Query 045210
Match_columns 873
No_of_seqs 841 out of 5200
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 19:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.8E-85 6.1E-90 787.7 52.3 692 31-868 5-732 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.7E-72 9.4E-77 673.4 42.1 627 121-873 50-711 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-57 3.7E-62 542.8 48.7 545 124-750 7-573 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-56 1.5E-60 529.0 50.9 576 198-859 26-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.6E-52 5.6E-57 491.5 44.5 457 239-835 97-564 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 8.3E-52 2.8E-56 485.5 41.6 536 199-859 13-562 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.6E-51 8.7E-56 481.4 44.4 518 224-859 34-564 (606)
8 4eco_A Uncharacterized protein 100.0 3.7E-53 1.3E-57 495.7 20.4 81 34-133 26-117 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 6.8E-51 2.3E-55 477.8 35.7 539 171-835 12-562 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 5.6E-50 1.9E-54 474.7 29.2 359 32-463 263-714 (876)
11 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-48 1.1E-52 469.6 38.6 534 125-754 8-564 (844)
12 3j0a_A TOLL-like receptor 5; m 100.0 6.3E-48 2.2E-52 467.1 34.6 531 201-857 8-562 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 5.9E-47 2E-51 441.3 39.0 187 615-859 346-535 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 5.2E-45 1.8E-49 424.9 33.3 490 223-873 28-525 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 6.3E-45 2.2E-49 421.9 32.3 481 275-859 8-514 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 4.6E-44 1.6E-48 414.6 35.1 490 123-705 7-514 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 9.4E-45 3.2E-49 417.1 23.9 456 275-859 3-485 (520)
18 4eco_A Uncharacterized protein 100.0 1.1E-44 3.8E-49 423.9 20.8 357 406-855 192-600 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 4.4E-42 1.5E-46 406.1 39.8 540 200-857 34-582 (635)
20 4g8a_A TOLL-like receptor 4; l 100.0 4E-42 1.4E-46 406.4 38.3 517 121-753 52-583 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 1E-42 3.5E-47 400.1 30.0 455 201-754 4-485 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 8.1E-43 2.8E-47 413.5 29.0 393 306-855 435-864 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-41 1E-45 391.0 23.7 462 272-860 31-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.9E-41 2.7E-45 387.5 24.1 468 249-835 33-514 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 1E-39 3.5E-44 347.4 14.0 277 34-362 2-286 (313)
26 1jl5_A Outer protein YOPM; leu 100.0 2.3E-38 8E-43 353.7 24.9 155 295-481 10-164 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 4E-38 1.4E-42 351.9 21.7 425 246-841 10-439 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 4.8E-37 1.6E-41 346.9 28.5 376 272-755 30-413 (455)
29 3v47_A TOLL-like receptor 5B a 100.0 1.3E-36 4.5E-41 343.2 31.5 371 421-859 30-412 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-35 1E-39 329.0 30.8 90 616-721 318-407 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 7.8E-35 2.7E-39 325.5 30.7 273 110-438 31-303 (457)
32 1o6v_A Internalin A; bacterial 100.0 1.9E-33 6.7E-38 317.3 29.8 341 399-832 48-389 (466)
33 1o6v_A Internalin A; bacterial 100.0 2.8E-32 9.5E-37 307.8 35.5 344 81-484 46-389 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 1.4E-32 4.7E-37 312.0 25.1 306 121-462 32-337 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 9.8E-32 3.4E-36 305.0 28.9 321 124-484 14-334 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 4.5E-32 1.5E-36 299.0 23.6 316 118-463 42-357 (390)
37 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-32 6.5E-37 291.3 19.2 249 567-856 50-306 (313)
38 4fmz_A Internalin; leucine ric 100.0 1.6E-30 5.4E-35 282.1 31.8 306 117-457 40-345 (347)
39 3oja_B Anopheles plasmodium-re 100.0 3.5E-31 1.2E-35 308.0 23.7 314 119-462 49-362 (597)
40 4fcg_A Uncharacterized protein 100.0 6.7E-32 2.3E-36 288.8 14.5 280 33-380 22-313 (328)
41 4fmz_A Internalin; leucine ric 100.0 2.6E-29 8.9E-34 272.5 33.1 308 141-483 39-346 (347)
42 1z7x_W Ribonuclease inhibitor; 100.0 3.2E-33 1.1E-37 316.1 2.3 386 421-861 3-446 (461)
43 3o6n_A APL1; leucine-rich repe 100.0 8.6E-30 2.9E-34 280.8 26.9 311 343-752 44-354 (390)
44 3oja_B Anopheles plasmodium-re 100.0 1.1E-29 3.8E-34 295.4 27.5 127 618-752 234-360 (597)
45 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-32 7.7E-37 309.2 3.8 111 247-357 3-126 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-28 6.1E-33 263.7 25.0 283 520-873 34-327 (332)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-28 6.4E-33 263.6 23.8 295 121-455 33-330 (332)
48 1xku_A Decorin; proteoglycan, 100.0 7.5E-28 2.6E-32 258.7 28.3 245 122-382 32-277 (330)
49 1xku_A Decorin; proteoglycan, 100.0 1.5E-27 5E-32 256.5 27.7 284 520-873 32-326 (330)
50 3ogk_B Coronatine-insensitive 100.0 1.3E-30 4.6E-35 304.6 2.5 429 114-576 66-547 (592)
51 4fcg_A Uncharacterized protein 100.0 1.4E-28 4.6E-33 263.1 16.7 225 588-855 81-314 (328)
52 3ogk_B Coronatine-insensitive 99.9 6.2E-29 2.1E-33 290.5 7.9 404 270-722 110-547 (592)
53 2z66_A Variable lymphocyte rec 99.9 6.7E-27 2.3E-31 248.5 22.2 246 572-856 12-262 (306)
54 2z80_A TOLL-like receptor 2, v 99.9 5.3E-27 1.8E-31 254.6 17.2 267 112-386 45-319 (353)
55 3zyi_A Leucine-rich repeat-con 99.9 3.6E-26 1.2E-30 256.7 23.5 249 569-856 56-304 (452)
56 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-26 4.8E-31 243.2 17.8 256 570-864 14-270 (285)
57 2z66_A Variable lymphocyte rec 99.9 1.7E-26 5.9E-31 245.3 17.8 283 522-868 10-300 (306)
58 3zyj_A Leucine-rich repeat-con 99.9 7.3E-26 2.5E-30 253.3 22.7 249 569-856 45-293 (440)
59 2z80_A TOLL-like receptor 2, v 99.9 1.7E-26 5.7E-31 250.6 15.9 278 544-859 31-318 (353)
60 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-25 1.5E-29 231.7 22.6 237 146-418 32-269 (285)
61 1wwl_A Monocyte differentiatio 99.9 8.5E-28 2.9E-32 255.6 0.5 249 567-856 43-310 (312)
62 3g06_A SSPH2 (leucine-rich rep 99.9 6.9E-25 2.4E-29 251.9 23.9 269 520-867 41-309 (622)
63 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-26 3.9E-31 247.5 7.0 268 521-861 12-282 (317)
64 3zyi_A Leucine-rich repeat-con 99.9 8.1E-25 2.8E-29 245.7 21.7 242 589-873 55-297 (452)
65 3zyj_A Leucine-rich repeat-con 99.9 1.1E-24 3.8E-29 243.7 21.7 242 589-873 44-286 (440)
66 1wwl_A Monocyte differentiatio 99.9 1.2E-26 4.1E-31 246.7 4.7 238 112-382 56-310 (312)
67 2p1m_B Transport inhibitor res 99.9 1.9E-26 6.4E-31 269.6 6.0 435 241-723 60-541 (594)
68 3g06_A SSPH2 (leucine-rich rep 99.9 4.2E-24 1.4E-28 245.3 23.7 248 519-842 61-308 (622)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-25 4.2E-30 239.5 8.7 248 501-764 16-265 (317)
70 3oja_A Leucine-rich immune mol 99.9 2E-25 6.7E-30 251.8 10.1 206 615-868 57-264 (487)
71 2p1m_B Transport inhibitor res 99.9 9.1E-27 3.1E-31 272.3 -1.5 430 250-751 46-520 (594)
72 2o6q_A Variable lymphocyte rec 99.9 6.6E-23 2.3E-27 213.0 23.5 181 146-356 37-217 (270)
73 2z62_A TOLL-like receptor 4, v 99.9 1.7E-23 5.9E-28 218.4 18.9 211 617-859 29-241 (276)
74 3oja_A Leucine-rich immune mol 99.9 3.6E-24 1.2E-28 241.5 13.5 222 604-873 22-244 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 5.3E-23 1.8E-27 214.7 18.8 224 573-835 13-241 (276)
76 3rfs_A Internalin B, repeat mo 99.9 2E-23 6.9E-28 217.0 14.8 208 615-867 40-247 (272)
77 2o6q_A Variable lymphocyte rec 99.9 2.9E-22 9.8E-27 208.2 21.0 203 618-857 18-220 (270)
78 2ca6_A RAN GTPase-activating p 99.9 7E-24 2.4E-28 233.0 5.9 238 588-859 32-320 (386)
79 1p9a_G Platelet glycoprotein I 99.9 4.2E-22 1.4E-26 208.5 19.1 203 613-856 7-209 (290)
80 4glp_A Monocyte differentiatio 99.9 1.9E-23 6.6E-28 221.8 8.6 232 589-856 65-308 (310)
81 3rfs_A Internalin B, repeat mo 99.9 3.5E-22 1.2E-26 207.6 16.5 189 612-843 59-247 (272)
82 3goz_A Leucine-rich repeat-con 99.9 1.5E-23 5E-28 227.9 4.5 183 548-751 2-210 (362)
83 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4.1E-28 231.1 1.0 242 599-873 15-310 (386)
84 2ast_B S-phase kinase-associat 99.9 9.2E-23 3.2E-27 219.8 7.8 270 65-418 33-314 (336)
85 3goz_A Leucine-rich repeat-con 99.9 1.6E-22 5.5E-27 219.7 8.1 165 592-760 2-190 (362)
86 2ast_B S-phase kinase-associat 99.9 6.5E-23 2.2E-27 221.0 3.6 188 545-761 48-247 (336)
87 1p9a_G Platelet glycoprotein I 99.9 1.5E-20 5.1E-25 196.7 21.4 204 116-357 5-208 (290)
88 3m19_A Variable lymphocyte rec 99.9 1.2E-20 4.3E-25 193.4 18.5 181 616-833 14-194 (251)
89 4glp_A Monocyte differentiatio 99.8 2.8E-21 9.7E-26 205.1 12.6 202 590-832 93-308 (310)
90 2xwt_C Thyrotropin receptor; s 99.8 6.1E-21 2.1E-25 194.3 14.4 198 616-853 31-237 (239)
91 2xwt_C Thyrotropin receptor; s 99.8 3.1E-21 1.1E-25 196.5 10.4 199 631-872 25-232 (239)
92 1h6u_A Internalin H; cell adhe 99.8 1.4E-20 4.7E-25 199.2 15.6 147 587-750 40-186 (308)
93 3m19_A Variable lymphocyte rec 99.8 5.3E-20 1.8E-24 188.7 17.8 166 589-762 15-180 (251)
94 1h6u_A Internalin H; cell adhe 99.8 8.8E-20 3E-24 192.9 19.1 195 117-358 37-231 (308)
95 3cvr_A Invasion plasmid antige 99.8 1.7E-20 5.8E-25 212.6 14.2 195 589-842 60-254 (571)
96 2o6s_A Variable lymphocyte rec 99.8 9.5E-20 3.3E-24 181.1 14.1 195 619-861 10-204 (208)
97 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 179.8 13.3 181 643-867 10-190 (208)
98 4ay9_X Follicle-stimulating ho 99.8 2.1E-19 7E-24 194.1 14.1 242 570-853 12-257 (350)
99 3cvr_A Invasion plasmid antige 99.8 3.2E-19 1.1E-23 202.2 13.6 215 56-342 32-252 (571)
100 4ay9_X Follicle-stimulating ho 99.8 8.8E-19 3E-23 189.1 16.5 237 591-873 12-253 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 3.3E-18 1.1E-22 171.0 15.2 115 643-761 14-129 (220)
102 1dce_A Protein (RAB geranylger 99.8 4.3E-21 1.5E-25 219.0 -6.8 204 613-873 346-567 (567)
103 1h6t_A Internalin B; cell adhe 99.8 2.4E-18 8.2E-23 180.2 12.6 171 638-856 44-214 (291)
104 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4.2E-22 191.5 17.4 203 615-865 42-257 (605)
105 1m9s_A Internalin B; cell inva 99.7 2.6E-18 8.9E-23 197.2 11.2 193 616-858 21-213 (605)
106 2v9t_B SLIT homolog 2 protein 99.7 4.3E-17 1.5E-21 162.9 14.8 153 643-832 14-166 (220)
107 3e6j_A Variable lymphocyte rec 99.7 7.7E-17 2.6E-21 162.2 15.7 156 641-834 20-175 (229)
108 4b8c_D Glucose-repressible alc 99.7 3.1E-18 1.1E-22 201.9 5.8 194 621-858 206-407 (727)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 6.2E-17 2.1E-21 161.7 14.1 137 617-754 33-170 (220)
110 2xot_A Amphoterin-induced prot 99.7 3.3E-17 1.1E-21 177.5 13.0 181 619-833 21-204 (361)
111 1h6t_A Internalin B; cell adhe 99.7 1.8E-16 6E-21 165.9 17.9 150 220-382 65-214 (291)
112 4ezg_A Putative uncharacterize 99.7 4.3E-17 1.5E-21 160.1 12.2 154 662-856 42-195 (197)
113 2v9t_B SLIT homolog 2 protein 99.7 8.7E-17 3E-21 160.7 14.6 153 619-808 14-166 (220)
114 2xot_A Amphoterin-induced prot 99.7 3.4E-17 1.2E-21 177.3 11.4 179 570-752 21-204 (361)
115 3e6j_A Variable lymphocyte rec 99.7 2.3E-16 7.9E-21 158.8 16.1 137 616-754 40-176 (229)
116 1dce_A Protein (RAB geranylger 99.7 5.9E-19 2E-23 201.3 -4.1 201 588-849 349-567 (567)
117 1xeu_A Internalin C; cellular 99.7 4.9E-17 1.7E-21 167.3 9.3 170 615-833 18-187 (263)
118 4ezg_A Putative uncharacterize 99.7 9.9E-17 3.4E-21 157.5 10.8 155 637-832 41-195 (197)
119 1xeu_A Internalin C; cellular 99.7 4.5E-17 1.5E-21 167.6 7.4 146 589-752 20-165 (263)
120 4b8c_D Glucose-repressible alc 99.7 2.1E-17 7E-22 194.9 3.9 162 646-852 207-369 (727)
121 1w8a_A SLIT protein; signaling 99.7 3.7E-16 1.3E-20 152.5 11.8 162 667-865 11-172 (192)
122 1w8a_A SLIT protein; signaling 99.6 4E-16 1.4E-20 152.2 8.0 173 643-856 11-184 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 2.5E-15 8.6E-20 143.3 10.7 137 688-861 24-165 (168)
124 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.1E-20 140.3 8.7 126 713-873 17-147 (149)
125 2ell_A Acidic leucine-rich nuc 99.6 4.6E-15 1.6E-19 141.5 9.2 136 615-755 23-164 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 3.3E-15 1.1E-19 139.3 8.0 128 688-851 17-149 (149)
127 2o6r_A Variable lymphocyte rec 99.6 1.6E-14 5.6E-19 139.0 12.8 133 690-859 9-141 (177)
128 2wfh_A SLIT homolog 2 protein 99.6 1.5E-14 5.2E-19 140.9 12.0 127 667-831 13-139 (193)
129 3sb4_A Hypothetical leucine ri 99.5 6.7E-15 2.3E-19 157.2 7.9 238 120-374 48-327 (329)
130 3sb4_A Hypothetical leucine ri 99.5 2.2E-14 7.5E-19 153.2 11.1 218 615-872 100-327 (329)
131 1ds9_A Outer arm dynein; leuci 99.5 5.9E-16 2E-20 152.1 -3.8 155 660-855 14-185 (198)
132 2o6r_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 132.3 12.6 133 618-754 9-141 (177)
133 1ds9_A Outer arm dynein; leuci 99.5 8.7E-16 3E-20 150.9 -3.9 156 636-832 14-186 (198)
134 2wfh_A SLIT homolog 2 protein 99.5 5.1E-13 1.7E-17 130.0 15.0 128 570-702 13-140 (193)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-13 4.9E-18 132.1 10.3 134 684-856 15-154 (176)
136 4fdw_A Leucine rich hypothetic 99.4 5.1E-12 1.7E-16 137.6 18.9 240 147-408 136-381 (401)
137 1a9n_A U2A', U2A'; complex (nu 99.4 3.8E-13 1.3E-17 129.1 8.5 132 612-750 15-153 (176)
138 4fdw_A Leucine rich hypothetic 99.4 8E-12 2.7E-16 136.0 18.6 219 224-482 158-382 (401)
139 3g39_A Variable lymphocyte rec 99.4 2.2E-12 7.5E-17 122.7 11.4 67 690-760 11-77 (170)
140 4fs7_A Uncharacterized protein 99.4 1.4E-11 4.8E-16 135.0 19.2 221 415-698 156-376 (394)
141 2r9u_A Variable lymphocyte rec 99.3 6.2E-12 2.1E-16 119.9 11.3 104 691-831 15-118 (174)
142 3g39_A Variable lymphocyte rec 99.3 7.5E-12 2.6E-16 119.0 11.1 109 642-754 11-119 (170)
143 4fs7_A Uncharacterized protein 99.3 5.8E-11 2E-15 130.0 18.6 313 114-480 64-376 (394)
144 3un9_A NLR family member X1; l 99.3 2.1E-13 7.3E-18 147.0 -1.3 188 639-856 71-284 (372)
145 3un9_A NLR family member X1; l 99.3 7.1E-13 2.4E-17 142.9 2.6 165 223-387 72-258 (372)
146 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5.3E-16 117.2 11.6 106 643-752 15-120 (174)
147 2ifg_A High affinity nerve gro 99.1 2.6E-10 9E-15 122.6 9.8 105 692-833 12-118 (347)
148 4gt6_A Cell surface protein; l 99.0 1.2E-08 4.2E-13 111.4 21.3 131 414-577 258-388 (394)
149 4gt6_A Cell surface protein; l 99.0 1.4E-08 4.7E-13 111.0 19.8 299 225-577 66-367 (394)
150 2ifg_A High affinity nerve gro 98.9 1.8E-09 6.2E-14 116.0 10.2 104 619-726 11-116 (347)
151 2ra8_A Uncharacterized protein 98.8 1.9E-09 6.4E-14 115.0 6.1 161 658-853 166-341 (362)
152 2ra8_A Uncharacterized protein 98.7 1.6E-08 5.4E-13 107.8 8.7 61 289-352 165-227 (362)
153 4h09_A Hypothetical leucine ri 98.6 2.8E-06 9.6E-11 92.2 21.1 208 141-376 64-271 (379)
154 4h09_A Hypothetical leucine ri 98.6 3.1E-06 1.1E-10 91.8 21.0 108 635-746 212-319 (379)
155 1io0_A Tropomodulin; LRR prote 98.4 9.9E-08 3.4E-12 91.6 3.3 113 589-701 37-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 1.6E-07 5.5E-12 94.6 4.9 78 793-872 169-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 4.5E-07 1.5E-11 87.0 6.2 116 267-382 31-165 (185)
158 3rw6_A Nuclear RNA export fact 98.2 4.2E-07 1.4E-11 91.5 3.4 67 637-705 167-237 (267)
159 3e4g_A ATP synthase subunit S, 97.7 2.4E-05 8.3E-10 72.7 5.2 83 297-379 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 1.9E-05 6.4E-10 73.4 3.1 82 224-306 62-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00015 5E-09 68.8 3.8 112 589-700 42-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.0012 4.3E-08 62.4 7.8 111 270-380 39-169 (197)
163 3rfe_A Platelet glycoprotein I 96.2 0.0052 1.8E-07 54.3 5.6 56 798-855 12-68 (130)
164 3rfe_A Platelet glycoprotein I 95.8 0.0086 2.9E-07 52.8 4.7 57 692-751 12-69 (130)
165 2lz0_A Uncharacterized protein 29.1 1.1E+02 0.0036 24.8 5.9 40 633-673 13-52 (100)
166 2lz0_A Uncharacterized protein 25.8 64 0.0022 26.1 3.9 39 439-479 14-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-85 Score=787.70 Aligned_cols=692 Identities=32% Similarity=0.433 Sum_probs=521.6
Q ss_pred ccccCCHHHHHHHHHhhhcCCCCCCCcCCCccCCCCCCccceeeEecCCCCcEEEEecCCCCCCCCCchhhhhcccccee
Q 045210 31 AAAGCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIV 110 (873)
Q Consensus 31 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~ 110 (873)
+++.+.++|++||++||+++.||. .+++|+ . +++||.|.||+|+ .|||++++|++. .+.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~-~-~~~~C~w~gv~C~--~~~v~~L~L~~~----------------~l~ 63 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWS-S-NKNPCTFDGVTCR--DDKVTSIDLSSK----------------PLN 63 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCC-T-TSCGGGSTTEEEE--TTEEEEEECTTS----------------CCC
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCC-C-CCCCcCCcceEEC--CCcEEEEECCCC----------------CcC
Confidence 344456899999999999999998 899998 4 6899999999998 699999999985 778
Q ss_pred ee---cccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcc--cccCCCCCcEEECCCCCCCCC
Q 045210 111 GK---INPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPH--QIGNLSNLQFLDLRPNYLGGL 185 (873)
Q Consensus 111 g~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~l 185 (873)
|. +++++.++++|+.++++.+.+.. +|..++.+++|++|+|++|.+++.+|. .++++++|++|++++|.+...
T Consensus 64 g~~~~l~~~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 141 (768)
T 3rgz_A 64 VGFSAVSSSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141 (768)
T ss_dssp EEHHHHHHHTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC
T ss_pred CccCccChhHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc
Confidence 88 89999999999999999998753 678899999999999999999999998 999999999999999988644
Q ss_pred ccCccccccCCCCCcEEeCCCCCCCCCCCcc-ccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCch
Q 045210 186 YVEDFGWVSHLSLLKHLDLSGVDLSKTSDGP-LITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSI 264 (873)
Q Consensus 186 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 264 (873)
.+..+ +.++++|++|++++|.+++..... ..+.++++|++|++++|.+.+..+. .++++|++|++++|.+. +.+
T Consensus 142 ~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~-~~~ 216 (768)
T 3rgz_A 142 GKVSG--GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFS-TGI 216 (768)
T ss_dssp SSCCS--CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCC-SCC
T ss_pred CCHHH--hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCC-CCC
Confidence 33321 468899999999999887664221 1267889999999999998877654 78899999999999887 555
Q ss_pred hHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCC-
Q 045210 265 VNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNL- 343 (873)
Q Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l- 343 (873)
+. ++.+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+...
T Consensus 217 ~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~ 293 (768)
T 3rgz_A 217 PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC 293 (768)
T ss_dssp CB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTC
T ss_pred cc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhc
Confidence 55 888899999999999998888888999999999999999888777765 78889999999999988888888765
Q ss_pred CCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHH-HHHhhhcccccccEEEccCcccCCccccccCCCC-
Q 045210 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQV-LDMFSACASNVLESLDLSNNTLFGLLTNQIGNFK- 421 (873)
Q Consensus 344 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~- 421 (873)
++|++|++++|.+++.+|..++.+++|++|++++|.+++.++.. +... +.|++|++++|.+++.+|..+..++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM-----RGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC-----TTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC-----CCCCEEeCcCCccCccccHHHHhhhc
Confidence 88999999999988888888888888777777777766544332 2211 1255555555555555555555554
Q ss_pred CCCEEeCCCCccCccccccccC--CCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccE
Q 045210 422 NLDSLDLSFNNISGHIPLSLGQ--LSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQA 499 (873)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 499 (873)
+|++|++++|++++.+|..+.. +++|++|++++|.+++.+|
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p------------------------------------- 411 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP------------------------------------- 411 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC-------------------------------------
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC-------------------------------------
Confidence 5555555555555555555444 4555555555555554443
Q ss_pred EeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCC
Q 045210 500 IGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNS 578 (873)
Q Consensus 500 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~ 578 (873)
.++..+++|++|++++|++.+.+|..+ ..+++|++|++++|.+.+.+| .+..+++|++|++++|+
T Consensus 412 -------------~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 412 -------------PTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp -------------GGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred -------------HHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 444445555555555555555444433 334556666666666655555 45555555555555554
Q ss_pred CCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcc
Q 045210 579 LSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPT 658 (873)
Q Consensus 579 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 658 (873)
+.+.+ |.. +.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|.
T Consensus 478 l~~~~---------------------p~~----l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 478 LTGEI---------------------PSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCSCC---------------------CGG----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred ccCcC---------------------CHH----HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 44433 333 22356666666666666666666666666666666666666666666
Q ss_pred cccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCC----------------------eecccCChhHHhhcccCc
Q 045210 659 SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN----------------------EFVGNIPTWIGERLSGII 716 (873)
Q Consensus 659 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n----------------------~l~~~ip~~~~~~l~~L~ 716 (873)
.++++++|+.|++++|+++|.+|..+..+..+..+++..+ .+.|..|..+.. ++.++
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ 611 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRN 611 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG-GGGTC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc-ccccc
Confidence 6666666666666666666666666655554444333321 244556666664 88888
Q ss_pred EEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccc
Q 045210 717 LLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYL 796 (873)
Q Consensus 717 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 796 (873)
.+++..|.+.|.+|..+..+++|+.||+++|+++|.+|.++++++.|
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L--------------------------------- 658 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL--------------------------------- 658 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC---------------------------------
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC---------------------------------
Confidence 89999999999999999999999999999999999999999988876
Q ss_pred eEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccccc--cccCCCC
Q 045210 797 KVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKN--MVNLEFL 868 (873)
Q Consensus 797 ~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~--l~~l~~L 868 (873)
+.|||++|+++|.||.+++++++|++||||+|+++|.||..++.+++|++||+|+|+++|.||+. +.+++..
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~ 732 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGG
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999975 4444433
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-72 Score=673.43 Aligned_cols=627 Identities=32% Similarity=0.432 Sum_probs=436.7
Q ss_pred CCCCeecCCCCCCCCC--CCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCC
Q 045210 121 KHLIHLDLSYNDFQGI--QIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSL 198 (873)
Q Consensus 121 ~~L~~L~Ls~n~~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~ 198 (873)
.+++.|+|+++.+.+. .+|+.++++++|++++++.+.+.. +|..++++++|++|+|++|.+....+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~---------- 118 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTT---------- 118 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGG----------
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCC----------
Confidence 4677888888877652 156677777777777777776532 456677777777777777765421111
Q ss_pred CcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCcccc-CCCCCccEEEcCCCCCCCCchhHh---hcCCCCC
Q 045210 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSF-ANFSSLVTLDISDNQFADSSIVNQ---VLGLVNL 274 (873)
Q Consensus 199 L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L 274 (873)
...++.+++|++|++++|.+.+..|..+ .++++|++|++++|.++ +..+.. +.++++|
T Consensus 119 -----------------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~l~~L 180 (768)
T 3rgz_A 119 -----------------LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS-GANVVGWVLSDGCGEL 180 (768)
T ss_dssp -----------------GGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE-EETHHHHHHTTCCTTC
T ss_pred -----------------hHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC-CcCChhhhhhccCCCC
Confidence 0123334444444444444444434333 45555555555555554 333333 4455555
Q ss_pred cEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCC
Q 045210 275 VFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354 (873)
Q Consensus 275 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 354 (873)
++|++++|.+++..+. ..+++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|
T Consensus 181 ~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 181 KHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp CEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred CEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence 5555555555443332 4444555555555544444443 444444444444444444444444444444444444444
Q ss_pred cCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCC-CCCCEEeCCCCcc
Q 045210 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNF-KNLDSLDLSFNNI 433 (873)
Q Consensus 355 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l 433 (873)
.+++.+|.. .++ +|++|++++|.+++.+|..+... ++|++|++++|++
T Consensus 258 ~l~~~~~~~--~l~-----------------------------~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 258 QFVGPIPPL--PLK-----------------------------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp CCEESCCCC--CCT-----------------------------TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred cccCccCcc--ccC-----------------------------CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence 444333321 222 26667777777666666666554 7788888888887
Q ss_pred CccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcch
Q 045210 434 SGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQ 513 (873)
Q Consensus 434 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 513 (873)
++.+|..++++++|++|++++|.++|.+|...+..+++|+.+++++|.+.+ .+|.
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~-------------------------~~p~ 361 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG-------------------------ELPE 361 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE-------------------------CCCT
T ss_pred CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc-------------------------cccH
Confidence 777777777888888888888887777777667777777777777776543 2455
Q ss_pred hhhcCC-cccEEEccCCCCCcccChhHHhc-CCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCC---C
Q 045210 514 WLLSQN-HLIYLDLSNSSISDTIPDRLVKS-LSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLI---P 587 (873)
Q Consensus 514 ~l~~~~-~L~~L~l~~n~l~~~~p~~~~~~-l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~---~ 587 (873)
++..++ +|+.|++++|.+.+.+|..+... +++|++|++++|.+++.+| .+..+++|++|++++|.+.+.+|.. +
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 441 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC
Confidence 555555 67777777777776666655432 5677888888888877766 6777777888888877777766653 4
Q ss_pred CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCcc
Q 045210 588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQ 667 (873)
Q Consensus 588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 667 (873)
++|++|++++|.+++.+|..+. .+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|+
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELM----YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGG----GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCCCEEECCCCcccCcCCHHHc----CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 6777888888888777776644 378889999999998888888888889999999999998888888888888999
Q ss_pred EEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCC----------------------ee
Q 045210 668 ILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRAN----------------------QF 725 (873)
Q Consensus 668 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n----------------------~l 725 (873)
+|++++|++++.+|..++.+++|++|++++|+++|.+|.+++. ...+..+.+..+ .+
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc-ccchhhhhcccccccccccccccccccccccccccc
Confidence 9999999998888888888899999999999998888888875 444443333221 13
Q ss_pred eeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCc
Q 045210 726 HGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANY 805 (873)
Q Consensus 726 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 805 (873)
.+..+..+..++.+..++++.|.+.|.+|..++.++.| +.||+|+|+
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L---------------------------------~~LdLs~N~ 643 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM---------------------------------MFLDMSYNM 643 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC---------------------------------CEEECCSSC
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccc---------------------------------cEEECcCCc
Confidence 34445556666667777778888888888777666655 899999999
Q ss_pred ccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccccccccCCCCCcccC
Q 045210 806 FSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873 (873)
Q Consensus 806 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~l~l 873 (873)
++|.||.+++++++|+.|+|++|.++|.||..++++++|+.||+|+|+++|.||+.+++|++|++|||
T Consensus 644 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-57 Score=542.83 Aligned_cols=545 Identities=23% Similarity=0.245 Sum_probs=249.7
Q ss_pred CeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEe
Q 045210 124 IHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLD 203 (873)
Q Consensus 124 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~ 203 (873)
+.+|.++++++. +|..+. +++++|++++|.+++..+..|+++++|++|++++|.++.+.+.. +.++++|++|+
T Consensus 7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~ 79 (680)
T 1ziw_A 7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL---CQKLPMLKVLN 79 (680)
T ss_dssp SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH---HHHCTTCCEEE
T ss_pred CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH---HhcccCcCEEE
Confidence 345555655553 454443 56666666666666665556666666666666666655443321 22333333333
Q ss_pred CCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCc
Q 045210 204 LSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNN 283 (873)
Q Consensus 204 L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 283 (873)
+++| .++++++..|+++++|++|++++|.+. +..+..++++++|++|++++|.
T Consensus 80 L~~n--------------------------~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 80 LQHN--------------------------ELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNG 132 (680)
T ss_dssp CCSS--------------------------CCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSC
T ss_pred CCCC--------------------------ccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCc
Confidence 3333 333333333444444444444444443 2222233344444444444444
Q ss_pred CCCCChhhhcCCCCCCEEECCCCCCCCCCchhhh--cCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcch
Q 045210 284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN--KFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIP 361 (873)
Q Consensus 284 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 361 (873)
+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..++.+++|+.+++.++.+.....
T Consensus 133 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 212 (680)
T 1ziw_A 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212 (680)
T ss_dssp CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence 4444444444444455555544444443333332 23444444444444444444444444444444444444321111
Q ss_pred hhhh---cCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcccc
Q 045210 362 RAFK---RLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP 438 (873)
Q Consensus 362 ~~l~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 438 (873)
..+. ..++|+.|++++|.+.+..+..+.... .+.|++|++++|.+.+..+..++.+++|++|++++|++++..|
T Consensus 213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK---WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp HHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG---GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred HHHHHHhhhccccEEEccCCcccccChhHhhccC---cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence 1110 113333333333333332222211110 0114444444444444444444555555555555555554444
Q ss_pred ccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcC
Q 045210 439 LSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ 518 (873)
Q Consensus 439 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 518 (873)
..+..+++|++|++++|...+.++.. .++. .....+..+
T Consensus 290 ~~~~~l~~L~~L~L~~~~~~~~~~~~---~lp~--------------------------------------i~~~~~~~l 328 (680)
T 1ziw_A 290 HSLHGLFNVRYLNLKRSFTKQSISLA---SLPK--------------------------------------IDDFSFQWL 328 (680)
T ss_dssp TTTTTCTTCCEEECTTCBCCC---------CCE--------------------------------------ECTTTTTTC
T ss_pred hhhcCCCCccEEeccchhhhcccccc---cccc--------------------------------------cChhhcccC
Confidence 44555555555555444332221110 0000 001245566
Q ss_pred CcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccc-cC--Cccc--cCCCCeEeCCCCCCCCCCCCC---CCCC
Q 045210 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQ-IP--DLND--AAQLETLDLSSNSLSGPLPLI---PSSL 590 (873)
Q Consensus 519 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~-~~--~~~~--~~~L~~L~l~~n~l~~~~~~~---~~~L 590 (873)
++|++|++++|.+.+. +...+..+++|++|++++|.+... ++ .+.. .+.|+.|++++|++.+..|.. +++|
T Consensus 329 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp TTCCEEECCSCCBCCC-CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCccCCC-ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 7777777777777653 334455677788888877765432 11 1221 135666666666655544432 3445
Q ss_pred cEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCc--cCCcccccCCCCccE
Q 045210 591 TTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFT--GNLPTSLGTLSSLQI 668 (873)
Q Consensus 591 ~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~ 668 (873)
+.|++++|.+++.+|.. .+.++++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.
T Consensus 408 ~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQ---EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp CEEECCSSCCEEECCSG---GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CEEeCCCCcCccccCcc---cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 55555555554443321 1223455555555555555444555555555555555555544 344455555555555
Q ss_pred EEccCCcccccCCcccccCCCCcEEEccCCeecccCC-------hhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCE
Q 045210 669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIP-------TWIGERLSGIILLSLRANQFHGFFPPELCGLASLKI 741 (873)
Q Consensus 669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip-------~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 741 (873)
|++++|++++..+..+..+++|++|++++|++++..+ ...+.++++|++|++++|+++...+..+..+++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 5555555554444445555555555555555542110 001112444444444444444222223444444444
Q ss_pred EeCCCCccc
Q 045210 742 LDLSSNNLT 750 (873)
Q Consensus 742 L~Ls~N~l~ 750 (873)
||+++|+++
T Consensus 565 L~Ls~N~l~ 573 (680)
T 1ziw_A 565 IDLGLNNLN 573 (680)
T ss_dssp EECCSSCCC
T ss_pred eECCCCCCC
Confidence 444444444
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.3e-56 Score=529.04 Aligned_cols=576 Identities=25% Similarity=0.279 Sum_probs=467.2
Q ss_pred CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEE
Q 045210 198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFL 277 (873)
Q Consensus 198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 277 (873)
++++|++++|.++..+ +..+..+++|++|++++|.++++.|..|+++++|++|++++|.++ ...+..+.++++|++|
T Consensus 26 ~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLP--AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TCSEEECCSSCCCCCC--GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCcEEECCCCCCCCcC--HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence 3444444444444332 224567788888888888888888999999999999999999986 3333468999999999
Q ss_pred EccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCccccc--CCCCCCEEeCCCCc
Q 045210 278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG--NLTSIKSLDLSFNR 355 (873)
Q Consensus 278 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~ 355 (873)
++++|.+++..+..+.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..++ .+++|++|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999999987778899999999999999999988888899999999999999999987777664 56899999999999
Q ss_pred CCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCC--CCEEeCCCCcc
Q 045210 356 LESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKN--LDSLDLSFNNI 433 (873)
Q Consensus 356 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l 433 (873)
+++..|..+..+++|+.+++.++.+............. ...|+.|++++|.+.+..|..+..++. |++|++++|++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~--~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA--NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHT--TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhh--hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 99988999999999999999999887554433221111 134999999999999888888887755 99999999999
Q ss_pred CccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcch
Q 045210 434 SGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQ 513 (873)
Q Consensus 434 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 513 (873)
++..|..++.+++|++|++++|++.+..+. .+..+++|+.+++++|..... ++
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~-------------------------~~- 313 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQS-------------------------IS- 313 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC-----------------------------
T ss_pred CccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhcc-------------------------cc-
Confidence 887788889999999999999988855443 567777777777665432111 00
Q ss_pred hhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCC-CC-C----
Q 045210 514 WLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPL-PL-I---- 586 (873)
Q Consensus 514 ~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~-~~-~---- 586 (873)
+...+ .++...+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.... +. .
T Consensus 314 -~~~lp--------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~ 378 (680)
T 1ziw_A 314 -LASLP--------------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378 (680)
T ss_dssp ----CC--------------EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred -ccccc--------------ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc
Confidence 00000 2233345678899999999999999877 6889999999999999865322 11 1
Q ss_pred -CCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCC-hhhhccccCcEEEcCCCcCccCCcccccCCC
Q 045210 587 -PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP-DCWMNWSFLFFLHLGENDFTGNLPTSLGTLS 664 (873)
Q Consensus 587 -~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 664 (873)
.++|+.|++++|++++..|.. +..+++|+.|++++|.+++.+| ..+.++++|++|++++|++.+..+..+..++
T Consensus 379 ~~~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 454 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKIESDA----FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT
T ss_pred ccCcCceEECCCCCCCeEChhh----hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc
Confidence 258999999999999887765 4458999999999999988666 7899999999999999999988889999999
Q ss_pred CccEEEccCCccc--ccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCC--------cccC
Q 045210 665 SLQILHLRGNRFS--GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFP--------PELC 734 (873)
Q Consensus 665 ~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p--------~~l~ 734 (873)
+|+.|++++|.+. +.+|..+..+++|++|++++|++++ +|...+.++++|++|++++|++++..+ ..+.
T Consensus 455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ 533 (680)
T 1ziw_A 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533 (680)
T ss_dssp TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTT
T ss_pred ccccchhccccccccccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCCCccccchhhccCCcchhhc
Confidence 9999999999987 6789999999999999999999995 554444459999999999999986532 2378
Q ss_pred CCCCCCEEeCCCCccccccCh-hhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChh
Q 045210 735 GLASLKILDLSSNNLTGVIPR-CINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQ 813 (873)
Q Consensus 735 ~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~ 813 (873)
.+++|+.|++++|+++ .+|. .|+.+++| +.||+++|++++..|..
T Consensus 534 ~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L---------------------------------~~L~Ls~N~l~~l~~~~ 579 (680)
T 1ziw_A 534 GLSHLHILNLESNGFD-EIPVEVFKDLFEL---------------------------------KIIDLGLNNLNTLPASV 579 (680)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTC---------------------------------CEEECCSSCCCCCCTTT
T ss_pred CCCCCCEEECCCCCCC-CCCHHHcccccCc---------------------------------ceeECCCCCCCcCCHhH
Confidence 8999999999999999 5554 57776665 89999999999766666
Q ss_pred hhcCCCCCeeeCCCCcCcccCCcccc-CCCCCCeEeccCCccccccc
Q 045210 814 VTNLVGLQTLKLSHNFFSGRIPVNMG-AMKSVEALDFSSNRLQGEIP 859 (873)
Q Consensus 814 l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~iP 859 (873)
+.++++|++|++++|.+++..|..++ .+++|+.+++++|++.+.-+
T Consensus 580 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred hCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 78999999999999999998888777 78999999999999998765
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-52 Score=491.46 Aligned_cols=457 Identities=20% Similarity=0.214 Sum_probs=257.4
Q ss_pred CccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhc
Q 045210 239 SPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNK 318 (873)
Q Consensus 239 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 318 (873)
.|..|+++++|++|++++|.++ ...+..+.++++|++|++++|.+++.....+..+++|++|++++|.+++..|..++.
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred ChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh
Confidence 3344444444444444444443 222333444445555555555544422222333555555555555555545555555
Q ss_pred CCCcC--EEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcc-----hhhHHHHHh
Q 045210 319 FIDLE--YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ-----EISQVLDMF 391 (873)
Q Consensus 319 l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~~ 391 (873)
+++|+ +|++++|.+++..|..+. ..+|++|++++|. .++..+..+.+++...+....+.+ .....+...
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 55555 555555655544444333 2456666666554 234444444444333332221111 111111111
Q ss_pred hhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccc
Q 045210 392 SACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTK 471 (873)
Q Consensus 392 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 471 (873)
.. ..++.|++++|.+.+..+..++.+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..+
T Consensus 252 ~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~--------- 318 (606)
T 3t6q_A 252 CE---MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ--------- 318 (606)
T ss_dssp GG---SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG---------
T ss_pred hc---CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch---------
Confidence 11 12677777777777666666677777777777777766 566666667777777777766653222
Q ss_pred cceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEec
Q 045210 472 LVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNL 551 (873)
Q Consensus 472 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l 551 (873)
..+..+++|++|++++|.+.+.+|...+..+++|++|++
T Consensus 319 -----------------------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 319 -----------------------------------------ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp -----------------------------------------GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred -----------------------------------------hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 122333344444444444433333333333333333333
Q ss_pred cCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCC
Q 045210 552 SYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE 631 (873)
Q Consensus 552 ~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 631 (873)
++|.+.+... .+. .+..+++|++|++++|++.+.
T Consensus 358 ~~n~l~~~~~------------------------------------------~~~----~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 358 SHDDIETSDC------------------------------------------CNL----QLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp CSSCCCEEEE------------------------------------------STT----TTTTCTTCCEEECCSCSCEEE
T ss_pred CCCccccccC------------------------------------------cch----hcccCCCCCEEECCCCcCCcC
Confidence 3333221110 011 133467788888888888877
Q ss_pred CChhhhccccCcEEEcCCCcCccCCccc-ccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeeccc---CChh
Q 045210 632 IPDCWMNWSFLFFLHLGENDFTGNLPTS-LGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN---IPTW 707 (873)
Q Consensus 632 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---ip~~ 707 (873)
.|..+..+++|+.|++++|++.+..|.. +..+++|++|++++|++++..|..+..+++|++|++++|++++. .+..
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh
Confidence 7778888888888888888887665543 77788888888888888877777777888888888888877652 2233
Q ss_pred HHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeeccccee
Q 045210 708 IGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVK 787 (873)
Q Consensus 708 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 787 (873)
+. .+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..+.+++.
T Consensus 472 ~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~------------------------- 525 (606)
T 3t6q_A 472 LQ-TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG------------------------- 525 (606)
T ss_dssp GG-GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS-------------------------
T ss_pred hc-cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc-------------------------
Confidence 43 3667777777777776666666666666777777766666666655554333
Q ss_pred ccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCC
Q 045210 788 YPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIP 835 (873)
Q Consensus 788 ~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 835 (873)
| .||+++|++++.+|..++.+++|+.|++++|++.+..+
T Consensus 526 --------L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 526 --------I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp --------C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred --------c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 3 56666666666666666666666666666666665444
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.3e-52 Score=485.52 Aligned_cols=536 Identities=21% Similarity=0.200 Sum_probs=339.4
Q ss_pred CcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEE
Q 045210 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLD 278 (873)
Q Consensus 199 L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 278 (873)
-++++.+++.++.+|.. -.+++++|++++|.++++.+..|.++++|++|++++|.++ +..+..+.++++|++|+
T Consensus 13 ~~~~~c~~~~l~~ip~~-----~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDD-----IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSCCSSCCTT-----SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred CCceEccCCCcccCCCC-----CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeE
Confidence 35677777777777542 1256777777777777766666666677777777666665 33344555666666666
Q ss_pred ccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCc-cCcccccCCCCCCEEeCCCCcCC
Q 045210 279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLSFNRLE 357 (873)
Q Consensus 279 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~ 357 (873)
+++|.+++..|..++++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|+++
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 66666665555566666666666666666555444555555666666666665553 34555555555555555555555
Q ss_pred CcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccC-cc
Q 045210 358 SKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS-GH 436 (873)
Q Consensus 358 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~ 436 (873)
+..+..++.+++|+ ..+++|++++|.+.+..+..+... +|++|++++|.+. +.
T Consensus 167 ~~~~~~~~~l~~L~-------------------------~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~ 220 (606)
T 3vq2_A 167 TITVNDLQFLRENP-------------------------QVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNI 220 (606)
T ss_dssp EECTTTTHHHHHCT-------------------------TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHH
T ss_pred ecChhhhhhhhccc-------------------------cccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhH
Confidence 44444443333221 013456666666555444433333 6777777777665 34
Q ss_pred ccccccCCCCCCEEEccCccCCcc-----cChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCc
Q 045210 437 IPLSLGQLSSLRYLDVSTNNLNGT-----LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQF 511 (873)
Q Consensus 437 ~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 511 (873)
.|..+.+++.|+.+++..+.+.+. +....+..+.
T Consensus 221 ~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~----------------------------------------- 259 (606)
T 3vq2_A 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC----------------------------------------- 259 (606)
T ss_dssp HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG-----------------------------------------
T ss_pred HHHHhccccccccccccccccccCCcccccChHHhhhhh-----------------------------------------
Confidence 556666677776666654443211 1111111111
Q ss_pred chhhhcCCcccEEEc-cCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCC-CCCC
Q 045210 512 PQWLLSQNHLIYLDL-SNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL-IPSS 589 (873)
Q Consensus 512 ~~~l~~~~~L~~L~l-~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~ 589 (873)
.+ .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +|.+..+++|++|++++|.+ +.+|. ..++
T Consensus 260 -----~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~ 329 (606)
T 3vq2_A 260 -----DV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQL-KQFPTLDLPF 329 (606)
T ss_dssp -----GS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCC-SSCCCCCCSS
T ss_pred -----hc-cHhheeccccccccccccc--cccCCCCCEEEecCccchh-hhhccccccCCEEEcccccC-cccccCCCCc
Confidence 11 2333333 33333333333 3344455555555555432 22444555555555555555 33333 2455
Q ss_pred CcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCC--CChhhhccccCcEEEcCCCcCccCCcccccCCCCcc
Q 045210 590 LTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE--IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQ 667 (873)
Q Consensus 590 L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 667 (873)
|++|++++|...+.+ .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++ +|..+..+++|+
T Consensus 330 L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 402 (606)
T 3vq2_A 330 LKSLTLTMNKGSISF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ 402 (606)
T ss_dssp CCEEEEESCSSCEEC------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred cceeeccCCcCccch------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence 666666666443322 134577788888888887765 47778888888888888888774 567778888888
Q ss_pred EEEccCCcccccCC-cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeee-eCCcccCCCCCCCEEeCC
Q 045210 668 ILHLRGNRFSGKIP-VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHG-FFPPELCGLASLKILDLS 745 (873)
Q Consensus 668 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls 745 (873)
.|++++|++.+..| ..+..+++|++|++++|.+++..|..+.. +++|++|++++|++.+ .+|..+..+++|+.|+++
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence 88888888887777 57788888888888888888777777664 8888888888888887 467778888888888888
Q ss_pred CCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeC
Q 045210 746 SNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKL 825 (873)
Q Consensus 746 ~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~L 825 (873)
+|++++..|..++.+++| +.|++++|++++.+|..++++++|++|++
T Consensus 482 ~n~l~~~~~~~~~~l~~L---------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 482 KCQLEQISWGVFDTLHRL---------------------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TSCCCEECTTTTTTCTTC---------------------------------CEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCcCCccChhhhcccccC---------------------------------CEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 888888777777766665 78888888888888888888888888888
Q ss_pred CCCcCcccCCccccCCC-CCCeEeccCCccccccc
Q 045210 826 SHNFFSGRIPVNMGAMK-SVEALDFSSNRLQGEIP 859 (873)
Q Consensus 826 s~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~iP 859 (873)
++|+++ .+|..+..++ +|+.|++++|++.+..|
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 888888 6777777775 58888888888886554
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-51 Score=481.35 Aligned_cols=518 Identities=20% Similarity=0.182 Sum_probs=378.5
Q ss_pred CCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEEC
Q 045210 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDL 303 (873)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 303 (873)
.+++|++++|.++++.+..|+++++|++|++++|.+. ...+..+.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 5677777777777777777777777777777777765 444556666777777777777666666666666777777777
Q ss_pred CCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCC--EEEccCCcCc
Q 045210 304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLR--SVNLSGNKLS 381 (873)
Q Consensus 304 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~ 381 (873)
++|.+++..|..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 77766655455566666666666666666653323333466666666666666655556666665554 4444444443
Q ss_pred chhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCccc
Q 045210 382 QEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTL 461 (873)
Q Consensus 382 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 461 (873)
+ ..|..+. ...|++|++++|. .++..+..+.+++...+.-..+.+.
