BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045217
(224 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359478029|ref|XP_002264970.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Vitis vinifera]
Length = 894
Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust.
Identities = 174/216 (80%), Positives = 192/216 (88%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRYLQI +FKPEKFW LHPY+ NGYEL+LEWER KLFD DVA
Sbjct: 234 VISYGPCQTPTLGFCVQRYLQINTFKPEKFWALHPYITHNGYELQLEWERNKLFDLDVAV 293
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQ LVM+D I+EV DISEKQESK RP GLNTVNLLKVASSALG+GPQMAMQLAERLYTQ
Sbjct: 294 MFQNLVMEDGIVEVTDISEKQESKSRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQ 353
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDF+ TL NNP WGDYV++LL +G+ +PRSGTDAGDHPPIT
Sbjct: 354 GFISYPRTESTAYPSSFDFKSTLGMQTNNPTWGDYVQKLLDDGFHRPRSGTDAGDHPPIT 413
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PMR+A EDMLG DAW+LY YVCQHF+GTVSPDCKY+
Sbjct: 414 PMRAANEDMLGNDAWKLYQYVCQHFIGTVSPDCKYV 449
>gi|296089603|emb|CBI39422.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 174/216 (80%), Positives = 192/216 (88%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRYLQI +FKPEKFW LHPY+ NGYEL+LEWER KLFD DVA
Sbjct: 250 VISYGPCQTPTLGFCVQRYLQINTFKPEKFWALHPYITHNGYELQLEWERNKLFDLDVAV 309
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQ LVM+D I+EV DISEKQESK RP GLNTVNLLKVASSALG+GPQMAMQLAERLYTQ
Sbjct: 310 MFQNLVMEDGIVEVTDISEKQESKSRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQ 369
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDF+ TL NNP WGDYV++LL +G+ +PRSGTDAGDHPPIT
Sbjct: 370 GFISYPRTESTAYPSSFDFKSTLGMQTNNPTWGDYVQKLLDDGFHRPRSGTDAGDHPPIT 429
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PMR+A EDMLG DAW+LY YVCQHF+GTVSPDCKY+
Sbjct: 430 PMRAANEDMLGNDAWKLYQYVCQHFIGTVSPDCKYV 465
>gi|224131522|ref|XP_002321105.1| predicted protein [Populus trichocarpa]
gi|222861878|gb|EEE99420.1| predicted protein [Populus trichocarpa]
Length = 837
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 177/215 (82%), Positives = 196/215 (91%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRYLQIT+FKPEKFW L P+++ +GYEL+LEWER KLFD DVA
Sbjct: 179 VISYGPCQTPTLGFCVQRYLQITTFKPEKFWALRPHVMVDGYELQLEWERHKLFDLDVAL 238
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQKLV+QDRILEV D+SEKQESK RP GLNTVNLLK+ASSALG+GPQ+ MQLAERLY Q
Sbjct: 239 MFQKLVLQDRILEVTDMSEKQESKGRPPGLNTVNLLKIASSALGFGPQVTMQLAERLYIQ 298
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDF+GTL ALANNP+WGDYV+ LL+ GY KP+SG DAGDHPPIT
Sbjct: 299 GFISYPRTESTAYPSSFDFKGTLGALANNPMWGDYVQGLLSGGYHKPQSGKDAGDHPPIT 358
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMRSA EDMLG+DAWRLY YVCQHFLGTVSPDCKY
Sbjct: 359 PMRSANEDMLGRDAWRLYQYVCQHFLGTVSPDCKY 393
>gi|356540116|ref|XP_003538536.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Glycine max]
Length = 863
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 172/216 (79%), Positives = 192/216 (88%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRYLQI +FKPEKFW+LHPY++QNGYE++LEW+R KLFD +VA
Sbjct: 204 VISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQNGYEIQLEWQRGKLFDINVAM 263
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQKLV +D +LEV +ISEKQE+K RP GLNTVNLLKVASSALG+GPQMAMQLAERLYTQ
Sbjct: 264 MFQKLVSEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQ 323
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYP SFDFRG LSA NNP WG+YV+ LL GY KPR GTD GDHPPIT
Sbjct: 324 GFISYPRTESTAYPPSFDFRGVLSAQTNNPTWGNYVQGLLTNGYQKPRLGTDVGDHPPIT 383
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PMRSA EDMLG DAW+LY Y+CQHF+GTVSPDCKYI
Sbjct: 384 PMRSAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYI 419
>gi|255550676|ref|XP_002516387.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
gi|223544485|gb|EEF46004.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
Length = 865
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/216 (80%), Positives = 193/216 (89%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRYLQI +FKPEKFW+L P+L+ +GY+L+LEWER +LFD DVA
Sbjct: 206 VISYGPCQTPTLGFCVQRYLQIATFKPEKFWSLRPHLIIDGYQLQLEWERHRLFDLDVAL 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQK V+QD ILEVIDIS+KQE+K RP GLNTVNLLKVASSALG+GPQMAMQLAERLYTQ
Sbjct: 266 MFQKQVLQDGILEVIDISQKQETKGRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQ 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDF+ LS L NN +WGD V RLL EGY KPR GTDAGDHPPIT
Sbjct: 326 GFISYPRTESTAYPSSFDFKSILSTLLNNSIWGDSVRRLLVEGYHKPRLGTDAGDHPPIT 385
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
P+R ATEDMLGKDAWRLY YVCQHF+G+VSPDCKY+
Sbjct: 386 PIRLATEDMLGKDAWRLYQYVCQHFIGSVSPDCKYV 421
>gi|449459882|ref|XP_004147675.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus]
Length = 867
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/216 (78%), Positives = 191/216 (88%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+LQIT+FKPEKFW++ PY++Q GYEL L+WER KLFD DV
Sbjct: 206 LISYGPCQTPTLGFCVQRHLQITTFKPEKFWSVCPYILQTGYELNLDWERGKLFDCDVTA 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQK V++D I EV +ISEKQE+KVRP GLNTVNLLKVASSALG+GPQMAMQLAERLYTQ
Sbjct: 266 MFQKRVIEDGIAEVTEISEKQENKVRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQ 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDF+GTL L NP WGDYV LL++GY+KPRSGTD GDHPPIT
Sbjct: 326 GFISYPRTESTAYPSSFDFKGTLHTLVKNPEWGDYVRMLLSDGYSKPRSGTDVGDHPPIT 385
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PM ATEDMLG+DAWRLY YVCQHF+G++S DCKYI
Sbjct: 386 PMCLATEDMLGRDAWRLYQYVCQHFIGSLSSDCKYI 421
>gi|449498877|ref|XP_004160658.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus]
Length = 864
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/216 (78%), Positives = 191/216 (88%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+LQIT+FKPEKFW++ PY++Q GYEL L+WER KLFD DV
Sbjct: 203 LISYGPCQTPTLGFCVQRHLQITTFKPEKFWSVCPYILQTGYELNLDWERGKLFDCDVTA 262
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQK V++D I EV +ISEKQE+KVRP GLNTVNLLKVASSALG+GPQMAMQLAERLYTQ
Sbjct: 263 MFQKRVIEDGIAEVTEISEKQENKVRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQ 322
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDF+GTL L NP WGDYV LL++GY+KPRSGTD GDHPPIT
Sbjct: 323 GFISYPRTESTAYPSSFDFKGTLHTLVKNPEWGDYVRMLLSDGYSKPRSGTDVGDHPPIT 382
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PM ATEDMLG+DAWRLY YVCQHF+G++S DCKYI
Sbjct: 383 PMCLATEDMLGRDAWRLYQYVCQHFIGSLSSDCKYI 418
>gi|357462899|ref|XP_003601731.1| DNA topoisomerase [Medicago truncatula]
gi|355490779|gb|AES71982.1| DNA topoisomerase [Medicago truncatula]
Length = 1024
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/213 (79%), Positives = 188/213 (88%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YGPCQTPTLGFCVQRYLQI +FKPEKFW+L PY++Q+GYE+ LEW+R KLFD +VA MFQ
Sbjct: 358 YGPCQTPTLGFCVQRYLQINTFKPEKFWSLQPYIIQSGYEILLEWQRSKLFDINVAMMFQ 417
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
KLV D I+EV +ISEK E+K RP GLNTVNLLKVASSALG+GPQMAMQLAERLYTQGFI
Sbjct: 418 KLVADDGIVEVTNISEKPETKGRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFI 477
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMR 191
SYPRTESTAYP SFDFR LSA NNP WG+YVE LLA GY KPRSGTD GDHPPITPM+
Sbjct: 478 SYPRTESTAYPPSFDFRSALSAQRNNPTWGNYVEGLLASGYQKPRSGTDVGDHPPITPMK 537
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
SA+EDMLG DAW+LY Y+CQ+F+GTVSPDCKYI
Sbjct: 538 SASEDMLGNDAWKLYQYICQYFIGTVSPDCKYI 570
>gi|297826655|ref|XP_002881210.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297327049|gb|EFH57469.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 865
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 161/216 (74%), Positives = 191/216 (88%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRY+ I +FKPEKFW L PY++++GYEL+LEWER++LFD + AT
Sbjct: 207 VISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYIIKDGYELQLEWERRRLFDLEAAT 266
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+FQKLV++ R +V+D+SEKQE K RP GLNTV+LLKVASSALG+GPQ AM LAERLYTQ
Sbjct: 267 VFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVSLLKVASSALGFGPQTAMHLAERLYTQ 326
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDF TL A +NPVWG YV+RLL++G+ KP+SGTDAGDHPPIT
Sbjct: 327 GFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYVQRLLSDGFHKPKSGTDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PMR+ATE M+G DAWRLY YVCQHF+GTVSP+CKYI
Sbjct: 387 PMRAATEVMVGGDAWRLYQYVCQHFIGTVSPNCKYI 422
>gi|42569543|ref|NP_180760.2| DNA topoisomerase III [Arabidopsis thaliana]
gi|330253525|gb|AEC08619.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 865
Score = 359 bits (921), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 162/216 (75%), Positives = 189/216 (87%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRY+ I +FKPEKFW L PY+ ++GYEL+LEWER++LFD + AT
Sbjct: 207 VISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYIRKDGYELQLEWERRRLFDLEAAT 266
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+FQKLV++ R +V+D+SEKQE K RP GLNTVNLLKVASSALG+GPQ AM LAERLYTQ
Sbjct: 267 VFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLLKVASSALGFGPQTAMHLAERLYTQ 326
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDF TL A +NPVWG YV+RLL++G+ P+SGTDAGDHPPIT
Sbjct: 327 GFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYVQRLLSDGFHMPKSGTDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PMR+ATE M+G DAWRLY YVCQHFLGTVSP+CKYI
Sbjct: 387 PMRAATEVMVGGDAWRLYQYVCQHFLGTVSPNCKYI 422
>gi|79323918|ref|NP_001031463.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|51969720|dbj|BAD43552.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
gi|51969988|dbj|BAD43686.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
gi|330253526|gb|AEC08620.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 838
Score = 358 bits (920), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 162/216 (75%), Positives = 189/216 (87%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRY+ I +FKPEKFW L PY+ ++GYEL+LEWER++LFD + AT
Sbjct: 180 VISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYIRKDGYELQLEWERRRLFDLEAAT 239
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+FQKLV++ R +V+D+SEKQE K RP GLNTVNLLKVASSALG+GPQ AM LAERLYTQ
Sbjct: 240 VFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLLKVASSALGFGPQTAMHLAERLYTQ 299
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDF TL A +NPVWG YV+RLL++G+ P+SGTDAGDHPPIT
Sbjct: 300 GFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYVQRLLSDGFHMPKSGTDAGDHPPIT 359
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PMR+ATE M+G DAWRLY YVCQHFLGTVSP+CKYI
Sbjct: 360 PMRAATEVMVGGDAWRLYQYVCQHFLGTVSPNCKYI 395
>gi|62319698|dbj|BAD95240.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 865
Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 160/216 (74%), Positives = 187/216 (86%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRY+ I +FKPEKFW L P + ++GYEL+LEWER++LFD + AT
Sbjct: 207 VISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPCIRKDGYELQLEWERRRLFDLEAAT 266
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+FQKLV++ R +V+D+SEKQE K RP GLNTVNLLKVASSALG+GPQ AM LAERLYTQ
Sbjct: 267 VFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLLKVASSALGFGPQTAMHLAERLYTQ 326
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDF TL A +NPVWG YV+RLL++G+ P+SGTDAGDHPPIT
Sbjct: 327 GFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYVQRLLSDGFHMPKSGTDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PMR+ATE M+G AWRLY YVCQHFLGTVSP+CKYI
Sbjct: 387 PMRAATEVMVGGVAWRLYQYVCQHFLGTVSPNCKYI 422
>gi|414886208|tpg|DAA62222.1| TPA: hypothetical protein ZEAMMB73_837809 [Zea mays]
Length = 374
Score = 348 bits (893), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 156/215 (72%), Positives = 182/215 (84%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+ QIT+FKPEKFW+L Y++++ E++LEW+R+KLFDFDV
Sbjct: 48 VISYGPCQTPTLGFCVQRHQQITTFKPEKFWSLKTYIIKDSDEIQLEWDRKKLFDFDVTV 107
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQK+V+ D L+V DIS K+E K RP GLNTVN+LKVASSALG GPQ AM LAERLYTQ
Sbjct: 108 MFQKMVISDGTLKVADISVKEECKTRPSGLNTVNMLKVASSALGIGPQTAMHLAERLYTQ 167
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDFRG L+AL NNP+W + V +LL G+ KPR G DAGDHPPIT
Sbjct: 168 GFISYPRTESTAYPSSFDFRGALAALLNNPLWSNDVRKLLDAGFVKPRQGHDAGDHPPIT 227
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMRSATE LG DAWRLY Y+CQHF+GTVSPDC+Y
Sbjct: 228 PMRSATEASLGTDAWRLYQYICQHFIGTVSPDCRY 262
>gi|115479969|ref|NP_001063578.1| Os09g0500600 [Oryza sativa Japonica Group]
gi|113631811|dbj|BAF25492.1| Os09g0500600 [Oryza sativa Japonica Group]
gi|215695029|dbj|BAG90220.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 866
Score = 346 bits (887), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 182/215 (84%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRY QIT+FKPEKFW+L Y++++G E++LEW+R+KLFDFDV
Sbjct: 205 VISYGPCQTPTLGFCVQRYQQITTFKPEKFWSLKTYVIKDGNEIQLEWDRKKLFDFDVTV 264
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQK+V D IL+V DIS K+E K RP GLNTVNLLKVASSALG GPQ AM LAERLYTQ
Sbjct: 265 MFQKMVASDGILKVTDISVKEECKARPPGLNTVNLLKVASSALGIGPQTAMHLAERLYTQ 324
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDFR L+ALA+NP+W + V LL G+ KP+ G DAGDHPPIT
Sbjct: 325 GFISYPRTESTAYPSSFDFRSALAALAHNPLWSNDVRTLLDTGFVKPKQGHDAGDHPPIT 384
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMR ATE+ LG DAWRLY Y+CQHF+GTVSPDC+Y
Sbjct: 385 PMRLATEEALGTDAWRLYQYICQHFIGTVSPDCRY 419
>gi|242045216|ref|XP_002460479.1| hypothetical protein SORBIDRAFT_02g029000 [Sorghum bicolor]
gi|241923856|gb|EER97000.1| hypothetical protein SORBIDRAFT_02g029000 [Sorghum bicolor]
Length = 866
Score = 345 bits (886), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 156/215 (72%), Positives = 181/215 (84%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRY QIT+FKPEKFW+L Y++++ E++LEW+R+KLFDFDV
Sbjct: 203 VISYGPCQTPTLGFCVQRYQQITTFKPEKFWSLKTYIIKDSDEIQLEWDRKKLFDFDVTV 262
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQK+V+ D L+V D+S K+E K RP GLNTVN+LKVASSALG GPQ AM LAERLYTQ
Sbjct: 263 MFQKMVISDGSLKVADVSVKEECKTRPSGLNTVNMLKVASSALGIGPQTAMHLAERLYTQ 322
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDFRG L+AL NNP+W + V LL G+ KPR G DAGDHPPIT
Sbjct: 323 GFISYPRTESTAYPSSFDFRGALAALLNNPLWSNDVRTLLDAGFVKPRQGHDAGDHPPIT 382
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMRSATE LG DAWRLY Y+CQHF+GTVSPDC+Y
Sbjct: 383 PMRSATEAALGTDAWRLYQYICQHFIGTVSPDCRY 417
>gi|222641861|gb|EEE69993.1| hypothetical protein OsJ_29901 [Oryza sativa Japonica Group]
Length = 729
Score = 345 bits (885), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 157/212 (74%), Positives = 180/212 (84%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YGPCQTPTLGFCVQRY QIT+FKPEKFW+L Y++++G E++LEW+R+KLFDFDV MFQ
Sbjct: 71 YGPCQTPTLGFCVQRYQQITTFKPEKFWSLKTYVIKDGNEIQLEWDRKKLFDFDVTVMFQ 130
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
K+V D IL+V DIS K+E K RP GLNTVNLLKVASSALG GPQ AM LAERLYTQGFI
Sbjct: 131 KMVASDGILKVTDISVKEECKARPPGLNTVNLLKVASSALGIGPQTAMHLAERLYTQGFI 190
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMR 191
SYPRTESTAYPSSFDFR L+ALA+NP+W + V LL G+ KP+ G DAGDHPPITPMR
Sbjct: 191 SYPRTESTAYPSSFDFRSALAALAHNPLWSNDVRTLLDTGFVKPKQGHDAGDHPPITPMR 250
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
ATE+ LG DAWRLY Y+CQHF+GTVSPDC+Y
Sbjct: 251 LATEEALGTDAWRLYQYICQHFIGTVSPDCRY 282
>gi|218202402|gb|EEC84829.1| hypothetical protein OsI_31918 [Oryza sativa Indica Group]
Length = 866
Score = 342 bits (876), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 156/215 (72%), Positives = 181/215 (84%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRY QIT+FKPEKFW+L Y++++G E++LEW+R+KLFDFDV
Sbjct: 205 VISYGPCQTPTLGFCVQRYQQITTFKPEKFWSLKTYVIKDGNEIQLEWDRKKLFDFDVTV 264
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQK+V IL+V DIS K+E K RP GLNTVNLLKVASSALG GPQ AM LAERLYTQ
Sbjct: 265 MFQKMVASYGILKVTDISVKEECKARPPGLNTVNLLKVASSALGIGPQTAMHLAERLYTQ 324
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTESTAYPSSFDFR L+ALA+NP+W + V LL G+ KP+ G DAGDHPPIT
Sbjct: 325 GFISYPRTESTAYPSSFDFRSALAALAHNPLWSNDVRTLLDTGFVKPKQGHDAGDHPPIT 384
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMR ATE+ LG DAWRLY Y+CQHF+GTVSPDC+Y
Sbjct: 385 PMRLATEEALGTDAWRLYQYICQHFIGTVSPDCRY 419
>gi|357159190|ref|XP_003578369.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Brachypodium
distachyon]
Length = 868
Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 150/215 (69%), Positives = 178/215 (82%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQRY QI +FKPEKFW+L Y++++G E++LEW+R+KLFDFDV
Sbjct: 205 VISYGPCQTPTLGFCVQRYQQINTFKPEKFWSLRTYVIKDGDEIQLEWDRKKLFDFDVTV 264
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MFQK+V D L V DIS K+E K RP GLNTVNLLKVASSALG GPQ AM +AERLYTQ
Sbjct: 265 MFQKMVANDGTLIVTDISVKEECKARPSGLNTVNLLKVASSALGIGPQTAMHMAERLYTQ 324
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTESTAYP+SFDFR LSAL +NP+W + + L+ G+ KPR G DAGDHPPIT
Sbjct: 325 GYISYPRTESTAYPASFDFRSVLSALVHNPLWSNNIRTLMDAGFVKPRQGHDAGDHPPIT 384
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMRSA+E+ L DAWRLY Y+CQHF+GTVSPDC+Y
Sbjct: 385 PMRSASEEALETDAWRLYQYICQHFIGTVSPDCRY 419
>gi|302765975|ref|XP_002966408.1| hypothetical protein SELMODRAFT_168492 [Selaginella moellendorffii]
gi|300165828|gb|EFJ32435.1| hypothetical protein SELMODRAFT_168492 [Selaginella moellendorffii]
Length = 871
Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 135/215 (62%), Positives = 171/215 (79%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ +GPCQTPTLGFCV+R+ QI +F P+ FWTLHP L + G+ L+L+WER ++F+ A
Sbjct: 190 VISFGPCQTPTLGFCVERHTQIITFVPKPFWTLHPRLSKGGHSLQLDWERGRVFEQATAL 249
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ QK V++ L+V+D+S+K+E K RP GLNTVN+LKVAS+ALG GP AMQ+AERLY Q
Sbjct: 250 VPQKAVLKSGSLKVLDVSQKEERKARPTGLNTVNMLKVASTALGMGPHHAMQIAERLYVQ 309
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTESTAYP+SFD + +L L N+PV+GDY L+A G P+SGTDAGDHPPIT
Sbjct: 310 GYISYPRTESTAYPASFDVKESLLPLGNHPVFGDYARSLIAAGVRAPKSGTDAGDHPPIT 369
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMRS TE LG DAWRLY Y+ +HFLG+VSPDCKY
Sbjct: 370 PMRSGTESELGGDAWRLYDYISRHFLGSVSPDCKY 404
>gi|302792781|ref|XP_002978156.1| hypothetical protein SELMODRAFT_233065 [Selaginella moellendorffii]
gi|300154177|gb|EFJ20813.1| hypothetical protein SELMODRAFT_233065 [Selaginella moellendorffii]
Length = 877
Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 135/215 (62%), Positives = 171/215 (79%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ +GPCQTPTLGFCV+R+ QI +F P+ FWTLHP L + G+ L+L+WER ++F+ A
Sbjct: 215 VISFGPCQTPTLGFCVERHTQIITFVPKPFWTLHPRLSKGGHSLQLDWERGRVFEQATAL 274
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ QK V++ L+V+D+S+K+E K RP GLNTVN+LKVAS+ALG GP AMQ+AERLY Q
Sbjct: 275 VPQKAVLKSGSLKVLDVSQKEERKARPTGLNTVNMLKVASTALGMGPHHAMQIAERLYVQ 334
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTESTAYP+SFD + +L L N+PV+GDY L+A G P+SGTDAGDHPPIT
Sbjct: 335 GYISYPRTESTAYPASFDVKESLLPLGNHPVFGDYARSLIAAGVRAPKSGTDAGDHPPIT 394
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMRS TE LG DAWRLY Y+ +HFLG+VSPDCKY
Sbjct: 395 PMRSGTESELGGDAWRLYDYISRHFLGSVSPDCKY 429
>gi|168067110|ref|XP_001785468.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662910|gb|EDQ49709.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 869
Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 131/216 (60%), Positives = 169/216 (78%), Gaps = 1/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+L+IT+F P+ FW + P+L + G++L LEW+R +LFD +VA
Sbjct: 206 VISYGPCQTPTLGFCVERHLRITTFVPQPFWVVRPHLSKGGHQLMLEWDRNRLFDREVAM 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+FQKLV+ + + V D+ +K++ K RP GLNTV++LKVASSAL GP MQ+AERLYTQ
Sbjct: 266 LFQKLVLDAKSVRVADVVKKEDRKTRPHGLNTVDMLKVASSALNMGPHHTMQIAERLYTQ 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G++SYPRTESTAYP+S+D R LS N+P+WGDY L++ G P+SG D GDHPPIT
Sbjct: 326 GYLSYPRTESTAYPASYDIREALSIHRNHPIWGDYASSLMSLGPHPPKSGVDVGDHPPIT 385
Query: 189 PMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCKY 223
P RSATE L G D+WRLY YV +HFLG+VSPDCKY
Sbjct: 386 PTRSATESELGGGDSWRLYEYVTRHFLGSVSPDCKY 421
>gi|170285121|gb|AAI61096.1| LOC100145467 protein [Xenopus (Silurana) tropicalis]
Length = 482
Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 128/218 (58%), Positives = 163/218 (74%), Gaps = 3/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE--LKLEWERQKLFDFDV 66
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L V G E L L+W+R ++FD ++
Sbjct: 198 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQ-VKVSRGQENPLILDWDRVRVFDREI 256
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A MF + + +V +S+K+++K RP LNTV +L+VASSALG GPQ MQ+AERLY
Sbjct: 257 AQMFINITKTAKEAQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLY 316
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+T YP +FD +GTL ANNP W D V+ LLAEG +PR GTDAGDHPP
Sbjct: 317 TQGYISYPRTETTHYPENFDLKGTLRQQANNPFWADMVKTLLAEGINRPRKGTDAGDHPP 376
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITPMRSATE LG DAWRLY Y+ +HF+ T+S DCKY+
Sbjct: 377 ITPMRSATEAELGGDAWRLYEYITRHFIATISHDCKYL 414
>gi|148228452|ref|NP_001082554.1| topoisomerase (DNA) III beta [Xenopus laevis]
gi|28422192|gb|AAH46848.1| MGC53016 protein [Xenopus laevis]
Length = 858
Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 127/218 (58%), Positives = 163/218 (74%), Gaps = 3/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE--LKLEWERQKLFDFDV 66
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L V +G E L L+W+R ++FD ++
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQ-VKVSHGQEHPLSLDWDRVRVFDREI 269
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A MF + + +V +S+K+++K RP LNTV +L+VASSALG GPQ MQ+AERLY
Sbjct: 270 AQMFINITKTAKEAQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLY 329
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+T YP +FD +GTL ANNP W D V+ LLAEG +PR G DAGDHPP
Sbjct: 330 TQGYISYPRTETTHYPENFDLKGTLKQQANNPFWADTVKTLLAEGINRPRKGADAGDHPP 389
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITPMRSATE LG DAWRLY Y+ +HF+ T+S DCKY+
Sbjct: 390 ITPMRSATESELGGDAWRLYEYITRHFIATISHDCKYL 427
>gi|27882184|gb|AAH43953.1| MGC53016 protein, partial [Xenopus laevis]
Length = 698
Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 127/218 (58%), Positives = 163/218 (74%), Gaps = 3/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE--LKLEWERQKLFDFDV 66
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L V +G E L L+W+R ++FD ++
Sbjct: 51 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQ-VKVSHGQEHPLSLDWDRVRVFDREI 109
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A MF + + +V +S+K+++K RP LNTV +L+VASSALG GPQ MQ+AERLY
Sbjct: 110 AQMFINITKTAKEAQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLY 169
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+T YP +FD +GTL ANNP W D V+ LLAEG +PR G DAGDHPP
Sbjct: 170 TQGYISYPRTETTHYPENFDLKGTLKQQANNPFWADTVKTLLAEGINRPRKGADAGDHPP 229
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITPMRSATE LG DAWRLY Y+ +HF+ T+S DCKY+
Sbjct: 230 ITPMRSATESELGGDAWRLYEYITRHFIATISHDCKYL 267
>gi|307219265|ref|NP_001182501.1| topoisomerase (DNA) III beta isoform 1 [Xenopus (Silurana)
tropicalis]
Length = 858
Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 128/218 (58%), Positives = 163/218 (74%), Gaps = 3/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE--LKLEWERQKLFDFDV 66
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L V G E L L+W+R ++FD ++
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQ-VKVSRGQENPLILDWDRVRVFDREI 269
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A MF + + +V +S+K+++K RP LNTV +L+VASSALG GPQ MQ+AERLY
Sbjct: 270 AQMFINITKTAKEAQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLY 329
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+T YP +FD +GTL ANNP W D V+ LLAEG +PR GTDAGDHPP
Sbjct: 330 TQGYISYPRTETTHYPENFDLKGTLRQQANNPFWADMVKTLLAEGINRPRKGTDAGDHPP 389
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITPMRSATE LG DAWRLY Y+ +HF+ T+S DCKY+
Sbjct: 390 ITPMRSATEAELGGDAWRLYEYITRHFIATISHDCKYL 427
>gi|307133770|ref|NP_001120391.2| topoisomerase (DNA) III beta isoform 2 [Xenopus (Silurana)
tropicalis]
Length = 845
Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 128/218 (58%), Positives = 163/218 (74%), Gaps = 3/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE--LKLEWERQKLFDFDV 66
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L V G E L L+W+R ++FD ++
Sbjct: 198 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQ-VKVSRGQENPLILDWDRVRVFDREI 256
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A MF + + +V +S+K+++K RP LNTV +L+VASSALG GPQ MQ+AERLY
Sbjct: 257 AQMFINITKTAKEAQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLY 316
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+T YP +FD +GTL ANNP W D V+ LLAEG +PR GTDAGDHPP
Sbjct: 317 TQGYISYPRTETTHYPENFDLKGTLRQQANNPFWADMVKTLLAEGINRPRKGTDAGDHPP 376
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITPMRSATE LG DAWRLY Y+ +HF+ T+S DCKY+
Sbjct: 377 ITPMRSATEAELGGDAWRLYEYITRHFIATISHDCKYL 414
>gi|443731127|gb|ELU16364.1| hypothetical protein CAPTEDRAFT_182010 [Capitella teleta]
Length = 856
Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 123/219 (56%), Positives = 161/219 (73%), Gaps = 1/219 (0%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFD 65
+ ++ YGPCQTPTLGFCV R+ +I SFKPE FW + +V +G + L+WER ++FD +
Sbjct: 204 STLISYGPCQTPTLGFCVDRHDRIQSFKPETFWVIQMQVVHPSGKMMSLDWERVRIFDNE 263
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
VA MF ++ + ++D+ +K++SK RP LNTV +L+ ASS LG GP M +AERL
Sbjct: 264 VARMFLSMIKANDKAVIVDVQKKEKSKARPMALNTVEMLRTASSGLGIGPSTCMMIAERL 323
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
YTQG+ISYPRTE+T YP +FD +GTL NN WG V+ LL EG KP+ G+DAGDHP
Sbjct: 324 YTQGYISYPRTETTHYPENFDLKGTLRIQQNNHEWGAEVKALLNEGIQKPKKGSDAGDHP 383
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PITPMRSATE LG DAWRLYS++ +HF+GT+SPDCKY+
Sbjct: 384 PITPMRSATEAELGHDAWRLYSFITRHFIGTISPDCKYL 422
>gi|291227018|ref|XP_002733487.1| PREDICTED: topoisomerase (DNA) III beta-like [Saccoglossus
kowalevskii]
Length = 3134
Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats.
