BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045216
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S2C|A Chain A, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|B Chain B, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|C Chain C, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|D Chain D, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|E Chain E, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|F Chain F, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|G Chain G, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|H Chain H, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|I Chain I, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|J Chain J, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|K Chain K, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|L Chain L, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
Length = 484
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 9 EASIRPWEDRPGHFGDIWMYWTDDGLGYFEF---------------------LKEALDSI 47
E I P + RP F W + G EF L EAL +
Sbjct: 79 EDGIGPKDQRPVRFDLAWQQEETNRFGTDEFIEYCREIGAEPYISINMGTGTLDEALHWL 138
Query: 48 EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGK 85
E+ N+ + +R GHP+P+++++ IGNE G+
Sbjct: 139 EYCNGKGNTYYAQLRRKYGHPEPYNVKFWGIGNEMYGE 176
>pdb|2Y2W|A Chain A, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|B Chain B, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|C Chain C, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|D Chain D, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|E Chain E, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|F Chain F, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum
Length = 574
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 40 LKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNE 81
LK ALD +E+ P + W R A G +P D++ IGNE
Sbjct: 174 LKAALDELEYVNGAPGTAWADQRVANGIEEPMDIKMWCIGNE 215
>pdb|4ATW|A Chain A, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|B Chain B, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|C Chain C, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|D Chain D, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|E Chain E, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|F Chain F, The Crystal Structure Of Arabinofuranosidase
Length = 482
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 9 EASIRPWEDRPGHFGDIWMYWTDDGLGYFEF---------------------LKEALDSI 47
E I P + RP F W + G EF L EAL +
Sbjct: 79 EDGIGPKDQRPVRFDLAWQQEETNRFGTDEFIEYCREIGAEPYISINMGTGTLDEALHWL 138
Query: 48 EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGK 85
E+ N+ + +R GHP+P+++++ IGNE G+
Sbjct: 139 EYCNGKGNTYYAQLRRKYGHPEPYNVKFWGIGNEMYGE 176
>pdb|3UG3|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG4|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG5|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
Length = 504
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 9 EASIRPWEDRPGHFGDIWMYWTDDGLGYFEF---------------------LKEALDSI 47
E I P + RP F W + G EF L EAL +
Sbjct: 99 EDGIGPKDQRPVRFDLAWQQEETNRFGTDEFIEYCREIGAEPYISINMGTGTLDEALHWL 158
Query: 48 EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCGK 85
E+ N+ + +R GHP+P+++++ IGNE G+
Sbjct: 159 EYCNGKGNTYYAQLRRKYGHPEPYNVKFWGIGNEMYGE 196
>pdb|2C6J|A Chain A, Structure Of P. Knowlesi Dbl Domain Capable Of Binding
Human Duffy Antigen
Length = 338
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 20 GHFGDIWMYWTDDGLGYFEFLKEALDSI----EFARSDPNSTWGSVRAAMGHPDPFDLR 74
G FGDI M +G+GY + ++ L SI E A+ D W + + F LR
Sbjct: 107 GDFGDIIMGTNMEGIGYSQVVENNLRSIFGTDEKAKQDRKQWWNESKEHIWRAMMFSLR 165
>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
Length = 995
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 25 IWMYWTDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCG 84
IW Y DD + L E LD E A PNS+ + P +Y A + D
Sbjct: 237 IWFYGDDDPVHRLRVLSEYLDXFE-ASPSPNSSKIKFQKLFSEPVRLVEKYPAGRDGDLK 295
Query: 85 KKN 87
KK+
Sbjct: 296 KKH 298
>pdb|2VRK|A Chain A, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|B Chain B, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|C Chain C, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
Length = 496
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 33 GLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNEDCG 84
G G + E ++ I F P + W R G P+ ++Y +GNE+ G
Sbjct: 131 GSGTVQEXSEWVEYITFDGESPXANW---RRENGREKPWRIKYWGVGNENWG 179
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 34 LGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGN 80
+GYF + LDS+ +A+S + GSV +PD + VA+ +
Sbjct: 121 MGYFLLFESMLDSVLYAKSKYLAKGGSV-----YPDICTISLVAVSD 162
>pdb|3HVM|A Chain A, Agmatine Deiminase From Helicobacter Pylori
Length = 330
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 30 TDDGLGYFEFLKEALDSIEFARSDPNSTWG 59
T+D +GY E LK L +E A+ D N TW
Sbjct: 55 TNDTIGY-EMLKN-LPGVEIAKVDTNDTWA 82
>pdb|2VRQ|A Chain A, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|B Chain B, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|C Chain C, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
Length = 496
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 33 GLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNED--CG 84
G G + + E ++ I F P + W R G P+ ++Y +GN++ CG
Sbjct: 131 GSGTVQEMSEWVEYITFDGESPMANW---RRENGREKPWRIKYWGVGNQNWGCG 181
>pdb|2CMU|A Chain A, Crystal Structure Of A Putative Peptidyl-Arginine
Deiminase
Length = 342
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 30 TDDGLGYFEFLKEALDSIEFARSDPNSTWG 59
T+D +GY E LK L +E A+ D N TW
Sbjct: 57 TNDTIGY-EXLKN-LPGVEIAKVDTNDTWA 84
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 30 TDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGH 67
T D G F+ + +A++++ SD NS W + AA+ H
Sbjct: 239 TIDDSGEFKIIVKAMETLGLKESDQNSIW-RILAAILH 275
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 30 TDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRAAMGH 67
T D G F+ + +A++++ SD NS W + AA+ H
Sbjct: 239 TIDDSGEFKIIVKAMETLGLKESDQNSIW-RILAAILH 275
>pdb|1PZ3|A Chain A, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
pdb|1PZ3|B Chain B, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
Length = 502
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 21/94 (22%)
Query: 9 EASIRPWEDRPGHFGDIWMYWTDDGLGYFEFLK---------------------EALDSI 47
E + P E RP W + +G EF+ A + +
Sbjct: 82 EDGVGPKEQRPRRLDLAWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLV 141
Query: 48 EFARSDPNSTWGSVRAAMGHPDPFDLRYVAIGNE 81
E+ S + +R A G+ +P ++ +GNE
Sbjct: 142 EYCNHPSGSYYSDLRIAHGYKEPHKIKTWCLGNE 175
>pdb|3FKQ|A Chain A, Crystal Structure Of Ntrc-Like Two-Domain Protein
(Rer070207001320) From Eubacterium Rectale At 2.10 A
Resolution
Length = 373
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 30 TDDGLGYFEFLKEALDSIEFARSDPNSTWGSVRA 63
+ +G+ YF K ALD +E + +D ++ G+++
Sbjct: 223 SQEGVSYFSSTKVALDILEISYADIDTLIGNIQG 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,776,540
Number of Sequences: 62578
Number of extensions: 153535
Number of successful extensions: 238
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 20
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)