Your job contains 1 sequence.
>045217
MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQK
LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ
LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTD
AGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045217
(224 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2045517 - symbol:AT2G32000 species:3702 "Arabi... 904 1.2e-90 1
MGI|MGI:1333803 - symbol:Top3b "topoisomerase (DNA) III b... 673 3.6e-66 1
ZFIN|ZDB-GENE-070705-37 - symbol:top3b "topoisomerase (DN... 672 4.5e-66 1
UNIPROTKB|H0Y6W0 - symbol:TOP3B "DNA topoisomerase" speci... 671 5.8e-66 1
UNIPROTKB|O95985 - symbol:TOP3B "DNA topoisomerase 3-beta... 671 5.8e-66 1
UNIPROTKB|E2R770 - symbol:TOP3B "DNA topoisomerase" speci... 669 9.4e-66 1
UNIPROTKB|F1RL05 - symbol:TOP3B "DNA topoisomerase" speci... 669 9.4e-66 1
RGD|1309468 - symbol:Top3b "topoisomerase (DNA) III beta"... 669 9.4e-66 1
UNIPROTKB|E1BQG8 - symbol:TOP3B "DNA topoisomerase" speci... 659 1.1e-64 1
UNIPROTKB|Q5ZK71 - symbol:TOP3B "DNA topoisomerase" speci... 659 1.1e-64 1
WB|WBGene00012995 - symbol:Y48C3A.14 species:6239 "Caenor... 571 6.5e-55 1
FB|FBgn0026015 - symbol:Top3beta "Topoisomerase 3beta" sp... 545 5.3e-52 1
UNIPROTKB|E7EWY2 - symbol:TOP3B "DNA topoisomerase" speci... 510 6.7e-49 1
UNIPROTKB|H7C4B0 - symbol:TOP3B "DNA topoisomerase" speci... 415 7.8e-39 1
UNIPROTKB|F1P1F3 - symbol:TOP3A "DNA topoisomerase" speci... 395 1.5e-35 1
WB|WBGene00006596 - symbol:top-3 species:6239 "Caenorhabd... 388 4.0e-35 1
DICTYBASE|DDB_G0275257 - symbol:top3 "DNA topoisomerase I... 389 4.0e-35 1
POMBASE|SPBC16G5.12c - symbol:top3 "DNA topoisomerase III... 377 2.7e-34 1
ZFIN|ZDB-GENE-071212-2 - symbol:top3a "topoisomerase (DNA... 382 3.6e-34 1
GENEDB_PFALCIPARUM|PF13_0251 - symbol:PF13_0251 "DNA topo... 274 1.5e-33 2
UNIPROTKB|Q8IDM7 - symbol:PF13_0251 "DNA topoisomerase II... 274 1.5e-33 2
UNIPROTKB|E2RIS5 - symbol:TOP3A "DNA topoisomerase" speci... 376 1.5e-33 1
MGI|MGI:1197527 - symbol:Top3a "topoisomerase (DNA) III a... 373 3.3e-33 1
ASPGD|ASPL0000072189 - symbol:AN4555 species:162425 "Emer... 365 6.2e-33 1
UNIPROTKB|F1MGY1 - symbol:TOP3A "DNA topoisomerase" speci... 370 6.9e-33 1
UNIPROTKB|B4DK80 - symbol:TOP3A "DNA topoisomerase" speci... 367 1.2e-32 1
UNIPROTKB|Q13472 - symbol:TOP3A "DNA topoisomerase 3-alph... 367 1.4e-32 1
TAIR|locus:2160841 - symbol:TOP3A "topoisomerase 3alpha" ... 358 1.1e-31 1
CGD|CAL0003329 - symbol:orf19.5934 species:5476 "Candida ... 344 1.3e-30 1
FB|FBgn0040268 - symbol:Top3alpha "Topoisomerase 3alpha" ... 333 9.1e-29 1
UNIPROTKB|H7BZN5 - symbol:TOP3A "DNA topoisomerase" speci... 302 7.3e-27 1
SGD|S000004224 - symbol:TOP3 "DNA Topoisomerase III" spec... 285 3.7e-24 1
RGD|1309320 - symbol:Top3a "topoisomerase (DNA) III alpha... 266 8.4e-22 1
UNIPROTKB|K7EMT6 - symbol:TOP3A "DNA topoisomerase 3-alph... 210 4.1e-17 1
TIGR_CMR|BA_1905 - symbol:BA_1905 "DNA topoisomerase III"... 148 5.4e-08 1
TIGR_CMR|BA_0375 - symbol:BA_0375 "DNA topoisomerase III"... 144 1.8e-07 1
TIGR_CMR|SO_2705 - symbol:SO_2705 "DNA topoisomerase I" s... 143 3.2e-07 1
UNIPROTKB|P06612 - symbol:topA species:83333 "Escherichia... 140 7.4e-07 1
UNIPROTKB|Q9KRB2 - symbol:topA "DNA topoisomerase 1" spec... 140 7.5e-07 1
TIGR_CMR|VC_1730 - symbol:VC_1730 "DNA topoisomerase I" s... 140 7.5e-07 1
UNIPROTKB|C9JEI7 - symbol:TOP3B "DNA topoisomerase 3-beta... 131 9.1e-07 1
TIGR_CMR|CHY_1794 - symbol:CHY_1794 "DNA topoisomerase I"... 131 6.9e-06 1
TIGR_CMR|SPO_3079 - symbol:SPO_3079 "DNA topoisomerase I"... 131 9.4e-06 1
TIGR_CMR|CJE_1854 - symbol:CJE_1854 "DNA topoisomerase I"... 126 2.8e-05 1
TIGR_CMR|CPS_1197 - symbol:CPS_1197 "DNA topoisomerase I"... 127 2.9e-05 1
TIGR_CMR|BA_3971 - symbol:BA_3971 "DNA topoisomerase I" s... 124 4.6e-05 1
TIGR_CMR|CBU_2000 - symbol:CBU_2000 "DNA topoisomerase I"... 121 0.00012 1
>TAIR|locus:2045517 [details] [associations]
symbol:AT2G32000 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA;ISS] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 EMBL:CP002685 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 KO:K03165
OMA:QMFLNIT IPI:IPI00534869 RefSeq:NP_180760.2 UniGene:At.38130
PRIDE:F4ISQ7 EnsemblPlants:AT2G32000.1 GeneID:817760
KEGG:ath:AT2G32000 Uniprot:F4ISQ7
Length = 865
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 162/216 (75%), Positives = 189/216 (87%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRY+ I +FKPEKFW L PY+ ++GYEL+LEWER++LFD + AT
Sbjct: 207 VISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYIRKDGYELQLEWERRRLFDLEAAT 266
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+FQKLV++ R +V+D+SEKQE K RP GLNTVNLLKVASSALG+GPQ AM LAERLYTQ
Sbjct: 267 VFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLLKVASSALGFGPQTAMHLAERLYTQ 326
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDF TL A +NPVWG YV+RLL++G+ P+SGTDAGDHPPIT
Sbjct: 327 GFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYVQRLLSDGFHMPKSGTDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PMR+ATE M+G DAWRLY YVCQHFLGTVSP+CKYI
Sbjct: 387 PMRAATEVMVGGDAWRLYQYVCQHFLGTVSPNCKYI 422
>MGI|MGI:1333803 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 UniProt:Q9Z321 Pfam:PF01751 MGI:MGI:1333803
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 PROSITE:PS50880 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
HOGENOM:HOG000184378 HOVERGEN:HBG059857 OMA:GNKERDE
OrthoDB:EOG4ZPDTK EMBL:AB013603 EMBL:BC031723 IPI:IPI00131337
RefSeq:NP_035754.1 UniGene:Mm.326089 ProteinModelPortal:Q9Z321
SMR:Q9Z321 STRING:Q9Z321 PhosphoSite:Q9Z321 PaxDb:Q9Z321
PRIDE:Q9Z321 Ensembl:ENSMUST00000023465 Ensembl:ENSMUST00000119787
GeneID:21976 KEGG:mmu:21976 InParanoid:Q9Z321 ChiTaRS:TOP3B
NextBio:301682 Bgee:Q9Z321 CleanEx:MM_TOP3B Genevestigator:Q9Z321
GermOnline:ENSMUSG00000022779
Length = 862
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 124/217 (57%), Positives = 163/217 (75%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + E L L+W+R ++FD+++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ V S K+++K RP LNTV +L+VASSALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>ZFIN|ZDB-GENE-070705-37 [details] [associations]
symbol:top3b "topoisomerase (DNA) III beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
ZFIN:ZDB-GENE-070705-37 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:BX005237 EMBL:CR933528
IPI:IPI01016652 ProteinModelPortal:F1QNX4
Ensembl:ENSDART00000030553 Bgee:F1QNX4 Uniprot:F1QNX4
Length = 862
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 119/218 (54%), Positives = 161/218 (73%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE--LKLEWERQKLFDFDV 66
++ +GPCQTPTLGFCV+R+ +I SFKPE +W + + G + L L+W+R ++FD D+
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPEAYWVVQAKVANFGKDSPLTLDWDRVRVFDRDI 270
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
MF + + V +++K+++K RP LNTV +L+VASSALG GPQ MQ+AERLY
Sbjct: 271 GQMFVNMAKTAKEARVDSVTKKEKAKQRPLALNTVEMLRVASSALGMGPQHTMQIAERLY 330
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+T YP +FD +GTL AN+ WG+ V+ LL+EG +PR G DAGDHPP
Sbjct: 331 TQGYISYPRTETTHYPENFDLKGTLKQQANSTFWGETVKALLSEGINRPRKGADAGDHPP 390
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITPMR+A+E+ LG D WRLY Y+ +HF+ TVSPDCKY+
Sbjct: 391 ITPMRAASENELGSDGWRLYDYITRHFIATVSPDCKYL 428
>UNIPROTKB|H0Y6W0 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00437 GO:GO:0005694 GO:GO:0006265
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
HGNC:HGNC:11993 ProteinModelPortal:H0Y6W0 Ensembl:ENST00000457270
Uniprot:H0Y6W0
Length = 525
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 123/217 (56%), Positives = 160/217 (73%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 6 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 65
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 66 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 125
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 126 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 185
