Query 045212
Match_columns 368
No_of_seqs 169 out of 1291
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 2.5E-29 5.4E-34 211.1 2.8 107 87-200 2-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 1E-24 2.3E-29 183.2 14.9 113 34-168 2-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 2.5E-23 5.3E-28 174.3 14.6 111 34-167 2-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.6 6E-15 1.3E-19 122.9 7.7 74 226-300 1-92 (110)
5 PF08276 PAN_2: PAN-like domai 99.5 1.1E-14 2.4E-19 110.5 5.4 53 315-367 4-62 (66)
6 cd00129 PAN_APPLE PAN/APPLE-li 99.2 2.2E-11 4.9E-16 95.9 5.6 51 315-367 8-61 (80)
7 cd01098 PAN_AP_plant Plant PAN 99.0 4.7E-10 1E-14 87.8 5.1 50 316-367 12-65 (84)
8 smart00108 B_lectin Bulb-type 98.5 4.6E-07 9.9E-12 75.7 8.8 84 105-228 23-111 (114)
9 cd00028 B_lectin Bulb-type man 98.4 9.4E-07 2E-11 74.1 8.5 84 106-229 24-113 (116)
10 PF01453 B_lectin: D-mannose b 98.3 7.1E-06 1.5E-10 68.8 11.4 100 40-169 12-114 (114)
11 smart00473 PAN_AP divergent su 98.2 3.6E-06 7.8E-11 64.2 5.9 48 316-365 4-57 (78)
12 cd01100 APPLE_Factor_XI_like S 97.5 0.00012 2.6E-09 56.3 4.3 43 322-366 10-57 (73)
13 PF00024 PAN_1: PAN domain Thi 93.4 0.13 2.9E-06 38.8 4.4 48 318-367 4-57 (79)
14 smart00223 APPLE APPLE domain. 90.6 0.42 9.1E-06 37.5 4.2 45 322-366 7-57 (79)
15 PF14295 PAN_4: PAN domain; PD 86.2 0.81 1.8E-05 31.6 2.9 22 332-353 16-37 (51)
16 PF08277 PAN_3: PAN-like domai 79.5 3.4 7.4E-05 30.8 4.3 32 332-367 20-51 (71)
17 cd01099 PAN_AP_HGF Subfamily o 78.9 3.2 6.8E-05 32.2 4.0 33 332-366 25-59 (80)
18 smart00605 CW CW domain. 72.7 6.4 0.00014 31.4 4.4 32 332-366 22-53 (94)
19 PRK11138 outer membrane biogen 64.6 1E+02 0.0022 30.8 12.0 57 104-164 121-186 (394)
20 PRK11138 outer membrane biogen 42.5 3.5E+02 0.0077 26.8 17.3 73 86-163 139-230 (394)
21 TIGR03300 assembly_YfgL outer 37.0 1.5E+02 0.0033 29.1 8.0 74 85-163 259-345 (377)
22 PF01436 NHL: NHL repeat; Int 36.2 66 0.0014 19.6 3.4 21 105-127 6-26 (28)
23 KOG4649 PQQ (pyrrolo-quinoline 32.9 74 0.0016 31.0 4.7 42 86-129 168-214 (354)
24 cd05845 Ig2_L1-CAM_like Second 29.9 83 0.0018 25.4 4.0 32 86-119 33-64 (95)
25 PF06006 DUF905: Bacterial pro 28.5 85 0.0018 24.0 3.5 23 106-129 23-48 (70)
26 PF07354 Sp38: Zona-pellucida- 27.8 75 0.0016 30.7 3.8 32 86-119 12-43 (271)
27 PF13360 PQQ_2: PQQ-like domai 26.2 4.1E+02 0.0088 23.6 8.4 74 86-164 55-148 (238)
28 smart00564 PQQ beta-propeller 25.4 1.4E+02 0.003 18.1 3.6 16 113-128 16-31 (33)
29 PF13360 PQQ_2: PQQ-like domai 25.3 1.6E+02 0.0034 26.3 5.5 47 113-164 3-62 (238)
30 PF11920 DUF3438: Protein of u 25.3 3.2E+02 0.007 26.8 7.7 86 10-119 4-97 (288)
31 cd00216 PQQ_DH Dehydrogenases 24.8 2.1E+02 0.0045 29.7 6.9 74 86-164 38-136 (488)
32 PHA00149 DNA encapsidation pro 22.2 3.1E+02 0.0066 27.2 6.8 48 43-111 234-281 (331)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.95 E-value=2.5e-29 Score=211.09 Aligned_cols=107 Identities=45% Similarity=0.743 Sum_probs=78.1
Q ss_pred CccEEEccCCCCCCCC--CcEEEEEcCCCcEEEEecCCCcEEEEe-e-CCC--CceEEEEeeCCCEEEEecCCCCCccce
Q 045212 87 NQPVWVANRNTPIADK--SGSLTIDSRDGNLKILRKGGNSIVVSS-V-QAM--GNTSAALYETGNFVLYETNPSGSMERE 160 (368)
Q Consensus 87 ~~vVW~Anr~~pv~~~--~~~l~l~~d~G~Lvl~d~~~~~~vWss-~-~~~--~~~~a~Lld~GNlVL~~~~~~~~~~~~ 160 (368)
++|||+|||+.|+... ..+|+|+.| |+|+|++ ..+..+|++ . .+. .+..|+|+|+|||||++ . .+ ++
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~d-GnLvl~~-~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d-~-~~---~~ 74 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSD-GNLVLYD-SNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYD-S-SG---NV 74 (114)
T ss_dssp --------TTEEEEECETTEEEEEETT-SEEEEEE-TTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEE-T-TS---EE
T ss_pred cccccccccccccccccccccceECCC-CeEEEEc-CCCCEEEEecccCCccccCeEEEEeCCCCEEEEe-e-cc---eE
