccCCccc
Confidence 4555666666666665 56666544 567888888888888777788
Q ss_pred cccCCCCeEeCCCCCCCCC---CCCCC--CCCcEEE--ccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhh
Q 045210 564 NDAAQLETLDLSSNSLSGP---LPLIP--SSLTTLD--LSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW 636 (873)
Q Consensus 564 ~~~~~L~~L~l~~n~l~~~---~~~~~--~~L~~L~--l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l 636 (873)
+++ +|+.|.+.+|++... +-... .-|++|. +.+-.++.. +. .+-..-+ ...+..| ..
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s--e~--------~~e~~~t----~~~~~~~-~~ 358 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS--EG--------GTETAMT----LPSESFP-DI 358 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC--cc--------cccccCC----CCCCccc-ch
Confidence 888 888888888876421 10000 0011110 000000000 00 0000000 0001111 12
Q ss_pred hccccCcEEEcCCCcCccCCcccccCCCC---ccEEEccCCcccccCCcccccCCCCcE-EEccCCeecccCChhHHhhc
Q 045210 637 MNWSFLFFLHLGENDFTGNLPTSLGTLSS---LQILHLRGNRFSGKIPVSLQNCTELRL-FDISENEFVGNIPTWIGERL 712 (873)
Q Consensus 637 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~~~p~~l~~l~~L~~-L~Ls~n~l~~~ip~~~~~~l 712 (873)
..+.+.+.|++++-+++ .+|+....-.. ....++++|++. .+|..+..+..+.+ +++++|.+. -+|..+.. +
T Consensus 359 ~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~-l 434 (565)
T KOG0472|consen 359 YAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQ-L 434 (565)
T ss_pred hhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHh-h
Confidence 23345566666666666 45544332222 566777777776 66766666655554 445555544 67777765 8
Q ss_pred ccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCC
Q 045210 713 SGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGY 792 (873)
Q Consensus 713 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (873)
++|..|++++|.+. .+|.+++.+..|+.||++.|.|. .+|+++..+..+
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l----------------------------- 483 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL----------------------------- 483 (565)
T ss_pred hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH-----------------------------
Confidence 88888888887766 77888888988999999999887 888888766554
Q ss_pred CccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210 793 PYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ 855 (873)
Q Consensus 793 ~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 855 (873)
+.+-.++|++...-|..+.++.+|.+|||.+|.+. .||..+++|++|+.|++++|+|.
T Consensus 484 ----Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 484 ----ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ----HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 45556678887544555999999999999999998 78999999999999999999998
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.9e-39 Score=319.88 Aligned_cols=482 Identities=28% Similarity=0.402 Sum_probs=300.1
Q ss_pred CCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCc
Q 045210 121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK 200 (873)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~ 200 (873)
.-++.+++++|.+.. +.+.+.++..|.+|++++|+++ ..|.+++.+..++.++.++|++..+|.. +..+.+|+
T Consensus 45 v~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~----i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQ----IGSLISLV 117 (565)
T ss_pred cchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHH----Hhhhhhhh
Confidence 446667777777664 4455677777777777777765 4566677777777777777777666654 44444555
Q ss_pred EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEcc
Q 045210 201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS 280 (873)
Q Consensus 201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 280 (873)
+++.++|.+... ++.++.+-.|+.++..+|++ .+.|+.+..+.+|..+++.
T Consensus 118 ~l~~s~n~~~el---------------------------~~~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~l~~~ 168 (565)
T KOG0472|consen 118 KLDCSSNELKEL---------------------------PDSIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSKLDLE 168 (565)
T ss_pred hhhccccceeec---------------------------CchHHHHhhhhhhhcccccc--ccCchHHHHHHHHHHhhcc
Confidence 555554444433 33455666677777777777 3567777788888888888
Q ss_pred CCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcc
Q 045210 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360 (873)
Q Consensus 281 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 360 (873)
+|++....|+ .-+++.|+++|...|.+. .+|..++.+.+|..|++..|++. .+| .|++|..|++++++.|+++. +
T Consensus 169 ~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-l 243 (565)
T KOG0472|consen 169 GNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-L 243 (565)
T ss_pred ccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-h
Confidence 8888744444 444888899988888776 68888888889999999999887 666 68888899999998888874 4
Q ss_pred hhh-hhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccc
Q 045210 361 PRA-FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPL 439 (873)
Q Consensus 361 ~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 439 (873)
|.+ .+.++++..|++.+|+++ . .|+.+..+++|.+||+++|.++ ..|.
T Consensus 244 pae~~~~L~~l~vLDLRdNklk-----------------------------e-~Pde~clLrsL~rLDlSNN~is-~Lp~ 292 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLK-----------------------------E-VPDEICLLRSLERLDLSNNDIS-SLPY 292 (565)
T ss_pred HHHHhcccccceeeeccccccc-----------------------------c-CchHHHHhhhhhhhcccCCccc-cCCc
Confidence 444 446665555555555443 3 4566777788888888888888 5777
Q ss_pred cccCCCCCCEEEccCccCCcccChhhhhccc--ccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhc
Q 045210 440 SLGQLSSLRYLDVSTNNLNGTLSENHFANLT--KLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLS 517 (873)
Q Consensus 440 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 517 (873)
+++++ .|+.|.+.+|++. .+....+..-+ -|+++.- .+... .++.-. ++.
T Consensus 293 sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs---~~~~d---------------glS~se-~~~------- 344 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRS---KIKDD---------------GLSQSE-GGT------- 344 (565)
T ss_pred ccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHH---hhccC---------------CCCCCc-ccc-------
Confidence 88888 8888888888875 33322111000 0000000 00000 000000 000
Q ss_pred CCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccC
Q 045210 518 QNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSS 597 (873)
Q Consensus 518 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 597 (873)
.-.+..| .+..|+.....+ .+.|+++.
T Consensus 345 ------------e~~~t~~--------------------~~~~~~~~~~i~---------------------tkiL~~s~ 371 (565)
T KOG0472|consen 345 ------------ETAMTLP--------------------SESFPDIYAIIT---------------------TKILDVSD 371 (565)
T ss_pred ------------cccCCCC--------------------CCcccchhhhhh---------------------hhhhcccc
Confidence 0000000 011112222222 33333333
Q ss_pred ccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcE-EEcCCCcCccCCcccccCCCCccEEEccCCcc
Q 045210 598 NFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFF-LHLGENDFTGNLPTSLGTLSSLQILHLRGNRF 676 (873)
Q Consensus 598 n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~-L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 676 (873)
-+++. +|...+++ +.-.-...++++.|++. ++|..+..+..+.. +.+++|.+. -+|..+..+++|..|++++|.+
T Consensus 372 ~qlt~-VPdEVfea-~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~L 447 (565)
T KOG0472|consen 372 KQLTL-VPDEVFEA-AKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLL 447 (565)
T ss_pred ccccc-CCHHHHHH-hhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchh
Confidence 33332 33333221 11123566777777776 66666666655544 344444443 5666677777777777777766
Q ss_pred cccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChh
Q 045210 677 SGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC 756 (873)
Q Consensus 677 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 756 (873)
. .+|..++.+..|+.||++.|+|. .+|..+.. +..++.+-.++|++....|..+.++.+|..|||.+|.+. .||+.
T Consensus 448 n-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~-lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~ 523 (565)
T KOG0472|consen 448 N-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE-LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI 523 (565)
T ss_pred h-hcchhhhhhhhhheecccccccc-cchHHHhh-HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence 5 67777777777777777777776 67777765 666666667777777666666777777777777777776 77777
Q ss_pred hhhhhcC
Q 045210 757 INNLAGM 763 (873)
Q Consensus 757 l~~l~~L 763 (873)
+|+++++
T Consensus 524 LgnmtnL 530 (565)
T KOG0472|consen 524 LGNMTNL 530 (565)
T ss_pred hccccce
Confidence 7777766
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-34 Score=299.07 Aligned_cols=365 Identities=28% Similarity=0.349 Sum_probs=271.3
Q ss_pred CCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEE
Q 045210 123 LIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHL 202 (873)
Q Consensus 123 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L 202 (873)
-+.||+++|.++.+ -+.+|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|+++..+. ++-++.|+.|
T Consensus 80 t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~---L~~l~alrsl 154 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEE---LSALPALRSL 154 (873)
T ss_pred eeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHH---HHhHhhhhhh
Confidence 45688888888776 4667778888888888887765 56766666667888888888887776664 4667778888
Q ss_pred eCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCC
Q 045210 203 DLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTN 282 (873)
Q Consensus 203 ~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 282 (873)
||+.|.++.++.. .+..-.++++|+|++|+|+.+....|..+.+|..|.|+.|+++ .--+..+.++++|+.|+|..|
T Consensus 155 DLSrN~is~i~~~--sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 155 DLSRNLISEIPKP--SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhchhhcccCC--CCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccc
Confidence 8888888777532 3344467888888888888888888888888888888888886 333445566888888888888
Q ss_pred cCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchh
Q 045210 283 NFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPR 362 (873)
Q Consensus 283 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 362 (873)
++.-.--..|.++++|+.|.+..|.+...-...|..+.++++|+|+.|+++..-..++-+++.|+.|++++|.|..+.++
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 87643355677888888888888887766666677788888888888888766667777888888888888888877778
Q ss_pred hhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcccc---c
Q 045210 363 AFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP---L 439 (873)
Q Consensus 363 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~ 439 (873)
.+..+++|+.|+|+.|+++...+..+..+.. |++|.|++|++.......|..+++|++|||+.|.+...+. .
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-----Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQ-----LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHH-----hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence 8888888888888888888877777766543 8888888888877666677778888888888887765443 3
Q ss_pred cccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEecc
Q 045210 440 SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLS 503 (873)
Q Consensus 440 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 503 (873)
.|..+++|+.|.+.+|++. .|+..+|.+++.|++|++.+|.+... -+..+.+. .|++|.+.
T Consensus 387 ~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSI-q~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASI-QPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceee-cccccccc-hhhhhhhc
Confidence 4667888888888888886 77777888888888888888876543 22333333 56665544
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-34 Score=297.44 Aligned_cols=364 Identities=25% Similarity=0.327 Sum_probs=322.3
Q ss_pred ccccceeeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCC
Q 045210 104 YERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLG 183 (873)
Q Consensus 104 ~~~~~~~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 183 (873)
+..+.+...-+..|.++++|+.+++.+|.++. ||.+.+...+|+.|+|.+|.++..-..+++.++.||.|||+.|.|+
T Consensus 85 lsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 85 LSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred ccccccccCcHHHHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence 33345555555678899999999999999985 7998888899999999999999888889999999999999999999
Q ss_pred CCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCc
Q 045210 184 GLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSS 263 (873)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 263 (873)
.++...| .+-.++++|+|++|.|+.+... .+..+.+|.+|.|+.|+++..++..|.++++|+.|+|..|++. ..
T Consensus 163 ~i~~~sf---p~~~ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-iv 236 (873)
T KOG4194|consen 163 EIPKPSF---PAKVNIKKLNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IV 236 (873)
T ss_pred cccCCCC---CCCCCceEEeeccccccccccc--cccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-ee
Confidence 9988764 5667899999999999998654 4567789999999999999999999999999999999999986 23
Q ss_pred hhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCC
Q 045210 264 IVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNL 343 (873)
Q Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 343 (873)
-.-.+.++++|+.|.+..|.+...-..+|..+.++++|+|..|++...-..|+.+++.|+.|++++|.|...-++.+.-+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 24578899999999999999997777889999999999999999997778899999999999999999998889999999
Q ss_pred CCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCcccc---ccCCC
Q 045210 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN---QIGNF 420 (873)
Q Consensus 344 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~l~~l 420 (873)
++|++|+|++|+++...+..|..+..|++|+|++|.+.......|..... |++|||+.|.+++.+.+ .|..+
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss-----L~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS-----LHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh-----hhhhcCcCCeEEEEEecchhhhccc
Confidence 99999999999999999999999999999999999999888777776643 99999999999876543 46779
Q ss_pred CCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCee
Q 045210 421 KNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482 (873)
Q Consensus 421 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~ 482 (873)
+.|+.|++.+|++......+|..++.|++|+|.+|.+. .|...+|..+ .|+.|.+....+
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia-SIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA-SIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcce-eecccccccc-hhhhhhhcccce
Confidence 99999999999999666678999999999999999997 6777789888 888887765444
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=5.6e-35 Score=318.78 Aligned_cols=439 Identities=29% Similarity=0.419 Sum_probs=245.8
Q ss_pred ccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEcc
Q 045210 249 LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLS 328 (873)
Q Consensus 249 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 328 (873)
++.|++..|.+-+.. .+.+.+..+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+. ..|....++.+|+++.|.
T Consensus 23 ~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 666666666554322 344555556777777777665 56666777777777777777766 566667777777777777
Q ss_pred CCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcc
Q 045210 329 YNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNT 408 (873)
Q Consensus 329 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 408 (873)
+|.+. ..|..+..+.+|++|+++.|.+. .+|..+..+..+..+..++| .
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N-----------------------------~ 148 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNN-----------------------------E 148 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcc-----------------------------h
Confidence 77766 67777777777777777777775 35666666655444444444 1
Q ss_pred cCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccC
Q 045210 409 LFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVS 488 (873)
Q Consensus 409 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 488 (873)
.... ++... .+.+++..|.+.+.++..+..++. .|+|.+|.+. .. .+..+..|+.+....|.+...