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 186 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 222
>UNIPROTKB|O95985 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0003916
"DNA topoisomerase activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 EMBL:AF053082 EMBL:D87012 EMBL:AF017146 EMBL:AF125216
EMBL:CR456596 EMBL:BC002432 IPI:IPI00216815 IPI:IPI00216816
IPI:IPI00292671 RefSeq:NP_003926.1 UniGene:Hs.436401
ProteinModelPortal:O95985 SMR:O95985 IntAct:O95985
MINT:MINT-1458306 STRING:O95985 PhosphoSite:O95985 PaxDb:O95985
PRIDE:O95985 DNASU:8940 Ensembl:ENST00000357179
Ensembl:ENST00000398793 GeneID:8940 KEGG:hsa:8940 UCSC:uc002zvs.3
CTD:8940 GeneCards:GC22M022309 HGNC:HGNC:11993 HPA:CAB009198
MIM:603582 neXtProt:NX_O95985 PharmGKB:PA36674 HOGENOM:HOG000184378
HOVERGEN:HBG059857 InParanoid:O95985 OMA:GNKERDE OrthoDB:EOG4ZPDTK
PhylomeDB:O95985 ChEMBL:CHEMBL3127 GenomeRNAi:8940 NextBio:33622
ArrayExpress:O95985 Bgee:O95985 CleanEx:HS_TOP3B
Genevestigator:O95985 GermOnline:ENSG00000100038 Uniprot:O95985
Length = 862
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 123/217 (56%), Positives = 160/217 (73%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>UNIPROTKB|E2R770 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9615 "Canis lupus
familiaris" [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 OMA:GNKERDE EMBL:AAEX03014902 RefSeq:XP_534771.2
Ensembl:ENSCAFT00000024557 GeneID:477576 KEGG:cfa:477576
Uniprot:E2R770
Length = 862
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 123/217 (56%), Positives = 159/217 (73%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG +AWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYL 427
>UNIPROTKB|F1RL05 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9823 "Sus scrofa"
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940 OMA:GNKERDE
EMBL:CU468588 RefSeq:XP_003359220.1 Ensembl:ENSSSCT00000011039
GeneID:100155140 KEGG:ssc:100155140 ArrayExpress:F1RL05
Uniprot:F1RL05
Length = 859
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 123/217 (56%), Positives = 160/217 (73%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDQDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S+K+++K RP LNTV +L+VASSALG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKPEKEAQVEATSKKEKTKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP SFD +G L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKQLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG +AWRLY Y+ +HF+ TVS DC+Y+
Sbjct: 391 TPMRSATEAELGGEAWRLYEYITRHFIATVSHDCRYL 427
>RGD|1309468 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10116
"Rattus norvegicus" [GO:0000793 "condensed chromosome"
evidence=IEA;ISO] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0007059 "chromosome segregation" evidence=IEA;ISO]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 RGD:1309468
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 EMBL:CH473999
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
OrthoDB:EOG4ZPDTK OMA:QMFLNIT IPI:IPI00370440 RefSeq:NP_001099331.1
UniGene:Rn.23773 Ensembl:ENSRNOT00000002524 GeneID:287930
KEGG:rno:287930 NextBio:627240 Uniprot:D4A9Z2
Length = 862
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 124/217 (57%), Positives = 163/217 (75%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + E L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ V S+K+++K RP LNTV +L+VASSALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNMTKLEKEAWVEATSKKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQVAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>UNIPROTKB|E1BQG8 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
OMA:QMFLNIT EMBL:AADN02034767 IPI:IPI00820597
Ensembl:ENSGALT00000040019 ArrayExpress:E1BQG8 Uniprot:E1BQG8
Length = 863
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 119/217 (54%), Positives = 160/217 (73%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + + +V +S+K++ K RP LNTV +L+VAS+ALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNITKMAKEAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L ANNP W + V+ LL+EG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKALLSEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM++ATE LG D+WRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKAATEVELGGDSWRLYEYITRHFIATVSADCKYL 427
>UNIPROTKB|Q5ZK71 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 HOGENOM:HOG000184378 HOVERGEN:HBG059857
OrthoDB:EOG4ZPDTK EMBL:AADN02034767 EMBL:AB215105 EMBL:AJ720213
IPI:IPI00570659 RefSeq:NP_001006181.1 UniGene:Gga.16362
STRING:Q5ZK71 Ensembl:ENSGALT00000002250 GeneID:416771
KEGG:gga:416771 NextBio:20820183 Uniprot:Q5ZK71
Length = 862
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 119/217 (54%), Positives = 160/217 (73%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + + +V +S+K++ K RP LNTV +L+VAS+ALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNITKMAKEAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L ANNP W + V+ LL+EG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKALLSEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM++ATE LG D+WRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKAATEVELGGDSWRLYEYITRHFIATVSADCKYL 427
>WB|WBGene00012995 [details] [associations]
symbol:Y48C3A.14 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] [GO:0003916 "DNA topoisomerase
activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:AL117203 GeneID:174978
KEGG:cel:CELE_Y48C3A.14 CTD:174978 RefSeq:NP_001254381.1
ProteinModelPortal:H1UBJ9 SMR:H1UBJ9 EnsemblMetazoa:Y48C3A.14a
WormBase:Y48C3A.14a OMA:QMFLNIT Uniprot:H1UBJ9
Length = 869
Score = 571 (206.1 bits), Expect = 6.5e-55, P = 6.5e-55
Identities = 108/217 (49%), Positives = 143/217 (65%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV--QNGYELKLEWERQKLFDFDV 66
++ YGPCQTPTLGFCV R+ QI FKPE++W L +G EW+R ++FD +V
Sbjct: 212 VISYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNFTTSDDGQIFSPEWQRGRIFDAEV 271
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A +F + + V+D+S+K+ K RPC LNTV L++VASS+LG P M +AE LY
Sbjct: 272 ARVFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAEALY 331
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+TAY ++FD GTL LA + WG V ++LA+G +P+SG D GDHPP
Sbjct: 332 TQGYISYPRTETTAYSANFDLTGTLKILAGDRKWGSVVSQVLADGIKRPKSGVDKGDHPP 391
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
ITPMR + G D R+Y YV QHF+ T+ C Y
Sbjct: 392 ITPMRPNHGGLSG-DMSRIYEYVSQHFVATLMKQCVY 427
>FB|FBgn0026015 [details] [associations]
symbol:Top3beta "Topoisomerase 3beta" species:7227
"Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS;NAS] [GO:0003916 "DNA topoisomerase
activity" evidence=IDA;NAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=IDA] [GO:0000737 "DNA catabolic process,
endonucleolytic" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE014298 GO:GO:0004520
GO:GO:0000737 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
EMBL:AF099909 EMBL:BT016116 RefSeq:NP_511059.2 UniGene:Dm.2946
ProteinModelPortal:O96651 DIP:DIP-22155N STRING:O96651 PaxDb:O96651
PRIDE:O96651 EnsemblMetazoa:FBtr0070930 GeneID:31565
KEGG:dme:Dmel_CG3458 CTD:31565 FlyBase:FBgn0026015
InParanoid:O96651 OMA:PPFVQGT OrthoDB:EOG4QRFJZ PhylomeDB:O96651
GenomeRNAi:31565 NextBio:774220 Bgee:O96651 GermOnline:CG3458
Uniprot:O96651
Length = 875
Score = 545 (196.9 bits), Expect = 5.3e-52, P = 5.3e-52
Identities = 102/215 (47%), Positives = 138/215 (64%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW H L+ E+ LEW R ++F D+A
Sbjct: 210 LISYGPCQTPTLGFCVKRHDDIQTFKPESFW--HLQLLAGQPEVTLEWARGRVFKKDIAI 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V ++ K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 268 MLLNRVKEHKKATVESVASKEAYKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP++FD L L + +G+ +L + PR G DAGDHPPIT
Sbjct: 328 GYISYPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ +D WR+Y ++C+HF+GTVS D KY
Sbjct: 387 PMKLGNRSDFDRDTWRVYEFICRHFMGTVSRDLKY 421
>UNIPROTKB|E7EWY2 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 PROSITE:PS00396