Identities = 126/222 (56%), Positives = 162/222 (72%), Gaps = 6/222 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELK---LEWERQKLFD 63
+ ++ YGPCQTPTLGFCV R+ +I SFKPE +W L + +GY K L+WER +LFD
Sbjct: 208 STLISYGPCQTPTLGFCVDRHDKIQSFKPETYWVLQTQV--SGYNNKTFSLDWERVRLFD 265
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+VA MF +V EV++IS+K++SK RP LNTV L++VASS LG GP AMQ+AE
Sbjct: 266 KEVAQMFINIVKAANEAEVVNISQKEKSKQRPQALNTVELMRVASSGLGMGPHHAMQIAE 325
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
RLY QG+ISYPRTE++ YP SFD RGTL A++ WG V +LL+EG +KPR G DAGD
Sbjct: 326 RLYIQGYISYPRTETSQYPESFDLRGTLRQQASSSDWGSEVRQLLSEGISKPRKGNDAGD 385
Query: 184 HPPITPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCKYI 224
HPPITPM+ A+E L G D WRLY Y+ +HF+ T+SP+CKY+
Sbjct: 386 HPPITPMKGASESELGGGDNWRLYDYITRHFIATISPECKYL 427
>gi|291406914|ref|XP_002719771.1| PREDICTED: topoisomerase (DNA) III beta [Oryctolagus cuniculus]
Length = 863
Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/217 (58%), Positives = 161/217 (74%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + V L L+W+R ++FD ++A
Sbjct: 212 LISFGPCQTPTLGFCVERHDKIQSFKPEAYWVLQAKVNVDKDRSLLLDWDRVRVFDREIA 271
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + Q++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 272 QMFLNMTKQEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 331
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 332 QGYISYPRTETTHYPENFDLKGCLRQQANHPYWADTVKRLLAEGVNRPRKGHDAGDHPPI 391
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 392 TPMRSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 428
>gi|159478116|ref|XP_001697150.1| hypothetical protein CHLREDRAFT_138607 [Chlamydomonas reinhardtii]
gi|158274624|gb|EDP00405.1| predicted protein [Chlamydomonas reinhardtii]
Length = 644
Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/216 (58%), Positives = 159/216 (73%), Gaps = 1/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCV+R+ ITSF+PE FW + P + G L+LEWER ++FD DV
Sbjct: 214 VISYGPCQTPTLNFCVERHQAITSFQPEPFWAVRPRASKAGVPLELEWERGRVFDQDVGG 273
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M+ LV + L V+D+ EK++ K RP GLNTV LLK AS++LG GP AMQ+AERLYT
Sbjct: 274 MYAALVRDAKRLRVVDVGEKEDRKSRPHGLNTVELLKYASASLGLGPAHAMQVAERLYTS 333
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G++SYPRTES+AYP +FD G ++AL N+PV+G Y LL +G P+ GTD GDHPPIT
Sbjct: 334 GYLSYPRTESSAYPPNFDINGNVAALRNHPVFGGYASALLQQGIKHPQGGTDVGDHPPIT 393
Query: 189 PMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCKY 223
P+RSATE L G DAWR+Y YV +HFLG+VSPD Y
Sbjct: 394 PVRSATETELGGGDAWRVYDYVARHFLGSVSPDAVY 429
>gi|348585379|ref|XP_003478449.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cavia porcellus]
Length = 862
Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 161/217 (74%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + V+ L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNVEKDKSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASSALG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V++LL EG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGCLRQQANHPYWADTVKQLLTEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATED LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRSATEDELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|351706851|gb|EHB09770.1| DNA topoisomerase 3-beta-1 [Heterocephalus glaber]
Length = 862
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDKSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASSALG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V++LL EG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKQLLTEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATED LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRSATEDELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|302830151|ref|XP_002946642.1| hypothetical protein VOLCADRAFT_79203 [Volvox carteri f.
nagariensis]
gi|300268388|gb|EFJ52569.1| hypothetical protein VOLCADRAFT_79203 [Volvox carteri f.
nagariensis]
Length = 896
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 163/216 (75%), Gaps = 1/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCV+R+ I SF+PE FW++ P + G L+LEW++ ++FD DV
Sbjct: 212 VISYGPCQTPTLNFCVERHQAIVSFQPEPFWSVRPRASKAGTPLELEWDKGRVFDQDVGA 271
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+F LV + + L V+D+ EK++ K RP GLNTV LLKVAS++LG GP AMQ+AERLYT
Sbjct: 272 LFASLVREAKRLRVVDVVEKEDRKQRPHGLNTVELLKVASASLGMGPAHAMQIAERLYTA 331
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G++SYPRTES+AYP +FD GT++AL N+PV+G Y LL +G P+ GTD GDHPPIT
Sbjct: 332 GYLSYPRTESSAYPPNFDITGTVAALRNHPVFGGYASALLQQGVKHPQGGTDVGDHPPIT 391
Query: 189 PMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCKY 223
P+R+ATED L G DAWR+Y +V +HFLG+VSPD Y
Sbjct: 392 PVRAATEDDLGGGDAWRVYDFVTRHFLGSVSPDAVY 427
>gi|148665015|gb|EDK97431.1| topoisomerase (DNA) III beta, isoform CRA_b [Mus musculus]
Length = 469
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + E L L+W+R ++FD+++A
Sbjct: 216 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIA 275
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ V S K+++K RP LNTV +L+VASSALG GPQ AMQ+AERLYT
Sbjct: 276 QMFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYT 335
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 336 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPI 395
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 396 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 432
>gi|354481406|ref|XP_003502892.1| PREDICTED: DNA topoisomerase 3-beta-1 [Cricetulus griseus]
gi|344253468|gb|EGW09572.1| DNA topoisomerase 3-beta-1 [Cricetulus griseus]
Length = 862
Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 162/217 (74%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFK E +W L + N E L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKSETYWVLQAKVHNNKEESLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASSALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKTKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|395862158|ref|XP_003803330.1| PREDICTED: DNA topoisomerase 3-beta-1 [Otolemur garnettii]
Length = 862
Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF L ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNLTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG DAWRLY Y+ +HF+ TVS DC+Y+
Sbjct: 391 TPMRSATEAELGGDAWRLYEYITRHFIATVSHDCRYL 427
>gi|296191436|ref|XP_002743624.1| PREDICTED: DNA topoisomerase 3-beta-1 [Callithrix jacchus]
Length = 862
Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGALRQQANHPYWADMVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|119579893|gb|EAW59489.1| topoisomerase (DNA) III beta, isoform CRA_b [Homo sapiens]
Length = 516
Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 75 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 134
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 135 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 194
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 195 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 254
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 255 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 291
>gi|296478358|tpg|DAA20473.1| TPA: topoisomerase (DNA) III beta [Bos taurus]
Length = 734
Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + V L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVDVDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASSALG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP SFD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG +AWRLY Y+ +HF+ TVS DC+Y+
Sbjct: 391 TPMKSATEAELGGEAWRLYEYITRHFIATVSHDCRYL 427
>gi|6755851|ref|NP_035754.1| DNA topoisomerase 3-beta-1 [Mus musculus]
gi|6686042|sp|Q9Z321.1|TOP3B_MOUSE RecName: Full=DNA topoisomerase 3-beta-1; AltName: Full=DNA
topoisomerase III beta-1
gi|3868800|dbj|BAA34227.1| topoisomerase III beta [Mus musculus]
gi|21594767|gb|AAH31723.1| Topoisomerase (DNA) III beta [Mus musculus]
gi|74138777|dbj|BAE27200.1| unnamed protein product [Mus musculus]
gi|74194881|dbj|BAE26026.1| unnamed protein product [Mus musculus]
gi|148665016|gb|EDK97432.1| topoisomerase (DNA) III beta, isoform CRA_c [Mus musculus]
Length = 862
Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + E L L+W+R ++FD+++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ V S K+++K RP LNTV +L+VASSALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|148665014|gb|EDK97430.1| topoisomerase (DNA) III beta, isoform CRA_a [Mus musculus]
Length = 867
Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + E L L+W+R ++FD+++A
Sbjct: 216 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIA 275
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ V S K+++K RP LNTV +L+VASSALG GPQ AMQ+AERLYT
Sbjct: 276 QMFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYT 335
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 336 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPI 395
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 396 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 432
>gi|440895796|gb|ELR47898.1| DNA topoisomerase 3-beta-1, partial [Bos grunniens mutus]
Length = 816
Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + V L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVDVDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASSALG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP SFD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG +AWRLY Y+ +HF+ TVS DC+Y+
Sbjct: 391 TPMKSATEAELGGEAWRLYEYITRHFIATVSHDCRYL 427
>gi|332000010|ref|NP_001193635.1| DNA topoisomerase 3-beta-1 [Bos taurus]
Length = 861
Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + V L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVDVDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASSALG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP SFD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG +AWRLY Y+ +HF+ TVS DC+Y+
Sbjct: 391 TPMKSATEAELGGEAWRLYEYITRHFIATVSHDCRYL 427
>gi|355570227|gb|EHH25612.1| hypothetical protein EGK_21503 [Macaca mulatta]
Length = 862
Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|402883653|ref|XP_003905324.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Papio anubis]
gi|402883655|ref|XP_003905325.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Papio anubis]
Length = 862
Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|397472510|ref|XP_003807785.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Pan paniscus]
gi|397472512|ref|XP_003807786.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pan paniscus]
Length = 862
Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|4507635|ref|NP_003926.1| DNA topoisomerase 3-beta-1 [Homo sapiens]
gi|6686033|sp|O95985.1|TOP3B_HUMAN RecName: Full=DNA topoisomerase 3-beta-1; AltName: Full=DNA
topoisomerase III beta-1
gi|4768877|gb|AAD29670.1|AF125216_1 DNA topoisomerase III beta [Homo sapiens]
gi|4102879|gb|AAD01614.1| DNA topoisomerase III beta [Homo sapiens]
gi|4321652|gb|AAD15791.1| DNA topoisomerase III beta [Homo sapiens]
gi|47678723|emb|CAG30482.1| TOP3B [Homo sapiens]
gi|109451532|emb|CAK54627.1| TOP3B [synthetic construct]
gi|109452128|emb|CAK54926.1| TOP3B [synthetic construct]
gi|119579891|gb|EAW59487.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579892|gb|EAW59488.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579894|gb|EAW59490.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579895|gb|EAW59491.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|208965626|dbj|BAG72827.1| topoisomerase (DNA) III beta [synthetic construct]
Length = 862
Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|332859251|ref|XP_515006.3| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pan troglodytes]
gi|332859253|ref|XP_003317172.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Pan troglodytes]
gi|410207778|gb|JAA01108.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410256630|gb|JAA16282.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410290228|gb|JAA23714.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410350957|gb|JAA42082.1| topoisomerase (DNA) III beta [Pan troglodytes]
Length = 862
Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|380787141|gb|AFE65446.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
Length = 862
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|158255430|dbj|BAF83686.1| unnamed protein product [Homo sapiens]
Length = 862
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|388454142|ref|NP_001253336.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
gi|355784822|gb|EHH65673.1| hypothetical protein EGM_02484 [Macaca fascicularis]
gi|383412047|gb|AFH29237.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
Length = 862
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|157786738|ref|NP_001099331.1| DNA topoisomerase 3-beta-1 [Rattus norvegicus]
gi|149019716|gb|EDL77864.1| topoisomerase (DNA) III beta (predicted) [Rattus norvegicus]
Length = 862
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + E L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ V S+K+++K RP LNTV +L+VASSALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNMTKLEKEAWVEATSKKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQVAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|355725619|gb|AES08614.1| topoisomerase III beta [Mustela putorius furo]
Length = 861
Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + V L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG +AWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRSATEAELGGEAWRLYEYITRHFIATVSYDCKYL 427
>gi|149720154|ref|XP_001493576.1| PREDICTED: DNA topoisomerase 3-beta-1 [Equus caballus]
Length = 862
Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGPLRQQANHPAWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG +AWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYL 427
>gi|326667668|ref|XP_003198651.1| PREDICTED: DNA topoisomerase 3-beta-1 [Danio rerio]
Length = 861
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 118/217 (54%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W + + + L L+W+R ++FD D+
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPEAYWVVQAKVFKGKDSPLTLDWDRVRVFDRDIG 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + + V +++K+++K RP LNTV +L+VASSALG GPQ MQ+AERLYT
Sbjct: 271 QMFVNMAKTAKEARVDSVTKKEKAKQRPLALNTVEMLRVASSALGMGPQHTMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +GTL AN+ WG+ V+ LL+EG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGTLKQQANSTFWGETVKALLSEGINRPRKGADAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMR+A+E+ LG D WRLY Y+ +HF+ TVSPDCKY+
Sbjct: 391 TPMRAASENELGSDGWRLYDYITRHFIATVSPDCKYL 427
>gi|301792373|ref|XP_002931153.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Ailuropoda melanoleuca]
Length = 862
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + V L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG +AWRLY Y+ +HF+ TVS DC+Y+
Sbjct: 391 TPMRSATEAELGSEAWRLYEYITRHFIATVSYDCRYL 427
>gi|335301482|ref|XP_003359220.1| PREDICTED: DNA topoisomerase 3-beta-1 [Sus scrofa]
Length = 859
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDQDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S+K+++K RP LNTV +L+VASSALG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKPEKEAQVEATSKKEKTKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP SFD +G L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKQLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG +AWRLY Y+ +HF+ TVS DC+Y+
Sbjct: 391 TPMRSATEAELGGEAWRLYEYITRHFIATVSHDCRYL 427
>gi|432094881|gb|ELK26289.1| DNA topoisomerase 3-beta-1 [Myotis davidii]
Length = 836
Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 161/217 (74%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + V L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S+K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSKKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGALRQQANHPYWADTVKQLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG +AWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYL 427
>gi|8918930|dbj|BAA97984.1| unnamed protein product [Mus musculus]
Length = 464
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 162/217 (74%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + E L L+W+R ++FD+++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ V S K+++K RP LNTV +L+VASSALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V++LLAEG +P G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPWKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|281337636|gb|EFB13220.1| hypothetical protein PANDA_021957 [Ailuropoda melanoleuca]
Length = 839
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + V L L+W+R ++FD ++A
Sbjct: 188 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIA 247
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 248 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 307
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 308 QGYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 367
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG +AWRLY Y+ +HF+ TVS DC+Y+
Sbjct: 368 TPMRSATEAELGSEAWRLYEYITRHFIATVSYDCRYL 404
>gi|426247933|ref|XP_004017724.1| PREDICTED: DNA topoisomerase 3-beta-1 [Ovis aries]
Length = 709
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + L L+W+R ++FD +VA
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVRSSCLRSLLLDWDRVRVFDREVA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + + +V S K+++K RP LNTV +L+VASSALG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTRLEEEAQVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP SFD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPESFDLKGPLRQQANHPYWADTVKRLLAEGLNRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG +AWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGEAWRLYEYITRHFIATVSHDCKYL 427
>gi|73995957|ref|XP_534771.2| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Canis lupus
familiaris]
Length = 862
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG +AWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYL 427
>gi|12803239|gb|AAH02432.1| Topoisomerase (DNA) III beta [Homo sapiens]
Length = 862
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 122/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W + V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWANTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|297716768|ref|XP_002834672.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pongo abelii]
gi|297716770|ref|XP_002834673.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 3 [Pongo abelii]
Length = 862
Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 122/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKQLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|441620017|ref|XP_004088632.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-beta-1
[Nomascus leucogenys]
Length = 803
Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 122/217 (56%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 167 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 226
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 227 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 286
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 287 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 346
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRL Y+ +HF+ TVS DCKY+
Sbjct: 347 TPMKSATEAELGGDAWRLXEYITRHFIATVSHDCKYL 383
>gi|327280844|ref|XP_003225161.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 1 [Anolis
carolinensis]
Length = 862
Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPEMYWVLQAKVSHEKDSCLTLDWDRVRIFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + + +V +S K++SK RP LNTV +L+VAS+ALG GPQ AMQ+AERLYT
Sbjct: 271 QLFLNITKAVKDAKVESVSRKEKSKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L ANNP W + V+ LLAEG KPR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANNPYWAETVKALLAEGINKPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMR+A+E LG D WRL+ Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRAASEAELGGDGWRLFEYITRHFIATVSADCKYL 427
>gi|327280846|ref|XP_003225162.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Anolis
carolinensis]
Length = 851
Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 200 LISFGPCQTPTLGFCVERHDKIQSFKPEMYWVLQAKVSHEKDSCLTLDWDRVRIFDREIA 259
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + + +V +S K++SK RP LNTV +L+VAS+ALG GPQ AMQ+AERLYT
Sbjct: 260 QLFLNITKAVKDAKVESVSRKEKSKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYT 319
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L ANNP W + V+ LLAEG KPR G DAGDHPPI
Sbjct: 320 QGYISYPRTETTHYPENFDLKGSLRQQANNPYWAETVKALLAEGINKPRKGHDAGDHPPI 379
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMR+A+E LG D WRL+ Y+ +HF+ TVS DCKY+
Sbjct: 380 TPMRAASEAELGGDGWRLFEYITRHFIATVSADCKYL 416
>gi|449281995|gb|EMC88926.1| DNA topoisomerase 3-beta-1 [Columba livia]
Length = 862
Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + + +V +S+K++ K RP LNTV +L+VAS+ALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNITKTAKEAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L ANNP W + V+ LL+EG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKALLSEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMR+ATE LG D WRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRAATEAELGGDGWRLYEYITRHFIATVSADCKYL 427
>gi|410977257|ref|XP_003995024.1| PREDICTED: DNA topoisomerase 3-beta-1 [Felis catus]
Length = 862
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 122/217 (56%), Positives = 158/217 (72%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V+RLL EG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLLTEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG +AWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYL 427
>gi|344295392|ref|XP_003419396.1| PREDICTED: DNA topoisomerase 3-beta-1 [Loxodonta africana]
Length = 862
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 121/217 (55%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDRTLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNITKMEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKQLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM++ATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKAATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>gi|156393418|ref|XP_001636325.1| predicted protein [Nematostella vectensis]
gi|156223427|gb|EDO44262.1| predicted protein [Nematostella vectensis]
Length = 856
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 118/219 (53%), Positives = 159/219 (72%), Gaps = 1/219 (0%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWERQKLFDFD 65
+ ++ YGPCQTPTLGFCV+R+ QI SFKPE +W + P +V + G + L+W+R ++FD +
Sbjct: 207 SALISYGPCQTPTLGFCVERHDQIQSFKPEAYWVIKPKVVHSSGQSVVLDWDRVRVFDKE 266
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+A +FQK + + +V IS+ Q++K RP LNTV +L++ASS LG GPQ MQ+AERL
Sbjct: 267 IALVFQKTIKESSNAQVTCISKTQKTKQRPQALNTVEMLRLASSGLGMGPQHTMQIAERL 326
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
YTQG+ISYPRTE+T YP +FD +G L + + +WG +V LL KPR G DAGDHP
Sbjct: 327 YTQGYISYPRTETTHYPENFDLKGALKQQSGSAMWGSHVRELLDGAMTKPRKGHDAGDHP 386
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PITPMR A+E LG D WRLY ++ +HFL T+SPDCKY+
Sbjct: 387 PITPMRCASESELGGDPWRLYDFITRHFLATLSPDCKYL 425
>gi|326929518|ref|XP_003210910.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Meleagris gallopavo]
Length = 862
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + R +V +S+K++ K RP LNTV +L+VAS+ALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNITKTAREAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L ANNP W + V+ LL+EG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKALLSEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM++ATE LG D WRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKAATEVELGGDGWRLYEYITRHFIATVSADCKYL 427
>gi|449477313|ref|XP_002199057.2| PREDICTED: DNA topoisomerase 3-beta-1 [Taeniopygia guttata]
Length = 1002
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 121/217 (55%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + L L+W+R ++FD +VA
Sbjct: 351 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRVFDREVA 410
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + + +V +S+K++ K RP LNTV +L+VAS+ALG GPQ AMQ+AERLYT
Sbjct: 411 QMFLNITKMAKEAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYT 470
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L ANNP W + V+ LL+EG +PR G DAGDHPPI
Sbjct: 471 QGYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKVLLSEGINRPRKGHDAGDHPPI 530