T Consensus 149 ~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l--- 214 (1081)
T KOG0618|consen 149 KIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSEL--- 214 (1081)
T ss_pred hhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccceE---
Confidence 1111 11111 666666666666666666665555 5777777654 11 344445555444444332211
Q ss_pred CCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCC
Q 045210 489 PSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQ 568 (873)
Q Consensus 489 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 568 (873)
+++ .++++.|+.+.|.++
T Consensus 215 ------------------------------------~~~---------------g~~l~~L~a~~n~l~----------- 232 (1081)
T KOG0618|consen 215 ------------------------------------EIS---------------GPSLTALYADHNPLT----------- 232 (1081)
T ss_pred ------------------------------------Eec---------------CcchheeeeccCcce-----------
Confidence 000 123334444444333
Q ss_pred CCeEeCCCCCCCCCCCC-CCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEc
Q 045210 569 LETLDLSSNSLSGPLPL-IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHL 647 (873)
Q Consensus 569 L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 647 (873)
...+. .+.++++++++.|++++ +|++++. +.+|+.++..+|+++ .+|..+...++|+.|.+
T Consensus 233 ------------~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~----~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 233 ------------TLDVHPVPLNLQYLDISHNNLSN-LPEWIGA----CANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred ------------eeccccccccceeeecchhhhhc-chHHHHh----cccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 22221 24566666666666654 3354443 677777777777774 66666777777777777
Q ss_pred CCCcCccCCcccccCCCCccEEEccCCcccccCCcc-cccCC-CCcEEEccCCeecccCChhHHhhcccCcEEEccCCee
Q 045210 648 GENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS-LQNCT-ELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF 725 (873)
Q Consensus 648 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l 725 (873)
..|.+. -+|.....+++|++|+|..|++. ..|.. +.-.. +|..|+.+.|++. ..|..-....+.|+.|++.+|.+
T Consensus 295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcc
Confidence 777776 45555666777777777777766 33332 22222 2455555555554 44433333445555566666665
Q ss_pred eeeCCcccCCCCCCCEEeCCCCccccccCh-hhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCC
Q 045210 726 HGFFPPELCGLASLKILDLSSNNLTGVIPR-CINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSAN 804 (873)
Q Consensus 726 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n 804 (873)
+....+.+.+...|+.|+|++|.+. ++|. ++.++..| ++|+||+|
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~L---------------------------------eeL~LSGN 417 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEEL---------------------------------EELNLSGN 417 (1081)
T ss_pred cccchhhhccccceeeeeecccccc-cCCHHHHhchHHh---------------------------------HHHhcccc
Confidence 5555555555556666666666555 3343 33333333 45555555
Q ss_pred cccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210 805 YFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ 855 (873)
Q Consensus 805 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 855 (873)
+++ .+|..+.++..|++|...+|++. ..| .+.++++|+.+|+|.|+++
T Consensus 418 kL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 418 KLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 555 45555555555555555555554 344 4445555555555555554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-34 Score=315.71 Aligned_cols=449 Identities=27% Similarity=0.347 Sum_probs=223.8
Q ss_pred ecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccc
Q 045210 112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFG 191 (873)
Q Consensus 112 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~ 191 (873)
.||..+..-..+..|++..|.+...+ -+++.+.-+|+.||+++|.+ +..|..+..+.+|+.|+++.|.|..+|..
T Consensus 12 ~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~~vp~s--- 86 (1081)
T KOG0618|consen 12 LIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIRSVPSS--- 86 (1081)
T ss_pred ccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHhhCchh---
Confidence 34444444445666666666554432 23444444566666666654 34555566666666666666655554422
Q ss_pred cccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCC
Q 045210 192 WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGL 271 (873)
Q Consensus 192 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 271 (873)
+. ++.+|+++.|.+|.+... |..+..+++|++||+++|.+ +.+|..+..+
T Consensus 87 -~~--------------------------~~~~l~~lnL~~n~l~~l-P~~~~~lknl~~LdlS~N~f--~~~Pl~i~~l 136 (1081)
T KOG0618|consen 87 -CS--------------------------NMRNLQYLNLKNNRLQSL-PASISELKNLQYLDLSFNHF--GPIPLVIEVL 136 (1081)
T ss_pred -hh--------------------------hhhcchhheeccchhhcC-chhHHhhhcccccccchhcc--CCCchhHHhh
Confidence 33 334444444444433322 45566677777777777777 4566666667
Q ss_pred CCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeC
Q 045210 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDL 351 (873)
Q Consensus 272 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 351 (873)
..+..+..++|..... ++... ++.+++..|.+.+.++..+..+.. .|+|.+|.+. ...+..+.+|+.+..
T Consensus 137 t~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c 206 (1081)
T KOG0618|consen 137 TAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHC 206 (1081)
T ss_pred hHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhh
Confidence 7777777776622211 22212 666666666666666666655555 5677777665 123556666666666
Q ss_pred CCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCC
Q 045210 352 SFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFN 431 (873)
Q Consensus 352 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 431 (873)
..|++.... -.-++++.|+.+.|.++....... +..++.++++.|++++. |++++.+++|+.++..+|
T Consensus 207 ~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p~-------p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 207 ERNQLSELE----ISGPSLTALYADHNPLTTLDVHPV-------PLNLQYLDISHNNLSNL-PEWIGACANLEALNANHN 274 (1081)
T ss_pred hhcccceEE----ecCcchheeeeccCcceeeccccc-------cccceeeecchhhhhcc-hHHHHhcccceEecccch
Confidence 666655321 112455555555555542111110 02245555555554442 244455555555555555
Q ss_pred ccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCc
Q 045210 432 NISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQF 511 (873)
Q Consensus 432 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 511 (873)
+++ .+|..+....+|+.|.+..|.+. . +
T Consensus 275 ~l~-~lp~ri~~~~~L~~l~~~~nel~-y--------------------------------------------------i 302 (1081)
T KOG0618|consen 275 RLV-ALPLRISRITSLVSLSAAYNELE-Y--------------------------------------------------I 302 (1081)
T ss_pred hHH-hhHHHHhhhhhHHHHHhhhhhhh-h--------------------------------------------------C
Confidence 543 44444444444444444444443 2 2
Q ss_pred chhhhcCCcccEEEccCCCCCcccChhHHhcCCC-CcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCC---
Q 045210 512 PQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQ-INYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLI--- 586 (873)
Q Consensus 512 ~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~-L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~--- 586 (873)
|......+.|+.|++..|++. .+|+.++..... ++.++.+.|++..... +-...+.|+.|++.+|.++......
T Consensus 303 p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred CCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 333444556666666666664 455555544333 6666666666553322 2223344555555555555432211
Q ss_pred CCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCc
Q 045210 587 PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSL 666 (873)
Q Consensus 587 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 666 (873)
...|+.|++++|.+... |.. .+.++..|++|++|+|+++ .+|+++..+..|+.|...+|++. .+| .+..++.|
T Consensus 382 ~~hLKVLhLsyNrL~~f-pas---~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSF-PAS---KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL 454 (1081)
T ss_pred ccceeeeeecccccccC-CHH---HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence 33444444444443321 111 1223444444444444444 34444444444444444444444 333 34444444
Q ss_pred cEEEccCCccc
Q 045210 667 QILHLRGNRFS 677 (873)
Q Consensus 667 ~~L~L~~n~l~ 677 (873)
+.+|++.|+++
T Consensus 455 ~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 455 KVLDLSCNNLS 465 (1081)
T ss_pred eEEecccchhh
Confidence 44444444443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.2e-32 Score=282.51 Aligned_cols=364 Identities=23% Similarity=0.344 Sum_probs=265.6
Q ss_pred ccEEEccCcccCC-ccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEc
Q 045210 399 LESLDLSNNTLFG-LLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDA 477 (873)
Q Consensus 399 L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 477 (873)
.+-+|+++|.++| ..|.....++.++.|.|...++. .+|+.++.+.+|++|.+.+|++..... .+..++.|+.+.+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG--ELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG--ELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh--hhccchhhHHHhh
Confidence 5566667776663 56666677777777777777766 667777777777777777777653222 3666777777777
Q ss_pred CCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccc
Q 045210 478 SGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIF 557 (873)
Q Consensus 478 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~ 557 (873)
..|++....+++.......|+.++++.|.+. +.|..+...+++-.|++++|+|. .||..++-++..|-+|++++|++.
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 7777766666666666666777777766654 56777888888889999999885 788888888888888999999888
Q ss_pred cccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCccc-CCCChhh
Q 045210 558 GQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS-GEIPDCW 636 (873)
Q Consensus 558 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~l 636 (873)
..+|.+..+..|++|++++|++...- -..+..+++|+.|.+++.+-+ ..+|..+
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQ-------------------------LrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQ-------------------------LRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHH-------------------------HhcCccchhhhhhhcccccchhhcCCCch
Confidence 77778888888888888887664210 001222566777777776543 4678888
Q ss_pred hccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCc
Q 045210 637 MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGII 716 (873)
Q Consensus 637 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~ 716 (873)
..+.+|..++++.|.+. ..|+.+.++++|+.|+|++|+++ .+....+...+|++|++|.|+++ .+|..+.+ ++.|+
T Consensus 219 d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~ 294 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLT 294 (1255)
T ss_pred hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHH
Confidence 88888888888888887 67888888888888888888887 44444555667888888888887 78887776 78888
Q ss_pred EEEccCCeeee-eCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCcc
Q 045210 717 LLSLRANQFHG-FFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYY 795 (873)
Q Consensus 717 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (873)
.|.+.+|+++- -||.+++.+.+|+.+..++|.+. .+|+.+..|..|
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL-------------------------------- 341 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL-------------------------------- 341 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH--------------------------------
Confidence 88888877642 46777777777777777777776 677777766665
Q ss_pred ceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCc
Q 045210 796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS 831 (873)
Q Consensus 796 L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 831 (873)
+.|.|++|++- .+|+.+.-|+.|+.||+..|.-.
T Consensus 342 -~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 342 -QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -HHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 56777777776 67777777777777777777655
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=7.8e-32 Score=280.56 Aligned_cols=183 Identities=27% Similarity=0.439 Sum_probs=122.6
Q ss_pred cCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCC
Q 045210 118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS 197 (873)
Q Consensus 118 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~ 197 (873)
+-++..|-.|+++|.++|...|..+..++.++.|.|....+. .+|++++.|.+|++|.+++|++.++..
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG---------- 72 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG---------- 72 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh----------
Confidence 346778888999999998778888888999999998887754 578888888888888888877654432
Q ss_pred CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEE
Q 045210 198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFL 277 (873)
Q Consensus 198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 277 (873)
.++.++.||.+++..|++....+|..+..+..|+.|
T Consensus 73 --------------------------------------------ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 73 --------------------------------------------ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL 108 (1255)
T ss_pred --------------------------------------------hhccchhhHHHhhhccccccCCCCchhcccccceee
Confidence 234455666666666666656666666666677777
Q ss_pred EccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCC
Q 045210 278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE 357 (873)
Q Consensus 278 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 357 (873)
||+.|++. ..|..+..-+++-+|++++|+|..+....+.+++.|-.|||++|++. .+|..+..+..|++|+|++|.+.
T Consensus 109 DLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 109 DLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred ecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence 77777666 55666666666666666666666332233445555566666666555 44445555555555555555543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=9.3e-22 Score=242.74 Aligned_cols=299 Identities=25% Similarity=0.259 Sum_probs=136.7
Q ss_pred cccCCCCCCCEEeCCCCcc------CccccccccCCC-CCCEEEccCccCCcccChhhhhcccccceEEcCCCeeecccc
Q 045210 415 NQIGNFKNLDSLDLSFNNI------SGHIPLSLGQLS-SLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVV 487 (873)
Q Consensus 415 ~~l~~l~~L~~L~L~~n~l------~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 487 (873)
.+|..|++|+.|.+..+.. ...+|..+..++ +|+.|++.++++. .+|.. | ...+|+.|++.++.+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~-f-~~~~L~~L~L~~s~l~---- 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSN-F-RPENLVKLQMQGSKLE---- 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCc-C-CccCCcEEECcCcccc----
Confidence 3466677777776654432 223455555443 4666666666654 44432 2 3345555555554432
Q ss_pred CCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-Ccccc
Q 045210 488 SPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDA 566 (873)
Q Consensus 488 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~ 566 (873)
.++..+..+++|+.++++++.....+|. +..+++|++|++++|.....+| .+..+
T Consensus 625 ----------------------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 625 ----------------------KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred ----------------------ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhcc
Confidence 1223334455555555555544344443 2334555555555554444444 45555
Q ss_pred CCCCeEeCCCCCCCCCCCCC--CCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcE
Q 045210 567 AQLETLDLSSNSLSGPLPLI--PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFF 644 (873)
Q Consensus 567 ~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 644 (873)
++|+.|++++|...+.+|.. +++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|+.
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~-------~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~ 751 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI-------STNISWLDLDETAIE-EFPSNL-RLENLDE 751 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc-------cCCcCeeecCCCccc-cccccc-ccccccc
Confidence 55555555555444444432 344445555444333333321 234555555555544 334332 3455555
Q ss_pred EEcCCCcCcc-------CCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcE
Q 045210 645 LHLGENDFTG-------NLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL 717 (873)
Q Consensus 645 L~l~~n~l~~-------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 717 (873)
|++.++.... ..|......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~ 829 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLES 829 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCE
Confidence 5555433210 001111122344555555544444444444445555555554444333444433 1444444
Q ss_pred EEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhh
Q 045210 718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINN 759 (873)
Q Consensus 718 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 759 (873)
|++++|.....+|.. .++|+.|+|++|.++ .+|.+++.
T Consensus 830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~ 867 (1153)
T PLN03210 830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEK 867 (1153)
T ss_pred EECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhc
Confidence 444444333333321 133444444444444 34444333
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.7e-21 Score=240.39 Aligned_cols=343 Identities=21% Similarity=0.231 Sum_probs=216.1
Q ss_pred hhhhhcCCCCCEEEccCCcCc------chhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccC
Q 045210 361 PRAFKRLRHLRSVNLSGNKLS------QEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS 434 (873)
Q Consensus 361 ~~~l~~l~~L~~L~L~~n~l~------~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 434 (873)
+.+|.++++|+.|.+..+... ...+..+.. .+ ..|+.|.+.++.+.. +|..+ ...+|++|++.+|++.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~---lp-~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY---LP-PKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhh---cC-cccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc
Confidence 345666667776666544321 111111111 11 226666666666544 34444 3567777777777666
Q ss_pred ccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchh
Q 045210 435 GHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQW 514 (873)
Q Consensus 435 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 514 (873)
.++..+..+++|+.|+++++...+.+|. +..+++|+.|++++| .....+|..
T Consensus 625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c-------------------------~~L~~lp~s 676 (1153)
T PLN03210 625 -KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC-------------------------SSLVELPSS 676 (1153)
T ss_pred -ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC-------------------------CCccccchh
Confidence 4566666677777777776654445543 444555555555444 333345555
Q ss_pred hhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCC--CCCCcE
Q 045210 515 LLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLI--PSSLTT 592 (873)
Q Consensus 515 l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~ 592 (873)
+..+++|+.|++++|...+.+|... .+++|+.|++++|...+.+|.. ..+|+.|++++|.+.. +|.. +++|+.