Confidence 6899999999999532 379999999 9999999 888899999 4 333 47899999999999998 3 44 49
Q ss_pred eecccccCCCCcCCCCeeeeccCCCCceEEEEeCCCCCCC
Q 045212 161 LWQSFDYPTDILLPGMKLGLNLQTGHGWFLRSWTSEDSPA 200 (368)
Q Consensus 161 lWqSFd~PTDTLLPGq~L~~~~~tG~~~~LtSw~S~~dps 200 (368)
|||||||||||+||||+|+.+..+|.+..|+||++.+|||
T Consensus 75 lW~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 75 LWQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp EEESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred EEeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 9999999999999999999877777666799999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.92 E-value=1e-24 Score=183.19 Aligned_cols=113 Identities=42% Similarity=0.707 Sum_probs=95.8
Q ss_pred CcccCCCeEEeCCCeEEEEeeeCCCCCceEEEEEEecCCCCCCCCccCCCCCCCccEEEccCCCCCCCCCcEEEEEcCCC
Q 045212 34 QLLKDGDELVSAFGNFRMGFFSYMSSEDRYLGIWYHRPTDPSDSHWSYGSPKINQPVWVANRNTPIADKSGSLTIDSRDG 113 (368)
Q Consensus 34 ~~l~~~~~lvS~~g~F~lGF~~~~~~~~~~lgIw~~~~~~~~~~~~~~~~~~~~~vVW~Anr~~pv~~~~~~l~l~~d~G 113 (368)
+.|..|++|+|+++.|++|||.+......+++|||.+.+ .++||+||++.|.. ..++|.|+.| |
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~--------------~~~vW~snt~~~~~-~~~~l~l~~d-G 65 (116)
T cd00028 2 NPLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS--------------RTVVWVANRDNPSG-SSCTLTLQSD-G 65 (116)
T ss_pred cCcCCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC--------------CeEEEECCCCCCCC-CCEEEEEecC-C
Confidence 467889999999999999999987643388999997643 57999999999843 4579999999 9
Q ss_pred cEEEEecCCCcEEEEe-eCC-CCceEEEEeeCCCEEEEecCCCCCccceeecccccC
Q 045212 114 NLKILRKGGNSIVVSS-VQA-MGNTSAALYETGNFVLYETNPSGSMERELWQSFDYP 168 (368)
Q Consensus 114 ~Lvl~d~~~~~~vWss-~~~-~~~~~a~Lld~GNlVL~~~~~~~~~~~~lWqSFd~P 168 (368)
+|+|++ .+|.+||++ +.. ....+|+|+|+|||||++ .++ ++||||||||
T Consensus 66 nLvl~~-~~g~~vW~S~~~~~~~~~~~~L~ddGnlvl~~--~~~---~~~W~Sf~~P 116 (116)
T cd00028 66 NLVIYD-GSGTVVWSSNTTRVNGNYVLVLLDDGNLVLYD--SDG---NFLWQSFDYP 116 (116)
T ss_pred CeEEEc-CCCcEEEEecccCCCCceEEEEeCCCCEEEEC--CCC---CEEEcCCCCC
Confidence 999999 889999999 544 556789999999999998 354 4999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.91 E-value=2.5e-23 Score=174.25 Aligned_cols=111 Identities=41% Similarity=0.742 Sum_probs=94.7
Q ss_pred CcccCCCeEEeCCCeEEEEeeeCCCCCceEEEEEEecCCCCCCCCccCCCCCCCccEEEccCCCCCCCCCcEEEEEcCCC
Q 045212 34 QLLKDGDELVSAFGNFRMGFFSYMSSEDRYLGIWYHRPTDPSDSHWSYGSPKINQPVWVANRNTPIADKSGSLTIDSRDG 113 (368)
Q Consensus 34 ~~l~~~~~lvS~~g~F~lGF~~~~~~~~~~lgIw~~~~~~~~~~~~~~~~~~~~~vVW~Anr~~pv~~~~~~l~l~~d~G 113 (368)
+.|..|+.|+|+++.|++|||.+.. ...+++|||...+ .++||+|||+.|+... ++|.|+++ |
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~-q~dgnlV~~~~~~--------------~~~vW~snt~~~~~~~-~~l~l~~d-G 64 (114)
T smart00108 2 NTLSSGQTLVSGNSLFELGFFTLIM-QNDYNLILYKSSS--------------RTVVWVANRDNPVSDS-CTLTLQSD-G 64 (114)
T ss_pred cccCCCCEEecCCCcEeeeccccCC-CCCEEEEEEECCC--------------CcEEEECCCCCCCCCC-EEEEEeCC-C
Confidence 4678899999999999999999865 3678899997532 5799999999998753 79999999 9
Q ss_pred cEEEEecCCCcEEEEe-eC-CCCceEEEEeeCCCEEEEecCCCCCccceeeccccc
Q 045212 114 NLKILRKGGNSIVVSS-VQ-AMGNTSAALYETGNFVLYETNPSGSMERELWQSFDY 167 (368)
Q Consensus 114 ~Lvl~d~~~~~~vWss-~~-~~~~~~a~Lld~GNlVL~~~~~~~~~~~~lWqSFd~ 167 (368)
+|+|++ .++.+||++ +. ..+..+|+|+|+|||||++ ..+ ++|||||||
T Consensus 65 nLvl~~-~~g~~vW~S~t~~~~~~~~~~L~ddGnlvl~~--~~~---~~~W~Sf~~ 114 (114)
T smart00108 65 NLVLYD-GDGRVVWSSNTTGANGNYVLVLLDDGNLVIYD--SDG---NFLWQSFDY 114 (114)
T ss_pred CEEEEe-CCCCEEEEecccCCCCceEEEEeCCCCEEEEC--CCC---CEEeCCCCC
Confidence 999999 888999999 54 4556789999999999998 354 399999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.57 E-value=6e-15 Score=122.87 Aligned_cols=74 Identities=30% Similarity=0.530 Sum_probs=67.1