T Consensus 193 ~-----------------------------~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~- 238 (606)
T 3t6q_A 193 G-----------------------------IEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDM- 238 (606)
T ss_dssp E-----------------------------ECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTS-
T ss_pred c-----------------------------cChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhccc-
Confidence 3 2222222 2344555555443 1222233333332222221111100
Q ss_pred ChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcC--CcccEEEccCCCCCcccChhH
Q 045210 462 SENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ--NHLIYLDLSNSSISDTIPDRL 539 (873)
Q Consensus 462 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~n~l~~~~p~~~ 539 (873)
.. ....+..+..+ .+|+.|++++|.+.+ ++...
T Consensus 239 -----------~~---------------------------------~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~ 273 (606)
T 3t6q_A 239 -----------DD---------------------------------EDISPAVFEGLCEMSVESINLQKHYFFN-ISSNT 273 (606)
T ss_dssp -----------CC---------------------------------CCCCGGGGGGGGGSEEEEEECTTCCCSS-CCTTT
T ss_pred -----------cc---------------------------------cccChhHhchhhcCceeEEEeecCccCc-cCHHH
Confidence 00 00001112221 268888888888864 55556
Q ss_pred HhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCC---CCCCcEEEccCccCcCcchhhhhhhcccCC
Q 045210 540 VKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLI---PSSLTTLDLSSNFLSGTLSRFLCNEMNNSM 616 (873)
Q Consensus 540 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~ 616 (873)
+..+++|++|++++|.++...+.+..+++|++|++++|.+.+..|.. +++|++|++++|.+.+.++.. .+..++
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~ 350 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG---CLENLE 350 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS---TTTTCT
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh---hhhccC
Confidence 67789999999999999865558899999999999999998775543 689999999999998777654 245689
Q ss_pred CCceEeccCCcccCCC--ChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcc-cccCCCCcEE
Q 045210 617 RLQVLNLGNNTLSGEI--PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS-LQNCTELRLF 693 (873)
Q Consensus 617 ~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L 693 (873)
+|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..+++|+.|++++|++++..|.. +..+++|++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 9999999999998765 778999999999999999999888899999999999999999999877654 8899999999
Q ss_pred EccCCeecccCChhHHhhcccCcEEEccCCeeeee---CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcch
Q 045210 694 DISENEFVGNIPTWIGERLSGIILLSLRANQFHGF---FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEV 770 (873)
Q Consensus 694 ~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~ 770 (873)
++++|.+.+..|..+.. +++|++|++++|++.+. .+..+..+++|+.|++++|.+++..|..++.+++|
T Consensus 431 ~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------- 502 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM------- 502 (606)
T ss_dssp ECTTCCCBTTCTTTTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC-------
T ss_pred ECCCCccCCcCHHHHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC-------
Confidence 99999999777777765 99999999999999872 33568889999999999999998888888877766
Q ss_pred hhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEecc
Q 045210 771 DKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFS 850 (873)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls 850 (873)
+.||+++|++++.+|..+.+++.| .|++++|.+++..|..++.+++|+.++++
T Consensus 503 --------------------------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 503 --------------------------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp --------------------------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred --------------------------CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 899999999999999999999999 99999999999888889999999999999
Q ss_pred CCccccccc
Q 045210 851 SNRLQGEIP 859 (873)
Q Consensus 851 ~N~l~g~iP 859 (873)
+|++.+..+
T Consensus 556 ~N~~~c~c~ 564 (606)
T 3t6q_A 556 QNPLDCTCS 564 (606)
T ss_dssp TCCEECSGG
T ss_pred CCCccccCC
Confidence 999998766
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-53 Score=495.66 Aligned_cols=81 Identities=22% Similarity=0.251 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHhhhcCCCCC--------CCcCCCccCCCCCCccc---eeeEecCCCCcEEEEecCCCCCCCCCchhhh
Q 045210 34 GCIESEREALLSFKQDLEDPS--------NRLASWNNIGVGDCCKW---YGVVCDNITGHVLELRLRNPSRDDGSPAEYE 102 (873)
Q Consensus 34 ~~~~~~~~~ll~~k~~~~~~~--------~~~~~W~~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~ 102 (873)
+....|++||.++|+++.++. ....+|+ . +++||.| .||+|+. .|||++|+|++.
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~-~-~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~----------- 91 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN-F-NKELDMWGAQPGVSLNS-NGRVTGLSLEGF----------- 91 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC-C-SSCGGGTTCCTTEEECT-TCCEEEEECTTS-----------
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC-C-CCCcccccCCCCeEEcC-CCCEEEEEecCc-----------
Confidence 344679999999999986443 1234798 4 6899999 9999975 499999999996
Q ss_pred hccccceeeecccCccCCCCCCeecCCCCCC
Q 045210 103 AYERSKIVGKINPSLLGLKHLIHLDLSYNDF 133 (873)
Q Consensus 103 ~~~~~~~~g~~~~~l~~l~~L~~L~Ls~n~~ 133 (873)
++.|.+|++++++++|++|+|++|.+
T Consensus 92 -----~l~g~lp~~l~~L~~L~~L~Ls~N~~ 117 (636)
T 4eco_A 92 -----GASGRVPDAIGQLTELEVLALGSHGE 117 (636)
T ss_dssp -----CCEEEECGGGGGCTTCCEEESCCGGG
T ss_pred -----ccCCcCChHHhcCccceEEECcCCcc
Confidence 89999999999999999999999976
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.8e-51 Score=477.75 Aligned_cols=539 Identities=20% Similarity=0.203 Sum_probs=405.0
Q ss_pred CCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCcc
Q 045210 171 NLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLV 250 (873)
Q Consensus 171 ~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 250 (873)
.-++++.+++.++.+|... .+++++|++++|.+++.+. ..+.++++|++|++++|.++++.|.+|.++++|+
T Consensus 12 ~~~~~~c~~~~l~~ip~~~------~~~l~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 12 PNITYQCMDQKLSKVPDDI------PSSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83 (606)
T ss_dssp TTTEEECTTSCCSSCCTTS------CTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCceEccCCCcccCCCCC------CCCcCEEECCCCCcCEeCh--hhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence 3468999999999998752 2789999999999988753 3578999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCC-CCchhhhcCCCcCEEEccC
Q 045210 251 TLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSY 329 (873)
Q Consensus 251 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~ 329 (873)
+|++++|.+. +..|..+.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++
T Consensus 84 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 84 NLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp EEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred EeECCCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 9999999997 5568889999999999999999998777889999999999999999986 6799999999999999999
Q ss_pred CcCCccCcccccCCCCCC----EEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcch-hhHHHHHhhhcccccccEEEc
Q 045210 330 NELQGSIPGSLGNLTSIK----SLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQE-ISQVLDMFSACASNVLESLDL 404 (873)
Q Consensus 330 n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~L~~L~L 404 (873)
|.+++..|..++.+++|+ +|++++|.+++..+..+... +|+.|++++|.+.+. .+..+.... .++.+++
T Consensus 163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~-----~L~~l~l 236 (606)
T 3vq2_A 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLA-----GLHVHRL 236 (606)
T ss_dssp SCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTT-----TCEEEEE
T ss_pred CcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccc-----ccccccc
Confidence 999988888887776654 89999999987655555544 788888888877642 222222211 1555555
Q ss_pred cCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEc-cCccCCcccChhhhhcccccceEEcCCCeee
Q 045210 405 SNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDV-STNNLNGTLSENHFANLTKLVGFDASGNSLV 483 (873)
Q Consensus 405 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 483 (873)
..+.+.+. ..+.. +....+..+..+ .++.+++ ..+.+.+.++. +..+++|+.+++++|.+.
T Consensus 237 ~~~~~~~~--------~~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~ 298 (606)
T 3vq2_A 237 ILGEFKDE--------RNLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK 298 (606)
T ss_dssp EEECCTTS--------CCCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC
T ss_pred cccccccC--------Ccccc-------cChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccch
Confidence 43332211 00000 011111222222 3444454 44445444433 445555555555444332
Q ss_pred ccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCc
Q 045210 484 LKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDL 563 (873)
Q Consensus 484 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~ 563 (873)
.+| ++..+++|+.|++++|.+ +.+|.. .+++|++|++++|...+.. .+
T Consensus 299 --------------------------~l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~-~~ 346 (606)
T 3vq2_A 299 --------------------------YLE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISF-KK 346 (606)
T ss_dssp --------------------------CCC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEEC-CC
T ss_pred --------------------------hhh-hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccch-hh
Confidence 122 334455566666666666 455522 4566666666666443322 23
Q ss_pred cccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcc--hhhhhhhcccCCCCceEeccCCcccCCCChhhhcccc
Q 045210 564 NDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTL--SRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSF 641 (873)
Q Consensus 564 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 641 (873)
..+ ++|++|++++|.+++.. +.. +..+++|++|++++|.+++ +|..+..+++
T Consensus 347 ~~l---------------------~~L~~L~ls~n~l~~~~~~~~~----~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~ 400 (606)
T 3vq2_A 347 VAL---------------------PSLSYLDLSRNALSFSGCCSYS----DLGTNSLRHLDLSFNGAII-MSANFMGLEE 400 (606)
T ss_dssp CCC---------------------TTCCEEECCSSCEEEEEECCHH----HHCCSCCCEEECCSCSEEE-ECCCCTTCTT
T ss_pred ccC---------------------CCCCEEECcCCccCCCcchhhh----hccCCcccEeECCCCcccc-chhhccCCCC
Confidence 334 45555556666555442 343 3448899999999999885 5688889999
Q ss_pred CcEEEcCCCcCccCCc-ccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeeccc-CChhHHhhcccCcEEE
Q 045210 642 LFFLHLGENDFTGNLP-TSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN-IPTWIGERLSGIILLS 719 (873)
Q Consensus 642 L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-ip~~~~~~l~~L~~L~ 719 (873)
|+.|++++|++.+..| ..+..+++|++|++++|++++..|..+..+++|++|++++|++++. +|..+.. +++|+.|+
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~ 479 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLD 479 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEE
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-CCCCCEEE
Confidence 9999999999998777 6788999999999999999998999999999999999999999874 6766664 99999999
Q ss_pred ccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEE
Q 045210 720 LRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVL 799 (873)
Q Consensus 720 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 799 (873)
+++|++++..|..+..+++|+.|++++|++++.+|..++++++| +.|
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------~~L 526 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL---------------------------------STL 526 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC---------------------------------CEE
T ss_pred CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC---------------------------------CEE
Confidence 99999999999999999999999999999998889888877766 899
Q ss_pred ECCCCcccccCChhhhcCC-CCCeeeCCCCcCcccCC
Q 045210 800 DLSANYFSGEIPSQVTNLV-GLQTLKLSHNFFSGRIP 835 (873)
Q Consensus 800 ~ls~n~l~~~ip~~l~~l~-~L~~L~Ls~N~l~~~ip 835 (873)
|+++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus 527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999998 6888899887 59999999999997665
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.6e-50 Score=474.70 Aligned_cols=359 Identities=21% Similarity=0.255 Sum_probs=239.0
Q ss_pred cccCCHHHHHHHHHhhhcCCCCCCCcCCCccCC---CCCC--ccc------------eeeEecCCCCcEEEEecCCCCCC
Q 045210 32 AAGCIESEREALLSFKQDLEDPSNRLASWNNIG---VGDC--CKW------------YGVVCDNITGHVLELRLRNPSRD 94 (873)
Q Consensus 32 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~---~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~ 94 (873)
.+++..+|++||++||+++.+| +|+..+ ..+| |.| .||+|+. .|||++|+|++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~--- 333 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF--- 333 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT---
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC---
Confidence 3446678999999999999776 787431 1355 999 9999976 699999999996
Q ss_pred CCCchhhhhccccceeeecccCccCCCCCCeecC-CCCCCCCCCCCccc-------------------------------
Q 045210 95 DGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDL-SYNDFQGIQIPRFL------------------------------- 142 (873)
Q Consensus 95 ~~~~~~~~~~~~~~~~g~~~~~l~~l~~L~~L~L-s~n~~~~~~~~~~l------------------------------- 142 (873)
++.|.+|++|+++++|++|+| ++|.+.+. .|...
T Consensus 334 -------------~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~ 399 (876)
T 4ecn_A 334 -------------GAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399 (876)
T ss_dssp -------------CCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred -------------CCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence 899999999999999999999 88876554 12110
Q ss_pred --------------------cCCCCCCEEeccC--CcCCCCCcccccCCCCCcEEECCCCCCCCC--ccCccccccCCCC
Q 045210 143 --------------------GSLENLMYLNISR--AGFVGIIPHQIGNLSNLQFLDLRPNYLGGL--YVEDFGWVSHLSL 198 (873)
Q Consensus 143 --------------------~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l--~~~~~~~l~~l~~ 198 (873)
.....++.+.+.. |.+++ +|..++++++|++|+|++|.++.. +... +.
T Consensus 400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---~~---- 471 (876)
T 4ecn_A 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---ED---- 471 (876)
T ss_dssp SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---SC----
T ss_pred hhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc---cc----
Confidence 1111222222222 45555 566666666666666666655431 0000 00
Q ss_pred CcEEeCCCCCCCCCCCcccccc--CCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCC-CCCC-chhHhhcCCC--
Q 045210 199 LKHLDLSGVDLSKTSDGPLITN--SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ-FADS-SIVNQVLGLV-- 272 (873)
Q Consensus 199 L~~L~L~~~~l~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~~l~-- 272 (873)
.+.+...+ ..+..++ .+++|++|++++|.+.+..|..|+++++|++|++++|+ ++ + .+|..++.++
T Consensus 472 -----~s~n~~~g--~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls-g~~iP~~i~~L~~~ 543 (876)
T 4ecn_A 472 -----ANSDYAKQ--YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLADD 543 (876)
T ss_dssp -----TTSHHHHH--HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC-HHHHHHHHHHHHHC
T ss_pred -----cccccccc--cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc-cccchHHHHhhhhc
Confidence 00000000 0122334 77778888888888777778888888888888888887 65 5 5676665544
Q ss_pred -----CCcEEEccCCcCCCCChh--hhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCC
Q 045210 273 -----NLVFLDLSTNNFQGAVPD--AIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345 (873)
Q Consensus 273 -----~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 345 (873)
+|++|++++|.++ .+|. .+.++++|++|++++|.++ .+| .++.+++|++|++++|.++ .+|..+..+++
T Consensus 544 ~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~ 619 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619 (876)
T ss_dssp TTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECT
T ss_pred ccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccc
Confidence 7777777777777 6666 6777777777777777777 666 6777777777777777777 66766777777
Q ss_pred -CCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCcccc---ccC--C
Q 045210 346 -IKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTN---QIG--N 419 (873)
Q Consensus 346 -L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~l~--~ 419 (873)
|++|++++|.++ .+|..+..++. +.|+.|++++|.+.+.+|. .++ .
T Consensus 620 ~L~~L~Ls~N~L~-~lp~~~~~~~~---------------------------~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 620 QVEGLGFSHNKLK-YIPNIFNAKSV---------------------------YVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TCCEEECCSSCCC-SCCSCCCTTCS---------------------------SCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred cCCEEECcCCCCC-cCchhhhcccc---------------------------CCCCEEECcCCcCCCccccchhhhcccc
Confidence 777777777776 45554444332 1255666666666554432 122 3
Q ss_pred CCCCCEEeCCCCccCccccccc-cCCCCCCEEEccCccCCcccCh
Q 045210 420 FKNLDSLDLSFNNISGHIPLSL-GQLSSLRYLDVSTNNLNGTLSE 463 (873)
Q Consensus 420 l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~ 463 (873)
+++|+.|++++|+++ .+|..+ ..+++|++|++++|++. .+|.
T Consensus 672 ~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 672 GINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred CCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 458899999999988 556554 47889999999999887 5555
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-48 Score=469.56 Aligned_cols=534 Identities=22% Similarity=0.239 Sum_probs=325.5
Q ss_pred eecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCC-CCCccCccccccCCCCCcEEe
Q 045210 125 HLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYL-GGLYVEDFGWVSHLSLLKHLD 203 (873)
Q Consensus 125 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~l~~L~~L~ 203 (873)
..|.++++++. +|. ..++|++|+|++|.+++..|..|+++++|++|++++|.. ..+++.
T Consensus 8 ~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~--------------- 67 (844)
T 3j0a_A 8 IAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE--------------- 67 (844)
T ss_dssp EEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTT---------------
T ss_pred EEEccCCCCCC--CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHH---------------
Confidence 34455555554 454 346677777777777766677777777777777776632 222222
Q ss_pred CCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHh--hcCCCCCcEEEccC
Q 045210 204 LSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQ--VLGLVNLVFLDLST 281 (873)
Q Consensus 204 L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~ 281 (873)
.+.++++|++|++++|.+.+..|..|+++++|++|++++|.+. +.++.. +.++++|++|++++
T Consensus 68 --------------~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 68 --------------AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS-DAVLKDGYFRNLKALTRLDLSK 132 (844)
T ss_dssp --------------TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCS-SCCSTTCCCSSCSSCCEEEEES
T ss_pred --------------HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCC-cccccCccccccCCCCEEECCC
Confidence 2334444555555555555555555666666666666666655 322322 55666666666666
Q ss_pred CcCCCCCh-hhhcCCCCCCEEECCCCCCCCCCchhhhcC--CCcCEEEccCCcCCccCcccccCCCC------CCEEeCC
Q 045210 282 NNFQGAVP-DAIQNSTSLQHLDLSRNHFSSSVPDWFNKF--IDLEYLSLSYNELQGSIPGSLGNLTS------IKSLDLS 352 (873)
Q Consensus 282 n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~ 352 (873)
|.+++..+ ..++++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..|..++.+++ |++|+++
T Consensus 133 N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls 212 (844)
T 3j0a_A 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212 (844)
T ss_dssp CCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred CcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence 66655433 456666666666666666666666666655 66666777766666666655555544 6777777
Q ss_pred CCcCCCcchhhhhcC---CCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCC--CCCCEEe
Q 045210 353 FNRLESKIPRAFKRL---RHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNF--KNLDSLD 427 (873)
Q Consensus 353 ~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~ 427 (873)
+|.+++..+..+... .+++.+.+..+.... .+..+.+.+.....+..+ ++|+.|+
T Consensus 213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~--------------------~~~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGA--------------------GFGFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC--------------------SSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred CCcCchhHHHHHHhhcCcccccceecccccccc--------------------cccccccCCCChhhhhccccCCccEEE
Confidence 776666555554432 345555555322211 001111222222222222 3455555
Q ss_pred CCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEecccccc
Q 045210 428 LSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFI 507 (873)
Q Consensus 428 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~ 507 (873)
+++|.+.+..+..+..+++|++|++++|.+.+..+. .|..+++|+.|++++|.+.
T Consensus 273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~------------------------ 327 (844)
T 3j0a_A 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLG------------------------ 327 (844)
T ss_dssp CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEESCCCS------------------------
T ss_pred CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCCCCCC------------------------
Confidence 555554444444444555555555555544422222 3444444444444433322
Q ss_pred CCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCC
Q 045210 508 GPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP 587 (873)
Q Consensus 508 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 587 (873)
...|..+..+++|+.|++++|.+.+ ++...+..+++|++|++++|.+++. ..+++|+.|++++|++. .+|...
T Consensus 328 -~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~L~~L~l~~N~l~-~l~~~~ 400 (844)
T 3j0a_A 328 -ELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALTTI----HFIPSIPDIFLSGNKLV-TLPKIN 400 (844)
T ss_dssp -CCCSCSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSCCC----SSCCSCSEEEEESCCCC-CCCCCC
T ss_pred -ccCHHHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCCcc----cCCCCcchhccCCCCcc-cccccc
Confidence 1223334445555555555555532 3333344556666666666665532 22566777777777776 445556
Q ss_pred CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCCh-hhhccccCcEEEcCCCcCc-----cCCccccc
Q 045210 588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPD-CWMNWSFLFFLHLGENDFT-----GNLPTSLG 661 (873)
Q Consensus 588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~-----~~~p~~l~ 661 (873)
.+++.+++++|.+++.....+ +.++++|+.|++++|++++..+. .+..+++|+.|++++|.+. +..|..+.
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYF---LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHH---HTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred cccceeecccCccccCchhhh---hhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 778888888888876433221 34588899999999999865443 4556789999999999987 44456788
Q ss_pred CCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCE
Q 045210 662 TLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKI 741 (873)
Q Consensus 662 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 741 (873)
.+++|+.|+|++|++++..|..+..+++|+.|+|++|++++ +|...+ .++|+.|++++|++++.+|..+ ++|+.
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~--~~~L~~L~Ls~N~l~~~~~~~~---~~L~~ 551 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDL--PANLEILDISRNQLLAPNPDVF---VSLSV 551 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCC--CSCCCEEEEEEECCCCCCSCCC---SSCCE
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhh--hccccEEECCCCcCCCCChhHh---CCcCE
Confidence 89999999999999998888889999999999999999985 444443 3889999999999999888765 47889
Q ss_pred EeCCCCccccccC
Q 045210 742 LDLSSNNLTGVIP 754 (873)
Q Consensus 742 L~Ls~N~l~~~ip 754 (873)
|++++|++.+..+
T Consensus 552 l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 552 LDITHNKFICECE 564 (844)
T ss_dssp EEEEEECCCCSSS
T ss_pred EEecCCCcccccc
Confidence 9999999887554
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-48 Score=467.14 Aligned_cols=531 Identities=22% Similarity=0.246 Sum_probs=318.6
Q ss_pred EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCch-hHhhcCCCCCcEEEc
Q 045210 201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSI-VNQVLGLVNLVFLDL 279 (873)
Q Consensus 201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L 279 (873)
..+.++++++.+|. ..+++++|++++|.++++.+..|.++++|++|++++|... +.+ +..+.++++|++|+|
T Consensus 8 ~~dcs~~~L~~vP~------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEESCCCSSCCCS------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-CEECTTTTSSCTTCCEEEC
T ss_pred EEEccCCCCCCCCC------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEEC
Confidence 34555555665542 3467888888888888888888888888888888888654 444 567778888888888
Q ss_pred cCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchh--hhcCCCcCEEEccCCcCCccCc-ccccCCCCCCEEeCCCCcC
Q 045210 280 STNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDW--FNKFIDLEYLSLSYNELQGSIP-GSLGNLTSIKSLDLSFNRL 356 (873)
Q Consensus 280 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l 356 (873)
++|.+++..|..+.++++|++|++++|.+++.+|.. ++++++|++|++++|.+++..+ ..++++++|++|++++|.+
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 888887777778888888888888888877655554 7777777888877777775543 4577777777777777777
Q ss_pred CCcchhhhhcC--CCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCC------CCEEeC
Q 045210 357 ESKIPRAFKRL--RHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKN------LDSLDL 428 (873)
Q Consensus 357 ~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L 428 (873)
++..+..+..+ ++ |+.|++++|.+.+..|..++.+++ |++|++
T Consensus 161 ~~~~~~~l~~l~~~~-----------------------------L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L 211 (844)
T 3j0a_A 161 FLVCEHELEPLQGKT-----------------------------LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211 (844)
T ss_dssp CCCCSGGGHHHHHCS-----------------------------SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBC
T ss_pred CeeCHHHcccccCCc-----------------------------cceEECCCCccccccccchhhcCCccccCceeEEec
Confidence 76666665544 33 555666666665555555555544 788888
Q ss_pred CCCccCccccccccCC---CCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCC--CCccccEEecc
Q 045210 429 SFNNISGHIPLSLGQL---SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWT--PPFQLQAIGLS 503 (873)
Q Consensus 429 ~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~ 503 (873)
++|.+++..+..+... .+++.+.+..+........ +.+... ....+. .+.+++.|+++
T Consensus 212 s~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~----------------~~l~~~-~~~~f~~l~~~~L~~L~Ls 274 (844)
T 3j0a_A 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF----------------HNIKDP-DQNTFAGLARSSVRHLDLS 274 (844)
T ss_dssp SSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC----------------SSSTTG-GGTTTTTTTTSCCCEEECT
T ss_pred CCCcCchhHHHHHHhhcCcccccceecccccccccccc----------------cccCCC-ChhhhhccccCCccEEECC
Confidence 8887777666655432 4566676664332211100 000000 000000 12344444454
Q ss_pred ccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCC
Q 045210 504 SCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGP 582 (873)
Q Consensus 504 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~ 582 (873)
+|.+....+..+..+++|+.|++++|++.+..|. .+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+.
T Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 353 (844)
T 3j0a_A 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353 (844)
T ss_dssp TCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred CCcccccChhhhhcCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence 4444444455555566666666666665543332 23445556666666665555444 455555555555555544433
Q ss_pred CCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccC
Q 045210 583 LPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGT 662 (873)
Q Consensus 583 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 662 (873)
. +.. +..+++|+.|++++|.+++. ..+++|+.|++++|+++ .+|..
T Consensus 354 ~---------------------~~~----~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~--- 399 (844)
T 3j0a_A 354 Q---------------------DQT----FKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI--- 399 (844)
T ss_dssp C---------------------SSC----SCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---
T ss_pred C---------------------hhh----hcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---
Confidence 2 221 23355566666666655521 12555666666666665 33432
Q ss_pred CCCccEEEccCCcccccCC-cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeee-----eeCCcccCCC
Q 045210 663 LSSLQILHLRGNRFSGKIP-VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFH-----GFFPPELCGL 736 (873)
Q Consensus 663 l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l 736 (873)
..+++.|++++|++++... ..+..+++|+.|++++|++++..+......+++|+.|++++|.+. +..|..+..+
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence 3456666666666654321 223456666666666666654333322223566666666666665 3334456666
Q ss_pred CCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhc
Q 045210 737 ASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTN 816 (873)
Q Consensus 737 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~ 816 (873)
++|+.|+|++|.+++..|..+..+++| +.|||++|++++..|..+.
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------~~L~Ls~N~l~~l~~~~~~- 525 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTAL---------------------------------RGLSLNSNRLTVLSHNDLP- 525 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSC---------------------------------SEEEEESCCCSSCCCCCCC-
T ss_pred ccccEEECCCCcccccChhHccchhhh---------------------------------heeECCCCCCCccChhhhh-
Confidence 777777777777776666666555554 6677777777755554444
Q ss_pred CCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccc
Q 045210 817 LVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGE 857 (873)
Q Consensus 817 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 857 (873)
++|+.|+|++|++++.+|..+ .+|+.+++++|++.+.
T Consensus 526 -~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 526 -ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp -SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred -ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence 667777777777777776654 3566777777776653
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-47 Score=441.32 Aligned_cols=187 Identities=20% Similarity=0.231 Sum_probs=105.6
Q ss_pred CCCCceEeccCCcccCCC--ChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcE
Q 045210 615 SMRLQVLNLGNNTLSGEI--PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRL 692 (873)
Q Consensus 615 ~~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 692 (873)
+++|++|++++|++++.. |..+..+++|++|++++|++.+ ..+. +..+++|++
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------------~~~~-~~~l~~L~~ 400 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------------------------MSSN-FLGLEQLEH 400 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE------------------------EEEE-EETCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc------------------------cccc-ccccCCCCE
Confidence 455555556555555332 4445555555555555555543 2222 444455555
Q ss_pred EEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccc-cccChhhhhhhcCchhhcchh
Q 045210 693 FDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLT-GVIPRCINNLAGMAKEVLEVD 771 (873)
Q Consensus 693 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~~~~~~~ 771 (873)
|++++|.+.+..|...+..+++|++|++++|++.+..|..+..+++|+.|++++|.++ +.+|..++.+++|
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L-------- 472 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------- 472 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC--------
Confidence 5555555544333222223555555555555555555555666666666666666665 4555555554444
Q ss_pred hhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccC
Q 045210 772 KFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSS 851 (873)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 851 (873)
+.||+++|++++..|..++++++|++|++++|.+++..|..++.+++|+.|++++
T Consensus 473 -------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 473 -------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp -------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -------------------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence 5666666666666666666666666666666666666666666666666666666
Q ss_pred Cccccccc
Q 045210 852 NRLQGEIP 859 (873)
Q Consensus 852 N~l~g~iP 859 (873)
|++++.+|
T Consensus 528 N~~~~~~~ 535 (570)
T 2z63_A 528 NPWDCSCP 535 (570)
T ss_dssp SCBCCCTT
T ss_pred CcccCCCc
Confidence 66666665
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-45 Score=424.87 Aligned_cols=490 Identities=23% Similarity=0.245 Sum_probs=310.3
Q ss_pred CCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEE
Q 045210 223 HSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLD 302 (873)
Q Consensus 223 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 302 (873)
+++++|++++|.++++.+.+|.++++|++|++++|.++ +..+..+.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 35666666666666666666666666666666666664 22234455556666666666655554455555556666666
Q ss_pred CCCCCCCCCCchhhhcCCCcCEEEccCCcCCc-cCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 045210 303 LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLS 381 (873)
Q Consensus 303 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 381 (873)
+++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+..++.+++|
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 175 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM----------- 175 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC-----------
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc-----------
Confidence 66555554333345555555555555555554 245555555555555555555554444444443333
Q ss_pred chhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCc-cccccccCCCCCCEEEccCccCCcc
Q 045210 382 QEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISG-HIPLSLGQLSSLRYLDVSTNNLNGT 460 (873)
Q Consensus 382 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~ 460 (873)
... .+.+++++|.+.+..+..+..+ +|++|++++|.... .++..+..++.++...+....+...
T Consensus 176 -------------~~~-~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 176 -------------PLL-NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp -------------TTC-CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred -------------chh-hhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 000 1344444444444444433333 45555555543221 2333444444444444332211100
Q ss_pred cChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHH
Q 045210 461 LSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLV 540 (873)
Q Consensus 461 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~ 540 (873)
..++.+ . ...+..++++
T Consensus 241 ---------~~l~~~--~---------------------------------~~~~~~l~~l------------------- 257 (570)
T 2z63_A 241 ---------GNLEKF--D---------------------------------KSALEGLCNL------------------- 257 (570)
T ss_dssp ---------SSCEEC--C---------------------------------TTTTGGGGGS-------------------
T ss_pred ---------hhhhhc--c---------------------------------hhhhcccccc-------------------
Confidence 000000 0 0000000000
Q ss_pred hcCCCCcEEeccCc-ccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCC
Q 045210 541 KSLSQINYLNLSYN-QIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRL 618 (873)
Q Consensus 541 ~~l~~L~~L~l~~n-~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L 618 (873)
.++.+++.++ .+.+..+ .+..+++|++|++++|.+.+ +|.. +..+ +|
T Consensus 258 ----~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~----------------------l~~~----~~~~-~L 306 (570)
T 2z63_A 258 ----TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER----------------------VKDF----SYNF-GW 306 (570)
T ss_dssp ----EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS----------------------CCBC----CSCC-CC
T ss_pred ----chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh----------------------hhhh----hccC-Cc
Confidence 1223333333 2222222 33334444444444433321 1111 2224 66
Q ss_pred ceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccC--CcccccCCCCcEEEcc
Q 045210 619 QVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKI--PVSLQNCTELRLFDIS 696 (873)
Q Consensus 619 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls 696 (873)
++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|+++
T Consensus 307 ~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 307 QHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp SEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred cEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence 77777777776 4444 4677888888888887766654 67899999999999988654 7788899999999999
Q ss_pred CCeecccCChhHHhhcccCcEEEccCCeeeeeCC-cccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhch
Q 045210 697 ENEFVGNIPTWIGERLSGIILLSLRANQFHGFFP-PELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE 775 (873)
Q Consensus 697 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~ 775 (873)
+|.+.+ +|..+. .+++|+.|++++|++.+..| ..+..+++|+.|++++|.+++.+|..++.+++|
T Consensus 382 ~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------ 447 (570)
T 2z63_A 382 FNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------------ 447 (570)
T ss_dssp SCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC------------
T ss_pred CCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC------------
Confidence 999985 555555 49999999999999998876 568899999999999999999999888877766
Q ss_pred hheeeecccceeccCCCCccceEEECCCCccc-ccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcc
Q 045210 776 DALIVYKKKVVKYPIGYPYYLKVLDLSANYFS-GEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL 854 (873)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 854 (873)
+.|++++|.++ +.+|..++.+++|++|++++|.+++..|..++.+++|+.|++++|++
T Consensus 448 ---------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 448 ---------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ---------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ---------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 89999999998 68999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCcccC
Q 045210 855 QGEIPKNMVNLEFLEIFNI 873 (873)
Q Consensus 855 ~g~iP~~l~~l~~L~~l~l 873 (873)
++..|..+.+++.|+++++
T Consensus 507 ~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp SCCCTTTTTTCTTCCEEEC
T ss_pred CCCCHHHhhcccCCcEEEe
Confidence 9988888999999999875
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.3e-45 Score=421.86 Aligned_cols=481 Identities=20% Similarity=0.208 Sum_probs=353.1
Q ss_pred cEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCC
Q 045210 275 VFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354 (873)
Q Consensus 275 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 354 (873)
...+.+++.++ .+|..+. ++|++|++++|.+++..|..++++++|++|++++|++++..|..|+.+++|++|++++|
T Consensus 8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp SEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred ceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 34566666666 4555443 56777777777777666667777777777777777777666666777777777777777
Q ss_pred cCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC-ccccccCCCCCCCEEeCCCCcc
Q 045210 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG-LLTNQIGNFKNLDSLDLSFNNI 433 (873)
Q Consensus 355 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l 433 (873)
.+++..+..++.+++ |++|++++|.+++ ..|..++.+++|++|++++|++
T Consensus 85 ~l~~~~~~~~~~l~~-----------------------------L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 85 HLSSLSSSWFGPLSS-----------------------------LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135 (549)
T ss_dssp CCCSCCHHHHTTCTT-----------------------------CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred ccCccCHHHhccCCC-----------------------------CcEEECCCCcccccchhhhhhccCCccEEECCCCcc
Confidence 777666666666665 4444444444444 2456788889999999999885
Q ss_pred Ccccc-ccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcc
Q 045210 434 SGHIP-LSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFP 512 (873)
Q Consensus 434 ~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 512 (873)
.+.+| ..+.++++|++|++++|.+++.++. .+..+++|+.+++++|... .+|
T Consensus 136 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~--------------------------~~~ 188 (549)
T 2z81_A 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESA--------------------------FLL 188 (549)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBST--------------------------THH
T ss_pred ccccCHhhhhcccccCeeeccCCcccccChh-hhhccccCceEecccCccc--------------------------ccc
Confidence 44554 5788889999999999988866655 5777777777777766532 123
Q ss_pred hh-hhcCCcccEEEccCCCCCccc--ChhHHhcCCCCcEEeccCcccccccC-----CccccCCCCeEeCCCCCCCCC--
Q 045210 513 QW-LLSQNHLIYLDLSNSSISDTI--PDRLVKSLSQINYLNLSYNQIFGQIP-----DLNDAAQLETLDLSSNSLSGP-- 582 (873)
Q Consensus 513 ~~-l~~~~~L~~L~l~~n~l~~~~--p~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~L~~L~l~~n~l~~~-- 582 (873)
.+ +..+++|++|++++|++.+.. |......+++|+.|++++|.+.+..+ .+..+++|+.+++++|.+.+.
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 268 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence 33 345777777888777776532 33334456678888888877765333 345567788888888876552
Q ss_pred -------CCCCCCCCcEEEccCccCcCcchh-hhhhhcccCCCCceEeccCCcccCCCChhh-hccccCcEEEcCCCcCc
Q 045210 583 -------LPLIPSSLTTLDLSSNFLSGTLSR-FLCNEMNNSMRLQVLNLGNNTLSGEIPDCW-MNWSFLFFLHLGENDFT 653 (873)
Q Consensus 583 -------~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~ 653 (873)
.+....+++.+++.++.+...... .+...+....+|+.|++++|.+. .+|..+ ..+++|++|++++|+++
T Consensus 269 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCC
T ss_pred ccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccc
Confidence 123357888888888876542100 00000122578999999999987 677666 57999999999999999
Q ss_pred cCCc---ccccCCCCccEEEccCCcccccCC--cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeee
Q 045210 654 GNLP---TSLGTLSSLQILHLRGNRFSGKIP--VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF 728 (873)
Q Consensus 654 ~~~p---~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 728 (873)
+.+| ..++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+.. +++|++|++++|++++
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-~~~L~~L~Ls~N~l~~- 424 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW-PEKMRFLNLSSTGIRV- 424 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-CTTCCEEECTTSCCSC-
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-cccccEEECCCCCccc-
Confidence 8764 347889999999999999986543 56889999999999999998 78887764 8999999999999874
Q ss_pred CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210 729 FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG 808 (873)
Q Consensus 729 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 808 (873)
+|..+ .++|+.||+++|++++.+ +.+ +.|+.||+++|+++
T Consensus 425 l~~~~--~~~L~~L~Ls~N~l~~~~----~~l---------------------------------~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 425 VKTCI--PQTLEVLDVSNNNLDSFS----LFL---------------------------------PRLQELYISRNKLK- 464 (549)
T ss_dssp CCTTS--CTTCSEEECCSSCCSCCC----CCC---------------------------------TTCCEEECCSSCCS-
T ss_pred ccchh--cCCceEEECCCCChhhhc----ccC---------------------------------ChhcEEECCCCccC-
Confidence 44443 368999999999998643 223 34589999999998
Q ss_pred cCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccc
Q 045210 809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIP 859 (873)
Q Consensus 809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 859 (873)
.||. .+.+++|++|+|++|++++.+|..++.+++|+.|++++|++++..|
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 7887 5789999999999999999999999999999999999999999887
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.6e-44 Score=414.58 Aligned_cols=490 Identities=20% Similarity=0.215 Sum_probs=273.9
Q ss_pred CCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEE
Q 045210 123 LIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHL 202 (873)
Q Consensus 123 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L 202 (873)
..+.|.+++.++. +|..+. ++|++|++++|.+++..|.+++++++|++|++++|.++.+++.. +.++++|++|
T Consensus 7 ~~~c~~~~~~l~~--ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L 79 (549)
T 2z81_A 7 SGVCDGRSRSFTS--IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA---FYSLGSLEHL 79 (549)
T ss_dssp TSEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT---TTTCTTCCEE
T ss_pred CceEECCCCcccc--ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh---ccccccCCEE
Confidence 3345666777764 566543 67888888888887777777888888888888888777655432 2444455555
Q ss_pred eCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCC-CccccCCCCCccEEEcCCCCCCCCchh-HhhcCCCCCcEEEcc
Q 045210 203 DLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHI-SPLSFANFSSLVTLDISDNQFADSSIV-NQVLGLVNLVFLDLS 280 (873)
Q Consensus 203 ~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~ 280 (873)
++++|.+++.+ +..++.+++|++|++++|.+++. .+..++++++|++|++++|.+. +.++ ..+.++++|++|+++
T Consensus 80 ~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 80 DLSDNHLSSLS--SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-SEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp ECTTSCCCSCC--HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-CEECTTTTTTCCEEEEEEEE
T ss_pred ECCCCccCccC--HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc-cccCHhhhhcccccCeeecc
Confidence 55555444432 12234455555555555555442 2344555555555555555422 2222 234444555555555
Q ss_pred CCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhh-hcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCc
Q 045210 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWF-NKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK 359 (873)
Q Consensus 281 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 359 (873)
+|.+++..|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+++....
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------- 214 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS--------------------- 214 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------
T ss_pred CCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc---------------------
Confidence 55554444444444444555555444443 222222 2344444444444444432100
Q ss_pred chhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCcc------ccccCCCCCCCEEeCCCCcc
Q 045210 360 IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLL------TNQIGNFKNLDSLDLSFNNI 433 (873)
Q Consensus 360 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~L~~n~l 433 (873)
.......+++|+.|++++|.+++..+..+....... ..++.+++++|.+.+.. ...+..+++|+.|++.++.+
T Consensus 215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 293 (549)
T 2z81_A 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI-LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293 (549)
T ss_dssp CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC-TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC
T ss_pred ccchhhhhhcccceeccccccchhHHHHHHHHhhhh-ccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence 001112344555555555555444333222111111 12555666655554421 12345567777777777765
Q ss_pred Ccc-----ccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccC
Q 045210 434 SGH-----IPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIG 508 (873)
Q Consensus 434 ~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 508 (873)
... ++..+...++|++|++++|.+. .+|...+..+++|+.|++++|.+...
T Consensus 294 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~----------------------- 349 (549)
T 2z81_A 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE----------------------- 349 (549)
T ss_dssp SCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHH-----------------------
T ss_pred chhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccc-----------------------
Confidence 422 1111223456777777777765 56665555667776666666655432
Q ss_pred CCcc---hhhhcCCcccEEEccCCCCCcccC-hhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCC
Q 045210 509 PQFP---QWLLSQNHLIYLDLSNSSISDTIP-DRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLP 584 (873)
Q Consensus 509 ~~~~---~~l~~~~~L~~L~l~~n~l~~~~p-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 584 (873)
.| .++..+++|++|++++|++.+..+ ...+..+++|++|++++|++++..+.+..+++|++|++++|.+.+...
T Consensus 350 --~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~ 427 (549)
T 2z81_A 350 --YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT 427 (549)
T ss_dssp --HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCT
T ss_pred --cccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccc
Confidence 11 124455667777777776654321 133455666777777777666433355555666666666665543222
Q ss_pred CCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCC
Q 045210 585 LIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLS 664 (873)
Q Consensus 585 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 664 (873)
..+ ++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...++
T Consensus 428 ~~~----------------------------~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~ 473 (549)
T 2z81_A 428 CIP----------------------------QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFP 473 (549)
T ss_dssp TSC----------------------------TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCT
T ss_pred hhc----------------------------CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCc
Confidence 122 35666666666666532 45677888888888877 5665 45678
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCC
Q 045210 665 SLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIP 705 (873)
Q Consensus 665 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip 705 (873)
+|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 474 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 88888888888888878888888888888888888887776
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.4e-45 Score=417.09 Aligned_cols=456 Identities=20% Similarity=0.217 Sum_probs=310.7
Q ss_pred cEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCC
Q 045210 275 VFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFN 354 (873)
Q Consensus 275 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 354 (873)
+++++++|+++ .+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|++++..|..|+.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 35666666666 3454443 56666666666666555555666666666666666666555555566666666666665
Q ss_pred cCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC-ccccccCCCCCCCEEeCCCCcc
Q 045210 355 RLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG-LLTNQIGNFKNLDSLDLSFNNI 433 (873)
Q Consensus 355 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l 433 (873)
++++ +|.. .+++ |++|++++|.+++ .+|..++.+++|++|++++|++
T Consensus 80 ~l~~-lp~~--~l~~-----------------------------L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 80 KLVK-ISCH--PTVN-----------------------------LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CCCE-EECC--CCCC-----------------------------CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred ceee-cCcc--ccCC-----------------------------ccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 5542 3322 2222 5555555555554 3455666777777777777776
Q ss_pred CccccccccCCCCC--CEEEccCccC--CcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCC
Q 045210 434 SGHIPLSLGQLSSL--RYLDVSTNNL--NGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGP 509 (873)
Q Consensus 434 ~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (873)
++ ..+..+++| ++|++++|.+ .+..+. .+..+..
T Consensus 128 ~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~-~l~~l~~-------------------------------------- 165 (520)
T 2z7x_B 128 EK---SSVLPIAHLNISKVLLVLGETYGEKEDPE-GLQDFNT-------------------------------------- 165 (520)
T ss_dssp CG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT-TTTTCCE--------------------------------------
T ss_pred ch---hhccccccceeeEEEeecccccccccccc-ccccccc--------------------------------------
Confidence 64 234555555 7777776666 433332 2222211
Q ss_pred CcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcc-------cccccCCccccCCCCeEeCCCCCCCCC
Q 045210 510 QFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQ-------IFGQIPDLNDAAQLETLDLSSNSLSGP 582 (873)
Q Consensus 510 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~-------~~~~~~~~~~~~~L~~L~l~~n~l~~~ 582 (873)
+...+++++|.+.+.++...+..+++|+.+++++|. +.+.++.+..+++|+.|++++|.+.+.
T Consensus 166 ----------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 166 ----------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp ----------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ----------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 122334444444444444444445555555555554 444445555566666666666555432
Q ss_pred CCC------CCCCCcEEEccCccCcCcchhhhhh-hcccCCCCceEeccCCcccCCCC-hhhhcc---ccCcEEEcCCCc
Q 045210 583 LPL------IPSSLTTLDLSSNFLSGTLSRFLCN-EMNNSMRLQVLNLGNNTLSGEIP-DCWMNW---SFLFFLHLGEND 651 (873)
Q Consensus 583 ~~~------~~~~L~~L~l~~n~l~~~~~~~~~~-~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l---~~L~~L~l~~n~ 651 (873)
.+. ..++|++|++++|.++|.+|..+.. ....+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence 111 1246777777777777766654311 014588899999999998 556 556555 679999999999
Q ss_pred CccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecc--cCChhHHhhcccCcEEEccCCeeeeeC
Q 045210 652 FTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVG--NIPTWIGERLSGIILLSLRANQFHGFF 729 (873)
Q Consensus 652 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~ip~~~~~~l~~L~~L~L~~n~l~~~~ 729 (873)
+.+.. ....+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+.. +++|++|++++|++.+.+
T Consensus 314 l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 314 MVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCG
T ss_pred ccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCccc
Confidence 87432 12678999999999999999899999999999999999999986 56666665 999999999999999866
Q ss_pred Ccc-cCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210 730 PPE-LCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG 808 (873)
Q Consensus 730 p~~-l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 808 (873)
|.. +..+++|+.|++++|++++.+|..+. +.|+.||+++|+++
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----------------------------------~~L~~L~Ls~N~l~- 434 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP-----------------------------------PRIKVLDLHSNKIK- 434 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC-----------------------------------TTCCEEECCSSCCC-
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc-----------------------------------ccCCEEECCCCccc-
Confidence 654 78899999999999999988776543 23589999999999
Q ss_pred cCChhhhcCCCCCeeeCCCCcCcccCCcc-ccCCCCCCeEeccCCccccccc
Q 045210 809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVN-MGAMKSVEALDFSSNRLQGEIP 859 (873)
Q Consensus 809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP 859 (873)
.+|.++..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 89999999999999999999999 57776 8999999999999999998765
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-44 Score=423.92 Aligned_cols=357 Identities=16% Similarity=0.206 Sum_probs=274.1
Q ss_pred CcccCCccccccCCCCCCCEEeCCCCccCcc-----------------cccccc--CCCCCCEEEccCccCCcccChhhh
Q 045210 406 NNTLFGLLTNQIGNFKNLDSLDLSFNNISGH-----------------IPLSLG--QLSSLRYLDVSTNNLNGTLSENHF 466 (873)
Q Consensus 406 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~ 466 (873)
.|.+++ +|..++++++|++|++++|++++. +|..++ ++++|++|++++|.+.+.+|. .+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HH
Confidence 466667 777777888888888888887764 777777 777788888877777776664 45
Q ss_pred hcccccceEEcCCCe-eeccccCCCCCCCccccEEeccccccCCCcchhhhcC------CcccEEEccCCCCCcccCh-h
Q 045210 467 ANLTKLVGFDASGNS-LVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQ------NHLIYLDLSNSSISDTIPD-R 538 (873)
Q Consensus 467 ~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~------~~L~~L~l~~n~l~~~~p~-~ 538 (873)
.++++|+.|++++|. +.+. .+|..+..+ ++|++|++++|++. .+|. .