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~-lP~~~~l~~L~~ 751 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEE-FPSNLRLENLDE 751 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccc-cccccccccccc
Confidence 5666666666666665555555433 3556666666666554444432 2456666666666542 3321 355666
Q ss_pred EEccCccCc---CcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEE
Q 045210 593 LDLSSNFLS---GTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQIL 669 (873)
Q Consensus 593 L~l~~n~l~---~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 669 (873)
|.+.++... +.+...........++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L 830 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL 830 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE
Confidence 665553211 10000000011225688999999998888889999999999999999987666788766 68899999
Q ss_pred EccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210 670 HLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748 (873)
Q Consensus 670 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 748 (873)
++++|.....+|.. .++|+.|++++|.+. .+|.++.. +++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 831 ~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~-l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 831 DLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhc-CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99998776666653 367889999999987 78988875 8999999999876666788888888999999998885
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=4.7e-22 Score=226.42 Aligned_cols=268 Identities=27% Similarity=0.380 Sum_probs=191.5
Q ss_pred cccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCcc
Q 045210 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF 599 (873)
Q Consensus 520 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 599 (873)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++. +|..+++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccCc-ccCcccccceeeccCCc
Confidence 4567788888776 5676554 367888888888775 342 24678888888888774 46667788888888888
Q ss_pred CcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCccccc
Q 045210 600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGK 679 (873)
Q Consensus 600 l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 679 (873)
++. +|.. ..+|+.|++++|+++ .+|. ..++|+.|++++|++++ +|.. ..+|+.|++++|++++
T Consensus 274 L~~-Lp~l-------p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 274 LTH-LPAL-------PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred hhh-hhhc-------hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 763 3322 346778888888887 4454 24678888888888874 4542 2457788888888873
Q ss_pred CCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhh
Q 045210 680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINN 759 (873)
Q Consensus 680 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 759 (873)
+|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|++.+ +|.. .++|+.|++++|+++ .+|..
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l--- 400 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL--- 400 (788)
T ss_pred cccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---
Confidence 5532 247888888888888 56652 4677888888888874 5543 356888888888887 35532
Q ss_pred hhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCcccc
Q 045210 760 LAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMG 839 (873)
Q Consensus 760 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 839 (873)
+..|+.|++|+|+++ .+|... .+|+.|++++|+++ .+|..++
T Consensus 401 ---------------------------------~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~ 442 (788)
T PRK15387 401 ---------------------------------PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLI 442 (788)
T ss_pred ---------------------------------ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHh
Confidence 123478888888888 477543 45678888888887 6888888
Q ss_pred CCCCCCeEeccCCccccccccccccCC
Q 045210 840 AMKSVEALDFSSNRLQGEIPKNMVNLE 866 (873)
Q Consensus 840 ~l~~L~~L~ls~N~l~g~iP~~l~~l~ 866 (873)
++++|+.|++++|+++|.+|..+..++
T Consensus 443 ~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 443 HLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred hccCCCeEECCCCCCCchHHHHHHHHh
Confidence 888888888888888888888775443
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=9.5e-24 Score=210.07 Aligned_cols=275 Identities=24% Similarity=0.249 Sum_probs=198.9
Q ss_pred CCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccC-CcCCCCChhhhcCCCCCCEE
Q 045210 223 HSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLST-NNFQGAVPDAIQNSTSLQHL 301 (873)
Q Consensus 223 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L 301 (873)
+.-.+++|..|.|+.+++.+|+.+++||.|||++|.++ ..-|..+.++.+|..|.+.+ |+|+..-...|+++..++.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 35677888899999999999999999999999999987 55578888888887777666 88886666788899999999
Q ss_pred ECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCC------------CcchhhhhcCCC
Q 045210 302 DLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE------------SKIPRAFKRLRH 369 (873)
Q Consensus 302 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------------~~~~~~l~~l~~ 369 (873)
.+.-|++.-...+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+. ...|..++...-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 99999988777888999999999999999888433347888889999988887632 112233444444
Q ss_pred CCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCc-cccccCCCCCCCEEeCCCCccCccccccccCCCCCC
Q 045210 370 LRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGL-LTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLR 448 (873)
Q Consensus 370 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 448 (873)
.....+.+.++.......+.... ..+.+-..+.+...+. ....|..+++|++|++++|++++.-+.+|.....++
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~----esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSL----ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhH----HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 44444445544444333332110 0011112223333333 334688999999999999999988899999999999
Q ss_pred EEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccc
Q 045210 449 YLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSS 504 (873)
Q Consensus 449 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 504 (873)
+|.|..|++. .+....|.++..|+.|++++|+++.. .+..+.+...+.++.+-.
T Consensus 302 eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~-~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 302 ELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTV-APGAFQTLFSLSTLNLLS 355 (498)
T ss_pred hhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEE-ecccccccceeeeeehcc
Confidence 9999999987 67777899999999999999988755 333344444444444443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-23 Score=209.76 Aligned_cols=426 Identities=23% Similarity=0.222 Sum_probs=252.8
Q ss_pred CcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccC-CcCcchhhHHHHHhhhcccccc
Q 045210 321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSG-NKLSQEISQVLDMFSACASNVL 399 (873)
Q Consensus 321 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~L 399 (873)
.-..++|..|+|+...|.+|+.+++|+.|+|++|+|+.+.|.+|.+++++.+|.+.+ |+|+......|..+.. +
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s-----l 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS-----L 142 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH-----H
Confidence 456677777777766667777788888888888888777778888777776666665 6777666666655543 6
Q ss_pred cEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCC
Q 045210 400 ESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASG 479 (873)
Q Consensus 400 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 479 (873)
+.|.+.-|++.....+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|++.... +++.+..... .
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC------nL~wla~~~a-~ 215 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC------NLPWLADDLA-M 215 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc------ccchhhhHHh-h
Confidence 66777777777766677777777777777777777333336777777777777777654221 1111110000 0
Q ss_pred CeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccc
Q 045210 480 NSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQ 559 (873)
Q Consensus 480 n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~ 559 (873)
.|..++...-..-..+.+.++..+-+..+...
T Consensus 216 -------------------------------~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~----------------- 247 (498)
T KOG4237|consen 216 -------------------------------NPIETSGARCVSPYRLYYKRINQEDARKFLCS----------------- 247 (498)
T ss_pred -------------------------------chhhcccceecchHHHHHHHhcccchhhhhhh-----------------
Confidence 00000000000000111111110001100000
Q ss_pred cCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhcc
Q 045210 560 IPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNW 639 (873)
Q Consensus 560 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l 639 (873)
++. +..--.+.+...+..|.. .|..+++|+.|++++|++++.-+.+|.+.
T Consensus 248 ---------~es------------------l~s~~~~~d~~d~~cP~~---cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 248 ---------LES------------------LPSRLSSEDFPDSICPAK---CFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred ---------HHh------------------HHHhhccccCcCCcChHH---HHhhcccceEeccCCCccchhhhhhhcch
Confidence 000 000001112222222322 25568888888888888888888888888
Q ss_pred ccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeeccc-CChhHHhhcccCcEE
Q 045210 640 SFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN-IPTWIGERLSGIILL 718 (873)
Q Consensus 640 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-ip~~~~~~l~~L~~L 718 (873)
..+++|.|..|++...-...|.++..|+.|+|.+|+++...|..|..+.+|.+|++-.|.+... --.|+++-+
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl------ 371 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL------ 371 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH------
Confidence 8888888888888765556778888888888888888888888888888888888888776532 123443322
Q ss_pred EccCCeeeeeCCcccCCCCCCCEEeCCCCccc---cccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCcc
Q 045210 719 SLRANQFHGFFPPELCGLASLKILDLSSNNLT---GVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYY 795 (873)
Q Consensus 719 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~---~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (873)
+...-.|..| . +.-..++.++++++.+. ..-|++.+...+=. ...+ ..-....+.........+|..+|..
T Consensus 372 --r~~~~~~~~~-C-q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~-cP~~-c~c~~tVvRcSnk~lk~lp~~iP~d 445 (498)
T KOG4237|consen 372 --RKKSVVGNPR-C-QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSP-CPPP-CTCLDTVVRCSNKLLKLLPRGIPVD 445 (498)
T ss_pred --hhCCCCCCCC-C-CCCchhccccchhccccccccCCccccCCCCCCC-CCCC-cchhhhhHhhcccchhhcCCCCCch
Confidence 1222122211 1 12234455555555432 22333322111100 0000 0000111122233445567777778
Q ss_pred ceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCC
Q 045210 796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSN 852 (873)
Q Consensus 796 L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 852 (873)
-++|++.+|.++ .+|.+ .+.+| .+|+|+|+++-.--..|.+|++|.+|.+|||
T Consensus 446 ~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 446 VTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 899999999999 79987 77788 9999999999776778899999999999997
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.2e-20 Score=215.01 Aligned_cols=264 Identities=27% Similarity=0.343 Sum_probs=201.8
Q ss_pred EEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCC
Q 045210 499 AIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNS 578 (873)
Q Consensus 499 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~ 578 (873)
.|+++.+.+. .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++.. |. ..++|+.|++++|.
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~--lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV--LPPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC--cccccceeeccCCc
Confidence 4455555444 3555443 36888888888887 3554 257899999999988854 43 24688999999998
Q ss_pred CCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcc
Q 045210 579 LSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658 (873)
Q Consensus 579 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 658 (873)
+. .+|..+.+|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|.
T Consensus 274 L~-~Lp~lp~~L~~L~Ls~N~Lt~-LP~~-------p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 274 LT-HLPALPSGLCKLWIFGNQLTS-LPVL-------PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred hh-hhhhchhhcCEEECcCCcccc-cccc-------ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc
Confidence 87 455677889999999998875 3432 4679999999999985 4442 2468889999999984 664
Q ss_pred cccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCC
Q 045210 659 SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLAS 738 (873)
Q Consensus 659 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 738 (873)
. ..+|+.|++++|++++ +|.. ..+|+.|++++|++. .+|.. .++|+.|++++|++++ +|.. .++
T Consensus 340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred c---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc---ccC
Confidence 2 2579999999999984 5643 357888999999998 58853 5679999999999985 5543 368
Q ss_pred CCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCC
Q 045210 739 LKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLV 818 (873)
Q Consensus 739 L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~ 818 (873)
|+.|++++|+++ .+|... ..|+.|++++|+++ .+|..+++++
T Consensus 404 L~~LdLS~N~Ls-sIP~l~------------------------------------~~L~~L~Ls~NqLt-~LP~sl~~L~ 445 (788)
T PRK15387 404 LKELMVSGNRLT-SLPMLP------------------------------------SGLLSLSVYRNQLT-RLPESLIHLS 445 (788)
T ss_pred CCEEEccCCcCC-CCCcch------------------------------------hhhhhhhhccCccc-ccChHHhhcc
Confidence 999999999998 467532 12467999999998 7999999999
Q ss_pred CCCeeeCCCCcCcccCCccccCC
Q 045210 819 GLQTLKLSHNFFSGRIPVNMGAM 841 (873)
Q Consensus 819 ~L~~L~Ls~N~l~~~ip~~l~~l 841 (873)
.|+.|+|++|+++|.+|..+..+
T Consensus 446 ~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 446 SETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCCeEECCCCCCCchHHHHHHHH
Confidence 99999999999999988877443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.3e-19 Score=206.30 Aligned_cols=247 Identities=26% Similarity=0.380 Sum_probs=166.4
Q ss_pred CcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCc
Q 045210 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN 598 (873)
Q Consensus 519 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 598 (873)
.+...|+++++.++ .+|..+. +.++.|++++|+++.....+. ++|+.|++++|.+++.....+.+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP---EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCC
Confidence 35678888888877 4665442 478888888888885433332 47888888888877543334667888888888
Q ss_pred cCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccc
Q 045210 599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSG 678 (873)
Q Consensus 599 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 678 (873)
.+. .+|..+ ..+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++.
T Consensus 252 ~L~-~LP~~l------~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 252 RIT-ELPERL------PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred ccC-cCChhH------hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence 876 445443 246788888888877 4565443 478888888888773 555443 467778888887773
Q ss_pred cCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhh
Q 045210 679 KIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCIN 758 (873)
Q Consensus 679 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 758 (873)
+|..+ .++|+.|++++|.++ .+|..+ .++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+.
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~ 387 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP 387 (754)
T ss_pred -CCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH
Confidence 45433 257778888888777 477654 467788888888776 4555443 57788888888777 5565432
Q ss_pred hhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhh----cCCCCCeeeCCCCcCc
Q 045210 759 NLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVT----NLVGLQTLKLSHNFFS 831 (873)
Q Consensus 759 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~----~l~~L~~L~Ls~N~l~ 831 (873)
..|+.||+++|+++ .+|..+. .++.+..|++.+|+++
T Consensus 388 -----------------------------------~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -----------------------------------AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -----------------------------------HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 12366778888777 5565443 3466777888888776
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=2.5e-19 Score=206.05 Aligned_cols=231 Identities=26% Similarity=0.405 Sum_probs=134.3
Q ss_pred ccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCC
Q 045210 497 LQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSS 576 (873)
Q Consensus 497 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 576 (873)
...|.++++.+. .+|..+. ++++.|++++|++. .+|..++ ++|++|++++|+++.....+ .+.|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATL--PDTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhh--hccccEEECcC
Confidence 455666665544 2444332 35677777777666 4555443 36777777777666432222 23567777777
Q ss_pred CCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCC
Q 045210 577 NSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNL 656 (873)
Q Consensus 577 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 656 (873)
|.+.......+.+|+.|++++|+++. +|..+ .++|+.|++++|++++ +|..+. ++|+.|++++|+++. +
T Consensus 251 N~L~~LP~~l~s~L~~L~Ls~N~L~~-LP~~l------~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 251 NRITELPERLPSALQSLDLFHNKISC-LPENL------PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CccCcCChhHhCCCCEEECcCCccCc-ccccc------CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 77663322335567777777776663 44322 2356777777777663 443332 356667777777663 4
Q ss_pred cccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCC
Q 045210 657 PTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGL 736 (873)
Q Consensus 657 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 736 (873)
|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|+++ .+|+.+.