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMR+ATE LG D WRLY Y+ +HF+ TVS DCKY+
Sbjct: 531 TPMRAATEAELGGDGWRLYEYITRHFIATVSADCKYL 567
>gi|57525152|ref|NP_001006181.1| DNA topoisomerase 3-beta-1 [Gallus gallus]
gi|53132094|emb|CAG31872.1| hypothetical protein RCJMB04_12m15 [Gallus gallus]
gi|66796187|dbj|BAD99111.1| topoisomerase III beta [Gallus gallus]
Length = 862
Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 119/217 (54%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + + +V +S+K++ K RP LNTV +L+VAS+ALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNITKMAKEAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L ANNP W + V+ LL+EG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKALLSEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM++ATE LG D+WRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKAATEVELGGDSWRLYEYITRHFIATVSADCKYL 427
>gi|405959918|gb|EKC25894.1| DNA topoisomerase 3-beta-1 [Crassostrea gigas]
Length = 851
Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 119/218 (54%), Positives = 156/218 (71%), Gaps = 4/218 (1%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+ ++ YGPCQTPTLG CV R+ +I SFKPE +W P G + ++W+R ++FD +V
Sbjct: 208 STLISYGPCQTPTLGLCVDRHDKIQSFKPEPYWLALP----EGRTVDIDWDRIRVFDKEV 263
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A MF ++ V+ +++ +SK RP LNTV +L+ ASS LG GPQ AMQ+AERLY
Sbjct: 264 AQMFVNMIKSSDSARVLKVTQDVKSKARPQALNTVEMLRAASSGLGMGPQHAMQMAERLY 323
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
QG+ISYPRTE+T YP +FD GTL A++ +WGDYV+ LL EG KP+ GTD GDHPP
Sbjct: 324 IQGYISYPRTETTQYPENFDLVGTLRQQASSSMWGDYVQNLLREGIQKPKKGTDVGDHPP 383
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITPMR ATE LG DAWRLY ++ +HF+GT+SPDCKY+
Sbjct: 384 ITPMRPATEAELGHDAWRLYDFITRHFIGTISPDCKYL 421
>gi|417405013|gb|JAA49232.1| Putative dna topoisomerase iii alpha [Desmodus rotundus]
Length = 862
Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 121/217 (55%), Positives = 158/217 (72%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDRIQSFKPETYWVLQAKVNADKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W + V+RLL EG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGPLRQQANHPYWAETVKRLLVEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG +AWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRSATEAELGSEAWRLYEYITRHFIATVSYDCKYL 427
>gi|395517223|ref|XP_003762778.1| PREDICTED: DNA topoisomerase 3-beta-1 [Sarcophilus harrisii]
Length = 801
Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 161/217 (74%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG-YELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + + L+W+R ++FD ++A
Sbjct: 150 LISFGPCQTPTLGFCVERHDKIQSFKPELYWVLQAKINPDKESSVLLDWDRVRVFDREIA 209
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ+AERLYT
Sbjct: 210 QMFLNITRTEKEAKVEGTSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQIAERLYT 269
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W V++LLA+G +PR G DAGDHPPI
Sbjct: 270 QGYISYPRTETTHYPENFDLKGSLKQQANHPYWAQTVKQLLADGINRPRKGHDAGDHPPI 329
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 330 TPMRSATEAELGGDAWRLYEYITRHFIATVSYDCKYL 366
>gi|348543165|ref|XP_003459054.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Oreochromis
niloticus]
Length = 856
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 122/218 (55%), Positives = 159/218 (72%), Gaps = 3/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE--LKLEWERQKLFDFDV 66
++ +GPCQTPTLGFCV+R+ +I SFKPE +W + + + G E L L+W R ++FD +V
Sbjct: 209 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVIQTKVFK-GKESPLTLDWNRVRVFDREV 267
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
MF L R +V +S+K+++K RP LNTV +L+VASSALG GPQ MQ+AERLY
Sbjct: 268 GQMFVNLAKTSREAQVELVSKKEKTKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLY 327
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+T YP +FD +GTL NNP W + V+ LL+ G +PR GTDAGDHPP
Sbjct: 328 TQGYISYPRTETTHYPVNFDLKGTLKQQTNNPFWAEEVKVLLSTGINQPRKGTDAGDHPP 387
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITPM +ATE LG D+WRLY Y+ +HF+ TVS DCKY+
Sbjct: 388 ITPMCAATEAELGSDSWRLYEYITRHFIATVSQDCKYL 425
>gi|291190792|ref|NP_001167403.1| DNA topoisomerase 3-beta-1 [Salmo salar]
gi|223648214|gb|ACN10865.1| DNA topoisomerase 3-beta-1 [Salmo salar]
Length = 857
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 119/218 (54%), Positives = 158/218 (72%), Gaps = 3/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE--LKLEWERQKLFDFDV 66
++ +GPCQTPTLGFCV+R+ +I SFKPE +W + + + G E L L+W+R ++FD +V
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVIQAKVFK-GKESPLTLDWDRVRVFDREV 269
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
MF + R +V +S+K+++K RP LNTV +L+VASS+LG GPQ MQ+AERLY
Sbjct: 270 GQMFVNMTKTSREAKVESVSKKEKAKQRPLALNTVEMLRVASSSLGMGPQHTMQIAERLY 329
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+ Y +FD +GTL ANNP W V+ LL+EG +PR G DAGDHPP
Sbjct: 330 TQGYISYPRTETNHYHDNFDLKGTLRQQANNPFWAQEVKALLSEGLNRPRKGADAGDHPP 389
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITPMR+A+E LG D WRLY Y+ +HF+ TVS DCKY+
Sbjct: 390 ITPMRAASEGELGSDGWRLYEYIVRHFIATVSQDCKYL 427
>gi|255073139|ref|XP_002500244.1| predicted protein [Micromonas sp. RCC299]
gi|226515506|gb|ACO61502.1| predicted protein [Micromonas sp. RCC299]
Length = 861
Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/219 (56%), Positives = 153/219 (69%), Gaps = 3/219 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN--GYELKLEWERQKLFDFDV 66
++ YGPCQTPTL F VQR+L+I S PE FW+LH + G L WER+++FD DV
Sbjct: 208 VISYGPCQTPTLNFAVQRHLEIVSHTPEDFWSLHVEVRSTSLGKTLVTRWERERVFDGDV 267
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
MF+ +V DR V + E +E K RP GLNTV+LLK AS+ +G G AMQ+AERLY
Sbjct: 268 GEMFRSMVAGDRHALVESVEETEEFKRRPPGLNTVDLLKAASAGMGMGAHRAMQVAERLY 327
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
QGFISYPRTESTAYP FD +GTL A +P WG++VE LLA KPR G D GDHPP
Sbjct: 328 IQGFISYPRTESTAYPPGFDLKGTLKAQRGHPDWGEWVEELLAGSMTKPRGGKDEGDHPP 387
Query: 187 ITPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITP+RSATE + G +AWRLY +V +HF+ +VSPDC Y+
Sbjct: 388 ITPVRSATESAVGGGEAWRLYDFVARHFIASVSPDCAYV 426
>gi|348543167|ref|XP_003459055.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Oreochromis
niloticus]
Length = 858
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 120/219 (54%), Positives = 158/219 (72%), Gaps = 3/219 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL---VQNGYELKLEWERQKLFDFD 65
++ +GPCQTPTLGFCV+R+ +I SFKPE +W + + ++ L L+W R ++FD +
Sbjct: 209 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVIQTKVNHDLRKESPLTLDWNRVRVFDRE 268
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
V MF L R +V +S+K+++K RP LNTV +L+VASSALG GPQ MQ+AERL
Sbjct: 269 VGQMFVNLAKTSREAQVELVSKKEKTKQRPQALNTVEMLRVASSALGMGPQHTMQIAERL 328
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
YTQG+ISYPRTE+T YP +FD +GTL NNP W + V+ LL+ G +PR GTDAGDHP
Sbjct: 329 YTQGYISYPRTETTHYPVNFDLKGTLKQQTNNPFWAEEVKVLLSTGINQPRKGTDAGDHP 388
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PITPM +ATE LG D+WRLY Y+ +HF+ TVS DCKY+
Sbjct: 389 PITPMCAATEAELGSDSWRLYEYITRHFIATVSQDCKYL 427
>gi|260805074|ref|XP_002597412.1| hypothetical protein BRAFLDRAFT_80591 [Branchiostoma floridae]
gi|229282677|gb|EEN53424.1| hypothetical protein BRAFLDRAFT_80591 [Branchiostoma floridae]
Length = 858
Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 119/217 (54%), Positives = 155/217 (71%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV R+ QI SFKPE +W + + +N L L+W+R +LFD +VA
Sbjct: 210 LISFGPCQTPTLGFCVDRHDQIQSFKPETYWVIQTQVSGKNNSPLWLDWDRVRLFDREVA 269
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
F +V + +V+ +++K+++K RP LNTV LL+VASS+LG PQ MQ+AERLYT
Sbjct: 270 QTFLNIVKGAKEAKVVSVTKKEKAKQRPIALNTVELLRVASSSLGMAPQHTMQVAERLYT 329
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +GTL N WG V LL +G KPR G+DAGDHPPI
Sbjct: 330 QGYISYPRTETTHYPENFDLKGTLRQQTGNSSWGPIVRELLDKGMQKPRKGSDAGDHPPI 389
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG + WR+Y Y+ HF+ TVS DCKY+
Sbjct: 390 TPMRSATESELGGEGWRVYEYITSHFIATVSKDCKYL 426
>gi|126324756|ref|XP_001363870.1| PREDICTED: DNA topoisomerase 3-beta-1 [Monodelphis domestica]
Length = 862
Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 119/217 (54%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPELYWVLQAKINPDKDSSVLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ+AERLYT
Sbjct: 271 HMFLNITRMEKEAKVEGTSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W V++LLA+ +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWAQTVKQLLADSINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMRSATEAELGGDAWRLYEYITRHFIATVSYDCKYL 427
>gi|157871822|ref|XP_001684460.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
gi|68127529|emb|CAJ05541.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
Length = 866
Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 158/217 (72%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+ +I +FKPE FW L P + G L+ EW+R +LFD +A
Sbjct: 202 VISYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVASRGGALLQFEWDRGRLFDETMAR 261
Query: 69 M-FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ Q++ ++ V+++S +++ RP GLNTV+L+K+AS ALG GP M +AE LY
Sbjct: 262 LILQRITKNGKVATVVNVSVSNDTRPRPTGLNTVDLMKIASRALGIGPHYVMSIAENLYI 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
+G+ISYPRTESTAYPSSF+ GTL+ N+ +WG YV LL +G+A+P++G DAGDHPPI
Sbjct: 322 RGYISYPRTESTAYPSSFNLAGTLAQQKNHSMWGAYVTTLLQQGHARPKAGKDAGDHPPI 381
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSA+ L D WR++ Y+ +HF+ +VSPDC+ I
Sbjct: 382 TPMRSASPGELSGDEWRIFEYITRHFIASVSPDCRLI 418
>gi|91081101|ref|XP_975504.1| PREDICTED: similar to prokaryotic DNA topoisomerase [Tribolium
castaneum]
gi|270005298|gb|EFA01746.1| hypothetical protein TcasGA2_TC007344 [Tribolium castaneum]
Length = 852
Score = 258 bits (660), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 159/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ QI +FKPE +W + +V ++G ++ L+W+R + FD +VA
Sbjct: 210 LISYGPCQTPTLGFCVQRHDQIQTFKPEAYWVIKATIVTKDGNDVHLDWKRVRCFDKEVA 269
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + + + +V+++S K+++K RP LNTV L++VASS LG GP AMQ+AE+LYT
Sbjct: 270 NMFLQQIKDQKHAKVLNVSSKEKAKSRPVALNTVELMRVASSGLGMGPHHAMQIAEKLYT 329
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD G L N+ WGD V +L+ G +P+ G DAGDHPPI
Sbjct: 330 QGYISYPRTETTRYPENFDLVGVLRQQQNSTEWGDEVREILSRGVNRPKQGHDAGDHPPI 389
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SAT + D+W+LY Y+ +HF+GT++ DCKY+
Sbjct: 390 TPMKSATRNEFDSDSWKLYDYITRHFIGTLARDCKYL 426
>gi|260101066|gb|ACX31684.1| DNA topoisomerase III beta [Leishmania donovani]
Length = 866
Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 157/217 (72%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+ +I +FKPE FW L P + G L+ EW+R +LFD +A
Sbjct: 202 VISYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVASRGGALLQFEWDRGRLFDETMAR 261
Query: 69 M-FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ Q++ ++ V+++S +++ RP GLNTV+L+K+AS ALG GP M +AE LY
Sbjct: 262 LILQRITKNGKVATVVNVSVSNDTRPRPTGLNTVDLMKIASRALGIGPHYVMSIAENLYI 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
+G+ISYPRTESTAYP SF+ GTL+ N+ +WG YV LL +G+A+P++G DAGDHPPI
Sbjct: 322 RGYISYPRTESTAYPPSFNLAGTLAQQKNHSMWGAYVTALLQQGHARPKAGKDAGDHPPI 381
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSA+ L D WR++ Y+ +HF+ +VSPDC+ I
Sbjct: 382 TPMRSASPGELSGDEWRIFEYITRHFIASVSPDCRLI 418
>gi|384249381|gb|EIE22863.1| prokaryotic type I DNA topoisomerase [Coccomyxa subellipsoidea
C-169]
Length = 866
Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 117/215 (54%), Positives = 155/215 (72%), Gaps = 2/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCVQR+ IT+F+PE +WT+ P + + +EW R +LFD DVA
Sbjct: 209 VISYGPCQTPTLFFCVQRHQLITAFQPEDYWTIRPNCGVCVFRIDVEWSRGRLFDRDVAL 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+FQ++V + R L +++S K+E + RP GLNTV L+K ASSA+G PQ AM+ AE LYT
Sbjct: 269 LFQRIVTEARALRCVEVSAKEERRQRPNGLNTVELMKTASSAMGMSPQQAMRCAEGLYTS 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDAGDHPPI 187
G+ISYPRTESTAYP FDF L + +P+WG+Y L+ G +A P+ G DAGDHPPI
Sbjct: 329 GYISYPRTESTAYPPGFDFHEVLVEMRRHPIWGEYAAGLMGHGAFAPPKGGHDAGDHPPI 388
Query: 188 TPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDC 221
TP+ SATE ++ G D WRLY Y+ +HFLG++SPDC
Sbjct: 389 TPIASATEAELGGGDDWRLYDYIARHFLGSLSPDC 423
>gi|401425068|ref|XP_003877019.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493263|emb|CBZ28548.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 866
Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 156/217 (71%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+ +I +FKPE FW L P + G L+ EW+R +LFD +A
Sbjct: 202 VISYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVATRGGALLQFEWDRGRLFDETMAR 261
Query: 69 M-FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ Q++ ++ V ++S +++ RP GLNTV+L+K+AS ALG GP M +AE LY
Sbjct: 262 LILQRITKNGKVATVANVSVSNDTRPRPTGLNTVDLMKIASRALGIGPHYVMSIAENLYI 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
+G+ISYPRTESTAYP SF+ GTL+ N+ +WG YV LL +G+A+P++G DAGDHPPI
Sbjct: 322 RGYISYPRTESTAYPPSFNLAGTLAQQKNHSMWGAYVTALLQQGHARPKAGKDAGDHPPI 381
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSA+ L D WR++ Y+ +HF+ +VSPDC+ I
Sbjct: 382 TPMRSASPGELSGDEWRIFEYITRHFIASVSPDCRLI 418
>gi|71756135|ref|XP_828982.1| DNA topoisomerase III [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834368|gb|EAN79870.1| DNA topoisomerase III, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|144583730|gb|ABP01567.1| topoisomerase IIIbeta [Trypanosoma brucei brucei]
gi|261334912|emb|CBH17906.1| DNA topoisomerase III, putative [Trypanosoma brucei gambiense
DAL972]
Length = 841
Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 151/214 (70%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCVQR+ +I +FKPE +W L P + G + EW R ++FD +A
Sbjct: 202 VVSYGPCQTPTLAFCVQRHDEILNFKPENYWKLVPTCNRYGSPITFEWARGRVFDELIAR 261
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + V + ++ +V+D+S +++ RP LNTV L+K+AS LG GP AMQ+AE LY
Sbjct: 262 LLHQRVSRSKVAKVVDVSVGADTRARPTALNTVELMKIASKFLGIGPHHAMQIAENLYIS 321
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTESTAYP SFD + L+ +PVWG+YV+ LL Y +P++G DAGDHPPIT
Sbjct: 322 GYISYPRTESTAYPVSFDLKAALATQQGHPVWGEYVQELLKGRYTRPKAGKDAGDHPPIT 381
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PMR+AT L D+WRLY Y+ +HF+ TVSPDCK
Sbjct: 382 PMRAATAGELSSDSWRLYEYITRHFIATVSPDCK 415
>gi|146092141|ref|XP_001470217.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
gi|134085011|emb|CAM69411.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
Length = 867
Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 156/217 (71%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+ +I +FKPE FW L P + G L+ EW+R +LFD +A
Sbjct: 202 VISYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVASRGGALLQFEWDRGRLFDETMAR 261
Query: 69 M-FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ Q++ ++ V+++S +++ RP GLNTV+L+K+AS ALG GP M +AE LY
Sbjct: 262 LILQRITKSGKVATVVNVSVSNDTRPRPTGLNTVDLMKIASRALGIGPHYVMSIAENLYI 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
+G+ISYPRTESTAYP SF+ G L+ N+ +WG YV LL +G+A+P++G DAGDHPPI
Sbjct: 322 RGYISYPRTESTAYPPSFNLAGALAQQKNHSMWGAYVTALLQQGHARPKAGKDAGDHPPI 381
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSA+ L D WR++ Y+ +HF+ +VSPDC+ I
Sbjct: 382 TPMRSASPSELSGDEWRIFEYITRHFIASVSPDCRLI 418
>gi|398018216|ref|XP_003862289.1| DNA topoisomerase III, putative [Leishmania donovani]
gi|322500518|emb|CBZ35595.1| DNA topoisomerase III, putative [Leishmania donovani]
Length = 867
Score = 255 bits (652), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 156/217 (71%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+ +I +FKPE FW L P + G L+ EW+R +LFD +A
Sbjct: 202 VISYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVASRGGALLQFEWDRGRLFDETMAR 261
Query: 69 M-FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ Q++ ++ V+++S +++ RP GLNTV+L+K+AS ALG GP M +AE LY
Sbjct: 262 LILQRITKSGKVATVVNVSVSNDTRPRPTGLNTVDLMKIASRALGIGPHYVMSIAENLYI 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
+G+ISYPRTESTAYP SF+ G L+ N+ +WG YV LL +G+A+P++G DAGDHPPI
Sbjct: 322 RGYISYPRTESTAYPPSFNLAGALAQQKNHSMWGAYVTALLQQGHARPKAGKDAGDHPPI 381
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSA+ L D WR++ Y+ +HF+ +VSPDC+ I
Sbjct: 382 TPMRSASPSELSGDEWRIFEYITRHFIASVSPDCRLI 418
>gi|71664077|ref|XP_819023.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70884306|gb|EAN97172.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 852
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 152/214 (71%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCVQR+ +I +FKPE +W L P + G + +W R ++FD +A
Sbjct: 202 VVSYGPCQTPTLAFCVQRHDEILNFKPENYWKLVPVSNRFGSLMTFDWARGRVFDDLMAR 261
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + V R +V D+S +++ RP LNTV L+KVAS ALG GP AMQ+AE LY
Sbjct: 262 LLHQKVSHHRAAKVTDVSVGVDTRARPTALNTVELMKVASKALGMGPHHAMQIAENLYIG 321
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTESTAYPSSF+F L+A +P+WG+YV+ LLA G+ +P++G DAGDHPPIT
Sbjct: 322 GYISYPRTESTAYPSSFNFMAALTAQERSPIWGNYVQELLAHGHTRPKAGKDAGDHPPIT 381
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PMR AT L D+WRLY Y+ +HF+ ++SPDCK
Sbjct: 382 PMRLATPQELSGDSWRLYEYIARHFIASLSPDCK 415
>gi|401401464|ref|XP_003881018.1| DNA topoisomerase, related [Neospora caninum Liverpool]
gi|325115430|emb|CBZ50985.1| DNA topoisomerase, related [Neospora caninum Liverpool]
Length = 924
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/218 (55%), Positives = 156/218 (71%), Gaps = 2/218 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCVQRY I +F+PE F+TL + EL L+WER ++FD VA
Sbjct: 258 LVSYGPCQTPTLQFCVQRYDDIHAFQPETFYTLDTSIRVGEQELFLDWERGQVFDSVVAH 317
Query: 69 MFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
++ +V Q + V+D+SEK+E RP LNTVN+LK+AS LG GPQ AMQ AERLY
Sbjct: 318 TYKDVVSAQGGVAVVVDVSEKEEKLPRPQALNTVNMLKLASQRLGMGPQQAMQTAERLYL 377
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
G ++YPRTE+ YP SFD RGT +A +NP WG YV+ LL+ G A+PR G DAGDHPPI
Sbjct: 378 SGIVTYPRTETCKYPDSFDLRGTAAAQTSNPYWGGYVKELLSSGLARPRDGVDAGDHPPI 437
Query: 188 TPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TP+RSATE D+ G DAW LY + +HFL ++SPDC+++
Sbjct: 438 TPVRSATEADVGGGDAWALYELITRHFLASISPDCRFL 475
>gi|407420057|gb|EKF38435.1| DNA topoisomerase III, putative [Trypanosoma cruzi marinkellei]
Length = 851
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 153/214 (71%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCVQR+ +I +FKPE +W L P + G + +W R ++FD +A
Sbjct: 202 VVSYGPCQTPTLAFCVQRHDEILNFKPENYWKLVPVSNRFGSLMTFDWVRGRVFDDLMAR 261
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + V R +V+D+S +++ RP LNTV L+KVAS ALG GP AMQ+AE LY
Sbjct: 262 LLHQKVSHHRSAKVVDVSVGVDTRARPTALNTVELMKVASKALGMGPHHAMQVAENLYIG 321
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTESTAYPSSF+F L+A +P+WG+YV+ LLA G+ +P++G DAGDHPPIT
Sbjct: 322 GYISYPRTESTAYPSSFNFMAALAAQERSPIWGNYVQELLARGHTRPKAGKDAGDHPPIT 381
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PMR AT L D+WRLY Y+ +HF+ ++SPDCK
Sbjct: 382 PMRLATPQELSGDSWRLYEYIARHFIASLSPDCK 415
>gi|390351189|ref|XP_795949.3| PREDICTED: DNA topoisomerase 3-beta-1 [Strongylocentrotus
purpuratus]
Length = 954
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 158/219 (72%), Gaps = 2/219 (0%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFDFD 65
+ ++ YGPCQTPTLGFCV R+ +I SFKPE FW + + ++G +L L+W+R ++FD +
Sbjct: 302 STLISYGPCQTPTLGFCVNRHDKIQSFKPEPFWVIQIQVTHESGRKLNLDWDRVRVFDRE 361
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
VA MF ++ + + +S+K+++K RP LNTV L++VASS+LG P AMQ+AERL
Sbjct: 362 VAQMFLNIIKTQKDARITSVSQKEKAKQRPQALNTVELMRVASSSLGMSPHHAMQIAERL 421
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
Y QG+ISYPRTE+T+YP SFD +GTL + P W V+ LL + KPR GTD GDHP
Sbjct: 422 YIQGYISYPRTETTSYPESFDLKGTLRQQMSAP-WRSEVKVLLDGEFTKPRKGTDVGDHP 480
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PITPMR+A E +G +AWRLY Y+ +HF+ TVSPDC+Y+
Sbjct: 481 PITPMRAANESEVGGEAWRLYEYIARHFIATVSPDCRYL 519
>gi|407853208|gb|EKG06290.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 852
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 152/214 (71%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCVQR+ +I +FKPE +W L P + G + +W R ++FD +A
Sbjct: 202 VVSYGPCQTPTLAFCVQRHDEILNFKPENYWKLVPVSNRFGSLMTFDWARGRVFDDLMAR 261
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + V R +V D+S +++ RP LNTV L+KVAS ALG GP AMQ+AE LY
Sbjct: 262 LLHQKVSHHRAAKVTDVSVGVDTRARPTALNTVELMKVASKALGMGPHHAMQIAENLYIG 321
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTESTAYPSSF+F L+A +P+WG+YV+ LLA G+ +P++G DAGDHPPIT
Sbjct: 322 GYISYPRTESTAYPSSFNFMTALTAQERSPIWGNYVQELLARGHTRPKAGKDAGDHPPIT 381
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PMR AT L D+WRLY Y+ +HF+ ++SPDCK
Sbjct: 382 PMRLATPQELSGDSWRLYEYIARHFIASLSPDCK 415
>gi|307203099|gb|EFN82279.1| DNA topoisomerase 3-beta-1 [Harpegnathos saltator]
Length = 851
Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 153/217 (70%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ +I +FKP+ +W L + +G ++ L W R + FD +VA
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTIKCADGQDIILNWSRVRSFDKEVA 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF V + V+ I ++SK RP LNTV L++VASS LG GPQ AMQ+AERLYT
Sbjct: 269 NMFLSHVKEYERATVVSIQSTEKSKSRPIALNTVELMRVASSGLGMGPQHAMQIAERLYT 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T+YP +FD TL NNP WG+ V ++LA G +P+ G DAGDHPPI
Sbjct: 329 QGYISYPRTETTSYPENFDLLSTLKQQQNNPEWGEDVRKILAAGINRPKKGHDAGDHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+ AT + L D+WRLY Y+ +HF+ T++ DCKY+
Sbjct: 389 TPMKHATRNELDGDSWRLYDYITRHFIATLARDCKYL 425
>gi|198435562|ref|XP_002121520.1| PREDICTED: similar to topoisomerase (DNA) III beta, partial [Ciona
intestinalis]
Length = 827
Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 156/218 (71%), Gaps = 2/218 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV--QNGYELKLEWERQKLFDFDV 66
++ YGPCQTPTLGFCV R+ +I SFKPE FW + + NG + LEW R ++F+ V
Sbjct: 183 LISYGPCQTPTLGFCVDRHDKIQSFKPEPFWMIDVSVKCPNNGPSITLEWARGRIFEQPV 242
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A M+ ++ +++I + +I +K+++K RP LNTV +L+VAS++LG GPQ AMQ AE LY
Sbjct: 243 AKMYLSIIKENKIAVIENILKKEKTKQRPQALNTVEMLRVASASLGIGPQQAMQSAEHLY 302
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
T+G+ISYPRTE+T YP +FDFR +LS + WGD LL++G KPR G+DAGDHPP
Sbjct: 303 TRGYISYPRTETTHYPENFDFRSSLSQQTKSRSWGDSASTLLSQGITKPRKGSDAGDHPP 362
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITPM ATE +G D WRLY Y+ +HF+ ++SPDC Y+
Sbjct: 363 ITPMLCATEQEVGHDNWRLYEYIVRHFIASLSPDCTYL 400
>gi|410928142|ref|XP_003977460.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Takifugu rubripes]
Length = 713
Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 153/217 (70%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFK E +W L + + L L+W R ++FD +V
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKAETYWILQAKVFKGKDNPLTLDWSRVRVFDREVG 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF L R +V+ +S+K++ K RP LNTV +L+VAS ALG GPQ MQ+AERLY
Sbjct: 271 QMFINLTKTSREAQVVSVSKKEKVKQRPQALNTVEMLRVASQALGMGPQHTMQIAERLYV 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD + L +N+ +W + V+ LL+ G +PR G+DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKAALKQQSNSSMWAEEVKALLSGGLNRPRKGSDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSA+E LG D WRLY Y+ +HF+ TVS DC+Y+
Sbjct: 391 TPMRSASEAELGSDGWRLYEYITRHFIATVSQDCRYL 427
>gi|307184245|gb|EFN70718.1| DNA topoisomerase 3-beta-1 [Camponotus floridanus]
Length = 851
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 153/217 (70%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ +I +FKP+ +W L + +G ++ L W R + FD +VA
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTIKCSDGQDIVLNWSRVRSFDKEVA 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF V + V+ + ++SK RP LNTV L+++ASS LG GPQ AMQ+AERLYT
Sbjct: 269 NMFLSHVKEHDRATVVSVQSTEKSKSRPIALNTVELMRIASSGLGMGPQHAMQIAERLYT 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T+YP +FD TL N+P WG+ V +++A G +P+ G DAGDHPPI
Sbjct: 329 QGYISYPRTETTSYPENFDLLSTLKQQQNSPDWGEEVRKIVAAGINRPKKGHDAGDHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+ AT + L D+WRLY Y+ +HF+ T++ DCKY+
Sbjct: 389 TPMKHATRNELDGDSWRLYDYITRHFIATLARDCKYM 425
>gi|389601917|ref|XP_001566225.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505240|emb|CAM39725.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 866
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 154/217 (70%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+ +I +FKPE FW L P ++G L+ +W+R ++FD +A