Q ss_pred EEcCC-----CCCcccccCCCcceEEEEEcCCeEEEEEEeCCCCCcccEEEEccCCCEE------------Eeeeccc-c
Q 045212 226 WTSGL-----FPHWRALDLDSDFHFSYTLNEKERYFNYSLNGNFTSFPTLQIDSRGSLT------------VTGALPI-S 287 (368)
Q Consensus 226 W~sg~-----~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~Ld~dG~lr------------~~w~~p~-~ 287 (368)
||+|+ |+++|+|.....+.+.|+.++++++|+|.+.+ .+.++|++||.+|+++ ++|.+|. +
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~-~s~~~r~~ld~~G~l~~~~w~~~~~~W~~~~~~p~d~ 79 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSN-SSVLSRLVLDSDGQLQRYIWNESTQSWSVFWSAPKDQ 79 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCC-CceEEEEEEeeeeEEEEEEEecCCCcEEEEEEecccC
Confidence 67777 67889998777888999999999999999987 8889999999999999 5688999 9
Q ss_pred CCCCCCCCCCCcc
Q 045212 288 CPGSEGCVRLSSC 300 (368)
Q Consensus 288 C~~~~~CG~~giC 300 (368)
|++|+.||+||+|
T Consensus 80 Cd~y~~CG~~g~C 92 (110)
T PF00954_consen 80 CDVYGFCGPNGIC 92 (110)
T ss_pred CCCccccCCccEe
Confidence 9999999999999
No 5
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.53 E-value=1.1e-14 Score=110.50 Aligned_cols=53 Identities=34% Similarity=0.783 Sum_probs=45.6
Q ss_pred CCCeEEecccccCCCCC------CCHHHHHHHHhcCCCeEEEEeecCCCCCceEEeecC
Q 045212 315 KRGFMSVDGFKFKGSNN------TSRDDCATKCLSNCSCIAFAITNENNNTACEIWSRG 367 (368)
Q Consensus 315 ~d~f~~~~~~~~p~~~~------~s~~~C~~~Cl~nCSC~A~~y~~~~~~~gC~lW~~~ 367 (368)
+|+|+++++|++|+++. .++++||++||+||||+||+|.+..++++|++|+++
T Consensus 4 ~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~ 62 (66)
T PF08276_consen 4 GDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGD 62 (66)
T ss_pred CCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCE
Confidence 47899999999999843 789999999999999999999731156779999985
No 6
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.20 E-value=2.2e-11 Score=95.91 Aligned_cols=51 Identities=22% Similarity=0.433 Sum_probs=45.3
Q ss_pred CCCeEEecccccCCCCCCCHHHHHHHHhc---CCCeEEEEeecCCCCCceEEeecC
Q 045212 315 KRGFMSVDGFKFKGSNNTSRDDCATKCLS---NCSCIAFAITNENNNTACEIWSRG 367 (368)
Q Consensus 315 ~d~f~~~~~~~~p~~~~~s~~~C~~~Cl~---nCSC~A~~y~~~~~~~gC~lW~~~ 367 (368)
+..|+++.++++|++...++++|+++|++ ||||.||+|.+ .+.||++|+++
T Consensus 8 ~g~fl~~~~~klpd~~~~s~~eC~~~Cl~~~~nCsC~Aya~~~--~~~gC~~W~~~ 61 (80)
T cd00129 8 AGTTLIKIALKIKTTKANTADECANRCEKNGLPFSCKAFVFAK--ARKQCLWFPFN 61 (80)
T ss_pred CCeEEEeecccCCcccccCHHHHHHHHhcCCCCCCceeeeccC--CCCCeEEecCc
Confidence 35799999999999988999999999999 99999999962 35689999986
No 7
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.00 E-value=4.7e-10 Score=87.75 Aligned_cols=50 Identities=34% Similarity=0.802 Sum_probs=42.5
Q ss_pred CCeEEecccccCCCCC----CCHHHHHHHHhcCCCeEEEEeecCCCCCceEEeecC
Q 045212 316 RGFMSVDGFKFKGSNN----TSRDDCATKCLSNCSCIAFAITNENNNTACEIWSRG 367 (368)
Q Consensus 316 d~f~~~~~~~~p~~~~----~s~~~C~~~Cl~nCSC~A~~y~~~~~~~gC~lW~~~ 367 (368)
++|++++++++|+... .++++|++.||+||+|+||+|. .++.+|++|.+.
T Consensus 12 ~~f~~~~~~~~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~~~--~~~~~C~~~~~~ 65 (84)
T cd01098 12 DGFLKLPDVKLPDNASAITAISLEECREACLSNCSCTAYAYN--NGSGGCLLWNGL 65 (84)
T ss_pred CEEEEeCCeeCCCchhhhccCCHHHHHHHHhcCCCcceeeec--CCCCeEEEEece
Confidence 5799999999998653 7999999999999999999996 245569999763
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.53 E-value=4.6e-07 Score=75.66 Aligned_cols=84 Identities=25% Similarity=0.456 Sum_probs=59.4
Q ss_pred EEEEEcCCCcEEEEecCC-CcEEEEe-eCC--CCceEEEEeeCCCEEEEecCCCCCccceeecccccCCCCcCCCCeeee
Q 045212 105 SLTIDSRDGNLKILRKGG-NSIVVSS-VQA--MGNTSAALYETGNFVLYETNPSGSMERELWQSFDYPTDILLPGMKLGL 180 (368)
Q Consensus 105 ~l~l~~d~G~Lvl~d~~~-~~~vWss-~~~--~~~~~a~Lld~GNlVL~~~~~~~~~~~~lWqSFd~PTDTLLPGq~L~~ 180 (368)
++.++.| |+||++. .. +.+||++ +.. .....+.|+++|||||++ .++. +||+|-..