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~------------------------~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~ 324 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGE------------------------QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET 324 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHH------------------------HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred hcCCCCCEEECcCCCCCccc------------------------cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh
Confidence 566665555555554 3220 244444443 56666666666665 5554 2
Q ss_pred HHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCC-
Q 045210 539 LVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMR- 617 (873)
Q Consensus 539 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~- 617 (873)
.+..+++|++|++++|++.|.+|.+..+++|++|++++ |.++ .+|.. +..+++
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~---------------------N~l~-~lp~~----l~~l~~~ 378 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY---------------------NQIT-EIPAN----FCGFTEQ 378 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCS---------------------SEEE-ECCTT----SEEECTT
T ss_pred hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCC---------------------Cccc-cccHh----hhhhccc
Confidence 34445566666666666665555555555555555544 4444 33333 444788
Q ss_pred CceEeccCCcccCCCChhhhccc--cCcEEEcCCCcCccCCccccc-------CCCCccEEEccCCcccccCCcccccCC
Q 045210 618 LQVLNLGNNTLSGEIPDCWMNWS--FLFFLHLGENDFTGNLPTSLG-------TLSSLQILHLRGNRFSGKIPVSLQNCT 688 (873)
Q Consensus 618 L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~l~~l~ 688 (873)
|++|++++|.++ .+|..+..++ +|+.|++++|++++.+|..+. .+++|++|++++|++++..+..+..++
T Consensus 379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~ 457 (636)
T 4eco_A 379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457 (636)
T ss_dssp CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence 999999999999 7888887765 899999999999999999888 888999999999999944444556799
Q ss_pred CCcEEEccCCeecccCChhHHhhcc-------cCcEEEccCCeeeeeCCcccC--CCCCCCEEeCCCCccccccChhhhh
Q 045210 689 ELRLFDISENEFVGNIPTWIGERLS-------GIILLSLRANQFHGFFPPELC--GLASLKILDLSSNNLTGVIPRCINN 759 (873)
Q Consensus 689 ~L~~L~Ls~n~l~~~ip~~~~~~l~-------~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~l~~ 759 (873)
+|++|++++|+++ .+|...+.... +|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+++
T Consensus 458 ~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~ 534 (636)
T 4eco_A 458 PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534 (636)
T ss_dssp CCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred CCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc
Confidence 9999999999999 89987765333 9999999999999 7888887 99999999999999997 8998888
Q ss_pred hhcCchhhcchhhhchhheeeecccceeccCCCCccceEEEC------CCCcccccCChhhhcCCCCCeeeCCCCcCccc
Q 045210 760 LAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDL------SANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR 833 (873)
Q Consensus 760 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l------s~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 833 (873)
+++| +.|++ ++|++.+.+|..++++++|++|+|++|.+ +.
T Consensus 535 l~~L---------------------------------~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ 580 (636)
T 4eco_A 535 SSTL---------------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK 580 (636)
T ss_dssp CSSC---------------------------------CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred CCCC---------------------------------CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence 7776 78999 56889999999999999999999999999 78
Q ss_pred CCccccCCCCCCeEeccCCccc
Q 045210 834 IPVNMGAMKSVEALDFSSNRLQ 855 (873)
Q Consensus 834 ip~~l~~l~~L~~L~ls~N~l~ 855 (873)
+|..+. ++|+.||+++|++.
T Consensus 581 ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 581 VNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCSCCC--TTCCEEECCSCTTC
T ss_pred cCHhHh--CcCCEEECcCCCCc
Confidence 999876 89999999999775
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.4e-42 Score=406.08 Aligned_cols=540 Identities=22% Similarity=0.215 Sum_probs=327.6
Q ss_pred cEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEc
Q 045210 200 KHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDL 279 (873)
Q Consensus 200 ~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 279 (873)
++.+.++-+++.+|... .+++++|+|++|+++++.+.+|.++++|++|+|++|.++ +..+..+.++++|++|+|
T Consensus 34 ~~~~c~~~~l~~vP~~l-----p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~L 107 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 107 (635)
T ss_dssp TEEECTTSCCSSCCSSS-----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCCcCccCCCC-----CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEc
Confidence 34455555566554311 135666666666666666666666666666666666554 222233444455555555
Q ss_pred cCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCc
Q 045210 280 STNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK 359 (873)
Q Consensus 280 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 359 (873)
++|++++..+.. |.++++|++|++++|++++..+..|+.+++|++|++++|.+++.
T Consensus 108 s~N~l~~l~~~~------------------------f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 108 TGNPIQSLALGA------------------------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp TTCCCCEECGGG------------------------GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred cCCcCCCCCHHH------------------------hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence 555444333344 44444444455544444443334445555555555555554432
Q ss_pred -chhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcc-c
Q 045210 360 -IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH-I 437 (873)
Q Consensus 360 -~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~ 437 (873)
.|..++.+++|++|++++|++++..+..+..+...... ...++++.|.+....+..+ ....++.+++.+|..... .
T Consensus 164 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~-~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~ 241 (635)
T 4g8a_A 164 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-NLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVM 241 (635)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC-CCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHH
T ss_pred CCchhhccchhhhhhcccCccccccccccccchhhhhhh-hhhhhcccCcccccCcccc-cchhhhhhhhhccccccccc
Confidence 34445555555555555555544433333322221111 4456666666655433322 233445556655544322 2
Q ss_pred cccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhc
Q 045210 438 PLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLS 517 (873)
Q Consensus 438 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 517 (873)
+..+..+..++...+..+....... +.......+..
T Consensus 242 ~~~~~~l~~l~~~~l~~~~~~~~~~--------------------------------------------l~~~~~~~~~~ 277 (635)
T 4g8a_A 242 KTCIQGLAGLEVHRLVLGEFRNEGN--------------------------------------------LEKFDKSALEG 277 (635)
T ss_dssp HHHHHTTTTCEEEEEEEECCTTSCC--------------------------------------------CSCCCTTTTGG
T ss_pred chhhcCCcccccccccccccccccc--------------------------------------------ccccccccccc
Confidence 2334445555444443222111000 00000111111
Q ss_pred CCcccEEEccCCCCCc--ccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEc
Q 045210 518 QNHLIYLDLSNSSISD--TIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDL 595 (873)
Q Consensus 518 ~~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 595 (873)
...+...++..+.... ......+....+++.+.+.++.+... +.+.....++.|++.+|.+.+..+.....++.+++
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l 356 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 356 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcccchhhhhccc
Confidence 1222222222111110 00111223345666666666665543 23444556777777777776665556677888888
Q ss_pred cCccCcCcchhhhhhhcccCCCCceEeccCCccc--CCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccC
Q 045210 596 SSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLS--GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRG 673 (873)
Q Consensus 596 ~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 673 (873)
..|......+ ...+++|+.+++++|.+. +..+..+..+.+|+.+++..|.... .+..+..+++|+.+++.+
T Consensus 357 ~~n~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 357 TSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp ESCCSCCBCC------CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred ccccCCCCcc------cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhh
Confidence 7777654332 234778888999888875 3456777788889999999888774 455677889999999988
Q ss_pred CcccccCC-cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeee-eeCCcccCCCCCCCEEeCCCCcccc
Q 045210 674 NRFSGKIP-VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFH-GFFPPELCGLASLKILDLSSNNLTG 751 (873)
Q Consensus 674 n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~ 751 (873)
|......+ ..+..+++++.+++++|.+.+..|..+. .++.++.|++++|++. +.+|..+..+++|+.|||++|++++
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred ccccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 88776554 4577888999999999999876666555 4889999999998754 4577888899999999999999998
Q ss_pred ccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCc
Q 045210 752 VIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS 831 (873)
Q Consensus 752 ~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 831 (873)
.+|..|+++++| +.|+|++|++++..|..++++++|++|+|++|+++
T Consensus 509 l~~~~f~~l~~L---------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 509 LSPTAFNSLSSL---------------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555 (635)
T ss_dssp ECTTTTTTCTTC---------------------------------CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred cChHHHcCCCCC---------------------------------CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC
Confidence 888888877776 78999999999888888999999999999999999
Q ss_pred ccCCccccCC-CCCCeEeccCCccccc
Q 045210 832 GRIPVNMGAM-KSVEALDFSSNRLQGE 857 (873)
Q Consensus 832 ~~ip~~l~~l-~~L~~L~ls~N~l~g~ 857 (873)
+..|..+..+ ++|+.|++++|+++..
T Consensus 556 ~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 556 TSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp BCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999998887 6899999999998753
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4e-42 Score=406.40 Aligned_cols=517 Identities=21% Similarity=0.202 Sum_probs=340.5
Q ss_pred CCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCc
Q 045210 121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK 200 (873)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~ 200 (873)
+++++|||++|+++.. .+..|+++++|++|+|++|.+++..|.+|+++++|++|+|++|+++.++..
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~------------ 118 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG------------ 118 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG------------
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH------------
Confidence 3678888888888864 456788888888888888888877777788888888888888877766554
Q ss_pred EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEcc
Q 045210 201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS 280 (873)
Q Consensus 201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 280 (873)
.+.++++|++|++++|+++++.+..|+++++|++|++++|.+.....+..+..+++|++|+++
T Consensus 119 -----------------~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 119 -----------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp -----------------GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred -----------------HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 234555666666666666666666777777778888877777645566677777777777777
Q ss_pred CCcCCCCChhhhcCCCCC----CEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCc-cCcccccCCCCCCEEeCCCCc
Q 045210 281 TNNFQGAVPDAIQNSTSL----QHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQG-SIPGSLGNLTSIKSLDLSFNR 355 (873)
Q Consensus 281 ~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~ 355 (873)
+|++++..+..+..+.++ ..++++.|.+....+. ......++.+++.+|.... ..+..+..+..++...+..+.
T Consensus 182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 260 (635)
T 4g8a_A 182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 260 (635)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CccccccccccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccc
Confidence 777776666665544433 3567777776643333 3333455666666665442 223344555555555443221
Q ss_pred C------CCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCC
Q 045210 356 L------ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLS 429 (873)
Q Consensus 356 l------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 429 (873)
. .......+.....+....+..+.... .....+..+..+.+++.+++.
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~--------------------------~~~~~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 261 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY--------------------------YLDGIIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp CTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS--------------------------CEEECTTTTGGGTTCSEEEEE
T ss_pred cccccccccccccccccccchhhhhhhhhhhcc--------------------------cccchhhhhhhhccccccccc
Confidence 1 11112222222222222222211110 001122234445666677766
Q ss_pred CCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCC
Q 045210 430 FNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGP 509 (873)
Q Consensus 430 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (873)
++.+.... .+.....++.|++.+|.+.+. +. ..+..++.+.+..|....
T Consensus 315 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~~---~~l~~L~~l~l~~n~~~~------------------------- 363 (635)
T 4g8a_A 315 SVTIERVK--DFSYNFGWQHLELVNCKFGQF-PT---LKLKSLKRLTFTSNKGGN------------------------- 363 (635)
T ss_dssp SCEEEECG--GGGSCCCCSEEEEESCEESSC-CC---CBCTTCCEEEEESCCSCC-------------------------
T ss_pred cccccccc--ccccchhhhhhhcccccccCc-Cc---ccchhhhhcccccccCCC-------------------------
Confidence 66655322 244556677777777766532 21 234445555554443221
Q ss_pred CcchhhhcCCcccEEEccCCCCCcc--cChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCC
Q 045210 510 QFPQWLLSQNHLIYLDLSNSSISDT--IPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIP 587 (873)
Q Consensus 510 ~~~~~l~~~~~L~~L~l~~n~l~~~--~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 587 (873)
+.....+++|+.+++++|.+... .+. ....+.+|+++++..+......+.+..+++|+.+++.++......+
T Consensus 364 --~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--- 437 (635)
T 4g8a_A 364 --AFSEVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE--- 437 (635)
T ss_dssp --BCCCCBCTTCCEEECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS---
T ss_pred --Ccccccccccccchhhcccccccccccc-chhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc---
Confidence 11122455667777777666432 222 2334567788888877776665566666666666666655443222
Q ss_pred CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCc-cCCcccccCCCCc
Q 045210 588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFT-GNLPTSLGTLSSL 666 (873)
Q Consensus 588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L 666 (873)
.. .+..+++++.++++.|.+.+..+..+..+++|+.|++++|++. +..|..+..+++|
T Consensus 438 ------------------~~---~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 438 ------------------FS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp ------------------SC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred ------------------cc---ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 11 2344788899999999999888889999999999999999854 4577889999999
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCC-CCCCEEeCC
Q 045210 667 QILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGL-ASLKILDLS 745 (873)
Q Consensus 667 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls 745 (873)
++|+|++|++++..|..|.++++|++|+|++|++++..|..+. .+++|++|++++|++++..|..+..+ ++|+.|+++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh-CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 9999999999999999999999999999999999965555554 59999999999999999999999988 789999999
Q ss_pred CCcccccc
Q 045210 746 SNNLTGVI 753 (873)
Q Consensus 746 ~N~l~~~i 753 (873)
+|++++..
T Consensus 576 ~Np~~C~C 583 (635)
T 4g8a_A 576 QNDFACTC 583 (635)
T ss_dssp TCCBCCSG
T ss_pred CCCCcccC
Confidence 99998654
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=400.12 Aligned_cols=455 Identities=19% Similarity=0.209 Sum_probs=313.2
Q ss_pred EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEcc
Q 045210 201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS 280 (873)
Q Consensus 201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 280 (873)
++++++|.++.++.. +. ++|++|++++|.++++.+..|.++++|++|++++|.++ +..+..+.++++|++|+++
T Consensus 4 ~l~ls~n~l~~ip~~---~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKD---LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp EEECTTSCCSSCCCS---CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECC
T ss_pred eEecCCCCccccccc---cc--ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecC
Confidence 444555555444321 11 56777777777777776677777777777777777775 4446667777777777777
Q ss_pred CCcCCCCChhhhcCCCCCCEEECCCCCCCC-CCchhhhcCCCcCEEEccCCcCCccCcccccCCCCC--CEEeCCCCcC-
Q 045210 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSS-SVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSI--KSLDLSFNRL- 356 (873)
Q Consensus 281 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l- 356 (873)
+|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..++.+++| ++|++++|.+
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 77776 45544 67777777777777765 356677777777777777777664 245556666 7777777766
Q ss_pred -CCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccc-cccCCCCCCCEEeCCCCc--
Q 045210 357 -ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLT-NQIGNFKNLDSLDLSFNN-- 432 (873)
Q Consensus 357 -~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-- 432 (873)
.+..|..+..+.. ....+++++|.+.+.++ ..+..+++|+.+++++|.
T Consensus 152 ~~~~~~~~l~~l~~----------------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 203 (520)
T 2z7x_B 152 GEKEDPEGLQDFNT----------------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203 (520)
T ss_dssp TSSCCTTTTTTCCE----------------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred cccccccccccccc----------------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence 5555555544431 13345666666665443 345678888888888876
Q ss_pred -----cCccccccccCCCCCCEEEccCccCCcccChhhhh--cccccceEEcCCCeeeccccCCCCCCCccccEEecccc
Q 045210 433 -----ISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFA--NLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSC 505 (873)
Q Consensus 433 -----l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 505 (873)
+.+.+| .++.+++|+.|++++|.+.+........ ..++|+.+++++|.
T Consensus 204 ~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~------------------------ 258 (520)
T 2z7x_B 204 NKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK------------------------ 258 (520)
T ss_dssp TTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE------------------------
T ss_pred cccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc------------------------
Confidence 565555 6778888888888888776432221111 12344444444443
Q ss_pred ccCCCcchhh-----hcCCcccEEEccCCCCCcccCh-hHHhcC--CCCcEEeccCcccccccCCccccCCCCeEeCCCC
Q 045210 506 FIGPQFPQWL-----LSQNHLIYLDLSNSSISDTIPD-RLVKSL--SQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSN 577 (873)
Q Consensus 506 ~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~p~-~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 577 (873)
+.+.+|.++ ..+++|+.+++++|.+ .+|. .+...+ .+|+.|++++|.+.... ....
T Consensus 259 -l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~------------ 322 (520)
T 2z7x_B 259 -LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSK------------ 322 (520)
T ss_dssp -EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSS------------
T ss_pred -ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-chhh------------
Confidence 333455555 6677777777777777 5553 322221 35677777766654321 1123
Q ss_pred CCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccC--CCChhhhccccCcEEEcCCCcCccC
Q 045210 578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG--EIPDCWMNWSFLFFLHLGENDFTGN 655 (873)
Q Consensus 578 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~ 655 (873)
+++|++|++++|.+++.+|.. +..+++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 323 ---------l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 323 ---------ISPFLHLDFSNNLLTDTVFEN----CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp ---------CCCCCEEECCSSCCCTTTTTT----CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred ---------CCcccEEEeECCccChhhhhh----hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 445566666666666555543 4458889999999999986 5667889999999999999999986
Q ss_pred Cccc-ccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcc-c
Q 045210 656 LPTS-LGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPE-L 733 (873)
Q Consensus 656 ~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~-l 733 (873)
+|.. +..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|.+++. +++|++|++++|++++ +|.. +
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~-l~~L~~L~L~~N~l~~-l~~~~~ 464 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK-LEALQELNVASNQLKS-VPDGIF 464 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCCC-CCTTTT
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc-CCCCCEEECCCCcCCc-cCHHHh
Confidence 7754 78899999999999999988887765 79999999999999 89999884 9999999999999994 5655 8
Q ss_pred CCCCCCCEEeCCCCccccccC
Q 045210 734 CGLASLKILDLSSNNLTGVIP 754 (873)
Q Consensus 734 ~~l~~L~~L~Ls~N~l~~~ip 754 (873)
..+++|+.|++++|++++..+
T Consensus 465 ~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred ccCCcccEEECcCCCCcccCC
Confidence 899999999999999998765
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.1e-43 Score=413.46 Aligned_cols=393 Identities=18% Similarity=0.237 Sum_probs=235.9
Q ss_pred CCCCCCCchhhhcCCCcCEEEccCCcCCc-----------------cCccccc--CCCCCCEEeCCCCcCCCcchhhhhc
Q 045210 306 NHFSSSVPDWFNKFIDLEYLSLSYNELQG-----------------SIPGSLG--NLTSIKSLDLSFNRLESKIPRAFKR 366 (873)
Q Consensus 306 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~ 366 (873)
|.+++ +|..++++++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 67776 88889999999999999999987 3888887 9999999999999999999999999
Q ss_pred CCCCCEEEccCCc-Ccc-hhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccc--ccc
Q 045210 367 LRHLRSVNLSGNK-LSQ-EISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPL--SLG 442 (873)
Q Consensus 367 l~~L~~L~L~~n~-l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~ 442 (873)
+++|+.|++++|+ +++ .+|..+..+. ..+..+++|++|++++|+++ .+|. .++
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~----------------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLA----------------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHH----------------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhh----------------------hcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 9999999999998 887 6665544322 01233445555555555555 4454 455
Q ss_pred CCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCc-c
Q 045210 443 QLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNH-L 521 (873)
Q Consensus 443 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L 521 (873)
++++|++|++++|+++ .+| .+..+++|+.|++++|.+. .+|.++..+++ |
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~--------------------------~lp~~l~~l~~~L 621 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE--------------------------EIPEDFCAFTDQV 621 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS--------------------------CCCTTSCEECTTC
T ss_pred cCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc--------------------------cchHHHhhccccC
Confidence 5555555555555544 333 2333333333333222211 11222222233 3
Q ss_pred cEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCcccc--CCCCeEeCCCCCCCCCCCCCCCCCcEEEccCcc
Q 045210 522 IYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDA--AQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF 599 (873)
Q Consensus 522 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 599 (873)
+.|++++|.+. .+|. .+... ++|+.|++++|++.+.+|..+..+
T Consensus 622 ~~L~Ls~N~L~-~lp~------------------------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l--------- 667 (876)
T 4ecn_A 622 EGLGFSHNKLK-YIPN------------------------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSM--------- 667 (876)
T ss_dssp CEEECCSSCCC-SCCS------------------------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCT---------
T ss_pred CEEECcCCCCC-cCch------------------------hhhccccCCCCEEECcCCcCCCccccchhhh---------
Confidence 33333333332 2221 12111 124444444444433332211000
Q ss_pred CcCcchhhhhhhcccCCCCceEeccCCcccCCCChhh-hccccCcEEEcCCCcCccCCcccccC--------CCCccEEE
Q 045210 600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW-MNWSFLFFLHLGENDFTGNLPTSLGT--------LSSLQILH 670 (873)
Q Consensus 600 l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~p~~l~~--------l~~L~~L~ 670 (873)
....+++|+.|++++|+++ .+|..+ ..+++|+.|++++|++. .+|..+.. +++|+.|+
T Consensus 668 -----------~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 668 -----------DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp -----------TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred -----------ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEE
Confidence 0011345667777777766 444443 36677777777777776 45544332 23677777
Q ss_pred ccCCcccccCCcccc--cCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210 671 LRGNRFSGKIPVSLQ--NCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748 (873)
Q Consensus 671 L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 748 (873)
|++|+++ .+|..+. .+++|+.|+|++|++++ +|..++. +++|+.|++++|+ ++++|.
T Consensus 735 Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~-L~~L~~L~Ls~N~------------------~ls~N~ 793 (876)
T 4ecn_A 735 LRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN-SSQLKAFGIRHQR------------------DAEGNR 793 (876)
T ss_dssp CCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-CTTCCEEECCCCB------------------CTTCCB
T ss_pred CCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc-CCCCCEEECCCCC------------------Cccccc
Confidence 7777666 5666665 66677777777777664 6666654 6666666666654 456677
Q ss_pred cccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCC
Q 045210 749 LTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHN 828 (873)
Q Consensus 749 l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N 828 (873)
+.+.+|..++++++| +.|+|++|++ +.||..+. ++|+.|+|++|
T Consensus 794 l~~~ip~~l~~L~~L---------------------------------~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 794 ILRQWPTGITTCPSL---------------------------------IQLQIGSNDI-RKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp CCCCCCTTGGGCSSC---------------------------------CEEECCSSCC-CBCCSCCC--SSSCEEECCSC
T ss_pred ccccChHHHhcCCCC---------------------------------CEEECCCCCC-CccCHhhc--CCCCEEECCCC
Confidence 777777777766655 6777777777 57777655 57778888888
Q ss_pred cCcccCCccccCCCCCCeEeccCCccc
Q 045210 829 FFSGRIPVNMGAMKSVEALDFSSNRLQ 855 (873)
Q Consensus 829 ~l~~~ip~~l~~l~~L~~L~ls~N~l~ 855 (873)
++...-+..+.....+..+.+++|++.
T Consensus 838 ~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 838 PNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp TTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCccChHHccccccchheeecCCCcc
Confidence 777665666655555666667776654
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-41 Score=391.01 Aligned_cols=462 Identities=19% Similarity=0.190 Sum_probs=289.3
Q ss_pred CCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeC
Q 045210 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDL 351 (873)
Q Consensus 272 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 351 (873)
...+++++++|++++ +|..+. ++|++|++++|.+++..|..++++++|++|++++|.+++..|..|+.+++|++|++
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 344667777777663 554443 56667777777666655566666666666666666666655666666666666666
Q ss_pred CCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCC-ccccccCCCCCCCEEeCCC
Q 045210 352 SFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFG-LLTNQIGNFKNLDSLDLSF 430 (873)
Q Consensus 352 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~ 430 (873)
++|+++ .+|.. .+++ |++|++++|.+.+ .+|..++.+++|++|++++
T Consensus 108 s~N~l~-~lp~~--~l~~-----------------------------L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMAS-----------------------------LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp TTSCCC-EECSC--CCTT-----------------------------CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC
T ss_pred CCCcCC-ccCcc--cccc-----------------------------CCEEECCCCCccccCchHhhcccCcccEEecCC
Confidence 666665 23332 3333 5555555555555 2356677888888888888
Q ss_pred CccCccccccccCCCCC--CEEEccCccC--CcccChhhhhcccc-cceEEcCCCeeeccccCCCCCCCccccEEecccc
Q 045210 431 NNISGHIPLSLGQLSSL--RYLDVSTNNL--NGTLSENHFANLTK-LVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSC 505 (873)
Q Consensus 431 n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 505 (873)
|++++. .+..+++| ++|++++|.+ ++..+. .+..+.. .-.+++++|
T Consensus 156 n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n------------------------- 206 (562)
T 3a79_B 156 AKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPN------------------------- 206 (562)
T ss_dssp SBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCC-EEEECCEEEEEEEECSS-------------------------
T ss_pred CccccC---chhhhhhceeeEEEeecccccccccCcc-cccccCcceEEEEecCc-------------------------
Confidence 887753 34444444 8888888877 544443 2333220 001222222
Q ss_pred ccCCCcc-hhhhcCCcccEEEccCCCCCc-ccCh--hHHhcCCCCcEEeccCccccccc----CCccccCCCCeEeCCCC
Q 045210 506 FIGPQFP-QWLLSQNHLIYLDLSNSSISD-TIPD--RLVKSLSQINYLNLSYNQIFGQI----PDLNDAAQLETLDLSSN 577 (873)
Q Consensus 506 ~~~~~~~-~~l~~~~~L~~L~l~~n~l~~-~~p~--~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~L~~L~l~~n 577 (873)
.+.+.++ ..+..+++|+.+++++|+..- .++. ..+..+++|+.+++.++.+.+.. +.....
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~----------- 275 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP----------- 275 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT-----------
T ss_pred cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc-----------
Confidence 2222222 233445666667766664210 0000 12334455566655555544311 111112
Q ss_pred CCCCCCCCCCCCCcEEEccCccCcCcchhhhhhh-cccCCCCceEeccCCcccCCCC-hhhhcc---ccCcEEEcCCCcC
Q 045210 578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNE-MNNSMRLQVLNLGNNTLSGEIP-DCWMNW---SFLFFLHLGENDF 652 (873)
Q Consensus 578 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l---~~L~~L~l~~n~l 652 (873)
.+|++|++++|.++|.+|..+... ..+++.|+.++++.+.+ .+| ..+..+ .+|+.|++++|.+
T Consensus 276 ----------~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 276 ----------RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp ----------SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred ----------ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCc
Confidence 245555555555555554432110 12344555555555555 344 223222 5688888888877
Q ss_pred ccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecc--cCChhHHhhcccCcEEEccCCeeeeeCC
Q 045210 653 TGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVG--NIPTWIGERLSGIILLSLRANQFHGFFP 730 (873)
Q Consensus 653 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~ip~~~~~~l~~L~~L~L~~n~l~~~~p 730 (873)
.... ....+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+. .+++|+.|++++|++++.+|
T Consensus 344 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 344 IHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBSCCS
T ss_pred cccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCCccC
Confidence 5321 12577888888888888888888888888888888888888874 2233444 48888899999998888565
Q ss_pred c-ccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCccccc
Q 045210 731 P-ELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE 809 (873)
Q Consensus 731 ~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 809 (873)
. .+..+++|+.|++++|++++.+|..+. +.|+.||+++|+++ .
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----------------------------------~~L~~L~L~~N~l~-~ 464 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLP-----------------------------------PKVKVLDLHNNRIM-S 464 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCC-----------------------------------TTCSEEECCSSCCC-C
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhc-----------------------------------CcCCEEECCCCcCc-c
Confidence 5 477889999999999999887776542 23588999999998 7
Q ss_pred CChhhhcCCCCCeeeCCCCcCcccCCcc-ccCCCCCCeEeccCCcccccccc
Q 045210 810 IPSQVTNLVGLQTLKLSHNFFSGRIPVN-MGAMKSVEALDFSSNRLQGEIPK 860 (873)
Q Consensus 810 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP~ 860 (873)
+|..+..+++|++|++++|+++ .+|.. ++.+++|+.|++++|++.+..|.
T Consensus 465 ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 465 IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 8988889999999999999999 57766 88999999999999999987663
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.9e-41 Score=387.49 Aligned_cols=468 Identities=23% Similarity=0.255 Sum_probs=288.5
Q ss_pred ccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEcc
Q 045210 249 LVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLS 328 (873)
Q Consensus 249 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 328 (873)
.+++++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|+.+++|++|+++
T Consensus 33 ~~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 356666666654 2444332 567777777777776666677777777777777777776667777777777777777
Q ss_pred CCcCCccCcccccCCCCCCEEeCCCCcCCCc-chhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCc
Q 045210 329 YNELQGSIPGSLGNLTSIKSLDLSFNRLESK-IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNN 407 (873)
Q Consensus 329 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 407 (873)
+|.++ .+|.. .+++|++|++++|++++. +|..++++++|++|++++|.+++.... .+... .|+.|++++|
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~L---~L~~L~L~~n 179 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL---PVAHL---HLSCILLDLV 179 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTG---GGTTS---CEEEEEEEES
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchh---hhhhc---eeeEEEeecc
Confidence 77776 45554 677777777777777653 356777777777777777766542111 11110 1366666666
Q ss_pred cc--CCccccccCCCC--CCCEEeCCCCccCccccc-cccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCee
Q 045210 408 TL--FGLLTNQIGNFK--NLDSLDLSFNNISGHIPL-SLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSL 482 (873)
Q Consensus 408 ~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~ 482 (873)
.+ ++..|..+..+. .+ .+++++|.+.+.++. .+..+++|+.+++++|......
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--------------------- 237 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR--------------------- 237 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH---------------------
T ss_pred cccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccch---------------------
Confidence 66 555555554433 12 335555555443332 2344555555555554311000
Q ss_pred eccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHH--hcCCCCcEEeccCccccccc
Q 045210 483 VLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLV--KSLSQINYLNLSYNQIFGQI 560 (873)
Q Consensus 483 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~l~~n~~~~~~ 560 (873)
.......+..+++|+.++++++.+.+....... ...++|++|++++|.+.+.+
T Consensus 238 -------------------------l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i 292 (562)
T 3a79_B 238 -------------------------LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292 (562)
T ss_dssp -------------------------HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC
T ss_pred -------------------------HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc
Confidence 000112234444555555554444332111111 11237777777777777666
Q ss_pred C-Cccc--cCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhh
Q 045210 561 P-DLND--AAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM 637 (873)
Q Consensus 561 ~-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~ 637 (873)
| .+.. .++++ .|+.+++..+.+ .+|......+....+|++|++++|.+.... ...
T Consensus 293 p~~~~~~~~~~L~------------------~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~ 350 (562)
T 3a79_B 293 DREEFTYSETALK------------------SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPP 350 (562)
T ss_dssp CCCCCCCCSCSCC------------------EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCS
T ss_pred cchhhhcccccch------------------heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--Ccc
Confidence 5 2211 11222 222233333333 233221111212356788888888775322 125
Q ss_pred ccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccc--cCCcccccCCCCcEEEccCCeecccCChhHHhhcccC
Q 045210 638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSG--KIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGI 715 (873)
Q Consensus 638 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L 715 (873)
.+++|++|++++|++++.+|..++++++|++|++++|++++ .+|..+..+++|++|++++|++++.+|...+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 67788888888888887778888888888888888888876 3346677888888888888888876777655557888
Q ss_pred cEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCcc
Q 045210 716 ILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYY 795 (873)
Q Consensus 716 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (873)
+.|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L-------------------------------- 475 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL-------------------------------- 475 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC--------------------------------
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC--------------------------------
Confidence 8888888888877766554 68888888888888 677766655554
Q ss_pred ceEEECCCCcccccCChh-hhcCCCCCeeeCCCCcCcccCC
Q 045210 796 LKVLDLSANYFSGEIPSQ-VTNLVGLQTLKLSHNFFSGRIP 835 (873)
Q Consensus 796 L~~L~ls~n~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip 835 (873)
+.||+++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 476 -~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 476 -QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp -SEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred -CEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 78888888888 57766 8888888888888888887655
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-39 Score=347.45 Aligned_cols=277 Identities=31% Similarity=0.503 Sum_probs=179.9
Q ss_pred cCCHHHHHHHHHhhhcCCCCCCCcCCCccCCCCCCcc--ceeeEecCCC--CcEEEEecCCCCCCCCCchhhhhccccce
Q 045210 34 GCIESEREALLSFKQDLEDPSNRLASWNNIGVGDCCK--WYGVVCDNIT--GHVLELRLRNPSRDDGSPAEYEAYERSKI 109 (873)
Q Consensus 34 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~~~ 109 (873)
.|.++|++||++||+++.+|. .+.+|. . +.+||. |.||+|+... ++|+.+++++. .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~-~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~----------------~l 62 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL-P-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL----------------NL 62 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC-T-TSCTTTTCSTTEEECCSSSCCCEEEEEEECC----------------CC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC-C-CCCCCcCCCcceEeCCCCCCceEEEEECCCC----------------Cc
Confidence 599999999999999998886 789997 3 678998 9999998655 89999999986 77
Q ss_pred ee--ecccCccCCCCCCeecCCC-CCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCc
Q 045210 110 VG--KINPSLLGLKHLIHLDLSY-NDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLY 186 (873)
Q Consensus 110 ~g--~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~ 186 (873)
.| .+|+.++++++|++|++++ |.+.+. +|..++++++|++|++++|.+++.+|..++++++|++|++++|.++...
T Consensus 63 ~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 141 (313)
T 1ogq_A 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141 (313)
T ss_dssp SSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred cCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC
Confidence 78 8899999999999999995 888876 8999999999999999999999889998888888888888888765322
Q ss_pred cCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCC-CccEEEcCCCCCCCCchh
Q 045210 187 VEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFS-SLVTLDISDNQFADSSIV 265 (873)
Q Consensus 187 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~ 265 (873)
+. .+..+++|++|++++|.+++..|..+.+++ +|++|++++|.+. +.++
T Consensus 142 p~-----------------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-~~~~ 191 (313)
T 1ogq_A 142 PP-----------------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKIP 191 (313)
T ss_dssp CG-----------------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-EECC
T ss_pred Ch-----------------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-ccCC
Confidence 11 223334444444444444444444444444 4444444444443 3334
Q ss_pred HhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCC
Q 045210 266 NQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTS 345 (873)
Q Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 345 (873)
..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..++.+++
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 4444443 44444444444444444444444444444444444433332 344444444444444444444444444444
Q ss_pred CCEEeCCCCcCCCcchh
Q 045210 346 IKSLDLSFNRLESKIPR 362 (873)
Q Consensus 346 L~~L~L~~n~l~~~~~~ 362 (873)
|++|++++|++++.+|.
T Consensus 270 L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCEEECCSSEEEEECCC
T ss_pred CCEEECcCCcccccCCC
Confidence 44444444444444433
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-38 Score=353.75 Aligned_cols=155 Identities=25% Similarity=0.188 Sum_probs=61.6
Q ss_pred CCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEE
Q 045210 295 STSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVN 374 (873)
Q Consensus 295 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 374 (873)
.++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+++|+.+++.+|. ..++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEEE
Confidence 35566666666666 4666666666666666666666666666666666554332222211 02333444
Q ss_pred ccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccC
Q 045210 375 LSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVST 454 (873)
Q Consensus 375 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 454 (873)
+++|.+++.+. .. +.|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++
T Consensus 78 l~~~~l~~lp~--------~~-~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~ 140 (454)
T 1jl5_A 78 LNNLGLSSLPE--------LP-PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSN 140 (454)
T ss_dssp CTTSCCSCCCS--------CC-TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCS
T ss_pred ecCCccccCCC--------Cc-CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcC
Confidence 44443333111 00 115555555555554 3321 2556666666665553 2211 14566666666
Q ss_pred ccCCcccChhhhhcccccceEEcCCCe
Q 045210 455 NNLNGTLSENHFANLTKLVGFDASGNS 481 (873)
Q Consensus 455 n~l~~~~~~~~~~~l~~L~~L~l~~n~ 481 (873)
|++++ +| .+.++++|+.+++++|.
T Consensus 141 n~l~~-lp--~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 141 NQLEK-LP--ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp SCCSS-CC--CCTTCTTCCEEECCSSC
T ss_pred CCCCC-Cc--ccCCCCCCCEEECCCCc
Confidence 65553 43 24444444444444443
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4e-38 Score=351.87 Aligned_cols=425 Identities=22% Similarity=0.290 Sum_probs=179.8
Q ss_pred CCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEE
Q 045210 246 FSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYL 325 (873)
Q Consensus 246 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 325 (873)
.+.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|+.+++.+|. ..++++|
T Consensus 10 ~~~L~~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEE
T ss_pred cccchhhhcccCch--hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEE
Confidence 46777777777777 5677777777777777777777777777777766665333332221 0234555
Q ss_pred EccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEcc
Q 045210 326 SLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLS 405 (873)
Q Consensus 326 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~ 405 (873)
++++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|.+++... .. +.|++|+++
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~--------~~-~~L~~L~L~ 139 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD--------LP-PLLEYLGVS 139 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS--------CC-TTCCEEECC
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC--------CC-CCCCEEECc
Confidence 555555553 2221 2455555555555554 3321 2445555555554443211 00 126666666
Q ss_pred CcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeecc
Q 045210 406 NNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLK 485 (873)
Q Consensus 406 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 485 (873)
+|.+++ +| .++.+++|++|++++|++++ +|..+ ++|++|++++|++++ ++ .+.++++|+.+++++|
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N----- 205 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNN----- 205 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSS-----
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCC-----
Confidence 666665 44 36666667777776666663 44332 366666666666653 33 2444444444444444
Q ss_pred ccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccc
Q 045210 486 VVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLND 565 (873)
Q Consensus 486 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 565 (873)
++.+ +|.. .++|++|++++|.+. .+|.+..
T Consensus 206 --------------------------------------------~l~~-l~~~----~~~L~~L~l~~n~l~-~lp~~~~ 235 (454)
T 1jl5_A 206 --------------------------------------------SLKK-LPDL----PLSLESIVAGNNILE-ELPELQN 235 (454)
T ss_dssp --------------------------------------------CCSS-CCCC----CTTCCEEECCSSCCS-SCCCCTT
T ss_pred --------------------------------------------cCCc-CCCC----cCcccEEECcCCcCC-cccccCC
Confidence 3332 2211 135555555555555 3444555
Q ss_pred cCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEE
Q 045210 566 AAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFL 645 (873)
Q Consensus 566 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 645 (873)
+++|++|++++|++.+ +|..+++|++|++++|.+++ +|.. .++|++|++++|++++. |.. .++|+.|
T Consensus 236 l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~-l~~~-------~~~L~~L~ls~N~l~~l-~~~---~~~L~~L 302 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTD-LPEL-------PQSLTFLDVSENIFSGL-SEL---PPNLYYL 302 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSC-CCCC-------CTTCCEEECCSSCCSEE-SCC---CTTCCEE
T ss_pred CCCCCEEECCCCcCCc-ccccccccCEEECCCCcccc-cCcc-------cCcCCEEECcCCccCcc-cCc---CCcCCEE
Confidence 6666666666666554 33344556666666665554 2221 24556666666655541 110 1455566
Q ss_pred EcCCCcCccCCcccccCC-CCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCe
Q 045210 646 HLGENDFTGNLPTSLGTL-SSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQ 724 (873)
Q Consensus 646 ~l~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~ 724 (873)
++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|+
T Consensus 303 ~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 303 NASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNP 368 (454)
T ss_dssp ECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSC
T ss_pred ECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc----hhhhccEEECCCCC
Confidence 666665553 22 12 355666666666553 3432 355666666666655 4554 14555566666655
Q ss_pred eee--eCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECC
Q 045210 725 FHG--FFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLS 802 (873)
Q Consensus 725 l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls 802 (873)
+++ .+|..+.. ++.|.+.|.+|.. +++|+.||++
T Consensus 369 l~~l~~ip~~l~~--------L~~n~~~~~i~~~------------------------------------~~~L~~L~ls 404 (454)
T 1jl5_A 369 LREFPDIPESVED--------LRMNSHLAEVPEL------------------------------------PQNLKQLHVE 404 (454)
T ss_dssp CSSCCCCCTTCCE--------EECCC------------------------------------------------------
T ss_pred CCcCCCChHHHHh--------hhhcccccccccc------------------------------------cCcCCEEECC
Confidence 555 44443321 2234455555432 2345788888
Q ss_pred CCcccc--cCChhhhcCCCCCeeeCCCCcCcccCCccccCC
Q 045210 803 ANYFSG--EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM 841 (873)
Q Consensus 803 ~n~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 841 (873)
+|++++ .+|.+ ++.|.+.+|.+.+.+|.+....
T Consensus 405 ~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 405 TNPLREFPDIPES------VEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp -----------------------------------------
T ss_pred CCcCCccccchhh------HhheeCcCcccCCccccCHHHh
Confidence 888887 67754 4556788888888877665544
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.8e-37 Score=346.86 Aligned_cols=376 Identities=19% Similarity=0.222 Sum_probs=235.5
Q ss_pred CCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCC-chhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEe
Q 045210 272 VNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSV-PDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLD 350 (873)
Q Consensus 272 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 350 (873)
++|++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34555555555555444555555555555555555544332 33445555555555555555544444555555555555
Q ss_pred CCCCcCCCcchhh--hhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccc-cCCCCCCCEEe
Q 045210 351 LSFNRLESKIPRA--FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQ-IGNFKNLDSLD 427 (873)
Q Consensus 351 L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~ 427 (873)
+++|.+++..+.. ++.+++ |++|++++|.+.+..|.. +..+++|++|+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~-----------------------------L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTS-----------------------------LEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTT-----------------------------CCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCCccccCcccccCccc-----------------------------CCEEECCCCccCccCcccccCCCCcccEEe
Confidence 5555544433222 333332 444444444444443333 45556666666
Q ss_pred CCCCccCccccccccCC--CCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEecccc
Q 045210 428 LSFNNISGHIPLSLGQL--SSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSC 505 (873)
Q Consensus 428 L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 505 (873)
+++|++++..+..+..+ .+|+.|++++|.+.+..+. .+.
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~-~~~-------------------------------------- 201 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY-WLG-------------------------------------- 201 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT-CTT--------------------------------------
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchh-hcc--------------------------------------
Confidence 66666655555554443 4555555555554421111 000
Q ss_pred ccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcC--CCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCC
Q 045210 506 FIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSL--SQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPL 583 (873)
Q Consensus 506 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 583 (873)
......+..+++|++|++++|++.+..|..+.... ++|+.|++++|...+......
T Consensus 202 ---~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------- 259 (455)
T 3v47_A 202 ---WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT------------------- 259 (455)
T ss_dssp ---HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC-------------------
T ss_pred ---ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh-------------------
Confidence 00011123345677777777777766666555432 456666666665443211111
Q ss_pred CCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCC
Q 045210 584 PLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTL 663 (873)
Q Consensus 584 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 663 (873)
.+.+..+..+.. ...++|+.|++++|.+++..|..+..+++|++|++++|++.+..|..+.++
T Consensus 260 ---------------~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 322 (455)
T 3v47_A 260 ---------------NFKDPDNFTFKG--LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322 (455)
T ss_dssp ---------------SSCCCCTTTTGG--GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ---------------hhccCccccccc--ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc
Confidence 111111111110 014678999999999998888999999999999999999998888899999
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEe
Q 045210 664 SSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILD 743 (873)
Q Consensus 664 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 743 (873)
++|++|++++|++++..|..+..+++|++|++++|++++..|..+.. +++|++|++++|++++..+..+..+++|+.|+
T Consensus 323 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc-cccccEEECCCCccccCCHhHhccCCcccEEE
Confidence 99999999999999888899999999999999999999777877775 99999999999999987777788999999999
Q ss_pred CCCCccccccCh
Q 045210 744 LSSNNLTGVIPR 755 (873)
Q Consensus 744 Ls~N~l~~~ip~ 755 (873)
+++|++++.+|.
T Consensus 402 l~~N~l~~~~~~ 413 (455)
T 3v47_A 402 LHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCBCCCTTT
T ss_pred ccCCCcccCCCc
Confidence 999999999883
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-36 Score=343.24 Aligned_cols=371 Identities=20% Similarity=0.273 Sum_probs=200.9
Q ss_pred CCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEE
Q 045210 421 KNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAI 500 (873)
Q Consensus 421 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 500 (873)
++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...|.++++|++|++++|.+... .+..+....+|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCEE
Confidence 34445555555444444444444455555555554444444433444444444444444433211 11111111222222
Q ss_pred eccccccCCCcch--hhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCC
Q 045210 501 GLSSCFIGPQFPQ--WLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSN 577 (873)
Q Consensus 501 ~l~~~~~~~~~~~--~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n 577 (873)
++++|.+.+..+. ++..+++|++|++++|.+.+..|..++..+++|++|++++|.+.+..+ .+..+.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---------- 178 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ---------- 178 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT----------
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc----------
Confidence 2222222222222 244555555555555555554454444455555555555555554444 222220
Q ss_pred CCCCCCCCCCCCCcEEEccCccCcCcchhhh----hhhcccCCCCceEeccCCcccCCCChhhhcc---ccCcEEEcCCC
Q 045210 578 SLSGPLPLIPSSLTTLDLSSNFLSGTLSRFL----CNEMNNSMRLQVLNLGNNTLSGEIPDCWMNW---SFLFFLHLGEN 650 (873)
Q Consensus 578 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~l~~n 650 (873)
..+++.+++++|.+.+..+..+ +..+..+++|++|++++|++++..|..+... ++|+.|++++|
T Consensus 179 ---------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 179 ---------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp ---------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ---------cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 1233444444444433222111 1112234556666666666665555555443 55666666666
Q ss_pred cCccCCcccccCCCCccEEEccCCcccccCCcccc--cCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeee
Q 045210 651 DFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQ--NCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF 728 (873)
Q Consensus 651 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 728 (873)
...+... ..+.+.+..+..+. ..++|++|++++|.+++.+|..+.. +++|+.|++++|++.+.