SMART:SM00437 GO:GO:0005694 GO:GO:0006265 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 Gene3D:1.10.290.10 EMBL:D87012 HGNC:HGNC:11993
IPI:IPI00908525 ProteinModelPortal:E7EWY2 SMR:E7EWY2
Ensembl:ENST00000413067 ArrayExpress:E7EWY2 Bgee:E7EWY2
Uniprot:E7EWY2
Length = 282
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 95/156 (60%), Positives = 118/156 (75%)
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYTQ
Sbjct: 1 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 60
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPIT
Sbjct: 61 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 120
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 121 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 156
>UNIPROTKB|H7C4B0 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR013497 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PROSITE:PS00396 GO:GO:0005694 GO:GO:0006265
GO:GO:0003917 InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
Gene3D:1.10.290.10 EMBL:D87012 HGNC:HGNC:11993
ProteinModelPortal:H7C4B0 Ensembl:ENST00000436282 Bgee:H7C4B0
Uniprot:H7C4B0
Length = 168
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 80/134 (59%), Positives = 100/134 (74%)
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+A MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERL
Sbjct: 1 IAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERL 60
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
YTQG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHP
Sbjct: 61 YTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHP 120
Query: 186 PITPMRSATEDMLG 199
PITPM+SATE LG
Sbjct: 121 PITPMKSATEAELG 134
>UNIPROTKB|F1P1F3 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
Gene3D:1.10.290.10 OMA:KPRKCSL EMBL:AADN02023704 IPI:IPI00571604
Ensembl:ENSGALT00000008050 Uniprot:F1P1F3
Length = 1020
Score = 395 (144.1 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 79/215 (36%), Positives = 122/215 (56%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F+ + + W+R +LF+
Sbjct: 240 LISYGSCQFPTLGFVVERFKAIQAFVPEAFYKIKVTHDHEDGNVVFNWKRNRLFNHTACL 299
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + M+D + V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 300 VLYHMCMEDPVATVVEVGSKPKSKWRPLPLDTVELEKLASRKLKINAKETMRIAEKLYTQ 359
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P + + +P WG + +R+L +G PR+GT + HPPI
Sbjct: 360 GFISYPRTETNIFPKELNLSALVQHQTQDPNWGAFAQRILDQGGPTPRNGTKSDQAHPPI 419
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + T ++ G + RLY ++ +HFL S D K
Sbjct: 420 HPTKY-TANLQGNEQ-RLYEFIVRHFLACCSQDAK 452
>WB|WBGene00006596 [details] [associations]
symbol:top-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007126 "meiosis" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007126 GO:GO:0005694 GO:GO:0008270
GO:GO:0007276 EMBL:AL132860 GO:GO:0006265 PROSITE:PS50880
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 EMBL:AF057032 PIR:T43031 RefSeq:NP_499558.1
UniGene:Cel.19512 ProteinModelPortal:O61660 SMR:O61660
STRING:O61660 PaxDb:O61660 EnsemblMetazoa:Y56A3A.27.1
EnsemblMetazoa:Y56A3A.27.2 GeneID:176631 KEGG:cel:CELE_Y56A3A.27
UCSC:Y56A3A.27.1 CTD:176631 WormBase:Y56A3A.27 InParanoid:O61660
OMA:IGLMDAN NextBio:893376 Uniprot:O61660
Length = 759
Score = 388 (141.6 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 76/215 (35%), Positives = 119/215 (55%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF RY I +F E FW L + ++++ W+R +LFD D
Sbjct: 210 VISYGSCQFPTLGFVTDRYKMIENFVSEPFWKLIVEHTRESHKVEFLWDRNRLFDRDTVD 269
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + V +++K +SK RP L+TV L K+ S L + MQ+AE+LY++
Sbjct: 270 ILHDECKETKEAHVEKVAKKPKSKWRPQALDTVELEKLGISKLRMSAKQTMQVAEKLYSK 329
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P+ + + + +WGD+ +L G PR+G + + HPPI
Sbjct: 330 GFISYPRTETNKFPAGLNLTPLVQQQTQSNIWGDFANEVLQNG-VNPRNGRKSDEAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ + L D W++Y V +HFL VS D +
Sbjct: 389 HPLKFTEKHQLQGDDWKVYELVVRHFLACVSQDAQ 423
>DICTYBASE|DDB_G0275257 [details] [associations]
symbol:top3 "DNA topoisomerase III" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 dictyBase:DDB_G0275257
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GenomeReviews:CM000151_GR EMBL:AAFI02000013 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 Gene3D:1.10.290.10 RefSeq:XP_643754.2 HSSP:O29238
ProteinModelPortal:Q8T2T7 STRING:Q8T2T7 EnsemblProtists:DDB0234226
GeneID:8619798 KEGG:ddi:DDB_G0275257 OMA:IKRLWIN Uniprot:Q8T2T7
Length = 828
Score = 389 (142.0 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 85/220 (38%), Positives = 123/220 (55%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL---HPYL-VQNGYELKL--EWERQKLF 62
I+ YGPCQ PTLGF V+RY +I +FKPE FW L H + +G + + W R +LF
Sbjct: 232 IISYGPCQFPTLGFVVERYFRIVNFKPEDFWHLSVVHEKMDTSSGKMIPVTFSWCRNRLF 291
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D+ A + + + + V+D++ K ES+ RP L T+ L K AS L MQ A
Sbjct: 292 DYTAAFILYEKCLDNTEATVVDVTSK-ESRYRPVPLTTIELQKAASKKLRISSVQTMQYA 350
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSG-TD 180
E LYT+G ISYPRTE+ ++ + D +G + A+NP WG Y RL+ + P+SG +
Sbjct: 351 EELYTKGLISYPRTETDSFQAGTDLKGLIGNQASNPEWGAYASRLINNNQFVYPKSGKNN 410
Query: 181 AGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P SAT L + ++Y ++ + FL S +
Sbjct: 411 DNSHPPIHPTSSATG--LSGNLKKIYDFITRRFLACCSEE 448
>POMBASE|SPBC16G5.12c [details] [associations]
symbol:top3 "DNA topoisomerase III" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0000280 "nuclear division"
evidence=IMP] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=TAS] [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006259
"DNA metabolic process" evidence=IGI] [GO:0006261 "DNA-dependent
DNA replication" evidence=IMP] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0031297 "replication fork processing" evidence=NAS] [GO:0031422
"RecQ helicase-Topo III complex" evidence=TAS] [GO:0043007
"maintenance of rDNA" evidence=IMP] [GO:0045910 "negative
regulation of DNA recombination" evidence=TAS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 PomBase:SPBC16G5.12c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0000070 GO:GO:0045910 GO:GO:0031297
GO:GO:0000712 GO:GO:0007000 GO:GO:0043007 GO:GO:0006265
PROSITE:PS50880 GO:GO:0031422 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 OMA:IGLMDAN EMBL:AF126287 PIR:T39604
RefSeq:NP_596761.1 ProteinModelPortal:O60126 STRING:O60126
EnsemblFungi:SPBC16G5.12c.1 GeneID:2539881 KEGG:spo:SPBC16G5.12c
OrthoDB:EOG4KWP2D NextBio:20801026 Uniprot:O60126
Length = 622
Score = 377 (137.8 bits), Expect = 2.7e-34, P = 2.7e-34
Identities = 76/216 (35%), Positives = 117/216 (54%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YGPCQ PTLGF V R+ ++ F PE +W L + G ++ WER K+FD
Sbjct: 206 IISYGPCQFPTLGFVVDRWQRVEDFVPETYWHLRFVDKRQGKTIQFNWERAKVFDRLTTM 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + ++ + +V++I++K ++K +P L+TV L K+ L + ++LAE LYT
Sbjct: 266 IILENCLECKTAKVVNITQKPKTKYKPLPLSTVELTKLGPKHLRISAKKTLELAENLYTN 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPI 187
GF+SYPRTE+ + SS + + L W Y E LLA Y PR G + HPPI
Sbjct: 326 GFVSYPRTETDQFDSSMNLHAIIQKLTGAQEWDSYAEGLLAGDYRPPRKGKHNDRAHPPI 385
Query: 188 TPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCK 222
P++ L +D W++Y + + FL S + K
Sbjct: 386 HPVQMVHRSALPSQDHWKVYELITRRFLACCSDNAK 421
>ZFIN|ZDB-GENE-071212-2 [details] [associations]
symbol:top3a "topoisomerase (DNA) III alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
ZFIN:ZDB-GENE-071212-2 GO:GO:0005694 GO:GO:0008270 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
Gene3D:1.10.290.10 EMBL:BX649547 EMBL:BX649440 IPI:IPI00489703
ProteinModelPortal:F1R242 Ensembl:ENSDART00000102492 Bgee:F1R242
Uniprot:F1R242
Length = 1009
Score = 382 (139.5 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 78/216 (36%), Positives = 125/216 (57%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ YG CQ PTLGF V+R+ I +F PE F+ + N E ++ W+R +LF+
Sbjct: 235 LISYGSCQFPTLGFVVERFKAIQAFIPETFFKIKVVHEPNEEESVEFNWKRHRLFNHTAC 294