T Consensus 23 ~~~~q~d-gnlV~~~-~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~--~~g~---~vW~S~t~------------- 82 (114)
T smart00108 23 TLIMQND-YNLILYK-SSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYD--GDGR---VVWSSNTT------------- 82 (114)
T ss_pred ccCCCCC-EEEEEEE-CCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEe--CCCC---EEEEeccc-------------
Confidence 4556678 9999998 44 5799999 422 233678999999999998 3443 89997110
Q ss_pred ccCCCCceEEEEeCCCCCCCceeEEEEEcCCCCceeEeee-CceeEEEc
Q 045212 181 NLQTGHGWFLRSWTSEDSPAEGEFTLNIDPNVSNQLIIQR-RGEVLWTS 228 (368)
Q Consensus 181 ~~~tG~~~~LtSw~S~~dps~G~fsL~l~~~g~~~l~~~~-~~~~YW~s 228 (368)
...+.+.+.|+++|+. ++++ ..++.|.+
T Consensus 83 ------------------~~~~~~~~~L~ddGnl--vl~~~~~~~~W~S 111 (114)
T smart00108 83 ------------------GANGNYVLVLLDDGNL--VIYDSDGNFLWQS 111 (114)
T ss_pred ------------------CCCCceEEEEeCCCCE--EEECCCCCEEeCC
Confidence 1346788999999984 4454 34688876
No 9
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.44 E-value=9.4e-07 Score=74.05 Aligned_cols=84 Identities=25% Similarity=0.450 Sum_probs=59.3
Q ss_pred EEEEc-CCCcEEEEecCC-CcEEEEe-eCC--CCceEEEEeeCCCEEEEecCCCCCccceeecccccCCCCcCCCCeeee
Q 045212 106 LTIDS-RDGNLKILRKGG-NSIVVSS-VQA--MGNTSAALYETGNFVLYETNPSGSMERELWQSFDYPTDILLPGMKLGL 180 (368)
Q Consensus 106 l~l~~-d~G~Lvl~d~~~-~~~vWss-~~~--~~~~~a~Lld~GNlVL~~~~~~~~~~~~lWqSFd~PTDTLLPGq~L~~ 180 (368)
+..+. + |+||++. .. +.+||++ +.. .....+.|+++|||||++ .++. ++|+|-..
T Consensus 24 ~~~q~~d-gnlv~~~-~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~--~~g~---~vW~S~~~------------- 83 (116)
T cd00028 24 LIMQSRD-YNLILYK-GSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYD--GSGT---VVWSSNTT------------- 83 (116)
T ss_pred CCCCCCe-EEEEEEe-CCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEc--CCCc---EEEEeccc-------------
Confidence 44555 7 9999998 43 5799999 432 345678999999999998 3553 89997210
Q ss_pred ccCCCCceEEEEeCCCCCCCceeEEEEEcCCCCceeEeee-CceeEEEcC
Q 045212 181 NLQTGHGWFLRSWTSEDSPAEGEFTLNIDPNVSNQLIIQR-RGEVLWTSG 229 (368)
Q Consensus 181 ~~~tG~~~~LtSw~S~~dps~G~fsL~l~~~g~~~l~~~~-~~~~YW~sg 229 (368)
...+.+.+.|+++|+. ++++ ...+.|.+.
T Consensus 84 ------------------~~~~~~~~~L~ddGnl--vl~~~~~~~~W~Sf 113 (116)
T cd00028 84 ------------------RVNGNYVLVLLDDGNL--VLYDSDGNFLWQSF 113 (116)
T ss_pred ------------------CCCCceEEEEeCCCCE--EEECCCCCEEEcCC
Confidence 0246788999999984 4454 356788764
No 10
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.34 E-value=7.1e-06 Score=68.80 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=66.5
Q ss_pred CeEEeCCCeEEEEeeeCCCCCceEEEEEEecCCCCCCCCccCCCCCCCccEEEc-cCCCCCCCCCcEEEEEcCCCcEEEE
Q 045212 40 DELVSAFGNFRMGFFSYMSSEDRYLGIWYHRPTDPSDSHWSYGSPKINQPVWVA-NRNTPIADKSGSLTIDSRDGNLKIL 118 (368)
Q Consensus 40 ~~lvS~~g~F~lGF~~~~~~~~~~lgIw~~~~~~~~~~~~~~~~~~~~~vVW~A-nr~~pv~~~~~~l~l~~d~G~Lvl~ 118 (368)
+.+.+.+|.+.|-|...++ |.| |.. ..++||.. +...... ..+.++|+++ |||||+
T Consensus 12 ~p~~~~s~~~~L~l~~dGn-----Lvl-~~~---------------~~~~iWss~~t~~~~~-~~~~~~L~~~-GNlvl~ 68 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDGN-----LVL-YDS---------------NGSVIWSSNNTSGRGN-SGCYLVLQDD-GNLVLY 68 (114)
T ss_dssp EEEEECETTEEEEEETTSE-----EEE-EET---------------TTEEEEE--S-TTSS--SSEEEEEETT-SEEEEE
T ss_pred cccccccccccceECCCCe-----EEE-EcC---------------CCCEEEEecccCCccc-cCeEEEEeCC-CCEEEE
Confidence 4565655889999887664 323 432 34679999 4444332 3578999999 999999
Q ss_pred ecCCCcEEEEeeCCCCceEEEEee--CCCEEEEecCCCCCccceeecccccCC
Q 045212 119 RKGGNSIVVSSVQAMGNTSAALYE--TGNFVLYETNPSGSMERELWQSFDYPT 169 (368)
Q Consensus 119 d~~~~~~vWss~~~~~~~~a~Lld--~GNlVL~~~~~~~~~~~~lWqSFd~PT 169 (368)
| ..+.++|+|......+.+.+++ .||++ +. ... .+.|.|=+.|+
T Consensus 69 d-~~~~~lW~Sf~~ptdt~L~~q~l~~~~~~-~~--~~~---~~sw~s~~dps 114 (114)
T PF01453_consen 69 D-SSGNVLWQSFDYPTDTLLPGQKLGDGNVT-GK--NDS---LTSWSSNTDPS 114 (114)
T ss_dssp E-TTSEEEEESTTSSS-EEEEEET--TSEEE-EE--STS---SEEEESS----
T ss_pred e-ecceEEEeecCCCccEEEeccCcccCCCc-cc--cce---EEeECCCCCCC
Confidence 9 8999999994334556777777 89999 64 232 38999877763
No 11
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.19 E-value=3.6e-06 Score=64.17 Aligned_cols=48 Identities=38% Similarity=0.863 Sum_probs=39.9
Q ss_pred CCeEEecccccCCCCC-----CCHHHHHHHHhc-CCCeEEEEeecCCCCCceEEee
Q 045212 316 RGFMSVDGFKFKGSNN-----TSRDDCATKCLS-NCSCIAFAITNENNNTACEIWS 365 (368)
Q Consensus 316 d~f~~~~~~~~p~~~~-----~s~~~C~~~Cl~-nCSC~A~~y~~~~~~~gC~lW~ 365 (368)
..|.+++++.+++... .++++|++.|++ +|+|.||.|. ..+.+|.+|.