T Consensus 250 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 250 YNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINKI 314 (455)
T ss_dssp TTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEE
T ss_pred ccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhccc-CCCCCEEECCCCccccc
Confidence 5443211 01111111112222 2356777777777777666666654 77777777777777777
Q ss_pred CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210 729 FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG 808 (873)
Q Consensus 729 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 808 (873)
.|..+..+++|+.|++++|.+++..|..++.+++| +.||+++|++++
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------~~L~Ls~N~l~~ 361 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL---------------------------------EVLDLSYNHIRA 361 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC---------------------------------CEEECCSSCCCE
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccC---------------------------------CEEECCCCcccc
Confidence 77777777888888888888776667666665554 678888888877
Q ss_pred cCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccc
Q 045210 809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIP 859 (873)
Q Consensus 809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 859 (873)
..|..++.+++|++|++++|++++..+..++.+++|+.|++++|++++.+|
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 777778888888888888888886655666778888888888888887776
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.9e-35 Score=328.97 Aligned_cols=90 Identities=13% Similarity=0.087 Sum_probs=51.9
Q ss_pred CCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEc
Q 045210 616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI 695 (873)
Q Consensus 616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 695 (873)
++|++|++++|++++. + +..+++|+.|++++|++++ ++.|+.|++++|.+.|. ..+..|+.+++
T Consensus 318 ~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l 381 (457)
T 3bz5_A 318 PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETL 381 (457)
T ss_dssp TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcccc
Confidence 4566666666666652 2 5666666666666666664 23455556666666654 23445666677
Q ss_pred cCCeecccCChhHHhhcccCcEEEcc
Q 045210 696 SENEFVGNIPTWIGERLSGIILLSLR 721 (873)
Q Consensus 696 s~n~l~~~ip~~~~~~l~~L~~L~L~ 721 (873)
++|+++|.+|..+.....++....-.
T Consensus 382 ~~N~l~g~ip~~~~~~~~~~~~~~~~ 407 (457)
T 3bz5_A 382 TNNSLTIAVSPDLLDQFGNPMNIEPG 407 (457)
T ss_dssp BTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred ccCcEEEEcChhHhcccCceeeccCC
Confidence 77777777766654433444443333
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.8e-35 Score=325.53 Aligned_cols=273 Identities=22% Similarity=0.241 Sum_probs=201.5
Q ss_pred eeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCc
Q 045210 110 VGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVED 189 (873)
Q Consensus 110 ~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~ 189 (873)
.+..+.+++++++|++|++++|.+++ +| .++.+++|++|++++|.+++. | ++.+++|++|++++|.++.++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD--- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred CcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---
Confidence 34445578889999999999999987 45 688999999999999998874 4 889999999999999988763
Q ss_pred cccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhc
Q 045210 190 FGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVL 269 (873)
Q Consensus 190 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 269 (873)
+.++++|++|++++|.+++++ +..+++|++|++++|+++++ .++++++|++|++++|... +.+ .+.
T Consensus 102 ---~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~-~~~--~~~ 167 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI-TKL--DVT 167 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCC-CCC--CCT
T ss_pred ---cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcc-ccc--ccc
Confidence 578889999999999888763 57788888888888888886 2778888888888888543 333 466
Q ss_pred CCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEE
Q 045210 270 GLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSL 349 (873)
Q Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 349 (873)
.+++|++|++++|++++ +| +..+++|++|++++|.+++. .++.+++|++|++++|++++ +| ++.+++|++|
T Consensus 168 ~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 77888888888888875 34 67778888888888887754 26777888888888888875 45 6777888888
Q ss_pred eCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCC
Q 045210 350 DLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLS 429 (873)
Q Consensus 350 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 429 (873)
++++|++++.. ++.+++|+.|++++|. |+.|++++|.+.+.+| ++.+++|+.|+++
T Consensus 239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n~-------------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 239 DCSVNPLTELD---VSTLSKLTTLHCIQTD-------------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVT 294 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCCEEECTTCC-------------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCT
T ss_pred EeeCCcCCCcC---HHHCCCCCEEeccCCC-------------------CCEEECCCCccCCccc--ccccccCCEEECC
Confidence 88888777643 3456666666665542 5555666665555544 3445555555555
Q ss_pred CCccCcccc
Q 045210 430 FNNISGHIP 438 (873)
Q Consensus 430 ~n~l~~~~~ 438 (873)
+|...+.+|
T Consensus 295 ~n~~l~~l~ 303 (457)
T 3bz5_A 295 HNTQLYLLD 303 (457)
T ss_dssp TCTTCCEEE
T ss_pred CCcccceec
Confidence 554443333
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-33 Score=317.29 Aligned_cols=341 Identities=26% Similarity=0.355 Sum_probs=221.8
Q ss_pred ccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcC
Q 045210 399 LESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDAS 478 (873)
Q Consensus 399 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 478 (873)
++.|+++++.+... | .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+.. . +..+++|+.|+++
T Consensus 48 l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 48 VTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT-P--LANLTNLTGLTLF 120 (466)
T ss_dssp CCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-G--GTTCTTCCEEECC
T ss_pred ccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccCh-h--hcCCCCCCEEECC
Confidence 88899988888763 3 37778899999999998885443 888889999999988887433 2 6777777777777
Q ss_pred CCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCccccc
Q 045210 479 GNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFG 558 (873)
Q Consensus 479 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~ 558 (873)
+|.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++. |.+.+
T Consensus 121 ~n~l~~--------------------------~~-~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~-~~~~~ 169 (466)
T 1o6v_A 121 NNQITD--------------------------ID-PLKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFG-NQVTD 169 (466)
T ss_dssp SSCCCC--------------------------CG-GGTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEE-ESCCC
T ss_pred CCCCCC--------------------------Ch-HHcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecC-CcccC
Confidence 765432 12 26677888888888888765 332 5667888888885 44443
Q ss_pred ccCCccccCCCCeEeCCCCCCCCCCCC-CCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhh
Q 045210 559 QIPDLNDAAQLETLDLSSNSLSGPLPL-IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWM 637 (873)
Q Consensus 559 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~ 637 (873)
. +.+..+++|++|++++|.+.+.... .+++|++|++++|.+.+..+ ++.+++|+.|++++|++.+. ..+.
T Consensus 170 ~-~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 170 L-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred c-hhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc------ccccCCCCEEECCCCCcccc--hhhh
Confidence 3 3477777888888888876643211 24566777777766665444 22356666777776666542 3456
Q ss_pred ccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcE
Q 045210 638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL 717 (873)
Q Consensus 638 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 717 (873)
.+++|+.|++++|++.+..| +..+++|+.|++++|++++..+ +..+++|+.|++++|++.+ ++. +. .+++|+.
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~-~l~~L~~ 313 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP-IS-NLKNLTY 313 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG-GG-GCTTCSE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC-chh-hc-CCCCCCE
Confidence 66666667776666665433 5666666666666666664433 5666666666666666664 332 33 3666666
Q ss_pred EEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccce
Q 045210 718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLK 797 (873)
Q Consensus 718 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 797 (873)
|++++|++++..| +..+++|+.|++++|++++. +.+.++++ |+
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~---------------------------------L~ 356 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN---------------------------------IN 356 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT---------------------------------CC
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC---------------------------------CC
Confidence 6666666665544 55666666666666666643 23333333 36
Q ss_pred EEECCCCcccccCChhhhcCCCCCeeeCCCCcCcc
Q 045210 798 VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSG 832 (873)
Q Consensus 798 ~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 832 (873)
.|++++|++++.+| +.++++|+.|++++|.+++
T Consensus 357 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred EEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 66666666666555 6666666666666666665
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.8e-32 Score=307.83 Aligned_cols=344 Identities=26% Similarity=0.374 Sum_probs=287.8
Q ss_pred CcEEEEecCCCCCCCCCchhhhhccccceeeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCC
Q 045210 81 GHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVG 160 (873)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 160 (873)
.+++.+++.+. .+. .++ .+..+++|++|++++|.+++. +. ++.+++|++|++++|.+.+
T Consensus 46 ~~l~~L~l~~~----------------~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~ 104 (466)
T 1o6v_A 46 DQVTTLQADRL----------------GIK-SID-GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIAD 104 (466)
T ss_dssp HTCCEEECCSS----------------CCC-CCT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC
T ss_pred ccccEEecCCC----------------CCc-cCc-chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCcccc
Confidence 36778888774 222 233 478899999999999999874 44 8999999999999999887
Q ss_pred CCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCc
Q 045210 161 IIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISP 240 (873)
Q Consensus 161 ~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 240 (873)
..| ++++++|++|++++|.++.++. +.++++|++|++++|.+...+ .+..+++|++|+++ +.+.+..+
T Consensus 105 ~~~--~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~-~~~~~~~~ 172 (466)
T 1o6v_A 105 ITP--LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFG-NQVTDLKP 172 (466)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEE-ESCCCCGG
T ss_pred Chh--hcCCCCCCEEECCCCCCCCChH-----HcCCCCCCEEECCCCccCCCh----hhccCCcccEeecC-CcccCchh
Confidence 655 9999999999999999988754 788999999999999988764 36889999999996 45555433
Q ss_pred cccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCC
Q 045210 241 LSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFI 320 (873)
Q Consensus 241 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 320 (873)
+.++++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+ ++.+++|++|++++|.+.+. ..+..++
T Consensus 173 --~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 243 (466)
T 1o6v_A 173 --LANLTTLERLDISSNKVSD--I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLT 243 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred --hccCCCCCEEECcCCcCCC--C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCC
Confidence 8999999999999999863 2 357889999999999999987655 77899999999999998853 4688999
Q ss_pred CcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhccccccc
Q 045210 321 DLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLE 400 (873)
Q Consensus 321 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~ 400 (873)
+|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+ +.|+
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-----~~~l--~~L~ 312 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-----ISNL--KNLT 312 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-----GGGC--TTCS
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-----hcCC--CCCC
Confidence 99999999999986554 8899999999999999987644 8889999999999999988654 2222 3399
Q ss_pred EEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCC
Q 045210 401 SLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480 (873)
Q Consensus 401 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 480 (873)
.|++++|.+++..| +..+++|++|++++|++++. ..+.++++|++|++++|++++..+ +..+++|+.+++++|
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 385 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCE
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCC
Confidence 99999999998766 77899999999999999864 468899999999999999987654 788899999999999
Q ss_pred eeec
Q 045210 481 SLVL 484 (873)
Q Consensus 481 ~~~~ 484 (873)
.+..
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 8775
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=312.01 Aligned_cols=306 Identities=22% Similarity=0.189 Sum_probs=176.1
Q ss_pred CCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCc
Q 045210 121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK 200 (873)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~ 200 (873)
+++++|+|++|.+++. .+..+..+++|++|+|++|.+++..|..|+++++|++|++++|.++.++... +.++++|+
T Consensus 32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV---FTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS---STTCTTCC
T ss_pred CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc---ccCCCCCC
Confidence 5789999999998875 5778889999999999999988888888999999999999998888776543 34555666
Q ss_pred EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEcc
Q 045210 201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLS 280 (873)
Q Consensus 201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 280 (873)
+|++++|.+.... +..+..+++|++|++++|.+.++.+..|.++++|++|++++|.++ ...+..+..+++|+.|+++
T Consensus 108 ~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 108 KLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp EEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEE
T ss_pred EEECCCCccccCC--hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCC
Confidence 6666665554442 123344555555555555555554445555555555555555443 2223334444444444444
Q ss_pred CCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcc
Q 045210 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360 (873)
Q Consensus 281 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 360 (873)
+|.+.+..+..+..++ +|++|++++|...+.+|.......+|++|++++|++++..
T Consensus 185 ~n~i~~~~~~~~~~l~------------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 185 HLNINAIRDYSFKRLY------------------------RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240 (477)
T ss_dssp SCCCCEECTTCSCSCT------------------------TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred CCcCcEeChhhcccCc------------------------ccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence 4444443333444444 4444444444443333333333334444444444444333
Q ss_pred hhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcccccc
Q 045210 361 PRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLS 440 (873)
Q Consensus 361 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 440 (873)
+..+..+++|+.|++++|.+++..+..+... +.|+.|++++|.+.+..|..+..+++|++|++++|++++..+..
T Consensus 241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHEL-----LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEECTTSCTTC-----TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred HHHhcCccccCeeECCCCcCCccChhhcccc-----ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 3344444444444444444333222211111 11555555555555555666667777777777777777655556
Q ss_pred ccCCCCCCEEEccCccCCcccC
Q 045210 441 LGQLSSLRYLDVSTNNLNGTLS 462 (873)
Q Consensus 441 l~~l~~L~~L~L~~n~l~~~~~ 462 (873)
|..+++|++|++++|++.+...
T Consensus 316 ~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp BSCGGGCCEEECCSSCEECSGG
T ss_pred cCCCcccCEEEccCCCccCccc
Confidence 6667777777777777665443
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.8e-32 Score=304.95 Aligned_cols=321 Identities=21% Similarity=0.227 Sum_probs=267.6
Q ss_pred CeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEe
Q 045210 124 IHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLD 203 (873)
Q Consensus 124 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~ 203 (873)
+.++.+++.++. +|..+. +++++|+|++|.+++..|..|.++++|++|++++|.++.+.+.
T Consensus 14 ~~v~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--------------- 74 (477)
T 2id5_A 14 RAVLCHRKRFVA--VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG--------------- 74 (477)
T ss_dssp TEEECCSCCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT---------------
T ss_pred CEEEeCCCCcCc--CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh---------------
Confidence 456666666664 566543 6899999999999988888899999999999999888766443
Q ss_pred CCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCc
Q 045210 204 LSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNN 283 (873)
Q Consensus 204 L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 283 (873)
.+..+++|++|++++|.++.+.+..|.++++|++|++++|.+. ...+..+..+++|++|++++|.
T Consensus 75 --------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 75 --------------AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp --------------TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTT
T ss_pred --------------hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCc
Confidence 2345556666666666666666667777888888888888776 4556677788888888888888
Q ss_pred CCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhh
Q 045210 284 FQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRA 363 (873)
Q Consensus 284 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 363 (873)
+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++..
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 88777888889999999999999998777778999999999999999999888888999999999999999988888877
Q ss_pred hhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccC
Q 045210 364 FKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQ 443 (873)
Q Consensus 364 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 443 (873)
.....+|++|++++|.+++.....+... +.|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+..
T Consensus 220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 220 CLYGLNLTSLSITHCNLTAVPYLAVRHL-----VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp TTTTCCCSEEEEESSCCCSCCHHHHTTC-----TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred cccCccccEEECcCCcccccCHHHhcCc-----cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 7777899999999999998766555433 23999999999999988888999999999999999999888999999
Q ss_pred CCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeec
Q 045210 444 LSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVL 484 (873)
Q Consensus 444 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 484 (873)
+++|++|++++|+++ .++...|..+++|+.+++++|.+..
T Consensus 295 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 295 LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cccCCEEECCCCcCc-eeCHhHcCCCcccCEEEccCCCccC
Confidence 999999999999998 5666688999999999999998763
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-32 Score=299.02 Aligned_cols=316 Identities=23% Similarity=0.256 Sum_probs=247.0
Q ss_pred cCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCC
Q 045210 118 LGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLS 197 (873)
Q Consensus 118 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~ 197 (873)
..++++++|++++|.++.. .+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.+++.. +.+++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~ 117 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVP 117 (390)
T ss_dssp GGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCT
T ss_pred cccCCceEEEecCCchhhC-ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH---hcCCC
Confidence 3578899999999988763 2344688999999999999998888888999999999999999988877654 57788
Q ss_pred CCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEE
Q 045210 198 LLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFL 277 (873)
Q Consensus 198 ~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 277 (873)
+|++|++++|.++.++. ..+..+++|++|++++|.+.++.+..+.++++|++|++++|.++.. .+..+++|++|
T Consensus 118 ~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L 191 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHA 191 (390)
T ss_dssp TCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEE
T ss_pred CCCEEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----cccccccccee
Confidence 99999999999887753 2357889999999999999999888999999999999999998732 35678899999
Q ss_pred EccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCC
Q 045210 278 DLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE 357 (873)
Q Consensus 278 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 357 (873)
++++|.+++ +...++|++|++++|.+... |.. ..++|++|++++|.+++. ..++.+++|++|++++|.++
T Consensus 192 ~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 192 NVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp ECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence 999998763 33456899999999988743 432 357899999999998853 57888999999999999998
Q ss_pred CcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccc
Q 045210 358 SKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHI 437 (873)
Q Consensus 358 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 437 (873)
+..|..+..+++|++|++++|++++..... ...+.|++|++++|++.+ +|..++.+++|++|++++|++++.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~- 333 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVALNLYG------QPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL- 333 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCEEECSS------SCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred CcChhHccccccCCEEECCCCcCcccCccc------CCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-
Confidence 888888999999888888888887643221 011237777777777764 444566677777777777777633
Q ss_pred cccccCCCCCCEEEccCccCCcccCh
Q 045210 438 PLSLGQLSSLRYLDVSTNNLNGTLSE 463 (873)
Q Consensus 438 ~~~l~~l~~L~~L~L~~n~l~~~~~~ 463 (873)
+ +..+++|++|++++|++.+....
T Consensus 334 ~--~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 334 K--LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred C--chhhccCCEEEcCCCCccchhHH
Confidence 3 56677777777777777654333
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-32 Score=291.33 Aligned_cols=249 Identities=28% Similarity=0.422 Sum_probs=170.0
Q ss_pred CCCCeEeCCCCCCCC--CCCCC---CCCCcEEEccC-ccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccc
Q 045210 567 AQLETLDLSSNSLSG--PLPLI---PSSLTTLDLSS-NFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWS 640 (873)
Q Consensus 567 ~~L~~L~l~~n~l~~--~~~~~---~~~L~~L~l~~-n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 640 (873)
.+++.|++++|.+.+ .+|.. +++|++|++++ |.+.+.+|..+. ++++|++|++++|++++.+|..+.+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA----KLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG----GCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh----cCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 356777777777776 55543 46677777773 666666665533 366777777777777766777777777
Q ss_pred cCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCC-CCcEEEccCCeecccCChhHHhhcccCcEEE
Q 045210 641 FLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT-ELRLFDISENEFVGNIPTWIGERLSGIILLS 719 (873)
Q Consensus 641 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 719 (873)
+|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+.. ++ |+.|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEE
Confidence 777777777777766777777777777777777777767777777666 6777777777777667766654 54 77777
Q ss_pred ccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEE
Q 045210 720 LRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVL 799 (873)
Q Consensus 720 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 799 (873)
+++|++++.+|..+..+++|+.|++++|.+++.+|. +..++ +|+.|
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~---------------------------------~L~~L 249 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK---------------------------------NLNGL 249 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT---------------------------------TCCEE
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC---------------------------------CCCEE
Confidence 777777776666677777777777777777655544 33322 34677
Q ss_pred ECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCc-ccc
Q 045210 800 DLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNR-LQG 856 (873)
Q Consensus 800 ~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g 856 (873)
|+++|+++|.+|..++++++|++|++++|+++|.+|.. +.+++|+.+++++|+ +.|
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 77777777777777777777777777777777777765 667777777777776 444
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.6e-30 Score=282.10 Aligned_cols=306 Identities=25% Similarity=0.335 Sum_probs=207.5
Q ss_pred ccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCC
Q 045210 117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHL 196 (873)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l 196 (873)
+..+++|++|+++++.+.. ++ .++.+++|++|++++|.+++..+ +.++++|++|++++|.++.++ .+.++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-----~~~~l 109 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-----ALQNL 109 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-----GGTTC
T ss_pred chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-----HHcCC
Confidence 4578899999999998875 34 37889999999999998876544 889999999999999888764 36788
Q ss_pred CCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcE
Q 045210 197 SLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVF 276 (873)
Q Consensus 197 ~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 276 (873)
++|++|++++|.+...+. +..+++|++|++++|......+. +.++++|++|++++|.+.+ ++. +..+++|++
T Consensus 110 ~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~--~~~-~~~l~~L~~ 181 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD--VTP-IANLTDLYS 181 (347)
T ss_dssp TTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCSE
T ss_pred CcCCEEECcCCcccCchh----hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC--chh-hccCCCCCE
Confidence 888888888888877642 56778888888888865554433 7778888888888887752 222 667777888
Q ss_pred EEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcC
Q 045210 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356 (873)
Q Consensus 277 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 356 (873)
|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence 8888877764332 6777778888887777775433 6777777888887777774333 77777777777777777
Q ss_pred CCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcc
Q 045210 357 ESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGH 436 (873)
Q Consensus 357 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 436 (873)
++. ..+..+++|++|++++|.+++.. . +..+ +.|+.|++++|.+.+..+..++.+++|++|++++|++++.
T Consensus 256 ~~~--~~~~~l~~L~~L~l~~n~l~~~~--~---~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 256 SDI--NAVKDLTKLKMLNVGSNQISDIS--V---LNNL--SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCCCG--G---GGGC--TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCC--hhHhcCCCcCEEEccCCccCCCh--h---hcCC--CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 653 45666777666666666665531 0 1111 1255555555555555555555555555555555555543
Q ss_pred ccccccCCCCCCEEEccCccC
Q 045210 437 IPLSLGQLSSLRYLDVSTNNL 457 (873)
Q Consensus 437 ~~~~l~~l~~L~~L~L~~n~l 457 (873)
.| +..+++|++|++++|++
T Consensus 327 ~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 327 RP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp GG--GGGCTTCSEESSSCC--
T ss_pred cC--hhhhhccceeehhhhcc
Confidence 33 44555555555555544
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.5e-31 Score=308.02 Aligned_cols=314 Identities=23% Similarity=0.257 Sum_probs=240.0
Q ss_pred CCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCC
Q 045210 119 GLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSL 198 (873)
Q Consensus 119 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~ 198 (873)
.+++++.+++++|.+... .+..++.+++|++|+|++|.+++..|..|+.+++|++|++++|.++.+++.. +.++++
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTT
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH---HcCCCC
Confidence 467888999998888764 3445788899999999999988888888899999999999999888877654 467888
Q ss_pred CcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEE
Q 045210 199 LKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLD 278 (873)
Q Consensus 199 L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 278 (873)
|++|++++|.++.++. ..+..+++|++|++++|.+.++.+..|+++++|++|++++|.++.. .+..+++|+.|+
T Consensus 125 L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~~L~ 198 (597)
T 3oja_B 125 LTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHAN 198 (597)
T ss_dssp CCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCSEEE
T ss_pred CCEEEeeCCCCCCCCH--HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----Chhhhhhhhhhh
Confidence 8999999988887653 2357888999999999999999888899999999999999988632 256678899999
Q ss_pred ccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCC
Q 045210 279 LSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLES 358 (873)
Q Consensus 279 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (873)
+++|.+++ +...++|++|++++|.+... +..+ .++|++|++++|.+++ +..++.+++|++|++++|.+++
T Consensus 199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 199 VSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp CCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred cccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 99988764 34456889999999988743 3222 3689999999998885 3678889999999999999988
Q ss_pred cchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCcccc
Q 045210 359 KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIP 438 (873)
Q Consensus 359 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 438 (873)
..|..++.+++|+.|++++|.+++.+... . ..+.|+.|++++|.+.+ +|..++.+++|++|++++|.+++. +
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----~--~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~ 340 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVALNLYG----Q--PIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K 340 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCEEECSS----S--CCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred CCHHHhcCccCCCEEECCCCCCCCCCccc----c--cCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C
Confidence 88888888888888888888877643211 0 11237777777777764 455566677777777777777643 2
Q ss_pred ccccCCCCCCEEEccCccCCcccC
Q 045210 439 LSLGQLSSLRYLDVSTNNLNGTLS 462 (873)
Q Consensus 439 ~~l~~l~~L~~L~L~~n~l~~~~~ 462 (873)
+..+++|+.|++++|++.+...
T Consensus 341 --~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 341 --LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp --CCTTCCCSEEECCSSCEEHHHH
T ss_pred --hhhcCCCCEEEeeCCCCCChhH
Confidence 5566677777777777665433
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=6.7e-32 Score=288.76 Aligned_cols=280 Identities=18% Similarity=0.202 Sum_probs=160.1
Q ss_pred ccCCHHHHHHHHHhhhcC-CCCCCCcCCCc---cCCCCCCccceeeEecC--------CCCcEEEEecCCCCCCCCCchh
Q 045210 33 AGCIESEREALLSFKQDL-EDPSNRLASWN---NIGVGDCCKWYGVVCDN--------ITGHVLELRLRNPSRDDGSPAE 100 (873)
Q Consensus 33 ~~~~~~~~~~ll~~k~~~-~~~~~~~~~W~---~~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~~~ 100 (873)
..+..+|++||++||+++ .+|.+...+|. .. ..++|.|.|+.|+. ..++|+.+++++.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~-~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n--------- 91 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-NPQIETRTGRALKATADLLEDATQPGRVALELRSV--------- 91 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTT-CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS---------
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccc-cccccccCCcchhhhHHHHhcccccceeEEEccCC---------
Confidence 456789999999999998 57777788894 23 57899999999952 2356777777664
Q ss_pred hhhccccceeeecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCC
Q 045210 101 YEAYERSKIVGKINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPN 180 (873)
Q Consensus 101 ~~~~~~~~~~g~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 180 (873)
.+. .+|+.++++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|++++|
T Consensus 92 -------~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 92 -------PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp -------CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred -------Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 333 56666666777777777777666 26666666777777777777666 55666666666776666665
Q ss_pred CCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCC
Q 045210 181 YLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFA 260 (873)
Q Consensus 181 ~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 260 (873)
.+....+..+.. . ..+..+.++++|++|++++|.++
T Consensus 161 ~~~~~~p~~~~~---------~-----------------------------------~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 161 PELTELPEPLAS---------T-----------------------------------DASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp TTCCCCCSCSEE---------E-----------------------------------C-CCCEEESTTCCEEEEEEECCC
T ss_pred CCccccChhHhh---------c-----------------------------------cchhhhccCCCCCEEECcCCCcC
Confidence 433211111100 0 00112333444444444444442
Q ss_pred CCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccc
Q 045210 261 DSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSL 340 (873)
Q Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 340 (873)
.+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+
T Consensus 197 --~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 197 --SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp --CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred --cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh
Confidence 333444444455555555554442 33345555555555555555555555555555555555555555555555555
Q ss_pred cCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 045210 341 GNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380 (873)
Q Consensus 341 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 380 (873)
+.+++|++|++++|.+.+.+|..++.+++|+.+++..+.+
T Consensus 274 ~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 5555555555555555555555555555555555554443
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.6e-29 Score=272.46 Aligned_cols=308 Identities=23% Similarity=0.363 Sum_probs=260.6
Q ss_pred cccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCcccccc
Q 045210 141 FLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITN 220 (873)
Q Consensus 141 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 220 (873)
.+..+++|++|+++++.+... | .+..+++|++|++++|.++.++. +.++++|++|++++|.++..+ .+.
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~~~----~~~ 107 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDIS----ALQ 107 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCG----GGT
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccCch----HHc
Confidence 356789999999999998754 4 48899999999999999988765 689999999999999988763 478
Q ss_pred CCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCE
Q 045210 221 SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH 300 (873)
Q Consensus 221 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 300 (873)
.+++|++|++++|.+.+..+ +.++++|++|++++|... .. +..+..+++|++|++++|.+.+..+ +..+++|++
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~-~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTC-CC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred CCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCc-cc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 89999999999999998765 899999999999999654 23 3448899999999999999885544 889999999
Q ss_pred EECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 045210 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380 (873)
Q Consensus 301 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 380 (873)
|++++|.+.+..+ +..+++|+++++++|.+.+..+ ++.+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence 9999999985433 8899999999999999986544 8899999999999999987644 88999999999999999
Q ss_pred cchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcc
Q 045210 381 SQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGT 460 (873)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 460 (873)
++.. .+..+ ++|+.|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|++|++++|++++.
T Consensus 256 ~~~~-----~~~~l--~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 256 SDIN-----AVKDL--TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CCCG-----GGTTC--TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCCh-----hHhcC--CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 8752 12222 3399999999999885 3588899999999999999988888899999999999999999865
Q ss_pred cChhhhhcccccceEEcCCCeee
Q 045210 461 LSENHFANLTKLVGFDASGNSLV 483 (873)
Q Consensus 461 ~~~~~~~~l~~L~~L~l~~n~~~ 483 (873)
.+ +..+++|+.+++++|.++
T Consensus 327 ~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 327 RP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GG---GGGCTTCSEESSSCC---
T ss_pred cC---hhhhhccceeehhhhccc
Confidence 44 778899999999998764
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.2e-33 Score=316.12 Aligned_cols=386 Identities=20% Similarity=0.171 Sum_probs=241.0
Q ss_pred CCCCEEeCCCCccCcccccc-ccCCCCCCEEEccCccCCcccC---hhhhhcccccceEEcCCCeeeccccCCCCCCCcc
Q 045210 421 KNLDSLDLSFNNISGHIPLS-LGQLSSLRYLDVSTNNLNGTLS---ENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQ 496 (873)
Q Consensus 421 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 496 (873)
++|++|++++|+++...... +..+++|++|++++|.+.+... ...+..+++|+.|++++|.+...
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~----------- 71 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV----------- 71 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-----------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH-----------
Confidence 56788888888877543333 6677888888888888763211 12455667777777777655422
Q ss_pred ccEEeccccccCCCcchhhhcCC----cccEEEccCCCCCccc---ChhHHhcCCCCcEEeccCcccccccC-C-----c
Q 045210 497 LQAIGLSSCFIGPQFPQWLLSQN----HLIYLDLSNSSISDTI---PDRLVKSLSQINYLNLSYNQIFGQIP-D-----L 563 (873)
Q Consensus 497 L~~L~l~~~~~~~~~~~~l~~~~----~L~~L~l~~n~l~~~~---p~~~~~~l~~L~~L~l~~n~~~~~~~-~-----~ 563 (873)
........++ +|++|++++|.+.+.. ....+..+++|++|++++|.+.+..+ . .
T Consensus 72 -------------~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 72 -------------GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp -------------HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 0111222233 6888888888776421 12334556788888888887764322 1 1
Q ss_pred cccCCCCeEeCCCCCCCCCC----CC---CCCCCcEEEccCccCcCcchhhhhhhcc-cCCCCceEeccCCcccCC----
Q 045210 564 NDAAQLETLDLSSNSLSGPL----PL---IPSSLTTLDLSSNFLSGTLSRFLCNEMN-NSMRLQVLNLGNNTLSGE---- 631 (873)
Q Consensus 564 ~~~~~L~~L~l~~n~l~~~~----~~---~~~~L~~L~l~~n~l~~~~~~~~~~~l~-~~~~L~~L~Ls~n~l~~~---- 631 (873)
...++|++|++++|.+++.. +. ..++|++|++++|.+++..+..+...+. ..++|++|++++|.+++.
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 22456788888888776532 11 1467778888877776655554444332 245777888888777753
Q ss_pred CChhhhccccCcEEEcCCCcCccCC-----cccccCCCCccEEEccCCccccc----CCcccccCCCCcEEEccCCeecc
Q 045210 632 IPDCWMNWSFLFFLHLGENDFTGNL-----PTSLGTLSSLQILHLRGNRFSGK----IPVSLQNCTELRLFDISENEFVG 702 (873)
Q Consensus 632 ~p~~l~~l~~L~~L~l~~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~ 702 (873)
++..+..+++|++|++++|++.+.. +..+..+++|++|++++|+++.. ++..+..+++|++|++++|.+.+
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 4566677777888888877776432 22223567778888888777754 45666667778888888877765
Q ss_pred cCChhHHhh----cccCcEEEccCCeeeee----CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhc
Q 045210 703 NIPTWIGER----LSGIILLSLRANQFHGF----FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFF 774 (873)
Q Consensus 703 ~ip~~~~~~----l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~ 774 (873)
..+..+... .++|+.|++++|.+++. ++..+..+++|+.||+++|.+++..+..+...-.-
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~----------- 367 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ----------- 367 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS-----------
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC-----------
Confidence 544444432 25777777777777654 44555666777777777777775544444321100
Q ss_pred hhheeeecccceeccCCCCccceEEECCCCcccc----cCChhhhcCCCCCeeeCCCCcCccc--------CCccccCCC
Q 045210 775 EDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG----EIPSQVTNLVGLQTLKLSHNFFSGR--------IPVNMGAMK 842 (873)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~--------ip~~l~~l~ 842 (873)
..+.|+.|++++|++++ .+|..+..+++|++|++++|++++. +|.. ..
T Consensus 368 -----------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~---~~ 427 (461)
T 1z7x_W 368 -----------------PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP---GC 427 (461)
T ss_dssp -----------------TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST---TC
T ss_pred -----------------CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC---Cc
Confidence 02345778888888775 6777777778888888888877754 2221 33
Q ss_pred CCCeEeccCCccccccccc
Q 045210 843 SVEALDFSSNRLQGEIPKN 861 (873)
Q Consensus 843 ~L~~L~ls~N~l~g~iP~~ 861 (873)
.|+.|++.++......+..
T Consensus 428 ~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 428 LLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp CCCEEECTTCCCCHHHHHH
T ss_pred chhheeecccccCHHHHHH
Confidence 5666666666665544443
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=8.6e-30 Score=280.79 Aligned_cols=311 Identities=21% Similarity=0.247 Sum_probs=205.8
Q ss_pred CCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCC
Q 045210 343 LTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKN 422 (873)
Q Consensus 343 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 422 (873)
+++++.++++++.++...+..+..+++|++|++++| .+.+..+..++.+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-----------------------------~i~~~~~~~~~~l~~ 94 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-----------------------------QIEEIDTYAFAYAHT 94 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-----------------------------CCCEECTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCC-----------------------------cccccChhhccCCCC
Confidence 456666666666665544444556655555544444 444444445666666
Q ss_pred CCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEec
Q 045210 423 LDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGL 502 (873)
Q Consensus 423 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 502 (873)
|++|++++|++++..|..++++++|++|++++|.++ .++...|..+++|+.|++++|.+..
T Consensus 95 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~------------------ 155 (390)
T 3o6n_A 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER------------------ 155 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB------------------
T ss_pred cCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc------------------
Confidence 777777766666655566666666777777666665 4444444555555555555544321
Q ss_pred cccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCC
Q 045210 503 SSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGP 582 (873)
Q Consensus 503 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 582 (873)
..+..+..+++|++|++++|.+.+. + ...+++|+.+++++|.+.+. ..
T Consensus 156 -------~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n~l~~~----~~----------------- 203 (390)
T 3o6n_A 156 -------IEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLSTL----AI----------------- 203 (390)
T ss_dssp -------CCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSSCCSEE----EC-----------------
T ss_pred -------cChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeeccccccccc----CC-----------------
Confidence 1233444555566666666655432 1 22345566666666554431 11
Q ss_pred CCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccC
Q 045210 583 LPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGT 662 (873)
Q Consensus 583 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 662 (873)
+.+|+.|++++|.+...... ..++|+.|++++|.+++. ..+..+++|++|++++|++.+..|..+..
T Consensus 204 ----~~~L~~L~l~~n~l~~~~~~-------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 204 ----PIAVEELDASHNSINVVRGP-------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp ----CSSCSEEECCSSCCCEEECC-------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ----CCcceEEECCCCeeeecccc-------ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 23455555555555443111 146788888888888753 56788888999999999888888888888
Q ss_pred CCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEE
Q 045210 663 LSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKIL 742 (873)
Q Consensus 663 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 742 (873)
+++|+.|++++|++++ +|..+..+++|++|++++|++. .+|..+.. +++|+.|++++|++++. | +..+++|+.|
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L 344 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTL-K--LSTHHTLKNL 344 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccc-cCcCCEEECCCCcccee-C--chhhccCCEE
Confidence 9999999999998885 5666678899999999999988 78888775 89999999999998855 2 6788999999
Q ss_pred eCCCCccccc
Q 045210 743 DLSSNNLTGV 752 (873)
Q Consensus 743 ~Ls~N~l~~~ 752 (873)
++++|++++.
T Consensus 345 ~l~~N~~~~~ 354 (390)
T 3o6n_A 345 TLSHNDWDCN 354 (390)
T ss_dssp ECCSSCEEHH
T ss_pred EcCCCCccch
Confidence 9999999864
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-29 Score=295.38 Aligned_cols=127 Identities=22% Similarity=0.288 Sum_probs=74.9
Q ss_pred CceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccC
Q 045210 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE 697 (873)
Q Consensus 618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 697 (873)
|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..++.+++|+.|+|++|++++ +|..+..+++|+.|+|++
T Consensus 234 L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred CCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence 4444444444433 2344555555555555555555555555566666666666666654 344445566666666666
Q ss_pred CeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccc
Q 045210 698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGV 752 (873)
Q Consensus 698 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 752 (873)
|.++ .+|.++.. +++|+.|++++|++.+. .+..+++|+.|++++|++++.
T Consensus 311 N~l~-~i~~~~~~-l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 311 NHLL-HVERNQPQ-FDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SCCC-CCGGGHHH-HTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEHH
T ss_pred CCCC-ccCccccc-CCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCCCh
Confidence 6666 56666654 67777777777776644 245566777777777777654
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.2e-32 Score=309.21 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=61.5
Q ss_pred CCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCC----CChhhhcCCCCCCEEECCCCCCCCCCchhhh-cCC-
Q 045210 247 SSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG----AVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN-KFI- 320 (873)
Q Consensus 247 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~- 320 (873)
++|++|++++|.+++......+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4566677776666533333345666677777777776653 2345566666666666666665543333332 233
Q ss_pred ---CcCEEEccCCcCCc----cCcccccCCCCCCEEeCCCCcCC
Q 045210 321 ---DLEYLSLSYNELQG----SIPGSLGNLTSIKSLDLSFNRLE 357 (873)
Q Consensus 321 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~ 357 (873)
+|++|++++|.++. .++..+..+++|++|++++|.++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 45666666555552 23444555555555555555544
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.8e-28 Score=263.75 Aligned_cols=283 Identities=20% Similarity=0.243 Sum_probs=215.5
Q ss_pred cccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCc
Q 045210 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN 598 (873)
Q Consensus 520 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 598 (873)
+++.++++++.+. .+|..+ .++++.|++++|.+.+..+ .+..+ ++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l---------------------~~L~~L~L~~n 88 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGL---------------------QHLYALVLVNN 88 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTC---------------------TTCCEEECCSS
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCC---------------------CCCcEEECCCC
Confidence 4555666655554 344332 1345555555555554433 34444 45555555555
Q ss_pred cCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCccc-
Q 045210 599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFS- 677 (873)
Q Consensus 599 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~- 677 (873)
.+++..|.. +.++++|++|++++|+++ .+|..+. ++|++|++++|++.+..+..+..+++|+.|++++|+++
T Consensus 89 ~l~~~~~~~----~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 89 KISKIHEKA----FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp CCCEECGGG----STTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred ccCccCHhH----hhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 555554543 445888999999999888 5555544 78999999999998766667888999999999999886
Q ss_pred -ccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChh
Q 045210 678 -GKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC 756 (873)
Q Consensus 678 -~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 756 (873)
+..|..+..+ +|++|++++|+++ .+|..+ .++|+.|++++|++++..|..+..+++|+.|++++|++++..|..
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred CCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 4677778877 8999999999988 577765 478999999999999888888999999999999999999877777
Q ss_pred hhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCc
Q 045210 757 INNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPV 836 (873)
Q Consensus 757 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 836 (873)
++.+++| +.|++++|+++ .+|..++.+++|++|++++|.+++..+.
T Consensus 237 ~~~l~~L---------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 237 LSFLPTL---------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp GGGCTTC---------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred hhCCCCC---------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence 7766665 88999999998 7899999999999999999999977666
Q ss_pred cccC------CCCCCeEeccCCccc--cccccccccCCCCCcccC
Q 045210 837 NMGA------MKSVEALDFSSNRLQ--GEIPKNMVNLEFLEIFNI 873 (873)
Q Consensus 837 ~l~~------l~~L~~L~ls~N~l~--g~iP~~l~~l~~L~~l~l 873 (873)
.+.. ..+|+.+++++|++. +..|..+..++.|+.+++
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred HccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 6654 367889999999987 667778888999988875
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.9e-28 Score=263.59 Aligned_cols=295 Identities=18% Similarity=0.240 Sum_probs=212.6
Q ss_pred CCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCc
Q 045210 121 KHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLK 200 (873)
Q Consensus 121 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~ 200 (873)
.++++++++++.++. +|..+. ++|++|++++|.+.+..|..++++++|++|++++|.++.+.+.. +.++++|+
T Consensus 33 c~l~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA--VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA---FSPLRKLQ 105 (332)
T ss_dssp EETTEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG---STTCTTCC
T ss_pred ccCCEEECCCCCccc--cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH---hhCcCCCC
Confidence 378999999999875 676653 78999999999999888889999999999999999998775543 67889999
Q ss_pred EEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCC-CchhHhhcCCCCCcEEEc
Q 045210 201 HLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD-SSIVNQVLGLVNLVFLDL 279 (873)
Q Consensus 201 ~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L 279 (873)
+|++++|.++.++... .++|++|++++|.+.++.+..|.++++|++|++++|.++. +..+..+..+ +|++|++
T Consensus 106 ~L~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp EEECCSSCCCSCCSSC-----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred EEECCCCcCCccCccc-----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 9999999988775422 2789999999999998888889999999999999998852 2334455555 7888888
Q ss_pred cCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCc
Q 045210 280 STNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESK 359 (873)
Q Consensus 280 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 359 (873)
++|.+++ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|++++|+++ .
T Consensus 180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp CSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred cCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 8888774 454443 67788888888877766677777788888888888777766667777777888888877776 4
Q ss_pred chhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccC--ccc
Q 045210 360 IPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNIS--GHI 437 (873)
Q Consensus 360 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~ 437 (873)
+|..+..+++|++|++++|++++.....+... .+ ....+.|+.|++++|++. +..
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~---------------------~~--~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV---------------------GF--GVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS---------------------SC--CSSSCCBSEEECCSSSSCGGGSC
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHcccc---------------------cc--ccccccccceEeecCcccccccC
Confidence 66667777776666666666654332221100 00 011345566666666554 344
Q ss_pred cccccCCCCCCEEEccCc
Q 045210 438 PLSLGQLSSLRYLDVSTN 455 (873)
Q Consensus 438 ~~~l~~l~~L~~L~L~~n 455 (873)
|..+..+++|+.+++++|
T Consensus 313 ~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 313 PATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGGGTTBCCSTTEEC---
T ss_pred cccccccchhhhhhcccc
Confidence 555555666666666555
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=7.5e-28 Score=258.74 Aligned_cols=245 Identities=22% Similarity=0.327 Sum_probs=146.8
Q ss_pred CCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcE
Q 045210 122 HLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKH 201 (873)
Q Consensus 122 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~ 201 (873)
++++++++++.++. +|..+. ++|++|++++|.+++..+..++++++|++|++++|.++.+.+.. +.++++|++
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA---FAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT---TTTCTTCCE
T ss_pred CCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH---hcCCCCCCE
Confidence 34555555555543 343332 45555666655555555555555566666666655555543322 345555555
Q ss_pred EeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCC-CchhHhhcCCCCCcEEEcc
Q 045210 202 LDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD-SSIVNQVLGLVNLVFLDLS 280 (873)
Q Consensus 202 L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~ 280 (873)
|++++|.++.++.. ..++|++|++++|.+.+..+..+.++++|++|++++|.+.. +..+..+.++++|++|+++
T Consensus 105 L~Ls~n~l~~l~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 105 LYLSKNQLKELPEK-----MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp EECCSSCCSBCCSS-----CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred EECCCCcCCccChh-----hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 55555555544321 12567777777777777777777777777777777777652 1334556667777777777
Q ss_pred CCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcc
Q 045210 281 TNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKI 360 (873)
Q Consensus 281 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 360 (873)
+|.++. +|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..++.+++|++|++++|+++ .+
T Consensus 180 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 180 DTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred CCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 777663 443332 56777777777666655666666677777777777666655556666666666666666665 45
Q ss_pred hhhhhcCCCCCEEEccCCcCcc
Q 045210 361 PRAFKRLRHLRSVNLSGNKLSQ 382 (873)
Q Consensus 361 ~~~l~~l~~L~~L~L~~n~l~~ 382 (873)
|..+..+++|++|++++|++++
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCC
T ss_pred ChhhccCCCcCEEECCCCcCCc
Confidence 5556666655555555555544
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.5e-27 Score=256.48 Aligned_cols=284 Identities=22% Similarity=0.260 Sum_probs=193.2
Q ss_pred cccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCc
Q 045210 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN 598 (873)
Q Consensus 520 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 598 (873)
+++.++++++.+. .+|..+ .++++.|++++|.+++..+ .+..+++|++|++++|.+.+.
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------- 91 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI---------------- 91 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB----------------
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee----------------
Confidence 5677777777665 345433 2466777777777766555 566666666666665555543
Q ss_pred cCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccc
Q 045210 599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSG 678 (873)
Q Consensus 599 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 678 (873)
.|.. +..+++|++|++++|+++ .+|..+. ++|++|++++|++.+..+..+.++++|+.|++++|++..
T Consensus 92 -----~~~~----~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 92 -----SPGA----FAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp -----CTTT----TTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred -----CHHH----hcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 3332 333667777777777766 3444433 577777777777776666667777777777777777743
Q ss_pred --cCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChh
Q 045210 679 --KIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC 756 (873)
Q Consensus 679 --~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 756 (873)
..+..+..+++|++|++++|.++ .+|..+ .++|+.|++++|++++..|..+..+++|+.|++++|.+++..|..
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred cCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 56667777777777777777776 566654 367778888888877777777777888888888888877666666
Q ss_pred hhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCc
Q 045210 757 INNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPV 836 (873)
Q Consensus 757 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 836 (873)
+..+++| +.|++++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus 236 ~~~l~~L---------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 236 LANTPHL---------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp GGGSTTC---------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred ccCCCCC---------------------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence 6655554 67888888877 6777778888888888888888766555
Q ss_pred cccC------CCCCCeEeccCCcccc--ccccccccCCCCCcccC
Q 045210 837 NMGA------MKSVEALDFSSNRLQG--EIPKNMVNLEFLEIFNI 873 (873)
Q Consensus 837 ~l~~------l~~L~~L~ls~N~l~g--~iP~~l~~l~~L~~l~l 873 (873)
.+.. ...++.+++++|++.. ..|..+..+..|+.+++
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC
T ss_pred hcCCcccccccccccceEeecCcccccccCccccccccceeEEEe
Confidence 5543 3667788888887752 44566777777776654
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.3e-30 Score=304.63 Aligned_cols=429 Identities=17% Similarity=0.090 Sum_probs=239.9
Q ss_pred ccCccCCCCCCeecCCCCCCC---CCCCCcccc------------CCCCCCEEeccCCcCCCCCcccccC-CC-CCcEEE
Q 045210 114 NPSLLGLKHLIHLDLSYNDFQ---GIQIPRFLG------------SLENLMYLNISRAGFVGIIPHQIGN-LS-NLQFLD 176 (873)
Q Consensus 114 ~~~l~~l~~L~~L~Ls~n~~~---~~~~~~~l~------------~l~~L~~L~L~~n~l~~~~p~~l~~-l~-~L~~L~ 176 (873)
+..+..+++|++|+|+++... +. +|..++ .+++|++|+|++|.+++..+..++. ++ +|++|+
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 344567888999999876421 11 232222 6888999999988877766666665 33 488888
Q ss_pred CCCCCCCCCccCccc-cccCCCCCcEEeCCCCCCCCCCC--ccccccCCCCCCEEEccCCCCCCCCc----cccCCCCCc
Q 045210 177 LRPNYLGGLYVEDFG-WVSHLSLLKHLDLSGVDLSKTSD--GPLITNSLHSLETLRFSGCLLHHISP----LSFANFSSL 249 (873)
Q Consensus 177 L~~n~l~~l~~~~~~-~l~~l~~L~~L~L~~~~l~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L 249 (873)
+++|.- +....+. ...++++|++|++++|.+++... .......+++|++|++++|.+++... ..+.++++|
T Consensus 145 L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 145 LDKCSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EESCEE--EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred CcCCCC--cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 888751 1111111 12467778888888777654421 12234456777777777777664332 233456677
Q ss_pred cEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCC---CCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEE
Q 045210 250 VTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQ---GAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLS 326 (873)
Q Consensus 250 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 326 (873)
++|++++|.+. .++..+..+++|++|+++..... +..+..+..+++|+.|+++++.. +.+|..+..+++|++|+
T Consensus 223 ~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 223 VSVKVGDFEIL--ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLD 299 (592)
T ss_dssp CEEECSSCBGG--GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEE
T ss_pred cEEeccCccHH--HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEe
Confidence 77777776663 35566666677777776643222 22334455666666666665432 34556666666677777
Q ss_pred ccCCcCCccCc-ccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccC-----------CcCcchhhHHHHHhhhc
Q 045210 327 LSYNELQGSIP-GSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSG-----------NKLSQEISQVLDMFSAC 394 (873)
Q Consensus 327 L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~~~~ 394 (873)
+++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++ +.+++.....+ ...+
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l--~~~~ 377 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL--AQGC 377 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH--HHHC
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH--HhhC
Confidence 76666543322 2345666666666662222222333345566666666662 34443322111 1111
Q ss_pred ccccccEEEccCcccCCccccccCC-CCCCCEEeCC----CCccCcc-----ccccccCCCCCCEEEccCcc--CCcccC
Q 045210 395 ASNVLESLDLSNNTLFGLLTNQIGN-FKNLDSLDLS----FNNISGH-----IPLSLGQLSSLRYLDVSTNN--LNGTLS 462 (873)
Q Consensus 395 ~~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~ 462 (873)
++|++|+++.+.+++..+..++. +++|++|+++ .|.+++. ++..+..+++|++|+++.|. +++...