Sbjct: 202 VVSYGPCQTPTLGFCVQRHDEILNFKPENFWRLVPVASRSGAVLQFDWDRGRVFDETMAR 261
Query: 69 M-FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ Q++ ++ V ++S +++ RP GLNTV+L+K+AS ALG GP M +AE LY
Sbjct: 262 LILQRITKNGKVATVTNMSVSSDTRPRPTGLNTVDLMKIASKALGIGPHYVMTIAENLYI 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
+G+ISYPRTESTAYP SF+ G L+ N+P+WG YV LL G+ P++G DAGDHPPI
Sbjct: 322 RGYISYPRTESTAYPPSFNLVGALAQQKNHPIWGGYVTALLQGGHVHPKAGKDAGDHPPI 381
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSA+ L D WR++ Y+ +HF+ +VSPDC+ I
Sbjct: 382 TPMRSASPGELSGDEWRIFEYITRHFIASVSPDCRLI 418
>gi|156551898|ref|XP_001606777.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Nasonia vitripennis]
Length = 852
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 152/217 (70%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ +I +FKP+ +W L + +G ++ L W R + FD +VA
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKTADGLDVVLSWSRVRSFDKEVA 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F V + V I ++SK RP LNTV L++VASS LG GP AMQ+AERLYT
Sbjct: 269 NIFLSHVKEHDHATVTSIQSTEKSKARPIALNTVELMRVASSGLGMGPHHAMQIAERLYT 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T+YP +FD TL N+ WGD V R+L+ G +KP+ G DAGDHPPI
Sbjct: 329 QGYISYPRTETTSYPENFDLVSTLKQQQNSSDWGDEVRRILSSGISKPKKGHDAGDHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SA+ + L D+WRLY Y+ +HF+ T++ DCKY+
Sbjct: 389 TPMKSASRNELDGDSWRLYDYITRHFIATLAKDCKYL 425
>gi|237838573|ref|XP_002368584.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii ME49]
gi|211966248|gb|EEB01444.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii ME49]
Length = 841
Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/218 (54%), Positives = 155/218 (71%), Gaps = 2/218 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCVQRY I +F+PE F+TL + EL LEWER ++FD A
Sbjct: 193 LVSYGPCQTPTLQFCVQRYDDIHAFQPETFYTLDTSIRVGEQELFLEWERGQVFDSVTAH 252
Query: 69 MFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
++ +V + + V+D++EK+E RP LNTVN+LK+AS LG GPQ AMQ AERLY
Sbjct: 253 TYKDIVSARGAVAVVVDVTEKEEKMPRPQALNTVNMLKLASQRLGMGPQQAMQTAERLYL 312
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
G ++YPRTE+ YP SFD RGT +A A+NP WG YV+ LL+ G A+PR G DAGDHPPI
Sbjct: 313 SGKVTYPRTETCKYPESFDLRGTAAAQASNPYWGGYVKELLSSGLARPRDGVDAGDHPPI 372
Query: 188 TPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TP+ SATE D+ G DAW LY + +HFL ++SPDC+++
Sbjct: 373 TPVCSATEADVGGGDAWALYELITRHFLASISPDCRFL 410
>gi|358334208|dbj|GAA52642.1| DNA topoisomerase III [Clonorchis sinensis]
Length = 887
Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 147/216 (68%), Gaps = 1/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE FW + L V+ G + L W R +LFD + A
Sbjct: 104 LVSFGPCQTPTLGFCVKRHDRIQSFKPESFWRIKASLSVKGGATMDLVWTRDRLFDKEAA 163
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F V EV+ ++ K++ K RP GLNTV +L+VAS+ LG GP AM +AERLYT
Sbjct: 164 MVFLTKVKSCCTAEVMQVTTKEKVKPRPQGLNTVEMLRVASACLGIGPHAAMAVAERLYT 223
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
G+I+YPRTE+T YPS+FD RG + A +P WGD LLA G PR G DAGDHPPI
Sbjct: 224 SGYINYPRTETTTYPSTFDLRGLVQQQAKHPQWGDVARDLLASGLTPPRKGHDAGDHPPI 283
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMR AT LG DA RLY ++ QHFL TV PDC+Y
Sbjct: 284 APMRMATPGELGHDAARLYEFIAQHFLATVMPDCRY 319
>gi|342186003|emb|CCC95488.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 838
Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 151/214 (70%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCVQR+ +I +FKPE +W L P + G + EW R ++FD +A
Sbjct: 202 VVSYGPCQTPTLAFCVQRHDEILNFKPENYWKLVPTTNRFGAPVTFEWVRGRVFDELIAR 261
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + R +VID+S +++ RP LNTV L+KVAS LG GP AMQLAE LY
Sbjct: 262 LIHQRLSRLRTAKVIDVSVAPDTRARPVALNTVELMKVASKLLGIGPHHAMQLAENLYIA 321
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTESTAYP+SFD RG L+ +P+WGD+V+ LL + +P++G DAGDHPPIT
Sbjct: 322 GYISYPRTESTAYPASFDLRGALATQERHPLWGDHVQGLLKGRHTRPKAGKDAGDHPPIT 381
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PMR+AT + ++W+LY Y+ +HF+ TVS DCK
Sbjct: 382 PMRAATASDMSSESWKLYEYITRHFIATVSSDCK 415
>gi|444732291|gb|ELW72593.1| DNA topoisomerase 3-beta-1 [Tupaia chinensis]
Length = 946
Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 125/252 (49%), Positives = 160/252 (63%), Gaps = 36/252 (14%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 260 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNADKDRSLLLDWDRVRVFDREIA 319
Query: 68 TMFQKLVMQDR---------------------------ILEVIDISEKQESKVRPCGLNT 100
MF L ++ + +V S K+++K RP LNT
Sbjct: 320 QMFLNLTKSEKEAQVRLPRRAFFGVGTGLGDLCLEEQLVPKVEAASRKEKAKQRPLALNT 379
Query: 101 VNLLKVASSALGYGPQMAMQLAERLYTQG--------FISYPRTESTAYPSSFDFRGTLS 152
V +L+VASSALG GPQ AMQ AERLYTQG +ISYPRTE+T YP +FD + +L
Sbjct: 380 VEMLRVASSALGMGPQHAMQTAERLYTQGGPTTHTQGYISYPRTETTHYPENFDLKASLR 439
Query: 153 ALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQH 212
AN+P W D V+RLLAEG +PR G DAGDHPPITPMRSATE LG DAWRLY Y+ +H
Sbjct: 440 QQANHPHWADTVKRLLAEGINRPRKGHDAGDHPPITPMRSATEAELGGDAWRLYEYITRH 499
Query: 213 FLGTVSPDCKYI 224
F+ TVS DCKY+
Sbjct: 500 FIATVSYDCKYL 511
>gi|308805316|ref|XP_003079970.1| myosin class 11-1 (ISS) [Ostreococcus tauri]
gi|116058427|emb|CAL53616.1| myosin class 11-1 (ISS) [Ostreococcus tauri]
Length = 2117
Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 147/219 (67%), Gaps = 4/219 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELKLEWERQKLFDFDV 66
++ YGPCQTPTLGFCVQR+L+I PE +W L G E+ +W R +LFD +
Sbjct: 1793 VVSYGPCQTPTLGFCVQRHLEIVRHVPEPYWVLEALFADADRGEEVAPKWARSRLFDEEA 1852
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A F +LV + +V+ + K E + RP GLNTV +LK AS+ LG G AMQ+AERLY
Sbjct: 1853 ARAFLQLVNDAKTFDVVSVESKAEKRPRPSGLNTVEMLKAASAGLGMGAHRAMQVAERLY 1912
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAK-PRSGTDAGDHP 185
G ISYPRTESTAYPS F + TL ++P WG++V L+ EG PR G DAGDHP
Sbjct: 1913 MAGHISYPRTESTAYPSGFALKETLRIQTSHPTWGEFVRGLVEEGLMTPPRRGVDAGDHP 1972
Query: 186 PITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PITPMR++TE D+ G +AWRLY ++ +HF+ TVSPDC+Y
Sbjct: 1973 PITPMRASTEGDVGGGEAWRLYDFISRHFIATVSPDCEY 2011
>gi|221505540|gb|EEE31185.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii VEG]
Length = 842
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/219 (53%), Positives = 155/219 (70%), Gaps = 3/219 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTL FCVQRY I +F+PE F+T+ + EL LEWER ++FD A
Sbjct: 193 LVSYGPCQTPTLQFCVQRYDDIHAFQPETFYTVCKSVFDLREQELFLEWERGQVFDSVTA 252
Query: 68 TMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
++ +V + + V+D++EK+E RP LNTVN+LK+AS LG GPQ AMQ AERLY
Sbjct: 253 HTYKDIVSARGAVAVVVDVTEKEEKMPRPQALNTVNMLKLASQRLGMGPQQAMQTAERLY 312
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
G ++YPRTE+ YP SFD RGT +A A+NP WG YV+ LL+ G A+PR G DAGDHPP
Sbjct: 313 LSGKVTYPRTETCKYPESFDLRGTAAAQASNPYWGGYVKELLSSGLARPRDGVDAGDHPP 372
Query: 187 ITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
ITP+ SATE D+ G DAW LY + +HFL ++SPDC+++
Sbjct: 373 ITPVCSATEADVGGGDAWALYELITRHFLASISPDCRFL 411
>gi|340722711|ref|XP_003399746.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Bombus terrestris]
Length = 851
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 148/217 (68%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ +I +FKP+ +W L + +G ++ L W R + FD ++A
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKTSDGQDIILSWSRVRSFDKEIA 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF V + VI + +++K RP LNTV L+++ASS LG GP AMQ+AERLYT
Sbjct: 269 NMFLSHVKEYDQATVISVESTEKTKSRPIALNTVELMRIASSGLGMGPHHAMQIAERLYT 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD L NNP WGD V ++LA G +P+ G + GDHPPI
Sbjct: 329 QGYISYPRTETTLYPENFDLLAALKQQQNNPDWGDQVRKILATGINRPKKGLNVGDHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+ AT + L D WRLY Y+ +HF+ T++ DCKY+
Sbjct: 389 TPMKHATRNDLDGDTWRLYDYITRHFIATLAHDCKYL 425
>gi|350424370|ref|XP_003493773.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Bombus impatiens]
Length = 851
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 148/217 (68%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ +I +FKP+ +W L + +G ++ L W R + FD ++A
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKSSDGQDIILSWSRVRSFDKEIA 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF V + VI + +++K RP LNTV L+++ASS LG GP AMQ+AERLYT
Sbjct: 269 NMFLSHVKEYDQATVISVESTEKTKSRPIALNTVELMRIASSGLGMGPHHAMQIAERLYT 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD L NNP WGD V ++LA G +P+ G + GDHPPI
Sbjct: 329 QGYISYPRTETTLYPENFDLLAALKQQQNNPDWGDQVRKILATGINRPKKGLNVGDHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+ AT + L D WRLY Y+ +HF+ T++ DCKY+
Sbjct: 389 TPMKHATRNDLDGDTWRLYDYITRHFIATLAHDCKYL 425
>gi|332027377|gb|EGI67460.1| DNA topoisomerase 3-beta-1 [Acromyrmex echinatior]
Length = 848
Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 151/217 (69%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ +I +FKP+ +W L + +G ++ L W R + FD +VA
Sbjct: 206 LISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKSPDGQDIVLSWSRVRSFDKEVA 265
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+MF V + V+ I ++ K RP LNTV L++VASS LG GPQ AMQ+AERLYT
Sbjct: 266 SMFLSHVKEYDQATVVSIQSTEKCKSRPIALNTVELMRVASSGLGMGPQHAMQIAERLYT 325
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T+YP +FD TL N+ WG+ V +++A G +P+ G DAGDHPPI
Sbjct: 326 QGYISYPRTETTSYPENFDLLSTLKQQQNSSEWGEEVRKIIATGINRPKKGHDAGDHPPI 385
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+ AT + L D WRLY Y+ +HF+ T++ DC+Y+
Sbjct: 386 TPMKHATRNELDGDLWRLYDYITRHFIATLARDCRYL 422
>gi|357611732|gb|EHJ67631.1| putative prokaryotic DNA topoisomerase [Danaus plexippus]
Length = 848
Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 149/217 (68%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ I +FKPE +W L G EL LEW+R + F+ D+A
Sbjct: 210 LISYGPCQTPTLGFCVQRHDDIQTFKPETYWVLRVTASTSEGRELPLEWKRVRSFEKDIA 269
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + + + V++I K++ K RP LNTV L++VAS+ LG GP AMQ+AERLYT
Sbjct: 270 NMFLVGIKEFKEATVVNIQAKEKIKSRPTALNTVELMRVASAGLGMGPHHAMQIAERLYT 329
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T+Y +FD G+L N+ WG V LLA G KP+ G DAGDHPPI
Sbjct: 330 QGYISYPRTETTSYGENFDLIGSLRQQQNSNKWGSEVRALLANGINKPKKGHDAGDHPPI 389
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+ A+E L D WR+Y Y+ +HF+ T+S DC+Y+
Sbjct: 390 TPMKPASESELEGDMWRIYDYITRHFIATLSRDCRYL 426
>gi|383857261|ref|XP_003704123.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Megachile rotundata]
Length = 851
Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 148/217 (68%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ +I +FKP+ +W L + +G ++ L W R + FD ++A
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKSSDGQDIILSWSRVRSFDKEIA 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + + V+ + +++K RP LNTV L++VASS LG GP AMQ+AERLYT
Sbjct: 269 NMFLSHIKEYDQATVLSVESSEKTKSRPIALNTVELMRVASSGLGMGPHHAMQIAERLYT 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD L NNP WGD V ++L G +P+ G +AGDHPPI
Sbjct: 329 QGYISYPRTETTLYPENFDLPAALKQQQNNPDWGDQVRKILMTGINRPKKGHNAGDHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+ AT L D+WRLY Y+ +HF+ T++ DCKY+
Sbjct: 389 TPMKHATRSELDGDSWRLYDYITRHFIATLAADCKYL 425
>gi|66509929|ref|XP_625165.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Apis
mellifera]
Length = 851
Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 147/217 (67%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ +I +FKP+ +W L + +G ++ L W R + FD ++A
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKSSDGQDIILNWTRVRSFDKEIA 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF V + +I + +++K RP LNTV L++VASS LG GP AMQ+AERLYT
Sbjct: 269 NMFLSHVKEYDQATIISVESTEKTKSRPIALNTVELMRVASSGLGMGPHHAMQIAERLYT 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD L NNP WGD V ++L G +P+ G + GDHPPI
Sbjct: 329 QGYISYPRTETTLYPENFDLLAALKQQQNNPDWGDQVRKILTTGINRPKKGCNVGDHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+ AT + L D WRLY Y+ +HF+ T++ DCKY+
Sbjct: 389 TPMKHATRNELDGDTWRLYDYITRHFIATLAHDCKYL 425
>gi|195996011|ref|XP_002107874.1| hypothetical protein TRIADDRAFT_49643 [Trichoplax adhaerens]
gi|190588650|gb|EDV28672.1| hypothetical protein TRIADDRAFT_49643 [Trichoplax adhaerens]
Length = 841
Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 150/215 (69%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ +I SF+PEK+W + + N L+W R ++FD +VA+
Sbjct: 208 LISYGPCQTPTLGFCVERHDKINSFEPEKYWKIDVKVRHNNSTFALQWNRVRIFDKNVAS 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MF + + +++ ++ Q+SK +P LNTV +L+ ASS L GP M LAERLY Q
Sbjct: 268 MFCEDIKAVTRTKILKVTTTQKSKQKPIALNTVEMLRKASSGLNIGPHHTMALAERLYIQ 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+T YP +FDFR L L+++ GD V+ LL +GY+KP+ G DAGDHPPIT
Sbjct: 328 GYISYPRTETTTYPQNFDFRDLLGKLSSHEDLGDTVKSLLKDGYSKPKKGQDAGDHPPIT 387
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ A + L D+WRLY Y+ +H+LG+V DC+Y
Sbjct: 388 PMKVAGRNELSGDSWRLYDYIVRHYLGSVMEDCRY 422
>gi|380025214|ref|XP_003696372.1| PREDICTED: DNA topoisomerase 3-beta-1 [Apis florea]
Length = 851
Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 147/217 (67%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ +I +FKP+ +W L + +G ++ L W R + FD ++A
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQVTVKSSDGQDIILNWTRVRSFDKEIA 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF V + +I + +++K RP LNTV L++VASS LG GP AMQ+AERLYT
Sbjct: 269 NMFLSHVKEYDQATIISVESTEKTKSRPIALNTVELMRVASSGLGMGPHHAMQIAERLYT 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD L NNP WGD V ++L G +P+ G + GDHPPI
Sbjct: 329 QGYISYPRTETTLYPENFDLLAALKQQQNNPDWGDQVRKILTTGINRPKKGCNVGDHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+ AT + L D WRLY Y+ +HF+ T++ DCKY+
Sbjct: 389 TPMKHATRNELDGDTWRLYDYITRHFIATLAHDCKYL 425
>gi|242006813|ref|XP_002424239.1| DNA topoisomerase 3-beta, putative [Pediculus humanus corporis]
gi|212507608|gb|EEB11501.1| DNA topoisomerase 3-beta, putative [Pediculus humanus corporis]
Length = 852
Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 148/217 (68%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ YGPCQ PTLGFCVQR+ +I +FKPE +W L + ++G E LEWER + F+ +VA
Sbjct: 210 LISYGPCQIPTLGFCVQRHDEIQTFKPEPYWVLQMSVKTESGQEATLEWERVRCFEKEVA 269
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF V + + +V ++ KQ + +P LNTV L++ ASS LG GP AMQ+AERLYT
Sbjct: 270 LMFLSQVKEFKEAKVSSVTSKQMTNSKPLALNTVELMRTASSGLGMGPHHAMQIAERLYT 329
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FDF G L ++ WG +V +L EG +KPR G D GDHPPI
Sbjct: 330 QGYISYPRTETTQYPENFDFIGVLRQQQSSSEWGSFVREILNEGISKPRKGKDVGDHPPI 389
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+ A + ++W+LY Y+ +HFL TVS CKY+
Sbjct: 390 TPMKLAKRNDFDAESWKLYDYIVRHFLATVSGPCKYL 426
>gi|268532954|ref|XP_002631605.1| Hypothetical protein CBG20786 [Caenorhabditis briggsae]
Length = 591
Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 145/217 (66%), Gaps = 1/217 (0%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+ ++ YGPCQTPTLGFCV R+ QI FKPE +W L + EW+R ++FD ++
Sbjct: 207 STVISYGPCQTPTLGFCVTRHDQIVQFKPESYWVLKTTFSCDSQTFSPEWQRGRIFDAEI 266
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A +F + + V+D+S+K+ K RPC LNTV L++VASS+LG P M +AE LY
Sbjct: 267 AKLFVDRIKKSHTGVVVDVSKKEARKERPCALNTVELMRVASSSLGLSPSTTMHVAESLY 326
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+TAYP++FD GTL L+ + WG V ++LAEG +P+SG D GDHPP
Sbjct: 327 TQGYISYPRTETTAYPANFDLNGTLKILSGDRKWGSVVSQVLAEGIKRPKSGVDKGDHPP 386
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
ITPMR+ T + G D R+Y YV QHF+ T+ C Y
Sbjct: 387 ITPMRANTGGLSG-DMARIYEYVSQHFVATLMKPCIY 422
>gi|307105927|gb|EFN54174.1| hypothetical protein CHLNCDRAFT_53167 [Chlorella variabilis]
Length = 860
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 151/216 (69%), Gaps = 5/216 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+ ++ YGPCQTPTL FCV+R+ I SF+PE FW + P Q G+ L LEW R ++FD +V
Sbjct: 209 SAVISYGPCQTPTLNFCVERHQAIVSFQPEPFWVVRPRASQAGHALNLEWGRGRVFDGEV 268
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+FQ+LV + + +V I + + PC L V LLK ASS+LG GP AMQ+AERLY
Sbjct: 269 GAVFQRLVHEAK--QVSMILTPVDPRDPPC-LCAVELLKTASSSLGIGPAYAMQVAERLY 325
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG++SYPRTESTAYP +FDF L+A +PVWG+Y L+ +A P+ G D GDHPP
Sbjct: 326 TQGYLSYPRTESTAYPPNFDFHTLLAAQRAHPVWGEYAASLMG-AFAAPKGGVDVGDHPP 384
Query: 187 ITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDC 221
ITP+R A+E ++ G D WRLY +V +HFLG++SPDC
Sbjct: 385 ITPVRCASEAELGGGDTWRLYDFVARHFLGSLSPDC 420
>gi|308480547|ref|XP_003102480.1| hypothetical protein CRE_04022 [Caenorhabditis remanei]
gi|308261212|gb|EFP05165.1| hypothetical protein CRE_04022 [Caenorhabditis remanei]
Length = 867
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 145/215 (67%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV R+ QI FKPE +W L + EW+R ++FD ++A
Sbjct: 212 VISYGPCQTPTLGFCVTRHDQIVQFKPEAYWVLKTTFSCDSQTFSPEWQRGRIFDAEIAR 271
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+F + + V+D+S+K+ K RPC LNTV L++VASS+LG P M +AE LYTQ
Sbjct: 272 LFVDRIKKSHSGVVVDVSKKEARKERPCALNTVELMRVASSSLGLSPSTTMHVAESLYTQ 331
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+TAYP++FD GTL L+ + WG V ++LAEG +P+SG D GDHPPIT
Sbjct: 332 GYISYPRTETTAYPANFDLNGTLKILSGDRKWGSVVSQVLAEGIKRPKSGVDKGDHPPIT 391
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMR+ T ++ G D R+Y YV QHF+ T+ C Y
Sbjct: 392 PMRANTGNLSG-DMARIYEYVSQHFVATLMKQCVY 425
>gi|341892314|gb|EGT48249.1| hypothetical protein CAEBREN_32330 [Caenorhabditis brenneri]
Length = 1276
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 143/215 (66%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV R+ QI FKPE +W L + EW+R ++FD ++A
Sbjct: 757 VISYGPCQTPTLGFCVTRHDQIVQFKPEAYWVLKTTFSCDSQTFSPEWQRGRIFDAEIAR 816
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+F + + V D+S+K+ K RPC LNTV L++VASS+LG P M +AE LYTQ
Sbjct: 817 LFVDRIKKSHSGVVTDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAESLYTQ 876
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+TAYP++FD GTL L+ + WG V ++LAEG +P+SG D GDHPPIT
Sbjct: 877 GYISYPRTETTAYPANFDLNGTLKILSGDRKWGSVVSQVLAEGIKRPKSGVDKGDHPPIT 936
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMR+ T + G D R+Y YV QHF+ T+ C Y
Sbjct: 937 PMRANTGGLSG-DMARIYEYVSQHFVATLMKQCVY 970
>gi|422293447|gb|EKU20747.1| DNA topoisomerase III [Nannochloropsis gaditana CCMP526]
Length = 870
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 146/216 (67%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+ +I SF PEKFW L + ++G + LEW R ++FD +VA
Sbjct: 197 LVSYGPCQTPTLGFCVQRHDEIQSFSPEKFWYLAAAVAKDGANVALEWGRGRVFDHEVAH 256
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+F LV + + V + + ++ + +P LNTV LLK AS LG GP M +AERLY
Sbjct: 257 VFLHLVGEAGSVAVDKVQKSEQRRTKPTALNTVELLKEASKVLGMGPAQTMSVAERLYLS 316
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G++SYPRTESTAYP SFD RG LS ++P WGDY + LL EG ++PR+G DAGDHPPIT
Sbjct: 317 GYLSYPRTESTAYPESFDVRGALSLQVSHPTWGDYAKGLLQEGVSRPRAGVDAGDHPPIT 376
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
P+R+ D RLY V +HFL ++S D +++
Sbjct: 377 PVRALDPTEFPGDMGRLYDLVTRHFLASLSHDARFL 412
>gi|326432311|gb|EGD77881.1| DNA topoisomerase [Salpingoeca sp. ATCC 50818]
Length = 855
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 145/215 (67%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L +GPCQTPTL CVQR+ I +F+PE +WTL + N +KL+W+R ++FD VA+
Sbjct: 209 VLSFGPCQTPTLALCVQRHDLIQTFQPETYWTLDVRALINDSPVKLQWDRVRVFDKTVAS 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+F + R +V+ + K+++K RP LNTV LL++ S+ LG GPQ AM +AERLY Q
Sbjct: 269 LFLHRIQDVRAAKVLRVQSKEKAKPRPTALNTVELLRICSAGLGIGPQQAMVVAERLYIQ 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+TAYP++FD L L +P WG LL KP+ G D GDHPPIT
Sbjct: 329 GYISYPRTETTAYPANFDTAAVLHELKGSPDWGKEARVLLDGALVKPKGGVDKGDHPPIT 388
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P R AT++ L D WR+Y VC+H++ T+SPDC+Y
Sbjct: 389 PARLATDNELSGDMWRVYDLVCRHYIATLSPDCRY 423
>gi|432876346|ref|XP_004073003.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-beta-1-like
[Oryzias latipes]
Length = 751
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 149/217 (68%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + L L+W R ++FD +V
Sbjct: 181 LISFGPCQTPTLGFCVERHDKIQSFKPETYWILQAKVFKGKDGPLTLDWSRVRVFDREVG 240
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF L + +V +S+K+++K RP LNTV +L+VASSALG GPQ MQ+AERLYT
Sbjct: 241 QMFVNLAKMSKEAKVEAVSQKEKTKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLYT 300
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +GTL AN+P+W + V+ LL+ G +PR G D G+HPP
Sbjct: 301 QGYISYPRTETTQYPENFDLKGTLRQQANSPMWAEEVKALLSAGLNRPRKGNDVGNHPPQ 360
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
+R G D WRLY Y+ +HF+ TVS DC+Y+
Sbjct: 361 DLIRIVLCCSAGSDGWRLYEYITRHFIATVSQDCRYL 397
>gi|241721971|ref|XP_002404156.1| topoisomerase I, putative [Ixodes scapularis]
gi|215505336|gb|EEC14830.1| topoisomerase I, putative [Ixodes scapularis]
Length = 857
Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 108/213 (50%), Positives = 147/213 (69%), Gaps = 1/213 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
+GPCQTPTLGFCV R+ +I SFKPE +W L V N L+WER ++FD +VA +F
Sbjct: 214 FGPCQTPTLGFCVDRHDKIQSFKPEAYWVLQ-VKVSNEQTFTLDWERGRIFDREVAMVFL 272
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ + + D+++K++SK RP LNTV L+++ASS LG GP AMQ+AERLY QG+I
Sbjct: 273 TQISNCKEALITDVTQKEKSKPRPVALNTVELMRIASSGLGMGPHHAMQVAERLYIQGYI 332
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMR 191
SYPRTE+T+YP +FD RGTL + P V+ LL++G +P+ G DAGDHPPITP +
Sbjct: 333 SYPRTETTSYPENFDLRGTLHQIQRVPDLSADVQELLSKGINRPKKGHDAGDHPPITPTK 392
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
A+ L DAWRLY Y+ +HF+ T+S D K++
Sbjct: 393 DASRGELDGDAWRLYDYIARHFVATLSEDMKFL 425
>gi|341886419|gb|EGT42354.1| hypothetical protein CAEBREN_30446, partial [Caenorhabditis
brenneri]
Length = 671
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 143/215 (66%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV R+ QI FKPE +W L + EW+R ++FD ++A
Sbjct: 13 VISYGPCQTPTLGFCVTRHDQIVQFKPEAYWVLKTTFSCDSQTFSPEWQRGRIFDAEIAR 72
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+F + + V D+S+K+ K RPC LNTV L++VASS+LG P M +AE LYTQ
Sbjct: 73 LFVDRIKKSHSGVVTDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAESLYTQ 132
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+TAYP++FD GTL L+ + WG V ++LAEG +P+SG D GDHPPIT
Sbjct: 133 GYISYPRTETTAYPANFDLNGTLKILSGDRKWGSVVSQVLAEGIKRPKSGVDKGDHPPIT 192
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMR+ T + G D R+Y YV QHF+ T+ C Y
Sbjct: 193 PMRANTGGLSG-DMARIYEYVSQHFVATLMKQCVY 226
>gi|449669651|ref|XP_002153907.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Hydra magnipapillata]
Length = 818
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/215 (51%), Positives = 145/215 (67%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCV R+ I SF+PE +W + L N + L+WER ++FD ++A
Sbjct: 208 LISYGPCQTPTLAFCVARHDIIQSFQPETYWKIQASLKPN---IILDWERVRIFDREIAN 264
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+F LV + V+ I E ++ K P LNTV LL+VASS LG GPQ M +AE+LYTQ
Sbjct: 265 LFFNLVKGAKEATVVSIQEVEKKKAPPIALNTVELLRVASSGLGIGPQQTMHIAEKLYTQ 324
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTE+T YP SFD G L N +G+YV +LL++G KPR G DAGDHPPIT
Sbjct: 325 GFISYPRTETTNYPKSFDLIGPLKLQCGNRSFGEYVSQLLSKGINKPRKGLDAGDHPPIT 384
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMR A+ + L D W++Y Y+ +HF+ TVS +C Y
Sbjct: 385 PMRLASPNDLSSDMWKVYDYIVKHFISTVSYECCY 419
>gi|256052775|ref|XP_002569927.1| prokaryotic DNA topoisomerase [Schistosoma mansoni]
gi|360043203|emb|CCD78615.1| putative prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1159
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 144/216 (66%), Gaps = 8/216 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ +GPCQTPTLGFCV+R+ QI SFKPE FW + L ++W F F
Sbjct: 520 LVSFGPCQTPTLGFCVKRHDQIQSFKPETFWRIKECL------FAIKWISVGTF-FSCRK 572
Query: 69 MF-QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + +M +L V+ +S KQ+ K RP GLNTV +L+VAS+ LG GP AM +AERLYT
Sbjct: 573 LFISQFLMGRIVLTVVQVSVKQKIKPRPQGLNTVEMLRVASAGLGIGPHSAMAIAERLYT 632
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
G+I+YPRTE+TAYP++FD RG L NNP+WGD +L G PR+G DAGDHPPI
Sbjct: 633 SGYINYPRTETTAYPNTFDLRGLLQQQVNNPLWGDLAREILHSGLTPPRAGHDAGDHPPI 692
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PMR A+ LG +A+RLY Y+ QHF+ T+ PDC Y
Sbjct: 693 APMRFASSQELGHEAYRLYEYITQHFIATIMPDCCY 728
>gi|303285318|ref|XP_003061949.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456360|gb|EEH53661.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 862