T Consensus 4 ~~f~~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~~~~C~s~~y~--~~~~~C~l~~ 57 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIVISVASLEECASKCLNSNCSCRSFTYN--NGTKGCLLWS 57 (78)
T ss_pred ceeEEecCccCCCCcceeEcCCCHHHHHHHhCCCCCceEEEEEc--CCCCEEEEee
Confidence 4688899999885533 699999999999 9999999995 2355699998
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.52 E-value=0.00012 Score=56.26 Aligned_cols=43 Identities=23% Similarity=0.631 Sum_probs=32.4
Q ss_pred cccccCCCCC-----CCHHHHHHHHhcCCCeEEEEeecCCCCCceEEeec
Q 045212 322 DGFKFKGSNN-----TSRDDCATKCLSNCSCIAFAITNENNNTACEIWSR 366 (368)
Q Consensus 322 ~~~~~p~~~~-----~s~~~C~~~Cl~nCSC~A~~y~~~~~~~gC~lW~~ 366 (368)
++++++..+. .+.++|++.|+.+|+|.||.|. .....|+++..
T Consensus 10 ~~~~~~g~d~~~~~~~s~~~Cq~~C~~~~~C~afT~~--~~~~~C~lk~~ 57 (73)
T cd01100 10 SNVDFRGGDLSTVFASSAEQCQAACTADPGCLAFTYN--TKSKKCFLKSS 57 (73)
T ss_pred CCCccccCCcceeecCCHHHHHHHcCCCCCceEEEEE--CCCCeEEcccC
Confidence 4555554332 6899999999999999999996 23344999875
No 13
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=93.39 E-value=0.13 Score=38.77 Aligned_cols=48 Identities=25% Similarity=0.611 Sum_probs=35.9
Q ss_pred eEEecccccCCCCC-----CCHHHHHHHHhcCCC-eEEEEeecCCCCCceEEeecC
Q 045212 318 FMSVDGFKFKGSNN-----TSRDDCATKCLSNCS-CIAFAITNENNNTACEIWSRG 367 (368)
Q Consensus 318 f~~~~~~~~p~~~~-----~s~~~C~~~Cl~nCS-C~A~~y~~~~~~~gC~lW~~~ 367 (368)
|.++++..+..... .++++|.+.|+.+=. |.+|.|. .....|.|...+
T Consensus 4 f~~~~~~~l~~~~~~~~~v~s~~~C~~~C~~~~~~C~s~~y~--~~~~~C~L~~~~ 57 (79)
T PF00024_consen 4 FERIPGYRLSGHSIKEINVPSLEECAQLCLNEPRRCKSFNYD--PSSKTCYLSSSD 57 (79)
T ss_dssp EEEEEEEEEESCEEEEEEESSHHHHHHHHHHSTT-ESEEEEE--TTTTEEEEECSS
T ss_pred eEEECCEEEeCCcceEEcCCCHHHHHhhcCcCcccCCeEEEE--CCCCEEEEcCCC
Confidence 66666666554322 599999999999999 9999996 234459998764
No 14
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=90.62 E-value=0.42 Score=37.47 Aligned_cols=45 Identities=24% Similarity=0.568 Sum_probs=32.3
Q ss_pred cccccCCCCC-----CCHHHHHHHHhcCCCeEEEEeec-CCCCCceEEeec
Q 045212 322 DGFKFKGSNN-----TSRDDCATKCLSNCSCIAFAITN-ENNNTACEIWSR 366 (368)
Q Consensus 322 ~~~~~p~~~~-----~s~~~C~~~Cl~nCSC~A~~y~~-~~~~~gC~lW~~ 366 (368)
++++++..+. .+.++|++.|..+=.|.+|.|.. ......|++-..
T Consensus 7 ~~~df~G~Dl~~~~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 7 KNVDFRGSDINTVYVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred cCccccCceeeeeecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 4555655443 78999999999999999999963 111126988643
No 15
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=86.20 E-value=0.81 Score=31.62 Aligned_cols=22 Identities=27% Similarity=0.783 Sum_probs=17.4
Q ss_pred CCHHHHHHHHhcCCCeEEEEee
Q 045212 332 TSRDDCATKCLSNCSCIAFAIT 353 (368)
Q Consensus 332 ~s~~~C~~~Cl~nCSC~A~~y~ 353 (368)
.+.++|.+.|..+=.|.+|.|.
T Consensus 16 ~s~~~C~~~C~~~~~C~~~~~~ 37 (51)
T PF14295_consen 16 SSPEECQAACAADPGCQAFTFN 37 (51)
T ss_dssp --HHHHHHHHHTSTT--EEEEE
T ss_pred CCHHHHHHHccCCCCCCEEEEE
Confidence 6899999999999999999996
No 16
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=79.52 E-value=3.4 Score=30.81 Aligned_cols=32 Identities=31% Similarity=0.757 Sum_probs=27.3
Q ss_pred CCHHHHHHHHhcCCCeEEEEeecCCCCCceEEeecC
Q 045212 332 TSRDDCATKCLSNCSCIAFAITNENNNTACEIWSRG 367 (368)
Q Consensus 332 ~s~~~C~~~Cl~nCSC~A~~y~~~~~~~gC~lW~~~ 367 (368)
.+.++|-+.|..+=.|.++.+ +..+|.++.-+
T Consensus 20 ~sw~~Cv~~C~~~~~C~la~~----~~~~C~~y~~~ 51 (71)
T PF08277_consen 20 TSWDDCVQKCYNDENCVLAYF----DSGKCYLYNYG 51 (71)
T ss_pred CCHHHHhHHhCCCCEEEEEEe----CCCCEEEEEcC
Confidence 788999999999999999998 35569998643
No 17
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=78.86 E-value=3.2 Score=32.23 Aligned_cols=33 Identities=24% Similarity=0.636 Sum_probs=26.7
Q ss_pred CCHHHHHHHHhc--CCCeEEEEeecCCCCCceEEeec
Q 045212 332 TSRDDCATKCLS--NCSCIAFAITNENNNTACEIWSR 366 (368)
Q Consensus 332 ~s~~~C~~~Cl~--nCSC~A~~y~~~~~~~gC~lW~~ 366 (368)
.++++|.+.|++ +=.|.+|.|. .....|.|=..