T Consensus 320 P~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 320 PETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred Ccccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--
Confidence 44332 567777777777663 554442 56777777777766 566544 356777777777766 3454443
Q ss_pred CCCCEEeCCCCccccccChhhhhh
Q 045210 737 ASLKILDLSSNNLTGVIPRCINNL 760 (873)
Q Consensus 737 ~~L~~L~Ls~N~l~~~ip~~l~~l 760 (873)
.+|+.|++++|+++ .+|..+.++
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~ 410 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHF 410 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHH
Confidence 35667777777776 556555443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=6e-18 Score=181.98 Aligned_cols=287 Identities=20% Similarity=0.188 Sum_probs=130.5
Q ss_pred eecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCC----CcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCc
Q 045210 125 HLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGI----IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK 200 (873)
Q Consensus 125 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~ 200 (873)
.|+|..+.+++...+..+..+.+|++|+++++.++.. ++..+...++|++++++++.+...+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~------------ 69 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRG------------ 69 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchH------------
Confidence 4667777776555566666666777777777766432 333344445555555555433210000
Q ss_pred EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEcc
Q 045210 201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS 280 (873)
Q Consensus 201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 280 (873)
....+..+..+++|+.|++++|.+....+..+..+.+ . ++|++|+++
T Consensus 70 -----------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---------------------~-~~L~~L~ls 116 (319)
T cd00116 70 -----------LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR---------------------S-SSLQELKLN 116 (319)
T ss_pred -----------HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhc---------------------c-CcccEEEee
Confidence 0000112233445555555555444333333322222 1 224444444
Q ss_pred CCcCCC----CChhhhcCC-CCCCEEECCCCCCCCC----CchhhhcCCCcCEEEccCCcCCcc----CcccccCCCCCC
Q 045210 281 TNNFQG----AVPDAIQNS-TSLQHLDLSRNHFSSS----VPDWFNKFIDLEYLSLSYNELQGS----IPGSLGNLTSIK 347 (873)
Q Consensus 281 ~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~ 347 (873)
+|++++ .+...+..+ ++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+
T Consensus 117 ~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~ 196 (319)
T cd00116 117 NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196 (319)
T ss_pred CCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCC
Confidence 444432 122233333 4555555555555422 222334445555555555555421 222333445566
Q ss_pred EEeCCCCcCCCc----chhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC----ccccccCC
Q 045210 348 SLDLSFNRLESK----IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG----LLTNQIGN 419 (873)
Q Consensus 348 ~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~ 419 (873)
+|++++|.+++. +...+..+++|++|++++|.+++.....+..........|++|++++|.++. .+...+..
T Consensus 197 ~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~ 276 (319)
T cd00116 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE 276 (319)
T ss_pred EEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc
Confidence 666666555432 2233444556666666666655432222111100001125666666655542 12233344
Q ss_pred CCCCCEEeCCCCccCcc----ccccccCC-CCCCEEEccCcc
Q 045210 420 FKNLDSLDLSFNNISGH----IPLSLGQL-SSLRYLDVSTNN 456 (873)
Q Consensus 420 l~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~ 456 (873)
+++|+++++++|.++.. ....+... +.|+++++.+|+
T Consensus 277 ~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 45666666666666533 22222233 455555555543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=4.4e-18 Score=183.03 Aligned_cols=257 Identities=21% Similarity=0.230 Sum_probs=139.8
Q ss_pred cee-eecccCccCCCCCCeecCCCCCCCCC---CCCccccCCCCCCEEeccCCcCCC------CCcccccCCCCCcEEEC
Q 045210 108 KIV-GKINPSLLGLKHLIHLDLSYNDFQGI---QIPRFLGSLENLMYLNISRAGFVG------IIPHQIGNLSNLQFLDL 177 (873)
Q Consensus 108 ~~~-g~~~~~l~~l~~L~~L~Ls~n~~~~~---~~~~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L 177 (873)
.+. +.....+..+++|++|+++++.++.. .++..+...+.|++|+++++.+.+ .++..+..+++|++|++
T Consensus 9 ~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 88 (319)
T cd00116 9 LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL 88 (319)
T ss_pred cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc
Confidence 444 34445567788899999999998543 256677788899999999988762 23455677888888888
Q ss_pred CCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCC-CCccEEEcCC
Q 045210 178 RPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANF-SSLVTLDISD 256 (873)
Q Consensus 178 ~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~ 256 (873)
++|.+.......+..+...++|++|++++|.+++... ......+..+ ++|+.|++++
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~----------------------~~l~~~l~~~~~~L~~L~L~~ 146 (319)
T cd00116 89 SDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL----------------------RLLAKGLKDLPPALEKLVLGR 146 (319)
T ss_pred cCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH----------------------HHHHHHHHhCCCCceEEEcCC
Confidence 8887764333222111111335555555444432100 0111223333 5555556655
Q ss_pred CCCCCC---chhHhhcCCCCCcEEEccCCcCCCC----ChhhhcCCCCCCEEECCCCCCCCCC----chhhhcCCCcCEE
Q 045210 257 NQFADS---SIVNQVLGLVNLVFLDLSTNNFQGA----VPDAIQNSTSLQHLDLSRNHFSSSV----PDWFNKFIDLEYL 325 (873)
Q Consensus 257 n~l~~~---~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L 325 (873)
|.++.. .+...+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|++|
T Consensus 147 n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226 (319)
T ss_pred CcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE
Confidence 555421 1223344555666666666665532 2233444456666666666554322 2233445566666
Q ss_pred EccCCcCCccCccccc-----CCCCCCEEeCCCCcCCC----cchhhhhcCCCCCEEEccCCcCcchhhH
Q 045210 326 SLSYNELQGSIPGSLG-----NLTSIKSLDLSFNRLES----KIPRAFKRLRHLRSVNLSGNKLSQEISQ 386 (873)
Q Consensus 326 ~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 386 (873)
++++|.+++.....+. ..+.|++|++++|.++. .+...+..+++|+.+++++|.+......
T Consensus 227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 6666655532222221 12566666666666542 1233444455666666666666554333
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.8e-18 Score=152.61 Aligned_cols=183 Identities=22% Similarity=0.458 Sum_probs=116.8
Q ss_pred hhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccC
Q 045210 636 WMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGI 715 (873)
Q Consensus 636 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L 715 (873)
+..++..+.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.++.|+.|+++-|++. .+|..++. ++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-FPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-Cchh
Confidence 345566667777777777 55666777777777777777776 66777777777777777777766 56666664 6666
Q ss_pred cEEEccCCeeee-eCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCc
Q 045210 716 ILLSLRANQFHG-FFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPY 794 (873)
Q Consensus 716 ~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (873)
+.||+..|++.. .+|..|..++.|+.|+|++|.|. .+|..+++++.|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l------------------------------- 152 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL------------------------------- 152 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce-------------------------------
Confidence 667666666543 45666666666666666666665 666666666554
Q ss_pred cceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCC---CeEeccCCcccccc
Q 045210 795 YLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSV---EALDFSSNRLQGEI 858 (873)
Q Consensus 795 ~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L---~~L~ls~N~l~g~i 858 (873)
+.|.+..|.+. ++|.+++.++.|+.|.+.+|+++ .+|..++++.-+ +.+.+.+|++...|
T Consensus 153 --qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 153 --QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred --eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 56666666665 56666666666666666666666 555555554211 23334445544433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=3.5e-18 Score=150.86 Aligned_cols=185 Identities=26% Similarity=0.454 Sum_probs=158.3
Q ss_pred ccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcE
Q 045210 613 NNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRL 692 (873)
Q Consensus 613 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 692 (873)
.++...+.|.+|+|+++ .+|..+..+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. ..|..|+.++.|++
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34567788899999998 67778899999999999999998 68888999999999999999987 88999999999999
Q ss_pred EEccCCeecc-cCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchh
Q 045210 693 FDISENEFVG-NIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVD 771 (873)
Q Consensus 693 L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~ 771 (873)
||+.+|.+.. .+|..++. ++.|+.|++++|.|. .+|+.++++++|+.|.+..|.+. ++|++++.++.|
T Consensus 107 ldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l-------- 175 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL-------- 175 (264)
T ss_pred hhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH--------
Confidence 9999998874 47888885 999999999999998 78889999999999999999998 889999988876
Q ss_pred hhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCC---CeeeCCCCcCcccCCcc
Q 045210 772 KFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGL---QTLKLSHNFFSGRIPVN 837 (873)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L---~~L~Ls~N~l~~~ip~~ 837 (873)
++|.+.+|+++ .+|++++++.-+ +++.+.+|.....|.+.
T Consensus 176 -------------------------relhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 176 -------------------------RELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred -------------------------HHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence 78999999998 789899887433 45677788776555544
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.45 E-value=3.5e-13 Score=155.40 Aligned_cols=131 Identities=34% Similarity=0.530 Sum_probs=112.9
Q ss_pred ccCCHHHHHHHHHhhhcCCCCCCCcCCCccCCCCCCc----cceeeEecC--CC--CcEEEEecCCCCCCCCCchhhhhc
Q 045210 33 AGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCC----KWYGVVCDN--IT--GHVLELRLRNPSRDDGSPAEYEAY 104 (873)
Q Consensus 33 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~c----~w~gv~c~~--~~--~~v~~l~l~~~~~~~~~~~~~~~~ 104 (873)
..+.++|.+||+++|+++.+|.. .+|. +..|| .|.||.|.. .. .+|+.|+|++.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~---g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n------------- 428 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN---GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ------------- 428 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC---CCCCCCcccccccceeeccCCCCceEEEEEECCCC-------------
Confidence 35677899999999999876542 4897 44443 799999952 22 25999999985
Q ss_pred cccceeeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCC
Q 045210 105 ERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGG 184 (873)
Q Consensus 105 ~~~~~~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 184 (873)
.+.|.+|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|.+++.+|..++++++|++|++++|.++.
T Consensus 429 ---~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 429 ---GLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred ---CccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 78999999999999999999999999987 99999999999999999999999999999999999999999998874
Q ss_pred C
Q 045210 185 L 185 (873)
Q Consensus 185 l 185 (873)
.
T Consensus 505 ~ 505 (623)
T PLN03150 505 R 505 (623)
T ss_pred c
Confidence 3
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=2.2e-14 Score=150.30 Aligned_cols=192 Identities=27% Similarity=0.389 Sum_probs=139.6
Q ss_pred CceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccC
Q 045210 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE 697 (873)
Q Consensus 618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 697 (873)
-...|++.|++. ++|..+..+..|+.+.++.|.+- .+|..+.++..|+++||+.|+++ .+|..+..|+ |+.|-+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 456677888877 77777777788888888888776 67777888888888888888877 6677666664 77788888
Q ss_pred CeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhh
Q 045210 698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDA 777 (873)
Q Consensus 698 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~ 777 (873)
|+++ .+|..++ ....|..|+.+.|.+. .+|..++++.+|+.|++..|++. .+|+++..|+
T Consensus 153 Nkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp---------------- 212 (722)
T KOG0532|consen 153 NKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP---------------- 212 (722)
T ss_pred Cccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc----------------
Confidence 8877 7777777 4777777777777776 56667777777777777777776 5666655332
Q ss_pred eeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCcccc---CCCCCCeEeccCCc
Q 045210 778 LIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMG---AMKSVEALDFSSNR 853 (873)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~ls~N~ 853 (873)
|..||+|+|+++ .||-.|.+|+.|++|-|.+|.+. +-|..+. ...-.++|+..-++
T Consensus 213 ------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 213 ------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 367888888887 68888888888888888888887 4555543 33345566666664
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=5e-14 Score=147.71 Aligned_cols=193 Identities=29% Similarity=0.454 Sum_probs=154.0
Q ss_pred CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210 589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI 668 (873)
Q Consensus 589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 668 (873)
--...|++.|++. .+|..++. +..|+.+.+..|.+- .+|.++.++..|++++|+.|+++ .+|..+..|+ |+.
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~----f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACA----FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred chhhhhccccccc-cCchHHHH----HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 4456788888876 45655554 677888888888887 78888899999999999999988 6777777665 888
Q ss_pred EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210 669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748 (873)
Q Consensus 669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 748 (873)
|-+++|+++ .+|+.++....|..||.+.|.+. .+|..++. +.+|+.|.++.|++. .+|++++.| .|..||+|+|+
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc
Confidence 899999887 78888888888899999999888 78888885 889999999999887 566777755 58889999999
Q ss_pred cccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhh---hcCCCCCeeeC
Q 045210 749 LTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQV---TNLVGLQTLKL 825 (873)
Q Consensus 749 l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l---~~l~~L~~L~L 825 (873)
++ .||-+|.+++.| ++|-|.+|.+. .-|.++ |...-.++|+.
T Consensus 223 is-~iPv~fr~m~~L---------------------------------q~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHL---------------------------------QVLQLENNPLQ-SPPAQICEKGKVHIFKYLST 267 (722)
T ss_pred ee-ecchhhhhhhhh---------------------------------eeeeeccCCCC-CChHHHHhccceeeeeeecc
Confidence 88 888888888876 78888899887 566666 44445567777
Q ss_pred CCCc
Q 045210 826 SHNF 829 (873)
Q Consensus 826 s~N~ 829 (873)
.-++
T Consensus 268 qA~q 271 (722)
T KOG0532|consen 268 QACQ 271 (722)
T ss_pred hhcc
Confidence 7774
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=9.9e-12 Score=137.53 Aligned_cols=180 Identities=33% Similarity=0.549 Sum_probs=99.0
Q ss_pred cccCcEEEcCCCcCccCCcccccCCC-CccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcE
Q 045210 639 WSFLFFLHLGENDFTGNLPTSLGTLS-SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL 717 (873)
Q Consensus 639 l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 717 (873)
.+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|..... .+.|+.
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNN 190 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhh-hhhhhh
Confidence 345555555555555 3444444442 5666666666555 34444555666666666666665 45554432 566666
Q ss_pred EEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccce
Q 045210 718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLK 797 (873)
Q Consensus 718 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 797 (873)
|++++|++. .+|..+.....|+.+++++|+.. .++..+.++..+ .
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l---------------------------------~ 235 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL---------------------------------S 235 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------------------------c
Confidence 666666665 44444444455666666666433 334444444433 3
Q ss_pred EEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccccccc
Q 045210 798 VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPK 860 (873)
Q Consensus 798 ~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 860 (873)
.+.+++|++. .+|..++.+++++.|++++|.++ .++. ++.+.+++.||+++|.++...|.