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ ++ M++ + +VI ++ K +SK RP L+TV L K+AS L + M++AE+LYT
Sbjct: 295 LVLYQMCMEEPMAKVISVTSKPKSKWRPLPLDTVELEKLASRKLRISAKETMKIAEKLYT 354
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
QGFISYPRTE+ +P + + + + WG++ +R+L G PR+G + HPP
Sbjct: 355 QGFISYPRTETNMFPQNLNLTRLVEQQTQDQEWGNFAQRILESGGPTPRNGNKSDQAHPP 414
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P + T + G + RLY ++ +HFL S D +
Sbjct: 415 IHPTKY-TNGLQGNEK-RLYEFIVRHFLACCSKDAQ 448
>GENEDB_PFALCIPARUM|PF13_0251 [details] [associations]
symbol:PF13_0251 "DNA topoisomerase III,
putative" species:5833 "Plasmodium falciparum" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
Uniprot:Q8IDM7
Length = 710
Score = 274 (101.5 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 54/168 (32%), Positives = 94/168 (55%)
Query: 56 WERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGP 115
W R +LFD + + ++++ + ++ ++ E + K +P LNT+ + K+ S
Sbjct: 344 WSRIRLFDHLAVILIYEELLKNPLCKITNVYESETRKYKPYPLNTLQMTKLVSIYFKISS 403
Query: 116 QMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAK 174
+ M LAE+LY +G+ISYPRTE+ +P S + ++ L N +G Y +L E Y K
Sbjct: 404 KECMMLAEKLYNKGYISYPRTETNYFPDSMNLHKIINELRKNDNFGWYANKLCEEHKYQK 463
Query: 175 PRSGT-DAGDHPPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVSPD 220
PR G + HPPI P+++ + + + + W+LY ++C+HFL S D
Sbjct: 464 PRKGKMNDKAHPPIHPVKNMNKSLKVEEKEWKLYEFICKHFLAVCSND 511
Score = 126 (49.4 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYEL 52
T I+ YGPCQ PTLGF V RYL I +FK E +W++ V N E+
Sbjct: 204 TSIISYGPCQFPTLGFVVNRYLDIKNFKNEYYWSIKMKYVYNNDEI 249
>UNIPROTKB|Q8IDM7 [details] [associations]
symbol:PF13_0251 "DNA topoisomerase III, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
Uniprot:Q8IDM7
Length = 710
Score = 274 (101.5 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 54/168 (32%), Positives = 94/168 (55%)
Query: 56 WERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGP 115
W R +LFD + + ++++ + ++ ++ E + K +P LNT+ + K+ S
Sbjct: 344 WSRIRLFDHLAVILIYEELLKNPLCKITNVYESETRKYKPYPLNTLQMTKLVSIYFKISS 403
Query: 116 QMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAK 174
+ M LAE+LY +G+ISYPRTE+ +P S + ++ L N +G Y +L E Y K
Sbjct: 404 KECMMLAEKLYNKGYISYPRTETNYFPDSMNLHKIINELRKNDNFGWYANKLCEEHKYQK 463
Query: 175 PRSGT-DAGDHPPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVSPD 220
PR G + HPPI P+++ + + + + W+LY ++C+HFL S D
Sbjct: 464 PRKGKMNDKAHPPIHPVKNMNKSLKVEEKEWKLYEFICKHFLAVCSND 511
Score = 126 (49.4 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYEL 52
T I+ YGPCQ PTLGF V RYL I +FK E +W++ V N E+
Sbjct: 204 TSIISYGPCQFPTLGFVVNRYLDIKNFKNEYYWSIKMKYVYNNDEI 249
>UNIPROTKB|E2RIS5 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9615 "Canis lupus
familiaris" [GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 KO:K03165 CTD:7156 OMA:KPRKCSL
EMBL:AAEX03003715 RefSeq:XP_546656.2 Ensembl:ENSCAFT00000029019
GeneID:489537 KEGG:cfa:489537 NextBio:20862709 Uniprot:E2RIS5
Length = 989
Score = 376 (137.4 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 80/218 (36%), Positives = 122/218 (55%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEWERQKLFDFD 65
++ YG CQ PTLGF V+R+ I +F PE F H V + ++ ++ W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEIF---HKIKVTHDHKDGIVEFNWKRHRLFNHT 294
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ +L M+D V+++ K +SK RP L+TV L K+AS L + M++AE+L
Sbjct: 295 ACLVLYQLCMEDPTATVVEVRSKSKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKL 354
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-H 184
YTQG+ISYPRTE+ +P D + +P WG + + +L G PR+G + H
Sbjct: 355 YTQGYISYPRTETNIFPKDLDLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQAH 414
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PPI P + T + G D RLY ++ +HFL S D +
Sbjct: 415 PPIHPTKY-TSSLQG-DEQRLYEFIVRHFLACCSQDAQ 450
>MGI|MGI:1197527 [details] [associations]
symbol:Top3a "topoisomerase (DNA) III alpha" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016605 "PML body" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 MGI:MGI:1197527
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
GO:GO:0046872 GO:GO:0016605 GO:GO:0008270 Reactome:REACT_120463
Reactome:REACT_27235 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 CTD:7156 HOGENOM:HOG000184377 HOVERGEN:HBG056668
OMA:KPRKCSL EMBL:AB006074 IPI:IPI00115672 PIR:T13951
RefSeq:NP_033436.1 UniGene:Mm.477819 ProteinModelPortal:O70157
SMR:O70157 IntAct:O70157 STRING:O70157 PhosphoSite:O70157
PRIDE:O70157 Ensembl:ENSMUST00000002891 GeneID:21975 KEGG:mmu:21975
InParanoid:O70157 NextBio:301678 Bgee:O70157 CleanEx:MM_TOP3A
Genevestigator:O70157 GermOnline:ENSMUSG00000002814 Uniprot:O70157
Length = 1003
Score = 373 (136.4 bits), Expect = 3.3e-33, P = 3.3e-33
Identities = 79/218 (36%), Positives = 124/218 (56%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEWERQKLFDFD 65
++ YG CQ PTLGF V+R+ I +F PE F H V + ++ ++ W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEVF---HKIKVTHDHKDGTVEFNWKRYRLFNHT 294
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ +L M+D + V+++ K +SK RP L+TV L K+AS L + M++AE+L
Sbjct: 295 ACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKL 354
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-H 184
YTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G+ + H
Sbjct: 355 YTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRNGSKSDQAH 414
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PPI P + T + G D RLY ++ +HFL S D +
Sbjct: 415 PPIHPTKY-TSGLQGDDR-RLYEFIVRHFLACCSQDAQ 450
>ASPGD|ASPL0000072189 [details] [associations]
symbol:AN4555 species:162425 "Emericella nidulans"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0043007 "maintenance of rDNA"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
EMBL:BN001303 EMBL:AACD01000078 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:IGLMDAN
OrthoDB:EOG4KWP2D RefSeq:XP_662159.1 ProteinModelPortal:Q5B4H5
STRING:Q5B4H5 EnsemblFungi:CADANIAT00005883 GeneID:2872352
KEGG:ani:AN4555.2 Uniprot:Q5B4H5
Length = 629
Score = 365 (133.5 bits), Expect = 6.2e-33, P = 6.2e-33
Identities = 78/216 (36%), Positives = 114/216 (52%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RYL++ FKPE FW + ++G ++ W R LFD T
Sbjct: 210 VISYGSCQFPTLGFVVDRYLRVKRFKPETFWGIKVMHTRDGIKVSFLWNRVHLFDRAAVT 269
Query: 69 -MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
M ++ +M + EV +++K SK RP L TV+L + + L M++AE LYT
Sbjct: 270 IMLERCLMATKA-EVTKVNQKPTSKWRPLPLTTVDLQMMGTKYLRMDSAKVMKIAENLYT 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
+GFISYPRTE+ + D + + + WG+Y LL + PR+G HPP
Sbjct: 329 KGFISYPRTETDQFDKGIDLKKLIEKQLPDERWGEYARCLLGGNFRTPRAGRHNDQAHPP 388
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ L +D ++Y +V + FL S D K
Sbjct: 389 IHPVCWVNPTTLTEDERKVYEFVTRRFLACCSDDAK 424
>UNIPROTKB|F1MGY1 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9913 "Bos taurus"
[GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] InterPro:IPR000380
InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 GO:GO:0016605
GO:GO:0008270 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
OMA:KPRKCSL EMBL:DAAA02048987 EMBL:DAAA02048988 IPI:IPI00827029
UniGene:Bt.103042 Ensembl:ENSBTAT00000022721 Uniprot:F1MGY1
Length = 1002
Score = 370 (135.3 bits), Expect = 6.9e-33, P = 6.9e-33
Identities = 77/215 (35%), Positives = 117/215 (54%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F + ++ W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIRVTHDHRDGVVEFSWKRHRLFNHTACL 297
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ ++ M+D V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 298 VLYQMCMEDPRAMVVEVRSKAKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQ 357
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P D + +P WG + +L G PR+G + HPPI
Sbjct: 358 GYISYPRTETNIFPKDLDLAALVEQQTPDPRWGAFARNILERGGPTPRNGNKSDQAHPPI 417
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + T+ + G D RLY + +HFL S D +
Sbjct: 418 HPTKY-TDSLQG-DEQRLYELIVRHFLACCSQDAQ 450
>UNIPROTKB|B4DK80 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 EMBL:AC127537