T Consensus 25 ~s~~~C~~~C~~~~~f~CrSf~y~--~~~~~C~L~~~ 59 (80)
T cd01099 25 ASLEECLRKCLEETEFTCRSFNYN--YKSKECILSDE 59 (80)
T ss_pred CCHHHHHHHhCCCCCceEeEEEEE--cCCCEEEEeCC
Confidence 689999999999 8999999995 24444987544
No 18
>smart00605 CW CW domain.
Probab=72.71 E-value=6.4 Score=31.36 Aligned_cols=32 Identities=25% Similarity=0.608 Sum_probs=26.0
Q ss_pred CCHHHHHHHHhcCCCeEEEEeecCCCCCceEEeec
Q 045212 332 TSRDDCATKCLSNCSCIAFAITNENNNTACEIWSR 366 (368)
Q Consensus 332 ~s~~~C~~~Cl~nCSC~A~~y~~~~~~~gC~lW~~ 366 (368)
.+.++|.+.|..+..|+.+... ....|.++.-
T Consensus 22 ~sw~~Ci~~C~~~~~Cvlay~~---~~~~C~~f~~ 53 (94)
T smart00605 22 LSWDECIQKCYEDSNCVLAYGN---SSETCYLFSY 53 (94)
T ss_pred CCHHHHHHHHhCCCceEEEecC---CCCceEEEEc
Confidence 6889999999999999987663 2356998764
No 19
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=64.65 E-value=1e+02 Score=30.77 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=34.7
Q ss_pred cEEEEEcCCCcEEEEecCCCcEEEEe-eCC---CC-----ceEEEEeeCCCEEEEecCCCCCccceeecc
Q 045212 104 GSLTIDSRDGNLKILRKGGNSIVVSS-VQA---MG-----NTSAALYETGNFVLYETNPSGSMERELWQS 164 (368)
Q Consensus 104 ~~l~l~~d~G~Lvl~d~~~~~~vWss-~~~---~~-----~~~a~Lld~GNlVL~~~~~~~~~~~~lWqS 164 (368)
..+.+...+|.|+-.|..+|.++|+. ... .. ..+..-..+|.|+-+| ..+|+ ++|+-
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald-~~tG~---~~W~~ 186 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALN-ESDGA---VKWTV 186 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEE-ccCCC---Eeeee
Confidence 34555543388887773479999988 221 11 1122334567788888 55664 89985
No 20
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=42.45 E-value=3.5e+02 Score=26.80 Aligned_cols=73 Identities=14% Similarity=0.294 Sum_probs=42.1
Q ss_pred CCccEEEccCCC-----CCCCCCcEEEEEcCCCcEEEEecCCCcEEEEe-eCC-------CCc------eEEEEeeCCCE
Q 045212 86 INQPVWVANRNT-----PIADKSGSLTIDSRDGNLKILRKGGNSIVVSS-VQA-------MGN------TSAALYETGNF 146 (368)
Q Consensus 86 ~~~vVW~Anr~~-----pv~~~~~~l~l~~d~G~Lvl~d~~~~~~vWss-~~~-------~~~------~~a~Lld~GNl 146 (368)
..+++|..+... |+... ..+.+...+|.|+-.|..+|.++|+. ... ... .+..-..+|.+
T Consensus 139 tG~~~W~~~~~~~~~ssP~v~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v 217 (394)
T PRK11138 139 DGEVAWQTKVAGEALSRPVVSD-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRV 217 (394)
T ss_pred CCCCcccccCCCceecCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEE
Confidence 456788876544 33222 34444443288888884579999997 211 011 11223456777
Q ss_pred EEEecCCCCCccceeec
Q 045212 147 VLYETNPSGSMERELWQ 163 (368)
Q Consensus 147 VL~~~~~~~~~~~~lWq 163 (368)
+-.+ ..+|. .+|+
T Consensus 218 ~a~d-~~~G~---~~W~ 230 (394)
T PRK11138 218 SAVL-MEQGQ---LIWQ 230 (394)
T ss_pred EEEE-ccCCh---hhhe
Confidence 7777 44554 8997
No 21
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=36.98 E-value=1.5e+02 Score=29.06 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCccEE---EccCCCCCCCCCcEEEEEcCCCcEEEEecCCCcEEEEe-eCC---------CCceEEEEeeCCCEEEEec
Q 045212 85 KINQPVW---VANRNTPIADKSGSLTIDSRDGNLKILRKGGNSIVVSS-VQA---------MGNTSAALYETGNFVLYET 151 (368)
Q Consensus 85 ~~~~vVW---~Anr~~pv~~~~~~l~l~~d~G~Lvl~d~~~~~~vWss-~~~---------~~~~~a~Lld~GNlVL~~~ 151 (368)
...+++| ......|+....-....+.+ |.|+..|..+|.++|+. ... .+........+|.|.+.+
T Consensus 259 ~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~-G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d- 336 (377)
T TIGR03300 259 RSGRVLWKRDASSYQGPAVDDNRLYVTDAD-GVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLS- 336 (377)
T ss_pred CCCcEEEeeccCCccCceEeCCEEEEECCC-CeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEE-
Q ss_pred CCCCCccceeec
Q 045212 152 NPSGSMERELWQ 163 (368)
Q Consensus 152 ~~~~~~~~~lWq 163 (368)
..+++ ++|+
T Consensus 337 ~~tG~---~~~~ 345 (377)
T TIGR03300 337 REDGS---FVAR 345 (377)
T ss_pred CCCCC---EEEE
No 22
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=36.23 E-value=66 Score=19.61 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=14.4
Q ss_pred EEEEEcCCCcEEEEecCCCcEEE
Q 045212 105 SLTIDSRDGNLKILRKGGNSIVV 127 (368)
Q Consensus 105 ~l~l~~d~G~Lvl~d~~~~~~vW 127 (368)
-+.+..+ |++++.| ..+.-||