T Consensus 236 ~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 236 GLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 4445566555 33555666666666666666666 3333 56666666666666666655443
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.21 E-value=1.8e-11 Score=141.37 Aligned_cols=112 Identities=34% Similarity=0.594 Sum_probs=68.8
Q ss_pred CcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCc
Q 045210 715 IILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPY 794 (873)
Q Consensus 715 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (873)
++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.++.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L------------------------------- 468 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL------------------------------- 468 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCC-------------------------------
Confidence 4455555566656666666666666666666666666666666555544
Q ss_pred cceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCC-CCCCeEeccCCccccccc
Q 045210 795 YLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM-KSVEALDFSSNRLQGEIP 859 (873)
Q Consensus 795 ~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~iP 859 (873)
+.|||++|+++|.+|+.++++++|++|+|++|.++|.+|..++.+ .++..+++++|+..+.+|
T Consensus 469 --~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 469 --EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred --CEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 566666666666666666666666666666666666666666543 345566666666554444
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=2.1e-12 Score=128.34 Aligned_cols=254 Identities=24% Similarity=0.288 Sum_probs=151.2
Q ss_pred cCccCCCCCCeecCCCCCCCCC---CCCccccCCCCCCEEeccCCc---CCCCCccc-------ccCCCCCcEEECCCCC
Q 045210 115 PSLLGLKHLIHLDLSYNDFQGI---QIPRFLGSLENLMYLNISRAG---FVGIIPHQ-------IGNLSNLQFLDLRPNY 181 (873)
Q Consensus 115 ~~l~~l~~L~~L~Ls~n~~~~~---~~~~~l~~l~~L~~L~L~~n~---l~~~~p~~-------l~~l~~L~~L~L~~n~ 181 (873)
+.+.....+++++||+|.+... .+...+.+.++|+.-++++.- ....+|.. +..+++|+++|||.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3455667777788887776532 133445666777777777642 22234433 3455677777777777
Q ss_pred CCCCccCccc-cccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCC
Q 045210 182 LGGLYVEDFG-WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFA 260 (873)
Q Consensus 182 l~~l~~~~~~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 260 (873)
+..-....+. .++++..|++|.|.+|.+........ + ..|.+|. .......-+.||++...+|++.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l--~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL--G--RALFELA---------VNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH--H--HHHHHHH---------HHhccCCCcceEEEEeeccccc
Confidence 6544444332 24556666666666665544321110 0 0000000 0011233456777777777765
Q ss_pred CCc---hhHhhcCCCCCcEEEccCCcCCC----CChhhhcCCCCCCEEECCCCCCCCC----CchhhhcCCCcCEEEccC
Q 045210 261 DSS---IVNQVLGLVNLVFLDLSTNNFQG----AVPDAIQNSTSLQHLDLSRNHFSSS----VPDWFNKFIDLEYLSLSY 329 (873)
Q Consensus 261 ~~~---~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~ 329 (873)
++. +...+...+.|+.+.++.|.+.. .+...+..|++|++||+..|.++.. +...+..+++|+.+++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 443 23355566777777777777652 2345677788888888888877633 234455677888888888
Q ss_pred CcCCccCcccc-----cCCCCCCEEeCCCCcCCCc----chhhhhcCCCCCEEEccCCcCc
Q 045210 330 NELQGSIPGSL-----GNLTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVNLSGNKLS 381 (873)
Q Consensus 330 n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 381 (873)
|.+...-..++ ...++|+.+.+.+|.++.. +...+...+.|+.|++++|.+.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 88765433333 2467888888888887643 2234456788888999998884
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=1.4e-11 Score=122.62 Aligned_cols=115 Identities=22% Similarity=0.299 Sum_probs=55.3
Q ss_pred cCCCCCCEEeCCCCcCCCc----chhhhhcCCCCCEEEccCCcCcchhhHHHH-HhhhcccccccEEEccCcccCCcccc
Q 045210 341 GNLTSIKSLDLSFNRLESK----IPRAFKRLRHLRSVNLSGNKLSQEISQVLD-MFSACASNVLESLDLSNNTLFGLLTN 415 (873)
Q Consensus 341 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~ 415 (873)
...+.|+.+.++.|.|... +...+..+++|+.|+|.+|-++........ .++.++ .|++|++++|.+...-..
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~--~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP--HLRELNLGDCLLENEGAI 259 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc--hheeecccccccccccHH
Confidence 3344445555544444211 223444555555555555555444333322 111111 255555555555432222
Q ss_pred cc-----CCCCCCCEEeCCCCccCcc----ccccccCCCCCCEEEccCccC
Q 045210 416 QI-----GNFKNLDSLDLSFNNISGH----IPLSLGQLSSLRYLDVSTNNL 457 (873)
Q Consensus 416 ~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 457 (873)
.+ ...|+|+.+.+.+|.++.. +...+...+.|..|+|++|++
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11 2356677777777766522 222344566777777777776
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.2e-12 Score=127.91 Aligned_cols=212 Identities=21% Similarity=0.200 Sum_probs=137.3
Q ss_pred CCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCcccc-CCC
Q 045210 168 NLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSF-ANF 246 (873)
Q Consensus 168 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l 246 (873)
++.+|+...|.++.+...+.. +....|++++.|||++|-+............+|+|+.|.++.|++........ ..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 445555555555554443332 23455666666666666665554445556677777777777777654433222 356
Q ss_pred CCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCc--hhhhcCCCcCE
Q 045210 247 SSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVP--DWFNKFIDLEY 324 (873)
Q Consensus 247 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~ 324 (873)
+.|+.|.++.|.++...+...+..+++|+.|+|..|...........-++.|++|+|++|.+.. .+ ...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 7888999999998866666677888999999999886333333444556788999999988763 33 44678888888
Q ss_pred EEccCCcCCcc-Cccc-----ccCCCCCCEEeCCCCcCCCc-chhhhhcCCCCCEEEccCCcCcc
Q 045210 325 LSLSYNELQGS-IPGS-----LGNLTSIKSLDLSFNRLESK-IPRAFKRLRHLRSVNLSGNKLSQ 382 (873)
Q Consensus 325 L~L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~ 382 (873)
|+++.+.+... .|+. ...+++|++|++..|++... .-..+..+++|+.|.+..|.+..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 98888887642 2322 24567888888888887532 11234455666666666666654
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=7.7e-11 Score=130.43 Aligned_cols=179 Identities=35% Similarity=0.467 Sum_probs=108.0
Q ss_pred CCCCceEeccCCcccCCCChhhhccc-cCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEE
Q 045210 615 SMRLQVLNLGNNTLSGEIPDCWMNWS-FLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLF 693 (873)
Q Consensus 615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 693 (873)
.+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..++.+++|+.|++++|+++ .+|...+..+.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 345666666666666 4444445553 6667777777666 44455666677777777777766 444444466667777
Q ss_pred EccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhh
Q 045210 694 DISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKF 773 (873)
Q Consensus 694 ~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~ 773 (873)
++++|++. .+|..+.. ...|+++.+++|+.. .++..+..+..+..+.+.+|++.. +|..++.+..
T Consensus 192 ~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~----------- 256 (394)
T COG4886 192 DLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSN----------- 256 (394)
T ss_pred eccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccc-----------
Confidence 77777766 66665432 455777777777533 344456666666666666666652 2333333333
Q ss_pred chhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCC
Q 045210 774 FEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIP 835 (873)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 835 (873)
++.|++++|.++ .++. ++.+.+++.|++++|.++...|
T Consensus 257 ----------------------l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 257 ----------------------LETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ----------------------cceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 366777777776 4444 6677777777777776664444
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.4e-11 Score=125.81 Aligned_cols=165 Identities=28% Similarity=0.280 Sum_probs=86.1
Q ss_pred cCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCc--ccccCCCCCcEEECCCCCCCCCccCccccccC
Q 045210 118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIP--HQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSH 195 (873)
Q Consensus 118 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 195 (873)
.+++.||...|.++.+....+-.....|++++.|||+.|-+...-| .-...+++|+.|+++.|++..-..... -..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~--~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT--TLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc--hhh
Confidence 4566777777777666543222355667777777777765543221 223456777777777776543322211 124
Q ss_pred CCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCc
Q 045210 196 LSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLV 275 (873)
Q Consensus 196 l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 275 (873)
++.|+.|.++.|.++. .+.......+|+|+.|++..|....+......-++.|+.|||++|++-+.......+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 4556666666666652 222233445566666666665433333333444455555555555554333333444455555
Q ss_pred EEEccCCcCC
Q 045210 276 FLDLSTNNFQ 285 (873)
Q Consensus 276 ~L~L~~n~l~ 285 (873)
.|+++.+.+.
T Consensus 275 ~Lnls~tgi~ 284 (505)
T KOG3207|consen 275 QLNLSSTGIA 284 (505)
T ss_pred hhhccccCcc
Confidence 5555555443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=3.1e-10 Score=106.63 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=11.6
Q ss_pred hcCCCCCCEEECCCCCCCCCC---chhhhcCCCcCEEEc
Q 045210 292 IQNSTSLQHLDLSRNHFSSSV---PDWFNKFIDLEYLSL 327 (873)
Q Consensus 292 l~~l~~L~~L~l~~n~l~~~~---p~~l~~l~~L~~L~L 327 (873)
+..+++|++|++.+|.++... ...+..+|+|+.||-
T Consensus 109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 334444444444444443210 112344555555543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=3.9e-10 Score=105.88 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=31.8
Q ss_pred ccCCCCCCeecCCCCCCCCCCCCcccc-CCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccc-c
Q 045210 117 LLGLKHLIHLDLSYNDFQGIQIPRFLG-SLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWV-S 194 (873)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l-~ 194 (873)
+.+..++++|+|.+|.++.+ +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|+|+.+... + .
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~----l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEG----LDK 85 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHH----HHH
T ss_pred cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccc----hHH
Confidence 34555678888888888753 2354 567888888888887653 2466777888888888877766432 2 3
Q ss_pred CCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCC
Q 045210 195 HLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLH 236 (873)
Q Consensus 195 ~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 236 (873)
.+++|++|++++|++....+. ..+..+++|++|++.+|++.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp H-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGG
T ss_pred hCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCccc
Confidence 466677777777766665442 23334445555555444443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=5.7e-10 Score=108.28 Aligned_cols=136 Identities=29% Similarity=0.355 Sum_probs=101.9
Q ss_pred CCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCE
Q 045210 245 NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEY 324 (873)
Q Consensus 245 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 324 (873)
..+.|+.+||++|.++ .+-+++.-.++++.|+++.|.+... ..+..+++|++||+++|.++ .+..|-.++.+++.
T Consensus 282 TWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 3467888888888874 5666777778888888888888732 33778888888888888877 55666677888888
Q ss_pred EEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcc-hhhhhcCCCCCEEEccCCcCcchhhHH
Q 045210 325 LSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI-PRAFKRLRHLRSVNLSGNKLSQEISQV 387 (873)
Q Consensus 325 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~ 387 (873)
|.|++|.+.. -..++.+-+|..||+++|+|.... -..++++|-|+++.+.+|.+.+.+...
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence 8888888762 235777888888888888886432 346788888888888888887765443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=4.5e-10 Score=108.99 Aligned_cols=134 Identities=27% Similarity=0.293 Sum_probs=88.5
Q ss_pred cccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcC
Q 045210 684 LQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGM 763 (873)
Q Consensus 684 l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 763 (873)
+.....|+++|+|+|.++ .+.+.+-- .|.++.|+++.|.+... +.+..+++|+.||||+|.++ .+-.+-.++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KL--- 351 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKL--- 351 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhh-ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhh---
Confidence 333456777777777776 56666543 67777788887777644 34677788888888888776 221111111
Q ss_pred chhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCccc-CCccccCCC
Q 045210 764 AKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR-IPVNMGAMK 842 (873)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~ 842 (873)
...+.|.|+.|.+.. -+.++.+-+|..||++.|++... --..+|+++
T Consensus 352 ------------------------------GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP 399 (490)
T KOG1259|consen 352 ------------------------------GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP 399 (490)
T ss_pred ------------------------------cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhccccccc
Confidence 223677788877642 34477777788888888877632 234677888
Q ss_pred CCCeEeccCCccccc
Q 045210 843 SVEALDFSSNRLQGE 857 (873)
Q Consensus 843 ~L~~L~ls~N~l~g~ 857 (873)
.|+.+.+.+|++.+.
T Consensus 400 CLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 400 CLETLRLTGNPLAGS 414 (490)
T ss_pred HHHHHhhcCCCcccc
Confidence 888888888888764
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=1.8e-09 Score=127.24 Aligned_cols=107 Identities=29% Similarity=0.328 Sum_probs=70.5
Q ss_pred CCCCCeecCCCCC--CCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCC
Q 045210 120 LKHLIHLDLSYND--FQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS 197 (873)
Q Consensus 120 l~~L~~L~Ls~n~--~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~ 197 (873)
.+.|+.|-+.+|. +... .+.+|..++.|++|||++|.-.+.+|..++.|-+||+|+++++.+..+|.. +.+++
T Consensus 544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~----l~~Lk 618 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG----LGNLK 618 (889)
T ss_pred CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH----HHHHH
Confidence 3467777777775 3332 345677788888888888777777888888888888888888887777766 67777
Q ss_pred CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCC
Q 045210 198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC 233 (873)
Q Consensus 198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n 233 (873)
+|.+|++..+...... +.....+++|++|.+...
T Consensus 619 ~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhheeccccccccccc--cchhhhcccccEEEeecc
Confidence 7777777765433222 223333555555554433
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=1.2e-08 Score=120.22 Aligned_cols=86 Identities=34% Similarity=0.403 Sum_probs=43.1
Q ss_pred hcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCC
Q 045210 268 VLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIK 347 (873)
Q Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 347 (873)
+..++.|++|||++|.--+.+|+.++.+-+|++|+++++.+. .+|..+++++.|.+|++..+.....+|.....+++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 344455555555544444445555555555555555555554 4555555555555555555443333344444455555
Q ss_pred EEeCCCC
Q 045210 348 SLDLSFN 354 (873)
Q Consensus 348 ~L~L~~n 354 (873)
+|.+...
T Consensus 646 ~L~l~~s 652 (889)
T KOG4658|consen 646 VLRLPRS 652 (889)
T ss_pred EEEeecc
Confidence 5555443
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.74 E-value=9e-09 Score=72.17 Aligned_cols=41 Identities=51% Similarity=1.006 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhcCC-CCCCCcCCCccCCCCCCccceeeEec
Q 045210 37 ESEREALLSFKQDLE-DPSNRLASWNNIGVGDCCKWYGVVCD 77 (873)
Q Consensus 37 ~~~~~~ll~~k~~~~-~~~~~~~~W~~~~~~~~c~w~gv~c~ 77 (873)
++|++||++||+++. +|.+.+.+|+..+..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999997 57789999984312799999999995
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=2.5e-09 Score=118.35 Aligned_cols=129 Identities=33% Similarity=0.343 Sum_probs=73.6
Q ss_pred CCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCC
Q 045210 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSL 198 (873)
Q Consensus 119 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~ 198 (873)
.+..+..+++..|.+.. +-..++.+++|.+|++.+|.+..... .+..+++|++|++++|.|+.+.. +..++.