T Consensus 378 --~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 378 --QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp --TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred --ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 22666666666665555444443 6666666664 4445432 23334456666666665432 333222
Q ss_pred hhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhc
Q 045210 463 ENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKS 542 (873)
Q Consensus 463 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~ 542 (873)
......+++|+.|++++|.++.. .++..+..+++|++|++++|.+++.....+...
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~------------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDE------------------------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHH------------------------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHHHHhCccceEeeccCCCCCHH------------------------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 22222345555555555443321 244555677778888888887765555555666
Q ss_pred CCCCcEEeccCcccccccC-C-ccccCCCCeEeCCC
Q 045210 543 LSQINYLNLSYNQIFGQIP-D-LNDAAQLETLDLSS 576 (873)
Q Consensus 543 l~~L~~L~l~~n~~~~~~~-~-~~~~~~L~~L~l~~ 576 (873)
+++|++|++++|+++..-. . ...++.+....+..
T Consensus 512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 7788888888887665321 1 22345555444443
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.4e-28 Score=263.09 Aligned_cols=225 Identities=21% Similarity=0.254 Sum_probs=140.6
Q ss_pred CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCcc
Q 045210 588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQ 667 (873)
Q Consensus 588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 667 (873)
..++.|++++|.++ .+|.. +..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..++++++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~----l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQ----AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSC----GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred cceeEEEccCCCch-hcChh----hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 45666666666665 34433 233666666666666666 56666666666666666666666 5566666666666
Q ss_pred EEEccCCcccccCCccccc---------CCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCC
Q 045210 668 ILHLRGNRFSGKIPVSLQN---------CTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLAS 738 (873)
Q Consensus 668 ~L~L~~n~l~~~~p~~l~~---------l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 738 (873)
+|++++|++.+.+|..+.. +++|++|++++|+++ .+|..+.. +++|++|++++|++++ +|+.+..+++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~~-l~~~l~~l~~ 230 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPK 230 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCCC-CCGGGGGCTT
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCCc-CchhhccCCC
Confidence 6666666666666655543 666666666666666 56665553 6666666666666663 4445666666
Q ss_pred CCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCC
Q 045210 739 LKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLV 818 (873)
Q Consensus 739 L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~ 818 (873)
|+.|++++|++.+.+|..++.+++| +.|++++|++.+.+|..+++++
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L---------------------------------~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPL---------------------------------KRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCC---------------------------------CEEECTTCTTCCBCCTTGGGCT
T ss_pred CCEEECcCCcchhhhHHHhcCCCCC---------------------------------CEEECCCCCchhhcchhhhcCC
Confidence 6666666666666666655554443 5666666666666666666666
Q ss_pred CCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210 819 GLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ 855 (873)
Q Consensus 819 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 855 (873)
+|++|+|++|++.+.+|..++++++|+.++++.|.+.
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 6666666666666666666666666666666655443
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.2e-29 Score=290.47 Aligned_cols=404 Identities=12% Similarity=0.065 Sum_probs=183.8
Q ss_pred CCCCCcEEEccCCcCCCCChhhhcC-CC-CCCEEECCCCCC-CC-CCchhhhcCCCcCEEEccCCcCCcc----Cccccc
Q 045210 270 GLVNLVFLDLSTNNFQGAVPDAIQN-ST-SLQHLDLSRNHF-SS-SVPDWFNKFIDLEYLSLSYNELQGS----IPGSLG 341 (873)
Q Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~l~~-l~-~L~~L~l~~n~l-~~-~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~ 341 (873)
.+++|++|++++|.+++..+..+.. ++ +|++|++++|.. +. .++.....+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4444555555444444333333332 12 244444444431 00 0111122444555555555444333 222233
Q ss_pred CCCCCCEEeCCCCcCCC----cchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccC---Cccc
Q 045210 342 NLTSIKSLDLSFNRLES----KIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLF---GLLT 414 (873)
Q Consensus 342 ~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~ 414 (873)
.+++|++|++++|.+++ .++..+..+++|++|++++|.+.+.. ..+... +.|++|+++.+... +..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~-----~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA-----ANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHC-----TTCCEEEECBCCCCTTCTTSS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhh-----hHHHhhcccccccccchHHHH
Confidence 44455555555544431 22233344455555555554444321 111111 11445544432211 1222
Q ss_pred cccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCC
Q 045210 415 NQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPP 494 (873)
Q Consensus 415 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 494 (873)
..+..+++|+.++++++... .+|..+..+++|++|++++|.+++......+..+++|+.|+++ +.+
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~------------ 329 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVI------------ 329 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGG------------
T ss_pred HHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-Ccc------------
Confidence 34455566666666654322 4555555566666666666654433222234455555555554 111
Q ss_pred ccccEEeccccccCCCcchhhhcCCcccEEEccC-----------CCCCcccChhHHhcCCCCcEEeccCcccccccC-C
Q 045210 495 FQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSN-----------SSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-D 562 (873)
Q Consensus 495 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~ 562 (873)
....++.....+++|++|++++ +.+++.....+...+++|++|+++.|.+++..+ .
T Consensus 330 ------------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 330 ------------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp ------------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred ------------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 1112334445566677777773 344443333444556677777766666554333 2
Q ss_pred ccc-cCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcch-hhhhhhcccCCCCceEeccCCc--ccCCCChhhhc
Q 045210 563 LND-AAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLS-RFLCNEMNNSMRLQVLNLGNNT--LSGEIPDCWMN 638 (873)
Q Consensus 563 ~~~-~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~l~~~~~L~~L~Ls~n~--l~~~~p~~l~~ 638 (873)
+.. +++|+.|+++++. ..|.+++... ..+...+.++++|+.|++++|. +++..+..+..
T Consensus 398 l~~~~~~L~~L~l~~~~-----------------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLD-----------------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp HHHHCCSCCEEEEEECS-----------------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred HHhhCCCCcEEEEeecC-----------------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 222 4445555544221 1222332110 0111122336667777765433 44433333332
Q ss_pred -cccCcEEEcCCCcCcc-CCcccccCCCCccEEEccCCccccc-CCcccccCCCCcEEEccCCeecccCChhHHhhcccC
Q 045210 639 -WSFLFFLHLGENDFTG-NLPTSLGTLSSLQILHLRGNRFSGK-IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGI 715 (873)
Q Consensus 639 -l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L 715 (873)
+++|++|++++|++++ .++..+..+++|++|++++|++++. ++..+..+++|++|++++|++++.-...+...++.+
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW 540 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTE
T ss_pred hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCc
Confidence 5666666666666654 2333445566666666666665533 223334566666666666666544333444345555
Q ss_pred cEEEccC
Q 045210 716 ILLSLRA 722 (873)
Q Consensus 716 ~~L~L~~ 722 (873)
....+..
T Consensus 541 ~~~~~~~ 547 (592)
T 3ogk_B 541 NIELIPS 547 (592)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 5444443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.7e-27 Score=248.49 Aligned_cols=246 Identities=24% Similarity=0.279 Sum_probs=128.3
Q ss_pred EeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccC--CCChhhhccccCcEEEcCC
Q 045210 572 LDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSG--EIPDCWMNWSFLFFLHLGE 649 (873)
Q Consensus 572 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~l~~ 649 (873)
++.+++.++......++++++|++++|.++...+.. +.++++|++|++++|.++. ..|..+..+++|++|++++
T Consensus 12 l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhH----hhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 344444433332233445555555555544322211 2335555555555555542 2244445555555555555
Q ss_pred CcCccCCcccccCCCCccEEEccCCcccccCC-cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeee-
Q 045210 650 NDFTGNLPTSLGTLSSLQILHLRGNRFSGKIP-VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHG- 727 (873)
Q Consensus 650 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~- 727 (873)
|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+.+
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECTTCEEGGG
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECCCCccccc
Confidence 5555 344445555555555555555554433 34555555555555555555444444432 5555555555555554
Q ss_pred eCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCccc
Q 045210 728 FFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS 807 (873)
Q Consensus 728 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 807 (873)
.+|..+..+++|+.|++++|.+++..|..++.+++| +.|++++|+++
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------~~L~L~~N~l~ 212 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL---------------------------------QVLNMSHNNFF 212 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------CEEECTTSCCS
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC---------------------------------CEEECCCCccC
Confidence 445555555556666666665555545555444433 55556666555
Q ss_pred ccCChhhhcCCCCCeeeCCCCcCcccCCccccCC-CCCCeEeccCCcccc
Q 045210 808 GEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM-KSVEALDFSSNRLQG 856 (873)
Q Consensus 808 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g 856 (873)
+..+..+..+++|++|++++|.+++..|..++.+ ++|+.|++++|++++
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 5444455555556666666666655555555555 355566666665554
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.3e-27 Score=254.56 Aligned_cols=267 Identities=22% Similarity=0.241 Sum_probs=217.8
Q ss_pred ecccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccc
Q 045210 112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFG 191 (873)
Q Consensus 112 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~ 191 (873)
.+|..+. ++|++|++++|.+++. .+..++.+++|++|++++|.+++..|..++++++|++|++++|.++.++...
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-- 119 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW-- 119 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH--
T ss_pred ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH--
Confidence 3444443 5899999999999874 4458899999999999999999888889999999999999999998876543
Q ss_pred cccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCC-CCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcC
Q 045210 192 WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC-LLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLG 270 (873)
Q Consensus 192 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 270 (873)
+.++++|++|++++|.++.++. ...+..+++|++|++++| .+..+.+..|.++++|++|++++|.+. +..+..+..
T Consensus 120 -~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~ 196 (353)
T 2z80_A 120 -FKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKS 196 (353)
T ss_dssp -HTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTT
T ss_pred -hCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-ccCHHHHhc
Confidence 5788999999999999887653 135678899999999999 578888888999999999999999987 556788889
Q ss_pred CCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhh---cCCCcCEEEccCCcCCc----cCcccccCC
Q 045210 271 LVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFN---KFIDLEYLSLSYNELQG----SIPGSLGNL 343 (873)
Q Consensus 271 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~----~~~~~l~~l 343 (873)
+++|++|++++|.++......+..+++|++|++++|.+++..+..+. ....++.++++++.+.+ .+|..++.+
T Consensus 197 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 99999999999998744344455689999999999998876554443 46778889999888875 467788899
Q ss_pred CCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchhhH
Q 045210 344 TSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQ 386 (873)
Q Consensus 344 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 386 (873)
++|++|++++|+++...+..+..+++|++|++++|++.+..+.
T Consensus 277 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 9999999999999854444468899999999999999887653
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.6e-26 Score=256.75 Aligned_cols=249 Identities=22% Similarity=0.209 Sum_probs=219.8
Q ss_pred CCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcC
Q 045210 569 LETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLG 648 (873)
Q Consensus 569 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 648 (873)
...++.++..++......++++++|++++|.+++..+.. +.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHH----cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456777777776554456788999999999998877665 4558999999999999998888999999999999999
Q ss_pred CCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeee
Q 045210 649 ENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF 728 (873)
Q Consensus 649 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 728 (873)
+|++++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|...+.+|...+..+++|+.|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99999777777999999999999999999888889999999999999997666678876666699999999999999864
Q ss_pred CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210 729 FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG 808 (873)
Q Consensus 729 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 808 (873)
| .+..+++|+.|++++|.+++..|..|.++++| +.|++++|++++
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------~~L~L~~n~l~~ 256 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL---------------------------------KKLWVMNSQVSL 256 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC---------------------------------CEEECTTSCCCE
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCC---------------------------------CEEEeCCCcCce
Confidence 4 58899999999999999998888888877766 899999999999
Q ss_pred cCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210 809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG 856 (873)
Q Consensus 809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 856 (873)
..|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 999999999999999999999998888888999999999999999764
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-26 Score=243.18 Aligned_cols=256 Identities=21% Similarity=0.212 Sum_probs=209.0
Q ss_pred CeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCC
Q 045210 570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGE 649 (873)
Q Consensus 570 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 649 (873)
++++.+++.++......++++++|++++|.+++..+.. +..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHH----cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666666544445678888888888887765554 44588999999999999988888999999999999999
Q ss_pred Cc-CccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeee
Q 045210 650 ND-FTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF 728 (873)
Q Consensus 650 n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 728 (873)
|+ +....|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+. .+++|+.|++++|++++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-cCCCccEEECCCCccccc
Confidence 97 7766688899999999999999999988888899999999999999999844334444 489999999999999987
Q ss_pred CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210 729 FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG 808 (873)
Q Consensus 729 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 808 (873)
.+..+..+++|+.|++++|.+++..|..++.+++| +.|++++|++++
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------------------~~L~l~~n~l~~ 215 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL---------------------------------MTLYLFANNLSA 215 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC---------------------------------CEEECCSSCCSC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccc---------------------------------cEeeCCCCcCCc
Confidence 77778999999999999999998888888776665 889999999997
Q ss_pred cCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccccccccccc
Q 045210 809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVN 864 (873)
Q Consensus 809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~ 864 (873)
..|..+..+++|+.|++++|++.+..+.. .....++.++.+.+.+.+..|+.+.+
T Consensus 216 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 216 LPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp CCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred CCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 66677899999999999999998765532 22234566678889999999988765
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.7e-26 Score=245.30 Aligned_cols=283 Identities=20% Similarity=0.247 Sum_probs=215.3
Q ss_pred cEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccC
Q 045210 522 IYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFL 600 (873)
Q Consensus 522 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l 600 (873)
+.++.+++.++ .+|..+ .+++++|++++|.+....+ .+..+++|++|+++ +|.+
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~---------------------~n~l 64 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS---------------------SNGL 64 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC---------------------SSCC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECC---------------------CCcc
Confidence 35666666654 344432 2456666666666654333 24455555555554 4444
Q ss_pred cCc--chhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCc-ccccCCCCccEEEccCCccc
Q 045210 601 SGT--LSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLP-TSLGTLSSLQILHLRGNRFS 677 (873)
Q Consensus 601 ~~~--~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 677 (873)
+.. .+..+ ..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.
T Consensus 65 ~~~~~~~~~~----~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 65 SFKGCCSQSD----FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp CEEEEEEHHH----HSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CcccCccccc----ccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC
Confidence 422 23332 23788999999999988 466778889999999999999986554 57888999999999999999
Q ss_pred ccCCcccccCCCCcEEEccCCeecc-cCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChh
Q 045210 678 GKIPVSLQNCTELRLFDISENEFVG-NIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRC 756 (873)
Q Consensus 678 ~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 756 (873)
+..+..+..+++|++|++++|.+++ .+|..+.. +++|++|++++|++++..|..+..+++|+.|++++|++++..+..
T Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 218 (306)
T 2z66_A 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218 (306)
T ss_dssp ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred ccchhhcccCcCCCEEECCCCccccccchhHHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh
Confidence 8888889999999999999999986 46776665 999999999999999988999999999999999999999776666
Q ss_pred hhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcC-CCCCeeeCCCCcCcccCC
Q 045210 757 INNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNL-VGLQTLKLSHNFFSGRIP 835 (873)
Q Consensus 757 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~ip 835 (873)
+..+++| +.||+++|++++..|..+..+ ++|++|++++|.+++..+
T Consensus 219 ~~~l~~L---------------------------------~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 219 YKCLNSL---------------------------------QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp GTTCTTC---------------------------------CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ccCcccC---------------------------------CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 6665554 899999999999999999998 499999999999987533
Q ss_pred c--cccCCCCCCeEeccCCccccccccccccCCCC
Q 045210 836 V--NMGAMKSVEALDFSSNRLQGEIPKNMVNLEFL 868 (873)
Q Consensus 836 ~--~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L 868 (873)
. ...-+...+.+.+..+.+.+..|+.+.+.+.+
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~ 300 (306)
T 2z66_A 266 HQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 300 (306)
T ss_dssp GHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGG
T ss_pred hHHHHHHHHhhhhhhccccccccCCchhhCCceee
Confidence 1 12224455667788899999999988876544
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=7.3e-26 Score=253.29 Aligned_cols=249 Identities=21% Similarity=0.195 Sum_probs=214.9
Q ss_pred CCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcC
Q 045210 569 LETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLG 648 (873)
Q Consensus 569 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 648 (873)
.+.++.++..++......+++++.|++++|++++..+.. +.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456777777776555556788899999999888766654 5568999999999999998888899999999999999
Q ss_pred CCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeee
Q 045210 649 ENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGF 728 (873)
Q Consensus 649 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 728 (873)
+|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++|...+.+|...+..+++|+.|++++|+++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 9999976667899999999999999999988888899999999999999766667777666669999999999999984
Q ss_pred CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccc
Q 045210 729 FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSG 808 (873)
Q Consensus 729 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 808 (873)
+| .+..+++|+.|+|++|++++..|..|..+++| +.|++++|++++
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------~~L~L~~n~l~~ 245 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL---------------------------------QKLWMIQSQIQV 245 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC---------------------------------CEEECTTCCCCE
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccC---------------------------------CEEECCCCceeE
Confidence 44 58889999999999999998888888877766 899999999999
Q ss_pred cCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210 809 EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG 856 (873)
Q Consensus 809 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 856 (873)
..|..+.++++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 889999999999999999999998888888999999999999999853
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=250.64 Aligned_cols=278 Identities=18% Similarity=0.176 Sum_probs=176.8
Q ss_pred CCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCC---CCCCCcEEEccCccCcCcchhhhhhhcccCCCCce
Q 045210 544 SQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPL---IPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQV 620 (873)
Q Consensus 544 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~ 620 (873)
+.....+.+++.++.....+. ++|++|++++|.+++..+. .+++|++|++++|.+++..+.. +.++++|++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~ 104 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS----FSSLGSLEH 104 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCE
T ss_pred CCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh----cCCCCCCCE
Confidence 444456666666664433332 3667777777766654432 2456666666666666554443 333666666
Q ss_pred EeccCCcccCCCChhhhccccCcEEEcCCCcCccCCc-ccccCCCCccEEEccCC-cccccCCcccccCCCCcEEEccCC
Q 045210 621 LNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLP-TSLGTLSSLQILHLRGN-RFSGKIPVSLQNCTELRLFDISEN 698 (873)
Q Consensus 621 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n 698 (873)
|++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 6666666665444446666666666666666663222 25666666666666666 355455556666666666666666
Q ss_pred eecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhhe
Q 045210 699 EFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDAL 778 (873)
Q Consensus 699 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~ 778 (873)
++++..|..+.. +++|++|++++|++....+..+..+++|+.|++++|.+++..+..+.....
T Consensus 185 ~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~---------------- 247 (353)
T 2z80_A 185 DLQSYEPKSLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET---------------- 247 (353)
T ss_dssp TCCEECTTTTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C----------------
T ss_pred CcCccCHHHHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc----------------
Confidence 666555665554 666666666666664332222334566666666666666544433322111
Q ss_pred eeecccceeccCCCCccceEEECCCCcccc----cCChhhhcCCCCCeeeCCCCcCcccCCcc-ccCCCCCCeEeccCCc
Q 045210 779 IVYKKKVVKYPIGYPYYLKVLDLSANYFSG----EIPSQVTNLVGLQTLKLSHNFFSGRIPVN-MGAMKSVEALDFSSNR 853 (873)
Q Consensus 779 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~ 853 (873)
...++.++++++.+++ .+|+.++++++|++|++++|+++ .+|.. ++.+++|+.|++++|+
T Consensus 248 --------------~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 248 --------------NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp --------------CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred --------------cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 2345677777777765 58889999999999999999999 67776 5899999999999999
Q ss_pred cccccc
Q 045210 854 LQGEIP 859 (873)
Q Consensus 854 l~g~iP 859 (873)
+.+..|
T Consensus 313 ~~~~~~ 318 (353)
T 2z80_A 313 WDCSCP 318 (353)
T ss_dssp BCCCHH
T ss_pred ccCcCC
Confidence 998876
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=4.5e-25 Score=231.69 Aligned_cols=237 Identities=22% Similarity=0.229 Sum_probs=148.5
Q ss_pred CCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCC
Q 045210 146 ENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSL 225 (873)
Q Consensus 146 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L 225 (873)
++|++|++++|.+++..+..++++++|++|++++|.++.+... .+..+++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----------------------------~~~~l~~L 82 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-----------------------------AFTGLALL 82 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----------------------------TTTTCTTC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-----------------------------hcCCccCC
Confidence 4555555555555554445555555555555555554443222 12233333
Q ss_pred CEEEccCCC-CCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECC
Q 045210 226 ETLRFSGCL-LHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLS 304 (873)
Q Consensus 226 ~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 304 (873)
++|++++|. +..+.+..+.++++|++|++++|.+. +..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 444444443 34444455555666666666666665 3334555666666777777776665555667777888888888
Q ss_pred CCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcchh
Q 045210 305 RNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQEI 384 (873)
Q Consensus 305 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 384 (873)
+|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 88777655556778888888888888888777888888888888888888888777777888888888888888877544
Q ss_pred hHHHHHhhhcccccccEEEccCcccCCccccccC
Q 045210 385 SQVLDMFSACASNVLESLDLSNNTLFGLLTNQIG 418 (873)
Q Consensus 385 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 418 (873)
..... .. .++.+....+.+....|..+.
T Consensus 242 ~~~~~-~~-----~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 242 RARPL-WA-----WLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp GGHHH-HH-----HHHHCCSEECCCBEEESGGGT
T ss_pred CcHHH-HH-----HHHhcccccCccccCCchHhC
Confidence 33211 11 044445555556555555443
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=8.5e-28 Score=255.60 Aligned_cols=249 Identities=19% Similarity=0.180 Sum_probs=168.6
Q ss_pred CCCCeEeCCCCCCCCCCCC-CCCCCcEEEccCccC-cCcchhhhh---hhcccCCCCceEeccCCcccCCCChhh--hcc
Q 045210 567 AQLETLDLSSNSLSGPLPL-IPSSLTTLDLSSNFL-SGTLSRFLC---NEMNNSMRLQVLNLGNNTLSGEIPDCW--MNW 639 (873)
Q Consensus 567 ~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l-~~~~~~~~~---~~l~~~~~L~~L~Ls~n~l~~~~p~~l--~~l 639 (873)
++|+.+++++|.+ .+|. .+..++.|++++|.+ .+.+|..+. ..+.++++|++|++++|++++.+|..+ ..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3455555555555 3332 233355666666665 334444332 011136778888888888887777765 777
Q ss_pred ccCcEEEcCCCcCccCCcccccCC-----CCccEEEccCCcccccCCcccccCCCCcEEEccCCeeccc--CChhH-Hhh
Q 045210 640 SFLFFLHLGENDFTGNLPTSLGTL-----SSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN--IPTWI-GER 711 (873)
Q Consensus 640 ~~L~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--ip~~~-~~~ 711 (873)
++|++|++++|++++. |..++.+ ++|++|++++|++.+..|..++.+++|++|++++|++.+. +|..+ +..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 8888888888888765 6666665 7888888888888877777788888888888888877654 23333 124
Q ss_pred cccCcEEEccCCeeee--eCC-cccCCCCCCCEEeCCCCccccccCh-hhhhhhcCchhhcchhhhchhheeeeccccee
Q 045210 712 LSGIILLSLRANQFHG--FFP-PELCGLASLKILDLSSNNLTGVIPR-CINNLAGMAKEVLEVDKFFEDALIVYKKKVVK 787 (873)
Q Consensus 712 l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 787 (873)
+++|++|++++|++++ .++ ..+..+++|+.|++++|.+++.+|. .+..+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l--------------------------- 252 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP--------------------------- 252 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC---------------------------
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc---------------------------
Confidence 7788888888887773 222 2334677888888888888876642 22222
Q ss_pred ccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210 788 YPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG 856 (873)
Q Consensus 788 ~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 856 (873)
+.|+.|++++|+++ .+|..+. ++|++|++++|++++. |. ++.+++|+.|++++|++++
T Consensus 253 ------~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 ------SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ------TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ------CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 33478888888887 7787776 7888888888888865 66 7888888888888888875
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.9e-25 Score=251.88 Aligned_cols=269 Identities=27% Similarity=0.354 Sum_probs=185.9
Q ss_pred cccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCcc
Q 045210 520 HLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF 599 (873)
Q Consensus 520 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 599 (873)
+++.|++++|.+. .+|..+. ++|++|++++|.++.. |. .+++|++|++++|.+++ +|..+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~l-p~--~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCC-CC--CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCC-CC--cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCCc
Confidence 4677777777776 5565443 5777777777777643 33 45677777777777764 44466777778887777
Q ss_pred CcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCccccc
Q 045210 600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGK 679 (873)
Q Consensus 600 l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 679 (873)
+++..+ .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|++++
T Consensus 113 l~~l~~--------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 113 LTHLPA--------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CCCCCC--------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred CCCCCC--------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 765322 25677888888887774 4443 3778888888887774 443 24677788888888774
Q ss_pred CCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhh
Q 045210 680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINN 759 (873)
Q Consensus 680 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 759 (873)
+| ..+++|+.|++++|.++ .+|.. +++|+.|++++|.++. +|.. +++|+.|++++|.+++ +|. .
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp~---~ 239 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPV---L 239 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCC---C
T ss_pred Cc---ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CCC---C
Confidence 44 44677888888888877 45542 5678888888887773 4432 4678888888888774 551 1
Q ss_pred hhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCcccc
Q 045210 760 LAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMG 839 (873)
Q Consensus 760 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 839 (873)
+++|+.|++++|+++ .+|. .+++|++|+|++|.++ .+|..++
T Consensus 240 ---------------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~ 281 (622)
T 3g06_A 240 ---------------------------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLI 281 (622)
T ss_dssp ---------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGG
T ss_pred ---------------------------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHh
Confidence 233477888888887 5665 5677888888888887 6788888
Q ss_pred CCCCCCeEeccCCccccccccccccCCC
Q 045210 840 AMKSVEALDFSSNRLQGEIPKNMVNLEF 867 (873)
Q Consensus 840 ~l~~L~~L~ls~N~l~g~iP~~l~~l~~ 867 (873)
++++|+.|++++|++++.+|..+..++.
T Consensus 282 ~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 282 HLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp GSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred hccccCEEEecCCCCCCcCHHHHHhccc
Confidence 8888888888888888887776665543
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-26 Score=247.48 Aligned_cols=268 Identities=22% Similarity=0.195 Sum_probs=164.6
Q ss_pred ccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccC-CccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCcc
Q 045210 521 LIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNF 599 (873)
Q Consensus 521 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 599 (873)
++..+++.+.+. ..+..++..+++|++|++++|.+.+..| .+..+++|++|++++|.+.+
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------ 72 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------------ 72 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE------------------
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc------------------
Confidence 333444444442 2333344444555556665555555443 44455444444444444332
Q ss_pred CcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCccccc
Q 045210 600 LSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGK 679 (873)
Q Consensus 600 l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 679 (873)
..+ +..+++|++|++++|++++. ...++|++|++++|++++..+. .+++|+.|++++|++++.
T Consensus 73 ---~~~------~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~ 135 (317)
T 3o53_A 73 ---TLD------LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITML 135 (317)
T ss_dssp ---EEE------ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSG
T ss_pred ---chh------hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCc
Confidence 111 23355666666666666532 1236667777777776654333 246677777777777766
Q ss_pred CCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhh
Q 045210 680 IPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINN 759 (873)
Q Consensus 680 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 759 (873)
.+..+..+++|++|++++|.+++..|..+...+++|++|++++|++++. | ....+++|+.|++++|++++ +|..+..
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 212 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQS 212 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGG
T ss_pred cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcc
Confidence 6667777777777777777777655555544467777777777777755 2 23347778888888887774 4444655
Q ss_pred hhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCc-ccCCccc
Q 045210 760 LAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS-GRIPVNM 838 (873)
Q Consensus 760 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l 838 (873)
+++| +.|++++|+++ .+|..+..+++|+.|++++|.++ +.+|..+
T Consensus 213 l~~L---------------------------------~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 213 AAGV---------------------------------TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp GTTC---------------------------------SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cCcc---------------------------------cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 5544 67888888877 46777777788888888888887 6677777
Q ss_pred cCCCCCCeEecc-CCccccccccc
Q 045210 839 GAMKSVEALDFS-SNRLQGEIPKN 861 (873)
Q Consensus 839 ~~l~~L~~L~ls-~N~l~g~iP~~ 861 (873)
+.+++|+.++++ .+.+.|..|..
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred hccccceEEECCCchhccCCchhc
Confidence 777777777777 33555555543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=8.1e-25 Score=245.70 Aligned_cols=242 Identities=21% Similarity=0.251 Sum_probs=210.9
Q ss_pred CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210 589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI 668 (873)
Q Consensus 589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 668 (873)
....++.++..++. +|..+ .++++.|++++|++++..|..|.++++|+.|++++|++++..|..|.++++|++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGI------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCC------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCcEEEECCCCcCc-cCCCC------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence 45678888887764 44332 367999999999999999999999999999999999999888899999999999
Q ss_pred EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeC-CcccCCCCCCCEEeCCCC
Q 045210 669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFF-PPELCGLASLKILDLSSN 747 (873)
Q Consensus 669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N 747 (873)
|+|++|++++..+..+..+++|++|++++|++. .+|...+..+++|+.|++++|+..+.+ +..+..+++|+.|++++|
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 999999999888888999999999999999998 566655556999999999996544444 456889999999999999
Q ss_pred ccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCC
Q 045210 748 NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSH 827 (873)
Q Consensus 748 ~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~ 827 (873)
.+++ +| .+..+. +|+.|++++|++++..|..+.++++|+.|++++
T Consensus 207 ~l~~-~~-~~~~l~---------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 207 NIKD-MP-NLTPLV---------------------------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp CCSS-CC-CCTTCT---------------------------------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred cccc-cc-cccccc---------------------------------cccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence 9984 44 244333 458999999999999999999999999999999
Q ss_pred CcCcccCCccccCCCCCCeEeccCCccccccccccccCCCCCcccC
Q 045210 828 NFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873 (873)
Q Consensus 828 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~l~l 873 (873)
|.+++..|..+..+++|+.||+++|++++..|..+..++.|+.|++
T Consensus 252 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 9999999999999999999999999999877778899999998875
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=243.71 Aligned_cols=242 Identities=21% Similarity=0.243 Sum_probs=210.6
Q ss_pred CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210 589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI 668 (873)
Q Consensus 589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 668 (873)
....++.++..++. +|..+ .++++.|++++|++.+..+..|.++++|++|++++|++++..+..|.++++|++
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGI------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCC------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CCCEEEeCCCCcCc-CCCCC------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 45678888888764 44332 367999999999999888899999999999999999999888889999999999
Q ss_pred EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeC-CcccCCCCCCCEEeCCCC
Q 045210 669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFF-PPELCGLASLKILDLSSN 747 (873)
Q Consensus 669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N 747 (873)
|+|++|++++..+..|..+++|++|++++|++. .+|...+..+++|+.|++++|+..+.+ +..+..+++|+.|++++|
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 999999999777778999999999999999998 455544446999999999996544444 457899999999999999
Q ss_pred ccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCC
Q 045210 748 NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSH 827 (873)
Q Consensus 748 ~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~ 827 (873)
.++ .+|. +..+. +|+.|||++|++++..|..+.++++|+.|+|++
T Consensus 196 ~l~-~~~~-~~~l~---------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 196 NLR-EIPN-LTPLI---------------------------------KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp CCS-SCCC-CTTCS---------------------------------SCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCc-cccc-cCCCc---------------------------------ccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 998 5553 44333 458999999999999999999999999999999
Q ss_pred CcCcccCCccccCCCCCCeEeccCCccccccccccccCCCCCcccC
Q 045210 828 NFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873 (873)
Q Consensus 828 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~l~l 873 (873)
|.+++..|..|..+++|+.||+++|++++..|..+..++.|+.|++
T Consensus 241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 9999999999999999999999999999877788899999998875
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.2e-26 Score=246.70 Aligned_cols=238 Identities=23% Similarity=0.284 Sum_probs=162.7
Q ss_pred ecccCccCCCCCCeecCCCCCCCCCCCCcccc-------CCCCCCEEeccCCcCCCCCcccc--cCCCCCcEEECCCCCC
Q 045210 112 KINPSLLGLKHLIHLDLSYNDFQGIQIPRFLG-------SLENLMYLNISRAGFVGIIPHQI--GNLSNLQFLDLRPNYL 182 (873)
Q Consensus 112 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l 182 (873)
.+|..+... |++|+|++|.+....+|..+. .+++|++|++++|.+++.+|..+ +.+++|++|++++|.+
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 344444333 666666666654333555444 56666666666666666666554 5566666666666655
Q ss_pred CCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCC
Q 045210 183 GGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADS 262 (873)
Q Consensus 183 ~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 262 (873)
+.++ ..++.+. ...+++|++|++++|++.+..+..|+++++|++|++++|++. +
T Consensus 134 ~~~~-~~~~~l~------------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 187 (312)
T 1wwl_A 134 ATRD-AWLAELQ------------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-G 187 (312)
T ss_dssp SSSS-SHHHHHH------------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC-H
T ss_pred cchh-HHHHHHH------------------------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC-c
Confidence 5442 1111000 011378888888888888888888889999999999999875 3
Q ss_pred c--hhHhh--cCCCCCcEEEccCCcCCC--CCh-hhhcCCCCCCEEECCCCCCCCCCc-hhhhcCCCcCEEEccCCcCCc
Q 045210 263 S--IVNQV--LGLVNLVFLDLSTNNFQG--AVP-DAIQNSTSLQHLDLSRNHFSSSVP-DWFNKFIDLEYLSLSYNELQG 334 (873)
Q Consensus 263 ~--~~~~~--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~ 334 (873)
. ++..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 3 34444 788899999999998873 222 344678899999999998887664 45566788999999999888
Q ss_pred cCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 045210 335 SIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ 382 (873)
Q Consensus 335 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 382 (873)
.+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6777666 7889999999988876 55 7788877777777777654
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.9e-26 Score=269.65 Aligned_cols=435 Identities=14% Similarity=0.107 Sum_probs=200.4
Q ss_pred cccCCCCCccEEEcCCCCCC-CC-------------chhHhhcCCCCCcEEEccCCcCCCCChhhhc-CCCCCCEEECCC
Q 045210 241 LSFANFSSLVTLDISDNQFA-DS-------------SIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQ-NSTSLQHLDLSR 305 (873)
Q Consensus 241 ~~l~~l~~L~~L~L~~n~l~-~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~ 305 (873)
..+..+++|++|+++++... +. .+......+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 34556677777777766421 00 0112223455666666666665554444443 456666666666
Q ss_pred C-CCCCC-CchhhhcCCCcCEEEccCCcCCccCccccc----CCCCCCEEeCCCCc--CCCc-chhhhhcCCCCCEEEcc
Q 045210 306 N-HFSSS-VPDWFNKFIDLEYLSLSYNELQGSIPGSLG----NLTSIKSLDLSFNR--LESK-IPRAFKRLRHLRSVNLS 376 (873)
Q Consensus 306 n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~L~ 376 (873)
| .++.. ++..+..+++|++|++++|.+++..+.++. .+++|++|++++|. +... ++.....+++|++|+++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 5 33211 233334566666666666665543333332 44566666666554 2111 11222344556666665
Q ss_pred CCcCcchhhHHHHHhhhcccccccEEEccCcc-------cCCccccccCCCCCCCEE-eCCCCccCccccccccCCCCCC
Q 045210 377 GNKLSQEISQVLDMFSACASNVLESLDLSNNT-------LFGLLTNQIGNFKNLDSL-DLSFNNISGHIPLSLGQLSSLR 448 (873)
Q Consensus 377 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~ 448 (873)
+|...+..+..+. .+ +.|++|++..+. +.+ ++..+.++++|+.+ .+.+... +.++..+..+++|+
T Consensus 220 ~~~~~~~l~~~~~---~~--~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~ 292 (594)
T 2p1m_B 220 RAVPLEKLATLLQ---RA--PQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLT 292 (594)
T ss_dssp TTSCHHHHHHHHH---HC--TTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCC
T ss_pred CCCcHHHHHHHHh---cC--CcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCC
Confidence 5522111222211 11 115555543332 111 12234444555544 2222211 12333333344455
Q ss_pred EEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccC
Q 045210 449 YLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSN 528 (873)
Q Consensus 449 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 528 (873)
+|++++|.+++......+..+++|+.|+++ +|.....++.....+++|++|++++
T Consensus 293 ~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~-------------------------~~~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVL-------------------------DYIEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp EEECTTCCCCHHHHHHHHTTCTTCCEEEEE-------------------------GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEEccCCCCCHHHHHHHHhcCCCcCEEeCc-------------------------CccCHHHHHHHHHhCCCCCEEEEec
Confidence 555554443322111122333444444333 3311111223333456666666632
Q ss_pred ---------CCCCcccChhHHhcCCCCcEEeccCcccccccC-Ccc-ccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccC
Q 045210 529 ---------SSISDTIPDRLVKSLSQINYLNLSYNQIFGQIP-DLN-DAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSS 597 (873)
Q Consensus 529 ---------n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 597 (873)
+.+++.....+...+++|++|.+..|.+++... .+. .+++|+.|+++.+...+ .
T Consensus 348 ~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~---------------~ 412 (594)
T 2p1m_B 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA---------------P 412 (594)
T ss_dssp SCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTC---------------C
T ss_pred CcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCC---------------c
Confidence 233333333333445566666555555544322 221 24445555444110000 0
Q ss_pred ccCcCcc-hhhhhhhcccCCCCceEeccCCcccCCCChhhhc-cccCcEEEcCCCcCccCCcccc-cCCCCccEEEccCC
Q 045210 598 NFLSGTL-SRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMN-WSFLFFLHLGENDFTGNLPTSL-GTLSSLQILHLRGN 674 (873)
Q Consensus 598 n~l~~~~-~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~L~~n 674 (873)
+.+++.. ...+...+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 1222110 011111233466777777766 555444444444 6677777777777665444333 45677777777777
Q ss_pred cccccCCc-ccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCC
Q 045210 675 RFSGKIPV-SLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRAN 723 (873)
Q Consensus 675 ~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n 723 (873)
++++.... ....+++|+.|++++|+++......+...++.++...+..+
T Consensus 492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 492 PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 77544333 33446777777777777654434444344566655555444
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4.2e-24 Score=245.35 Aligned_cols=248 Identities=27% Similarity=0.341 Sum_probs=185.5
Q ss_pred CcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCc
Q 045210 519 NHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSN 598 (873)
Q Consensus 519 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 598 (873)
++|+.|++++|.+. .+|. .+++|++|++++|++++. |. .+++|++|++++|.+++. |..+++|+.|++++|
T Consensus 61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~l~~l-~~~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV--LPPGLLELSIFSNPLTHL-PALPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC--CCTTCCEEEECSCCCCCC-CCCCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC--CCCCCCEEECcCCcCCCC-CCCCCCcCEEECCCC
Confidence 56777777777776 4554 356778888888777643 33 567788888888877763 336778888888888
Q ss_pred cCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccc
Q 045210 599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSG 678 (873)
Q Consensus 599 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 678 (873)
++++ +|.. +++|++|++++|++++ +|. ..++|+.|++++|++++ +| ..+++|+.|++++|++++
T Consensus 132 ~l~~-lp~~-------l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 132 QLTS-LPVL-------PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp CCSC-CCCC-------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred CCCc-CCCC-------CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC
Confidence 8776 3322 4778888888888874 343 34678888888888885 55 456888889999988874
Q ss_pred cCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhh
Q 045210 679 KIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCIN 758 (873)
Q Consensus 679 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 758 (873)
+|.. .++|+.|++++|.++ .+|.. +++|+.|++++|++++ +| ..+++|+.|++++|.++ .+|.
T Consensus 196 -l~~~---~~~L~~L~L~~N~l~-~l~~~----~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--- 258 (622)
T 3g06_A 196 -LPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--- 258 (622)
T ss_dssp -CCCC---CTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---
T ss_pred -CCCc---cchhhEEECcCCccc-ccCCC----CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---
Confidence 4443 478888999999888 66642 5788999999998886 55 45688999999999888 5664
Q ss_pred hhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccc
Q 045210 759 NLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNM 838 (873)
Q Consensus 759 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 838 (873)
. +++|+.|++++|+++ .+|..+.++++|+.|+|++|.+++.+|..+
T Consensus 259 ~---------------------------------~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 259 L---------------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp C---------------------------------CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred c---------------------------------cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 1 234588999999998 789889999999999999999998888876
Q ss_pred cCCC
Q 045210 839 GAMK 842 (873)
Q Consensus 839 ~~l~ 842 (873)
..++
T Consensus 305 ~~L~ 308 (622)
T 3g06_A 305 REIT 308 (622)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6554
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-25 Score=239.47 Aligned_cols=248 Identities=21% Similarity=0.221 Sum_probs=202.8
Q ss_pred eccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeCCCCCCC
Q 045210 501 GLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDLSSNSLS 580 (873)
Q Consensus 501 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~ 580 (873)
+++.+.+.......+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc
Confidence 334444333344555667789999999998875 444556778899999999999887665 888889999999999887
Q ss_pred CCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccc
Q 045210 581 GPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSL 660 (873)
Q Consensus 581 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l 660 (873)
+..+ .++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|++++..|..+
T Consensus 94 ~l~~--~~~L~~L~l~~n~l~~~~~~~-------~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 94 ELLV--GPSIETLHAANNNISRVSCSR-------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEE--CTTCCEEECCSSCCSEEEECC-------CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cccC--CCCcCEEECCCCccCCcCccc-------cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 6443 378999999999998765442 6789999999999998888889999999999999999998777776
Q ss_pred c-CCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCC
Q 045210 661 G-TLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASL 739 (873)
Q Consensus 661 ~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 739 (873)
. .+++|++|++++|++++. + ....+++|++|++++|+++ .+|..+.. +++|+.|++++|+++ .+|..+..+++|
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGG-GTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred hhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcc-cCcccEEECcCCccc-chhhHhhcCCCC
Confidence 4 789999999999999866 3 2345899999999999999 46666664 999999999999999 468889999999
Q ss_pred CEEeCCCCccc-cccChhhhhhhcCc
Q 045210 740 KILDLSSNNLT-GVIPRCINNLAGMA 764 (873)
Q Consensus 740 ~~L~Ls~N~l~-~~ip~~l~~l~~L~ 764 (873)
+.|++++|+++ +.+|..++.++.|.
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred CEEEccCCCccCcCHHHHHhccccce
Confidence 99999999999 77888887777664
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2e-25 Score=251.79 Aligned_cols=206 Identities=22% Similarity=0.182 Sum_probs=94.3
Q ss_pred CCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEE
Q 045210 615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD 694 (873)
Q Consensus 615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 694 (873)
+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|+.|++++|.+++..+. .+++|+.|+
T Consensus 57 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~ 126 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIY 126 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEE
T ss_pred CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEE
Confidence 4444444454444443333 4444445555555554442211 14455555555554433332 234445555
Q ss_pred ccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccC-CCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhh
Q 045210 695 ISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELC-GLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKF 773 (873)
Q Consensus 695 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~ 773 (873)
+++|.+++..|..+.. +++|+.|++++|.+++.+|..+. .+++|+.|+|++|.+++..+. ..
T Consensus 127 L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~-------------- 189 (487)
T 3oja_A 127 LANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VV-------------- 189 (487)
T ss_dssp CCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CC--------------
T ss_pred CCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--cc--------------
Confidence 5555554433433332 45555555555555544444443 345555555555555433111 01
Q ss_pred chhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCc
Q 045210 774 FEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNR 853 (873)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~ 853 (873)
++.|+.|||++|.+++ +|..++.+++|+.|++++|.+++ +|..++.+++|+.|++++|+
T Consensus 190 -------------------l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 190 -------------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -------------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCC
T ss_pred -------------------CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCC
Confidence 1223455555555553 33335555555555555555553 44445555555555555555
Q ss_pred cc-cccccccccCCCC
Q 045210 854 LQ-GEIPKNMVNLEFL 868 (873)
Q Consensus 854 l~-g~iP~~l~~l~~L 868 (873)
+. +.+|..+..++.|
T Consensus 249 l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRV 264 (487)
T ss_dssp BCHHHHHHHHTTCHHH
T ss_pred CcCcchHHHHHhCCCC
Confidence 54 4444444444333
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=9.1e-27 Score=272.29 Aligned_cols=430 Identities=14% Similarity=0.075 Sum_probs=219.3
Q ss_pred cEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCC---CC------------hhhhcCCCCCCEEECCCCCCCCCCch
Q 045210 250 VTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQG---AV------------PDAIQNSTSLQHLDLSRNHFSSSVPD 314 (873)
Q Consensus 250 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~------------~~~l~~l~~L~~L~l~~n~l~~~~p~ 314 (873)
+.+++.++... .....+..+++|++|+++++.... .. +.....+++|++|++++|.+++..+.
T Consensus 46 ~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~ 123 (594)
T 2p1m_B 46 RKVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123 (594)
T ss_dssp CEEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred eEEeecccccc--CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence 35566554332 223455667788888888764221 11 11223456666666666665554444
Q ss_pred hhh-cCCCcCEEEccCC-cCCcc-CcccccCCCCCCEEeCCCCcCCCcchhhhh----cCCCCCEEEccCCcCcchhhHH
Q 045210 315 WFN-KFIDLEYLSLSYN-ELQGS-IPGSLGNLTSIKSLDLSFNRLESKIPRAFK----RLRHLRSVNLSGNKLSQEISQV 387 (873)
Q Consensus 315 ~l~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~L~~L~L~~n~l~~~~~~~ 387 (873)
.+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+. .+++|++|++++|. .......