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 148/229 (64%), Gaps = 7/229 (3%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL--HPYLVQNGYELKLEWERQ 59
+ A+ ++ YGPCQTPTL F V+R+L I PE +W L + + L W R+
Sbjct: 201 YAALDASVVSYGPCQTPTLNFAVERHLDIAKHVPEDYWVLCVTARSTETDEVVALRWNRE 260
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDIS---EKQESKVRPCGLNTVNLLKVASSALGYGPQ 116
++FD D A +F++LV+ D + ++ +E + RP GLNTV +LK AS+ LG G
Sbjct: 261 RVFDRDAAELFKRLVVDDARANGVALTAFTRTEEKRPRPSGLNTVEMLKAASAGLGMGAH 320
Query: 117 MAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKP 175
AMQ+AERLY GFISYPRTESTAYP FD RGTLSA ++P WG++V LL G +P
Sbjct: 321 AAMQVAERLYISGFISYPRTESTAYPPGFDLRGTLSAQRHHPAWGEHVAELLDGGAMTRP 380
Query: 176 RSGTDAGDHPPITPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCKY 223
R G D GDHPPI P RSAT + + G DAWRLY ++ +HF+ ++SPDC Y
Sbjct: 381 RGGKDEGDHPPIAPTRSATSERVGGGDAWRLYDFIARHFIASLSPDCAY 429
>gi|426393714|ref|XP_004063158.1| PREDICTED: DNA topoisomerase 3-beta-1 [Gorilla gorilla gorilla]
Length = 653
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/204 (53%), Positives = 144/204 (70%), Gaps = 2/204 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQ 211
TPM+SATE L W +S CQ
Sbjct: 391 TPMKSATEAELAGLRWYQWSE-CQ 413
>gi|428178584|gb|EKX47459.1| hypothetical protein GUITHDRAFT_69656 [Guillardia theta CCMP2712]
Length = 807
Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 145/217 (66%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGY-ELKLEWERQKLFDFDVA 67
I+ YGPCQTPTLGFCV+R++ I +F PE +W L P + GY +K EWER ++FD VA
Sbjct: 210 IVSYGPCQTPTLGFCVERHILIQNFVPEPYWVLCPTIKIEGYGAVKFEWERGRIFDKRVA 269
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
++F+ ++++D L+++ +++K+ K RP LNTV +LK S ALG GP AM AE LY
Sbjct: 270 SVFRSIMLEDSRLKILRVNQKEVKKGRPTPLNTVAMLKACSKALGIGPASAMHTAENLYL 329
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTESTAYP S + TL + + +WG +V+ LL + P+SG D GDHPPI
Sbjct: 330 QGYISYPRTESTAYPKSMNIEETLRQFSRHAIWGGFVDDLLPRNWVTPKSGVDVGDHPPI 389
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TP R A L D R+Y + +HF+ TVSPD Y+
Sbjct: 390 TPCRLAQPGDLSSDQGRVYDLIAKHFIATVSPDAVYL 426
>gi|391327272|ref|XP_003738127.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Metaseiulus
occidentalis]
Length = 851
Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 147/216 (68%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L+ + + N + EW++ +FD +VA
Sbjct: 209 LISFGPCQTPTLGFCVERHDKIQSFKPENYWVLNAQIKLPNNNIVTPEWDKGSIFDQEVA 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
++ + V+ I +K+ SK RP LNTV L++ AS+ LG GPQ AMQ+AE+LYT
Sbjct: 269 SVCLAMAKGANHARVLSIQDKEMSKSRPLALNTVELMRAASAGLGMGPQHAMQIAEKLYT 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QGFISYPRTE+T+Y + D RGT+ L N P ++ +LLA G KP+ GTD GDHPPI
Sbjct: 329 QGFISYPRTETTSYSENMDLRGTVQMLKNIPEASNFANKLLANGL-KPKKGTDVGDHPPI 387
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
TP ++A+ L D+WRLY Y+ HFLG++ D KY
Sbjct: 388 TPTKAASRAQLDGDSWRLYEYIVAHFLGSLGGDLKY 423
>gi|145347645|ref|XP_001418273.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578502|gb|ABO96566.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 863
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 139/219 (63%), Gaps = 4/219 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDV 66
++ YGPCQTPTLGF VQR+L+I PE +W L G + W R +LFD +
Sbjct: 226 VVSYGPCQTPTLGFAVQRHLEIIRHVPEPYWALDASFDDAATGDTIAPAWRRTRLFDEET 285
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
F +LV V I E + RP GLNTV +LK AS+ LG G AMQ+AERLY
Sbjct: 286 TRAFLQLVNDANEFRVTSIEVNAEKRGRPSGLNTVEMLKAASAGLGMGAHRAMQVAERLY 345
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAKPRSGTDAGDHP 185
G ISYPRTESTAYP F+ + TL+ ++P WG +V RLL E P+ G DAGDHP
Sbjct: 346 MAGHISYPRTESTAYPRGFELKQTLTIQKSHPTWGAFVSRLLDESSMTSPKRGVDAGDHP 405
Query: 186 PITPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCKY 223
PITPMR++TED + G +AWRLY ++ +HF+ +VSPDC+Y
Sbjct: 406 PITPMRASTEDQVGGGEAWRLYDFISRHFIASVSPDCEY 444
>gi|157129809|ref|XP_001655482.1| prokaryotic DNA topoisomerase [Aedes aegypti]
gi|108872077|gb|EAT36302.1| AAEL011603-PA [Aedes aegypti]
Length = 856
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 149/216 (68%), Gaps = 3/216 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+ +I +FKPE FW + + +N E+KLEW R ++F+ +VA
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIQTFKPESFWYVQVTVGENP-EIKLEWSRVRIFEKEVAC 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MF V + V ++ K+ + RP LNTV L++ AS+ LG GP AMQ+AE+LYT+
Sbjct: 268 MFLNKVKDQKEALVESVTSKETFRSRPQALNTVELMRAASAGLGIGPHTAMQIAEKLYTR 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+T YP++FD G + L + +G+ +L + + PR G DAGDHPPIT
Sbjct: 328 GYISYPRTETTQYPTNFDLVGVVKLLQPSSEFGEEARDILRD-MSSPRKGNDAGDHPPIT 386
Query: 189 PMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ A+ + L G D WRLY Y+C+HFLGT+S D KY
Sbjct: 387 PMKLASRNELDGGDTWRLYDYICRHFLGTISRDLKY 422
>gi|392892249|ref|NP_001254381.1| Protein Y48C3A.14, isoform a [Caenorhabditis elegans]
gi|371571205|emb|CCF23416.1| Protein Y48C3A.14, isoform a [Caenorhabditis elegans]
Length = 869
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 143/217 (65%), Gaps = 3/217 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV--QNGYELKLEWERQKLFDFDV 66
++ YGPCQTPTLGFCV R+ QI FKPE++W L +G EW+R ++FD +V
Sbjct: 212 VISYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNFTTSDDGQIFSPEWQRGRIFDAEV 271
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A +F + + V+D+S+K+ K RPC LNTV L++VASS+LG P M +AE LY
Sbjct: 272 ARVFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAEALY 331
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+TAY ++FD GTL LA + WG V ++LA+G +P+SG D GDHPP
Sbjct: 332 TQGYISYPRTETTAYSANFDLTGTLKILAGDRKWGSVVSQVLADGIKRPKSGVDKGDHPP 391
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
ITPMR + G D R+Y YV QHF+ T+ C Y
Sbjct: 392 ITPMRPNHGGLSG-DMSRIYEYVSQHFVATLMKQCVY 427
>gi|392892251|ref|NP_001254382.1| Protein Y48C3A.14, isoform c [Caenorhabditis elegans]
gi|371571202|emb|CCF23413.1| Protein Y48C3A.14, isoform c [Caenorhabditis elegans]
Length = 733
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 143/217 (65%), Gaps = 3/217 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV--QNGYELKLEWERQKLFDFDV 66
++ YGPCQTPTLGFCV R+ QI FKPE++W L +G EW+R ++FD +V
Sbjct: 76 VISYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNFTTSDDGQIFSPEWQRGRIFDAEV 135
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A +F + + V+D+S+K+ K RPC LNTV L++VASS+LG P M +AE LY
Sbjct: 136 ARVFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAEALY 195
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE+TAY ++FD GTL LA + WG V ++LA+G +P+SG D GDHPP
Sbjct: 196 TQGYISYPRTETTAYSANFDLTGTLKILAGDRKWGSVVSQVLADGIKRPKSGVDKGDHPP 255
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
ITPMR + G D R+Y YV QHF+ T+ C Y
Sbjct: 256 ITPMRPNHGGLSG-DMSRIYEYVSQHFVATLMKQCVY 291
>gi|294948596|ref|XP_002785799.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
gi|239899907|gb|EER17595.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
Length = 850
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 147/218 (67%), Gaps = 3/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDV 66
++ YGPCQTPTL FCV+R+ I +F+PE ++T+ L Q L LEW R +LFD
Sbjct: 207 LVSYGPCQTPTLWFCVRRHNDIQTFQPETYYTIDVKLEGSQLASPLWLEWSRGQLFDLQA 266
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
AT F+ ++ + V D+SEK+E + RP +NTV +LK+AS LG GPQ AMQ+AERLY
Sbjct: 267 ATTFKSMIDAYQWATVTDVSEKEERRSRPGAMNTVLMLKLASQQLGMGPQQAMQVAERLY 326
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
G+I+YPRTE+T YP +FD R +S + NP WG++ LL G +P+ G DAGDHPP
Sbjct: 327 LSGYITYPRTETTKYPPAFDLREAVSFQSRNPYWGEFATELLTTGLNRPKEGYDAGDHPP 386
Query: 187 ITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
ITP+RSATE D D+WRL+ + +HFL ++ DCK+
Sbjct: 387 ITPVRSATEGDFGSSDSWRLFDMLTRHFLASLGHDCKF 424
>gi|2114264|dbj|BAA20009.1| topoisomerase-III [Homo sapiens]
Length = 753
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 152/233 (65%), Gaps = 21/233 (9%)
Query: 3 VAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKL 61
A + ++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++
Sbjct: 190 CAFTSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRV 249
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
FD ++A MF + ++ +V S K+++K RP LNTV +L++ GPQ AMQ
Sbjct: 250 FDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRM-------GPQHAMQT 302
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AERLYTQG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DA
Sbjct: 303 AERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDA 362
Query: 182 GDHPPITPMRSATEDMLGKDAWRLYSY-VC---------QHFLGTVSPDCKYI 224
GDHPPITPM+SATE LG L Y VC QHF+ TVS DCKY+
Sbjct: 363 GDHPPITPMKSATEAELGT---ALIPYPVCFQGGKGELRQHFIATVSHDCKYL 412
>gi|294889461|ref|XP_002772824.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
gi|239877374|gb|EER04640.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
Length = 813
Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 147/218 (67%), Gaps = 3/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDV 66
++ YGPCQTPTL FCV+R+ I +F+PE ++T+ L Q L LEW R +LFD
Sbjct: 207 LVSYGPCQTPTLWFCVRRHNDIQTFQPETYYTIDVKLEGSQLASPLWLEWSRGQLFDLQA 266
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
AT F+ ++ + V D+SEK+E + RP +NTV +LK+AS LG GPQ AMQ+AERLY
Sbjct: 267 ATTFKSMIDAYQWATVTDVSEKEERRSRPGAMNTVLMLKLASQQLGMGPQQAMQVAERLY 326
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
G+I+YPRTE+T YP +FD R +S + NP WG++ LL G +P+ G DAGDHPP
Sbjct: 327 LSGYITYPRTETTKYPPAFDLREAVSFQSRNPYWGEFATELLTTGLNRPKEGYDAGDHPP 386
Query: 187 ITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
ITP+RSATE D D+WRL+ + +HFL ++ DCK+
Sbjct: 387 ITPVRSATEGDFGSSDSWRLFDMLTRHFLASLGHDCKF 424
>gi|324504807|gb|ADY42072.1| DNA topoisomerase 3-beta-1 [Ascaris suum]
Length = 858
Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 142/214 (66%), Gaps = 2/214 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVATMF 70
+GPCQTPTLGFCV R+ IT FKPE +W + L ++G EL+ E+ R ++FD DV +F
Sbjct: 215 FGPCQTPTLGFCVTRHDLITQFKPEPYWLVQVVLETKDGKELRPEFSRGRIFDRDVCQLF 274
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ V ++ I V D+ K+ K RP LNTV +++VASS LG P AM AE LYT+GF
Sbjct: 275 LERVKKENIGMVSDVFTKEGRKDRPQALNTVEMMRVASSGLGMSPSNAMSTAEYLYTRGF 334
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
ISYPRTE+ YP +FD G L N+P WG+ V+++L+EG KPR G D GDHPPITPM
Sbjct: 335 ISYPRTETNTYPVNFDLIGPLRQQQNDPRWGNIVKQVLSEGITKPRGGEDKGDHPPITPM 394
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
RS + G DA RLY YV QHF+ T+ C Y+
Sbjct: 395 RSDDGSLSG-DALRLYQYVTQHFIATLMRPCTYL 427
>gi|195041892|ref|XP_001991334.1| GH12112 [Drosophila grimshawi]
gi|193901092|gb|EDV99958.1| GH12112 [Drosophila grimshawi]
Length = 862
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 138/215 (64%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW L L+ E LEW R ++F D+A
Sbjct: 210 LISYGPCQTPTLGFCVKRHDDIQTFKPETFWYLQ--LLAGQPEFTLEWARGRVFKKDIAI 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V +S K+ + +P LNTV L+++ SS LG GP AMQ AERLYTQ
Sbjct: 268 MLLNRVKEHKEATVESVSSKESFRSKPQALNTVELMRICSSGLGIGPYQAMQFAERLYTQ 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP +FD L L + +G+ R +A + PR G DAGDHPPIT
Sbjct: 328 GYISYPRTETNQYPENFDLHAVLRVLQPSSDFGEEA-RAIAADFQTPRKGKDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ A + +D WR+Y ++C+HFLGT+S D KY
Sbjct: 387 PMKLANRNEFDRDTWRVYEFICRHFLGTISRDLKY 421
>gi|325189814|emb|CCA24294.1| PREDICTED: DNA topoisomerase 3beta1like isoform 1 putative [Albugo
laibachii Nc14]
Length = 928
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 137/216 (63%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV R+ QI F+PE FWT+ + ++ +KL+W+R +FD +
Sbjct: 209 LVSYGPCQTPTLGFCVDRFDQIQQFQPEPFWTIEVGITKDNQTIKLDWDRGHIFDHEAVC 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+++ IL V + E + ++ RP LNTV LL+ AS L GP MQ+AERLY Q
Sbjct: 269 ALNEVISDKNILLVSSVKESEVTRFRPTPLNTVQLLQHASKQLSMGPFTTMQIAERLYLQ 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTEST+YP SFD TL N WG YVE LL GY +P+ G D GDHPPIT
Sbjct: 329 GYISYPRTESTSYPDSFDVESTLLQHTRNSHWGTYVENLLHRGYQRPKKGVDVGDHPPIT 388
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
P+R+ L + RLY ++ ++F+ TVS D + +
Sbjct: 389 PVRAVELKDLAGEMARLYDFIARYFIATVSRDARLL 424
>gi|126649305|ref|XP_001388324.1| DNA topoisomerase III beta-1 [Cryptosporidium parvum Iowa II]
gi|32398820|emb|CAD98530.1| DNA topoisomerase III beta-1, probable [Cryptosporidium parvum]
gi|126117418|gb|EAZ51518.1| DNA topoisomerase III beta-1, putative [Cryptosporidium parvum Iowa
II]
Length = 835
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 144/219 (65%), Gaps = 3/219 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YGPCQTPTL F VQR I SF PEK++T+ L ++ ++ L W R ++F+ VA
Sbjct: 208 IISYGPCQTPTLFFTVQRRDSINSFIPEKYYTISATLSKDSQDINLIWSRSRVFELQVAN 267
Query: 69 MFQKLVMQDRIL--EVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
F +L+ + L V+DI+ K ++RP LNTV++LK++S+ LG GP + +AE+LY
Sbjct: 268 CFLQLIQNKKPLSARVVDITSKNSRRIRPLPLNTVSMLKLSSTILGIGPFQTLNIAEKLY 327
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR-SGTDAGDHP 185
GF +YPRTE++ YP +FD + T++ NN VWG Y LL +G+ PR G D GDHP
Sbjct: 328 LSGFTTYPRTETSRYPKNFDIKSTIAMFKNNSVWGSYSSDLLQKGFNLPRKDGLDLGDHP 387
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PITP+RSAT++ L D+WRLY + +HF T+S D K I
Sbjct: 388 PITPVRSATQNDLDGDSWRLYDLITRHFFATISNDIKMI 426
>gi|195448334|ref|XP_002071612.1| GK10076 [Drosophila willistoni]
gi|194167697|gb|EDW82598.1| GK10076 [Drosophila willistoni]
Length = 884
Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 139/215 (64%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW L L+ E LEW R ++F D+A
Sbjct: 210 LISYGPCQTPTLGFCVKRHDDIQTFKPESFWYLQ--LLAGQPEFTLEWARVRVFKKDIAI 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M + V + + V ++ K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 268 MLMQKVKEQKEAMVESVTSKETFKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTE+ YP++FD + L + +GD R +A PR G DAGDHPPIT
Sbjct: 328 GFISYPRTETNQYPANFDLPAVVRVLQPSNEFGDDA-REIATDMQTPRKGKDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ A +D WR+Y ++C+HFLGTVS D KY
Sbjct: 387 PMKLAQRGEFDRDTWRVYEFICRHFLGTVSRDLKY 421
>gi|193591899|ref|XP_001951574.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 1 [Acyrthosiphon
pisum]
Length = 854
Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 144/217 (66%), Gaps = 2/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH--PYLVQNGYELKLEWERQKLFDFDV 66
++ YGPCQTPTLGFCVQR+ +I FKPE +W + Y +G ++ L WE+ + F+ D
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIRRFKPEPYWVIQVRKYKYLDGQDVVLNWEKGRCFERDA 268
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ + + + +I V+ I+++++SK RP LN+V L++ AS+ LG GP AMQLAERLY
Sbjct: 269 SNSLLQALKKQQIATVVSITQQEKSKQRPLALNSVELMRAASTGLGMGPHHAMQLAERLY 328
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
QG+ISYPRTE++ Y +F+ + L + WG + ++L G +PR+G D GDHPP
Sbjct: 329 IQGYISYPRTETSHYSDNFELLPAMRTLQKSNEWGQEIRQVLNNGLTRPRNGKDCGDHPP 388
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
ITP A+ + L D+W+LY ++ +HF+ T+S DC+Y
Sbjct: 389 ITPTMLASRNDLDGDSWKLYDFIVRHFIATISKDCRY 425
>gi|170047094|ref|XP_001851071.1| DNA topoisomerase 3-beta [Culex quinquefasciatus]
gi|167869634|gb|EDS33017.1| DNA topoisomerase 3-beta [Culex quinquefasciatus]
Length = 855
Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 148/216 (68%), Gaps = 3/216 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL CVQR+ +I +FKPE FW + + +N E+KL+W R ++F+ +VA
Sbjct: 209 LISYGPCQTPTLTLCVQRHDEIQTFKPESFWYVQVTVGENP-EIKLDWSRVRIFEKEVAC 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MF V + V ++S K+ K RP LNTV L++ AS+ LG GP AMQ+AE+LYT+
Sbjct: 268 MFLNKVKDHKEAIVENVSSKEAFKGRPQALNTVELMRAASAGLGIGPHSAMQIAEKLYTR 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+T YP++FD G + L ++ +GD + +L + PR G DAGDHPPIT
Sbjct: 328 GYISYPRTETTQYPTNFDLVGVVKLLQHSSEFGDEAKSILHD-MNSPRKGNDAGDHPPIT 386
Query: 189 PMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ A+ + L G D +R+Y Y+C+HFL TVS D KY
Sbjct: 387 PMKLASRNELDGGDTFRVYDYICRHFLATVSRDLKY 422
>gi|328697671|ref|XP_003240406.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Acyrthosiphon
pisum]
Length = 853
Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 145/216 (67%), Gaps = 1/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ YGPCQTPTLGFCVQR+ +I FKPE +W + + ++G ++ L WE+ + F+ D +
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIRRFKPEPYWVIQVTIQSKDGQDVVLNWEKGRCFERDAS 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + +I V+ I+++++SK RP LN+V L++ AS+ LG GP AMQLAERLY
Sbjct: 269 NSLLQALKKQQIATVVSITQQEKSKQRPLALNSVELMRAASTGLGMGPHHAMQLAERLYI 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE++ Y +F+ + L + WG + ++L G +PR+G D GDHPPI
Sbjct: 329 QGYISYPRTETSHYSDNFELLPAMRTLQKSNEWGQEIRQVLNNGLTRPRNGKDCGDHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
TP A+ + L D+W+LY ++ +HF+ T+S DC+Y
Sbjct: 389 TPTMLASRNDLDGDSWKLYDFIVRHFIATISKDCRY 424
>gi|195399043|ref|XP_002058130.1| GJ15664 [Drosophila virilis]
gi|194150554|gb|EDW66238.1| GJ15664 [Drosophila virilis]
Length = 858
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 137/215 (63%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW L L+ E LEW R ++F D+A
Sbjct: 209 LISYGPCQTPTLGFCVKRHDDIQTFKPETFWYLQ--LMAGQPEYTLEWARGRVFKKDIAI 266
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V +S K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 267 MLLNRVKEHKEATVESVSSKESFKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 326
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP +FD L L + +GD R +A + PR G DAGDHPPIT
Sbjct: 327 GYISYPRTETNQYPENFDLHAVLRVLQPSGDFGDEA-RAIAGDFQTPRKGKDAGDHPPIT 385
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ +D WR+Y ++C+HF+GT+S D KY
Sbjct: 386 PMKLGHRGDFDRDTWRVYEFICRHFMGTISRDLKY 420
>gi|4263718|gb|AAD15404.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 836
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 132/213 (61%), Gaps = 48/213 (22%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YGPCQTPTLGFCVQRY+ I +FKPEKFW L PY+ ++GYEL+LEWER++LFD + AT+FQ
Sbjct: 229 YGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYIRKDGYELQLEWERRRLFDLEAATVFQ 288
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
KLV++ R +V+D+SEKQE K RP GLNTVNLLK + G
Sbjct: 289 KLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLLKCSRVWASDG----------------- 331
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMR 191
Y + Y S F GT DAGDHPPITPMR
Sbjct: 332 -YASCRAIVY-SRFHQSGT-----------------------------DAGDHPPITPMR 360
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
+ATE M+G DAWRLY YVCQHFLGTVSP+CKYI
Sbjct: 361 AATEVMVGGDAWRLYQYVCQHFLGTVSPNCKYI 393
>gi|195340394|ref|XP_002036798.1| GM12581 [Drosophila sechellia]
gi|194130914|gb|EDW52957.1| GM12581 [Drosophila sechellia]
Length = 921
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 138/215 (64%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW H L+ E+ LEW R ++F D+A
Sbjct: 256 LISYGPCQTPTLGFCVKRHDDIQTFKPESFW--HLQLLAGQPEVTLEWARGRVFKKDIAI 313
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V ++ K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 314 MLLNRVKEHKKATVESVASKEAYKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 373
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP++FD L L + +G+ +L + PR G DAGDHPPIT
Sbjct: 374 GYISYPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPIT 432
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ +D WR+Y ++C+HF+GTVS D KY
Sbjct: 433 PMKLGNRSDFDRDTWRVYEFICRHFMGTVSRDLKY 467
>gi|195133228|ref|XP_002011041.1| GI16324 [Drosophila mojavensis]
gi|193907016|gb|EDW05883.1| GI16324 [Drosophila mojavensis]
Length = 858
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 138/215 (64%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I FKPE FW L LV E+ LEW R ++F ++A
Sbjct: 209 LISYGPCQTPTLGFCVKRHDDIQLFKPETFWYLQ--LVAGQPEVTLEWARGRVFKKNIAI 266
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V +S K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 267 MLLNRVKEHKEATVESVSSKESFKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 326
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP +FD L L + +GD R ++ + PR G DAGDHPPIT
Sbjct: 327 GYISYPRTETNQYPENFDLHAVLRLLQPSGDFGDEA-RAISSDFQTPRKGKDAGDHPPIT 385
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ + +D WR+Y ++C+HF+GT+S D KY
Sbjct: 386 PMKLGHRNDFDRDTWRVYEFICRHFMGTISRDLKY 420
>gi|4235475|gb|AAD13219.1| topoisomerase III [Drosophila melanogaster]
Length = 875
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 138/215 (64%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW H L+ E+ LEW R ++F D+A
Sbjct: 210 LISYGPCQTPTLGFCVKRHDDIQTFKPESFW--HLQLLAGQPEVTLEWARGRVFKKDIAI 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V ++ K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 268 MLLNRVKEHKKATVESVASKEAYKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP++FD L L + +G+ +L + PR G DAGDHPPIT
Sbjct: 328 GYISYPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ +D WR+Y ++C+HF+GTVS D KY
Sbjct: 387 PMKLGNRSDFDRDTWRVYEFICRHFMGTVSRDLKY 421
>gi|24640096|ref|NP_511059.2| topoisomerase 3beta [Drosophila melanogaster]
gi|14286175|sp|O96651.2|TOP3B_DROME RecName: Full=DNA topoisomerase 3-beta; AltName: Full=DNA
topoisomerase III beta
gi|7290697|gb|AAF46144.1| topoisomerase 3beta [Drosophila melanogaster]
gi|54650844|gb|AAV37001.1| LD10035p [Drosophila melanogaster]
gi|220950396|gb|ACL87741.1| Top3beta-PA [synthetic construct]
Length = 875
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 138/215 (64%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW H L+ E+ LEW R ++F D+A
Sbjct: 210 LISYGPCQTPTLGFCVKRHDDIQTFKPESFW--HLQLLAGQPEVTLEWARGRVFKKDIAI 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V ++ K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 268 MLLNRVKEHKKATVESVASKEAYKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP++FD L L + +G+ +L + PR G DAGDHPPIT
Sbjct: 328 GYISYPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ +D WR+Y ++C+HF+GTVS D KY
Sbjct: 387 PMKLGNRSDFDRDTWRVYEFICRHFMGTVSRDLKY 421
>gi|195164959|ref|XP_002023313.1| GL20281 [Drosophila persimilis]
gi|198468405|ref|XP_001354695.2| GA17464 [Drosophila pseudoobscura pseudoobscura]
gi|194105418|gb|EDW27461.1| GL20281 [Drosophila persimilis]
gi|198146398|gb|EAL31750.2| GA17464 [Drosophila pseudoobscura pseudoobscura]
Length = 875
Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 138/215 (64%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW L ++ E LEW R ++F D+A
Sbjct: 210 LISYGPCQTPTLGFCVKRHDDIQTFKPESFWYLQ--MLAGQPEFTLEWGRGRVFKKDIAI 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V +S K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 268 MLLNRVKEHKEATVESVSSKEAFKSKPLALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G++SYPRTE+ YP +FD L L + +GD +L + A PR G DAGDHPPIT
Sbjct: 328 GYVSYPRTETNQYPENFDLPAVLRVLQPSGDFGDEARSILGDIQA-PRKGKDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ A +D WR+Y ++C+HF+GT+S D KY
Sbjct: 387 PMKLANRSDFDRDTWRVYEFICRHFMGTLSRDLKY 421
>gi|195565409|ref|XP_002106294.1| GD16199 [Drosophila simulans]
gi|194203668|gb|EDX17244.1| GD16199 [Drosophila simulans]
Length = 821
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 138/215 (64%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW H L+ E+ LEW R ++F D+A
Sbjct: 156 LISYGPCQTPTLGFCVKRHDDIQTFKPESFW--HLQLLAGQPEVTLEWARGRVFKKDIAI 213
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V ++ K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 214 MLLNRVKEHKKATVESVASKEAFKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 273
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP++FD L L + +G+ +L + PR G DAGDHPPIT
Sbjct: 274 GYISYPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPIT 332
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ +D WR+Y ++C+HF+GTVS D KY
Sbjct: 333 PMKLGNRSDFDRDTWRVYEFICRHFMGTVSRDLKY 367
>gi|340372491|ref|XP_003384777.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Amphimedon
queenslandica]
Length = 849
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 143/224 (63%), Gaps = 1/224 (0%)
Query: 1 MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQ 59
++ + ++ YGPCQTPTLGFCV+R+ +I FKPEK+W L + + L L+W+++
Sbjct: 209 LYSGLNNSVISYGPCQTPTLGFCVERHDEIQHFKPEKYWKLDCSVSHSSSNPLSLQWDKE 268
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
++FD +V +F ++ +I V +SEK SK P L+TV +L+ SS L P+ AM
Sbjct: 269 RIFDHEVIKLFHLMLTHHKIASVESVSEKSRSKAPPLPLHTVEMLRACSSRLHISPKQAM 328
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