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~-----l~~l~~ 141 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG-----LSTLTL 141 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc-----hhhccc
Confidence 45556666666666654 22345666777777777777654322 25667777777777777665543 455555
Q ss_pred CcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCc-cccCCCCCccEEEcCCCCCC
Q 045210 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP-LSFANFSSLVTLDISDNQFA 260 (873)
Q Consensus 199 L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~ 260 (873)
|+.|++++|.++..... ..++.|+.+++++|++..+.+ . ...+.+++.+++.+|.+.
T Consensus 142 L~~L~l~~N~i~~~~~~----~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 142 LKELNLSGNLISDISGL----ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhheeccCcchhccCC----ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 66666666666655432 225555555555555555444 2 344455555555555443
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.2e-10 Score=108.65 Aligned_cols=183 Identities=26% Similarity=0.207 Sum_probs=108.5
Q ss_pred CCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCC-CCCCccCccccccCCCCC
Q 045210 121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNY-LGGLYVEDFGWVSHLSLL 199 (873)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~l~~L 199 (873)
+.|++||||...++...+-..+..|.+|+.|.|.++.+.+.+-..+++-.+|+.|+++.+. +++-.... .+.+++.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l--l~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL--LLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH--HHHhhhhH
Confidence 3588999998888765556667888999999999999988888888888899999988764 22111110 13455555
Q ss_pred cEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCC--CCCCchhHhhcCCCCCcEE
Q 045210 200 KHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ--FADSSIVNQVLGLVNLVFL 277 (873)
Q Consensus 200 ~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L 277 (873)
..|+++.|.+...........-- .+|+.|+++++. +.+..+......+++|..|
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~his------------------------e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHIS------------------------ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhc------------------------hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 55555555444332111111111 345555555542 2222333344566666666
Q ss_pred EccCCc-CCCCChhhhcCCCCCCEEECCCCCCCCCCchh---hhcCCCcCEEEccCCc
Q 045210 278 DLSTNN-FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW---FNKFIDLEYLSLSYNE 331 (873)
Q Consensus 278 ~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~L~~L~L~~n~ 331 (873)
||++|. ++......+.+++.|++|.++.|.. .+|.. +...|.|.+|+..++-
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 666553 3333444556666677777766652 34443 3456677777776653
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=2.2e-08 Score=77.12 Aligned_cols=60 Identities=35% Similarity=0.465 Sum_probs=55.1
Q ss_pred cceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcc
Q 045210 795 YLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL 854 (873)
Q Consensus 795 ~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 854 (873)
.|+.|++++|+++..-+..+..+++|++|++++|.++...|..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468999999999966667889999999999999999988888999999999999999985
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=8.8e-09 Score=113.98 Aligned_cols=170 Identities=29% Similarity=0.316 Sum_probs=78.6
Q ss_pred CCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEecc
Q 045210 545 QINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLG 624 (873)
Q Consensus 545 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls 624 (873)
.++.+.+..|.+......+..+.+|+.+++.+|.+.+.... +..+++|++|+++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~--------------------------l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL--------------------------LSSLVNLQVLDLS 126 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc--------------------------hhhhhcchheecc
Confidence 44444455555544333345555555555555555433220 1224445555555
Q ss_pred CCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCC-cccccCCCCcEEEccCCeeccc
Q 045210 625 NNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIP-VSLQNCTELRLFDISENEFVGN 703 (873)
Q Consensus 625 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ 703 (873)
+|.|+... .+..++.|+.|++++|.+... ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+. .
T Consensus 127 ~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~ 200 (414)
T KOG0531|consen 127 FNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-E 200 (414)
T ss_pred cccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-c
Confidence 55554322 233444455555555555521 234445555555666655553333 2 344555566666666554 1
Q ss_pred CChhHHhhcccCcEEEccCCeeeeeCCcccCCCCC--CCEEeCCCCccc
Q 045210 704 IPTWIGERLSGIILLSLRANQFHGFFPPELCGLAS--LKILDLSSNNLT 750 (873)
Q Consensus 704 ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~ 750 (873)
+. ++.. +..+..+++..|.++..- .+..+.. |+.+++++|++.
T Consensus 201 i~-~~~~-~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 201 IE-GLDL-LKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred cc-chHH-HHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc
Confidence 21 1111 333344455555554331 1222222 555666666555
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=5.2e-08 Score=75.02 Aligned_cols=58 Identities=33% Similarity=0.473 Sum_probs=25.8
Q ss_pred CcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCe
Q 045210 642 LFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENE 699 (873)
Q Consensus 642 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 699 (873)
|++|++++|++....+..|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444444444443333344444444444444444444444444444444444444443
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.42 E-value=5.4e-08 Score=93.66 Aligned_cols=95 Identities=26% Similarity=0.320 Sum_probs=57.2
Q ss_pred ccCCCCCCeecCCCCCCCCC---CCCccccCCCCCCEEeccCCcCCCC----Cc-------ccccCCCCCcEEECCCCCC
Q 045210 117 LLGLKHLIHLDLSYNDFQGI---QIPRFLGSLENLMYLNISRAGFVGI----IP-------HQIGNLSNLQFLDLRPNYL 182 (873)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~---~~~~~l~~l~~L~~L~L~~n~l~~~----~p-------~~l~~l~~L~~L~L~~n~l 182 (873)
+..+..+..+|||+|.|... .+...+.+-.+|+..++++-. +|. +| .++-+|++|+..+||.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 33466677777777776543 123334555667777776532 222 22 3445778888888888877
Q ss_pred CCCccCcc-ccccCCCCCcEEeCCCCCCCCC
Q 045210 183 GGLYVEDF-GWVSHLSLLKHLDLSGVDLSKT 212 (873)
Q Consensus 183 ~~l~~~~~-~~l~~l~~L~~L~L~~~~l~~~ 212 (873)
..-.+..+ ..+++-..|+||.+++|.+...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 64333332 3466777777777777776554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.9e-08 Score=96.72 Aligned_cols=179 Identities=24% Similarity=0.241 Sum_probs=106.2
Q ss_pred CCCEEECCCCCCCCC-CchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCc-CCCc-chhhhhcCCCCCEE
Q 045210 297 SLQHLDLSRNHFSSS-VPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR-LESK-IPRAFKRLRHLRSV 373 (873)
Q Consensus 297 ~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L 373 (873)
.|+++|++...++.. +-.-+..|.+|+.|.+.++++.+.+...++.-.+|+.++++.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666555421 22334566677777777777766666666677777777777653 3321 12245677777788
Q ss_pred EccCCcCcchhhHHHHHhhhcccccccEEEccCcccC---CccccccCCCCCCCEEeCCCCc-cCccccccccCCCCCCE
Q 045210 374 NLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLF---GLLTNQIGNFKNLDSLDLSFNN-ISGHIPLSLGQLSSLRY 449 (873)
Q Consensus 374 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~ 449 (873)
++++|.+......+. ..... .+|+.|+++++.-. ..+..-...||+|.+|||++|. ++......|.+++.|++
T Consensus 266 NlsWc~l~~~~Vtv~--V~his-e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVA--VAHIS-ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred CchHhhccchhhhHH--Hhhhc-hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 888777766543322 11222 33888888876421 1122223568888888888874 44444456778888888
Q ss_pred EEccCccCCcccChh--hhhcccccceEEcCCC
Q 045210 450 LDVSTNNLNGTLSEN--HFANLTKLVGFDASGN 480 (873)
Q Consensus 450 L~L~~n~l~~~~~~~--~~~~l~~L~~L~l~~n 480 (873)
|.++.|.. .+|.. .+...++|.+|++.++
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 88888863 23321 2345566666666554
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=9.7e-08 Score=93.16 Aligned_cols=91 Identities=24% Similarity=0.190 Sum_probs=64.8
Q ss_pred cCCCCCCeecCCCCCCCCC-CCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCC
Q 045210 118 LGLKHLIHLDLSYNDFQGI-QIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHL 196 (873)
Q Consensus 118 ~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l 196 (873)
..+++++.+||.+|.+++. ++...+.++++|++|+|+.|.+...|-..=..+.+|++|.|.+..+..-....+ +..+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~--l~~l 145 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS--LDDL 145 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh--hhcc
Confidence 3568899999999998765 345566789999999999998775433222456788889888887764444333 6677
Q ss_pred CCCcEEeCCCCCCC
Q 045210 197 SLLKHLDLSGVDLS 210 (873)
Q Consensus 197 ~~L~~L~L~~~~l~ 210 (873)
++++.|.++.|.+.
T Consensus 146 P~vtelHmS~N~~r 159 (418)
T KOG2982|consen 146 PKVTELHMSDNSLR 159 (418)
T ss_pred hhhhhhhhccchhh
Confidence 77777777777443
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=4.5e-08 Score=106.45 Aligned_cols=180 Identities=27% Similarity=0.274 Sum_probs=118.9
Q ss_pred ChhhhccccCcEEEcCCCcCccCCcccccCC-CCccEEEccCCccc----------ccCCcccccCCCCcEEEccCCeec
Q 045210 633 PDCWMNWSFLFFLHLGENDFTGNLPTSLGTL-SSLQILHLRGNRFS----------GKIPVSLQNCTELRLFDISENEFV 701 (873)
Q Consensus 633 p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~Ls~n~l~ 701 (873)
|-.+..+.+|+.|.+.+|.+... ..+..+ ..|+.|. .+|.+. |.+..++. ...|...+.++|.++
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 44566677888888888877631 111111 1222221 222211 11111111 125777888899887
Q ss_pred ccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeee
Q 045210 702 GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVY 781 (873)
Q Consensus 702 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~ 781 (873)
.+...+. -++.++.|+|++|+++.. +.+..++.|+.|||++|.++ .+|.. +. .
T Consensus 178 -~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l-~~-~-------------------- 230 (1096)
T KOG1859|consen 178 -LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQL-SM-V-------------------- 230 (1096)
T ss_pred -hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-ccccc-ch-h--------------------
Confidence 5666655 389999999999999876 37888999999999999998 55531 10 0
Q ss_pred cccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccC-CccccCCCCCCeEeccCCcccc
Q 045210 782 KKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI-PVNMGAMKSVEALDFSSNRLQG 856 (873)
Q Consensus 782 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g 856 (873)
--+|+.|.|++|.++. -..+.+|++|+.||+|+|-+++-- -..+..+..|..|.|-+|++..
T Consensus 231 -----------gc~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 231 -----------GCKLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -----------hhhheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 0125789999999873 245889999999999999887542 1234567889999999999863
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.14 E-value=7.4e-06 Score=79.27 Aligned_cols=88 Identities=27% Similarity=0.374 Sum_probs=41.3
Q ss_pred CCCCCCEEEccCCCCCCCCcccc----CCCCCccEEEcCCCCCCC--Cch-------hHhhcCCCCCcEEEccCCcCCCC
Q 045210 221 SLHSLETLRFSGCLLHHISPLSF----ANFSSLVTLDISDNQFAD--SSI-------VNQVLGLVNLVFLDLSTNNFQGA 287 (873)
Q Consensus 221 ~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~--~~~-------~~~~~~l~~L~~L~L~~n~l~~~ 287 (873)
.+..+.++++++|.|......++ .+-.+|+..++++-.... ..+ ...+.+|++|+..+||.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35566666666666655443333 333556666555432110 111 12334455555555555555433
Q ss_pred Chhh----hcCCCCCCEEECCCCCC
Q 045210 288 VPDA----IQNSTSLQHLDLSRNHF 308 (873)
Q Consensus 288 ~~~~----l~~l~~L~~L~l~~n~l 308 (873)
.|+. +...+.|++|.+++|.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCC
Confidence 3322 23344555555555543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=3.2e-07 Score=79.14 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=14.0
Q ss_pred CCcEEEccCCeecccCChhHHhhcccCcEEEccCCee
Q 045210 689 ELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF 725 (873)
Q Consensus 689 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l 725 (873)
..+.+++++|.++ .+|.++.. ++.|+.|+++.|++
T Consensus 78 t~t~lNl~~neis-dvPeE~Aa-m~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAA-MPALRSLNLRFNPL 112 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhh-hHHhhhcccccCcc
Confidence 3444444444443 34444332 34444444444333
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=6.4e-06 Score=87.17 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=86.9
Q ss_pred ccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCC
Q 045210 660 LGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASL 739 (873)
Q Consensus 660 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 739 (873)
+..+.+++.|++++|.++ .+|. + -.+|+.|++++|.-...+|..+ .++|+.|++++|.....+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence 455789999999999877 5562 2 3469999999876555778655 46899999999944335554 57
Q ss_pred CEEeCCCCcc--ccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcC
Q 045210 740 KILDLSSNNL--TGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNL 817 (873)
Q Consensus 740 ~~L~Ls~N~l--~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l 817 (873)
+.|+++++.. .+.+|+.+..|.- .. +. .......+..+|.+|+.|++++|... .+|+.+.
T Consensus 115 e~L~L~~n~~~~L~~LPssLk~L~I------~~---~n------~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP-- 176 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPNGLTSLSI------NS---YN------PENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP-- 176 (426)
T ss_pred ceEEeCCCCCcccccCcchHhheec------cc---cc------cccccccccccCCcccEEEecCCCcc-cCccccc--
Confidence 7778877654 2456665543321 00 00 00001111123677888888887765 3454444
Q ss_pred CCCCeeeCCCC
Q 045210 818 VGLQTLKLSHN 828 (873)
Q Consensus 818 ~~L~~L~Ls~N 828 (873)
.+|+.|++++|
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 47788888776
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=1.7e-06 Score=84.76 Aligned_cols=183 Identities=21% Similarity=0.225 Sum_probs=104.8
Q ss_pred ccEEEccCcccCC--ccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEE
Q 045210 399 LESLDLSNNTLFG--LLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFD 476 (873)
Q Consensus 399 L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 476 (873)
++++||.+|.++. .+...+.++|.|+.|+++.|++...|...-....+|+.|.|.+..+.-.-....+..++.++.++
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 6666777766655 23344567888888888888877444322145677888888777665444444567788888888
Q ss_pred cCCCeeeccccCCCCCC--CccccEEeccccccCC--CcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEecc
Q 045210 477 ASGNSLVLKVVSPSWTP--PFQLQAIGLSSCFIGP--QFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLS 552 (873)
Q Consensus 477 l~~n~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~ 552 (873)
++.|++......+.... .+.++++....|...- .....-.-++++..+-+..|.+...-...-+..+|.+..|+++
T Consensus 153 mS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~ 232 (418)
T KOG2982|consen 153 MSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLG 232 (418)
T ss_pred hccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhc
Confidence 88885433222221111 1133334333332110 0001112245566666666666554444444555666677777
Q ss_pred CcccccccC--CccccCCCCeEeCCCCCCCC
Q 045210 553 YNQIFGQIP--DLNDAAQLETLDLSSNSLSG 581 (873)
Q Consensus 553 ~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~ 581 (873)
.+++..... .+..+++|..|.++++++..