T Consensus 124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~ 202 (594)
T 2p1m_B 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSA 202 (594)
T ss_dssp HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHH
T ss_pred HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHH
Confidence 444 4666666666666 33321 233334566666666666665544333333 33455555555554 1111111
Q ss_pred HHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCcc-------CCcc
Q 045210 388 LDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNN-------LNGT 460 (873)
Q Consensus 388 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~ 460 (873)
+. ..+..+++|++|++++|...+.++..+..+++|++|++..+. +.+
T Consensus 203 l~-------------------------~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~- 256 (594)
T 2p1m_B 203 LE-------------------------RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG- 256 (594)
T ss_dssp HH-------------------------HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-
T ss_pred HH-------------------------HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-
Confidence 11 111223444444444442111234444444444444433321 111
Q ss_pred cChhhhhcccccceEE-cCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhH
Q 045210 461 LSENHFANLTKLVGFD-ASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRL 539 (873)
Q Consensus 461 ~~~~~~~~l~~L~~L~-l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~ 539 (873)
++. .+.++++|+.+. +.+. ....++..+..+++|++|++++|.+.+.....+
T Consensus 257 l~~-~l~~~~~L~~Ls~~~~~--------------------------~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~ 309 (594)
T 2p1m_B 257 LSV-ALSGCKELRCLSGFWDA--------------------------VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL 309 (594)
T ss_dssp HHH-HHHTCTTCCEEECCBTC--------------------------CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHH
T ss_pred HHH-HHhcCCCcccccCCccc--------------------------chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHH
Confidence 111 234444444441 1110 001234444456677777777777655444445
Q ss_pred HhcCCCCcEEeccCcccccccCC-ccccCCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCC
Q 045210 540 VKSLSQINYLNLSYNQIFGQIPD-LNDAAQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRL 618 (873)
Q Consensus 540 ~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L 618 (873)
...+++|++|++++|.....++. ...+++|++|++++|.-.| ....+.+++.....+. ..+++|
T Consensus 310 ~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g------------~~~~~~l~~~~l~~l~---~~~~~L 374 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV------------MEPNVALTEQGLVSVS---MGCPKL 374 (594)
T ss_dssp HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTC------------SSCSSCCCHHHHHHHH---HHCTTC
T ss_pred HhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccc------------cccCCCCCHHHHHHHH---HhchhH
Confidence 55667777777777621112222 2235666666665432110 0112222222212211 125667
Q ss_pred ceEeccCCcccCCCChhhh-ccccCcEEEcC--C----CcCccC-----CcccccCCCCccEEEccCCcccccCCccccc
Q 045210 619 QVLNLGNNTLSGEIPDCWM-NWSFLFFLHLG--E----NDFTGN-----LPTSLGTLSSLQILHLRGNRFSGKIPVSLQN 686 (873)
Q Consensus 619 ~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~l~--~----n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 686 (873)
+.|.++.|.+++..+..+. .+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+..+..
T Consensus 375 ~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~ 453 (594)
T 2p1m_B 375 ESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT 453 (594)
T ss_dssp CEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH
T ss_pred HHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH
Confidence 7776666666654444443 46777777777 3 344411 122245667788888866 555555555554
Q ss_pred -CCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCc-ccCCCCCCCEEeCCCCcccc
Q 045210 687 -CTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPP-ELCGLASLKILDLSSNNLTG 751 (873)
Q Consensus 687 -l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~ 751 (873)
+++|+.|++++|.+++..+..+...+++|+.|++++|++++..+. ....+++|+.|++++|+++.
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 777888888888776655555544578888888888877544332 33456788888888887753
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6.6e-23 Score=212.97 Aligned_cols=181 Identities=25% Similarity=0.303 Sum_probs=80.8
Q ss_pred CCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCC
Q 045210 146 ENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSL 225 (873)
Q Consensus 146 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L 225 (873)
+++++|++++|.+.+..+..++++++|++|++++|.++.++... +..+++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~-----------------------------~~~l~~L 87 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-----------------------------FKELKNL 87 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT-----------------------------TSSCTTC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh-----------------------------hcCCCCC
Confidence 45556666666555554455555556666665555554443321 1223333
Q ss_pred CEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCC
Q 045210 226 ETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSR 305 (873)
Q Consensus 226 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 305 (873)
++|++++|.+.++.+..|.++++|++|++++|.++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 33333333333333334444444444444444443 22222233344444444444444433333344444444444444
Q ss_pred CCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcC
Q 045210 306 NHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356 (873)
Q Consensus 306 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 356 (873)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 444443333344444444444444444433333344444444444444443
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.7e-23 Score=218.44 Aligned_cols=211 Identities=22% Similarity=0.229 Sum_probs=137.5
Q ss_pred CCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEcc
Q 045210 617 RLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS 696 (873)
Q Consensus 617 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 696 (873)
++++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45556666666555555556666666666666666665555556666666666666666666666666666666666666
Q ss_pred CCeecccCChhHHhhcccCcEEEccCCeeeee-CCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhch
Q 045210 697 ENEFVGNIPTWIGERLSGIILLSLRANQFHGF-FPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE 775 (873)
Q Consensus 697 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~ 775 (873)
+|.+.+..+..+. .+++|++|++++|++.+. +|..+..+++|+.|++++|++++..+..+..+..+.
T Consensus 109 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----------- 176 (276)
T 2z62_A 109 ETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------- 176 (276)
T ss_dssp TSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred CCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence 6666643333333 366677777777776653 466777777788888888877766666666666652
Q ss_pred hheeeecccceeccCCCCccce-EEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcc
Q 045210 776 DALIVYKKKVVKYPIGYPYYLK-VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL 854 (873)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~L~-~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 854 (873)
.+. .|++++|.+++..+ ......+|+.|++++|.+++..+..++.+++|+.|++++|++
T Consensus 177 -------------------~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 177 -------------------LLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp -------------------TCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred -------------------ccceeeecCCCcccccCc-cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 112 67888888875433 344445788888888888766555667788888888888888
Q ss_pred ccccc
Q 045210 855 QGEIP 859 (873)
Q Consensus 855 ~g~iP 859 (873)
.+..|
T Consensus 237 ~c~c~ 241 (276)
T 2z62_A 237 DCSCP 241 (276)
T ss_dssp CCCTT
T ss_pred cccCC
Confidence 77654
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.6e-24 Score=241.48 Aligned_cols=222 Identities=21% Similarity=0.191 Sum_probs=192.2
Q ss_pred chhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcc
Q 045210 604 LSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVS 683 (873)
Q Consensus 604 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 683 (873)
+|..+......+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..| +..+++|++|++++|++++..+
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-- 97 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-- 97 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE--
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC--
Confidence 344544444456689999999999999888999999999999999999997666 8999999999999999985443
Q ss_pred cccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhh-hhhc
Q 045210 684 LQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCIN-NLAG 762 (873)
Q Consensus 684 l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~ 762 (873)
.++|++|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+. .++.
T Consensus 98 ---~~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 ---GPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ---CTTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ---CCCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 38999999999999965443 278999999999999999999999999999999999999998888775 5555
Q ss_pred CchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCC
Q 045210 763 MAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMK 842 (873)
Q Consensus 763 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 842 (873)
| +.|+|++|.+++..+ ...+++|++|+|++|.+++. |..++.++
T Consensus 171 L---------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~ 214 (487)
T 3oja_A 171 L---------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAA 214 (487)
T ss_dssp C---------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGT
T ss_pred c---------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCC
Confidence 4 899999999997633 45699999999999999974 55589999
Q ss_pred CCCeEeccCCccccccccccccCCCCCcccC
Q 045210 843 SVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873 (873)
Q Consensus 843 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~l~l 873 (873)
+|+.||+++|++++ +|..+..++.|+.|++
T Consensus 215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred CccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 99999999999996 8989999999998875
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=5.3e-23 Score=214.73 Aligned_cols=224 Identities=23% Similarity=0.223 Sum_probs=184.4
Q ss_pred eCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcC
Q 045210 573 DLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDF 652 (873)
Q Consensus 573 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l 652 (873)
+..+..+.......++++++|++++|.+++..+.. +.++++|++|++++|++++..+..+.++++|++|++++|++
T Consensus 13 ~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp ECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTT----TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EecCCCccccCCCCCCCccEEECCCCcccccCHhH----hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 33444444333334667888888888887765544 45589999999999999988888899999999999999999
Q ss_pred ccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecc-cCChhHHhhcccCcEEEccCCeeeeeCCc
Q 045210 653 TGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVG-NIPTWIGERLSGIILLSLRANQFHGFFPP 731 (873)
Q Consensus 653 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~ 731 (873)
++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|.+.+ .+|..+.. +++|+.|++++|++++..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-CCCCCEEECCCCCCCcCCHH
Confidence 98888889999999999999999998877789999999999999999986 36888875 99999999999999988877
Q ss_pred ccCCCCCCC----EEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCccc
Q 045210 732 ELCGLASLK----ILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS 807 (873)
Q Consensus 732 ~l~~l~~L~----~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 807 (873)
.+..+++|+ .|++++|++++..+..+.. .+|+.|++++|+++
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~----------------------------------~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE----------------------------------IRLKELALDTNQLK 213 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS----------------------------------CCEEEEECCSSCCS
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC----------------------------------CcccEEECCCCcee
Confidence 777777777 8999999998655443321 23589999999999
Q ss_pred ccCChhhhcCCCCCeeeCCCCcCcccCC
Q 045210 808 GEIPSQVTNLVGLQTLKLSHNFFSGRIP 835 (873)
Q Consensus 808 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 835 (873)
+..+..+.++++|++|++++|++++..|
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ecCHhHhcccccccEEEccCCcccccCC
Confidence 7666667999999999999999998765
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2e-23 Score=217.03 Aligned_cols=208 Identities=21% Similarity=0.242 Sum_probs=150.2
Q ss_pred CCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEE
Q 045210 615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD 694 (873)
Q Consensus 615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 694 (873)
+++|+.|++++|.+.. + ..+..+++|++|++++|++.+ + ..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 5667777777777653 2 246777777777777777775 2 3577777788888888877776666677777888888
Q ss_pred ccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhc
Q 045210 695 ISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFF 774 (873)
Q Consensus 695 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~ 774 (873)
+++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..++.+++|
T Consensus 116 L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 183 (272)
T 3rfs_A 116 LVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL----------- 183 (272)
T ss_dssp CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred CCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC-----------
Confidence 888877743333333 37778888888887776666667778888888888888876666556655554
Q ss_pred hhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcc
Q 045210 775 EDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRL 854 (873)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 854 (873)
+.|++++|++++..|..++++++|+.|++++|.+.+..| +|+.++++.|.+
T Consensus 184 ----------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~ 234 (272)
T 3rfs_A 184 ----------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKH 234 (272)
T ss_dssp ----------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHT
T ss_pred ----------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhC
Confidence 778888888887666667788888888888887775543 577778888888
Q ss_pred ccccccccccCCC
Q 045210 855 QGEIPKNMVNLEF 867 (873)
Q Consensus 855 ~g~iP~~l~~l~~ 867 (873)
+|.+|..++++..
T Consensus 235 ~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 235 SGVVRNSAGSVAP 247 (272)
T ss_dssp GGGBBCTTSCBCG
T ss_pred CCcccCcccccCC
Confidence 8888877776654
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.9e-22 Score=208.16 Aligned_cols=203 Identities=20% Similarity=0.254 Sum_probs=115.8
Q ss_pred CceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccC
Q 045210 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE 697 (873)
Q Consensus 618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 697 (873)
.+.+++++++++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|+++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 445555555555 2343332 3455566666665544444555566666666666665544444455566666666666
Q ss_pred CeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhh
Q 045210 698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDA 777 (873)
Q Consensus 698 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~ 777 (873)
|++. .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..++.+++|
T Consensus 95 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------- 159 (270)
T 2o6q_A 95 NKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-------------- 159 (270)
T ss_dssp SCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred CcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc--------------
Confidence 6655 3443333335666666666666665555556666666666666666664443344444443
Q ss_pred eeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccc
Q 045210 778 LIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGE 857 (873)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 857 (873)
+.|++++|++++..|..+.++++|++|++++|.+++..+..++.+++|+.|++++|++...
T Consensus 160 -------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 160 -------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp -------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred -------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 5666666666654445566666666666666666654445566666666666666666543
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=7e-24 Score=233.03 Aligned_cols=238 Identities=20% Similarity=0.292 Sum_probs=179.3
Q ss_pred CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCC---cccCCCChhh-------hccccCcEEEcCCCcCcc---
Q 045210 588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNN---TLSGEIPDCW-------MNWSFLFFLHLGENDFTG--- 654 (873)
Q Consensus 588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~l~~n~l~~--- 654 (873)
++|++|++++|.+++..+..++..+..+++|++|++++| ++.+.+|..+ ..+++|++|++++|++.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 345555666666666555666666677888888888875 4445556554 677888888888888886
Q ss_pred -CCcccccCCCCccEEEccCCcccccCCcccc----cC---------CCCcEEEccCCeec-ccCCh---hHHhhcccCc
Q 045210 655 -NLPTSLGTLSSLQILHLRGNRFSGKIPVSLQ----NC---------TELRLFDISENEFV-GNIPT---WIGERLSGII 716 (873)
Q Consensus 655 -~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~----~l---------~~L~~L~Ls~n~l~-~~ip~---~~~~~l~~L~ 716 (873)
.+|..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|+++ +.+|. .+. .+++|+
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~ 190 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLH 190 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCC
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcC
Confidence 4667778888888888888888754444333 33 88999999999887 44552 333 478999
Q ss_pred EEEccCCeeee-----eCCcccCCCCCCCEEeCCCCccc----cccChhhhhhhcCchhhcchhhhchhheeeeccccee
Q 045210 717 LLSLRANQFHG-----FFPPELCGLASLKILDLSSNNLT----GVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVK 787 (873)
Q Consensus 717 ~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 787 (873)
.|++++|++.. ..|..+..+++|+.|+|++|.++ +.+|..+..+++|
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L------------------------ 246 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL------------------------ 246 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC------------------------
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc------------------------
Confidence 99999998873 34447888899999999999986 5667666655554
Q ss_pred ccCCCCccceEEECCCCccccc----CChhhh--cCCCCCeeeCCCCcCcc----cCCccc-cCCCCCCeEeccCCcccc
Q 045210 788 YPIGYPYYLKVLDLSANYFSGE----IPSQVT--NLVGLQTLKLSHNFFSG----RIPVNM-GAMKSVEALDFSSNRLQG 856 (873)
Q Consensus 788 ~~~~~~~~L~~L~ls~n~l~~~----ip~~l~--~l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~ls~N~l~g 856 (873)
+.|+|++|.+++. +|..+. .+++|++|+|++|.+++ .+|..+ .++++|+.|++++|++++
T Consensus 247 ---------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 247 ---------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp ---------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ---------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 8899999999876 677774 48999999999999998 588887 668999999999999998
Q ss_pred ccc
Q 045210 857 EIP 859 (873)
Q Consensus 857 ~iP 859 (873)
..|
T Consensus 318 ~~~ 320 (386)
T 2ca6_A 318 EDD 320 (386)
T ss_dssp TSH
T ss_pred chh
Confidence 775
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=4.2e-22 Score=208.54 Aligned_cols=203 Identities=20% Similarity=0.192 Sum_probs=150.1
Q ss_pred ccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcE
Q 045210 613 NNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRL 692 (873)
Q Consensus 613 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 692 (873)
++++++++++++++.++ .+|..+. +.++.|++++|++++..|..+..+++|+.|++++|++++..+. +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 34667777777777776 4454443 5677888888887776677777788888888888887754332 67778888
Q ss_pred EEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhh
Q 045210 693 FDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDK 772 (873)
Q Consensus 693 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~ 772 (873)
|++++|+++ .+|..+.. +++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|
T Consensus 82 L~Ls~N~l~-~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------- 150 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL--------- 150 (290)
T ss_dssp EECCSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC---------
T ss_pred EECCCCcCC-cCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC---------
Confidence 888888877 67766654 7888888888888887767778888888888888888886555555555544
Q ss_pred hchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCC
Q 045210 773 FFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSN 852 (873)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 852 (873)
+.|++++|++++..+..+..+++|++|+|++|+++ .+|..+..+.+|+.+++++|
T Consensus 151 ------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 151 ------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp ------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred ------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 77888888888544455677888888888888887 67777777788888888888
Q ss_pred cccc
Q 045210 853 RLQG 856 (873)
Q Consensus 853 ~l~g 856 (873)
++..
T Consensus 206 p~~C 209 (290)
T 1p9a_G 206 PWLC 209 (290)
T ss_dssp CBCC
T ss_pred CccC
Confidence 8764
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.9e-23 Score=221.82 Aligned_cols=232 Identities=18% Similarity=0.165 Sum_probs=168.5
Q ss_pred CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhh--hccccCcEEEcCCCcCccCCc----ccccC
Q 045210 589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCW--MNWSFLFFLHLGENDFTGNLP----TSLGT 662 (873)
Q Consensus 589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~l~~n~l~~~~p----~~l~~ 662 (873)
.++.+.+.++.++...-..+.. ...+++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3555666665554322121111 1124668888888888888888777 788888888888888887555 33456
Q ss_pred CCCccEEEccCCcccccCCcccccCCCCcEEEccCCeeccc--CC-hhHHhhcccCcEEEccCCeeeeeC--Cc-ccCCC
Q 045210 663 LSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGN--IP-TWIGERLSGIILLSLRANQFHGFF--PP-ELCGL 736 (873)
Q Consensus 663 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--ip-~~~~~~l~~L~~L~L~~n~l~~~~--p~-~l~~l 736 (873)
+++|++|++++|++.+..+..++.+++|++|++++|++.+. ++ ......+++|++|++++|+++... +. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 88888888888888888888888888888888888887642 21 111123788888888888886321 11 24677
Q ss_pred CCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhc
Q 045210 737 ASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTN 816 (873)
Q Consensus 737 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~ 816 (873)
++|+.||+++|.+++.+|..++.+.. ++.|+.|++++|+++ .+|..+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~------------------------------~~~L~~L~Ls~N~l~-~lp~~~~- 271 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMW------------------------------SSALNSLNLSFAGLE-QVPKGLP- 271 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCC------------------------------CTTCCCEECCSSCCC-SCCSCCC-
T ss_pred CCCCEEECCCCCCCccchhhHHhccC------------------------------cCcCCEEECCCCCCC-chhhhhc-
Confidence 88999999999998887877765542 234688999999998 7888775
Q ss_pred CCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210 817 LVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG 856 (873)
Q Consensus 817 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 856 (873)
++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 272 -~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred -CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7899999999999963 44 5778899999999999874
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.5e-22 Score=207.61 Aligned_cols=189 Identities=22% Similarity=0.271 Sum_probs=144.6
Q ss_pred cccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCc
Q 045210 612 MNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELR 691 (873)
Q Consensus 612 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 691 (873)
+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 34467788888888877752 3677788888888888888876666677888888888888888877777778888888
Q ss_pred EEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchh
Q 045210 692 LFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVD 771 (873)
Q Consensus 692 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~ 771 (873)
+|++++|.+++ +|...+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..++.+++|
T Consensus 137 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------- 207 (272)
T 3rfs_A 137 YLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL-------- 207 (272)
T ss_dssp EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC--------
T ss_pred EEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC--------
Confidence 88888888874 444433348888888888888887777777888888888888888887777666666655
Q ss_pred hhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCC
Q 045210 772 KFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKS 843 (873)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 843 (873)
+.|++++|.+.+..| .|+.|+++.|.++|.+|.+++.+..
T Consensus 208 -------------------------~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 208 -------------------------QYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -------------------------CEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -------------------------CEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCcccccCC
Confidence 788888888876544 5778888888888888888877654
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.5e-23 Score=227.93 Aligned_cols=183 Identities=22% Similarity=0.239 Sum_probs=85.3
Q ss_pred EEeccCcccccccCCccccC-CCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCC-CCceEeccC
Q 045210 548 YLNLSYNQIFGQIPDLNDAA-QLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSM-RLQVLNLGN 625 (873)
Q Consensus 548 ~L~l~~n~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~-~L~~L~Ls~ 625 (873)
+.+++.|.+++.+|.+...+ +|++|++++|.+. +..+..++..+..++ +|++|++++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~---------------------~~~~~~l~~~l~~~~~~L~~L~Ls~ 60 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY---------------------SISTVELIQAFANTPASVTSLNLSG 60 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG---------------------GSCHHHHHHHHHTCCTTCCEEECCS
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCC---------------------hHHHHHHHHHHHhCCCceeEEECcC
Confidence 35666777776666443332 3555555555554 444433333344444 455555555
Q ss_pred CcccCCCChhhhcc-----ccCcEEEcCCCcCccCCcccc----cCC-CCccEEEccCCcccccCCcccc----c-CCCC
Q 045210 626 NTLSGEIPDCWMNW-----SFLFFLHLGENDFTGNLPTSL----GTL-SSLQILHLRGNRFSGKIPVSLQ----N-CTEL 690 (873)
Q Consensus 626 n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~p~~l~----~-l~~L 690 (873)
|.+++..+..+..+ ++|++|++++|++++..+..+ ..+ ++|++|++++|++++..+..+. . .++|
T Consensus 61 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 140 (362)
T 3goz_A 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence 55554444444443 455555555555544433322 222 4555555555555444333322 1 2355
Q ss_pred cEEEccCCeecccCChhHHh---hcc-cCcEEEccCCeeeeeCCccc----CCC-CCCCEEeCCCCcccc
Q 045210 691 RLFDISENEFVGNIPTWIGE---RLS-GIILLSLRANQFHGFFPPEL----CGL-ASLKILDLSSNNLTG 751 (873)
Q Consensus 691 ~~L~Ls~n~l~~~ip~~~~~---~l~-~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~ 751 (873)
++|++++|.+++..+..+.. ..+ +|++|++++|++++..+..+ ..+ ++|+.|||++|.+++
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 55555555555332222211 122 55555555555544433222 222 355555555555553
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.2e-23 Score=231.12 Aligned_cols=242 Identities=15% Similarity=0.188 Sum_probs=194.3
Q ss_pred cCcCcchhhhhhhcccCCCCceEeccCCcccCCCC----hhhhccccCcEEEcCCC---cCccCCcccc-------cCCC
Q 045210 599 FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP----DCWMNWSFLFFLHLGEN---DFTGNLPTSL-------GTLS 664 (873)
Q Consensus 599 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~l~~n---~l~~~~p~~l-------~~l~ 664 (873)
.++......+...+..+++|+.|++++|.+++..+ ..+..+++|++|++++| ++++.+|..+ ..++
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 33333333444456668999999999999987644 44678999999999996 4556667655 6899
Q ss_pred CccEEEccCCcccc----cCCcccccCCCCcEEEccCCeecccCChhHHhh---c---------ccCcEEEccCCeee-e
Q 045210 665 SLQILHLRGNRFSG----KIPVSLQNCTELRLFDISENEFVGNIPTWIGER---L---------SGIILLSLRANQFH-G 727 (873)
Q Consensus 665 ~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~---l---------~~L~~L~L~~n~l~-~ 727 (873)
+|++|+|++|++.+ .+|..+..+++|++|++++|.+++..+..+... + ++|++|++++|+++ +
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 99999999999997 477788999999999999999986555554432 3 89999999999997 4
Q ss_pred eCC---cccCCCCCCCEEeCCCCcccc-----ccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEE
Q 045210 728 FFP---PELCGLASLKILDLSSNNLTG-----VIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVL 799 (873)
Q Consensus 728 ~~p---~~l~~l~~L~~L~Ls~N~l~~-----~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 799 (873)
.+| ..+..+++|+.|++++|.++. .+|..+..+++ |+.|
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~---------------------------------L~~L 221 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE---------------------------------LKVL 221 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT---------------------------------CCEE
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC---------------------------------ccEE
Confidence 444 467788999999999999972 23324444444 5899
Q ss_pred ECCCCccc----ccCChhhhcCCCCCeeeCCCCcCccc----CCcccc--CCCCCCeEeccCCcccc----cccccc-cc
Q 045210 800 DLSANYFS----GEIPSQVTNLVGLQTLKLSHNFFSGR----IPVNMG--AMKSVEALDFSSNRLQG----EIPKNM-VN 864 (873)
Q Consensus 800 ~ls~n~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~--~l~~L~~L~ls~N~l~g----~iP~~l-~~ 864 (873)
+|++|.++ +.+|..+..+++|++|+|++|.+++. +|..+. .+++|+.|++++|++++ .+|..+ .+
T Consensus 222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 99999997 78899999999999999999999977 677774 49999999999999998 599888 67
Q ss_pred CCCCCcccC
Q 045210 865 LEFLEIFNI 873 (873)
Q Consensus 865 l~~L~~l~l 873 (873)
++.|++|++
T Consensus 302 l~~L~~L~l 310 (386)
T 2ca6_A 302 MPDLLFLEL 310 (386)
T ss_dssp CTTCCEEEC
T ss_pred CCCceEEEc
Confidence 899998875
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=9.2e-23 Score=219.81 Aligned_cols=270 Identities=19% Similarity=0.213 Sum_probs=164.4
Q ss_pred CCCCccceeeEecCCCCcEEEEecCCCCCCCCCchhhhhccccceeeecccCccCC--CCCCeecCCCCCCCCCCCCccc
Q 045210 65 VGDCCKWYGVVCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGL--KHLIHLDLSYNDFQGIQIPRFL 142 (873)
Q Consensus 65 ~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~l 142 (873)
+..|..|.++.|+. ..++.+++++. .+. +..+..+ +++++|++++|.+.+. .+. +
T Consensus 33 ~~vc~~W~~~~~~~--~~~~~l~l~~~----------------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~ 89 (336)
T 2ast_B 33 SGVCKRWYRLASDE--SLWQTLDLTGK----------------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-H 89 (336)
T ss_dssp TSSCHHHHHHHTCS--TTSSEEECTTC----------------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-C
T ss_pred HHHHHHHHHHhcCc--hhheeeccccc----------------cCC---HHHHHhhhhccceEEEcCCcccccc-chh-h
Confidence 34577899988752 34666777664 222 2234444 6677777777766654 232 4
Q ss_pred cCCCCCCEEeccCCcCCCC-CcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccC
Q 045210 143 GSLENLMYLNISRAGFVGI-IPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNS 221 (873)
Q Consensus 143 ~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 221 (873)
..+++|++|++++|.+++. +|..+..+++|++|++++|.
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~---------------------------------------- 129 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR---------------------------------------- 129 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB----------------------------------------
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc----------------------------------------
Confidence 4566666666666665544 45555555555555555543
Q ss_pred CCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCC-CCCCCchhHhhcCCCCCcEEEccCC-cCCCC-ChhhhcCCC-C
Q 045210 222 LHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDN-QFADSSIVNQVLGLVNLVFLDLSTN-NFQGA-VPDAIQNST-S 297 (873)
Q Consensus 222 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~ 297 (873)
+++..+..++++++|++|++++| .+++..++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus 130 -------------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 130 -------------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp -------------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred -------------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 33333445556666666666666 4542245556677777777777777 66643 466677777 7
Q ss_pred CCEEECCCC--CCC-CCCchhhhcCCCcCEEEccCCc-CCccCcccccCCCCCCEEeCCCCc-CCCcchhhhhcCCCCCE
Q 045210 298 LQHLDLSRN--HFS-SSVPDWFNKFIDLEYLSLSYNE-LQGSIPGSLGNLTSIKSLDLSFNR-LESKIPRAFKRLRHLRS 372 (873)
Q Consensus 298 L~~L~l~~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~ 372 (873)
|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..++.+++|++|++++|. +.......+..+++|+.
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 777777777 444 3456666777888888888887 666666677778888888888874 32222235677777777
Q ss_pred EEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccC
Q 045210 373 VNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIG 418 (873)
Q Consensus 373 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 418 (873)
|++++| ++......+. ..++.|++++|.+++..|..++
T Consensus 277 L~l~~~-i~~~~~~~l~-------~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 277 LQVFGI-VPDGTLQLLK-------EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp EECTTS-SCTTCHHHHH-------HHSTTSEESCCCSCCTTCSSCS
T ss_pred EeccCc-cCHHHHHHHH-------hhCcceEEecccCccccCCccc
Confidence 777777 4432222111 1155566666666666555444
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.6e-22 Score=219.70 Aligned_cols=165 Identities=20% Similarity=0.187 Sum_probs=134.0
Q ss_pred EEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCC----hhhhccc-cCcEEEcCCCcCccCCcccccCC---
Q 045210 592 TLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP----DCWMNWS-FLFFLHLGENDFTGNLPTSLGTL--- 663 (873)
Q Consensus 592 ~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l--- 663 (873)
.++++.|.+++.+|..... .++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI----PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS----CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchHHHHHHHhC----CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 4678888999888876433 5669999999999997776 7788888 89999999999998877777664
Q ss_pred --CCccEEEccCCcccccCCcccc----cC-CCCcEEEccCCeecccCChhHHhh----cccCcEEEccCCeeeeeC---
Q 045210 664 --SSLQILHLRGNRFSGKIPVSLQ----NC-TELRLFDISENEFVGNIPTWIGER----LSGIILLSLRANQFHGFF--- 729 (873)
Q Consensus 664 --~~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~Ls~n~l~~~ip~~~~~~----l~~L~~L~L~~n~l~~~~--- 729 (873)
++|++|++++|++++..+..+. .+ ++|++|++++|++++..+..+... .++|++|++++|++.+..
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 9999999999999987776544 44 899999999999997666665542 269999999999998643
Q ss_pred -CcccCCCC-CCCEEeCCCCccccccChhhhhh
Q 045210 730 -PPELCGLA-SLKILDLSSNNLTGVIPRCINNL 760 (873)
Q Consensus 730 -p~~l~~l~-~L~~L~Ls~N~l~~~ip~~l~~l 760 (873)
+..+..++ +|+.|++++|++++..+..+...
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 190 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKF 190 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHH
Confidence 33445555 99999999999998887766543
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.5e-23 Score=221.03 Aligned_cols=188 Identities=19% Similarity=0.205 Sum_probs=92.2
Q ss_pred CCcEEeccCcccccccCCcccc--CCCCeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEe
Q 045210 545 QINYLNLSYNQIFGQIPDLNDA--AQLETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLN 622 (873)
Q Consensus 545 ~L~~L~l~~n~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 622 (873)
.++.++++++.+.. ..+..+ +.++.|++++|.+.+..+.. ..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~~--------------------------~~~~~L~~L~ 99 (336)
T 2ast_B 48 LWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAEH--------------------------FSPFRVQHMD 99 (336)
T ss_dssp TSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCSC--------------------------CCCBCCCEEE
T ss_pred hheeeccccccCCH--HHHHhhhhccceEEEcCCccccccchhh--------------------------ccCCCCCEEE
Confidence 36677777776652 123333 56666666666665544432 1244455555
Q ss_pred ccCCcccCC-CChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCC-cccc-cCCcccccCCCCcEEEccCC-
Q 045210 623 LGNNTLSGE-IPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGN-RFSG-KIPVSLQNCTELRLFDISEN- 698 (873)
Q Consensus 623 Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~Ls~n- 698 (873)
+++|.+++. +|..+..+++|++|++++|++++..|..++.+++|++|++++| .+++ .++..+..+++|++|++++|
T Consensus 100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 555544433 4444445555555555555554444444555555555555555 3443 13344445555555555555
Q ss_pred eeccc-CChhHHhhcc-cCcEEEccCC--eee-eeCCcccCCCCCCCEEeCCCCc-cccccChhhhhhh
Q 045210 699 EFVGN-IPTWIGERLS-GIILLSLRAN--QFH-GFFPPELCGLASLKILDLSSNN-LTGVIPRCINNLA 761 (873)
Q Consensus 699 ~l~~~-ip~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~ 761 (873)
.+++. ++..+.. ++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+..++
T Consensus 180 ~l~~~~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 180 DFTEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp TCCHHHHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CcChHHHHHHHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 44432 3333332 55 5555555555 233 2334444445555555555555 4444444444333
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.5e-20 Score=196.72 Aligned_cols=204 Identities=20% Similarity=0.212 Sum_probs=139.0
Q ss_pred CccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccC
Q 045210 116 SLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSH 195 (873)
Q Consensus 116 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 195 (873)
.+.+++++++++++++.++. +|..+. +++++|++++|.+++..|..+.++++|++|++++|.++.++.. ..
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~ 75 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-----GT 75 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-----SC
T ss_pred cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-----CC
Confidence 36788999999999999885 566554 7899999999999988888999999999999999988876543 56
Q ss_pred CCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCc
Q 045210 196 LSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLV 275 (873)
Q Consensus 196 l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 275 (873)
+++|++|++++|.++.++. .+..+++|++|++++|+++++.+..|.++++|++|++++|
T Consensus 76 l~~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N------------------ 134 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN------------------ 134 (290)
T ss_dssp CTTCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS------------------
T ss_pred CCcCCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC------------------
Confidence 6777777777777665532 3345555555555555555555555555555555555544
Q ss_pred EEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCc
Q 045210 276 FLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNR 355 (873)
Q Consensus 276 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 355 (873)
++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.
T Consensus 135 -------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 135 -------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -------CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred -------CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 444444444555666666666666666444445566666666666666666 556666666677777777776
Q ss_pred CC
Q 045210 356 LE 357 (873)
Q Consensus 356 l~ 357 (873)
+.
T Consensus 207 ~~ 208 (290)
T 1p9a_G 207 WL 208 (290)
T ss_dssp BC
T ss_pred cc
Confidence 64
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.2e-20 Score=193.44 Aligned_cols=181 Identities=21% Similarity=0.235 Sum_probs=120.8
Q ss_pred CCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEc
Q 045210 616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI 695 (873)
Q Consensus 616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 695 (873)
...+.++++++.++ .+|..+. ++++.|++++|++.+..+..+.++++|++|++++|++++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34667777777776 4555443 56777777777777766667777777777777777777766667777777777777
Q ss_pred cCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhch
Q 045210 696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE 775 (873)
Q Consensus 696 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~ 775 (873)
++|+++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..|..++.+++|
T Consensus 91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------ 157 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL------------ 157 (251)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC------------
Confidence 777777 3443333346777777777777765555556666777777777777665544455554444
Q ss_pred hheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCccc
Q 045210 776 DALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR 833 (873)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 833 (873)
+.||+++|++++..|..+..+++|+.|++++|++++.
T Consensus 158 ---------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 158 ---------------------QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---------------------CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5677777776655555666666677777777766655
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=205.09 Aligned_cols=202 Identities=20% Similarity=0.194 Sum_probs=156.6
Q ss_pred CcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCC----hhhhccccCcEEEcCCCcCccCCcccccCCCC
Q 045210 590 LTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP----DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSS 665 (873)
Q Consensus 590 L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 665 (873)
|++|++++|.+++..|..+.. ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..++.+++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred eeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555444443210 447788888888888887655 34457889999999999998888888999999
Q ss_pred ccEEEccCCccccc--C--CcccccCCCCcEEEccCCeecccCCh---hHHhhcccCcEEEccCCeeeeeCCcccCCC--
Q 045210 666 LQILHLRGNRFSGK--I--PVSLQNCTELRLFDISENEFVGNIPT---WIGERLSGIILLSLRANQFHGFFPPELCGL-- 736 (873)
Q Consensus 666 L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~Ls~n~l~~~ip~---~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-- 736 (873)
|++|++++|++.+. + +..+..+++|++|++++|+++ .+|. ++...+++|++|++++|++.+..|+.+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999987652 2 233468899999999999997 3333 344458999999999999999888888777
Q ss_pred -CCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhh
Q 045210 737 -ASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVT 815 (873)
Q Consensus 737 -~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~ 815 (873)
++|+.|++++|+++ .+|..+. + +|+.||+++|++++ +|. +.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~---------------------------------~L~~L~Ls~N~l~~-~~~-~~ 291 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--A---------------------------------KLRVLDLSSNRLNR-APQ-PD 291 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--S---------------------------------CCSCEECCSCCCCS-CCC-TT
T ss_pred cCcCCEEECCCCCCC-chhhhhc--C---------------------------------CCCEEECCCCcCCC-Cch-hh
Confidence 69999999999999 7776552 2 35899999999996 354 68
Q ss_pred cCCCCCeeeCCCCcCcc
Q 045210 816 NLVGLQTLKLSHNFFSG 832 (873)
Q Consensus 816 ~l~~L~~L~Ls~N~l~~ 832 (873)
.+++|+.|++++|+++.
T Consensus 292 ~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 292 ELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSCEECSSTTTSC
T ss_pred hCCCccEEECcCCCCCC
Confidence 88999999999999974
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.1e-21 Score=194.30 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=153.4
Q ss_pred CCCceEeccCCcccCCCChhhhccccCcEEEcCCCc-CccCCcccccCCCCccEEEccC-CcccccCCcccccCCCCcEE
Q 045210 616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGEND-FTGNLPTSLGTLSSLQILHLRG-NRFSGKIPVSLQNCTELRLF 693 (873)
Q Consensus 616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L 693 (873)
+++++|++++|++++..+..+.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 357777777777776666677788888888888886 7655556778888888888887 88887777788888888888
Q ss_pred EccCCeecccCChhHHhhcccCc---EEEccCC-eeeeeCCcccCCCCCCC-EEeCCCCccccccChhhhhhhcCchhhc
Q 045210 694 DISENEFVGNIPTWIGERLSGII---LLSLRAN-QFHGFFPPELCGLASLK-ILDLSSNNLTGVIPRCINNLAGMAKEVL 768 (873)
Q Consensus 694 ~Ls~n~l~~~ip~~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~~~~ 768 (873)
++++|++++ +|. +. .+++|+ .|++++| ++.+..+..+..+++|+ .|++++|.++ .+|......+
T Consensus 111 ~l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~------- 179 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT------- 179 (239)
T ss_dssp EEEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC-------
T ss_pred eCCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC-------
Confidence 888888874 776 43 377887 8999998 88877777788899999 9999999988 6665332222
Q ss_pred chhhhchhheeeecccceeccCCCCccceEEECCCCc-ccccCChhhhcC-CCCCeeeCCCCcCcccCCccccCCCCCCe
Q 045210 769 EVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANY-FSGEIPSQVTNL-VGLQTLKLSHNFFSGRIPVNMGAMKSVEA 846 (873)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 846 (873)
+|+.|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.
T Consensus 180 --------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~ 230 (239)
T 2xwt_C 180 --------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKE 230 (239)
T ss_dssp --------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSE
T ss_pred --------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCce
Confidence 35889999995 886666778888 89999999999998 45554 6788889
Q ss_pred EeccCCc
Q 045210 847 LDFSSNR 853 (873)
Q Consensus 847 L~ls~N~ 853 (873)
|+++++.
T Consensus 231 L~l~~~~ 237 (239)
T 2xwt_C 231 LIARNTW 237 (239)
T ss_dssp EECTTC-
T ss_pred eeccCcc
Confidence 9988774
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=3.1e-21 Score=196.50 Aligned_cols=199 Identities=19% Similarity=0.215 Sum_probs=165.8
Q ss_pred CCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCc-ccccCCcccccCCCCcEEEccC-CeecccCChhH
Q 045210 631 EIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNR-FSGKIPVSLQNCTELRLFDISE-NEFVGNIPTWI 708 (873)
Q Consensus 631 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~ip~~~ 708 (873)
.+|. +. ++|+.|++++|++++..+..+.++++|++|++++|+ +++..+..|.++++|++|++++ |+++ .+|...
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~ 100 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDA 100 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTS
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHH
Confidence 5666 33 489999999999998777789999999999999997 8877777999999999999999 9998 455444
Q ss_pred HhhcccCcEEEccCCeeeeeCCcccCCCCCCC---EEeCCCC-ccccccChhhhhhhcCchhhcchhhhchhheeeeccc
Q 045210 709 GERLSGIILLSLRANQFHGFFPPELCGLASLK---ILDLSSN-NLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKK 784 (873)
Q Consensus 709 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~ 784 (873)
+..+++|++|++++|++++ +|. +..+++|+ .|++++| .+++..+..+..+++|
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L--------------------- 157 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--------------------- 157 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS---------------------
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc---------------------
Confidence 4459999999999999997 665 88899998 9999999 8986666667776665
Q ss_pred ceeccCCCCccce-EEECCCCcccccCChhhhcCCCCCeeeCCCCc-CcccCCccccCC-CCCCeEeccCCccccccccc
Q 045210 785 VVKYPIGYPYYLK-VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNF-FSGRIPVNMGAM-KSVEALDFSSNRLQGEIPKN 861 (873)
Q Consensus 785 ~~~~~~~~~~~L~-~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~L~ls~N~l~g~iP~~ 861 (873)
+ .|++++|+++ .+|......++|+.|++++|+ +++..|..++.+ ++|+.||+++|++++ +|..
T Consensus 158 ------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~ 223 (239)
T 2xwt_C 158 ------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK 223 (239)
T ss_dssp ------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT
T ss_pred ------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh
Confidence 8 9999999999 777766555899999999995 987777889999 999999999999995 5544
Q ss_pred cccCCCCCccc
Q 045210 862 MVNLEFLEIFN 872 (873)
Q Consensus 862 l~~l~~L~~l~ 872 (873)
.+..|+.|+
T Consensus 224 --~~~~L~~L~ 232 (239)
T 2xwt_C 224 --GLEHLKELI 232 (239)
T ss_dssp --TCTTCSEEE
T ss_pred --HhccCceee
Confidence 444555443
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.4e-20 Score=199.17 Aligned_cols=147 Identities=20% Similarity=0.304 Sum_probs=74.5
Q ss_pred CCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCc
Q 045210 587 PSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSL 666 (873)
Q Consensus 587 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 666 (873)
+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|++.+ ++ .+..+++|
T Consensus 40 l~~L~~L~l~~~~i~~l-~-----~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-----GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred cCCcCEEEeeCCCccCc-h-----hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCC
Confidence 34555555555555431 1 12335555555555555553322 5555555555555555553 22 35555555
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCC
Q 045210 667 QILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS 746 (873)
Q Consensus 667 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 746 (873)
+.|++++|++++. +. +..+++|++|++++|.+++ ++. +. .+++|+.|++++|++++..+ +..+++|+.|++++
T Consensus 110 ~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 110 KTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITN-ISP-LA-GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp CEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCc-Ccc-cc-CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence 5555555555532 21 5555555555555555552 332 22 25555555555555554322 45555555555555
Q ss_pred Cccc
Q 045210 747 NNLT 750 (873)
Q Consensus 747 N~l~ 750 (873)
|.++
T Consensus 183 n~l~ 186 (308)
T 1h6u_A 183 NKIS 186 (308)
T ss_dssp SCCC
T ss_pred CccC
Confidence 5555
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=5.3e-20 Score=188.74 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=90.0
Q ss_pred CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210 589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI 668 (873)
Q Consensus 589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 668 (873)
..+.++++++.++. +|..+ .+.++.|++++|.+++..+..+.++++|++|++++|++++..|..+..+++|++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGI------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCC------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCeEEecCCCCccc-cCCCC------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 34555555555543 22211 134556666666665555555555666666666666665555555555566666
Q ss_pred EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210 669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748 (873)
Q Consensus 669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 748 (873)
|++++|++++..+..+..+++|++|++++|+++ .+|...+..+++|+.|++++|++++..+..+..+++|+.|+|++|+
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 666666665555555555566666666666555 3333332235566666666666555444455555666666666666
Q ss_pred cccccChhhhhhhc
Q 045210 749 LTGVIPRCINNLAG 762 (873)
Q Consensus 749 l~~~ip~~l~~l~~ 762 (873)
+++..|..+..+++
T Consensus 167 l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 167 LQSVPHGAFDRLGK 180 (251)
T ss_dssp CSCCCTTTTTTCTT
T ss_pred CCccCHHHHhCCCC
Confidence 65444444444433
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=8.8e-20 Score=192.93 Aligned_cols=195 Identities=22% Similarity=0.324 Sum_probs=113.8
Q ss_pred ccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCC
Q 045210 117 LLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHL 196 (873)
Q Consensus 117 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l 196 (873)
+..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.++ .+.++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-----~~~~l 106 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-----AIAGL 106 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-----GGTTC
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-----hhcCC
Confidence 4467788888888887775 34 46778888888888887776444 777888888888888776653 24556
Q ss_pred CCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcE
Q 045210 197 SLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVF 276 (873)
Q Consensus 197 ~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 276 (873)
++|++|++++|.++..+ .+..+++|++|++++|.+++..+ +..+++|++
T Consensus 107 ~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~---------------------------l~~l~~L~~ 155 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP---------------------------LAGLTNLQY 155 (308)
T ss_dssp TTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG---------------------------GGGCTTCCE
T ss_pred CCCCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc---------------------------ccCCCCccE
Confidence 66666666666655542 13444555555555555444432 444455555
Q ss_pred EEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcC
Q 045210 277 LDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRL 356 (873)
Q Consensus 277 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 356 (873)
|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|++|++++|.+
T Consensus 156 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 156 LSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred EEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence 5555555443222 4555555555555555553222 455555555555555555332 255555555555555555
Q ss_pred CC
Q 045210 357 ES 358 (873)
Q Consensus 357 ~~ 358 (873)
++
T Consensus 230 ~~ 231 (308)
T 1h6u_A 230 TN 231 (308)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.7e-20 Score=212.63 Aligned_cols=195 Identities=26% Similarity=0.322 Sum_probs=116.7
Q ss_pred CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210 589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI 668 (873)
Q Consensus 589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 668 (873)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|+.|++++|++++ +|. +.. +|+.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCE
T ss_pred CccEEEeCCCCCCc-cCHhH------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCE
Confidence 56677777776665 44322 245677777777666 455 345667777777776665 555 443 6677
Q ss_pred EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210 669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748 (873)
Q Consensus 669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 748 (873)
|++++|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|+.|+|++|.
T Consensus 125 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 125 LDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred EECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence 7777776665 444 45666777777776663 555 25666777777776665 454 44 666677777766
Q ss_pred cccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCC
Q 045210 749 LTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHN 828 (873)
Q Consensus 749 l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N 828 (873)
++ .+|. +.. +|.. .+..|+.|+|++|+++ .||..+.++++|+.|+|++|
T Consensus 192 L~-~lp~-~~~--~L~~--------------------------~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 192 LE-SLPA-VPV--RNHH--------------------------SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp CS-SCCC-CC------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred CC-chhh-HHH--hhhc--------------------------ccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 66 5554 332 1100 0122366666666666 46666666666666666666
Q ss_pred cCcccCCccccCCC
Q 045210 829 FFSGRIPVNMGAMK 842 (873)
Q Consensus 829 ~l~~~ip~~l~~l~ 842 (873)
.+++.+|..++.++
T Consensus 241 ~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 241 PLSSRIRESLSQQT 254 (571)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHhh
Confidence 66666666665543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=9.5e-20 Score=181.07 Aligned_cols=195 Identities=21% Similarity=0.235 Sum_probs=116.5
Q ss_pred ceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCC
Q 045210 619 QVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698 (873)
Q Consensus 619 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 698 (873)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555555554 233322 245666666666666544455566666666666666666555555566666666666666
Q ss_pred eecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhhe
Q 045210 699 EFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDAL 778 (873)
Q Consensus 699 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~ 778 (873)
+++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L--------------- 150 (208)
T 2o6s_A 87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL--------------- 150 (208)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC---------------
T ss_pred cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc---------------
Confidence 666 3443332336666666666666665555556667777777777777765444445544443
Q ss_pred eeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccccc
Q 045210 779 IVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEI 858 (873)
Q Consensus 779 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 858 (873)
+.|++++|.+.+. ++.|+.|+++.|.++|.+|.+++.++. +...|...|..