+AERLYT+G+ISYPRTE+T YP+ FDF+ +S L N + ++ +LL G P G
Sbjct: 329 DIAERLYTEGYISYPRTETTKYPAGFDFKSIVSDLNKNEHFKEFTSQLLTGGIRPPSVGK 388
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
D GDHPPITP+R+A + + W++Y + HFL T+ PDCKY
Sbjct: 389 DVGDHPPITPLRNAPREAVSDTQWKVYEMITCHFLATLFPDCKY 432
>gi|194896190|ref|XP_001978430.1| GG17682 [Drosophila erecta]
gi|190650079|gb|EDV47357.1| GG17682 [Drosophila erecta]
Length = 878
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 137/215 (63%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW H L+ E LEW R ++F D+A
Sbjct: 210 LISYGPCQTPTLGFCVKRHDDIQTFKPESFW--HLQLLAGQPEFTLEWARGRVFKKDIAI 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V ++ K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 268 MLLGRVKEHKKATVESVASKEAFKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP++FD L L + +G+ +L + PR G DAGDHPPIT
Sbjct: 328 GYISYPRTETNQYPTNFDLAAVLHVLKPSGDFGEEARSILGD-MQTPRKGKDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ +D WR+Y ++C+HF+GTVS D KY
Sbjct: 387 PMKLGNRSDFDRDTWRVYEFICRHFMGTVSRDLKY 421
>gi|195469926|ref|XP_002099887.1| GE16470 [Drosophila yakuba]
gi|194187411|gb|EDX00995.1| GE16470 [Drosophila yakuba]
Length = 878
Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 137/215 (63%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW H L+ E LEW R ++F D+A
Sbjct: 210 LISYGPCQTPTLGFCVKRHDDIQTFKPESFW--HLQLLAGQPEFTLEWARGRVFKKDIAI 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V ++ K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 268 MLLGRVKEHKEATVESVASKEAFKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP++FD L L + +G+ +L + PR G DAGDHPPIT
Sbjct: 328 GYISYPRTETNQYPTNFDLPAVLHVLKPSGDFGEEARSILGD-MQTPRKGKDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ +D WR+Y ++C+HF+GTVS D KY
Sbjct: 387 PMKLGNRSDFDRDTWRVYEFICRHFMGTVSRDLKY 421
>gi|194762590|ref|XP_001963417.1| GF20299 [Drosophila ananassae]
gi|190629076|gb|EDV44493.1| GF20299 [Drosophila ananassae]
Length = 878
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 136/215 (63%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW L L+ E LEW R ++F D+A
Sbjct: 210 LISYGPCQTPTLGFCVKRHDDIQTFKPESFWYLQ--LLAGQPEFTLEWARGRVFKKDIAI 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
V + + V +S K+ K +P LNTV L+++ SS L GP AMQ+AERLYTQ
Sbjct: 268 TLLNRVKEQKEATVESVSSKEAFKSKPQALNTVELMRICSSGLSIGPFQAMQIAERLYTQ 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP++FD L L + +GD +L + PR G DAGDHPPIT
Sbjct: 328 GYISYPRTETNQYPANFDLPAVLRVLQPSGEFGDEARSILGD-LQTPRKGKDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ + +D WR+Y ++C+HF+GTVS D KY
Sbjct: 387 PMKLGSRSDFDRDTWRVYEFICRHFMGTVSRDLKY 421
>gi|7510001|pir||T31599 hypothetical protein Y48C3A.q - Caenorhabditis elegans
Length = 646
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 143/245 (58%), Gaps = 31/245 (12%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV--QNGYELKLEWERQKLFDFDV 66
++ YGPCQTPTLGFCV R+ QI FKPE++W L +G EW+R ++FD +V
Sbjct: 212 VISYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNFTTSDDGQIFSPEWQRGRIFDAEV 271
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A +F + + V+D+S+K+ K RPC LNTV L++VASS+LG P M +AE LY
Sbjct: 272 ARVFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAEALY 331
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVER-------------------- 166
TQG+ISYPRTE+TAY ++FD GTL LA + WG V +
Sbjct: 332 TQGYISYPRTETTAYSANFDLTGTLKILAGDRKWGSVVSQASGNGKIFDFFSIFFDFFDF 391
Query: 167 --------LLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
+LA+G +P+SG D GDHPPITPMR + G D R+Y YV QHF+ T+
Sbjct: 392 FDFFRCFSVLADGIKRPKSGVDKGDHPPITPMRPNHGGLSG-DMSRIYEYVSQHFVATLM 450
Query: 219 PDCKY 223
C Y
Sbjct: 451 KQCVY 455
>gi|313229708|emb|CBY18523.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 140/215 (65%), Gaps = 2/215 (0%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVAT 68
+ YGPCQTPTLGFCV+R+ QIT FKPEKFW + + +N L +W+R ++FD VA
Sbjct: 206 ISYGPCQTPTLGFCVERHDQITKFKPEKFWRMSLAVQTENSGNLYADWQRGRIFDQGVAN 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M + + V +S+K ++K RP LNTV LL+V S+ LG GP AM AERLYTQ
Sbjct: 266 MLHGKIKNIKSAVVQSVSKKAKAKQRPVALNTVELLRVCSAKLGIGPAQAMVSAERLYTQ 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTE+T+Y +FDFR +S L ++ + L+ + PR G D GDHPPIT
Sbjct: 326 GFISYPRTETTSYSENFDFRPVISMLQHSTPHSIAAQELM-KSSPNPRKGEDKGDHPPIT 384
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P R+ +E +G +A+R+Y+YV HFL ++ D KY
Sbjct: 385 PQRNCSETEVGGEAYRVYNYVASHFLASLMKDYKY 419
>gi|313224215|emb|CBY32300.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 140/215 (65%), Gaps = 2/215 (0%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVAT 68
+ YGPCQTPTLGFCV+R+ QIT FKPEKFW + + +N L +W+R ++FD VA
Sbjct: 206 ISYGPCQTPTLGFCVERHDQITKFKPEKFWRMSLAVQTENSGNLYADWQRGRIFDQGVAN 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M + + V +S+K ++K RP LNTV LL+V S+ LG GP AM AERLYTQ
Sbjct: 266 MLHGKIKNIKSAVVQSVSKKAKAKQRPVALNTVELLRVCSAKLGIGPAQAMVSAERLYTQ 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTE+T+Y +FDFR +S L ++ + L+ + PR G D GDHPPIT
Sbjct: 326 GFISYPRTETTSYSENFDFRPVISMLQHSTPHSIAAQELM-KSSPNPRKGEDKGDHPPIT 384
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P R+ +E +G +A+R+Y+YV HFL ++ D KY
Sbjct: 385 PQRNCSETEVGGEAYRVYNYVASHFLASLMKDYKY 419
>gi|402580660|gb|EJW74609.1| DNA topoisomerase [Wuchereria bancrofti]
Length = 268
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 135/214 (63%), Gaps = 2/214 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQKLFDFDVATMF 70
+GPCQTPTLGFCV R+ IT FKPE +W L + +G LK R ++FD DV +F
Sbjct: 51 FGPCQTPTLGFCVTRHDLITQFKPEPYWILQAIFETSSGDTLKPTHVRGRIFDKDVCQLF 110
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ + V+D+ + K RP LNTV LLKVASS LG P M AE LYT+GF
Sbjct: 111 LDRIKKQNQGVVVDVVSSELRKERPQALNTVELLKVASSGLGLSPTQTMSTAEYLYTRGF 170
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
ISYPRTE+TAYPS+FDF L N+ W D V++LL+EG KPR+G D GDHPPI+P+
Sbjct: 171 ISYPRTETTAYPSNFDFSEALRHQQNDSRWKDIVKKLLSEGITKPRNGEDKGDHPPISPL 230
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
R + G DA ++Y YV QHF+ T+ C Y+
Sbjct: 231 RGNDGSLTG-DALKIYDYVTQHFIATLMQPCIYL 263
>gi|167525962|ref|XP_001747315.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774150|gb|EDQ87782.1| predicted protein [Monosiga brevicollis MX1]
Length = 803
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 97/199 (48%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 26 RYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDI 85
R+ Q +F PE++WT+ L + L+ +WER ++FD ++ +F V + V+ +
Sbjct: 198 RFFQ--TFTPERYWTIDLQLEHDSGFLRAQWERVRVFDQELGRVFTNRVQEASSARVVSV 255
Query: 86 SEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSF 145
SEK++ K RP LNTV L++V S+ LG GPQ AM +AERLY QG+ISYPRTE+TAYP +F
Sbjct: 256 SEKEKKKPRPNALNTVELMRVCSAGLGMGPQYAMAIAERLYMQGYISYPRTETTAYPENF 315
Query: 146 DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRL 205
D L N+P WG V+ LLA +P+ G D GDHPPITPMR A E LG D WR+
Sbjct: 316 DLVSVLKEQQNSPNWGKEVKELLAGAMVQPKGGKDVGDHPPITPMRVAQESDLGGDDWRV 375
Query: 206 YSYVCQHFLGTVSPDCKYI 224
Y V +HF+ T+SPDCKY+
Sbjct: 376 YDLVTRHFIATLSPDCKYL 394
>gi|340059110|emb|CCC53485.1| putative DNA topoisomerase III, fragment [Trypanosoma vivax Y486]
Length = 782
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 127/178 (71%)
Query: 45 LVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLL 104
L ++G ++ EW R ++FD +A + + V +++ +V+D+S +++ RP LNTV L+
Sbjct: 177 LNRSGAQITFEWVRGRVFDELIARLLHQKVSHNKVGKVVDVSVGADTRARPTALNTVELM 236
Query: 105 KVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYV 164
KVAS LG GP AMQLAE LY G+ISYPRTESTAYPSSFDF+G L+ +P WG YV
Sbjct: 237 KVASKLLGIGPHHAMQLAENLYVSGYISYPRTESTAYPSSFDFKGALAQHERHPQWGAYV 296
Query: 165 ERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ LL + Y +P++G DAGDHPPITPMR+A L D+WRLY Y+ +HF+ T+SPDCK
Sbjct: 297 QGLLKDRYTRPKAGKDAGDHPPITPMRAANPGELSSDSWRLYEYITRHFIATLSPDCK 354
>gi|313239950|emb|CBY32313.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 139/215 (64%), Gaps = 2/215 (0%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVAT 68
+ YGPCQTPTLGFCV+R+ QIT FKPEKFW + + +N L +W+R ++FD VA
Sbjct: 206 ISYGPCQTPTLGFCVERHDQITKFKPEKFWRMSLAVQTENSGNLYADWQRGRIFDQGVAN 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M + + V +S+K ++K RP LNTV LL+V S+ LG GP AM AERLYTQ
Sbjct: 266 MLHGKIKNIKSAVVQSVSKKAKAKQRPVALNTVELLRVCSAKLGIGPAQAMVSAERLYTQ 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+T+Y +FDFR +S L ++ + L+ + PR G D GDHPPIT
Sbjct: 326 GYISYPRTETTSYSENFDFRPVISMLQHSTPHSIAAQELM-KSSPNPRKGEDKGDHPPIT 384
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P R+ +E +G +A+R+Y YV HFL ++ D KY
Sbjct: 385 PQRNCSETEVGGEAYRVYYYVASHFLASLMKDYKY 419
>gi|170583127|ref|XP_001896443.1| DNA topoisomerase III beta-1 [Brugia malayi]
gi|158596370|gb|EDP34727.1| DNA topoisomerase III beta-1, putative [Brugia malayi]
Length = 858
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 134/214 (62%), Gaps = 2/214 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQKLFDFDVATMF 70
+GPCQTPTLGFCV R+ IT FKPE +W L + G LK R ++FD DV +F
Sbjct: 217 FGPCQTPTLGFCVTRHDLITQFKPEPYWILVAIFETSAGDTLKPTHVRGRIFDKDVCQLF 276
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ + V+D+ + K RP LNTV LLKVASS LG P M AE LYT+GF
Sbjct: 277 FDRIKKQNQGVVVDVISSELRKERPQALNTVELLKVASSGLGLSPTQTMSTAEYLYTRGF 336
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
ISYPRTE+TAYPS+FDF L N+ W D V++LL+EG KPR+G D GDHPPI+P+
Sbjct: 337 ISYPRTETTAYPSNFDFSEALRHQQNDSRWKDIVKKLLSEGITKPRNGEDKGDHPPISPL 396
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
R + G DA ++Y YV QHF+ T+ C Y+
Sbjct: 397 RGNDGSLTG-DALKIYDYVTQHFIATLMQPCIYL 429
>gi|194388180|dbj|BAG65474.1| unnamed protein product [Homo sapiens]
Length = 282
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/156 (60%), Positives = 118/156 (75%)
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYTQ
Sbjct: 1 MFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQ 60
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPIT
Sbjct: 61 GYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPIT 120
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 121 PMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 156
>gi|209878332|ref|XP_002140607.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
gi|209556213|gb|EEA06258.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
Length = 857
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 131/218 (60%), Gaps = 3/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL YGPCQTPTL F VQR +I F PEKF+ L+ + L WER+K+FD
Sbjct: 232 ILSYGPCQTPTLFFVVQRRDKILGFSPEKFYYLNVTIEYKDIILSPTWERKKIFDLQSIQ 291
Query: 69 MFQKLVMQDR--ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
V I +VIDI +K + RP LNTV +LK+AS+ LG P AM +AE+LY
Sbjct: 292 CLYNTVNSTYPIIAKVIDIKKKADRISRPLPLNTVQMLKLASNILGISPFQAMNIAEKLY 351
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR-SGTDAGDHP 185
GFI+YPRTE+T YP SFD + S ++P+WG Y +LA Y PR G D GDHP
Sbjct: 352 LSGFITYPRTETTKYPKSFDTKEAASIHKDHPLWGQYTCDILARNYTNPRQDGIDVGDHP 411
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PI P+RS + L D WRLY + +HFL T+SPD K+
Sbjct: 412 PIVPIRSVISNDLAGDNWRLYELITRHFLATISPDIKF 449
>gi|393909566|gb|EFO21893.2| DNA topoisomerase III beta-1 [Loa loa]
Length = 859
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 133/214 (62%), Gaps = 2/214 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQKLFDFDVATMF 70
+GPCQTPTLGFCV R+ IT F+PE +W L + G LK + ++FD DV +F
Sbjct: 215 FGPCQTPTLGFCVTRHDLITQFEPESYWVLETVFETSAGDNLKPIHAKGRIFDKDVCQLF 274
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ + V+D+ + K RP LNTV LL+VASS LG P M AE LYT+GF
Sbjct: 275 FDRIKKQNQGVVVDVDSSEFRKERPQALNTVELLRVASSGLGLSPAQTMNTAEYLYTRGF 334
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
ISYPRTE+TAYPS+FDF L N+ W D V++LL+EG PR+G D GDHPPI+P+
Sbjct: 335 ISYPRTETTAYPSNFDFSEALRHQQNDIRWKDIVKKLLSEGITTPRNGEDKGDHPPISPL 394
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
R + G DA ++Y Y+ QHF+ T+ C Y+
Sbjct: 395 RGNDGSLTG-DALKVYDYIAQHFIATLMKPCTYL 427
>gi|219111227|ref|XP_002177365.1| DNA topoisomerase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411900|gb|EEC51828.1| DNA topoisomerase, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 868
Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 131/216 (60%), Gaps = 1/216 (0%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD- 65
+ +L YGPCQTPTLGFCVQRY+ I +FKPE +W L +++ G L+ W + F+ +
Sbjct: 214 SAVLSYGPCQTPTLGFCVQRYIDIQTFKPEPYWVLELAVMKRGRSLRALWGSGRSFNKNK 273
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
V + + + +V + K + + RP LNTV LLK S ALG GP +Q AERL
Sbjct: 274 VEKLLLEALESGPFAKVTSVVAKDKKQGRPIPLNTVALLKACSKALGIGPHATLQTAERL 333
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
Y G++SYPRTES+AYP SFD GTL +++ WG YV LL EG K R G D GDHP
Sbjct: 334 YLSGYLSYPRTESSAYPKSFDIYGTLQQQSSDVRWGSYVRELLREGPNKSRGGIDMGDHP 393
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
PITP R+ L D R+Y V +HF+ +VS D
Sbjct: 394 PITPCRATRAGELSGDMARVYDLVVRHFIASVSQDA 429
>gi|431914329|gb|ELK15587.1| DNA topoisomerase 3-beta-1 [Pteropus alecto]
Length = 779
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 137/217 (63%), Gaps = 29/217 (13%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 158 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 217
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S+K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 218 QMFLNMTKMEKEAQVEATSKKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 277
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G L AN+P W D V++LL+E
Sbjct: 278 QGYISYPRTETTHYPENFDLKGLLRQQANHPYWADTVKQLLSE----------------- 320
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
G +AW LY Y+ +HF+ TVS DCKY+
Sbjct: 321 -----------GGEAWWLYEYITRHFIATVSYDCKYL 346
>gi|403352748|gb|EJY75891.1| DNA topoisomerase [Oxytricha trifallax]
Length = 1342
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 132/217 (60%), Gaps = 2/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN--GYELKLEWERQKLFDFDV 66
++ YGPCQTPTLGFCV + +I F PE +W++ + G L+W R K++D V
Sbjct: 723 MITYGPCQTPTLGFCVDQAEKIKKFIPEPYWSIETVIADKDRGKSYSLKWGRGKIYDRTV 782
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
T+ + EVID+ + + + +P GLNTV +LKVAS G M+ AE LY
Sbjct: 783 TTIVHSRIACFDSAEVIDVQKSKAVQGKPQGLNTVKMLKVASKTYGMSAHDTMKTAEHLY 842
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
+G+I+YPRTEST Y ++F+F L N WG Y RLL KP+ G DAGDHPP
Sbjct: 843 LRGYITYPRTESTTYSANFNFDEILQQHQQNSEWGSYATRLLNGMMVKPKKGVDAGDHPP 902
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
ITP++SA+ LG+ W+LY+++ ++F G++SPD Y
Sbjct: 903 ITPVKSASRASLGEREWKLYNFITRNFFGSISPDASY 939
>gi|449678511|ref|XP_002155556.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Hydra magnipapillata]
Length = 843
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 130/217 (59%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTL FCVQR+ +I +FK F+ + + G + L+W + + +
Sbjct: 245 VVSYGPCQTPTLWFCVQRHKEIQNFKSTPFYVVSVVVNIQGQNITLKWVNDTVKNAEDLR 304
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ ++ ++ + ++D+ E ++ +P GLNTV LLK S G P AM +AE LYT
Sbjct: 305 QMESIIQRNPVAHIVDVKEDKKVVYKPIGLNTVTLLKSCSKGFGISPTQAMNIAEHLYTS 364
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDHPPI 187
G+ISYPRTE+T YP +FD GTL NNP WG +L G P + G D GDHPPI
Sbjct: 365 GYISYPRTETTRYPPTFDLVGTLEEQVNNPNWGRIAAYILESGRMNPSQKGFDVGDHPPI 424
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPMRSA D + WR+Y YV +HF+GT+ + +YI
Sbjct: 425 TPMRSANRDEFKPNEWRIYDYVTRHFIGTLHDNMEYI 461
>gi|403304311|ref|XP_003942748.1| PREDICTED: DNA topoisomerase 3-beta-1 [Saimiri boliviensis
boliviensis]
Length = 838
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 122/173 (70%)
Query: 52 LKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSAL 111
L L+W+R ++FD ++A M + ++ +V S K+++K RP LNTV +L+VASS+L
Sbjct: 232 LLLDWDRVRVFDREIAQMSLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSL 291
Query: 112 GYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG 171
G GPQ MQ ERLYTQG+ISYPRTE+T P +FD +G L AN+P W D V++LLAEG
Sbjct: 292 GMGPQHTMQTTERLYTQGYISYPRTETTHCPENFDLKGALRQQANHPYWADMVKQLLAEG 351
Query: 172 YAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
+PR G DAG H PITPMRSATE LG DAW L Y+ +HF+ TVS DCKY+
Sbjct: 352 INRPRKGHDAGHHLPITPMRSATEAELGGDAWWLCEYITRHFVATVSHDCKYL 404
>gi|312079442|ref|XP_003142175.1| DNA topoisomerase III beta-1 [Loa loa]
Length = 871
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 133/226 (58%), Gaps = 14/226 (6%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQKLFDFDVATMF 70
+GPCQTPTLGFCV R+ IT F+PE +W L + G LK + ++FD DV +F
Sbjct: 215 FGPCQTPTLGFCVTRHDLITQFEPESYWVLETVFETSAGDNLKPIHAKGRIFDKDVCQLF 274
Query: 71 ---QKLVMQDRILE---------VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
K D V+D+ + K RP LNTV LL+VASS LG P
Sbjct: 275 FDRIKAPYHDSYCSGFQKQNQGVVVDVDSSEFRKERPQALNTVELLRVASSGLGLSPAQT 334
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG 178
M AE LYT+GFISYPRTE+TAYPS+FDF L N+ W D V++LL+EG PR+G
Sbjct: 335 MNTAEYLYTRGFISYPRTETTAYPSNFDFSEALRHQQNDIRWKDIVKKLLSEGITTPRNG 394
Query: 179 TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
D GDHPPI+P+R + G DA ++Y Y+ QHF+ T+ C Y+
Sbjct: 395 EDKGDHPPISPLRGNDGSLTG-DALKVYDYIAQHFIATLMKPCTYL 439
>gi|339245323|ref|XP_003378587.1| DNA topoisomerase 3-beta-1 protein [Trichinella spiralis]
gi|316972491|gb|EFV56168.1| DNA topoisomerase 3-beta-1 protein [Trichinella spiralis]
Length = 819
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 129/222 (58%), Gaps = 3/222 (1%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG--YELKLEWERQKLF 62
V + ++ YGPCQTPTLGFCV R ++ +FKPE +W++ + +G + W RQ+LF
Sbjct: 152 VDSKLISYGPCQTPTLGFCVARLDEMKNFKPEPYWSMRAVVTSDGGGSTMTASWARQQLF 211
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D +V + + R V+ ++ ++ K +P LNTV LL+V SS L GPQ M LA
Sbjct: 212 DQEVFNVLFSRAKRQRFATVVSVTTTKKQKQKPAALNTVELLRVGSSRLHLGPQQTMHLA 271
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
E LYT G ISYPRTE+T Y S+FDF L LA + + + +L G P+SG DAG
Sbjct: 272 EHLYTNGLISYPRTETTRYASNFDFHSVLGPLAKSGQFASVAQAILDRGVRMPKSGQDAG 331
Query: 183 DHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
DHPPITP+ E RLY YV HFL T+ +C Y
Sbjct: 332 DHPPITPLGHVGEPKFTSTSEARLYEYVVCHFLATLMGNCVY 373
>gi|118385846|ref|XP_001026048.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89307815|gb|EAS05803.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1374
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 93/216 (43%), Positives = 139/216 (64%), Gaps = 3/216 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQKLFDFDVA 67
I+ +GPCQTPTLGFCV+R +I +FKP ++ + ++ ++G E+ ++ ++D +
Sbjct: 743 IISFGPCQTPTLGFCVEREDEIKNFKPRLYFRIRATFVTEDGMEVVSYCDKGHIYDQGES 802
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
K V+ + +++ +S +K RP GLNTV LLK+ASS L P M +AERLY
Sbjct: 803 NKIFKDVLNQQHIQITQVSSDFGTKQRPEGLNTVQLLKIASSYLHMSPMETMHVAERLYL 862
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
G+I+YPRTESTAYP +F FR L++L ++ +G + LL + Y +PRSG D GDHPPI
Sbjct: 863 NGYITYPRTESTAYPKAFQFREILNSLQSDSDYGKFASNLLQD-YKQPRSGVDMGDHPPI 921
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
TP + + LG D +LY Y+ +HF+ ++S DCKY
Sbjct: 922 TPT-TNYPNSLGGDERKLYDYISKHFIASLSEDCKY 956
>gi|76156854|gb|AAX27967.2| SJCHGC07190 protein [Schistosoma japonicum]
Length = 164
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 110/157 (70%)
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A++F V + EVI +S KQ+ K RP GLNTV +L+VAS+ LG GP AM +AERLY
Sbjct: 1 ASVFLSRVKASKTAEVIQVSVKQKIKPRPQGLNTVEMLRVASAGLGIGPHDAMAVAERLY 60
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
T G+I+YPRTE+TAYP++FD RG L N+PVWGD +L G PR+G DAGDHPP
Sbjct: 61 TSGYINYPRTETTAYPNTFDLRGLLQQQVNSPVWGDLAREVLHNGLTPPRAGHDAGDHPP 120
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
I PMR A+ LG +++RLY Y+ QHF+ T+ PDC Y
Sbjct: 121 IAPMRFASSQDLGHESYRLYEYIVQHFIATIMPDCCY 157
>gi|384490193|gb|EIE81415.1| hypothetical protein RO3G_06120 [Rhizopus delemar RA 99-880]
Length = 761
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 122/217 (56%), Gaps = 27/217 (12%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+ ++ YGPCQTPTL FCV+R+ +I F+PE FW++ + + L W R+++FD V
Sbjct: 191 STVISYGPCQTPTLSFCVERHDRIQGFQPESFWSIKVTVKNSDTSTNLTWNRERVFDRQV 250
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+F K+ + K ++LG P AM +AERLY
Sbjct: 251 GHLFFKMTEE---------------------------AKGNGASLGISPSEAMSIAERLY 283
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
TQG+ISYPRTE++ YP +FD L AN+P WG Y + LL GY +P G D GDHPP
Sbjct: 284 TQGYISYPRTETSKYPETFDINSVLVQQANHPHWGHYCDDLLKNGYDRPSGGVDVGDHPP 343
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
ITP R A E L D WR+Y +V ++F+G++S KY
Sbjct: 344 ITPTRVALESDLHGDTWRVYDFVARNFIGSISAGLKY 380
>gi|118383692|ref|XP_001025000.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89306767|gb|EAS04755.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1386
Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats.
Identities = 94/217 (43%), Positives = 124/217 (57%), Gaps = 4/217 (1%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYEL-KLEWERQKLFDFDVAT 68
+ +GPCQTPTL FCVQR +I F + F+ + P + EL LEW +++ +D A
Sbjct: 450 ITFGPCQTPTLSFCVQRDDEIKDFISKPFYRIIPKISLVPNELINLEWTKERTYDQQEAL 509
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
++ + V+ + K+ K++P LNTVN LK+AS G GPQ AMQ+AE+LY
Sbjct: 510 DVKQELESIGQTSVVKVDNKETQKIKPVALNTVNFLKMASKQYGLGPQNAMQVAEKLYLG 569
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALA---NNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
GFI+YPRTEST YP FDF L A+ N Y ++L G K R G D GDHP
Sbjct: 570 GFITYPRTESTKYPDKFDFNSVLHAVCQYHQNQNISIYAQKLQQNGIHKSRLGKDVGDHP 629
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PITP L +D +Y VC+HFL TVS DC+
Sbjct: 630 PITPTNKIMRQQLSRDEQNIYELVCRHFLATVSSDCR 666
>gi|145527750|ref|XP_001449675.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417263|emb|CAK82278.1| unnamed protein product [Paramecium tetraurelia]
Length = 949
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 138/218 (63%), Gaps = 3/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I +F P F+T+ ++ N GY+ ++EW Q+++ A
Sbjct: 229 MVTFGPCQTPTLGFCVERHEEIVNFVPRAFYTIKLSILNNVGYKQEVEWLGQQIWKEPEA 288
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + + +VI +Q+SK RP G+NTV+LLK ASS LG GPQ AM +AERLY
Sbjct: 289 KQVVQQLQKFKQGDVISQQVEQKSKPRPEGINTVSLLKFASSYLGLGPQQAMHVAERLYL 348
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALA--NNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
G+ISYPRTE+TAYP F ++ L +P+ ++ + L G++ P+ G D GDHP
Sbjct: 349 NGYISYPRTETTAYPHEFPTPKIINNLQKYKDPLISEHSKYLKTNGHSNPKQGVDVGDHP 408
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PITP + ++ L + +Y YV + FL S DCKY
Sbjct: 409 PITPTENVPQNNLYGEEKTMYEYVVKMFLAAHSKDCKY 446
>gi|146182668|ref|XP_001024996.2| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|146143729|gb|EAS04751.2| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 858
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 92/213 (43%), Positives = 131/213 (61%), Gaps = 6/213 (2%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YGPCQTPTL FCV+R+ +I +FKP+ ++T+ L + +W +++ FD + A
Sbjct: 214 YGPCQTPTLAFCVERHDEIENFKPQTYYTVEVNLSEYA---TAKWSKEQTFDQEEAKKVL 270
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
V Q L V IS Q K RP GLNTVN+L++AS GP A+ +AE LY GFI
Sbjct: 271 SEVQQSNQLMVKSISTVQAIKSRPVGLNTVNMLRIASKKYEIGPHDAIHIAESLYLLGFI 330
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPV--WGDYVERLLAEGYAKPRSGTDAGDHPPITP 189
+YPRTE+T YP FDF+ L A++N+ +Y + LL+E KP G D+GDHPPITP
Sbjct: 331 TYPRTETTKYPGEFDFKSVLHAISNSKFNNMANYAKGLLSEPLNKPYKGVDSGDHPPITP 390
Query: 190 MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
++A + L ++Y VC++FLG++S D +
Sbjct: 391 TQNAPQS-LNPQQMKIYELVCKNFLGSLSQDAQ 422
>gi|300175415|emb|CBK20726.2| unnamed protein product [Blastocystis hominis]
Length = 891
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 124/225 (55%), Gaps = 12/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQ PTLGFCV R+ I +FK E F H L E RQ+ A
Sbjct: 206 VISYGPCQIPTLGFCVDRFDLIQNFKGEAFPRFH---FSPAALLDAERHRQEKLPRSPAL 262
Query: 69 M---------FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+ F + + L V+ + E ++VRP +NTV +LK+AS +LG GP+ A
Sbjct: 263 LGARPASFFVFSRKLASVSSLTVLSVRESNGARVRPVPMNTVTMLKLASRSLGMGPKEAT 322
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
AERLY +G+ISYPRTE+TAYP ++ G + NP WG YV L+A G PR G
Sbjct: 323 VYAERLYLKGYISYPRTETTAYPEHYNLLGAVEQHRTNPRWGGYVNALIAGGLRVPRKGV 382
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
DAGDHPPITP+ S L LY + HFL TVS DCK++
Sbjct: 383 DAGDHPPITPVVSVDPSTLPSGESALYDLIATHFLATVSDDCKFV 427