T Consensus 233 ~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 233 ANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 777765433 56667777777777766653
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=3.6e-07 Score=78.87 Aligned_cols=82 Identities=27% Similarity=0.380 Sum_probs=38.1
Q ss_pred ccEEEccCCcccccCCcc---cccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEE
Q 045210 666 LQILHLRGNRFSGKIPVS---LQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKIL 742 (873)
Q Consensus 666 L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 742 (873)
+..++|++|++. .++.. +.....|+..+|++|.+. .+|..+...++.++.+++++|.++ .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344555555543 22222 223334444555555555 455444443444455555555544 334444445555555
Q ss_pred eCCCCccc
Q 045210 743 DLSSNNLT 750 (873)
Q Consensus 743 ~Ls~N~l~ 750 (873)
+++.|++.
T Consensus 106 Nl~~N~l~ 113 (177)
T KOG4579|consen 106 NLRFNPLN 113 (177)
T ss_pred ccccCccc
Confidence 55555444
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=4e-07 Score=99.31 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=17.1
Q ss_pred cccccCCCCCCEEEccCCCCCC
Q 045210 216 PLITNSLHSLETLRFSGCLLHH 237 (873)
Q Consensus 216 ~~~~~~l~~L~~L~L~~n~l~~ 237 (873)
+..+..+.+|++|.+.+|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred CceeccccceeeEEecCcchhh
Confidence 5566778889999999888764
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=9.4e-06 Score=85.95 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=64.0
Q ss_pred hhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhccc
Q 045210 635 CWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSG 714 (873)
Q Consensus 635 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~ 714 (873)
.+..+..++.|++++|.++ .+|. + .++|++|.+++|.-...+|..+. ++|+.|++++|.....+| ++
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-------~s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-------ES 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-------cc
Confidence 3556788999999999887 5662 2 35799999998776667776553 589999999984333454 35
Q ss_pred CcEEEccCCeee--eeCCcccCCCCCCCEEeCCC
Q 045210 715 IILLSLRANQFH--GFFPPELCGLASLKILDLSS 746 (873)
Q Consensus 715 L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~ 746 (873)
|+.|+++++... +.+|. +|+.|.+.+
T Consensus 114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~ 141 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN------GLTSLSINS 141 (426)
T ss_pred cceEEeCCCCCcccccCcc------hHhheeccc
Confidence 677778766542 23443 466777654
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.88 E-value=4.8e-07 Score=92.78 Aligned_cols=301 Identities=20% Similarity=0.181 Sum_probs=168.7
Q ss_pred CCCCeecCCCCCCCC-CCCCccccCCCCCCEEeccCCc-CCCCCcccc-cCCCCCcEEECCCCC-CCCCccCccc-cccC
Q 045210 121 KHLIHLDLSYNDFQG-IQIPRFLGSLENLMYLNISRAG-FVGIIPHQI-GNLSNLQFLDLRPNY-LGGLYVEDFG-WVSH 195 (873)
Q Consensus 121 ~~L~~L~Ls~n~~~~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~-l~~l~~~~~~-~l~~ 195 (873)
..|+.|.+.++.-.+ ..+-.+..+++++++|++.++. ++...-.++ ..|++|+++++..|. ++.. .+. ....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~---~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV---SLKYLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH---HHHHHHHh
Confidence 356777777665322 2234455677788888777774 222222223 457788888887742 2221 111 2346
Q ss_pred CCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCc--cccCCCCCccEEEcCCC-CCCCCchhHhhcCCC
Q 045210 196 LSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP--LSFANFSSLVTLDISDN-QFADSSIVNQVLGLV 272 (873)
Q Consensus 196 l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~ 272 (873)
+++|++++++.+.-...........++..++.+.+.+|.-.+... ..=+.+..+.++++..+ .+++..+...-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 788888888877533322223334556667777666654222111 11134455666665554 456555555666778
Q ss_pred CCcEEEccCCcCCC-CChhhh-cCCCCCCEEECCCCCC-CCCCchhh-hcCCCcCEEEccCCcCCc--cCcccccCCCCC
Q 045210 273 NLVFLDLSTNNFQG-AVPDAI-QNSTSLQHLDLSRNHF-SSSVPDWF-NKFIDLEYLSLSYNELQG--SIPGSLGNLTSI 346 (873)
Q Consensus 273 ~L~~L~L~~n~l~~-~~~~~l-~~l~~L~~L~l~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L 346 (873)
.|++++.+++...+ ..-.++ .++.+|+.+.+++++- +..--..+ .+++.|+.+++..+.... .+...-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 88888888775432 222233 4678888888888763 22111222 367788888888776431 122223477888
Q ss_pred CEEeCCCCcCCCcc-----hhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC--ccccccCC
Q 045210 347 KSLDLSFNRLESKI-----PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG--LLTNQIGN 419 (873)
Q Consensus 347 ~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~ 419 (873)
+.+.+++|...... ...-..+..|+.+.+++++..... .......|. .|+.+++-+++-.. .+...-..
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~--~Le~l~~c~--~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA--TLEHLSICR--NLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH--HHHHHhhCc--ccceeeeechhhhhhhhhHHHHhh
Confidence 88888877543211 111234567888888888765432 223344444 28888888776432 12222345
Q ss_pred CCCCCEEeC
Q 045210 420 FKNLDSLDL 428 (873)
Q Consensus 420 l~~L~~L~L 428 (873)
+|+++...+
T Consensus 451 lp~i~v~a~ 459 (483)
T KOG4341|consen 451 LPNIKVHAY 459 (483)
T ss_pred Cccceehhh
Confidence 666655443
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.82 E-value=3.2e-06 Score=86.93 Aligned_cols=256 Identities=20% Similarity=0.195 Sum_probs=117.0
Q ss_pred cCCCCCCEEEccCCC-CCCCCcccc-CCCCCccEEEcCCC-CCCCCchhHhhcCCCCCcEEEccCCc-CCCC-ChhhhcC
Q 045210 220 NSLHSLETLRFSGCL-LHHISPLSF-ANFSSLVTLDISDN-QFADSSIVNQVLGLVNLVFLDLSTNN-FQGA-VPDAIQN 294 (873)
Q Consensus 220 ~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~ 294 (873)
..++++++|.+.+|. ++...-..+ ..|++|++|++..| .+++..+.....++++|++++++++. +++. +-....+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 445555555555554 111111111 34667777777664 33322222244567777777777764 2221 2223344
Q ss_pred CCCCCEEECCCCCCCCCCchhh----hcCCCcCEEEccCCc-CCccCc-ccccCCCCCCEEeCCCCcC-CCcchhhh-hc
Q 045210 295 STSLQHLDLSRNHFSSSVPDWF----NKFIDLEYLSLSYNE-LQGSIP-GSLGNLTSIKSLDLSFNRL-ESKIPRAF-KR 366 (873)
Q Consensus 295 l~~L~~L~l~~n~l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~l-~~~~~~~l-~~ 366 (873)
++.++.+.+.+|.-.+ -+.+ +.+..+..+++..|. ++...- ..=..+..|+.++.+++.. +......+ .+
T Consensus 241 ~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred chhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 5556666555543211 1111 223344555554443 221110 0012455666776666543 22222222 34
Q ss_pred CCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC--ccccccCCCCCCCEEeCCCCccC-ccc----cc
Q 045210 367 LRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG--LLTNQIGNFKNLDSLDLSFNNIS-GHI----PL 439 (873)
Q Consensus 367 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~-~~~----~~ 439 (873)
..+|+.+.+.+++--+. ..+..+.....+ |+.+++..+.... .+...-.+++.|+.+.+++|... +.. ..
T Consensus 319 ~~~L~~l~l~~c~~fsd--~~ft~l~rn~~~-Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSD--RGFTMLGRNCPH-LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred CCceEEEeccccchhhh--hhhhhhhcCChh-hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 56666666666653111 111112222212 6666666654322 12222345667777777766432 110 11
Q ss_pred cccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCC
Q 045210 440 SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480 (873)
Q Consensus 440 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 480 (873)
.-..+..|..+.+++++.+.+-....+..++.|+.+++.++
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 22344566667777666554433344555556655555544
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=1.8e-05 Score=55.46 Aligned_cols=35 Identities=46% Similarity=0.676 Sum_probs=15.9
Q ss_pred ceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCc
Q 045210 796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS 831 (873)
Q Consensus 796 L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 831 (873)
|++|++++|+++ .+|.++++|++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444555555544 34444444444444444444444
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=3.6e-05 Score=53.95 Aligned_cols=37 Identities=32% Similarity=0.516 Sum_probs=18.1
Q ss_pred CCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCC
Q 045210 147 NLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGG 184 (873)
Q Consensus 147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 184 (873)
+|++|++++|+++. +|..+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 45555555555542 34345555555555555555443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=2.4e-05 Score=90.43 Aligned_cols=107 Identities=23% Similarity=0.358 Sum_probs=59.7
Q ss_pred ccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCC-CCccccCCCCCccEEEcCCCCCCCCc-hh----H
Q 045210 193 VSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHH-ISPLSFANFSSLVTLDISDNQFADSS-IV----N 266 (873)
Q Consensus 193 l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~-~~----~ 266 (873)
+.++++|+.||+|+++++.+ ..++.+++|++|.+.+-.+.. ..-..+.++++|++||+|.....+.. +. +
T Consensus 169 c~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYle 244 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLE 244 (699)
T ss_pred hhccCccceeecCCCCccCc----HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHH
Confidence 34455555555555555444 234555555555555555443 22234566788888888877654332 22 2
Q ss_pred hhcCCCCCcEEEccCCcCCCCChhhh-cCCCCCCEEEC
Q 045210 267 QVLGLVNLVFLDLSTNNFQGAVPDAI-QNSTSLQHLDL 303 (873)
Q Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l 303 (873)
.-..+++|+.||.|++.+.+.+-+.+ ...++|+.+..
T Consensus 245 c~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 245 CGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred hcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 22357889999988887775544333 34455555443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=5.6e-05 Score=87.42 Aligned_cols=84 Identities=26% Similarity=0.283 Sum_probs=38.5
Q ss_pred CCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCC-CCchhhhcCCCcCE
Q 045210 246 FSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEY 324 (873)
Q Consensus 246 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~ 324 (873)
+|.|+.|.+++-.+..........++++|..||+|+++++.. ..++++++|++|.+.+=.+.. ..-..+.++++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 345555555554444333444444555555555555555422 344555555555554433331 11122334555555
Q ss_pred EEccCCc
Q 045210 325 LSLSYNE 331 (873)
Q Consensus 325 L~L~~n~ 331 (873)
||+|..+
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 5555443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.00019 Score=66.90 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=46.3
Q ss_pred cEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEc
Q 045210 200 KHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDL 279 (873)
Q Consensus 200 ~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 279 (873)
..+||++|++...+. +..++.|.+|.+++|+|+.+.|..-.-+++|..|.|.+|.+..-.-...+..|++|++|.+
T Consensus 45 d~iDLtdNdl~~l~~----lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDN----LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ceecccccchhhccc----CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344444454444432 3345666666666676666666555555667777777766653333344455566666666
Q ss_pred cCCcCC
Q 045210 280 STNNFQ 285 (873)
Q Consensus 280 ~~n~l~ 285 (873)
-+|.++
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 555544
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.27 E-value=0.00045 Score=64.53 Aligned_cols=90 Identities=24% Similarity=0.184 Sum_probs=44.7
Q ss_pred cCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCc---ccc
Q 045210 167 GNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP---LSF 243 (873)
Q Consensus 167 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l 243 (873)
..++.|.+|.+.+|+|+.+.+.. -.-+++|..|.+.+|.+..+.+ ...+..+|+|++|.+-+|.++...- -.+
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~LtnNsi~~l~d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTNNSIQELGD-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCccccceEEecCCcceeeccch---hhhccccceEEecCcchhhhhh-cchhccCCccceeeecCCchhcccCceeEEE
Confidence 33444444444444444433321 1223344444444444444332 1223455666666666665554432 345
Q ss_pred CCCCCccEEEcCCCCCC
Q 045210 244 ANFSSLVTLDISDNQFA 260 (873)
Q Consensus 244 ~~l~~L~~L~L~~n~l~ 260 (873)
..+++|+.||+......
T Consensus 137 ~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKVTRK 153 (233)
T ss_pred EecCcceEeehhhhhHH
Confidence 67788888888876554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00018 Score=70.30 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=64.8
Q ss_pred eeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCC--cCCCCCcccccCCCCCcEEECCCCCCCCCcc
Q 045210 110 VGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRA--GFVGIIPHQIGNLSNLQFLDLRPNYLGGLYV 187 (873)
Q Consensus 110 ~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~ 187 (873)
.|.+..-.-.+..|+.|++.+..++.. ..+-.+++|++|.++.| +.++.++.-..++++|+++++++|+|..+
T Consensus 32 ~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-- 106 (260)
T KOG2739|consen 32 AGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-- 106 (260)
T ss_pred CCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc--
Confidence 344444445566677777777666542 33556788999999998 66666666666778888898888887652
Q ss_pred CccccccCCCCCcEEeCCCCCCCCC
Q 045210 188 EDFGWVSHLSLLKHLDLSGVDLSKT 212 (873)
Q Consensus 188 ~~~~~l~~l~~L~~L~L~~~~l~~~ 212 (873)
..+.-+..+++|..|++.+|..+..
T Consensus 107 stl~pl~~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNCSVTNL 131 (260)
T ss_pred cccchhhhhcchhhhhcccCCcccc
Confidence 2333356666666666666655554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=8.7e-05 Score=72.35 Aligned_cols=85 Identities=24% Similarity=0.257 Sum_probs=49.2
Q ss_pred CCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcE
Q 045210 197 SLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVF 276 (873)
Q Consensus 197 ~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 276 (873)
.+.+.|++.++.+.++. ...+++.|++|.|+-|+|+...| +..|++|+.|.|..|.+.+-.-..-+.++++|+.
T Consensus 19 ~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 34445555555555442 33456666666666666665533 5566666666666666654444445566666666
Q ss_pred EEccCCcCCCC
Q 045210 277 LDLSTNNFQGA 287 (873)
Q Consensus 277 L~L~~n~l~~~ 287 (873)
|+|..|.-.|.
