BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045212
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 89 PVWVANRNTPIADKSGSLTIDSRDGNLKILRKGGNSIVVS-SVQAMGNTSAALYETGNFV 147
VW +N T I K G + DGN + G S+ S SV+ GN L E GN V
Sbjct: 39 SVWASN--TGILGKKGCRAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVV 96
Query: 148 LYETN 152
+Y ++
Sbjct: 97 IYRSD 101
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 90 VWVANRNTPIADKSGSLTIDSRDGNLKILRKGGNSIVVS-SVQAMGNTSAALYETGNFVL 148
VW N + P K G + DGN + G S+ S SV+ GN L E GN V+
Sbjct: 40 VWTTNTDIP--GKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVI 97
Query: 149 YETN 152
Y ++
Sbjct: 98 YGSD 101
>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 90 VWVANRNTPIADKSGSLTIDSRDGNLKILRKGGNSIVVS-SVQAMGNTSAALYETGNFVL 148
VW +N T I K G + DGN + G S+ S SV+ GN L E GN V+
Sbjct: 40 VWASN--TGILGKKGCKAVLQADGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVI 97
Query: 149 YETN 152
Y ++
Sbjct: 98 YGSD 101
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 89 PVWVANRNTPIADKSGSLTIDSRDGNLKILRKGGNSIVVS-SVQAMGNTSAALYETGNFV 147
VW +N T I K G + DGN + G S+ S SV+ GN L E GN V
Sbjct: 39 SVWASN--TGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVV 96
Query: 148 LY 149
+Y
Sbjct: 97 IY 98
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 90 VWVANRNTPIADKSGSLTIDSRDGNLKILRKGGNSIVVS-SVQAMGNTSAALYETGNFVL 148
VW +N + P K G + DGN + G S+ S SV+ GN L E GN V+
Sbjct: 40 VWSSNTDIP--GKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVVI 97
Query: 149 YETN 152
Y ++
Sbjct: 98 YGSD 101
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 89 PVWVANRNTPIADKSGSLTIDSRDGNLKILRKGGNSIVVS-SVQAMGNTSAALYETGNFV 147
VW + NT I K G + DGN + G S+ S SV+ GN L E GN V
Sbjct: 39 AVW--SSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVV 96
Query: 148 LYETN 152
+Y ++
Sbjct: 97 IYRSD 101
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 96 NTPIADKSGSLTIDSRDGNLKILRKGGNSIVVS-SVQAMGNTSAALYETGNFVLY 149
NT I KSG + DGN + G S+ S S + GN L + GN ++Y
Sbjct: 44 NTEIGGKSGCSAVLQSDGNFVVYDSSGRSLWASHSTRGSGNYILILQDDGNVIIY 98
>pdb|3I76|A Chain A, The Crystal Structure Of The Orthorhombic Form Of The
Putative Had- Hydrolase Yfnb From Bacillus Subtilis
Bound To Magnesium Reveals Interdomain Movement
pdb|3I76|B Chain B, The Crystal Structure Of The Orthorhombic Form Of The
Putative Had- Hydrolase Yfnb From Bacillus Subtilis
Bound To Magnesium Reveals Interdomain Movement
pdb|3I76|C Chain C, The Crystal Structure Of The Orthorhombic Form Of The
Putative Had- Hydrolase Yfnb From Bacillus Subtilis
Bound To Magnesium Reveals Interdomain Movement
Length = 244
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 67/177 (37%), Gaps = 24/177 (13%)
Query: 133 MGNTSAALYETGNFVLYETNPSGSMERE---------LWQSFDYPTDILLPGMKLGLNLQ 183
+ N A Y+T N L+ G M R+ L + + Y D L K L+
Sbjct: 39 LTNDMKAQYKTINQGLWRAFEEGKMTRDEVVNTRFSALLKEYGYEADGALLEQKYRRFLE 98
Query: 184 TGHGWFLRSWTSEDSPAEGEFTLNIDPNVSNQLIIQRRGEVLWTSGLFPHWRALDLDSDF 243
GH + S + +F L I N + +R L SGLFP ++ + + D
Sbjct: 99 EGH-QLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKR----LRDSGLFPFFKDIFVSEDT 153
Query: 244 HFSYTLNEKERYFNYSLNGNFTSFPTLQIDSRGSLTVTGALPISCPGSEGCVRLSSC 300
F + E YFNY F P Q + +L + +L G + L +C
Sbjct: 154 GFQKPMKE---YFNYV----FERIP--QFSAEHTLIIGDSLTADIKGGQ-LAGLDTC 200
>pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 56 YMSSEDRY------LGIWYHRPTDP--------SDSHWSYGSPKINQ 88
Y+ SE +Y +G WY R D S S W YGSP++ +
Sbjct: 772 YVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLER 818
>pdb|2HQC|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 56 YMSSEDRY------LGIWYHRPTDP--------SDSHWSYGSPKINQ 88
