Query 045216
Match_columns 108
No_of_seqs 116 out of 681
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 10:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3534 AbfA Alpha-L-arabinofu 100.0 3.7E-37 8E-42 259.7 8.8 84 2-85 73-177 (501)
2 PF03662 Glyco_hydro_79n: Glyc 84.9 0.26 5.6E-06 40.8 -0.2 31 66-96 159-197 (319)
3 PF12891 Glyco_hydro_44: Glyco 55.6 15 0.00032 29.5 3.3 30 69-98 122-165 (239)
4 PF02836 Glyco_hydro_2_C: Glyc 33.0 35 0.00075 26.6 2.2 25 73-98 123-147 (298)
5 PF12876 Cellulase-like: Sugar 30.8 22 0.00048 23.1 0.6 10 72-81 10-19 (88)
6 KOG3264 Uncharacterized conser 27.3 40 0.00088 26.8 1.6 22 56-77 67-89 (221)
7 KOG0107 Alternative splicing f 27.3 21 0.00046 28.0 0.1 32 23-54 38-71 (195)
8 KOG4140 Nuclear protein Ataxin 20.7 38 0.00082 30.6 0.4 27 56-82 254-280 (659)
9 KOG1774 Small nuclear ribonucl 19.8 44 0.00096 23.1 0.5 17 25-41 29-51 (88)
10 PRK10150 beta-D-glucuronidase; 18.6 1.3E+02 0.0027 26.3 3.1 31 65-98 404-438 (604)
No 1
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-37 Score=259.66 Aligned_cols=84 Identities=26% Similarity=0.532 Sum_probs=82.0
Q ss_pred CccccccCCCCCCCCCCCCCCCCCcccccCCCCChHHHH---------------------HHHHHHHHHhcCCCCChHHH
Q 045216 2 VKKSISLEASIRPWEDRPGHFGDIWMYWTDDGLGYFEFL---------------------KEALDSIEFARSDPNSTWGS 60 (108)
Q Consensus 2 ~~~~y~W~d~IGp~~~Rp~~~n~~Wg~~~tn~fG~~Efl---------------------qda~d~vEY~ng~~~t~wg~ 60 (108)
|+|.|||+|||||+|+||.++|++|++.|||+|||+||| |+|.+||||||+|.+|+|++
T Consensus 73 Fvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~Gsrgvd~ar~~vEY~n~pggtywsd 152 (501)
T COG3534 73 FVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLGSRGVDEARNWVEYCNHPGGTYWSD 152 (501)
T ss_pred cccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecCCccHHHHHHHHHHccCCCCChhHH
Confidence 899999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHcCCCCCcccceEEeccCCCCh
Q 045216 61 VRAAMGHPDPFDLRYVAIGNEDCGK 85 (108)
Q Consensus 61 ~Ra~~Ghp~P~~vky~eIGNE~~g~ 85 (108)
+|++|||++||+|||||||||+||+
T Consensus 153 lR~~~G~~~P~nvK~w~lGNEm~Gp 177 (501)
T COG3534 153 LRRENGREEPWNVKYWGLGNEMDGP 177 (501)
T ss_pred HHHhcCCCCCcccceEEeccccCCC
Confidence 9999999999999999999999654
No 2
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=84.92 E-value=0.26 Score=40.75 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=13.4
Q ss_pred CCCCCcccceEEeccCCCCh--------hhHHHHHHHHh
Q 045216 66 GHPDPFDLRYVAIGNEDCGK--------KNYSGLHAVLI 96 (108)
Q Consensus 66 Ghp~P~~vky~eIGNE~~g~--------~~Y~~ry~~f~ 96 (108)
-..+.|+|+.||+|||..|. ..|++.|.++.