T Consensus 93 LWL~ENPCc~~ 103 (388)
T KOG2123|consen 93 LWLDENPCCGE 103 (388)
T ss_pred HhhccCCcccc
Confidence 66666655543
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.81 E-value=0.0002 Score=81.95 Aligned_cols=114 Identities=25% Similarity=0.201 Sum_probs=52.2
Q ss_pred CCCCcEEECCCCC-CCCCccCccccccCCCCCcEEeCCCC-CCCC-CCC-ccccccCCCCCCEEEccCCC-CCCCCcccc
Q 045210 169 LSNLQFLDLRPNY-LGGLYVEDFGWVSHLSLLKHLDLSGV-DLSK-TSD-GPLITNSLHSLETLRFSGCL-LHHISPLSF 243 (873)
Q Consensus 169 l~~L~~L~L~~n~-l~~l~~~~~~~l~~l~~L~~L~L~~~-~l~~-~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l 243 (873)
++.|+.+.+..+. +.... .......++.|+.|+++++ .... .+. .......+++|+.|+++.+. ++...-..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 5566666665542 11111 0122345555555555542 1111 110 01122334555555555555 343333333
Q ss_pred CC-CCCccEEEcCCCC-CCCCchhHhhcCCCCCcEEEccCCcC
Q 045210 244 AN-FSSLVTLDISDNQ-FADSSIVNQVLGLVNLVFLDLSTNNF 284 (873)
Q Consensus 244 ~~-l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l 284 (873)
.. +++|+.|.+.++. +++..+......++.|++|+++++..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 32 5566666655554 45445555555556666666665543
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.60 E-value=0.0004 Score=79.38 Aligned_cols=113 Identities=31% Similarity=0.375 Sum_probs=48.0
Q ss_pred CCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCC-CCCCCCc----cccCCCCCccEEEcCCCC-CCCCchhHhh
Q 045210 195 HLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC-LLHHISP----LSFANFSSLVTLDISDNQ-FADSSIVNQV 268 (873)
Q Consensus 195 ~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 268 (873)
.++.|+.+.+..+.-............++.|++|+++++ ......+ .....+++|+.|+++++. +++..+....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666655532222112233445566666666552 1111111 122334555555555554 4433333223
Q ss_pred cCCCCCcEEEccCCc-CCCC-ChhhhcCCCCCCEEECCCCC
Q 045210 269 LGLVNLVFLDLSTNN-FQGA-VPDAIQNSTSLQHLDLSRNH 307 (873)
Q Consensus 269 ~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~ 307 (873)
..+++|++|.+.+|. +++. +-.....++.|++|+++++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 334555555544444 2322 11222334445555555443
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.60 E-value=0.0037 Score=56.58 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=32.7
Q ss_pred cCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCE
Q 045210 269 LGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKS 348 (873)
Q Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 348 (873)
.++++|+.+.+..+ +...-..++.++++++.+.+.. .+.......+..+++|+.+++..+ +.......+.++ .|+.
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~ 107 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE 107 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence 33444444444432 3322233444554555555543 222122234445555666655443 332333344554 5666
Q ss_pred EeCCCCcCCCcchhhhhcCCCC
Q 045210 349 LDLSFNRLESKIPRAFKRLRHL 370 (873)
Q Consensus 349 L~L~~n~l~~~~~~~l~~l~~L 370 (873)
+.+.. .+.......|.++++|
T Consensus 108 i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 108 INIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EE-TT-B-SS----GGG-----
T ss_pred EEECC-CccEECCccccccccC
Confidence 65553 3333333445554443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0012 Score=64.49 Aligned_cols=62 Identities=31% Similarity=0.353 Sum_probs=31.5
Q ss_pred CCCCCCEEECCCC--CCCCCCchhhhcCCCcCEEEccCCcCCccCccc---ccCCCCCCEEeCCCCcCC
Q 045210 294 NSTSLQHLDLSRN--HFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGS---LGNLTSIKSLDLSFNRLE 357 (873)
Q Consensus 294 ~l~~L~~L~l~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~ 357 (873)
.+++|++|.++.| ++.+.++-....+++|+++++++|++.. ++. +..+.+|..|++.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 4455566666665 4444444334445666666666666541 222 334445555555555443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.35 E-value=0.0067 Score=54.87 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=32.0
Q ss_pred cCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEE
Q 045210 614 NSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLF 693 (873)
Q Consensus 614 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 693 (873)
++++|+.+.+.. .+...-..+|.++++|+.+.+.++ +...-...|.++++++.+.+.+ .+.......|..+++|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 355555555553 333333445555555555555553 3322233445555555555543 2222333444445555555
Q ss_pred EccC
Q 045210 694 DISE 697 (873)
Q Consensus 694 ~Ls~ 697 (873)
++..
T Consensus 87 ~~~~ 90 (129)
T PF13306_consen 87 DIPS 90 (129)
T ss_dssp EETT
T ss_pred ccCc
Confidence 5543
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.00026 Score=69.14 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCC
Q 045210 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGG 184 (873)
Q Consensus 120 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 184 (873)
+.+.+.|+..+|.+.++. ...+++.|++|.|+-|.++..-| +..|++|+.|.|+.|.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc
Confidence 556677777777777652 23456667777777766654433 4555555555555555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.82 E-value=0.0036 Score=36.36 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=11.1
Q ss_pred CCeEeccCCcccccccccccc
Q 045210 844 VEALDFSSNRLQGEIPKNMVN 864 (873)
Q Consensus 844 L~~L~ls~N~l~g~iP~~l~~ 864 (873)
|+.||+++|+++ .||+++++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455666666555 55555443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.37 E-value=0.0049 Score=35.78 Aligned_cols=19 Identities=47% Similarity=0.723 Sum_probs=9.9
Q ss_pred ceEEECCCCcccccCChhhh
Q 045210 796 LKVLDLSANYFSGEIPSQVT 815 (873)
Q Consensus 796 L~~L~ls~n~l~~~ip~~l~ 815 (873)
|+.||+++|+++ .||++++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554444
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.97 E-value=0.00042 Score=76.74 Aligned_cols=41 Identities=29% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCeeeCCCCcCccc----CCccccCCCCCCeEeccCCcccccccc
Q 045210 820 LQTLKLSHNFFSGR----IPVNMGAMKSVEALDFSSNRLQGEIPK 860 (873)
Q Consensus 820 L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~ls~N~l~g~iP~ 860 (873)
+..+++..+...+. ++..++....++.+++++|.....-+.
T Consensus 378 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~ 422 (478)
T KOG4308|consen 378 LLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAE 422 (478)
T ss_pred cchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHH
Confidence 33444444444433 444555666777777777766544443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.38 E-value=0.0016 Score=72.27 Aligned_cols=66 Identities=26% Similarity=0.369 Sum_probs=29.0
Q ss_pred cCCCCCccEEEcCCCCCCCCchhHhhcCC----CCCcEEEccCCcCCC----CChhhhcCCCCCCEEECCCCCC
Q 045210 243 FANFSSLVTLDISDNQFADSSIVNQVLGL----VNLVFLDLSTNNFQG----AVPDAIQNSTSLQHLDLSRNHF 308 (873)
Q Consensus 243 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l----~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l 308 (873)
+.....|..|++++|.+.+.........+ ..+++|++..|.+++ .+.+.+.....++.++++.|.+
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 34445555566666655532222111111 234445555554443 2333344444555555555543
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.78 E-value=0.2 Score=26.86 Aligned_cols=11 Identities=55% Similarity=0.634 Sum_probs=3.5
Q ss_pred CcEEECCCCCC
Q 045210 172 LQFLDLRPNYL 182 (873)
Q Consensus 172 L~~L~L~~n~l 182 (873)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.34 E-value=0.45 Score=28.78 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=13.4
Q ss_pred CCCCcEEECCCCCCCCCccCcc
Q 045210 169 LSNLQFLDLRPNYLGGLYVEDF 190 (873)
Q Consensus 169 l~~L~~L~L~~n~l~~l~~~~~ 190 (873)
+++|++|+|++|.+..++...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3456666666666666665533
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.34 E-value=0.45 Score=28.78 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=13.4
Q ss_pred CCCCcEEECCCCCCCCCccCcc
Q 045210 169 LSNLQFLDLRPNYLGGLYVEDF 190 (873)
Q Consensus 169 l~~L~~L~L~~n~l~~l~~~~~ 190 (873)
+++|++|+|++|.+..++...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3456666666666666665533
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.14 E-value=0.14 Score=48.51 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=18.6
Q ss_pred CCEEEccCCCCCCCCccccCCCCCccEEEcCCCC
Q 045210 225 LETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ 258 (873)
Q Consensus 225 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 258 (873)
++.++.+++.|..+.-..+.+++.++.|.+.+|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 4455555555555544555555556666665553
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.98 E-value=0.073 Score=51.18 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=44.8
Q ss_pred ceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210 796 LKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ 855 (873)
Q Consensus 796 L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 855 (873)
+..||+|.|++. ..|+.++++..+..+++.+|..+ ..|.+++..+.++.+|+-.|++.
T Consensus 67 ~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 67 LVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 366788888776 67888888877888887777777 67788888888888888887764
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.44 E-value=0.77 Score=27.73 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=12.6
Q ss_pred CCCcEEEccCCeecccCChhHH
Q 045210 688 TELRLFDISENEFVGNIPTWIG 709 (873)
Q Consensus 688 ~~L~~L~Ls~n~l~~~ip~~~~ 709 (873)
++|+.|++++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5565543
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.44 E-value=0.77 Score=27.73 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=12.6
Q ss_pred CCCcEEEccCCeecccCChhHH
Q 045210 688 TELRLFDISENEFVGNIPTWIG 709 (873)
Q Consensus 688 ~~L~~L~Ls~n~l~~~ip~~~~ 709 (873)
++|+.|++++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5565543
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.49 E-value=0.44 Score=28.19 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=12.2
Q ss_pred CCCCEEeCCCCccccccChhh
Q 045210 737 ASLKILDLSSNNLTGVIPRCI 757 (873)
Q Consensus 737 ~~L~~L~Ls~N~l~~~ip~~l 757 (873)
++|+.|+|++|++++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 567777888877775544433
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.69 E-value=0.66 Score=27.41 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=6.6
Q ss_pred CCCcEEEccCCeecc
Q 045210 688 TELRLFDISENEFVG 702 (873)
Q Consensus 688 ~~L~~L~Ls~n~l~~ 702 (873)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.29 E-value=0.025 Score=54.24 Aligned_cols=59 Identities=20% Similarity=0.134 Sum_probs=28.9
Q ss_pred CCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcC
Q 045210 296 TSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356 (873)
Q Consensus 296 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 356 (873)
+.+..|+++.|.+. ..|..++....++.+++..|..+ ..|.+++..+.++++++..+.+
T Consensus 65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 33444444444443 34444444444555555554444 4455555555555555555543
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.99 E-value=0.53 Score=44.69 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 045210 345 SIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380 (873)
Q Consensus 345 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 380 (873)
.++.++-+++.|..+.-+.+.+++.++.|.+.+|.-
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~ 137 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY 137 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccc
Confidence 456667777766655556666666666666666643
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.84 E-value=22 Score=38.70 Aligned_cols=69 Identities=23% Similarity=0.199 Sum_probs=36.3
Q ss_pred CCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhh---cCCCCCEEEccCCcCcchhhHHHH
Q 045210 319 FIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFK---RLRHLRSVNLSGNKLSQEISQVLD 389 (873)
Q Consensus 319 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~ 389 (873)
-+.+++++++.|.+....|-.+..-. --+.++.|+.+...-..+. .-..+.+++++.|.....++....
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n 235 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLN 235 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHH
Confidence 45678888888888776665543211 1155666665432111111 112355666666666555555443
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.07 E-value=2.8 Score=25.32 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=6.3
Q ss_pred ceEEECCCCccc
Q 045210 796 LKVLDLSANYFS 807 (873)
Q Consensus 796 L~~L~ls~n~l~ 807 (873)
|+.|++|+|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 445555555554
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.09 E-value=5.8 Score=24.07 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=8.3
Q ss_pred CCCcEEECCCCCCCC
Q 045210 170 SNLQFLDLRPNYLGG 184 (873)
Q Consensus 170 ~~L~~L~L~~n~l~~ 184 (873)
++|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455666666665543
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.87 E-value=25 Score=38.30 Aligned_cols=15 Identities=27% Similarity=0.151 Sum_probs=9.7
Q ss_pred CCCCeecCCCCCCCC
Q 045210 121 KHLIHLDLSYNDFQG 135 (873)
Q Consensus 121 ~~L~~L~Ls~n~~~~ 135 (873)
+.++++|++.|.+..
T Consensus 165 pr~r~~dls~npi~d 179 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGD 179 (553)
T ss_pred chhhhhccCCCcccc
Confidence 346777777776544
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=44.59 E-value=18 Score=22.32 Aligned_cols=14 Identities=57% Similarity=0.636 Sum_probs=7.2
Q ss_pred CCcEEEccCccCcC
Q 045210 589 SLTTLDLSSNFLSG 602 (873)
Q Consensus 589 ~L~~L~l~~n~l~~ 602 (873)
+|++|++++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45555555555543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.60 E-value=12 Score=41.39 Aligned_cols=64 Identities=23% Similarity=0.203 Sum_probs=27.9
Q ss_pred CCCCCEEEccCCCCCCCCc--cccCCCCCccEEEcCCC--CCCCCchhHhhcCCCCCcEEEccCCcCCC
Q 045210 222 LHSLETLRFSGCLLHHISP--LSFANFSSLVTLDISDN--QFADSSIVNQVLGLVNLVFLDLSTNNFQG 286 (873)
Q Consensus 222 l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (873)
.+.+..+.+++|++..+.. ..-...++|+.|+|++| .+....-...++ ...|++|.+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCcccc
Confidence 3444455555555433321 11123355666666666 222111111111 2346666666666553
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.65 E-value=30 Score=38.54 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=16.2
Q ss_pred CCCccEEEcCCCCCCCCchhH-hhcCCCCCcEEEccCC
Q 045210 246 FSSLVTLDISDNQFADSSIVN-QVLGLVNLVFLDLSTN 282 (873)
Q Consensus 246 l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n 282 (873)
.+.+..+.|++|++..-.... .....++|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345555556666553211111 1122345555555554
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.79 E-value=42 Score=20.07 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=8.5
Q ss_pred CCCCcEEEccCCe
Q 045210 687 CTELRLFDISENE 699 (873)
Q Consensus 687 l~~L~~L~Ls~n~ 699 (873)
|++|+.|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4566777777764
Done!