Y+ SE +Y +G WY R D S S W YGSP++ +
Sbjct: 772 YVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLER 818
>pdb|2HQF|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 56 YMSSEDRY------LGIWYHRPTDP--------SDSHWSYGSPKINQ 88
Y+ SE +Y +G WY R D S S W YGSP++ +
Sbjct: 772 YVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLER 818
>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
Transporter Acrb
pdb|2DHH|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|3AOA|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
Length = 1053
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 56 YMSSEDRY------LGIWYHRPTDP--------SDSHWSYGSPKINQ 88
Y+ SE +Y +G WY R D S S W YGSP++ +
Sbjct: 772 YVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLER 818
>pdb|2HQG|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 56 YMSSEDRY------LGIWYHRPTDP--------SDSHWSYGSPKINQ 88
Y+ SE +Y +G WY R D S S W YGSP++ +
Sbjct: 772 YVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLER 818
>pdb|3V38|A Chain A, Carboxypeptidase T Mutant L254n
Length = 326
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 1 MGIKQRIDLLISFSFFVLLTGPCYSQTDTLLPGQLLKDGDELVSAFGN--FRMGFFSYMS 58
+G KQ+I LI+F + L Y T T +P + +D + N + ++
Sbjct: 191 VGGKQQIKTLITFHTYSELILYPYGYTYTDVPSDMTQDDFNVFKTMANTMAQTNGYTPQQ 250
Query: 59 SEDRYLGIWYHRPTDPSDSHWSYGSPKI 86
+ D Y+ TD + W+YG KI
Sbjct: 251 ASDNYI-------TDGDMTDWAYGQHKI 271
>pdb|2J8S|A Chain A, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|B Chain B, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|C Chain C, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
Length = 1055
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 56 YMSSEDRY------LGIWYHRPTDP--------SDSHWSYGSPKINQ 88
Y+ SE +Y +G WY R D S S W YGSP++ +
Sbjct: 772 YVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLER 818
>pdb|2GIF|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|D Chain D, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|E Chain E, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|F Chain F, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|4DX5|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 56 YMSSEDRY------LGIWYHRPTDP--------SDSHWSYGSPKINQ 88
Y+ SE +Y +G WY R D S S W YGSP++ +
Sbjct: 772 YVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLER 818
>pdb|4DX6|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 56 YMSSEDRY------LGIWYHRPTDP--------SDSHWSYGSPKINQ 88
Y+ SE +Y +G WY R D S S W YGSP++ +
Sbjct: 772 YVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLER 818
>pdb|1T9T|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9U|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9V|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9W|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9X|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9Y|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
Length = 1049
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 56 YMSSEDRY------LGIWYHRPTDP--------SDSHWSYGSPKINQ 88
Y+ SE +Y +G WY R D S S W YGSP++ +
Sbjct: 772 YVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLER 818
>pdb|1OY6|A Chain A, Structural Basis Of The Multiple Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY8|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY9|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OYD|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|1OYE|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|2I6W|A Chain A, Crystal Structure Of The Multidrug Efflux Transporter Acrb
pdb|2RDD|A Chain A, X-Ray Crystal Structure Of Acrb In Complex With A Novel
Transmembrane Helix.