>gi|346971576|gb|EGY15028.1| DNA topoisomerase [Verticillium dahliae VdLs.17]
Length = 760
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 124/221 (56%), Gaps = 1/221 (0%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+V +I+ YG CQ PTLGF V RY ++ +F PE+FW++H Q G ++K W R +LFD
Sbjct: 202 LVEMIISYGSCQFPTLGFVVDRYFRVKNFVPEQFWSIHVNHTQEGKKVKFAWSRNRLFDR 261
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
T+ + +Q R +V + EK K +P L TV L K A+ L Q AM +AE
Sbjct: 262 MAVTILYERCIQARTAKVTKVQEKPTRKWKPLPLTTVELQKAATRLLRMSGQQAMSVAED 321
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGD 183
LY +GFISYPRTE+ + + R + + WG Y + LL+ +++PR G D
Sbjct: 322 LYNKGFISYPRTETDRFDKEINLRNLVQKQTQSDAWGQYAQDLLSGSFSQPRQGRHDDKA 381
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
HPPI P+ A+ +L DA RLY Y+ + FL S D K +
Sbjct: 382 HPPIHPVTFASPSVLTHDAKRLYEYIVRRFLACCSDDAKGV 422
>gi|412993300|emb|CCO16833.1| predicted protein [Bathycoccus prasinos]
Length = 949
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 138/253 (54%), Gaps = 35/253 (13%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL---------------- 45
F + + YGPCQTPTLGFCV+R+L+I F PE FW L L
Sbjct: 235 FSGFDSRCVSYGPCQTPTLGFCVKRHLEIIRFVPESFWRLKLNLPTVAAASLKQSDDDVV 294
Query: 46 ---VQNG-------YEL-KLEWERQKLFDFDVATMFQKLV-----MQDRILEVIDISEKQ 89
NG YE+ + +W R+++FD A + L +D+ ++ +
Sbjct: 295 IVDDDNGMATKTTSYEIAEWKWHRERVFDESSAISLEALCSDFLKKKDKKGTLVGTIRSK 354
Query: 90 ESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRG 149
+SK P G+NTV +LK S +G G AMQ+AERLY GFISYPRTES+AYP FDF+
Sbjct: 355 QSKRPPPGMNTVEMLKTCSK-MGIGAHRAMQIAERLYLDGFISYPRTESSAYPPGFDFKS 413
Query: 150 TLSALANNPVWGDYVERLLA-EGYAKPRSGTDAGDHPPITPM-RSATEDMLGKDAWRLYS 207
+++ +N WGD +++L+ KP G DAGDHPPITP R + + + +R+Y
Sbjct: 414 IVASQTSNDEWGDVAKKILSFSSIRKPSGGQDAGDHPPITPAGRFGNRNSMNGEMFRVYE 473
Query: 208 YVCQHFLGTVSPD 220
+ +HFL T+ PD
Sbjct: 474 LISRHFLATLLPD 486
>gi|156084162|ref|XP_001609564.1| DNA topoisomerase [Babesia bovis T2Bo]
gi|154796816|gb|EDO05996.1| DNA topoisomerase, putative [Babesia bovis]
Length = 878
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 123/222 (55%), Gaps = 12/222 (5%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YGPCQTPTL FCV RY I F+ E ++ L + G + W R ++FD VA +FQ
Sbjct: 228 YGPCQTPTLFFCVDRYNAIARFQEEPYYKLICDISYEGQYIPFTWNRGRIFDKSVARIFQ 287
Query: 72 KLVMQDRILEVI-----------DISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
+LV ++ ++ DI K+ P LNTV +LK ASS G GP MQ
Sbjct: 288 QLVRCEKYYNILQLMGANKGVLTDIVTKRSINSSPKALNTVTMLKEASSRFGMGPHKTMQ 347
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYA-KPRSGT 179
AE LY G+ISYPRTE+ YP+SFD+ L L P + + V+ L+ G P+ G
Sbjct: 348 TAEHLYLNGYISYPRTETDCYPTSFDWAELLKKLHTVPEYTNLVDLLMQSGNTLGPQGGH 407
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
D GDHPPI P+R ++ L D W+LY + +HFL +V+ C
Sbjct: 408 DVGDHPPIIPVRCVSQGTLTGDDWKLYDLIVRHFLASVAGPC 449
>gi|340508777|gb|EGR34411.1| hypothetical protein IMG5_012580 [Ichthyophthirius multifiliis]
Length = 789
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 91/222 (40%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLE--WERQKLFDFDV 66
++ YGPCQTPTLGFCV+R +I SFKP+ F+ L + ++ + +E +F+
Sbjct: 263 MITYGPCQTPTLGFCVRREDEIKSFKPKLFYRLLIQFRKKDEQIDTQAVFENGNIFNQQE 322
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A +++ + +V D+ ++ K RP GLNTV LLK+ SS L PQ M +AE+LY
Sbjct: 323 ANSLLTKIIKQKEGQVFDVFSEKGIKGRPEGLNTVQLLKMGSSYLHLSPQQTMHVAEKLY 382
Query: 127 TQGFISYPRTESTAYPSSFDFRG---TLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
QGFI+YPRTEST+Y +F F +L L N+ V D + L G KP+ G D GD
Sbjct: 383 LQGFITYPRTESTSYAKNFPFEDICRSLCQLKNSQVSQD-AQLLFRNGIYKPKQGVDIGD 441
Query: 184 HPPITPMRSA-TEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
HPPITP + + L + LY YVC+HF+ ++S DC ++
Sbjct: 442 HPPITPTNYVPSNNQLRNEESNLYEYVCKHFMASISADCSFM 483
>gi|302406450|ref|XP_003001061.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
gi|261360319|gb|EEY22747.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
Length = 658
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 120/218 (55%), Gaps = 1/218 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L++ G CQ PTLGF V RY ++ +F EKFW++H Q G ++K W R +LFD
Sbjct: 224 LLMNPGSCQFPTLGFVVDRYFRVKNFVAEKFWSIHVNHTQEGKKVKFAWSRNRLFDRMAV 283
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
T+ + +Q R +V + EK K +P L TV L K A+ L Q AM +AE LY
Sbjct: 284 TILYERCIQARTAKVTKVQEKPTRKWKPLPLTTVELQKAATRLLRMSGQQAMSVAEDLYN 343
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ + + R + + WG Y + LL+ +++PR G D HPP
Sbjct: 344 KGFISYPRTETDRFDKEINLRNLVQKQTQSDAWGPYAQDLLSGSFSQPRQGRHDDKAHPP 403
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
I P+ A+ +L DA RLY Y+ + FL S D K +
Sbjct: 404 IHPVTFASPSVLTHDAKRLYEYIVRRFLACCSDDAKGV 441
>gi|118389870|ref|XP_001027980.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89309750|gb|EAS07738.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 916
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 87/221 (39%), Positives = 128/221 (57%), Gaps = 12/221 (5%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-----ERQKLFDFDV 66
+GPCQTPTLGFCV+R QI F P + + L G + K + +++ L
Sbjct: 416 FGPCQTPTLGFCVEREDQIKKFIPSLLYKVK--LTLQGSDNKTQMLAYSEQKETLSKEKA 473
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+FQ + ++ I +++ +S + + P GLNTV +LK ASS+L PQ M AE LY
Sbjct: 474 QYIFQSIKLEKHI-QIVSVSSETLVEECPVGLNTVEMLKAASSSLNMSPQQTMDAAENLY 532
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
+GFI+YPRTESTAY SSF+F+ LS+L + +G + + LL +GY P+ G D DHPP
Sbjct: 533 LKGFITYPRTESTAYSSSFNFKKVLSSLQQDIEYGKFAQNLLNDGYIIPQKGNDTEDHPP 592
Query: 187 ITPM----RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
ITP R E ++ +LY Y+ +HF+ ++ D +Y
Sbjct: 593 ITPTSNYPRPENEGLISPQEKQLYDYISKHFIASLYDDYEY 633
>gi|428178558|gb|EKX47433.1| hypothetical protein GUITHDRAFT_50898, partial [Guillardia theta
CCMP2712]
Length = 596
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 129/222 (58%), Gaps = 6/222 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH---PYLV--QNGYELKLEWERQKLFD 63
+L +GPCQTPTL FCV+R +I F P KFW + LV L L+W R FD
Sbjct: 212 LLSFGPCQTPTLFFCVRRDEEIRRFVPRKFWRIEVEVEVLVGGSRSRTLDLKWMRGSTFD 271
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ A + + Q ++ + +K+ S P LNTV LL++AS LG+ P M +AE
Sbjct: 272 RNQALLALRSCQQTSHARLVRVEKKERSLDPPLPLNTVALLQLASLRLGFSPAKTMAIAE 331
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDAG 182
RLYT+G+ISYPRTE++ +P SFD L L + G +VE++L EG + P G D G
Sbjct: 332 RLYTRGYISYPRTETSRFPPSFDPSDLLRPLVDGSQLGRFVEKMLEEGCVSVPSRGVDRG 391
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
DHPPITPM+S + LG++ RL+ V + + ++ P +++
Sbjct: 392 DHPPITPMKSGSMGSLGREERRLWELVASNTVASLMPTFRFL 433
>gi|427782477|gb|JAA56690.1| Putative dna topoisomerase iii beta [Rhipicephalus pulchellus]
Length = 669
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 127/217 (58%), Gaps = 6/217 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY I +F PE FW + ++G + + W+R +LFD+ V
Sbjct: 206 LVSYGSCQFPTLGFVVERYRAILNFVPEPFWKIEMNHSKDGIKAEFSWKRHRLFDYHVCF 265
Query: 69 MFQKLVMQDR--ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ + + +V+++ K +SK RP ++TV L K+AS L + MQ+AE+LY
Sbjct: 266 LLYERCLHGNPPQAKVVEVKSKPKSKWRPQPMDTVELEKLASRKLRMSAKDTMQVAEKLY 325
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HP 185
T GFISYPRTE+T +P + R + A A +P WGD+ RLL +G PR G HP
Sbjct: 326 TDGFISYPRTETTKFPPDLNLRPLVEAQAQDPRWGDFARRLLQDGLT-PRQGNKTDQAHP 384
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P++SA L +A R+Y V +HFL +S D +
Sbjct: 385 PIHPVKSAP--GLDGNAKRVYELVVRHFLACLSKDAE 419
>gi|358255314|dbj|GAA57027.1| DNA topoisomerase III, partial [Clonorchis sinensis]
Length = 1106
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 131/221 (59%), Gaps = 6/221 (2%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ ++ YG CQ PTLGF V+R+ ++ F PE FW + NG + +W+R +LFD
Sbjct: 173 ALSNQLISYGSCQFPTLGFVVERFREVDRFIPEPFWRIVVTAEYNGKAVDFQWKRGRLFD 232
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
D + + ++++R +V+++ ++ +SK+RP L+TV L K+A+ L G + MQLAE
Sbjct: 233 HDACKAYYEHLLENRYGQVVEVVKRPKSKLRPVALDTVELEKLATRKLRIGAKAVMQLAE 292
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG--TDA 181
RLYT+GFISYPRTE+ +P + D + ++ W D+ R+L G PR+G TD
Sbjct: 293 RLYTRGFISYPRTETNIFPPNLDLAELVRVQTHDNRWSDFASRILRTG-VNPRNGKSTDK 351
Query: 182 GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+++ L D RL+ + +HFL +S D +
Sbjct: 352 A-HPPIHPLKAGA--GLQGDEARLFELITRHFLACISADAQ 389
>gi|353233151|emb|CCD80506.1| putative prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1058
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 128/220 (58%), Gaps = 4/220 (1%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ ++ YG CQ PTLGF V+R+ ++ F E FW + + ++ + +W+R +LFD
Sbjct: 225 ALSDQLISYGSCQFPTLGFVVERFREVDQFVSEPFWRIVVTVSRDEKTTEFQWQRGRLFD 284
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
D + + + Q+R +++++ ++ ++K RP L+TV L K+AS L G + AMQLAE
Sbjct: 285 QDCCRAYYEHLNQNRYGQIVEVIKRPKTKWRPTALDTVELEKLASRKLQMGAKYAMQLAE 344
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
RLY +GFISYPRTE+ +P D + + N+ W D+ R+L G P++G +
Sbjct: 345 RLYNKGFISYPRTETKIFPPDLDLKSLVHVQINDSRWSDFATRILERG-PNPKNGKSSDK 403
Query: 184 -HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P++ D L D RLY V +HFL +S D +
Sbjct: 404 AHPPIHPLKVG--DSLQGDEARLYELVTRHFLACLSTDAE 441
>gi|256052304|ref|XP_002569713.1| prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1165
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 128/220 (58%), Gaps = 4/220 (1%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ ++ YG CQ PTLGF V+R+ ++ F E FW + + ++ + +W+R +LFD
Sbjct: 225 ALSDQLISYGSCQFPTLGFVVERFREVDQFVSEPFWRIVVTVSRDEKTTEFQWQRGRLFD 284
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
D + + + Q+R +++++ ++ ++K RP L+TV L K+AS L G + AMQLAE
Sbjct: 285 QDCCRAYYEHLNQNRYGQIVEVIKRPKTKWRPTALDTVELEKLASRKLQMGAKYAMQLAE 344
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
RLY +GFISYPRTE+ +P D + + N+ W D+ R+L G P++G +
Sbjct: 345 RLYNKGFISYPRTETKIFPPDLDLKSLVHVQINDSRWSDFATRILERG-PNPKNGKSSDK 403
Query: 184 -HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P++ D L D RLY V +HFL +S D +
Sbjct: 404 AHPPIHPLKVG--DSLQGDEARLYELVTRHFLACLSTDAE 441
>gi|452989907|gb|EME89662.1| hypothetical protein MYCFIDRAFT_193524 [Pseudocercospora fijiensis
CIRAD86]
Length = 773
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 116/216 (53%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQ PTLGF V+RY ++ +F PE FW + ++G ++K W RQ LF+ +
Sbjct: 314 VISYGPCQFPTLGFVVERYFRVQNFVPEPFWGIKVMHEKDGVKVKFNWARQHLFNRMIVV 373
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + R+ V + K SK RP L TV L K S L Q M +AE LY +
Sbjct: 374 ILFERCLHARLARVTKVQTKPTSKWRPLPLTTVELQKCGSRFLRLNSQTVMNIAEGLYQR 433
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALAN-NPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
GFISYPRTE+ + + + + AN W Y + L+ G+ +PR+G + HPP
Sbjct: 434 GFISYPRTETDQFDRGMNLQAIVQKQANGQAAWSQYAQHLMNGGFVQPRNGNHNDKAHPP 493
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ A +L D R+Y +VC+ FL S D K
Sbjct: 494 IHPVNFAAASVLSSDERRVYEFVCRRFLACCSDDAK 529
>gi|340959518|gb|EGS20699.1| DNA topoisomerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 625
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 1/216 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L + YG CQ PTLGF V RY ++ +F PE FW++ ++G ++ W R +LFD
Sbjct: 206 LTISYGSCQFPTLGFVVDRYFRVKNFIPEPFWSIKVMHERDGIKVNFNWARHRLFDRMTV 265
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + + + +V+ + EK+ K +P L TV L K+A+ LG Q AM +AE+LY
Sbjct: 266 IIFYERCLTAKFAKVMKVKEKETKKWKPLPLTTVELQKMATRFLGMTGQQAMTVAEKLYN 325
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ + D + + + WG + + LL G+ +PR G D HPP
Sbjct: 326 KGFISYPRTETDRFDKGMDLKALVRKQTQDQRWGQFAQHLLDGGFQQPRQGKHDDKAHPP 385
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ A+ +L R+Y V + FL S D K
Sbjct: 386 IHPITYASPSVLDDQEKRIYELVTRRFLACCSEDAK 421
>gi|170093393|ref|XP_001877918.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647777|gb|EDR12021.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 716
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L YGPCQ PTLGF VQRY ++ +F+PE FW ++ L ++G E K W+ LFD A
Sbjct: 201 VLSYGPCQFPTLGFVVQRYNRVKAFRPETFWYIYLSLTRDGEETKFTWKEGHLFDQGGAA 260
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
++V+Q+ VI +++K K +P L TV L K S L P+ + +AE+LY Q
Sbjct: 261 RIYEIVLQNPRARVIRVTKKDTKKWKPLPLTTVELQKAGSRLLKLAPKKVLDVAEKLYQQ 320
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GF+SYPRTE+ + FDF + +P WG++ G+ PR G + HPPI
Sbjct: 321 GFVSYPRTETDQFDPQFDFMTLIGKQTVDPAWGEFARTYQNGGFGVPRKGKNNDKAHPPI 380
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P A +++G D ++Y Y+ + FL S D +
Sbjct: 381 HPTAHAG-NLVG-DEKKVYEYITRRFLACCSKDAE 413
>gi|268572957|ref|XP_002641457.1| C. briggsae CBR-TOP-3 protein [Caenorhabditis briggsae]
Length = 753
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF RY I +F E FW L + G++++ W+R +LFD DV
Sbjct: 210 VISYGSCQFPTLGFVTDRYKLIENFISEPFWKLAVEHTREGHKVEFLWDRNRLFDRDVVD 269
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + V +++K +SK RP L+TV L K+ S L + MQ+AE+LY++
Sbjct: 270 ILHDECKEAKEAHVEKVTKKPKSKWRPQALDTVELEKLGISKLRMSAKQTMQVAEKLYSK 329
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P + + + WGD+ +L +G PR+G + + HPPI
Sbjct: 330 GFISYPRTETNKFPPGLNLTPLVEQQVQSTTWGDFATEVLQKGVT-PRNGHKSDEAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ A ++ L D W++Y V +HFL VS D +
Sbjct: 389 HPLTFADKNTLHGDDWKVYELVVRHFLACVSQDAQ 423
>gi|145345003|ref|XP_001417013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577239|gb|ABO95306.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 641
Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 121/218 (55%), Gaps = 8/218 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YGPCQ PTLGF VQR I + E FW + + G + EW R +LFD A+
Sbjct: 222 IVSYGPCQFPTLGFIVQRKWDIDAHVSEDFWAIKCSHSREGTTTQFEWSRGRLFDRAFAS 281
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
L ++ VID+ ++ + P LNT+ + K + L P+ M++AE LY
Sbjct: 282 ALHDLCVRANSATVIDVDGQESKRWPPHPLNTIEMQKRLNRVLRISPEQIMKIAEDLYND 341
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGT-DAGDHPP 186
GFISYPRTE+ +P+ FD+ GTL + +P +G YVERL G + +P GT D HPP
Sbjct: 342 GFISYPRTETDKFPNDFDYDGTLREMHQHPQFGFYVERLTTGGQFRRPPGGTKDDKAHPP 401
Query: 187 ITPMRSATEDMLGK------DAWRLYSYVCQHFLGTVS 218
I P + AT+ + +A ++Y +VC+HFL T S
Sbjct: 402 IYPTKLATDAQYAQMRNKNHNAPKVYEFVCRHFLATCS 439
>gi|440291485|gb|ELP84754.1| DNA topoisomerase 3-beta-1, putative [Entamoeba invadens IP1]
Length = 853
Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 129/217 (59%), Gaps = 12/217 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCVQRY I +F P+ ++ + + +G KL+ E + FD
Sbjct: 202 LVSFGPCQTPTLGFCVQRYKDILNFVPKAYYIVKVNVNDLSGRSKKLKLENR----FDDK 257
Query: 68 TMFQKLVMQDR----ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
++ + R I++ ++++E ++S RP GLNTV +LK AS LG P M +AE
Sbjct: 258 AKADAVLEECRSCSGIVKKMNVTESRKS--RPTGLNTVEMLKGASLRLGMSPSDTMHIAE 315
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
+LYTQG+ISYPRTEST + F F L+ L ++ + + V+ + A G P+ G D GD
Sbjct: 316 KLYTQGYISYPRTESTKFSQHFGFDSILAELGSSTQFAEKVQLVRANGINVPKGGEDKGD 375
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPITP+ + + LG RLY Y+C FL ++ D
Sbjct: 376 HPPITPL-TYPQFALGDGEMRLYQYICNSFLASLYKD 411
>gi|224070273|ref|XP_002189800.1| PREDICTED: DNA topoisomerase 3-alpha [Taeniopygia guttata]
Length = 1009
Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 122/215 (56%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F+ + + W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEAFYKIKVTHDHEDGSVVFNWKRNRLFNHTACL 297
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ ++ M+D + V+D+ K +SK RP L+TV L K+AS L + M +AE+LYT+
Sbjct: 298 VLYQMCMEDPVATVVDVVSKPKSKWRPLPLDTVELEKLASRKLKINAKETMTIAEKLYTK 357
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P + + +P WG + +R+L +G PRSGT + HPPI
Sbjct: 358 GFISYPRTETNIFPKELNLSALVEQQTQDPNWGGFAQRILDQGGPTPRSGTKSDQAHPPI 417
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + T ++ G + RLY ++ +HFL S D K
Sbjct: 418 HPTK-YTSNLQGNEQ-RLYEFIVRHFLACCSQDAK 450
>gi|71894753|ref|NP_001025807.1| DNA topoisomerase 3-alpha isoform 1 [Gallus gallus]
gi|66796185|dbj|BAD99110.1| topoisomerase III alpha [Gallus gallus]
Length = 1020
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 122/215 (56%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F+ + + W+R +LF+
Sbjct: 240 LISYGSCQFPTLGFVVERFKAIQAFVPEAFYKIKVTHDHEDGNVVFNWKRNRLFNHTACL 299
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + M+D I V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 300 VLYHMCMEDPIATVVEVGSKPKSKWRPLPLDTVELEKLASRKLKINAKETMRIAEKLYTQ 359
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P + + +P WG + +R+L +G PR+GT + HPPI
Sbjct: 360 GFISYPRTETNIFPKELNLSALVQHQTQDPNWGAFAQRILDQGGPTPRNGTKSDQAHPPI 419
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + T ++ G + RLY ++ +HFL S D K
Sbjct: 420 HPTKY-TANLQGNEQ-RLYEFIVRHFLACCSQDAK 452
>gi|358391864|gb|EHK41268.1| hypothetical protein TRIATDRAFT_249816 [Trichoderma atroviride IMI
206040]
Length = 663
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 114/216 (52%), Gaps = 1/216 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L+L YG CQ PTLGF V RY ++ +F PE FW + ++G +++ W R +LFD A
Sbjct: 202 LVLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWGISLTHNKDGKQVRFSWARNRLFDRMTA 261
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + + +V + EK K +P L TV L K A+ L Q AM +AE LY
Sbjct: 262 VLLYERCLDAKKAKVTKVQEKPTRKFKPLPLTTVELQKAATRLLRMSGQQAMTIAEGLYN 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ + + R + + WG + + L+ G+ +PR G D HPP
Sbjct: 322 KGFISYPRTETDRFDKGMNLRALVQKQTTDQRWGPFAQGLVNGGFQQPREGRHDDKAHPP 381
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ +L D RLY YV + FL S D K
Sbjct: 382 IHPIAHVAPSVLSHDEGRLYEYVTRRFLACCSEDAK 417
>gi|397627399|gb|EJK68461.1| hypothetical protein THAOC_10357, partial [Thalassiosira oceanica]
Length = 1051
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 132/242 (54%), Gaps = 24/242 (9%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKLEW-----ERQ 59
T ++ YGPCQTP L FC+ R +I F P+ +W L + +G L+W E
Sbjct: 513 ATRMISYGPCQTPALSFCIDRMREIEGFTPQVYWKLSCSAKMVDGSTQSLKWLGLVDEAD 572
Query: 60 KLFDF--------DVATMFQKL------VMQDRILEVIDISEKQESKVRPCGLNTVNLLK 105
+ D D AT +K + + L V ++ ES P GLNTV LL+
Sbjct: 573 TVLDTRNKNSQGEDSATFNEKAAREVINLAKHSNLVVTKVTRSDESISPPLGLNTVALLE 632
Query: 106 VASSALGYGPQMAMQLAERLYTQGFISYPRTESTAY-PSSFDFRGTLSALANNPVWGDYV 164
V S A+G P+ M++AE LY+ GFISYPRTE+T Y P FD + L +++P WG
Sbjct: 633 VGSKAMGMSPKGLMKVAETLYSSGFISYPRTETTRYDPIGFDAKSLLRQHSSHPDWGKSA 692
Query: 165 ERLLAEGYAK--PRSGTDAGDHPPITPMRSATEDMLGKD-AWRLYSYVCQHFLGTVSPDC 221
L+ + P G DAGDHPPITP++SAT + +G AWR+Y +V ++F+G++ D
Sbjct: 693 SYLVRTRKSNRPPSRGFDAGDHPPITPLKSATRNQIGGGAAWRVYEFVTRNFIGSLHNDL 752
Query: 222 KY 223
K+
Sbjct: 753 KF 754
>gi|449281375|gb|EMC88455.1| DNA topoisomerase 3-alpha [Columba livia]
Length = 1016
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 119/215 (55%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F+ + + W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEAFYKIKVTHDHEDGSVVFNWKRNRLFNHTACL 297
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ ++ M+D + V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 298 VLYQICMEDPVATVVEVGSKPKSKWRPLPLDTVELEKLASRKLKINAKETMRIAEKLYTQ 357
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P + + +P WG + +R+L +G PR GT + HPPI
Sbjct: 358 GFISYPRTETNIFPKELNLSALVQQQTQDPNWGAFAQRILDQGGPTPRRGTKSDQAHPPI 417
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + A L RLY ++ +HFL S D K
Sbjct: 418 HPTKYAAN--LQGSEQRLYEFIVRHFLACCSQDAK 450
>gi|326929014|ref|XP_003210667.1| PREDICTED: DNA topoisomerase 3-alpha-like [Meleagris gallopavo]
Length = 1020
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 122/215 (56%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F+ + + W+R +LF+
Sbjct: 240 LISYGSCQFPTLGFVVERFKAIQAFVPEAFYKIKVTHDHEDGNVVFNWKRNRLFNHTACL 299
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + M+D + V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 300 VLYHMCMEDPVATVVEVGSKPKSKWRPLPLDTVELEKLASRKLKINAKETMRIAEKLYTQ 359
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P + + +P WG + +R+L +G PR+GT + HPPI
Sbjct: 360 GFISYPRTETNIFPKELNLSALVQHQTQDPNWGAFAQRILDQGGPTPRNGTKSDQAHPPI 419
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + T ++ G + RLY ++ +HFL S D K
Sbjct: 420 HPTKY-TANLQGNEQ-RLYEFIVRHFLACCSQDAK 452
>gi|322707318|gb|EFY98897.1| DNA topoisomerase III [Metarhizium anisopliae ARSEF 23]
Length = 680
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 117/216 (54%), Gaps = 1/216 (0%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+L L YG CQ PTLGF V RY ++ +F PE FW++ ++G ++ WER +LFD
Sbjct: 224 SLTLSYGSCQFPTLGFVVDRYFRVKNFIPEPFWSISLMHNRDGKKVNFSWERNRLFDRMT 283
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ + + + +VI++ E+ K +P L TV L K A+ L Q AM +AE LY
Sbjct: 284 TIILYERCLLAKTAKVINVQERATRKYKPLPLTTVELQKAATRLLRMSGQQAMMVAEGLY 343
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHP 185
+GFISYPRTE+ + + +G + + + WG + + L+ + +PR G D HP
Sbjct: 344 NKGFISYPRTETDRFDKGMNLKGLVQKQSPDQRWGQFAQNLVNGAFKQPREGRHDDKAHP 403
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
PI P+ A +L D RLY YV + FL S D
Sbjct: 404 PIHPITYAAPSVLSPDEGRLYEYVVRRFLACCSEDA 439
>gi|209875815|ref|XP_002139350.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
gi|209554956|gb|EEA05001.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
Length = 843
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 10/221 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKLF 62
L YGPCQ PTLGF V RY +I SFK E FW + L + + +K +W R ++F
Sbjct: 260 LSYGPCQFPTLGFVVDRYRKIVSFKSEPFWQISVTLSFHSEDGSLKDKLIKFDWIRDRIF 319
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D A + + ++D I V+ + KQ +P +NTV + K+AS L P M +A
Sbjct: 320 DHLAALVIYEFCLEDPIATVVSVHGKQVRNYKPLPMNTVEMTKIASIKLNIPPITTMNIA 379
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA-EGYAKPRSGTDA 181
E LY +G+ISYPRTE+ ++P S D + + N+ WG Y L++ + Y PR G +
Sbjct: 380 ENLYQKGYISYPRTETNSFPESMDLKVIIREQINHQTWGRYASLLISNDKYCNPRCGNSS 439
Query: 182 GD-HPPITPMRSATED-MLGKDAWRLYSYVCQHFLGTVSPD 220
+ HPPI P++ ++ + W+LY + +HFL S D
Sbjct: 440 DESHPPIHPVKCLDQNEATSAEEWKLYELITRHFLAVCSDD 480
>gi|378729744|gb|EHY56203.1| DNA topoisomerase III [Exophiala dermatitidis NIH/UT8656]
Length = 625
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 115/215 (53%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RY ++ +FKPE FW++ V+ G ++ W R LFD V T
Sbjct: 209 MISYGSCQFPTLGFVVDRYNRVRNFKPELFWSIKLVQVRAGIKVNFNWRRVHLFDRAVVT 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + V + K SK RP L TV L K+ S L M +AE+LYT+
Sbjct: 269 ILFEACLDAKYARVTKVQTKPTSKWRPLPLTTVELQKLGSRFLHMTSHQVMSVAEKLYTK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P F F+ + + WG Y + LL G+ PRSG+ HPPI
Sbjct: 329 GFISYPRTETDQFPQGFGFQPIIERQTRDDRWGRYAQGLLDGGFRTPRSGSHNDQAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ A L + ++Y +V + FL S D K
Sbjct: 389 HPVNYAAPSALDQHEKKVYEFVTRRFLACCSEDAK 423
>gi|336273746|ref|XP_003351627.1| TOP3 protein [Sordaria macrospora k-hell]
gi|380095906|emb|CCC05953.1| putative TOP3 protein [Sordaria macrospora k-hell]
Length = 603
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 117/216 (54%), Gaps = 1/216 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L+L YG CQ PTLGF V RY ++ +F PE FW++ + G ++ W R +LFD
Sbjct: 151 LVLSYGSCQFPTLGFVVDRYFRVRNFVPEPFWSIKVMHEKEGAKVHFNWSRNRLFDRLSV 210
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + + +I +V DI EKQ K +P L TV L K+A+ L Q AM +AE+LY
Sbjct: 211 LIFYERCLAAKIAKVTDIKEKQTKKWKPLPLTTVELQKMATRFLRMTGQEAMTVAEKLYQ 270
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPP 186
+GFISYPRTE+ + + R + + WG + L+ + +PR G D HPP
Sbjct: 271 KGFISYPRTETDRFDKGMNLRALVQKHTQDHRWGPFAHNLVDGAFQQPRQGKNDDKAHPP 330
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ A +L + +LY +V + FL S D +
Sbjct: 331 IHPITYAAPTVLDEQERKLYEFVVRRFLACCSEDAR 366
>gi|156087759|ref|XP_001611286.1| DNA topoisomerase family protein [Babesia bovis]
gi|154798540|gb|EDO07718.1| DNA topoisomerase family protein [Babesia bovis]
Length = 633
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 122/213 (57%), Gaps = 3/213 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L YGPCQ PTLGF V R+ +I SF+PE FW++ ++ G + W+R KLFD
Sbjct: 215 VLSYGPCQLPTLGFVVDRFFKIESFQPESFWSIQVFIESGGKDYLFRWDRVKLFDRLAVL 274
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +++ + +V +S + + P L+TV + K A+ L +M+LAE LY +