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
UniGene:Hs.592115 HGNC:HGNC:11992 HOVERGEN:HBG056668 EMBL:AK296437
IPI:IPI01011812 SMR:B4DK80 STRING:B4DK80 Ensembl:ENST00000542570
UCSC:uc010vxs.1 Uniprot:B4DK80
Length = 906
Score = 367 (134.2 bits), Expect = 1.2e-32, P = 1.2e-32
Identities = 78/218 (35%), Positives = 124/218 (56%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEWERQKLFDFD 65
++ YG CQ PTLGF V+R+ I +F PE F H V + ++ ++ W+R +LF+
Sbjct: 143 LISYGSCQFPTLGFVVERFKAIQAFVPEIF---HRIKVTHDHKDGIVEFNWKRHRLFNHT 199
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ +L ++D + V+++ K +SK RP L+TV L K+AS L + M++AE+L
Sbjct: 200 ACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKL 259
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-H 184
YTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G + H
Sbjct: 260 YTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQAH 319
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PPI P + T ++ G D RLY ++ +HFL S D +
Sbjct: 320 PPIHPTKY-TNNLQG-DEQRLYEFIVRHFLACCSQDAQ 355
>UNIPROTKB|Q13472 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016605 "PML body"
evidence=IDA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0007126 "meiosis" evidence=TAS]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007126 GO:GO:0005694 GO:GO:0046872 GO:GO:0016605
GO:GO:0008270 Reactome:REACT_111183 EMBL:CH471196 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 EMBL:U43431 EMBL:HQ205026
EMBL:HQ205027 EMBL:HQ205028 EMBL:HQ205029 EMBL:HQ205030
EMBL:HQ205031 EMBL:HQ205032 EMBL:HQ205033 EMBL:HQ205034
EMBL:HQ205035 EMBL:HQ205036 EMBL:HQ205037 EMBL:HQ205038
EMBL:HQ205039 EMBL:HQ205040 EMBL:HQ205041 EMBL:HQ205042
EMBL:HQ205043 EMBL:HQ205044 EMBL:HQ205045 EMBL:HQ205046
EMBL:HQ205047 EMBL:HQ205048 EMBL:HQ205049 EMBL:HQ205050
EMBL:HQ205051 EMBL:HQ205052 EMBL:HQ205053 EMBL:HQ205054
EMBL:HQ205055 EMBL:HQ205056 EMBL:HQ205057 EMBL:HQ205058
EMBL:HQ205059 EMBL:HQ205060 EMBL:HQ205061 EMBL:HQ205062
EMBL:HQ205063 EMBL:HQ205064 EMBL:HQ205065 EMBL:AK292926
EMBL:BC051748 IPI:IPI00013378 IPI:IPI00221295 RefSeq:NP_004609.1
UniGene:Hs.592115 ProteinModelPortal:Q13472 SMR:Q13472
DIP:DIP-33323N IntAct:Q13472 MINT:MINT-6610291 STRING:Q13472
PhosphoSite:Q13472 DMDM:2501242 PaxDb:Q13472 PRIDE:Q13472
Ensembl:ENST00000321105 Ensembl:ENST00000580095 GeneID:7156
KEGG:hsa:7156 UCSC:uc002gsx.1 CTD:7156 GeneCards:GC17M018175
HGNC:HGNC:11992 HPA:CAB002449 MIM:601243 neXtProt:NX_Q13472
PharmGKB:PA36673 HOGENOM:HOG000184377 HOVERGEN:HBG056668
InParanoid:Q13472 OMA:KPRKCSL OrthoDB:EOG4K6G3F PhylomeDB:Q13472
GenomeRNAi:7156 NextBio:28002 ArrayExpress:Q13472 Bgee:Q13472
CleanEx:HS_TOP3A Genevestigator:Q13472 GermOnline:ENSG00000177302
Uniprot:Q13472
Length = 1001
Score = 367 (134.2 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 78/218 (35%), Positives = 124/218 (56%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEWERQKLFDFD 65
++ YG CQ PTLGF V+R+ I +F PE F H V + ++ ++ W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEIF---HRIKVTHDHKDGIVEFNWKRHRLFNHT 294
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ +L ++D + V+++ K +SK RP L+TV L K+AS L + M++AE+L
Sbjct: 295 ACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKL 354
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-H 184
YTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G + H
Sbjct: 355 YTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQAH 414
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PPI P + T ++ G D RLY ++ +HFL S D +
Sbjct: 415 PPIHPTKY-TNNLQG-DEQRLYEFIVRHFLACCSQDAQ 450
>TAIR|locus:2160841 [details] [associations]
symbol:TOP3A "topoisomerase 3alpha" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA;ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0007067
"mitosis" evidence=IMP] [GO:0007126 "meiosis" evidence=IMP]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 PROSITE:PS50158 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007067
GO:GO:0008270 GO:GO:0006281 GO:GO:0000712 EMBL:AB019227
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:KPRKCSL
HSSP:P14294 EMBL:EU295446 IPI:IPI00517152 RefSeq:NP_201197.1
UniGene:At.28974 ProteinModelPortal:Q9LVP1 SMR:Q9LVP1 PaxDb:Q9LVP1
PRIDE:Q9LVP1 EnsemblPlants:AT5G63920.1 GeneID:836513
KEGG:ath:AT5G63920 TAIR:At5g63920 InParanoid:Q9LVP1
PhylomeDB:Q9LVP1 ProtClustDB:CLSN2686218 Genevestigator:Q9LVP1
Uniprot:Q9LVP1
Length = 926
Score = 358 (131.1 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 80/217 (36%), Positives = 120/217 (55%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKLEWERQKLFDFDVA 67
++ YGPCQ PTLGF V+RY +I + +PE+FWT++ + + G W R LFD+ A
Sbjct: 217 VISYGPCQFPTLGFIVERYWEIQAHEPEEFWTINCSHQSEEGLAT-FNWMRGHLFDYASA 275
Query: 68 TMFQKLVMQDRILEVIDISEKQES-KVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ ++ +++ V+++ +E K P LNT+ L K AS + M++AE LY
Sbjct: 276 VILYEMCVEEPTATVMNVPHPRERFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELY 335
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA-EG--YAKPRSGT-DAG 182
GFISYPRTE+ ++ S D R + +P WG Y +RLL EG + P +G D
Sbjct: 336 QAGFISYPRTETDSFSSRTDLRAMVEEQTRHPAWGSYAQRLLEPEGGLWRNPANGGHDDK 395
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + S+ E +D +Y V +H+L VS
Sbjct: 396 AHPPIHPTKFSSGESNWSRDHLNVYELVVRHYLACVS 432
>CGD|CAL0003329 [details] [associations]
symbol:orf19.5934 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0031422 "RecQ helicase-Topo III
complex" evidence=IEA] [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0043007 "maintenance of rDNA"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0007004 "telomere maintenance via telomerase" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
CGD:CAL0003329 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
EMBL:AACQ01000003 EMBL:AACQ01000004 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 RefSeq:XP_722999.1 RefSeq:XP_723146.1
STRING:Q5ANG9 GeneID:3635251 GeneID:3635329 KEGG:cal:CaO19.13355
KEGG:cal:CaO19.5934 Uniprot:Q5ANG9
Length = 629
Score = 344 (126.2 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 75/212 (35%), Positives = 105/212 (49%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVATMF 70
YG CQ PTLGF V RY ++ SF PE FW + + + W R FD V ++
Sbjct: 209 YGTCQFPTLGFVVDRYKRVKSFTPEPFWYIEIETRKENKKTIFNWVRGHFFDKMYVVMLY 268
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ + I K++ RP L TV L K + + A+ AERLY G+
Sbjct: 269 DRCCKSGEFGTISKIESKRKPNFRPFPLTTVELQKDCARFFKMSAKTALAAAERLYNLGY 328
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITP 189
+SYPRTE+ + DF+ L +P WG Y +LL EG+ PRSG+ D HPPI P
Sbjct: 329 LSYPRTETDRFAKETDFKSLLEVHKQDPRWGSYTTKLLNEGFETPRSGSHDDKAHPPIHP 388
Query: 190 MRSATEDMLGK-DAWRLYSYVCQHFLGTVSPD 220
++ + D L D ++Y YV + F+ S D
Sbjct: 389 IKYVSLDTLNTLDEKKVYEYVVRRFIACCSKD 420
>FB|FBgn0040268 [details] [associations]
symbol:Top3alpha "Topoisomerase 3alpha" species:7227
"Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS;NAS] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042246 "tissue regeneration" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] InterPro:IPR000380
InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 EMBL:AE014134 GO:GO:0008270
GO:GO:0000002 GO:GO:0042246 GO:GO:0000724 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003916 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 EMBL:AF255733 EMBL:BT015282 RefSeq:NP_523602.2
UniGene:Dm.2659 ProteinModelPortal:Q9NG98 SMR:Q9NG98 STRING:Q9NG98
PaxDb:Q9NG98 PRIDE:Q9NG98 EnsemblMetazoa:FBtr0081246 GeneID:35236
KEGG:dme:Dmel_CG10123 CTD:35236 FlyBase:FBgn0040268 eggNOG:COG0550
GeneTree:ENSGT00530000063430 InParanoid:Q9NG98 KO:K03165
OMA:LVIHERN OrthoDB:EOG43TX9H PhylomeDB:Q9NG98 GenomeRNAi:35236
NextBio:792526 Bgee:Q9NG98 GermOnline:CG10123 Gene3D:1.10.290.10
Uniprot:Q9NG98
Length = 1250
Score = 333 (122.3 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 76/216 (35%), Positives = 116/216 (53%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF +RY +I +F E FW + + ++ W R +LFD +
Sbjct: 230 LISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACE 289