T Consensus 151 ------------------~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~ 201 (208)
T 2o6s_A 151 ------------------QYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKP 201 (208)
T ss_dssp ------------------CEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCB
T ss_pred ------------------cEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCc
Confidence 6677777766643 335667777777777777777666554 55555555554
Q ss_pred ccc
Q 045210 859 PKN 861 (873)
Q Consensus 859 P~~ 861 (873)
+.+
T Consensus 202 ~~~ 204 (208)
T 2o6s_A 202 VRS 204 (208)
T ss_dssp GGG
T ss_pred cee
Confidence 443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.4e-19 Score=179.83 Aligned_cols=181 Identities=19% Similarity=0.207 Sum_probs=156.1
Q ss_pred cEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccC
Q 045210 643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRA 722 (873)
Q Consensus 643 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~ 722 (873)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|+++ .+|...+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 57888888887 566554 468999999999999877778899999999999999999 56665544599999999999
Q ss_pred CeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECC
Q 045210 723 NQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLS 802 (873)
Q Consensus 723 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls 802 (873)
|++++..+..+..+++|+.|++++|.+++..+..+..+++| +.|+++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------~~L~l~ 132 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL---------------------------------KDLRLY 132 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------------------------CEEECC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC---------------------------------CEEECC
Confidence 99998777778999999999999999997766667766665 899999
Q ss_pred CCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccccccccccccCCC
Q 045210 803 ANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEF 867 (873)
Q Consensus 803 ~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~ 867 (873)
+|++++..+..+..+++|++|++++|.+.+. +++|+.|+++.|+++|.+|+.++.+..
T Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 9999976666789999999999999988754 457899999999999999999887764
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2.1e-19 Score=194.10 Aligned_cols=242 Identities=17% Similarity=0.172 Sum_probs=157.2
Q ss_pred CeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCC-hhhhccccCcE-EEc
Q 045210 570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIP-DCWMNWSFLFF-LHL 647 (873)
Q Consensus 570 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~l 647 (873)
++++.+++.++......++++++|++++|+++...+.. |.++++|++|+|++|++.+.+| ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~----f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTS----STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHH----HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666666433335667788888888776543333 4457788888888888766555 45677777654 555
Q ss_pred CCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhc-ccCcEEEccCCeee
Q 045210 648 GENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERL-SGIILLSLRANQFH 726 (873)
Q Consensus 648 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l-~~L~~L~L~~n~l~ 726 (873)
.+|+++...|..|..+++|++|++++|++.+..+..+....++..+++.++.-...+|...+..+ ..++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 66777766677778888888888888888766666666666777777765432235554433334 35777888888877
Q ss_pred eeCCcccCCCCCCCEEeCCCCccccccCh-hhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCc
Q 045210 727 GFFPPELCGLASLKILDLSSNNLTGVIPR-CINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANY 805 (873)
Q Consensus 727 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 805 (873)
. +|......++|+.|++++|+..+.+|. .|+.+++| +.||+|+|+
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L---------------------------------~~LdLs~N~ 213 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP---------------------------------VILDISRTR 213 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC---------------------------------SEEECTTSC
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCccc---------------------------------chhhcCCCC
Confidence 4 444455566788888875444445654 45555554 778888888
Q ss_pred ccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCc
Q 045210 806 FSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNR 853 (873)
Q Consensus 806 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~ 853 (873)
++ .+|. +.+.+|+.|.+.++.-...+|. +.++++|+.++++++.
T Consensus 214 l~-~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 214 IH-SLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp CC-CCCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred cC-ccCh--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 87 4554 2345566666655555556773 6777888888887654
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=3.2e-19 Score=202.18 Aligned_cols=215 Identities=20% Similarity=0.231 Sum_probs=132.1
Q ss_pred CcCCCccCCCCCCc-----cceee-EecCCCCcEEEEecCCCCCCCCCchhhhhccccceeeecccCccCCCCCCeecCC
Q 045210 56 RLASWNNIGVGDCC-----KWYGV-VCDNITGHVLELRLRNPSRDDGSPAEYEAYERSKIVGKINPSLLGLKHLIHLDLS 129 (873)
Q Consensus 56 ~~~~W~~~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~~L~~L~Ls 129 (873)
.+.+|. . +.++| .|.|+ .|.. ++++.+++++. .+.+ +|+.+. ++|++|+|+
T Consensus 32 ~l~~W~-~-~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n----------------~L~~-lp~~l~--~~L~~L~Ls 88 (571)
T 3cvr_A 32 AWDKWE-K-QALPGENRNEAVSLLKECLI--NQFSELQLNRL----------------NLSS-LPDNLP--PQITVLEIT 88 (571)
T ss_dssp HHHHHH-T-TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSS----------------CCSC-CCSCCC--TTCSEEECC
T ss_pred HHHHHh-c-cCCccccccchhhhcccccc--CCccEEEeCCC----------------CCCc-cCHhHc--CCCCEEECc
Confidence 345675 2 45566 69999 7853 57888888885 5555 666553 788999999
Q ss_pred CCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCC
Q 045210 130 YNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDL 209 (873)
Q Consensus 130 ~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l 209 (873)
+|.++. +| +.+++|++|++++|.+++ +|. +.+ +|++|++++|.++.++. .+++|++|++++|.+
T Consensus 89 ~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 89 QNALIS--LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE-------LPALLEYINADNNQL 152 (571)
T ss_dssp SSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCC
T ss_pred CCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC-------cCccccEEeCCCCcc
Confidence 998884 56 457888888888888887 666 655 88888888888877654 356777777777777
Q ss_pred CCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCCh
Q 045210 210 SKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVP 289 (873)
Q Consensus 210 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (873)
+.++. .+++|++|++++|.++++++ |. ++|++|++++|.++ .+|. +.. +|
T Consensus 153 ~~lp~------~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~--~lp~-~~~--~L--------------- 202 (571)
T 3cvr_A 153 TMLPE------LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE--SLPA-VPV--RN--------------- 202 (571)
T ss_dssp SCCCC------CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS--SCCC-CC--------------------
T ss_pred CcCCC------cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC--chhh-HHH--hh---------------
Confidence 66543 35566666666666666433 33 56666666666554 2232 221 33
Q ss_pred hhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccC
Q 045210 290 DAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGN 342 (873)
Q Consensus 290 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 342 (873)
....+.|++|++++|.++ .+|..+..+++|++|++++|.+++.+|..++.
T Consensus 203 --~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 203 --HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred --hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 000011155555555554 34444444555555555555555555544443
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=8.8e-19 Score=189.14 Aligned_cols=237 Identities=18% Similarity=0.167 Sum_probs=184.5
Q ss_pred cEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCc-ccccCCCCccE-
Q 045210 591 TTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLP-TSLGTLSSLQI- 668 (873)
Q Consensus 591 ~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~- 668 (873)
+.++.++++++. +|..+ .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| ..|.++++++.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 578888888874 45432 3579999999999996666789999999999999999987666 46788988875
Q ss_pred EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccC-CeeeeeCCcccCCCC-CCCEEeCCC
Q 045210 669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRA-NQFHGFFPPELCGLA-SLKILDLSS 746 (873)
Q Consensus 669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~Ls~ 746 (873)
+.+++|+++...|..|..+++|++|++++|++.+ +|...+....++..+++.+ +++....+..+..+. .++.|++++
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 6677899998889999999999999999999984 5544333367788899876 456655556666664 689999999
Q ss_pred CccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCCh-hhhcCCCCCeeeC
Q 045210 747 NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPS-QVTNLVGLQTLKL 825 (873)
Q Consensus 747 N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~-~l~~l~~L~~L~L 825 (873)
|.++ .+|.......+ ++.|++++|+..+.||. .++.+++|++|||
T Consensus 164 N~i~-~i~~~~f~~~~---------------------------------L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 164 NGIQ-EIHNSAFNGTQ---------------------------------LDELNLSDNNNLEELPNDVFHGASGPVILDI 209 (350)
T ss_dssp SCCC-EECTTSSTTEE---------------------------------EEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred cccc-CCChhhccccc---------------------------------hhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence 9998 55554333333 48899986554457775 5799999999999
Q ss_pred CCCcCcccCCccccCCCCCCeEeccCCccccccccccccCCCCCcccC
Q 045210 826 SHNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNLEFLEIFNI 873 (873)
Q Consensus 826 s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~l~l 873 (873)
++|+++ .+|.. .+.+|+.|.+.++.-...+| .+.+|+.|+.+++
T Consensus 210 s~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l 253 (350)
T 4ay9_X 210 SRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASL 253 (350)
T ss_dssp TTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEEC
T ss_pred CCCCcC-ccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcC
Confidence 999999 56653 46677888877777677888 4888888887764
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=171.02 Aligned_cols=115 Identities=22% Similarity=0.224 Sum_probs=59.6
Q ss_pred cEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCC-cccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEcc
Q 045210 643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIP-VSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLR 721 (873)
Q Consensus 643 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~ 721 (873)
+.+++++|.++ .+|..+. +.++.|++++|++++..+ ..|..+++|++|++++|++++..|..+. .+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECC
Confidence 46777777766 3555443 345666666666665543 3355556666666666655533332333 24555555555
Q ss_pred CCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhh
Q 045210 722 ANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLA 761 (873)
Q Consensus 722 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 761 (873)
+|++++..|..+..+++|+.|+|++|.+++..|..+..++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 129 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS 129 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc
Confidence 5555444444444455555555555555544444444333
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=4.3e-21 Score=219.03 Aligned_cols=204 Identities=20% Similarity=0.156 Sum_probs=154.6
Q ss_pred ccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCc-------------CccCCcccccCCCCccEEE-ccCCcccc
Q 045210 613 NNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGEND-------------FTGNLPTSLGTLSSLQILH-LRGNRFSG 678 (873)
Q Consensus 613 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~ 678 (873)
..++.|+.|++++|++. .+|..++.+++|+.|++++|. ..+.+|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34667778888888776 677778888888888876664 3344445555555555555 4444321
Q ss_pred cCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhh
Q 045210 679 KIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCIN 758 (873)
Q Consensus 679 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 758 (873)
.|+.+.+++|.++. +| ...|+.|++++|++++ +|. ++.+++|+.|+|++|.++ .+|..++
T Consensus 424 ----------~L~~l~l~~n~i~~-l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK-ME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHH-HH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ----------hhhhhhhhcccccc-cC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 23334444444441 11 2468899999999986 565 899999999999999999 8898888
Q ss_pred hhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccC-Ccc
Q 045210 759 NLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI-PVN 837 (873)
Q Consensus 759 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~ 837 (873)
.+++| +.|+|++|++++ +| .++++++|++|+|++|.+++.+ |..
T Consensus 484 ~l~~L---------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~ 528 (567)
T 1dce_A 484 ALRCL---------------------------------EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQP 528 (567)
T ss_dssp GCTTC---------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred cCCCC---------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH
Confidence 87776 899999999996 78 8999999999999999999887 999
Q ss_pred ccCCCCCCeEeccCCccccccccc---cccCCCCCcccC
Q 045210 838 MGAMKSVEALDFSSNRLQGEIPKN---MVNLEFLEIFNI 873 (873)
Q Consensus 838 l~~l~~L~~L~ls~N~l~g~iP~~---l~~l~~L~~l~l 873 (873)
++.+++|+.|++++|++++.+|.. +..++.|++||+
T Consensus 529 l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred HhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999999999999876643 345888988875
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.4e-18 Score=180.17 Aligned_cols=171 Identities=24% Similarity=0.370 Sum_probs=83.5
Q ss_pred ccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcE
Q 045210 638 NWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIIL 717 (873)
Q Consensus 638 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 717 (873)
.+++|+.|++++|.+.. ++ .+..+++|+.|++++|++++..+ +..+++|++|++++|.+++ +|. +. .+++|+.
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LK-DLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GT-TCTTCCE
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hc-cCCCCCE
Confidence 44445555555555442 22 24445555555555555543322 4455555555555555542 222 22 2555555
Q ss_pred EEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccce
Q 045210 718 LSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLK 797 (873)
Q Consensus 718 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 797 (873)
|++++|++.+. +.+..+++|+.|++++|.+++. ..++.+++| +
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L---------------------------------~ 159 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL---------------------------------D 159 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC---------------------------------S
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC---------------------------------C
Confidence 55555555432 3445555555555555555532 233333322 5
Q ss_pred EEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210 798 VLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG 856 (873)
Q Consensus 798 ~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 856 (873)
.|++++|++++..| +..+++|++|++++|.+++ +| .+..+++|+.|++++|+++.
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 55555555554332 5555555555555555553 23 25555555555555555543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.2e-17 Score=191.55 Aligned_cols=203 Identities=20% Similarity=0.286 Sum_probs=128.9
Q ss_pred CCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEE
Q 045210 615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD 694 (873)
Q Consensus 615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 694 (873)
+++|+.|++++|.+.. +| .+..+++|+.|+|++|++.+..| +..+++|+.|+|++|++.+ +| .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 5667777777777663 33 46677777777777777775433 6677777777777777764 22 567777777777
Q ss_pred ccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhc
Q 045210 695 ISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFF 774 (873)
Q Consensus 695 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~ 774 (873)
|++|++.+ +| .+. .+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+++..| +..+++|
T Consensus 116 Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L----------- 177 (605)
T 1m9s_A 116 LEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL----------- 177 (605)
T ss_dssp CTTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC-----------
T ss_pred ecCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC-----------
Confidence 77777763 43 333 377777777777777754 566777777777777777776554 4444443
Q ss_pred hhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccC---------Cccc----cCC
Q 045210 775 EDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI---------PVNM----GAM 841 (873)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i---------p~~l----~~l 841 (873)
+.|+|++|++++ + +.+..+++|+.|+|++|++++.- |..+ +..
T Consensus 178 ----------------------~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~ 233 (605)
T 1m9s_A 178 ----------------------QNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233 (605)
T ss_dssp ----------------------CEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCB
T ss_pred ----------------------CEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCC
Confidence 677777777775 3 35777777777777777776542 2222 122
Q ss_pred CCCCeEeccCCccccccccccccC
Q 045210 842 KSVEALDFSSNRLQGEIPKNMVNL 865 (873)
Q Consensus 842 ~~L~~L~ls~N~l~g~iP~~l~~l 865 (873)
...+.+...++...|.+|..+..+
T Consensus 234 ~~~~~i~~~g~~~~~~i~~~l~~~ 257 (605)
T 1m9s_A 234 VTPEIISDDGDYEKPNVKWHLPEF 257 (605)
T ss_dssp CCCSEESTTCEEETTEEECCCSSC
T ss_pred cCchhcccCCcccCCcceeccccc
Confidence 233444445555556666555443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2.6e-18 Score=197.15 Aligned_cols=193 Identities=23% Similarity=0.322 Sum_probs=163.6
Q ss_pred CCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEc
Q 045210 616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI 695 (873)
Q Consensus 616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 695 (873)
..+..+.+..+.+.+..+ +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|++.+..| +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 345666777777776544 5788999999999999984 44 58999999999999999997655 899999999999
Q ss_pred cCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhch
Q 045210 696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFE 775 (873)
Q Consensus 696 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~ 775 (873)
++|.+.+ +| .+.. +++|+.|+|++|++.+. +.+..+++|+.|+|++|.+++. ..++.+++
T Consensus 95 s~N~l~~-l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~------------- 154 (605)
T 1m9s_A 95 DENKIKD-LS-SLKD-LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTK------------- 154 (605)
T ss_dssp CSSCCCC-CT-TSTT-CTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTT-------------
T ss_pred cCCCCCC-Ch-hhcc-CCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCC-------------
Confidence 9999984 55 4554 99999999999999864 5689999999999999999864 45555554
Q ss_pred hheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210 776 DALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ 855 (873)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 855 (873)
|+.|+|++|.+++..| +..+++|+.|+|++|.+++. | .+..+++|+.|+|++|+++
T Consensus 155 --------------------L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 155 --------------------LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp --------------------CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEE
T ss_pred --------------------CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCc
Confidence 4899999999998766 99999999999999999974 4 6899999999999999998
Q ss_pred ccc
Q 045210 856 GEI 858 (873)
Q Consensus 856 g~i 858 (873)
+..
T Consensus 211 ~~p 213 (605)
T 1m9s_A 211 NKP 213 (605)
T ss_dssp CCC
T ss_pred CCc
Confidence 753
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=4.3e-17 Score=162.91 Aligned_cols=153 Identities=22% Similarity=0.290 Sum_probs=104.0
Q ss_pred cEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccC
Q 045210 643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRA 722 (873)
Q Consensus 643 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~ 722 (873)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|++|++++|++++..|..+.. +++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCC
Confidence 56788888877 5666554 67888888888888777777777778888888887777555555553 67777777777
Q ss_pred CeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECC
Q 045210 723 NQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLS 802 (873)
Q Consensus 723 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls 802 (873)
|++++..+..+..+++|+.|+|++|.+++..|..|..+++| +.|+|+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------~~L~L~ 136 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL---------------------------------NLLSLY 136 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------------------------CEEECC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC---------------------------------CEEECC
Confidence 77765544445666677777777777666666555555444 566666
Q ss_pred CCcccccCChhhhcCCCCCeeeCCCCcCcc
Q 045210 803 ANYFSGEIPSQVTNLVGLQTLKLSHNFFSG 832 (873)
Q Consensus 803 ~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 832 (873)
+|++++..+..+..+++|++|+|++|++..
T Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 666665555556666666666666666654
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=7.7e-17 Score=162.24 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=107.4
Q ss_pred cCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEc
Q 045210 641 FLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSL 720 (873)
Q Consensus 641 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L 720 (873)
+-+.++.+++.+. .+|..+. ++|+.|++++|++++..|..|..+++|++|++++|++. .+|...+..+++|+.|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEEC
Confidence 3567888888887 5676554 78888888888888887888888888888888888886 566554444777777777
Q ss_pred cCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEE
Q 045210 721 RANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLD 800 (873)
Q Consensus 721 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 800 (873)
++|++++..+..+..+++|+.|++++|.++ .+|..+..+++| +.|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L---------------------------------~~L~ 141 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL---------------------------------THLA 141 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC---------------------------------SEEE
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC---------------------------------CEEE
Confidence 777777655555666677777777777666 556555544443 5666
Q ss_pred CCCCcccccCChhhhcCCCCCeeeCCCCcCcccC
Q 045210 801 LSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRI 834 (873)
Q Consensus 801 ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 834 (873)
+++|++++..+..+..+++|+.|++++|.+.+..
T Consensus 142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 6666666544455666666666666666666544
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.1e-18 Score=201.86 Aligned_cols=194 Identities=17% Similarity=0.196 Sum_probs=128.2
Q ss_pred EeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCee
Q 045210 621 LNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEF 700 (873)
Q Consensus 621 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 700 (873)
++++.|.+. ..|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|+++ .+|..++++++|++|+|++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 344555555 56788999999999999999998 68877889999999999999999 8899999999999999999999
Q ss_pred cccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheee
Q 045210 701 VGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIV 780 (873)
Q Consensus 701 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~ 780 (873)
+ .+|..+.. +++|++|+|++|.++ .+|..++.+++|+.|+|++|++++.+|..+..+...
T Consensus 283 ~-~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~----------------- 342 (727)
T 4b8c_D 283 T-SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT----------------- 342 (727)
T ss_dssp S-SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH-----------------
T ss_pred C-ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh-----------------
Confidence 9 89999876 999999999999997 788889999999999999999999999988765432
Q ss_pred ecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCC--------cCcccCCccccCCCCCCeEeccCC
Q 045210 781 YKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHN--------FFSGRIPVNMGAMKSVEALDFSSN 852 (873)
Q Consensus 781 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~l~~L~~L~ls~N 852 (873)
...+++++|.++|.+|.+ |+.|++++| .+.+.++..+..+..+....+++|
T Consensus 343 ---------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~N 401 (727)
T 4b8c_D 343 ---------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYN 401 (727)
T ss_dssp ---------------HHHHHHHHCCCCCCCCCC-----------------------------------------------
T ss_pred ---------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecc
Confidence 124778899999988865 445667776 445555555667777888889999
Q ss_pred cccccc
Q 045210 853 RLQGEI 858 (873)
Q Consensus 853 ~l~g~i 858 (873)
-+.+..
T Consensus 402 il~~~~ 407 (727)
T 4b8c_D 402 TLCQHY 407 (727)
T ss_dssp CCCGGG
T ss_pred cccccc
Confidence 886443
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=6.2e-17 Score=161.72 Aligned_cols=137 Identities=20% Similarity=0.151 Sum_probs=107.1
Q ss_pred CCceEeccCCcccCCCC-hhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEc
Q 045210 617 RLQVLNLGNNTLSGEIP-DCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI 695 (873)
Q Consensus 617 ~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 695 (873)
.+++|++++|++++..| ..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 35667777777765543 44677778888888888887766667788888888888888888777777888888888888
Q ss_pred cCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccC
Q 045210 696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP 754 (873)
Q Consensus 696 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 754 (873)
++|++++..|..+.. +++|+.|++++|++++..|..+..+++|+.|++++|++++..+
T Consensus 113 s~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 113 RSNRITCVGNDSFIG-LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSCCCCBCTTSSTT-CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCcCCeECHhHcCC-CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 888888666666654 8888888888888888888888899999999999999987654
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=3.3e-17 Score=177.47 Aligned_cols=181 Identities=21% Similarity=0.220 Sum_probs=134.0
Q ss_pred ceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCccccc-CCCCccEEEccCCcccccCCcccccCCCCcEEEccC
Q 045210 619 QVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLG-TLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE 697 (873)
Q Consensus 619 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 697 (873)
+.++++++.++ .+|..+. ..++.|++++|++++..+..+. ++++|+.|+|++|++++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 67888888887 4665543 4578899999988877777776 888899999999988887778888888888999988
Q ss_pred CeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhh
Q 045210 698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDA 777 (873)
Q Consensus 698 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~ 777 (873)
|++++ +|...+..+++|+.|+|++|++.+..|..+..+++|+.|+|++|.+++..+..+..+..
T Consensus 98 N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~--------------- 161 (361)
T 2xot_A 98 NHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK--------------- 161 (361)
T ss_dssp SCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-------------------
T ss_pred CcCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc---------------
Confidence 88874 44443345888888888888888888888888888888888888888433333321111
Q ss_pred eeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCC--CCeeeCCCCcCccc
Q 045210 778 LIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVG--LQTLKLSHNFFSGR 833 (873)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~--L~~L~Ls~N~l~~~ 833 (873)
+++|+.|||++|++++..+..+..++. ++.|+|++|++...
T Consensus 162 ---------------l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 162 ---------------LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp ---------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ---------------CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 234578888888888544466777776 37788888887643
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.8e-16 Score=165.93 Aligned_cols=150 Identities=25% Similarity=0.371 Sum_probs=95.7
Q ss_pred cCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCC
Q 045210 220 NSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQ 299 (873)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 299 (873)
..+++|++|++++|.+++..+ +.++++|++|++++|.+++ .+.+..+++|++|++++|++++. ..+..+++|+
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~ 137 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 137 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence 445555555555565555544 6666677777777776652 23366667777777777776643 3566677777
Q ss_pred EEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCc
Q 045210 300 HLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNK 379 (873)
Q Consensus 300 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 379 (873)
+|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|+
T Consensus 138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEE
T ss_pred EEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCc
Confidence 777777777643 456677777777777777765433 66777777777777777653 2 36666666666666665
Q ss_pred Ccc
Q 045210 380 LSQ 382 (873)
Q Consensus 380 l~~ 382 (873)
++.
T Consensus 212 i~~ 214 (291)
T 1h6t_A 212 CLN 214 (291)
T ss_dssp EEC
T ss_pred ccC
Confidence 543
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=4.3e-17 Score=160.07 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=105.7
Q ss_pred CCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCE
Q 045210 662 TLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKI 741 (873)
Q Consensus 662 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 741 (873)
.+++|+.|++++|.++ .+| .+..+++|++|++++|.+. . +..+.. +++|++|++++|++++..|..+..+++|+.
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISG-LSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTT-CTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhc-CCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3445555555555555 333 3555566666666666443 2 223443 677777777777777767777888888888
Q ss_pred EeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCC
Q 045210 742 LDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQ 821 (873)
Q Consensus 742 L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~ 821 (873)
|++++|.+++..|..++.+++| +.|++++|++.+.+| .+..+++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L---------------------------------~~L~L~~n~~i~~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKV---------------------------------NSIDLSYNGAITDIM-PLKTLPELK 162 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSC---------------------------------CEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred EEecCCccCcHhHHHHhhCCCC---------------------------------CEEEccCCCCccccH-hhcCCCCCC
Confidence 8888888887777777666555 788888888444566 688888899
Q ss_pred eeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210 822 TLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG 856 (873)
Q Consensus 822 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 856 (873)
+|++++|.+++ +| .+..+++|+.|++++|++.+
T Consensus 163 ~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 163 SLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred EEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 99999998885 44 67888889999999988764
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=8.7e-17 Score=160.68 Aligned_cols=153 Identities=22% Similarity=0.296 Sum_probs=134.2
Q ss_pred ceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCC
Q 045210 619 QVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698 (873)
Q Consensus 619 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 698 (873)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|+.|+|++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 67899999888 5666554 68999999999999877778999999999999999999988999999999999999999
Q ss_pred eecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhhe
Q 045210 699 EFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDAL 778 (873)
Q Consensus 699 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~ 778 (873)
+++ .+|...+..+++|+.|++++|++++..|..+..+++|+.|+|++|++++..+..+..+++|
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------------- 154 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI--------------- 154 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC---------------
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC---------------
Confidence 998 6787766669999999999999999889999999999999999999997777677766655
Q ss_pred eeecccceeccCCCCccceEEECCCCcccc
Q 045210 779 IVYKKKVVKYPIGYPYYLKVLDLSANYFSG 808 (873)
Q Consensus 779 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 808 (873)
+.|++++|.+..
T Consensus 155 ------------------~~L~L~~N~~~c 166 (220)
T 2v9t_B 155 ------------------QTMHLAQNPFIC 166 (220)
T ss_dssp ------------------CEEECCSSCEEC
T ss_pred ------------------CEEEeCCCCcCC
Confidence 789999999874
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=3.4e-17 Score=177.35 Aligned_cols=179 Identities=23% Similarity=0.241 Sum_probs=148.0
Q ss_pred CeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCC
Q 045210 570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGE 649 (873)
Q Consensus 570 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 649 (873)
+.++++++.+.......+..++.|++++|.+++..+..+. ..+++|+.|++++|++++..+..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~---~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSS---SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhh---hcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 5677777776654444567788888888888876655432 1588999999999999988888899999999999999
Q ss_pred CcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHH---hhcccCcEEEccCCeee
Q 045210 650 NDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIG---ERLSGIILLSLRANQFH 726 (873)
Q Consensus 650 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~---~~l~~L~~L~L~~n~l~ 726 (873)
|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+++ .+|...+ ..+++|+.|++++|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9999877778999999999999999999888999999999999999999998 6887764 34899999999999999
Q ss_pred eeCCcccCCCCC--CCEEeCCCCccccc
Q 045210 727 GFFPPELCGLAS--LKILDLSSNNLTGV 752 (873)
Q Consensus 727 ~~~p~~l~~l~~--L~~L~Ls~N~l~~~ 752 (873)
+..+..+..++. ++.|+|++|++...
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCC
Confidence 766667777776 48899999999854
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=2.3e-16 Score=158.76 Aligned_cols=137 Identities=21% Similarity=0.208 Sum_probs=119.0
Q ss_pred CCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEc
Q 045210 616 MRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDI 695 (873)
Q Consensus 616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 695 (873)
++|+.|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..|..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 56888888888888877888888889999999999987665566788999999999999998777777889999999999
Q ss_pred cCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccC
Q 045210 696 SENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP 754 (873)
Q Consensus 696 s~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 754 (873)
++|+++ .+|..+.. +++|+.|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 120 s~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999998 88888865 9999999999999997777788999999999999999997654
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=5.9e-19 Score=201.35 Aligned_cols=201 Identities=19% Similarity=0.195 Sum_probs=152.7
Q ss_pred CCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCc-------------ccCCCChhhhccccCcEEE-cCCCcCc
Q 045210 588 SSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNT-------------LSGEIPDCWMNWSFLFFLH-LGENDFT 653 (873)
Q Consensus 588 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-l~~n~l~ 653 (873)
+.|+.|++++|.++ .+|..+ +++++|+.|++++|. ..+.+|..++.+++|+.|+ ++.|.+
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~~i----~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQSEL----ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL- 422 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHHHH----HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred ccceeccCChhhHH-hhHHHH----HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence 45666666666664 455544 448888999887765 5677888899999999998 666654
Q ss_pred cCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCccc
Q 045210 654 GNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPEL 733 (873)
Q Consensus 654 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l 733 (873)
..|+.+.+++|.++...+ ..|+.|++++|.+++ +|. +.. +++|+.|++++|+++ .+|..+
T Consensus 423 ----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~-l~~L~~L~Ls~N~l~-~lp~~~ 482 (567)
T 1dce_A 423 ----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ-LLLVTHLDLSHNRLR-ALPPAL 482 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG-GTTCCEEECCSSCCC-CCCGGG
T ss_pred ----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc-cccCcEeecCccccc-ccchhh
Confidence 345666777777764322 247888888888884 776 554 888899999998888 778888
Q ss_pred CCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccC-Ch
Q 045210 734 CGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEI-PS 812 (873)
Q Consensus 734 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~i-p~ 812 (873)
+.+++|+.|+|++|.+++ +| .++.+++| +.|+|++|++++.+ |.
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L---------------------------------~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRL---------------------------------QELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSC---------------------------------CEEECCSSCCCSSSTTG
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCC---------------------------------cEEECCCCCCCCCCCcH
Confidence 899999999999999986 66 66666655 78999999999876 89
Q ss_pred hhhcCCCCCeeeCCCCcCcccCCcc---ccCCCCCCeEec
Q 045210 813 QVTNLVGLQTLKLSHNFFSGRIPVN---MGAMKSVEALDF 849 (873)
Q Consensus 813 ~l~~l~~L~~L~Ls~N~l~~~ip~~---l~~l~~L~~L~l 849 (873)
.++.+++|+.|+|++|++++..|.. +..+++|+.||+
T Consensus 528 ~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999999998765532 223788888874
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4.9e-17 Score=167.29 Aligned_cols=170 Identities=21% Similarity=0.271 Sum_probs=118.4
Q ss_pred CCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEE
Q 045210 615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFD 694 (873)
Q Consensus 615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 694 (873)
+.++..++++++.+++.. .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455777788888887443 5778888888888888887 355 57778888888888888875544 77888888888
Q ss_pred ccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhc
Q 045210 695 ISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFF 774 (873)
Q Consensus 695 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~ 774 (873)
+++|++++ +|... .++|+.|++++|++++. +.+..+++|+.|++++|++++. | .++.+++|
T Consensus 92 L~~N~l~~-l~~~~---~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L----------- 152 (263)
T 1xeu_A 92 VNRNRLKN-LNGIP---SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL----------- 152 (263)
T ss_dssp CCSSCCSC-CTTCC---CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC-----------
T ss_pred CCCCccCC-cCccc---cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCC-----------
Confidence 88888873 55422 16777777777777653 3466777777777777777643 3 34444333
Q ss_pred hhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCccc
Q 045210 775 EDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR 833 (873)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 833 (873)
+.|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 153 ----------------------~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 153 ----------------------EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ----------------------CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ----------------------CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 6777777777754 5567777777777777777654
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=9.9e-17 Score=157.49 Aligned_cols=155 Identities=14% Similarity=0.188 Sum_probs=98.9
Q ss_pred hccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCc
Q 045210 637 MNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGII 716 (873)
Q Consensus 637 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~ 716 (873)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..+.. +++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC-CCCCC
Confidence 45556666666666665 344 4556666666666666443 2235566666666666666666555555553 66666
Q ss_pred EEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccc
Q 045210 717 LLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYL 796 (873)
Q Consensus 717 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 796 (873)
+|++++|++++..|..+..+++|+.|++++|++.+.+| .+..+++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L--------------------------------- 161 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL--------------------------------- 161 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC---------------------------------
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCC---------------------------------
Confidence 66666666666666667777788888888887333555 45544443
Q ss_pred eEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcc
Q 045210 797 KVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSG 832 (873)
Q Consensus 797 ~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 832 (873)
+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 162 ~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 162 KSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 788888888875 44 67888888888888888764
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=4.5e-17 Score=167.62 Aligned_cols=146 Identities=23% Similarity=0.286 Sum_probs=81.7
Q ss_pred CCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccE
Q 045210 589 SLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQI 668 (873)
Q Consensus 589 ~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 668 (873)
.+..++++++.+++..+ +..+++|+.|++++|.++. +| .+..+++|+.|++++|++++..+ +..+++|+.
T Consensus 20 ~l~~l~l~~~~i~~~~~------~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVS------QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHTCSCTTSEEC------HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHhcCCCcccccc------hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 34445555555554321 2225566666666666652 33 45666666666666666664332 666666666
Q ss_pred EEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCc
Q 045210 669 LHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNN 748 (873)
Q Consensus 669 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 748 (873)
|++++|++++ +|.. .. ++|++|++++|++++ +| .+. .+++|+.|++++|++++. + .+..+++|+.|++++|+
T Consensus 90 L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~-~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLI-HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGT-TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSC
T ss_pred EECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhc-CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCc
Confidence 6666666654 2221 22 566666666666653 33 233 266666666666666643 2 45566666666666666
Q ss_pred cccc
Q 045210 749 LTGV 752 (873)
Q Consensus 749 l~~~ 752 (873)
+++.
T Consensus 162 i~~~ 165 (263)
T 1xeu_A 162 ITNT 165 (263)
T ss_dssp CCBC
T ss_pred Ccch
Confidence 6643
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.1e-17 Score=194.86 Aligned_cols=162 Identities=19% Similarity=0.195 Sum_probs=123.8
Q ss_pred EcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCee
Q 045210 646 HLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQF 725 (873)
Q Consensus 646 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l 725 (873)
++.+|.+. ..|..+..+++|+.|+|++|++. .+|..+..+++|++|+|++|.++ .+|..+.. +++|++|+|++|.+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN-LSNLRVLDLSHNRL 282 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG-GTTCCEEECTTSCC
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC-CCCCCEEeCcCCcC
Confidence 44455555 56788899999999999999998 78888889999999999999999 89998875 99999999999999
Q ss_pred eeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCc
Q 045210 726 HGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANY 805 (873)
Q Consensus 726 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 805 (873)
+ .+|..+..+++|+.|+|++|.++ .+|..|+++++| +.|+|++|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L---------------------------------~~L~L~~N~ 327 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL---------------------------------QFLGVEGNP 327 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC---------------------------------CCEECTTSC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc---------------------------------cEEeCCCCc
Confidence 9 78999999999999999999997 889888877776 889999999
Q ss_pred ccccCChhhhcCCCC-CeeeCCCCcCcccCCccccCCCCCCeEeccCC
Q 045210 806 FSGEIPSQVTNLVGL-QTLKLSHNFFSGRIPVNMGAMKSVEALDFSSN 852 (873)
Q Consensus 806 l~~~ip~~l~~l~~L-~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 852 (873)
++|.+|..+..+... ..++|++|.++|.+|..+ +.|++++|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEeecc
Confidence 999999988765332 358899999999998764 55667777
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=3.7e-16 Score=152.52 Aligned_cols=162 Identities=19% Similarity=0.280 Sum_probs=96.9
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCC
Q 045210 667 QILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS 746 (873)
Q Consensus 667 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 746 (873)
+.+++++|.++ .+|..+.. ++++|++++|.+++..+...+..+++|++|++++|++++..|..+..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777774 55554433 6777777777776443332223367777777777777766666677777777777777
Q ss_pred CccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCC
Q 045210 747 NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLS 826 (873)
Q Consensus 747 N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls 826 (873)
|++++..|..++.+++| +.|++++|++++.+|..++.+++|++|+|+
T Consensus 88 N~l~~~~~~~~~~l~~L---------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQL---------------------------------KTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp CCCCEECSSSSTTCTTC---------------------------------CEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CcCCccCHHHhcCCCCC---------------------------------CEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 77776666555555444 667777777776666667777777777777
Q ss_pred CCcCcccCCccccCCCCCCeEeccCCccccccccccccC
Q 045210 827 HNFFSGRIPVNMGAMKSVEALDFSSNRLQGEIPKNMVNL 865 (873)
Q Consensus 827 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~l~~l 865 (873)
+|.+.+..+... -...++...+..+......|..+.+.
T Consensus 135 ~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~~l~~~ 172 (192)
T 1w8a_A 135 SNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKVRDV 172 (192)
T ss_dssp TCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTTTTS
T ss_pred CCCccCcCcchH-HHHHHHHcCCCCCCCCCCCChHHcCC
Confidence 777766554211 00112222344444455555555443
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=4e-16 Score=152.24 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=137.4
Q ss_pred cEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCc-ccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEcc
Q 045210 643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPV-SLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLR 721 (873)
Q Consensus 643 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~ 721 (873)
+.+++++|.++ .+|..+.. +|++|++++|++++..+. .+..+++|++|++++|++++..|..+.. +++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCEEECC
Confidence 78999999996 67876653 899999999999877665 4899999999999999999777877765 9999999999
Q ss_pred CCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEEC
Q 045210 722 ANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDL 801 (873)
Q Consensus 722 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 801 (873)
+|++++..|..+..+++|+.|+|++|++++.+|..+..+++| +.|++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------~~L~L 133 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL---------------------------------TSLNL 133 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC---------------------------------CEEEC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC---------------------------------CEEEe
Confidence 999999998889999999999999999999889888776665 89999
Q ss_pred CCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCcccc
Q 045210 802 SANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQG 856 (873)
Q Consensus 802 s~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 856 (873)
++|.+++..+-.. -...++...+..+......|..+. .....++..+.+..
T Consensus 134 ~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~~l~---~~~l~~l~~~~~~C 184 (192)
T 1w8a_A 134 ASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEFKC 184 (192)
T ss_dssp TTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTTT---TSBGGGSCTTTCCC
T ss_pred CCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCChHHc---CCChhhCcHhhcCc
Confidence 9999998765221 111233345556666666676654 44555677777653
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.5e-15 Score=143.34 Aligned_cols=137 Identities=22% Similarity=0.220 Sum_probs=101.2
Q ss_pred CCCcEEEccCCeec-ccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchh
Q 045210 688 TELRLFDISENEFV-GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKE 766 (873)
Q Consensus 688 ~~L~~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~ 766 (873)
++|++|++++|.++ +.+|..+.. +++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..++.+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--- 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL--- 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred ccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence 45666666666665 556665443 67777777777776654 567788888888888888887777777666665
Q ss_pred hcchhhhchhheeeecccceeccCCCCccceEEECCCCccccc-CChhhhcCCCCCeeeCCCCcCcccCC---ccccCCC
Q 045210 767 VLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE-IPSQVTNLVGLQTLKLSHNFFSGRIP---VNMGAMK 842 (873)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~ip---~~l~~l~ 842 (873)
+.|++++|++++. .+..++.+++|++|++++|.+++..+ ..+..++
T Consensus 98 ------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 147 (168)
T 2ell_A 98 ------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147 (168)
T ss_dssp ------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred ------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence 7888888888853 22678888889999999998886554 4778888
Q ss_pred CCCeEeccCCccccccccc
Q 045210 843 SVEALDFSSNRLQGEIPKN 861 (873)
Q Consensus 843 ~L~~L~ls~N~l~g~iP~~ 861 (873)
+|+.||+++|.+. ++|+.
T Consensus 148 ~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 148 QLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp SCCEETTEETTSC-BCCSS
T ss_pred cCcEecCCCCChh-hcccc
Confidence 8999999998877 45543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.4e-15 Score=140.30 Aligned_cols=126 Identities=21% Similarity=0.187 Sum_probs=71.8
Q ss_pred ccCcEEEccCCeee-eeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCC
Q 045210 713 SGIILLSLRANQFH-GFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIG 791 (873)
Q Consensus 713 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (873)
++++.|++++|.+. +.+|..+..+++|+.|++++|.+++. ..++.+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------- 65 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK----------------------------- 65 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT-----------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC-----------------------------
Confidence 45555555555555 45555555566666666666666533 23333332
Q ss_pred CCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCccc-CCccccCCCCCCeEeccCCccccccc---cccccCCC
Q 045210 792 YPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR-IPVNMGAMKSVEALDFSSNRLQGEIP---KNMVNLEF 867 (873)
Q Consensus 792 ~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~N~l~g~iP---~~l~~l~~ 867 (873)
|+.|++++|.+++.+|..++.+++|++|++++|.+++. .|..++.+++|+.|++++|++++..| ..+..++.
T Consensus 66 ----L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 66 ----LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp ----CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred ----CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 35666666666655566555666666666666666652 33556666666666666666665444 35566666
Q ss_pred CCcccC
Q 045210 868 LEIFNI 873 (873)
Q Consensus 868 L~~l~l 873 (873)
|++||+
T Consensus 142 L~~L~l 147 (149)
T 2je0_A 142 LTYLDG 147 (149)
T ss_dssp CCEETT
T ss_pred cccccC
Confidence 666553
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=4.6e-15 Score=141.51 Aligned_cols=136 Identities=21% Similarity=0.214 Sum_probs=105.7
Q ss_pred CCCCceEeccCCccc-CCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEE
Q 045210 615 SMRLQVLNLGNNTLS-GEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLF 693 (873)
Q Consensus 615 ~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 693 (873)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 466888888888887 67777778888888888888888755 667788888888888888887777777778888888
Q ss_pred EccCCeecccCC--hhHHhhcccCcEEEccCCeeeeeCC---cccCCCCCCCEEeCCCCccccccCh
Q 045210 694 DISENEFVGNIP--TWIGERLSGIILLSLRANQFHGFFP---PELCGLASLKILDLSSNNLTGVIPR 755 (873)
Q Consensus 694 ~Ls~n~l~~~ip--~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~ip~ 755 (873)
++++|.+++ +| ..+. .+++|+.|++++|++++..+ ..+..+++|+.|++++|.+. .+|.
T Consensus 101 ~Ls~N~l~~-~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKD-ISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCS-SGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccCc-chhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 888888874 44 4444 38888888888888886554 47788888999999888876 4554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=3.3e-15 Score=139.28 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=86.7
Q ss_pred CCCcEEEccCCeec-ccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchh
Q 045210 688 TELRLFDISENEFV-GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKE 766 (873)
Q Consensus 688 ~~L~~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~ 766 (873)
++|+.|++++|.++ +.+|..+.. +++|+.|++++|++++. ..+..+++|+.|++++|.+++.+|..++.+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--- 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL--- 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC---
T ss_pred ccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC---
Confidence 34455555555554 444443332 55555555555555544 456777888888888888887677766666655
Q ss_pred hcchhhhchhheeeecccceeccCCCCccceEEECCCCccccc-CChhhhcCCCCCeeeCCCCcCcccCC---ccccCCC
Q 045210 767 VLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGE-IPSQVTNLVGLQTLKLSHNFFSGRIP---VNMGAMK 842 (873)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~ip---~~l~~l~ 842 (873)
+.|++++|++++. .|..++.+++|++|++++|.+++..+ ..++.++
T Consensus 91 ------------------------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 140 (149)
T 2je0_A 91 ------------------------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140 (149)
T ss_dssp ------------------------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT
T ss_pred ------------------------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC
Confidence 7888888888763 44778888888888888888886655 4677888
Q ss_pred CCCeEeccC
Q 045210 843 SVEALDFSS 851 (873)
Q Consensus 843 ~L~~L~ls~ 851 (873)
+|+.||+++
T Consensus 141 ~L~~L~l~d 149 (149)
T 2je0_A 141 QLTYLDGYD 149 (149)
T ss_dssp TCCEETTBC
T ss_pred CcccccCCC
Confidence 888888763
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.6e-14 Score=138.95 Aligned_cols=133 Identities=19% Similarity=0.207 Sum_probs=95.9
Q ss_pred CcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcc
Q 045210 690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLE 769 (873)
Q Consensus 690 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~ 769 (873)
.+.+++++|+++ .+|..+ .++|+.|++++|++.+..+..+..+++|+.|++++|.+++..+..++.+++|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 78 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------ 78 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence 356677777766 566543 4577777777777776666667777888888888888875555555555544
Q ss_pred hhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEec
Q 045210 770 VDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDF 849 (873)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l 849 (873)
+.|++++|++++..+..++.+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 79 ---------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 79 ---------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp ---------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ---------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 77888888888666666778888888888888888655555677888888888
Q ss_pred cCCccccccc
Q 045210 850 SSNRLQGEIP 859 (873)
Q Consensus 850 s~N~l~g~iP 859 (873)
++|++.+..|
T Consensus 132 ~~N~~~~~~~ 141 (177)
T 2o6r_A 132 HTNPWDCSCP 141 (177)
T ss_dssp CSSCBCCCHH
T ss_pred cCCCeeccCc
Confidence 8888887665
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=140.89 Aligned_cols=127 Identities=19% Similarity=0.317 Sum_probs=69.3
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCC
Q 045210 667 QILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSS 746 (873)
Q Consensus 667 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 746 (873)
+.+++++|.++ .+|..+. ++|++|++++|.++ .+|..+.. +++|+.|++++|++++..+..+..+++|+.|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666655 4444332 45666666666665 55544443 55666666666666555555555555566666666
Q ss_pred CccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCC
Q 045210 747 NNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLS 826 (873)
Q Consensus 747 N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls 826 (873)
|.+++..|..|..+++| +.|+|++|++++..+..+..+++|+.|+++
T Consensus 88 N~l~~i~~~~f~~l~~L---------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSL---------------------------------RLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp SCCCBCCTTTTTTCTTC---------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CccCEeCHHHhCCCCCC---------------------------------CEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 55555444444444433 455555555554333345555555555555
Q ss_pred CCcCc
Q 045210 827 HNFFS 831 (873)
Q Consensus 827 ~N~l~ 831 (873)
+|++.
T Consensus 135 ~N~~~ 139 (193)
T 2wfh_A 135 ANPLY 139 (193)
T ss_dssp SSCEE
T ss_pred CCCee
Confidence 55554
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=6.7e-15 Score=157.23 Aligned_cols=238 Identities=13% Similarity=0.070 Sum_probs=123.2
Q ss_pred CCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccC--------CCCCcEEECCCCCCCCCccCccc
Q 045210 120 LKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGN--------LSNLQFLDLRPNYLGGLYVEDFG 191 (873)
Q Consensus 120 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~n~l~~l~~~~~~ 191 (873)
+++|++|||++|++.....+ -+.++.++.+.+..+. ..+..|.+ |++|+.+++.+ .++.++...
T Consensus 48 l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a-- 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA-- 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT--
T ss_pred hccCeEEecCcceeEEecCc--cccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHH--
Confidence 78899999999988721111 1112223444444442 12234555 77777777776 666666554
Q ss_pred cccCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCC----CCCCCCccccCCCCCcc-EEEcCCCCCCCCchhH
Q 045210 192 WVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGC----LLHHISPLSFANFSSLV-TLDISDNQFADSSIVN 266 (873)
Q Consensus 192 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~ 266 (873)
+.++++|+.+++++|.+..++.. .+..+.++..+..... ....+...+|.++..|+ .+.+... +.++.