T Consensus 159 t~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr 197 (319)
T PF03662_consen 159 TASKGYNIDSWELGNELNGSGVGASVSAEQYAKDFIQLR 197 (319)
T ss_dssp EESS-GGG--------HHHHSSSTT--HHHHHHHH---H
T ss_pred HHHcCCCccccccccccCCCCCCCccCHHHHHHHHHHHH
Confidence 45788999999999999863 67776665443
No 3
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=55.64 E-value=15 Score=29.48 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=19.4
Q ss_pred CCcccceEEeccCCCC--------------hhhHHHHHHHHhhh
Q 045216 69 DPFDLRYVAIGNEDCG--------------KKNYSGLHAVLIHF 98 (108)
Q Consensus 69 ~P~~vky~eIGNE~~g--------------~~~Y~~ry~~f~~~ 98 (108)
..=+|+++.|+||... +++...|+.+++++
T Consensus 122 ~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~Aka 165 (239)
T PF12891_consen 122 TNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKA 165 (239)
T ss_dssp STTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHH
T ss_pred cCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHH
Confidence 5667999999999973 25556787777644
No 4
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=33.02 E-value=35 Score=26.61 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=17.9
Q ss_pred cceEEeccCCCChhhHHHHHHHHhhh
Q 045216 73 LRYVAIGNEDCGKKNYSGLHAVLIHF 98 (108)
Q Consensus 73 vky~eIGNE~~g~~~Y~~ry~~f~~~ 98 (108)
|-.|+||||.. ...+.++...++|+
T Consensus 123 Ii~W~~gNE~~-~~~~~~~l~~~~k~ 147 (298)
T PF02836_consen 123 IIMWSLGNESD-YREFLKELYDLVKK 147 (298)
T ss_dssp EEEEEEEESSH-HHHHHHHHHHHHHH
T ss_pred hheeecCccCc-cccchhHHHHHHHh
Confidence 99999999993 33445566666665
No 5
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=30.83 E-value=22 Score=23.15 Aligned_cols=10 Identities=20% Similarity=0.049 Sum_probs=9.0
Q ss_pred ccceEEeccC
Q 045216 72 DLRYVAIGNE 81 (108)
Q Consensus 72 ~vky~eIGNE 81 (108)
.|.+|+|+||
T Consensus 10 ~Il~Wdl~NE 19 (88)
T PF12876_consen 10 RILAWDLWNE 19 (88)
T ss_dssp GEEEEESSTT
T ss_pred CEEEEEeecC
Confidence 4889999999
No 6
>KOG3264 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.34 E-value=40 Score=26.80 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=18.4
Q ss_pred ChHHHHHHHcCCC-CCcccceEE
Q 045216 56 STWGSVRAAMGHP-DPFDLRYVA 77 (108)
Q Consensus 56 t~wg~~Ra~~Ghp-~P~~vky~e 77 (108)
..--++|.+.+++ .||.+||++
T Consensus 67 ~~l~R~~r~ldr~~~~wqlkylG 89 (221)
T KOG3264|consen 67 PSLLRLRRDLDRPEAPWQLKYLG 89 (221)
T ss_pred HHHHHHHHhccCCCCceEEEecC
Confidence 4567788999999 899999975
No 7
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=27.26 E-value=21 Score=27.96 Aligned_cols=32 Identities=19% Similarity=0.562 Sum_probs=27.9
Q ss_pred CCCcccccCCCCChHHHH--HHHHHHHHHhcCCC
Q 045216 23 GDIWMYWTDDGLGYFEFL--KEALDSIEFARSDP 54 (108)
Q Consensus 23 n~~Wg~~~tn~fG~~Efl--qda~d~vEY~ng~~ 54 (108)
..+|-...+-+|-|.||- .||.|.|.||+|..
T Consensus 38 rsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~ 71 (195)
T KOG0107|consen 38 RSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKD 71 (195)
T ss_pred eeEEEeecCCCceEEeccCcccHHHHHhhcCCcc
Confidence 456877788999999998 99999999999975
No 8
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=20.73 E-value=38 Score=30.59 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=22.2
Q ss_pred ChHHHHHHHcCCCCCcccceEEeccCC
Q 045216 56 STWGSVRAAMGHPDPFDLRYVAIGNED 82 (108)
Q Consensus 56 t~wg~~Ra~~Ghp~P~~vky~eIGNE~ 82 (108)
-.||+.||--|+.+||+|-.-.--||.
T Consensus 254 HSMg~KRAV~GRS~PYDVLLA~~~~~~ 280 (659)
T KOG4140|consen 254 HSMGQKRAVKGRSAPYDVLLAPEDNNN 280 (659)
T ss_pred CCcchhcccCCCCCCcccccchhhhhh
Confidence 369999999999999999776555554
No 9
>KOG1774 consensus Small nuclear ribonucleoprotein E [RNA processing and modification]
Probab=19.83 E-value=44 Score=23.12 Aligned_cols=17 Identities=24% Similarity=0.702 Sum_probs=11.7
Q ss_pred CcccccCC------CCChHHHHH
Q 045216 25 IWMYWTDD------GLGYFEFLK 41 (108)
Q Consensus 25 ~Wg~~~tn------~fG~~Eflq 41 (108)
+|-+.+.+ =.|+||||.
T Consensus 29 IWl~eq~~~rieG~IvGFDEyMN 51 (88)
T KOG1774|consen 29 IWLFEQVGLRIEGRIVGFDEYMN 51 (88)
T ss_pred EEEEeccCcEEeEEEechHHhhh
Confidence 57655432 489999993
No 10
>PRK10150 beta-D-glucuronidase; Provisional
Probab=18.59 E-value=1.3e+02 Score=26.26 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=18.7
Q ss_pred cCCCCCcccceEEeccCCCCh----hhHHHHHHHHhhh
Q 045216 65 MGHPDPFDLRYVAIGNEDCGK----KNYSGLHAVLIHF 98 (108)
Q Consensus 65 ~Ghp~P~~vky~eIGNE~~g~----~~Y~~ry~~f~~~ 98 (108)
--||. |-.|+||||..+. ..+.++...++|+
T Consensus 404 ~NHPS---Ii~Ws~gNE~~~~~~~~~~~~~~l~~~~k~ 438 (604)
T PRK10150 404 KNHPS---VVMWSIANEPASREQGAREYFAPLAELTRK 438 (604)
T ss_pred cCCce---EEEEeeccCCCccchhHHHHHHHHHHHHHh
Confidence 44553 7899999998753 2233444444444
Done!