Query: 69 MFQKLVMQD---RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ L + + R L V ++ K + K RP L+TV + K+ S L + M +AE+L
Sbjct: 290 NYLLLCLAEPDPRAL-VESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKL 348
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-H 184
YT+GFISYPRTE+ + F + + WG + +R++ G PR+G + H
Sbjct: 349 YTKGFISYPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKSDQAH 407
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
PPI P + A E++ G +A R+Y V +HFL VS D
Sbjct: 408 PPIHPTKLA-ENLQGNEA-RVYELVVRHFLACVSKD 441
>UNIPROTKB|H7BZN5 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0006265 EMBL:AC127537 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 HGNC:HGNC:11992 ProteinModelPortal:H7BZN5
Ensembl:ENST00000412083 Uniprot:H7BZN5
Length = 384
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 62/173 (35%), Positives = 100/173 (57%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEWERQKLFDFD 65
++ YG CQ PTLGF V+R+ I +F PE F H V + ++ ++ W+R +LF+
Sbjct: 213 LISYGSCQFPTLGFVVERFKAIQAFVPEIF---HRIKVTHDHKDGIVEFNWKRHRLFNHT 269
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ +L ++D + V+++ K +SK RP L+TV L K+AS L + M++AE+L
Sbjct: 270 ACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKL 329
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG 178
YTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 330 YTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNG 382
>SGD|S000004224 [details] [associations]
symbol:TOP3 "DNA Topoisomerase III" species:4932
"Saccharomyces cerevisiae" [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0031422
"RecQ helicase-Topo III complex" evidence=IDA;IPI] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0007004 "telomere maintenance
via telomerase" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IDA]
[GO:0000018 "regulation of DNA recombination" evidence=IMP]
[GO:0007064 "mitotic sister chromatid cohesion" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 SGD:S000004224 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 EMBL:BK006945
EMBL:U19027 GO:GO:0007131 GO:GO:0007004 GO:GO:0007064 GO:GO:0000018
GO:GO:0006265 PROSITE:PS50880 GO:GO:0031422 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 OrthoDB:EOG4KWP2D EMBL:M24939 PIR:A33169
RefSeq:NP_013335.1 ProteinModelPortal:P13099 DIP:DIP-2912N
IntAct:P13099 MINT:MINT-442624 STRING:P13099 PaxDb:P13099
PeptideAtlas:P13099 EnsemblFungi:YLR234W GeneID:850935
KEGG:sce:YLR234W CYGD:YLR234w OMA:CCSEDAK NextBio:967378
Genevestigator:P13099 GermOnline:YLR234W Uniprot:P13099
Length = 656
Score = 285 (105.4 bits), Expect = 3.7e-24, P = 3.7e-24
Identities = 70/204 (34%), Positives = 102/204 (50%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELKLEWERQKLFD-FD 65
++ YG CQ PTLGF V R+ +I +F PE+FW + + NG +W+R LFD
Sbjct: 228 VVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLS 287
Query: 66 VATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V T ++ + + +V+D+ K +K RP L TV L K + L + ++ AE+
Sbjct: 288 VLTFYETCIETAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEK 347
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLS--------ALANNPVWGDYVERLLA-EGYAK- 174
LY +GFISYPRTE+ +P + D + + A W Y LL E +
Sbjct: 348 LYQKGFISYPRTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNN 407
Query: 175 -----PRSGT-DAGDHPPITPMRS 192
PRSG+ D HPPI P+ S
Sbjct: 408 NKFKFPRSGSHDDKAHPPIHPIVS 431
>RGD|1309320 [details] [associations]
symbol:Top3a "topoisomerase (DNA) III alpha" species:10116
"Rattus norvegicus" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA;ISO] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016605 "PML body"
evidence=ISO] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417 SMART:SM00436
SMART:SM00437 Pfam:PF01751 RGD:1309320 InterPro:IPR006171
GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 IPI:IPI00951502
Ensembl:ENSRNOT00000068351 UCSC:RGD:1309320 ArrayExpress:D4A6J4
Uniprot:D4A6J4
Length = 949
Score = 266 (98.7 bits), Expect = 8.4e-22, P = 8.4e-22
Identities = 71/216 (32%), Positives = 109/216 (50%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F + ++ W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEVFHRIKVTHDHKDGTVEFNWKRYRLFNHTACL 297
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +L M+D + V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 298 VLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQ 357
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD--HPP 186
G S P T+ P D T + + +++ E +P D D HPP
Sbjct: 358 GG-SLPSL--TSIPG--DPMLTSERQTDGTQMYIFTKQIANES-ERPPPKWDKSDQAHPP 411
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P + T + G D RLY ++ +HFL S D +
Sbjct: 412 IHPTKY-TSSLQGDDR-RLYEFIVRHFLACCSQDAQ 445
>UNIPROTKB|K7EMT6 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
Pfam:PF01131 EMBL:AC127537 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
HGNC:HGNC:11992 Ensembl:ENST00000581536 Uniprot:K7EMT6
Length = 163
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 46/121 (38%), Positives = 72/121 (59%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEWERQKLFDFDVAT 68
YG CQ PTLGF V+R+ I +F PE F H V + ++ ++ W+R +LF+
Sbjct: 3 YGSCQFPTLGFVVERFKAIQAFVPEIF---HRIKVTHDHKDGIVEFNWKRHRLFNHTACL 59
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +L ++D + V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 60 VLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQ 119
Query: 129 G 129
G
Sbjct: 120 G 120
>TIGR_CMR|BA_1905 [details] [associations]
symbol:BA_1905 "DNA topoisomerase III" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 HSSP:P14294
HOGENOM:HOG000086847 KO:K03169 ProtClustDB:PRK07726
TIGRFAMs:TIGR01056 RefSeq:NP_844316.1 RefSeq:YP_018548.1
RefSeq:YP_028031.1 ProteinModelPortal:Q81RY0 DNASU:1086238
EnsemblBacteria:EBBACT00000010748 EnsemblBacteria:EBBACT00000015345
EnsemblBacteria:EBBACT00000022649 GeneID:1086238 GeneID:2818036
GeneID:2849054 KEGG:ban:BA_1905 KEGG:bar:GBAA_1905 KEGG:bat:BAS1767
OMA:GAYMTWA BioCyc:BANT260799:GJAJ-1836-MONOMER
BioCyc:BANT261594:GJ7F-1910-MONOMER InterPro:IPR025589 Pfam:PF13342
Uniprot:Q81RY0
Length = 714
Score = 148 (57.2 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 52/213 (24%), Positives = 90/213 (42%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ---KLFDFDVATM 69
G QTPTL V+R +I +FK E FW + G + +WE+ +L D D+A
Sbjct: 198 GRVQTPTLALIVKREKEIENFKSEPFWEVFATFNIEGKKYDGKWEKDNESRLQDPDMANK 257
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
Q + V ++ +++ P N +L A+ A + P+ + + + LY +G
Sbjct: 258 IAAFC-QGKPAVVKEMKTERKEFQPPLLFNLSSLQATANKAFKFSPKKTLDITQALYQKG 316
Query: 130 FISYPRTEST--AYPSSFDFRGTLSALANNPVWGDY----VERLLA-EGYAKPRSGTDAG 182
+SYPR++S + F L L+ + VE ++ + Y + TD
Sbjct: 317 IVSYPRSDSNYVTQGEAATFPDILQKLSQFDEYKGLLPAPVESIMNNKRYVNEKKVTD-- 374
Query: 183 DHPPITPMRSATE-DMLGKDAWRLYSYVCQHFL 214
H I P T L D ++Y + + +
Sbjct: 375 -HYAIIPTEQVTNPSRLSGDEKKIYDMIVRRLI 406
>TIGR_CMR|BA_0375 [details] [associations]
symbol:BA_0375 "DNA topoisomerase III" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 RefSeq:NP_842919.1
RefSeq:YP_016995.1 RefSeq:YP_026641.1 HSSP:P14294
ProteinModelPortal:Q81Z97 IntAct:Q81Z97 DNASU:1084121
EnsemblBacteria:EBBACT00000010088 EnsemblBacteria:EBBACT00000017365
EnsemblBacteria:EBBACT00000020979 GeneID:1084121 GeneID:2819802
GeneID:2849354 KEGG:ban:BA_0375 KEGG:bar:GBAA_0375 KEGG:bat:BAS0361
HOGENOM:HOG000086847 KO:K03169 OMA:LSNRRCP ProtClustDB:PRK07726
BioCyc:BANT260799:GJAJ-403-MONOMER
BioCyc:BANT261594:GJ7F-413-MONOMER TIGRFAMs:TIGR01056
Uniprot:Q81Z97
Length = 729
Score = 144 (55.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 57/223 (25%), Positives = 94/223 (42%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE----RQKLFDFDVAT 68
G QTPT+ R +I +FK + ++ + Q +LKL W+ + F+ +
Sbjct: 189 GRVQTPTVAMIANREDEIKNFKAQTYYGIE---AQTTNQLKLTWQDANGNSRSFNKEKID 245
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
K + V++I +KQ+ P + L + A+ GY + + + ++LY Q
Sbjct: 246 GIVK-GLDKHNATVLEIDKKQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQ 304