pdb|3D9B|A Chain A, Symmetric Structure Of E. Coli Acrb
pdb|2W1B|A Chain A, The Structure Of The Efflux Pump Acrb In Complex With Bile
Acid
Length = 1049
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 56 YMSSEDRY------LGIWYHRPTDP--------SDSHWSYGSPKINQ 88
Y+ SE +Y +G WY R D S S W YGSP++ +
Sbjct: 772 YVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLER 818
>pdb|3NOC|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 1049
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 56 YMSSEDRY------LGIWYHRPTDP--------SDSHWSYGSPKINQ 88
Y+ SE +Y +G WY R D S S W YGSP++ +
Sbjct: 772 YVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLER 818
>pdb|3QNV|A Chain A, Carboxypeptidase T
pdb|4DJL|A Chain A, Carboxypeptidase T With N-sulfamoyl-l-phenylalanine
Length = 323
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 1 MGIKQRIDLLISFSFFVLLTGPCYSQTDTLLPGQLLKDGDELVSAFGNFRMGFFSYMSSE 60
+G KQ+I LI+F + L Y T T +P + +D + N Y +
Sbjct: 191 VGGKQQIKTLITFHTYSELILYPYGYTYTDVPSDMTQDDFNVFKTMANTMAQTNGYTPQQ 250
Query: 61 DRYLGIWYHRPTDPSDSHWSYGSPKI 86
L I TD + W+YG KI
Sbjct: 251 ASDLYI-----TDGDMTDWAYGQHKI 271
>pdb|1OBR|A Chain A, Carboxypeptidase T
pdb|3V7Z|A Chain A, Carboxypeptidase T With Gemsa
pdb|4DUK|A Chain A, Carboxypeptidase T With L-benzylsuccinic Acid
Length = 326
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 1 MGIKQRIDLLISFSFFVLLTGPCYSQTDTLLPGQLLKDGDELVSAFGNFRMGFFSYMSSE 60
+G KQ+I LI+F + L Y T T +P + +D + N Y +
Sbjct: 191 VGGKQQIKTLITFHTYSELILYPYGYTYTDVPSDMTQDDFNVFKTMANTMAQTNGYTPQQ 250
Query: 61 DRYLGIWYHRPTDPSDSHWSYGSPKI 86
L I TD + W+YG KI
Sbjct: 251 ASDLYI-----TDGDMTDWAYGQHKI 271
>pdb|2B7U|A Chain A, Ribosome Inactivating Protein Type 1 From Charybdis
Maritima Agg
Length = 257
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 11 ISFSFFVLLTG--PCYSQTDTLLPGQLLKDGDELVSAFG 47
+ FSF +L + PCY + G+++K DEL++ G
Sbjct: 203 VRFSFMILKSNADPCYKFEPQTIYGKIIKTADELLNFLG 241
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 16/83 (19%)
Query: 221 RGEVLWTSGLFPHWRALDLDSDFHFSYTLNEKERYFNYSL-------NGNFTSF---PTL 270
EV W G + + L + S NE+ + +S+ NG ++ P L
Sbjct: 140 EAEVFWKDG-----QGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVL 194
Query: 271 QIDSRGSLTVTGALPISCPGSEG 293
Q D+ GS+T+TG P++ P G
Sbjct: 195 QQDAHGSVTITGQ-PLTFPPETG 216
>pdb|3PRT|A Chain A, Mutant Of The Carboxypeptidase T
Length = 323
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 1 MGIKQRIDLLISFSFFVLLTGPCYSQTDTLLPGQLLKDGDELVSAFGNFRMGFFSYMSSE 60
+G KQ+I LI+F + L YS T T +P + +D + N Y +
Sbjct: 191 VGGKQQIKTLITFHTYSELILYPYSYTYTDVPSDMTQDDFNVFKTMANTMAQTNGYTPQQ 250
Query: 61 DRYLGIWYHRPTDPSDSHWSYGSPKI 86
L I D W+YG KI
Sbjct: 251 GSDLYI-----ADGGMDDWAYGQHKI 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,432,320
Number of Sequences: 62578
Number of extensions: 562277
Number of successful extensions: 1382
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1374
Number of HSP's gapped (non-prelim): 35
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)