T Consensus 120 -F~~~~~L~~l~l~~n~i~~i~~~--aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~----~~l~~ 192 (329)
T 3sb4_A 120 -FKGCDNLKICQIRKKTAPNLLPE--ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM----GKLED 192 (329)
T ss_dssp -TTTCTTCCEEEBCCSSCCEECTT--SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT----CCHHH
T ss_pred -hhcCcccceEEcCCCCccccchh--hhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC----CcHHH
Confidence 35566666666666666555432 3344555555544432 12333444555555555 3444322 11222
Q ss_pred hh----------------------------cCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhc
Q 045210 267 QV----------------------------LGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNK 318 (873)
Q Consensus 267 ~~----------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 318 (873)
.+ ..+++|+++++++|+++...+.+|.+|++|+++++.+| +....+.+|.+
T Consensus 193 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~ 271 (329)
T 3sb4_A 193 EIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN 271 (329)
T ss_dssp HHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred HHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhC
Confidence 11 12455555555555555444445555555555555554 44334445555
Q ss_pred CCCcC-EEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEE
Q 045210 319 FIDLE-YLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVN 374 (873)
Q Consensus 319 l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 374 (873)
+++|+ .+++.+ .++...+.+|.+|++|+.++++.|+++...+.+|.++++|+.++
T Consensus 272 ~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 272 CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 55555 555555 44434445555555555555555555544445555555555543
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=2.2e-14 Score=153.22 Aligned_cols=218 Identities=11% Similarity=0.022 Sum_probs=137.0
Q ss_pred CCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcc----cccCCcccccCCCC
Q 045210 615 SMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRF----SGKIPVSLQNCTEL 690 (873)
Q Consensus 615 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L 690 (873)
|++|+.+++.+ .++...+.+|.+|++|+.+++++|.+....+..|.++.++..+.+..+.. .......|.+|..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 88899999988 77767777899999999999999988877777888888888777766432 22334556677777
Q ss_pred c-EEEccCCeecccCChhHHhh---cccCcEEEccCCeeeeeCCccc-CCCCCCCEEeCCCCccccccChhhhhhhcCch
Q 045210 691 R-LFDISENEFVGNIPTWIGER---LSGIILLSLRANQFHGFFPPEL-CGLASLKILDLSSNNLTGVIPRCINNLAGMAK 765 (873)
Q Consensus 691 ~-~L~Ls~n~l~~~ip~~~~~~---l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 765 (873)
+ .+++.... .+|..++.. ..++..+.+.++-.... ...+ ..+++|+.+++++|.++..-+.+|.++.+|
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L-- 252 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNAD-FKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL-- 252 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHH-HHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC--
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHH-HHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC--
Confidence 7 55554432 334443321 34455555544321111 0111 125677777777777663333456655554
Q ss_pred hhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCC-eeeCCCCcCcccCCccccCCCCC
Q 045210 766 EVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQ-TLKLSHNFFSGRIPVNMGAMKSV 844 (873)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L 844 (873)
+.|++++| ++..-+..|.++++|+ .+++.+ .++..-+.+|.++++|
T Consensus 253 -------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 253 -------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp -------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred -------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 66777766 5544445567777777 777776 5554445667777777
Q ss_pred CeEeccCCccccccccccccCCCCCccc
Q 045210 845 EALDFSSNRLQGEIPKNMVNLEFLEIFN 872 (873)
Q Consensus 845 ~~L~ls~N~l~g~iP~~l~~l~~L~~l~ 872 (873)
+.+++++|.+...-+..+.++++|+.++
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7777777777754455667777776653
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=5.9e-16 Score=152.07 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=116.1
Q ss_pred ccCCCCccEEEccCCcccccCCc------ccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCccc
Q 045210 660 LGTLSSLQILHLRGNRFSGKIPV------SLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPEL 733 (873)
Q Consensus 660 l~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l 733 (873)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+.. +++|+.|++++|+++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-MENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-HTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-CCCCCEEECCCCCcc-cccchh
Confidence 44566777888888888877776 78888888888888888884 77 5554 888888888888887 566666
Q ss_pred CCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCC-h
Q 045210 734 CGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIP-S 812 (873)
Q Consensus 734 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip-~ 812 (873)
..+++|+.|++++|.+++ +| .++.+++| +.|++++|++++..+ .
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L---------------------------------~~L~l~~N~i~~~~~~~ 134 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNL---------------------------------RVLYMSNNKITNWGEID 134 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHS---------------------------------SEEEESEEECCCHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCC---------------------------------CEEECCCCcCCchhHHH
Confidence 667888888888888875 44 46655554 788888888874222 4
Q ss_pred hhhcCCCCCeeeCCCCcCcccCCcc----------ccCCCCCCeEeccCCccc
Q 045210 813 QVTNLVGLQTLKLSHNFFSGRIPVN----------MGAMKSVEALDFSSNRLQ 855 (873)
Q Consensus 813 ~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~ 855 (873)
.+..+++|++|++++|.+++.+|.. +..+++|+.|| +|+++
T Consensus 135 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6788888888888888888776653 67788888877 66655
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=1.4e-13 Score=132.34 Aligned_cols=133 Identities=20% Similarity=0.201 Sum_probs=102.7
Q ss_pred CceEeccCCcccCCCChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccC
Q 045210 618 LQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISE 697 (873)
Q Consensus 618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 697 (873)
.+.+++++++++ .+|..+ .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456777777776 344333 36788888888888866666678888888888888888876667778888888888888
Q ss_pred CeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccC
Q 045210 698 NEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP 754 (873)
Q Consensus 698 n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 754 (873)
|++++ +|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 86 N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88884 444433348889999999999886666667889999999999999998765
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=8.7e-16 Score=150.86 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=119.7
Q ss_pred hhccccCcEEEcCCCcCccCCcc------cccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHH
Q 045210 636 WMNWSFLFFLHLGENDFTGNLPT------SLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIG 709 (873)
Q Consensus 636 l~~l~~L~~L~l~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~ 709 (873)
+.....++.++++.+.+.+.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 55667788888888888877776 78888888999998888886 66 7888888999999988888 7887665
Q ss_pred hhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccC-hhhhhhhcCchhhcchhhhchhheeeecccceec
Q 045210 710 ERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIP-RCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKY 788 (873)
Q Consensus 710 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (873)
. +++|+.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++
T Consensus 91 ~-~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~-------------------------- 141 (198)
T 1ds9_A 91 V-ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK-------------------------- 141 (198)
T ss_dssp H-HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT--------------------------
T ss_pred c-CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCC--------------------------
Confidence 4 7888899999888886 34 57778888899998888874322 24444444
Q ss_pred cCCCCccceEEECCCCcccccCChh----------hhcCCCCCeeeCCCCcCcc
Q 045210 789 PIGYPYYLKVLDLSANYFSGEIPSQ----------VTNLVGLQTLKLSHNFFSG 832 (873)
Q Consensus 789 ~~~~~~~L~~L~ls~n~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~~ 832 (873)
|+.|++++|.+++.+|.. +..+++|+.|| +|.++.
T Consensus 142 -------L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 142 -------LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp -------CSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred -------CCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 478888888888776653 78888888887 666653
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=5.1e-13 Score=130.02 Aligned_cols=128 Identities=24% Similarity=0.286 Sum_probs=79.9
Q ss_pred CeEeCCCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCC
Q 045210 570 ETLDLSSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGE 649 (873)
Q Consensus 570 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 649 (873)
+.++++++.++......++++++|++++|.++ .+|.. +.++++|+.|++++|.+++..+..|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~----~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKE----LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGG----GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHH----hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45556666555433334556666666666665 33332 34466677777777777666666666677777777777
Q ss_pred CcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecc
Q 045210 650 NDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVG 702 (873)
Q Consensus 650 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 702 (873)
|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 77766666666666777777777777665555556666666666666666653
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.4e-13 Score=132.10 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=95.4
Q ss_pred cccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcC
Q 045210 684 LQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGM 763 (873)
Q Consensus 684 l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 763 (873)
+.++.+|++|++++|.++ .+|. +....++|+.|++++|++++. +.+..+++|+.|++++|.+++..|..++.+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445666666666666666 4543 333234777777777777765 567788888888888888885444444665554
Q ss_pred chhhcchhhhchhheeeecccceeccCCCCccceEEECCCCcccccCCh--hhhcCCCCCeeeCCCCcCcccCCcc----
Q 045210 764 AKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPS--QVTNLVGLQTLKLSHNFFSGRIPVN---- 837 (873)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~--~l~~l~~L~~L~Ls~N~l~~~ip~~---- 837 (873)
+.|++++|+++ .+|. .++.+++|++|++++|.++ .+|..
T Consensus 91 ---------------------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~ 135 (176)
T 1a9n_A 91 ---------------------------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYV 135 (176)
T ss_dssp ---------------------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHH
T ss_pred ---------------------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHH
Confidence 78888888885 5666 7888888888888888887 45664
Q ss_pred ccCCCCCCeEeccCCcccc
Q 045210 838 MGAMKSVEALDFSSNRLQG 856 (873)
Q Consensus 838 l~~l~~L~~L~ls~N~l~g 856 (873)
++.+++|+.||+++|....
T Consensus 136 ~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 136 IYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHCTTCSEETTEECCHHH
T ss_pred HHHCCccceeCCCcCCHHH
Confidence 7788888888888887653
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=5.1e-12 Score=137.59 Aligned_cols=240 Identities=16% Similarity=0.181 Sum_probs=121.3
Q ss_pred CCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCccccccCCCCCC
Q 045210 147 NLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLE 226 (873)
Q Consensus 147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~ 226 (873)
+|+.+.+..+ +...-..+|.++ +|+.+++.. .+..+.... +.++++|+.+++++|.++.++...+. +.+|+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a---F~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~ 206 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI---FYYCYNLKKADLSKTKITKLPASTFV---YAGIE 206 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSST---TTTCTTCCEEECTTSCCSEECTTTTT---TCCCS
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHH---hhCcccCCeeecCCCcceEechhhEe---ecccC
Confidence 4555555443 333333444443 455555553 344443332 34555555555555555555433222 35566
Q ss_pred EEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhH-hhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEECCC
Q 045210 227 TLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVN-QVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSR 305 (873)
Q Consensus 227 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 305 (873)
.+.+.. .+..+...+|.++++|+.+++..+ +. .+.. .+.+ .+|+.+.+. +.++..-..+|.+|++|+.+++.+
T Consensus 207 ~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~--~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 207 EVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS--TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC--EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred EEEeCC-chheehhhHhhCCCCCCEEecCCC-cc--Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 666653 255555566666666666666553 21 1221 2223 456666663 334434455566666666666655
Q ss_pred CCCC-----CCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 045210 306 NHFS-----SSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKL 380 (873)
Q Consensus 306 n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 380 (873)
+.+. ...+..|..+++|+.+.+.. .++..-..+|.+|++|+.+.+..+ ++.....+|.++ +|+.+++.+|..
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 5443 23344556666666666663 344444555666666666666433 444444556666 666666666655
Q ss_pred cchhhHHHHHhhhcccccccEEEccCcc
Q 045210 381 SQEISQVLDMFSACASNVLESLDLSNNT 408 (873)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 408 (873)
.......+.. ++ ..++.|.+..+.
T Consensus 358 ~~l~~~~F~~---~~-~~l~~l~vp~~~ 381 (401)
T 4fdw_A 358 PQVFEKVWYG---FP-DDITVIRVPAES 381 (401)
T ss_dssp CBCCCSSCCC---SC-TTCCEEEECGGG
T ss_pred cccccccccC---CC-CCccEEEeCHHH
Confidence 4433332221 11 125666665544
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=3.8e-13 Score=129.12 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=102.8
Q ss_pred cccCCCCceEeccCCcccCCCChhhhccc-cCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCC
Q 045210 612 MNNSMRLQVLNLGNNTLSGEIPDCWMNWS-FLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTEL 690 (873)
Q Consensus 612 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 690 (873)
+.++++|+.|++++|+++. +|. +..+. +|+.|++++|++++. ..+..+++|++|++++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3446778888888888874 454 44444 888999999888864 578888899999999998886655556888899
Q ss_pred cEEEccCCeecccCCh--hHHhhcccCcEEEccCCeeeeeCCcc----cCCCCCCCEEeCCCCccc
Q 045210 691 RLFDISENEFVGNIPT--WIGERLSGIILLSLRANQFHGFFPPE----LCGLASLKILDLSSNNLT 750 (873)
Q Consensus 691 ~~L~Ls~n~l~~~ip~--~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~ 750 (873)
++|++++|++. .+|. .+. .+++|+.|++++|++. .+|.. +..+++|+.||+++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999885 6776 555 3888999999999887 45553 788899999999988775
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.38 E-value=8e-12 Score=136.04 Aligned_cols=219 Identities=11% Similarity=0.158 Sum_probs=122.4
Q ss_pred CCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEEC
Q 045210 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLDL 303 (873)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 303 (873)
+|+.+.+.. .+..+...+|.+|++|+.+++..|.+. .++.....+.+|+.+.+..+ ++..-..+|.++++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~--~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT--KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS--EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce--EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 455555554 555556666777777777777766663 33443334567777777633 55445566777777777777
Q ss_pred CCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCC-----CcchhhhhcCCCCCEEEccCC
Q 045210 304 SRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLE-----SKIPRAFKRLRHLRSVNLSGN 378 (873)
Q Consensus 304 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n 378 (873)
..+ ++.....+|.+ .+|+.+.+. +.++.....+|.+|++|+.+.+.++.+. .....+|.++++|+.+.+.+
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 654 33333445555 667777773 3444455566777777777777666553 23345566666655555542
Q ss_pred cCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCC
Q 045210 379 KLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLN 458 (873)
Q Consensus 379 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 458 (873)
.++ .....+|.+|++|+.+.+..+ ++..-...|.++ +|+.+++.+|...
T Consensus 310 ~i~-----------------------------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 310 SIR-----------------------------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TCC-----------------------------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ceE-----------------------------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 122 222334555555666555433 333334455555 5666666555544
Q ss_pred cccChhhhhccc-ccceEEcCCCee
Q 045210 459 GTLSENHFANLT-KLVGFDASGNSL 482 (873)
Q Consensus 459 ~~~~~~~~~~l~-~L~~L~l~~n~~ 482 (873)
.++...|.+++ .++.+.+..+..
T Consensus 359 -~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 359 -QVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -ccccccccCCCCCccEEEeCHHHH
Confidence 33333455543 455555555443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=2.2e-12 Score=122.72 Aligned_cols=67 Identities=28% Similarity=0.294 Sum_probs=34.3
Q ss_pred CcEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhh
Q 045210 690 LRLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNL 760 (873)
Q Consensus 690 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 760 (873)
.+.+++++|.++ .+|..+ .++++.|++++|++++..|..+..+++|+.|+|++|++++..|..|..+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 77 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence 355666666665 455443 2455555555555555545555555555555555555553333333333
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.36 E-value=1.4e-11 Score=134.96 Aligned_cols=221 Identities=11% Similarity=0.087 Sum_probs=105.6
Q ss_pred cccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCCC
Q 045210 415 NQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTPP 494 (873)
Q Consensus 415 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 494 (873)
.+|..|++|+.+.+.++. .......|.++++|+.+.+..+ ++ .+....|.++..|+.+.+..+.... .....
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i---~~~~~-- 227 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYL---GDFAL-- 227 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEE---CTTTT--
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEe---ehhhc--
Confidence 356667777777776543 2233445667777777777655 22 5555667777777766665543221 11111
Q ss_pred ccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEeC
Q 045210 495 FQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLDL 574 (873)
Q Consensus 495 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 574 (873)
...+|+.+.+.... ..+....+..+..++.+.+..+...-....+..+..++.+..
T Consensus 228 ----------------------~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 228 ----------------------SKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp ----------------------TTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred ----------------------ccCCCceEEECCCc--eecccccccccccceeEEcCCCcceeeccccccccccceecc
Confidence 12233333333221 123333344445555555544432211113444444444433
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCccCcCcchhhhhhhcccCCCCceEeccCCcccCCCChhhhccccCcEEEcCCCcCcc
Q 045210 575 SSNSLSGPLPLIPSSLTTLDLSSNFLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGEIPDCWMNWSFLFFLHLGENDFTG 654 (873)
Q Consensus 575 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 654 (873)
....+... .+..+.+|+.+.+.++ +...-..+|.+|++|+.+++.++ ++.
T Consensus 284 ~~~~i~~~----------------------------~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~ 333 (394)
T 4fs7_A 284 GSVIVPEK----------------------------TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE 333 (394)
T ss_dssp CSSEECTT----------------------------TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred Cceeeccc----------------------------cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE
Confidence 33221111 1223445555555433 33233445555555555555433 332
Q ss_pred CCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCC
Q 045210 655 NLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISEN 698 (873)
Q Consensus 655 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 698 (873)
.-..+|.++.+|+.+++..+ ++.....+|.+|++|+.+++..+
T Consensus 334 I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 334 IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 33345555666666666544 44444555666666666665443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=6.2e-12 Score=119.94 Aligned_cols=104 Identities=24% Similarity=0.278 Sum_probs=56.9
Q ss_pred cEEEccCCeecccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcch
Q 045210 691 RLFDISENEFVGNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEV 770 (873)
Q Consensus 691 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~ 770 (873)
+.+++++|++. .+|..+ .++|+.|++++|++.+..|..+..+++|+.|+|++|++++..+..|..+++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L------- 83 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL------- 83 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh-------
Confidence 56667777665 566544 2556666666666665555555556666666666665554333333433333
Q ss_pred hhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCc
Q 045210 771 DKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFS 831 (873)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 831 (873)
+.|||++|++++..+..+..+++|++|+|++|++.
T Consensus 84 --------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 84 --------------------------TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp --------------------------CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred --------------------------hEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 45555555555433333555555555555555555
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=7.5e-12 Score=119.00 Aligned_cols=109 Identities=21% Similarity=0.268 Sum_probs=83.2
Q ss_pred CcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEcc
Q 045210 642 LFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLR 721 (873)
Q Consensus 642 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~ 721 (873)
.+.+++++|+++ .+|..+. ++|++|++++|++++..|..|..+++|++|++++|+++ .+|...+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence 456677777766 3565543 67788888888888777777888888888888888887 4555554458888888888
Q ss_pred CCeeeeeCCcccCCCCCCCEEeCCCCccccccC
Q 045210 722 ANQFHGFFPPELCGLASLKILDLSSNNLTGVIP 754 (873)
Q Consensus 722 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 754 (873)
+|++++..+..+..+++|+.|+|++|++++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 888887777778899999999999999986654
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.29 E-value=5.8e-11 Score=130.03 Aligned_cols=313 Identities=14% Similarity=0.160 Sum_probs=153.1
Q ss_pred ccCccCCCCCCeecCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccc
Q 045210 114 NPSLLGLKHLIHLDLSYNDFQGIQIPRFLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWV 193 (873)
Q Consensus 114 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l 193 (873)
..+|.++++|+.+.+..+ ++.+ -..+|.+|++|+.+++.++ +...-..+|.++++|+.+.+..+ +..+....|
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF--- 136 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF--- 136 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT---
T ss_pred HHHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee---
Confidence 456888888888888643 5443 2456778888888888754 44444556777888877766543 333333332
Q ss_pred cCCCCCcEEeCCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCC
Q 045210 194 SHLSLLKHLDLSGVDLSKTSDGPLITNSLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVN 273 (873)
Q Consensus 194 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 273 (873)
.++..++......... +. ...+..+++|+.+.+.++ +..+...+|.++.+|+.+++..+
T Consensus 137 ~~~~~~~~~~~~~~~~--i~--~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~---------------- 195 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTV--IG--DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN---------------- 195 (394)
T ss_dssp TTCCCSEEECCTTCCE--EC--TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT----------------
T ss_pred ecccccccccCccccc--cc--hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC----------------
Confidence 2222222221111110 00 112344444555544322 23333444444444444444433
Q ss_pred CcEEEccCCcCCCCChhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCC
Q 045210 274 LVFLDLSTNNFQGAVPDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSF 353 (873)
Q Consensus 274 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 353 (873)
++.....++.++..|+.+.+..+... +........+|+.+.+... ++......+..+..++.+.+..
T Consensus 196 ----------~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 196 ----------LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp ----------CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECC
T ss_pred ----------ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCC
Confidence 22122333444444444444333211 1122223344444444322 1112223344455555555544
Q ss_pred CcCCCcchhhhhcCCCCCEEEccCCcCcchhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCcc
Q 045210 354 NRLESKIPRAFKRLRHLRSVNLSGNKLSQEISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNI 433 (873)
Q Consensus 354 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 433 (873)
+.. ......+..+..++.+......+... . +..+ ..|+.+.+..+ +......+|.+|.+|+.+++..+ +
T Consensus 263 ~~~-~i~~~~F~~~~~l~~~~~~~~~i~~~---~---F~~~--~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v 331 (394)
T 4fs7_A 263 NKL-RIGGSLFYNCSGLKKVIYGSVIVPEK---T---FYGC--SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V 331 (394)
T ss_dssp TTC-EECSCTTTTCTTCCEEEECSSEECTT---T---TTTC--TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred Ccc-eeeccccccccccceeccCceeeccc---c---cccc--ccccccccccc-cceechhhhcCCCCCCEEEeCCc-c
Confidence 322 12233444445555544443322110 0 1111 12555555443 33333456677777777777643 4
Q ss_pred CccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCC
Q 045210 434 SGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGN 480 (873)
Q Consensus 434 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 480 (873)
+.....+|.+|++|+.+.+..+ ++ .++..+|.+|.+|+.+++..+
T Consensus 332 ~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 332 EEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred cEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 4334556777777777777665 43 566667777777777777654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=2.1e-13 Score=147.02 Aligned_cols=188 Identities=16% Similarity=0.076 Sum_probs=114.4
Q ss_pred cccCcEEEcCCCcCccCCccccc-----CCCCccEEEccCCcccccCCccc-ccCCCCcEEEccCCeecccCChhHHhh-
Q 045210 639 WSFLFFLHLGENDFTGNLPTSLG-----TLSSLQILHLRGNRFSGKIPVSL-QNCTELRLFDISENEFVGNIPTWIGER- 711 (873)
Q Consensus 639 l~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~ip~~~~~~- 711 (873)
++.|+.|++++|.++......+. ..++|+.|+|++|.++......+ ..+++|+.|+|++|.+++.....+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46788999999998754333332 23688899999988865433333 245678888888888875444444332
Q ss_pred ---cccCcEEEccCCeeee----eCCcccCCCCCCCEEeCCCCccccccChhhhh-hhcCchhhcchhhhchhheeeecc
Q 045210 712 ---LSGIILLSLRANQFHG----FFPPELCGLASLKILDLSSNNLTGVIPRCINN-LAGMAKEVLEVDKFFEDALIVYKK 783 (873)
Q Consensus 712 ---l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l~~L~~~~~~~~~~~~~~~~~~~~ 783 (873)
.++|+.|+|++|.++. .++..+...++|+.|||++|.+++.-...+.. +..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~--------------------- 209 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR--------------------- 209 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG---------------------
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc---------------------
Confidence 4678888888888764 23344466778888888888876432111111 011
Q ss_pred cceeccCCCCccceEEECCCCcccc----cCChhhhcCCCCCeeeCCCCcCcccCCccccCC---CC--CCeEe--ccCC
Q 045210 784 KVVKYPIGYPYYLKVLDLSANYFSG----EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAM---KS--VEALD--FSSN 852 (873)
Q Consensus 784 ~~~~~~~~~~~~L~~L~ls~n~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l---~~--L~~L~--ls~N 852 (873)
++.|+.|||++|.++. .++..+...++|++|+|++|.+++.-...+..+ .. |+.+. +..|
T Consensus 210 ---------~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~ 280 (372)
T 3un9_A 210 ---------NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT 280 (372)
T ss_dssp ---------CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC---
T ss_pred ---------CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCC
Confidence 2345788888888765 244455566788888888888875544433322 11 55555 5566
Q ss_pred cccc
Q 045210 853 RLQG 856 (873)
Q Consensus 853 ~l~g 856 (873)
.++.
T Consensus 281 ~~~~ 284 (372)
T 3un9_A 281 AVSE 284 (372)
T ss_dssp -CHH
T ss_pred ccCH
Confidence 5553
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=7.1e-13 Score=142.93 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=92.0
Q ss_pred CCCCEEEccCCCCCCCCccccC-----CCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhh-----
Q 045210 223 HSLETLRFSGCLLHHISPLSFA-----NFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAI----- 292 (873)
Q Consensus 223 ~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----- 292 (873)
+.|++|++++|.++......+. ..++|++|+|++|.+++.........+++|++|+|++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4555666666655543333322 225777777777777533333333345567777777777664333333
Q ss_pred cCCCCCCEEECCCCCCCCC----CchhhhcCCCcCEEEccCCcCCcc----CcccccCCCCCCEEeCCCCcCCCc----c
Q 045210 293 QNSTSLQHLDLSRNHFSSS----VPDWFNKFIDLEYLSLSYNELQGS----IPGSLGNLTSIKSLDLSFNRLESK----I 360 (873)
Q Consensus 293 ~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~ 360 (873)
...++|++|++++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|++|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2356677777777766532 333345566677777777766532 234455556666666666666542 2
Q ss_pred hhhhhcCCCCCEEEccCCcCcchhhHH
Q 045210 361 PRAFKRLRHLRSVNLSGNKLSQEISQV 387 (873)
Q Consensus 361 ~~~l~~l~~L~~L~L~~n~l~~~~~~~ 387 (873)
...+...++|++|++++|.++......
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 333445566666666666665544443
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=1.5e-11 Score=117.18 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=80.1
Q ss_pred cEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhcccCcEEEccC
Q 045210 643 FFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSGIILLSLRA 722 (873)
Q Consensus 643 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~ 722 (873)
+.+++++|++. .+|..+. ++|+.|++++|++++..|..|.++++|++|+|++|+++ .+|...+..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence 46666666665 5565553 67777788888777777777777888888888888877 46665544588888888888
Q ss_pred CeeeeeCCcccCCCCCCCEEeCCCCccccc
Q 045210 723 NQFHGFFPPELCGLASLKILDLSSNNLTGV 752 (873)
Q Consensus 723 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 752 (873)
|++++..+..+..+++|+.|+|++|++...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 888866666688899999999999999854
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=2.6e-10 Score=122.59 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=73.2
Q ss_pred EEEccCC-eecccCChhHHhhcccCcEEEccC-CeeeeeCCcccCCCCCCCEEeCCCCccccccChhhhhhhcCchhhcc
Q 045210 692 LFDISEN-EFVGNIPTWIGERLSGIILLSLRA-NQFHGFFPPELCGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLE 769 (873)
Q Consensus 692 ~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~ 769 (873)
.++++++ +++ .+|. +.. +++|+.|+|++ |++.+..|..|..+++|+.|+|++|.|++..|..|+++++|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L------ 82 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL------ 82 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC------
T ss_pred EEEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC------
Confidence 4577777 776 5777 553 77778888875 77777776777777777777777777777777666666655
Q ss_pred hhhhchhheeeecccceeccCCCCccceEEECCCCcccccCChhhhcCCCCCeeeCCCCcCccc
Q 045210 770 VDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFSGEIPSQVTNLVGLQTLKLSHNFFSGR 833 (873)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 833 (873)
+.|||++|+|++..|..+..++ |+.|+|++|.+...
T Consensus 83 ---------------------------~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 83 ---------------------------SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp ---------------------------CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred ---------------------------CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 6777777777754444444444 77777777777643
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=1.2e-08 Score=111.45 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=76.8
Q ss_pred ccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCCCeeeccccCCCCCC
Q 045210 414 TNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASGNSLVLKVVSPSWTP 493 (873)
Q Consensus 414 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 493 (873)
..+|..|..|+.+.+..+... .....|.+++.|+.+.+.. .++ .++...|.+|.+|+.+.+..+--
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~v~----------- 323 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEGIT----------- 323 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTTCC-----------
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCccc-----------
Confidence 345677778888877655432 3345677778888887753 333 56666777777777777765310
Q ss_pred CccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhcCCCCcEEeccCcccccccCCccccCCCCeEe
Q 045210 494 PFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKSLSQINYLNLSYNQIFGQIPDLNDAAQLETLD 573 (873)
Q Consensus 494 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 573 (873)
.....+|..|.+|+.+.+..+ + ..++...|..+++|+.+++.++.... ..+..+..|+.+.
T Consensus 324 ---------------~I~~~aF~~C~~L~~i~ip~s-v-~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 324 ---------------QILDDAFAGCEQLERIAIPSS-V-TKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLP 384 (394)
T ss_dssp ---------------EECTTTTTTCTTCCEEEECTT-C-CBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----
T ss_pred ---------------EehHhHhhCCCCCCEEEECcc-c-CEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEE
Confidence 112345666777777777544 3 25677777777888888877765431 2444555566555
Q ss_pred CCCC
Q 045210 574 LSSN 577 (873)
Q Consensus 574 l~~n 577 (873)
+..+
T Consensus 385 i~~~ 388 (394)
T 4gt6_A 385 VAPG 388 (394)
T ss_dssp ----
T ss_pred eCCC
Confidence 5443
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.99 E-value=1.4e-08 Score=111.02 Aligned_cols=299 Identities=11% Similarity=0.133 Sum_probs=143.3
Q ss_pred CCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCC-Cch-hHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCEEE
Q 045210 225 LETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFAD-SSI-VNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQHLD 302 (873)
Q Consensus 225 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 302 (873)
|+.+.+.. .++.+...+|.+|++|+.+.+..+.-.. ..+ ...+.++.+|+.+.+..+ ++..-..++..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 44444432 2444445555555555555554432100 111 123444555555444332 2223334455666666666
Q ss_pred CCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 045210 303 LSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLSGNKLSQ 382 (873)
Q Consensus 303 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 382 (873)
+..+ +.......+..+..|+.+.+..+ ++..-..+|. ...|+.+.+..+-. .....++..+..++...........
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceeccccccccc
Confidence 6432 22223344555666666666543 2222223333 24566666544321 1223455555666555554433221
Q ss_pred hhhHHHHHhhhcccccccEEEccCcccCCccccccCCCCCCCEEeCCCCccCccccccccCCCCCCEEEccCccCCcccC
Q 045210 383 EISQVLDMFSACASNVLESLDLSNNTLFGLLTNQIGNFKNLDSLDLSFNNISGHIPLSLGQLSSLRYLDVSTNNLNGTLS 462 (873)
Q Consensus 383 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 462 (873)
. .......+.........+.....+..+.+... ++......|..+..|+.+.+.++.. .+.
T Consensus 220 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~--~I~ 280 (394)
T 4gt6_A 220 I----------------DNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV--SIG 280 (394)
T ss_dssp S----------------SSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC--EEC
T ss_pred c----------------cceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc--eec
Confidence 0 00000011111100111222334444444322 2223345677777888887765543 456
Q ss_pred hhhhhcccccceEEcCCCeeeccccCCCCCCCccccEEeccccccCCCcchhhhcCCcccEEEccCCCCCcccChhHHhc
Q 045210 463 ENHFANLTKLVGFDASGNSLVLKVVSPSWTPPFQLQAIGLSSCFIGPQFPQWLLSQNHLIYLDLSNSSISDTIPDRLVKS 542 (873)
Q Consensus 463 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~ 542 (873)
...|.+++.|+.+.+...- .......|..|.+|+.+++..+ + ..+....|..
T Consensus 281 ~~aF~~c~~L~~i~l~~~i--------------------------~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~ 332 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFSSRI--------------------------TELPESVFAGCISLKSIDIPEG-I-TQILDDAFAG 332 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC--------------------------CEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTT
T ss_pred CcccccccccccccCCCcc--------------------------cccCceeecCCCCcCEEEeCCc-c-cEehHhHhhC
Confidence 6667777777777665321 1112345667777888877654 2 3566677777
Q ss_pred CCCCcEEeccCcccccccC-CccccCCCCeEeCCCC
Q 045210 543 LSQINYLNLSYNQIFGQIP-DLNDAAQLETLDLSSN 577 (873)
Q Consensus 543 l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n 577 (873)
+.+|+.+.+..+ ++..-. +|..+.+|+.+++.++
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 778888877644 332222 5666666666665554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=1.8e-09 Score=116.03 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=79.9
Q ss_pred ceEeccCC-cccCCCChhhhccccCcEEEcCC-CcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEcc
Q 045210 619 QVLNLGNN-TLSGEIPDCWMNWSFLFFLHLGE-NDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDIS 696 (873)
Q Consensus 619 ~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 696 (873)
..++.+++ +++ .+|. +..+++|+.|+|++ |++.+..|..|.++++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677777 776 4677 88888888888885 88887777778888888888888888888888888888888888888
Q ss_pred CCeecccCChhHHhhcccCcEEEccCCeee
Q 045210 697 ENEFVGNIPTWIGERLSGIILLSLRANQFH 726 (873)
Q Consensus 697 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~ 726 (873)
+|+++ .+|...+..++ |+.|++.+|++.
T Consensus 89 ~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 88887 56655554333 777777777765
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=1.9e-09 Score=115.01 Aligned_cols=161 Identities=17% Similarity=0.221 Sum_probs=94.1
Q ss_pred ccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHh-hcccCcEEEccC--Ceeeee-----C
Q 045210 658 TSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGE-RLSGIILLSLRA--NQFHGF-----F 729 (873)
Q Consensus 658 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~l~~L~~L~L~~--n~l~~~-----~ 729 (873)
..+..+++|+.|+|++|.-. .++. +. +++|+.|++..|.+.......+.. .+++|+.|+|+. |...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 33445566666666665211 1222 22 566777777666654333233321 366777776642 111111 1
Q ss_pred Cccc--CCCCCCCEEeCCCCccccccChhhhhhhcCchhhcchhhhchhheeeecccceeccCCCCccceEEECCCCccc
Q 045210 730 PPEL--CGLASLKILDLSSNNLTGVIPRCINNLAGMAKEVLEVDKFFEDALIVYKKKVVKYPIGYPYYLKVLDLSANYFS 807 (873)
Q Consensus 730 p~~l--~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 807 (873)
...+ ..+++|+.|+|++|.+++..+..+..... .+.|+.||||.|.++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~------------------------------~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI------------------------------LPQLETMDISAGVLT 292 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS------------------------------GGGCSEEECCSSCCB
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc------------------------------CCCCCEEECCCCCCC
Confidence 1112 34789999999998887554443332111 345689999999988
Q ss_pred cc----CChhhhcCCCCCeeeCCCCcCcccCCccccC-CCCCCeEeccCCc
Q 045210 808 GE----IPSQVTNLVGLQTLKLSHNFFSGRIPVNMGA-MKSVEALDFSSNR 853 (873)
Q Consensus 808 ~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l~~L~~L~ls~N~ 853 (873)
+. ++..+.++++|+.|+|++|.++...-..+.. + ...+|+++++
T Consensus 293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 63 4555567899999999999888654333332 2 3568888887
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=1.6e-08 Score=107.83 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=26.8
Q ss_pred hhhhcCCCCCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCccccc--CCCCCCEEeCC
Q 045210 289 PDAIQNSTSLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLG--NLTSIKSLDLS 352 (873)
Q Consensus 289 ~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~ 352 (873)
...+..+++|+.|++++|.-. .++. + .+++|++|++..+.+.......+. .+++|++|+|+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 334444555555555444211 1121 2 245555555555554432222232 45555555553
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.58 E-value=2.8e-06 Score=92.16 Aligned_cols=208 Identities=11% Similarity=0.081 Sum_probs=89.1
Q ss_pred cccCCCCCCEEeccCCcCCCCCcccccCCCCCcEEECCCCCCCCCccCccccccCCCCCcEEeCCCCCCCCCCCcccccc
Q 045210 141 FLGSLENLMYLNISRAGFVGIIPHQIGNLSNLQFLDLRPNYLGGLYVEDFGWVSHLSLLKHLDLSGVDLSKTSDGPLITN 220 (873)
Q Consensus 141 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 220 (873)
+|.+|.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ +..+....| .. .+|+.+.+..+ +..+... .+.
T Consensus 64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF---~~-~~L~~i~lp~~-~~~i~~~--~F~ 133 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVF---QG-TDLDDFEFPGA-TTEIGNY--IFY 133 (379)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTT---TT-CCCSEEECCTT-CCEECTT--TTT
T ss_pred HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEecccee---cc-CCcccccCCCc-ccccccc--ccc
Confidence 4555666666666433 333333455554 4555555432 444444333 12 24556655443 1111111 112
Q ss_pred CCCCCCEEEccCCCCCCCCccccCCCCCccEEEcCCCCCCCCchhHhhcCCCCCcEEEccCCcCCCCChhhhcCCCCCCE
Q 045210 221 SLHSLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQFADSSIVNQVLGLVNLVFLDLSTNNFQGAVPDAIQNSTSLQH 300 (873)
Q Consensus 221 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 300 (873)
. .+++.+.+.. .++.+...+|.++..++.+.+..+..... ...... .+ ........+..+..+..
T Consensus 134 ~-~~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~--~~~~~~----------~~-~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 134 N-SSVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYV--AENYVL----------YN-KNKTILESYPAAKTGTE 198 (379)
T ss_dssp T-CCCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEE--EETTEE----------EE-TTSSEEEECCTTCCCSE
T ss_pred c-ceeeeeeccc-eeeccccchhcccccccccccccccceee--ccccee----------cc-cccceeccccccccccc
Confidence 2 2444444432 24444556667777777776665432200 000000 00 00011222333344444
Q ss_pred EECCCCCCCCCCchhhhcCCCcCEEEccCCcCCccCcccccCCCCCCEEeCCCCcCCCcchhhhhcCCCCCEEEcc
Q 045210 301 LDLSRNHFSSSVPDWFNKFIDLEYLSLSYNELQGSIPGSLGNLTSIKSLDLSFNRLESKIPRAFKRLRHLRSVNLS 376 (873)
Q Consensus 301 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 376 (873)
+.+...... .....+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....++.++.+|+.+.+.
T Consensus 199 ~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 199 FTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp EECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence 444332211 22333445555665555433 22233344555666666666543 333333455555555555543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.56 E-value=3.1e-06 Score=91.78 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=50.7
Q ss_pred hhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccCCcccccCCcccccCCCCcEEEccCCeecccCChhHHhhccc
Q 045210 635 CWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCTELRLFDISENEFVGNIPTWIGERLSG 714 (873)
Q Consensus 635 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~ 714 (873)
.+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +. .++...+.++++
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccc
Confidence 4444455555555433 22122334445555555555443 33344445555555555555432 22 344444444555
Q ss_pred CcEEEccCCeeeeeCCcccCCCCCCCEEeCCC
Q 045210 715 IILLSLRANQFHGFFPPELCGLASLKILDLSS 746 (873)
Q Consensus 715 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 746 (873)
|+.+.+.++.++..-...|.++++|+.++|..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 55555555444434344455555555555543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=9.9e-08 Score=91.60 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=53.4
Q ss_pred CCcEEEccCc-cCcCcchhhhhhhcccCCCCceEeccCCcccCC----CChhhhccccCcEEEcCCCcCccC----Cccc
Q 045210 589 SLTTLDLSSN-FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE----IPDCWMNWSFLFFLHLGENDFTGN----LPTS 659 (873)
Q Consensus 589 ~L~~L~l~~n-~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~p~~ 659 (873)
+|++|++++| .+.......++..+...++|++|+|++|.+... +...+...++|++|+|++|.+... +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 3444444444 444433344444455555566666666655431 222333445555555555555432 2333
Q ss_pred ccCCCCccEEEc--cCCccccc----CCcccccCCCCcEEEccCCeec
Q 045210 660 LGTLSSLQILHL--RGNRFSGK----IPVSLQNCTELRLFDISENEFV 701 (873)
Q Consensus 660 l~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~ 701 (873)
+...++|++|+| ++|.+... +...+...+.|++|++++|.+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 444455555555 45555432 1223333455555555555543
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=1.6e-07 Score=94.55 Aligned_cols=78 Identities=23% Similarity=0.197 Sum_probs=66.2
Q ss_pred CccceEEECCCCcccc--cCChhhhcCCCCCeeeCCCCcCcccCCccccCCC--CCCeEeccCCcccccccc-------c
Q 045210 793 PYYLKVLDLSANYFSG--EIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMK--SVEALDFSSNRLQGEIPK-------N 861 (873)
Q Consensus 793 ~~~L~~L~ls~n~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~g~iP~-------~ 861 (873)
++.|+.|+||+|++++ .+|..+..+++|+.|+|++|.+++. ..+..++ +|++|++++|++.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3456999999999998 6778889999999999999999975 4455555 999999999999998873 3
Q ss_pred cccCCCCCccc
Q 045210 862 MVNLEFLEIFN 872 (873)
Q Consensus 862 l~~l~~L~~l~ 872 (873)
+..++.|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 67888888886
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=4.5e-07 Score=86.96 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=63.8
Q ss_pred hhcCCCCCcEEEccCC-cCCC----CChhhhcCCCCCCEEECCCCCCCCC----CchhhhcCCCcCEEEccCCcCCcc--
Q 045210 267 QVLGLVNLVFLDLSTN-NFQG----AVPDAIQNSTSLQHLDLSRNHFSSS----VPDWFNKFIDLEYLSLSYNELQGS-- 335 (873)
Q Consensus 267 ~~~~l~~L~~L~L~~n-~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~-- 335 (873)
.+...++|++|+|++| .+.. .+...+...++|++|++++|.+... +...+...++|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3344445555555554 4432 1233444555666666666655432 223344456666666666666532
Q ss_pred --CcccccCCCCCCEEeC--CCCcCCCc----chhhhhcCCCCCEEEccCCcCcc
Q 045210 336 --IPGSLGNLTSIKSLDL--SFNRLESK----IPRAFKRLRHLRSVNLSGNKLSQ 382 (873)
Q Consensus 336 --~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~ 382 (873)
+...+...++|++|++ ++|.+... +...+...++|++|++++|.+..
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3444556667777777 66766543 33445556777777777776643
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=4.2e-07 Score=91.52 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=40.7
Q ss_pred hccccCcEEEcCCCcCcc--CCcccccCCCCccEEEccCCcccccCCcccccCC--CCcEEEccCCeecccCC
Q 045210 637 MNWSFLFFLHLGENDFTG--NLPTSLGTLSSLQILHLRGNRFSGKIPVSLQNCT--ELRLFDISENEFVGNIP 705 (873)
Q Consensus 637 ~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~ip 705 (873)
.++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 445666666666666665 3344555666777777777766643 2233333 67777777777766665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=2.4e-05 Score=72.66 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=39.5
Q ss_pred CCCEEECCCCCCCCCCchhhhcCCCcCEEEccCCc-CCccCcccccCC----CCCCEEeCCCCc-CCCcchhhhhcCCCC
Q 045210 297 SLQHLDLSRNHFSSSVPDWFNKFIDLEYLSLSYNE-LQGSIPGSLGNL----TSIKSLDLSFNR-LESKIPRAFKRLRHL 370 (873)
Q Consensus 297 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~L 370 (873)
+|++||+++|.++...-..+..+++|++|+|++|. +++..-..++.+ ++|++|++++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443333334445555555555553 433322333332 245566665553 544434445556666
Q ss_pred CEEEccCCc
Q 045210 371 RSVNLSGNK 379 (873)
Q Consensus 371 ~~L~L~~n~ 379 (873)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=1.9e-05 Score=73.43 Aligned_cols=82 Identities=9% Similarity=0.109 Sum_probs=38.4
Q ss_pred CCCEEEccCCCCCCCCccccCCCCCccEEEcCCCC-CCCCchhHhhcCC----CCCcEEEccCCc-CCCCChhhhcCCCC
Q 045210 224 SLETLRFSGCLLHHISPLSFANFSSLVTLDISDNQ-FADSSIVNQVLGL----VNLVFLDLSTNN-FQGAVPDAIQNSTS 297 (873)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 297 (873)
+|++|++++|.++...-..+.++++|++|+|++|. ++ ..-...+..+ ++|++|++++|. +++.--..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 34555555555444444445555555555555553 43 2222333332 245555555543 44333333444555
Q ss_pred CCEEECCCC
Q 045210 298 LQHLDLSRN 306 (873)
Q Consensus 298 L~~L~l~~n 306 (873)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555544
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.27 E-value=0.00015 Score=68.81 Aligned_cols=112 Identities=18% Similarity=0.169 Sum_probs=58.4
Q ss_pred CCcEEEccCc-cCcCcchhhhhhhcccCCCCceEeccCCcccCC----CChhhhccccCcEEEcCCCcCccC----Cccc
Q 045210 589 SLTTLDLSSN-FLSGTLSRFLCNEMNNSMRLQVLNLGNNTLSGE----IPDCWMNWSFLFFLHLGENDFTGN----LPTS 659 (873)
Q Consensus 589 ~L~~L~l~~n-~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~p~~ 659 (873)
.|+.|++++| .+.......++..+...+.|+.|+|++|++... +-+.+..-+.|++|+|++|.+... +-+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4555555553 554444455566666666677777777766532 223344456666666666666532 2233
Q ss_pred ccCCCCccEEEccCCc---ccc----cCCcccccCCCCcEEEccCCee
Q 045210 660 LGTLSSLQILHLRGNR---FSG----KIPVSLQNCTELRLFDISENEF 700 (873)
Q Consensus 660 l~~l~~L~~L~L~~n~---l~~----~~p~~l~~l~~L~~L~Ls~n~l 700 (873)
+..-+.|++|+|++|. +.. .+...+..-+.|+.|+++.|..
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 4444556666665442 221 1223334445555666555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.04 E-value=0.0012 Score=62.41 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=58.5
Q ss_pred CCCCCcEEEccCC-cCCC----CChhhhcCCCCCCEEECCCCCCCC----CCchhhhcCCCcCEEEccCCcCCcc----C
Q 045210 270 GLVNLVFLDLSTN-NFQG----AVPDAIQNSTSLQHLDLSRNHFSS----SVPDWFNKFIDLEYLSLSYNELQGS----I 336 (873)
Q Consensus 270 ~l~~L~~L~L~~n-~l~~----~~~~~l~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~ 336 (873)
.-+.|++|+|++| .+.. .+.+++..-+.|++|+|++|.+.. .+.+.+..-+.|++|+|++|.+... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445555555543 4432 234445555566666666666542 2233344556666666666666532 2
Q ss_pred cccccCCCCCCEEeCCCC---cCCC----cchhhhhcCCCCCEEEccCCcC
Q 045210 337 PGSLGNLTSIKSLDLSFN---RLES----KIPRAFKRLRHLRSVNLSGNKL 380 (873)
Q Consensus 337 ~~~l~~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~L~~n~l 380 (873)
.+.+..-+.|++|+|+++ .+.. .+...+..-+.|+.|+++.+.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 233444556777777654 2222 1334555666777777766543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.24 E-value=0.0052 Score=54.25 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=30.0
Q ss_pred EEECCCCccc-ccCChhhhcCCCCCeeeCCCCcCcccCCccccCCCCCCeEeccCCccc
Q 045210 798 VLDLSANYFS-GEIPSQVTNLVGLQTLKLSHNFFSGRIPVNMGAMKSVEALDFSSNRLQ 855 (873)
Q Consensus 798 ~L~ls~n~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 855 (873)
.+|-+++.++ ..+|..+. ++|++|+|++|+|+..-+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 24554322 24556666666666444444555666666666666553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.76 E-value=0.0086 Score=52.83 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=39.8
Q ss_pred EEEccCCeec-ccCChhHHhhcccCcEEEccCCeeeeeCCcccCCCCCCCEEeCCCCcccc
Q 045210 692 LFDISENEFV-GNIPTWIGERLSGIILLSLRANQFHGFFPPELCGLASLKILDLSSNNLTG 751 (873)
Q Consensus 692 ~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 751 (873)
.++.+++.++ ..+|..+ .++++.|+|++|+++...+..|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5666777664 3566543 3467777777777776666667778888888888888763
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.07 E-value=1.1e+02 Score=24.77 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=19.9
Q ss_pred ChhhhccccCcEEEcCCCcCccCCcccccCCCCccEEEccC
Q 045210 633 PDCWMNWSFLFFLHLGENDFTGNLPTSLGTLSSLQILHLRG 673 (873)
Q Consensus 633 p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 673 (873)
..+|.+|++|+.+.+-.+ ++..-...|.++.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345555555555555443 2222234455555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.78 E-value=64 Score=26.12 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=19.3
Q ss_pred ccccCCCCCCEEEccCccCCcccChhhhhcccccceEEcCC
Q 045210 439 LSLGQLSSLRYLDVSTNNLNGTLSENHFANLTKLVGFDASG 479 (873)
Q Consensus 439 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 479 (873)
..|.+|++|+.+.+..+ ++ .|....|.+|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 34555555555555443 11 34444555555555555544
Done!