Query: 129 G-FISYPRTESTAYPSSFDFRGTLSALANNPVWGDY---VERLLAEGYAKPRSGTD---A 181
++YPRT+S Y SS D GTL G+Y ++L + +S D
Sbjct: 305 HKVLTYPRTDSR-YISS-DIVGTLPERLKACGVGEYRPLAHKVLQKPIKANKSFVDDSKV 362
Query: 182 GDHPPITPMRSATEDMLGKDAWR-LYSYVCQHFLGTVSPDCKY 223
DH I P D R +Y V + FL + P +Y
Sbjct: 363 SDHHAIIPTEGYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEY 405
>TIGR_CMR|SO_2705 [details] [associations]
symbol:SO_2705 "DNA topoisomerase I" species:211586
"Shewanella oneidensis MR-1" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013263 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF08272
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006265 GO:GO:0003918
SMART:SM00493 GO:GO:0003917 HOGENOM:HOG000004018 KO:K03168
OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 HSSP:P06612 RefSeq:NP_718289.1
ProteinModelPortal:Q8EDN8 SMR:Q8EDN8 GeneID:1170406
KEGG:son:SO_2705 PATRIC:23525033 Uniprot:Q8EDN8
Length = 878
Score = 143 (55.4 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 62/217 (28%), Positives = 93/217 (42%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD--FDVATMF 70
G Q+ + V+R +I +F PE+FW +H L E L E K D F+
Sbjct: 202 GRVQSVAVRLVVERESEIKAFVPEEFWDVHAQLNTPSSEA-LRMEVVKYLDSAFEPTNEQ 260
Query: 71 QKLV----MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
Q L + +VI +K T L + AS+ LG+G + M +A+RLY
Sbjct: 261 QALAAVQALSSASFKVIAREDKATQSKPSAPFITSTLQQAASTRLGFGVKKTMMMAQRLY 320
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGD-- 183
G I+Y RT+ST L ++ + +Y + L A+P R G+ G
Sbjct: 321 EAGHITYMRTDSTNLSQE-----ALDSV-REMIGKEYGAKYLP---AEPIRYGSKEGAQE 371
Query: 184 -HPPITPMR-----SATEDMLGKDAWRLYSYVCQHFL 214
H I P +A DM +DA RLY + + F+
Sbjct: 372 AHEAIRPSNVKVEAAALTDM-ERDAQRLYELIWRQFV 407
>UNIPROTKB|P06612 [details] [associations]
symbol:topA species:83333 "Escherichia coli K-12"
[GO:0006265 "DNA topological change" evidence=IEA;IGI] [GO:0005694
"chromosome" evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0022616 "DNA strand
elongation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IMP] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA;IMP] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005733 InterPro:IPR013263
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF08272 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 EMBL:M15041 GO:GO:0006265
GO:GO:0003918 PROSITE:PS50880 SMART:SM00493 GO:GO:0022616
GO:GO:0003917 EMBL:X04475 PIR:E64875 RefSeq:NP_415790.1
RefSeq:YP_489542.1 PDB:1CY0 PDB:1CY1 PDB:1CY2 PDB:1CY4 PDB:1CY6
PDB:1CY7 PDB:1CY8 PDB:1CY9 PDB:1CYY PDB:1ECL PDB:1MW8 PDB:1MW9
PDB:1YUA PDB:3PWT PDB:3PX7 PDBsum:1CY0 PDBsum:1CY1 PDBsum:1CY2
PDBsum:1CY4 PDBsum:1CY6 PDBsum:1CY7 PDBsum:1CY8 PDBsum:1CY9
PDBsum:1CYY PDBsum:1ECL PDBsum:1MW8 PDBsum:1MW9 PDBsum:1YUA
PDBsum:3PWT PDBsum:3PX7 ProteinModelPortal:P06612 SMR:P06612
DIP:DIP-11011N IntAct:P06612 MINT:MINT-1218330 PaxDb:P06612
PRIDE:P06612 EnsemblBacteria:EBESCT00000004769
EnsemblBacteria:EBESCT00000004770 EnsemblBacteria:EBESCT00000004771
EnsemblBacteria:EBESCT00000004772 EnsemblBacteria:EBESCT00000004773
EnsemblBacteria:EBESCT00000016049 GeneID:12930585 GeneID:945862
KEGG:ecj:Y75_p1248 KEGG:eco:b1274 PATRIC:32117806 EchoBASE:EB1006
EcoGene:EG11013 eggNOG:COG0551 HOGENOM:HOG000004018 KO:K03168
OMA:EFWDIHA ProtClustDB:PRK07561 BioCyc:EcoCyc:EG11013-MONOMER
BioCyc:ECOL316407:JW1266-MONOMER BioCyc:MetaCyc:EG11013-MONOMER
EvolutionaryTrace:P06612 Genevestigator:P06612 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 Uniprot:P06612
Length = 865
Score = 140 (54.3 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 56/221 (25%), Positives = 94/221 (42%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVATMFQ 71
G Q+ + V+R +I +F PE+FW + +G L L+ Q F Q
Sbjct: 194 GRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQ 253
Query: 72 KL----VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+++ V++ +K + T L + AS+ LG+G + M +A+RLY
Sbjct: 254 TQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYE 313
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
G+I+Y RT+ST S D + ++ Y+ + YA + +A H I
Sbjct: 314 AGYITYMRTDSTNL--SQDAVNMVRGYISDNFGKKYLPESPNQ-YASKENSQEA--HEAI 368
Query: 188 TP-----MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P M + +DM DA +LY + + F+ KY
Sbjct: 369 RPSDVNVMAESLKDMEA-DAQKLYQLIWRQFVACQMTPAKY 408
>UNIPROTKB|Q9KRB2 [details] [associations]
symbol:topA "DNA topoisomerase 1" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003917 "DNA
topoisomerase type I activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013263 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF08272 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0046872
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006265 GO:GO:0003918
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
KO:K03168 OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 PIR:B82163 RefSeq:NP_231366.1
ProteinModelPortal:Q9KRB2 SMR:Q9KRB2 DNASU:2613735 GeneID:2613735
KEGG:vch:VC1730 PATRIC:20082518 Uniprot:Q9KRB2
Length = 876
Score = 140 (54.3 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 60/226 (26%), Positives = 99/226 (43%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQKLFDFDVATMFQ 71
G Q+ + V+R +I +F PE+FW ++ L + + +L ++ F +
Sbjct: 202 GRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETE 261
Query: 72 KLV----MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
L + EV +K + T L + AS+ LGYG + M LA+RLY
Sbjct: 262 ALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYE 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGY--AKPR---SGTDAG 182
G+I+Y RT+ST LSA A + G Y+ + E Y ++P S +A
Sbjct: 322 AGYITYMRTDST----------NLSAEAVENLRG-YITKHYGEAYLPSQPNVYGSKQNAQ 370
Query: 183 D-HPPITP--MRSATEDMLGK--DAWRLYSYVCQHFLGTVSPDCKY 223
+ H I P + +D+ G DA +LY+ + F+ +Y
Sbjct: 371 EAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQY 416
>TIGR_CMR|VC_1730 [details] [associations]
symbol:VC_1730 "DNA topoisomerase I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005733 InterPro:IPR013263
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF08272 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006265 GO:GO:0003918 PROSITE:PS50880 SMART:SM00493
GO:GO:0003917 eggNOG:COG0551 KO:K03168 OMA:EFWDIHA
ProtClustDB:PRK07561 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 PIR:B82163 RefSeq:NP_231366.1
ProteinModelPortal:Q9KRB2 SMR:Q9KRB2 DNASU:2613735 GeneID:2613735
KEGG:vch:VC1730 PATRIC:20082518 Uniprot:Q9KRB2
Length = 876
Score = 140 (54.3 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 60/226 (26%), Positives = 99/226 (43%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQKLFDFDVATMFQ 71
G Q+ + V+R +I +F PE+FW ++ L + + +L ++ F +
Sbjct: 202 GRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETE 261
Query: 72 KLV----MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
L + EV +K + T L + AS+ LGYG + M LA+RLY
Sbjct: 262 ALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYE 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGY--AKPR---SGTDAG 182
G+I+Y RT+ST LSA A + G Y+ + E Y ++P S +A
Sbjct: 322 AGYITYMRTDST----------NLSAEAVENLRG-YITKHYGEAYLPSQPNVYGSKQNAQ 370
Query: 183 D-HPPITP--MRSATEDMLGK--DAWRLYSYVCQHFLGTVSPDCKY 223
+ H I P + +D+ G DA +LY+ + F+ +Y
Sbjct: 371 EAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQY 416
>UNIPROTKB|C9JEI7 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
Pfam:PF01131 SMART:SM00436 Pfam:PF01751 InterPro:IPR006171
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
HOGENOM:HOG000184378 IPI:IPI01014062 ProteinModelPortal:C9JEI7
STRING:C9JEI7 Ensembl:ENST00000424393 ArrayExpress:C9JEI7
Bgee:C9JEI7 Uniprot:C9JEI7
Length = 246
Score = 131 (51.2 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL 41
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVL 243
>TIGR_CMR|CHY_1794 [details] [associations]
symbol:CHY_1794 "DNA topoisomerase I" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
HOGENOM:HOG000004018 KO:K03168 OMA:EFWDIHA Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 RefSeq:YP_360614.1
ProteinModelPortal:Q3AB70 STRING:Q3AB70 GeneID:3726845