T Consensus 6 gvav~~~-g~i~VaD-~~n~rV~ 26 (28)
T PF01436_consen 6 GVAVDSD-GNIYVAD-SGNHRVQ 26 (28)
T ss_dssp EEEEETT-SEEEEEE-CCCTEEE
T ss_pred EEEEeCC-CCEEEEE-CCCCEEE
Confidence 3667777 8888888 6555444
No 23
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.89 E-value=74 Score=31.01 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=32.3
Q ss_pred CCccEEEccCCCCCCCC----CcEEEE-EcCCCcEEEEecCCCcEEEEe
Q 045212 86 INQPVWVANRNTPIADK----SGSLTI-DSRDGNLKILRKGGNSIVVSS 129 (368)
Q Consensus 86 ~~~vVW~Anr~~pv~~~----~~~l~l-~~d~G~Lvl~d~~~~~~vWss 129 (368)
+.+..|.|.|..|+-.+ +..+.+ +-| |+|.-.+ +.|+.||.-
T Consensus 168 ~~~~~w~~~~~~PiF~splcv~~sv~i~~Vd-G~l~~f~-~sG~qvwr~ 214 (354)
T KOG4649|consen 168 SSTEFWAATRFGPIFASPLCVGSSVIITTVD-GVLTSFD-ESGRQVWRP 214 (354)
T ss_pred CcceehhhhcCCccccCceeccceEEEEEec-cEEEEEc-CCCcEEEee
Confidence 56889999999999754 233444 456 9998888 889999976
No 24
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=29.91 E-value=83 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCccEEEccCCCCCCCCCcEEEEEcCCCcEEEEe
Q 045212 86 INQPVWVANRNTPIADKSGSLTIDSRDGNLKILR 119 (368)
Q Consensus 86 ~~~vVW~Anr~~pv~~~~~~l~l~~d~G~Lvl~d 119 (368)
..++.|+-+....+. ....+.++.+ |+|.+.+
T Consensus 33 ~P~i~W~~~~~~~i~-~~~Ri~~~~~-GnL~fs~ 64 (95)
T cd05845 33 PLRIYWMNSDLLHIT-QDERVSMGQN-GNLYFAN 64 (95)
T ss_pred CCEEEEECCCCcccc-ccccEEECCC-ceEEEEE
Confidence 567889955444454 3468888888 9998865
No 25
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=28.47 E-value=85 Score=24.04 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=14.4
Q ss_pred EEEEcCCC---cEEEEecCCCcEEEEe
Q 045212 106 LTIDSRDG---NLKILRKGGNSIVVSS 129 (368)
Q Consensus 106 l~l~~d~G---~Lvl~d~~~~~~vWss 129 (368)
+.|.+|+| .||++| .+|..||..
T Consensus 23 V~IeDdqg~HfRlvvRd-~~g~mvWRa 48 (70)
T PF06006_consen 23 VFIEDDQGTHFRLVVRD-TEGQMVWRA 48 (70)
T ss_dssp EEEES-SSS--EEEEE--SS--EEEEE
T ss_pred eeeccCCCCeEEEEEEc-CCCcEEEEe
Confidence 55555555 688888 889999988
No 26
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=27.84 E-value=75 Score=30.69 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=28.0
Q ss_pred CCccEEEccCCCCCCCCCcEEEEEcCCCcEEEEe
Q 045212 86 INQPVWVANRNTPIADKSGSLTIDSRDGNLKILR 119 (368)
Q Consensus 86 ~~~vVW~Anr~~pv~~~~~~l~l~~d~G~Lvl~d 119 (368)
+++..|+...+.++.++ +.+.|++. |.|++.+
T Consensus 12 DP~y~W~GP~g~~l~gn-~~~nIT~T-G~L~~~~ 43 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGN-SYVNITET-GKLMFKN 43 (271)
T ss_pred CCceEEECCCCcccCCC-CeEEEccC-ceEEeec
Confidence 57789999999999976 58999999 9999976
No 27
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=26.22 E-value=4.1e+02 Score=23.57 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=43.6
Q ss_pred CCccEEEccCCCCCC-----CCCcEEEEEcCCCcEEEEecCCCcEEEEe--eC--CCC-----------ceEEEEeeCCC
Q 045212 86 INQPVWVANRNTPIA-----DKSGSLTIDSRDGNLKILRKGGNSIVVSS--VQ--AMG-----------NTSAALYETGN 145 (368)
Q Consensus 86 ~~~vVW~Anr~~pv~-----~~~~~l~l~~d~G~Lvl~d~~~~~~vWss--~~--~~~-----------~~~a~Lld~GN 145 (368)
..+++|...-+.++. ..+..+..+.+ |.|...|..+|.++|.. .. ... ........+|.
T Consensus 55 tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (238)
T PF13360_consen 55 TGKVLWRFDLPGPISGAPVVDGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK 133 (238)
T ss_dssp TSEEEEEEECSSCGGSGEEEETTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE
T ss_pred CCCEEEEeeccccccceeeecccccccccce-eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc
Confidence 567899887655433 22223444456 77877775588999994 21 011 11122233788
Q ss_pred EEEEecCCCCCccceeecc
Q 045212 146 FVLYETNPSGSMERELWQS 164 (368)
Q Consensus 146 lVL~~~~~~~~~~~~lWqS 164 (368)
|+..| ..+|. .+|+-
T Consensus 134 l~~~d-~~tG~---~~w~~ 148 (238)
T PF13360_consen 134 LVALD-PKTGK---LLWKY 148 (238)
T ss_dssp EEEEE-TTTTE---EEEEE
T ss_pred EEEEe-cCCCc---EEEEe
Confidence 88888 55664 88875
No 28
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=25.37 E-value=1.4e+02 Score=18.14 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=7.6
Q ss_pred CcEEEEecCCCcEEEE
Q 045212 113 GNLKILRKGGNSIVVS 128 (368)
Q Consensus 113 G~Lvl~d~~~~~~vWs 128 (368)
|.|+-.|..+|.++|.
T Consensus 16 g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 16 GTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEEcccCcEEEE
Confidence 5555444224555554
No 29
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=25.34 E-value=1.6e+02 Score=26.34 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=28.2
Q ss_pred CcEEEEecC-CCcEEEEeeC--CCCceE----------EEEeeCCCEEEEecCCCCCccceeecc
Q 045212 113 GNLKILRKG-GNSIVVSSVQ--AMGNTS----------AALYETGNFVLYETNPSGSMERELWQS 164 (368)
Q Consensus 113 G~Lvl~d~~-~~~~vWss~~--~~~~~~----------a~Lld~GNlVL~~~~~~~~~~~~lWqS 164 (368)
|.|...| . +|..+|+... .....+ .....+|+|+..| ..+| +++|+-
T Consensus 3 g~l~~~d-~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d-~~tG---~~~W~~ 62 (238)
T PF13360_consen 3 GTLSALD-PRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALD-AKTG---KVLWRF 62 (238)
T ss_dssp SEEEEEE-TTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEE-TTTS---EEEEEE
T ss_pred CEEEEEE-CCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEE-CCCC---CEEEEe
Confidence 7787788 5 7888998821 111112 1224667777777 4455 488875
No 30
>PF11920 DUF3438: Protein of unknown function (DUF3438); InterPro: IPR021844 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=25.33 E-value=3.2e+02 Score=26.75 Aligned_cols=86 Identities=17% Similarity=0.233 Sum_probs=47.7
Q ss_pred hhHHHHHHhhhCcccccc-----cccCCCCcccCCC-eEEeCCCeEEEEeeeCCCCCceEEEEEEecCCCCCCCCccCCC
Q 045212 10 LISFSFFVLLTGPCYSQT-----DTLLPGQLLKDGD-ELVSAFGNFRMGFFSYMSSEDRYLGIWYHRPTDPSDSHWSYGS 83 (368)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-----~~l~~g~~l~~~~-~lvS~~g~F~lGF~~~~~~~~~~lgIw~~~~~~~~~~~~~~~~ 83 (368)
+++++++++++.+.+.+. +.+..-=.|..|+ .+|.-+.+-..||=..-+.. |-| .++
T Consensus 4 ~~~~~~l~~~~~~~a~a~E~~~Wer~Pl~V~L~VgqERiV~~~~nVrVg~P~~l~~k---Lrv--qS~------------ 66 (288)
T PF11920_consen 4 LLLLLLLLLLLASAAQAVELMKWERIPLAVPLPVGQERIVFFDKNVRVGVPASLNGK---LRV--QSA------------ 66 (288)
T ss_pred hHHHHHHHHHhcccccchHhhhccCCceeeecCCCcEEEEEcCcCeEEcCChhhhhc---EEE--eee------------
Confidence 344444444444444554 3445555666675 57777777788774322211 222 111
Q ss_pred CCCCccEEEccCCCCCCCCCcEEEEE--cCCCcEEEEe
Q 045212 84 PKINQPVWVANRNTPIADKSGSLTID--SRDGNLKILR 119 (368)
Q Consensus 84 ~~~~~vVW~Anr~~pv~~~~~~l~l~--~d~G~Lvl~d 119 (368)
..++-|-|+..-|. ..|+++ ++ |.++|.|
T Consensus 67 --gGavYL~A~e~f~~----tRLqlq~~~~-GeiILLD 97 (288)
T PF11920_consen 67 --GGAVYLKASEPFPP----TRLQLQDVES-GEIILLD 97 (288)
T ss_pred --CCEEEEeccCCCCc----ceEEEEEcCC-CcEEEEE
Confidence 45677878775553 245554 45 8888887
No 31
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=24.81 E-value=2.1e+02 Score=29.71 Aligned_cols=74 Identities=14% Similarity=0.231 Sum_probs=43.4
Q ss_pred CCccEEEccCC-------CCCCCCCcEEEEEcCCCcEEEEecCCCcEEEEe-eCCC----------------C-ceEEEE
Q 045212 86 INQPVWVANRN-------TPIADKSGSLTIDSRDGNLKILRKGGNSIVVSS-VQAM----------------G-NTSAAL 140 (368)
Q Consensus 86 ~~~vVW~Anr~-------~pv~~~~~~l~l~~d~G~Lvl~d~~~~~~vWss-~~~~----------------~-~~~a~L 140 (368)
..+++|..+-. .|+... .++-+...+|.|+-.|...|.++|+. .... . ..+..-
T Consensus 38 ~~~~~W~~~~~~~~~~~~sPvv~~-g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~ 116 (488)
T cd00216 38 KLKVAWTFSTGDERGQEGTPLVVD-GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFG 116 (488)
T ss_pred cceeeEEEECCCCCCcccCCEEEC-CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEe
Confidence 35677876543 355433 45555543388887784578999997 2111 0 111112
Q ss_pred eeCCCEEEEecCCCCCccceeecc
Q 045212 141 YETGNFVLYETNPSGSMERELWQS 164 (368)
Q Consensus 141 ld~GNlVL~~~~~~~~~~~~lWqS 164 (368)
..+|.++-+| ..+|+ .+|+-
T Consensus 117 ~~~g~v~AlD-~~TG~---~~W~~ 136 (488)
T cd00216 117 TFDGRLVALD-AETGK---QVWKF 136 (488)
T ss_pred cCCCeEEEEE-CCCCC---Eeeee
Confidence 3467888887 55664 89984
No 32
>PHA00149 DNA encapsidation protein
Probab=22.23 E-value=3.1e+02 Score=27.18 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=35.1
Q ss_pred EeCCCeEEEEeeeCCCCCceEEEEEEecCCCCCCCCccCCCCCCCccEEEccCCCCCCCCCcEEEEEcC
Q 045212 43 VSAFGNFRMGFFSYMSSEDRYLGIWYHRPTDPSDSHWSYGSPKINQPVWVANRNTPIADKSGSLTIDSR 111 (368)
Q Consensus 43 vS~~g~F~lGF~~~~~~~~~~lgIw~~~~~~~~~~~~~~~~~~~~~vVW~Anr~~pv~~~~~~l~l~~d 111 (368)
.+.++.|.+.++.+++ |++||..- .+-.||.|.+-.|=.. ....|+.+
T Consensus 234 ~~~~~k~~ysi~~~g~----~~~vwvd~---------------~~~~~y~~~~~dp~~~--~v~alt~~ 281 (331)
T PHA00149 234 RSKNSKFVFSIRYNGN----YYTVWVDL---------------TQMLVYIATAHDPSTK--RVYALTVD 281 (331)
T ss_pred hccCceEEEEEEECCe----EEEEEEEc---------------cceEEEEecccCCCCC--ceEEEEcc
Confidence 4789999999998764 89999642 4578999998877543 23555554
Done!