KEGG:chy:CHY_1794 PATRIC:21276699
BioCyc:CHYD246194:GJCN-1793-MONOMER Uniprot:Q3AB70
Length = 694
Score = 131 (51.2 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 52/229 (22%), Positives = 96/229 (41%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV--QNGYELKLEWERQKLFDFDVATMF 70
G Q+ + +R +I F PE++W+L +L + ++ KL + + +
Sbjct: 164 GRVQSVAVRLICEREEEIEKFVPEEYWSLTAHLEAEKKPFKAKLSKYQNRKIEIKNKDEV 223
Query: 71 QKLVMQ--DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY-- 126
++++ + R +V+ I++K K P T L + AS L + + MQ+A+ LY
Sbjct: 224 ERIIAEVSQRDFKVVKITKKLTKKSAPEPFITSTLQQEASKRLNFSAKKTMQIAQALYEG 283
Query: 127 -------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
G ++Y RT+ST + + +A N +YV E K G
Sbjct: 284 LEIGEYGVTGLVTYIRTDSTRVAE--EAKAKAAAYIKNTFGEEYVG---TEKKTKAPKGK 338
Query: 180 DAGDHPPITP--MRSATEDM---LGKDAWRLYSYVCQHFLGTVSPDCKY 223
H I P + E + L D ++LY + + F+ + D +Y
Sbjct: 339 IQDAHEAIRPTDIEKDPEKIKQYLTPDQYKLYKLIWERFVASQMSDAQY 387
>TIGR_CMR|SPO_3079 [details] [associations]
symbol:SPO_3079 "DNA topoisomerase I" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 KO:K03168 ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 HOGENOM:HOG000004020 OMA:GKYGPYL
RefSeq:YP_168282.1 ProteinModelPortal:Q5LNX4 GeneID:3196046
KEGG:sil:SPO3079 PATRIC:23379603 Uniprot:Q5LNX4
Length = 880
Score = 131 (51.2 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 56/208 (26%), Positives = 91/208 (43%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNG--YELKL-EWERQKLFDFDVAT 68
G Q+ L V+R ++I +FKP ++W++ L G YE +L KL D++
Sbjct: 168 GRVQSVCLRLIVEREMEIEAFKPVEYWSVKALLETPRGQVYEARLVTLAGNKLDKMDISN 227
Query: 69 MFQ-KLVMQ---DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
Q +L +Q R L + + K ++ T L + AS G G + M A+R
Sbjct: 228 ATQAELAVQAITSRALSIQSVEAKPAARNPSAPFMTSTLQQEASRKFGMGARHCMSAAQR 287
Query: 125 LYTQGFISYPRTESTAY-PSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
LY G I+Y RT+ P + T A+A+ +YV K ++ +A +
Sbjct: 288 LYEAGHITYMRTDGIDMAPEAV--MATRDAIADR-FGAEYVPDSPRMYKNKAKNAQEAHE 344
Query: 184 HPPITPMR--SATEDMLGKDAWRLYSYV 209
T MR +A + +D RLY +
Sbjct: 345 CIRPTDMRKDAAALKLKDEDQRRLYDLI 372
>TIGR_CMR|CJE_1854 [details] [associations]
symbol:CJE_1854 "DNA topoisomerase I" species:195099
"Campylobacter jejuni RM1221" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
HOGENOM:HOG000004018 KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 ProtClustDB:PRK05582 RefSeq:YP_179824.1
ProteinModelPortal:Q5HSB1 STRING:Q5HSB1 GeneID:3232481
KEGG:cjr:CJE1854 PATRIC:20045540 OMA:RYTMASI
BioCyc:CJEJ195099:GJC0-1893-MONOMER Uniprot:Q5HSB1
Length = 700
Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 57/227 (25%), Positives = 98/227 (43%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKL-EWERQKLFDFDVATMFQ 71
G Q+ L V R +I +F P +++++ + Q + +L E+++ K+ + +
Sbjct: 166 GRVQSAALKIIVDREKEIRAFVPLEYFSID-MIFQKDLDAELVEFDKAKIEKLTITNKDR 224
Query: 72 -KLVMQ---DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY- 126
KL+++ + + + DI K+ P T L + AS+ LG+ P+ M +A++LY
Sbjct: 225 AKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTMMIAQKLYE 284
Query: 127 -------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG-DYVERLLAEGYAKPRSG 178
G I+Y RT+S AN +G DY+ A Y G
Sbjct: 285 GVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQAN---FGKDYLPSK-ANVYTTKTKG 340
Query: 179 TDAGDHPPITPMR-SATEDM----LGKDAWRLYSYVCQHFLGT-VSP 219
H I P S T ++ L KD +LY+ + FL +SP
Sbjct: 341 AQEA-HEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSP 386
>TIGR_CMR|CPS_1197 [details] [associations]
symbol:CPS_1197 "DNA topoisomerase I" species:167879
"Colwellia psychrerythraea 34H" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013263 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF08272
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006265 GO:GO:0003918
SMART:SM00493 GO:GO:0003917 eggNOG:COG0551 HOGENOM:HOG000004018
KO:K03168 OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 RefSeq:YP_267940.1
ProteinModelPortal:Q486S5 SMR:Q486S5 STRING:Q486S5 GeneID:3521498
KEGG:cps:CPS_1197 PATRIC:21465639
BioCyc:CPSY167879:GI48-1278-MONOMER Uniprot:Q486S5
Length = 899
Score = 127 (49.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 55/219 (25%), Positives = 95/219 (43%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVATMFQ 71
G Q+ + V++ +I +F P++FW + G L L+ + F T +
Sbjct: 201 GRVQSVAVKLVVEKEREIKAFDPKEFWEIAVDTHASTGEVLTLDVTHENGKAFKPTTEKE 260
Query: 72 KLVMQDRILEVID--ISEKQE--SKVRPCG-LNTVNLLKVASSALGYGPQMAMQLAERLY 126
IL+ D +S++++ SK P T L + AS+ LGYG + M LA+RLY
Sbjct: 261 TNAAL-AILKPADYAVSKREDRPSKSTPSAPFITSTLQQAASTKLGYGVKRTMGLAQRLY 319
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD--H 184
G I+Y RT+ST S D ++ +Y+ A+ Y +A +
Sbjct: 320 EAGHITYMRTDSTNL--SKDAVEMCRKYISDSFGDNYLPEN-AKTYGSKAGAQEAHEAIR 376
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P + +A + + DA +LY + + F+ +Y
Sbjct: 377 PSNVKLEAAFLEGIEADAKKLYELIWRQFVACQMTAARY 415
>TIGR_CMR|BA_3971 [details] [associations]
symbol:BA_3971 "DNA topoisomerase I" species:198094
"Bacillus anthracis str. Ames" [GO:0003917 "DNA topoisomerase type
I activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
HOGENOM:HOG000004018 KO:K03168 OMA:EFWDIHA Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 ProtClustDB:PRK05582
RefSeq:NP_846214.1 RefSeq:YP_020610.1 RefSeq:YP_029935.1
HSSP:P06612 ProteinModelPortal:Q81WK2 IntAct:Q81WK2 DNASU:1086791
EnsemblBacteria:EBBACT00000009759 EnsemblBacteria:EBBACT00000014833
EnsemblBacteria:EBBACT00000023600 GeneID:1086791 GeneID:2818374
GeneID:2850818 KEGG:ban:BA_3971 KEGG:bar:GBAA_3971 KEGG:bat:BAS3684
BioCyc:BANT260799:GJAJ-3742-MONOMER
BioCyc:BANT261594:GJ7F-3859-MONOMER Uniprot:Q81WK2
Length = 692
Score = 124 (48.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 55/225 (24%), Positives = 97/225 (43%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELK---LEWERQKLF-DFDV 66
G Q+ + ++R +I SF+PE+FWT+ V+ + +E ++ E+ +L + V
Sbjct: 165 GRVQSVAVRLIIEREREIQSFEPEEFWTIKTEFVKGKDTFEASFYGVDGEKVQLTNETQV 224
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ ++L +D V +++ K+ + T +L + A+ L + M LA++LY
Sbjct: 225 NEIIEQL--KDNAFSVENVTRKERKRNPALPFTTSSLQQEAARKLNMRAKKTMMLAQQLY 282
Query: 127 ---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRS 177
T G I+Y RT+ST T A + Y + K
Sbjct: 283 EGIDLGKQGTVGLITYMRTDSTRISE------TAQTEARTYITEAYGTEYIGAEKKKETK 336
Query: 178 GTDAGD-HPPITP---MRSATE--DMLGKDAWRLYSYVCQHFLGT 216
++A D H I P MR E L +D RLY + + F+ +
Sbjct: 337 KSNAQDAHEAIRPTSVMRKPEELKSFLSRDQLRLYKLIWERFVAS 381
>TIGR_CMR|CBU_2000 [details] [associations]
symbol:CBU_2000 "DNA topoisomerase I" species:227377
"Coxiella burnetii RSA 493" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 HOGENOM:HOG000004018 KO:K03168 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 ProtClustDB:PRK06599 OMA:RYTMASI
HSSP:P06612 RefSeq:NP_820975.1 ProteinModelPortal:Q83AA5
PRIDE:Q83AA5 GeneID:1209913 KEGG:cbu:CBU_2000 PATRIC:17932741
BioCyc:CBUR227377:GJ7S-1973-MONOMER Uniprot:Q83AA5
Length = 765
Score = 121 (47.7 bits), Expect = 0.00012, P = 0.00012
Identities = 33/124 (26%), Positives = 65/124 (52%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHP--YLVQNGYELKL-EWERQKLFDFDVATM 69
G Q+P L V+R ++I +F+ +++WT+H + Q ++ +L E++ +KL F +
Sbjct: 169 GRVQSPALRLIVEREIEIENFESQEYWTIHADCHAQQQPFDARLIEFQGEKLEQFSIVNE 228
Query: 70 FQKLVMQDRILEV----IDISE--KQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQLA 122
Q +D I + + +++ K+E K P T + + A+ LG+ MQ+A
Sbjct: 229 KQAHETRDAITQAANGKLTVAKVVKRERKRNPAPPFITSTMQQEAARKLGFSASKTMQIA 288
Query: 123 ERLY 126
++LY
Sbjct: 289 QQLY 292
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.427 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 224 224 0.00099 112 3 11 22 0.37 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 47
No. of states in DFA: 616 (65 KB)
Total size of DFA: 195 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.03u 0.07s 19.10t Elapsed: 00:00:01
Total cpu time: 19.04u 0.07s 19.11t Elapsed: 00:00:01
Start: Sat May 11 06:46:49 2013 End: Sat May 11 06:46:50 2013