Sbjct: 275 TLYEACLENPMAKVTHVSNRSTKRYPPLPLDTVEMHKDAAMHLKISSHESMRLAESLYNK 334
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G++SYPRTE+ +PSS + R + +++P++G+Y RLL +G PR G + HPPI
Sbjct: 335 GYVSYPRTETNVFPSSMNLRDLVGMFSSHPLFGEYANRLL-QGEIIPRKGNKNDEAHPPI 393
Query: 188 TPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSP 219
P++ E+ +W LY Y+ + FL SP
Sbjct: 394 HPVKPLRREEAESPQSWDLYVYITRRFLACCSP 426
>gi|443692088|gb|ELT93762.1| hypothetical protein CAPTEDRAFT_193082 [Capitella teleta]
Length = 934
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 128/216 (59%), Gaps = 5/216 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKLEWERQKLFDFDVA 67
++ YG CQ PTLGF V+RY Q+ +F PE FW + + +Q+ ++ W R +LFD++
Sbjct: 206 LISYGSCQFPTLGFVVERYKQVQAFIPEPFWKIKVSHDLQDDGFIEFSWRRGRLFDYEAC 265
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + V+++ + V+++ +K +SK RP L+TV L K+AS L + M++AE+LYT
Sbjct: 266 LVLYEHVIENPLATVLEVKKKPKSKWRPVALDTVELEKLASRKLRINAKETMKIAEKLYT 325
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
QGFISYPRTE+ +P + R + N+ WG++ +L +G PR+G HPP
Sbjct: 326 QGFISYPRTETNIFPKDLNLRNLIQQQVNDQDWGEFAGHILEDG-PNPRNGNKTDQAHPP 384
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P + T + G + R+Y +V +HFL S D +
Sbjct: 385 IHPTK-YTNGLQGNEK-RVYEFVVRHFLACCSKDAQ 418
>gi|121710650|ref|XP_001272941.1| DNA topoisomerase III, putative [Aspergillus clavatus NRRL 1]
gi|119401091|gb|EAW11515.1| DNA topoisomerase III, putative [Aspergillus clavatus NRRL 1]
Length = 629
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 118/221 (53%), Gaps = 1/221 (0%)
Query: 3 VAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLF 62
A+ I+ YG CQ PTLGF V RYL++ +FKPE FW + VQ G ++ W R LF
Sbjct: 204 AALTDKIISYGSCQFPTLGFVVDRYLRVKNFKPETFWGIKVMHVQEGMKVNFLWRRVHLF 263
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D V T+ + + + +V +++K SK RP L TV+L + S L Q M++A
Sbjct: 264 DRAVVTVMMERCLLAKKAKVTKVNQKPTSKWRPLPLTTVDLQMMGSRYLRMDSQKVMRIA 323
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
E LYT+GFISYPRTE+ + D + + + WGDY L+ + PRSG +
Sbjct: 324 EALYTKGFISYPRTETDQFDKGIDLKKLIEKQFPDGNWGDYARGLINGAFKTPRSGKNND 383
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ + L D ++Y +V + FL S D K
Sbjct: 384 QAHPPIHPVCWVSPSALSADEKKVYEFVVRRFLACCSDDAK 424
>gi|17555378|ref|NP_499558.1| Protein TOP-3 [Caenorhabditis elegans]
gi|6686028|sp|O61660.1|TOP3_CAEEL RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|3047013|gb|AAC13567.1| DNA topoisomerase III [Caenorhabditis elegans]
gi|14530655|emb|CAB60518.2| Protein TOP-3 [Caenorhabditis elegans]
Length = 759
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 119/215 (55%), Gaps = 2/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF RY I +F E FW L + ++++ W+R +LFD D
Sbjct: 210 VISYGSCQFPTLGFVTDRYKMIENFVSEPFWKLIVEHTRESHKVEFLWDRNRLFDRDTVD 269
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + V +++K +SK RP L+TV L K+ S L + MQ+AE+LY++
Sbjct: 270 ILHDECKETKEAHVEKVAKKPKSKWRPQALDTVELEKLGISKLRMSAKQTMQVAEKLYSK 329
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P+ + + + +WGD+ +L G PR+G + + HPPI
Sbjct: 330 GFISYPRTETNKFPAGLNLTPLVQQQTQSNIWGDFANEVLQNG-VNPRNGRKSDEAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ + L D W++Y V +HFL VS D +
Sbjct: 389 HPLKFTEKHQLQGDDWKVYELVVRHFLACVSQDAQ 423
>gi|341880276|gb|EGT36211.1| CBN-TOP-3 protein [Caenorhabditis brenneri]
Length = 763
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 120/215 (55%), Gaps = 2/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF RY I +F E FW L + ++++ W+R +LFD D
Sbjct: 210 VISYGSCQFPTLGFVTDRYKMIENFISEPFWKLVVEHTRETHKVEFLWDRVRLFDRDTVE 269
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + V +++K +SK RP L+TV L K+ S L + MQ+AE+LY++
Sbjct: 270 VLHEDCNEAKEAVVEKVTKKPKSKWRPQALDTVELEKLGISKLRMSAKQTMQVAEKLYSK 329
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P+ D R + N+ +WGD+ +L G PR+G + + HPPI
Sbjct: 330 GYISYPRTETNKFPAGLDLRPLVQQQTNSGIWGDFANEVLQNGI-NPRNGRKSDEAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ L D W++Y V +HFL VS D +
Sbjct: 389 HPLSFVDRTQLQGDDWKVYELVVRHFLACVSQDAQ 423
>gi|452823186|gb|EME30198.1| DNA topoisomerase III alpha [Galdieria sulphuraria]
Length = 853
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 126/231 (54%), Gaps = 18/231 (7%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKL 61
F ++ + ++ YGPCQTPTLGFCV R +I+ F PE F+ + + +N R K+
Sbjct: 206 FSSLDSKLVSYGPCQTPTLGFCVGRLDEISKFSPETFFLVVVNVRKNNRTTNWYSSRGKI 265
Query: 62 FDFDVATMFQKLVMQDRIL--------EVIDISEKQESKVRPCGLNTVNLLKVASSALGY 113
F+ VA+ + +RI ++ID + +E + RP LNTV LLK+AS L
Sbjct: 266 FERKVAS-----AIVERINSYSSGISGKIIDRTTSKERRHRPLPLNTVELLKLASKRLKM 320
Query: 114 GPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYA 173
P Q+AE LYTQG ISYPRTES+ YPSSFD LS L W V ++ EG
Sbjct: 321 SPHQVAQVAESLYTQGLISYPRTESSKYPSSFDIEAVLSELEKTSTWFPIV-KIFREGKY 379
Query: 174 KPRS---GTDAGDHPPITPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPD 220
+S G D GDHPPITP+R A L + R+Y + FL +VS D
Sbjct: 380 LNKSRQGGVDKGDHPPITPVRGAERGSLRNAEHERVYELIVYSFLASVSED 430
>gi|119194847|ref|XP_001248027.1| hypothetical protein CIMG_01798 [Coccidioides immitis RS]
Length = 634
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 1/220 (0%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ ++ YG CQ PTLGF V RY ++ +FKPE FW++ ++G + W R LFD
Sbjct: 193 ALSERLISYGSCQFPTLGFVVDRYFRVKNFKPEPFWSIKVTHARDGKTVNFTWSRGNLFD 252
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
M + + + +V +++K K RP L TV+L + S L Q M++AE
Sbjct: 253 RAAVVMIFERCLTAKTAKVTKVNKKPTKKWRPLPLTTVDLQMMGSKFLRMDSQKVMKVAE 312
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
LYT+GFISYPRTE+ + D + + + VWG Y + L+A G+ +PRSG
Sbjct: 313 SLYTKGFISYPRTETDQFDKGIDLKKLIEKQIQDGVWGQYSQGLMAGGFKQPRSGRHNDQ 372
Query: 184 -HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ +L D R+Y +V + FL S D K
Sbjct: 373 AHPPIHPVTYVAPSVLTADERRVYEFVVRRFLACCSDDAK 412
>gi|340520630|gb|EGR50866.1| DNA topoisomerase [Trichoderma reesei QM6a]
Length = 663
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 113/216 (52%), Gaps = 1/216 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L+L YG CQ PTLGF V RY ++ +F PE FW + ++G +++ W R +LFD
Sbjct: 205 LVLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWGISLTHNKDGKQVRFSWARNRLFDRMTV 264
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + + +V + EK K +P L TV L K A+ L Q AM +AE LY
Sbjct: 265 VILYERCLAAKKAKVTKVQEKPTRKFKPLPLTTVELQKAATRLLRMSGQQAMTIAEGLYN 324
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ + + R + A + WG Y + L+ G+ +PR G D HPP
Sbjct: 325 KGFISYPRTETDRFDKGMNLRALVQKQATDQRWGTYAQGLVNGGFRQPREGKHDDKAHPP 384
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ L D RLY YV + FL S D +
Sbjct: 385 IHPIAHVAPSALSYDEGRLYEYVVRRFLACCSEDAQ 420
>gi|147906574|ref|NP_001085699.1| topoisomerase (DNA) III alpha [Xenopus laevis]
gi|49115195|gb|AAH73221.1| MGC80537 protein [Xenopus laevis]
Length = 1022
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F +V++ LI YG CQ PTLGF V+R+ I +F PE F+ + ++ W+R
Sbjct: 234 IFPSVLSNQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVTHEHEDGLVEFSWKRN 293
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + ++ M+D + V+++ K +SK RP L+TV L K+AS L G + M
Sbjct: 294 RLFNHTACLVLYQICMEDPMATVMEVGSKPKSKWRPVALDTVELEKLASRKLKIGAKETM 353
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
+ AE+LYTQGFISYPRTE+ +P + + ++P WG + +R+L G PR+G
Sbjct: 354 KTAEKLYTQGFISYPRTETNIFPKDLNLTSLVEQQTHDPQWGGFAQRILERGGPTPRNGN 413
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P + T ++ G + R+Y ++ +HFL S D +
Sbjct: 414 KTDQAHPPIHPTK-YTNNLQGNEQ-RIYEFIVRHFLACCSQDAQ 455
>gi|403364238|gb|EJY81876.1| DNA topoisomerase [Oxytricha trifallax]
Length = 955
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 130/221 (58%), Gaps = 9/221 (4%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLE-----WERQKLF 62
L+L YGPCQ PTLGF V+R+ I FK EKFW L+ L++ + KL+ WER +++
Sbjct: 209 LVLSYGPCQFPTLGFIVERFKHIRDFKAEKFWQLNLKLLKRSNDGKLDEVNFGWERDRVY 268
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D + + ++ +I++ + ++ RP LNT+ K+ S L AM++
Sbjct: 269 DKMTCLALYERCLDSGRAKISEINKSRRTRGRPNPLNTIEAQKLISRKLKIASAQAMEIM 328
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSGT- 179
E+LY +G +SYPRTE+ + + + R ++ L + V+GD+ +R +++G + P++G
Sbjct: 329 EKLYQRGILSYPRTETNTFNPTINLRNIVNELCKSEVFGDFAQR-ISDGSMWGGPKNGKQ 387
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
D HPPI P++ A++ LG D WR+Y V +HFL T+S D
Sbjct: 388 DDKAHPPIHPVKFASKQDLGFDEWRVYELVARHFLATISKD 428
>gi|336469613|gb|EGO57775.1| hypothetical protein NEUTE1DRAFT_81659 [Neurospora tetrasperma FGSC
2508]
Length = 662
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 1/220 (0%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ L+L YG CQ PTLGF V RY ++ +F PE FW++ + G ++ W R +LFD
Sbjct: 202 AMADLLLSYGSCQFPTLGFVVDRYFRVRNFVPEPFWSIKVMHEKEGVKVNFNWSRNRLFD 261
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ + + +I +V ++ EKQ K +P L TV L K+A+ L Q AM +AE
Sbjct: 262 RLSVLLLYERCLAAKIAKVTEVKEKQTKKWKPLPLTTVELQKMATRFLRMTGQEAMTVAE 321
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
+LY +GFISYPRTE+ + + R + + WG + + L+ + +PR G D
Sbjct: 322 KLYNKGFISYPRTETDRFDKGMNLRALVQKQTQDQRWGPFAQNLVDGAFQQPRQGRNDDK 381
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ A +L RLY +V + FL S D +
Sbjct: 382 AHPPIHPITYAAPTVLDDQEKRLYEFVVRRFLACCSEDAR 421
>gi|350290740|gb|EGZ71954.1| prokaryotic type I DNA topoisomerase [Neurospora tetrasperma FGSC
2509]
Length = 654
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 1/220 (0%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ L+L YG CQ PTLGF V RY ++ +F PE FW++ + G ++ W R +LFD
Sbjct: 194 AMADLLLSYGSCQFPTLGFVVDRYFRVRNFVPEPFWSIKVMHEKEGVKVNFNWSRNRLFD 253
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ + + +I +V ++ EKQ K +P L TV L K+A+ L Q AM +AE
Sbjct: 254 RLSVLLLYERCLAAKIAKVTEVKEKQTKKWKPLPLTTVELQKMATRFLRMTGQEAMTVAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
+LY +GFISYPRTE+ + + R + + WG + + L+ + +PR G D
Sbjct: 314 KLYNKGFISYPRTETDRFDKGMNLRALVQKQTQDQRWGPFAQNLVDGAFQQPRQGRNDDK 373
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ A +L RLY +V + FL S D +
Sbjct: 374 AHPPIHPITYAAPTVLDDQEKRLYEFVVRRFLACCSEDAR 413
>gi|164428822|ref|XP_956391.2| hypothetical protein NCU00081 [Neurospora crassa OR74A]
gi|157072295|gb|EAA27155.2| hypothetical protein NCU00081 [Neurospora crassa OR74A]
Length = 638
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 1/220 (0%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ L+L YG CQ PTLGF V RY ++ +F PE FW++ + G ++ W R +LFD
Sbjct: 173 AMADLVLSYGSCQFPTLGFVVDRYFRVRNFVPEPFWSIKVMHEKEGVKVNFNWSRNRLFD 232
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ + + +I +V ++ EKQ K +P L TV L K+A+ L Q AM +AE
Sbjct: 233 RLSVLLLYERCLAAKIAKVTEVKEKQTKKWKPLPLTTVELQKMATRFLRMTGQEAMTVAE 292
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
+LY +GFISYPRTE+ + + R + + WG + + L+ + +PR G D
Sbjct: 293 KLYNKGFISYPRTETDRFDKGMNLRALVQKQTQDQRWGPFAQNLVDGAFQQPRQGRNDDK 352
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ A +L RLY +V + FL S D +
Sbjct: 353 AHPPIHPIIYAAPTVLDDQEKRLYEFVVRRFLACCSEDAR 392
>gi|390601900|gb|EIN11293.1| prokaryotic type I DNA topoisomerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 708
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 120/220 (54%), Gaps = 3/220 (1%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A + + YGPCQ PTLGF V RY Q+ +F PE FW ++ L + G E++ W+R +FD
Sbjct: 193 AEIKDTVSYGPCQFPTLGFVVARYKQVKAFVPETFWYIYFALRREGDEIQFTWKRGHIFD 252
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+D A + V+ DR+ V +++K K +P L TV L K S L P+ + +AE
Sbjct: 253 YDFALTLYEGVLTDRLATVTKVTKKATKKWKPLPLTTVELQKAGSRLLRMAPKKVLDIAE 312
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAG 182
+LY QGF+SYPRTE+ + FDF + +P WG + +L G+A PR G D
Sbjct: 313 KLYQQGFLSYPRTETDQFDRQFDFMSLIQKQTVDPAWGQFATQLQGGGFATPRRGKHDDK 372
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P A L D ++Y +V + FL S D +
Sbjct: 373 AHPPIHPTAHAAN--LAGDEKKVYEFVTRRFLACCSKDAE 410
>gi|444525410|gb|ELV14017.1| DNA topoisomerase 3-alpha [Tupaia chinensis]
Length = 967
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 126/227 (55%), Gaps = 10/227 (4%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEW 56
+F V+T LI YG CQ PTLGF V+R+ I +F PE F H V + +E ++ W
Sbjct: 209 VFPEVLTEQLISYGSCQFPTLGFVVERFKAIQAFVPETF---HRIKVNHDHEDGIVEFNW 265
Query: 57 ERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQ 116
+R +LF+ + L M+D + V+++ K +SK RP L+TV L K+AS L +
Sbjct: 266 KRHRLFNHTACLVLYHLCMEDPMATVVEVKSKPKSKWRPQALDTVELEKLASRKLRINAK 325
Query: 117 MAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
M++AE+LYTQGFISYPRTE+ +P + + +P WG + +L G PR
Sbjct: 326 ETMRIAEKLYTQGFISYPRTETNIFPKDLNLTALVDQQTQDPRWGAFARSILERGGPNPR 385
Query: 177 SGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+G + HPPI P + A+ L D RLY ++ +HFL S D +
Sbjct: 386 NGNKSDQAHPPIHPTKYASN--LQGDEQRLYEFIVRHFLACCSQDAQ 430
>gi|328786138|ref|XP_394050.4| PREDICTED: DNA topoisomerase 3-alpha-like [Apis mellifera]
Length = 1012
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 78/214 (36%), Positives = 122/214 (57%), Gaps = 4/214 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+++ YG CQ PTLGF V+R+L I FK E +W + +++ ++ +WER KLF+
Sbjct: 205 MLISYGSCQFPTLGFVVERFLAIEEFKIEPYWKIKVMDIRDNISVEFKWERGKLFEKLPC 264
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + ++ V IS K SK RP L+T+ L K S L + M++AE+LYT
Sbjct: 265 EIFLDICLEQPNATVQKISSKPTSKWRPLPLDTIELEKQGSRKLNLNAKEIMRIAEKLYT 324
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
QG ISYPRTE+ +P + ++ NNP WG++ ++LL +G PR G + HPP
Sbjct: 325 QGLISYPRTETNIFPKELNLISLVNQQINNPAWGNFAQQLLEKG-VNPRKGKKSDQAHPP 383
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
I P++ D L + ++Y +V +HFL +S +
Sbjct: 384 IHPIKYC--DNLNGNEAKVYEFVVRHFLACLSSN 415
>gi|326477792|gb|EGE01802.1| DNA topoisomerase III [Trichophyton equinum CBS 127.97]
Length = 630
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 1/220 (0%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ I+ YG CQ PTLGF V RY+++ +FKPE FW++ ++G + W+R LFD
Sbjct: 204 ALAERIISYGSCQFPTLGFVVDRYMRVKNFKPEAFWSIKVSHTRDGITVNFNWQRGHLFD 263
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ + + + V +++K SK RP L TV+L + S L Q M+ AE
Sbjct: 264 RAAVVILFERCLAAKTATVTKVNKKPTSKWRPLPLTTVDLQMMGSKYLRIDSQAIMKAAE 323
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
LYT+GFISYPRTE+ + + FD + + + VWG+Y L+ G+ +PR G +
Sbjct: 324 TLYTKGFISYPRTETDQFDNEFDLKKLVEKQYPSEVWGEYARGLIGGGFKQPRRGRNNDK 383
Query: 184 -HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ + +L + ++Y +V + FL S D K
Sbjct: 384 AHPPIHPVAYVSPTVLNANEKKVYEFVTRRFLACCSEDAK 423
>gi|327287266|ref|XP_003228350.1| PREDICTED: DNA topoisomerase 3-alpha-like [Anolis carolinensis]
Length = 997
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 127/224 (56%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F E F+ + + W+R
Sbjct: 233 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVAETFYKIKVTHDHEEGTVDFSWKRN 292
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + ++ M+D + V+++ + +SK RP L+TV L K+AS L + M
Sbjct: 293 RLFNHTACLILYQMCMEDPLATVVEVGSRPKSKWRPLPLDTVELEKLASRKLKINAKETM 352
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + +R+L +G PRSGT
Sbjct: 353 KIAEKLYTQGYISYPRTETNIFPKDLNLPNLVQLQTLDPRWGAFAQRILDQGGPTPRSGT 412
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + AT ++ G D RLY ++ +HFL S D K
Sbjct: 413 KSDQAHPPIHPTKHAT-NLQGNDQ-RLYEFIVRHFLACCSQDAK 454
>gi|407034342|gb|EKE37171.1| DNA topoisomerase domain containing protein [Entamoeba nuttalli
P19]
Length = 840
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 124/215 (57%), Gaps = 8/215 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV R +I +F + F+TL + + G L+ ++ FD
Sbjct: 204 LISFGPCQTPTLGFCVDRQKEIDNFVSKPFYTLKVIIEDHEGRNKTLKLDKH----FDNK 259
Query: 68 TMFQKLVMQDRILE--VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ + +V + ++ VI ++ + K RP GLNTV +LKVAS LG GPQ M +AE+L
Sbjct: 260 SEVEDIVKSCKGIQGKVIKMNVNELKKSRPVGLNTVEMLKVASVKLGLGPQETMSIAEKL 319
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
YT+G+ISYPRTEST Y S F+F L+ L + + V+ + G P +G D GDHP
Sbjct: 320 YTRGYISYPRTESTKYSSHFNFTDILNNLQQTNQFREKVQLIKQNGINIPYNGEDKGDHP 379
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
PITP+ E L RL+ ++ FL ++ D
Sbjct: 380 PITPLNYPNE-YLNDSEKRLFDFITNTFLASIYKD 413
>gi|449546712|gb|EMD37681.1| hypothetical protein CERSUDRAFT_50044 [Ceriporiopsis subvermispora
B]
Length = 1000
Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 114/218 (52%), Gaps = 8/218 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-----GYELKLEWERQKLFD 63
++ YGPCQ PTLGF V RY Q+ +F PE FW ++ L + E+ W+R LFD
Sbjct: 251 VISYGPCQFPTLGFVVSRYNQVKAFVPEPFWYIYLSLTKELSGGEPNEITFTWKRGHLFD 310
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
VA ++V+ V+ ++ K K +P L TV+L K S L P+ + +AE
Sbjct: 311 LQVAAELYEMVLGAPAARVVRVTAKDTKKWKPLPLTTVDLQKAGSRLLKISPKKVLDIAE 370
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
RLY QGF+SYPRTE+ + FDF + A +P WG + L G++ PR G D
Sbjct: 371 RLYQQGFLSYPRTETDQFDPKFDFATLIGKQAADPAWGGFATALQGGGFSPPRKGKKDDK 430
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P A L D R+Y Y+ + FL S D
Sbjct: 431 AHPPIHPTAHAAN--LAGDEKRVYEYITRRFLACCSKD 466
>gi|320034640|gb|EFW16583.1| DNA topoisomerase 3-beta [Coccidioides posadasii str. Silveira]
Length = 634
Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 1/220 (0%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ ++ YG CQ PTLGF V RY ++ +FKPE +W++ ++G + W R LFD
Sbjct: 193 ALSERLISYGSCQFPTLGFVVDRYFRVKNFKPEPYWSIKVTHARDGKTVNFTWSRGNLFD 252
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
M + + + +V +++K K RP L TV+L + S L Q M++AE
Sbjct: 253 RAAVVMIFERCLTAKTAKVTKVNKKPTKKWRPLPLTTVDLQMMGSKFLRMDSQKVMKVAE 312
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAG 182
LYT+GFISYPRTE+ + D + + + VWG Y + L+A G+ +PRSG +
Sbjct: 313 SLYTKGFISYPRTETDQFDKGIDLKKLIEKQIQDGVWGQYSQGLMAGGFKQPRSGRHNDQ 372
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ +L D R+Y +V + FL S D K
Sbjct: 373 AHPPIHPVTYVAPSVLTADERRVYEFVVRRFLACCSDDAK 412
>gi|408398943|gb|EKJ78068.1| hypothetical protein FPSE_01529 [Fusarium pseudograminearum CS3096]
Length = 666
Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 1/216 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L L YG CQ PTLGF V RY ++ +F PE FW++ ++G ++ W R +LFD
Sbjct: 205 LTLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWSIKLTHNRDGKKVDFSWLRNRLFDRMST 264
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + + V + +K K +P L TV L K A+ L Q AM +AE LY
Sbjct: 265 VILYERCLAAKTATVTKVQQKPTRKFKPLPLTTVELQKAATRLLHMSGQQAMTIAEGLYN 324
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPP 186
+GFISYPRTE+ + + R + N+ WG + + L+ + +PR G D HPP
Sbjct: 325 KGFISYPRTETDRFDRGMNLRALVDKHTNDQRWGPFAQNLVNGAFQQPREGRNDDKAHPP 384
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ A+ +L +D RLY YV + FL S D K
Sbjct: 385 IHPITYASPTVLNRDEGRLYEYVVRRFLACCSDDAK 420
>gi|308158051|gb|EFO60919.1| DNA topoisomerase III [Giardia lamblia P15]
Length = 973
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 127/238 (53%), Gaps = 19/238 (7%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW----- 56
F + + ++ YGPCQTPTL FCV R+ +I F+P++ ++L + L W
Sbjct: 194 FADLQSSVISYGPCQTPTLSFCVSRHDEIQRFRPKQIFSLDVCALIGDQLCPLRWQGVPS 253
Query: 57 ERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQ 116
E +++ + A + +K + L+V+ + + RP +NTV LLK AS+ LG P
Sbjct: 254 ESREVIEEKRARLLEKSAT--KCLKVLSFKSSKSTLPRPLPMNTVALLKAASTVLGLSPN 311
Query: 117 MAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSAL--ANNPVWGDYVERLLAEG--- 171
AM LAERLY G+ISYPRTEST YPS ++ R + AL +++ + LL
Sbjct: 312 SAMALAERLYIAGYISYPRTESTTYPSGYNLREIVLALKESSSTRISQSAQNLLPSSKKS 371
Query: 172 ------YAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
Y PR GTD GDHPPI P + G D LY+ + +HFL TVSPD Y
Sbjct: 372 VDENVRYTNPRKGTDQGDHPPIMPTGLIPHGVSG-DELSLYNLITKHFLATVSPDAVY 428
>gi|301612786|ref|XP_002935889.1| PREDICTED: DNA topoisomerase 3-alpha [Xenopus (Silurana)
tropicalis]
Length = 1021
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
MF +V++ LI YG CQ PTLGF V+R+ I +F PE F+ + ++ W+R
Sbjct: 234 MFPSVLSNQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVTHEHEDGLVEFSWKRN 293
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + ++ M+D + V+++ K +SK RP L+TV L K+AS L G + M
Sbjct: 294 RLFNHTACLVLYQICMEDPMATVMEVGSKPKSKWRPVALDTVELEKLASRKLKIGAKETM 353
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQGFISYPRTE+ +P + + ++ WG + +R+L G PR+G
Sbjct: 354 KVAEKLYTQGFISYPRTETNIFPKDLNLTSLVEQQTHDHQWGGFAQRILERGGPTPRNGN 413
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P + + L + R+Y ++ +HFL S D +
Sbjct: 414 KTDQAHPPIHPTKYT--NSLQGNEQRIYEFIVRHFLACCSQDAQ 455
>gi|46124677|ref|XP_386892.1| hypothetical protein FG06716.1 [Gibberella zeae PH-1]
Length = 695
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 1/216 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L L YG CQ PTLGF V RY ++ +F PE FW++ ++ ++ W R +LFD
Sbjct: 205 LTLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWSIKLTHNRDSKKVDFSWLRNRLFDRMST 264
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + + V + +K K +P L TV L K A+ L Q AM +AE LY
Sbjct: 265 VILYERCLAAKTATVTKVQQKPTRKFKPLPLTTVELQKAATRLLHMSGQQAMTIAEGLYN 324
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPP 186
+GFISYPRTE+ + + R + N+ WG + + L+ G+ +PR G D HPP
Sbjct: 325 KGFISYPRTETDRFDRGMNLRALVDKHTNDQRWGPFAQNLVNGGFQQPREGRNDDKAHPP 384
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ A+ +L +D RLY YV + FL S D K
Sbjct: 385 IHPITYASPTVLNRDEGRLYEYVVRRFLACCSDDAK 420
>gi|145526124|ref|XP_001448873.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416439|emb|CAK81476.1| unnamed protein product [Paramecium tetraurelia]
Length = 859
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 82/217 (37%), Positives = 121/217 (55%), Gaps = 8/217 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
I+ YGPCQ PTLGF VQR +I SF E+FW + ++ + W+R LFD F VA
Sbjct: 214 IVSYGPCQIPTLGFVVQRQKEIDSFVKEQFWFIQS---EDDQKCIYNWDRTHLFDEFIVA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F++ + VI++ +K K +P L T+ K+AS L AM+LAERLY
Sbjct: 271 LLFERCYQESAT--VINVQQKDVQKWKPYPLCTIEFEKLASKKLRISAHKAMELAERLYN 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+G+ISYPRTE+ +P + + + + N+PVWG+Y LL + P++G D HPP
Sbjct: 329 KGYISYPRTETNKFPPTINLQTIIRDQQNHPVWGEYATNLLNFAFEYPKAGNKDDKAHPP 388
Query: 187 ITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P++ E + K W +Y + +HFL S + K
Sbjct: 389 IHPVKMMIENEAQNKQEWDVYQLITRHFLACCSKNAK 425
>gi|145535065|ref|XP_001453271.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420982|emb|CAK85874.1| unnamed protein product [Paramecium tetraurelia]
Length = 895
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 82/217 (37%), Positives = 121/217 (55%), Gaps = 8/217 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
I+ YGPCQ PTLGF VQR +I SF EKFW + + Q G E W R +FD V
Sbjct: 214 IVSYGPCQIPTLGFVVQRQKEIDSFVKEKFWFIQ-CVDQTGCEYN--WSRGNIFDEMIVL 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F++ + +V D+ +K+ K +P L+T+ K+AS L AM LAE+LY
Sbjct: 271 LLFERCFTEQA--QVTDVQQKEVQKWKPYPLSTIEFEKLASRKLKVSAHKAMDLAEKLYN 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+G+ISYPRTE+ +P + + + + N+PVWG Y + L+ + +PR+G D HPP
Sbjct: 329 RGYISYPRTETNKFPPTINLQNIIRDQINHPVWGQYAQNLIHSNFDQPRAGNKDDKAHPP 388
Query: 187 ITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P++ +E D W +Y + +HFL S + K
Sbjct: 389 IHPVKMMSESDAQTTQEWDIYQLITRHFLACCSKNAK 425
>gi|340376735|ref|XP_003386887.1| PREDICTED: DNA topoisomerase 3-alpha-like [Amphimedon
queenslandica]
Length = 981
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQ PTLGF V RY +I +F PE F+ + + + W+R +LF+
Sbjct: 213 LVSYGPCQFPTLGFVVDRYKEIQAFVPETFYKITVTHQASNENVSFNWKRVRLFNHTCCL 272
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +L M++ V+DI K +SK RPC L+TV L K+ S L + M++AE+LYTQ
Sbjct: 273 ILYQLCMENPTARVVDIKSKPKSKWRPCPLDTVELEKLCSRKLRISAKETMKIAEKLYTQ 332
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P SFD + + WG + +L+ G PR+G + HPPI
Sbjct: 333 GFISYPRTETNIFPESFDLVSLIREQTQDHRWGGFAGNVLSVG-PTPRNGQKTDNAHPPI 391
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
P++ T + G + RLY +V +HFL S +
Sbjct: 392 HPVK-YTNSLTGNEQ-RLYEFVVRHFLACCSKN 422
>gi|308801985|ref|XP_003078306.1| DNA topoisomerase III alpha, putative (ISS) [Ostreococcus tauri]
gi|116056757|emb|CAL53046.1| DNA topoisomerase III alpha, putative (ISS) [Ostreococcus tauri]
Length = 842
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 8/218 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YGPCQ PTLGF VQR I + E FW++ + G K EW R +LFD A+
Sbjct: 215 IVSYGPCQFPTLGFIVQRKWDIDAHVSEDFWSIKCSHAREGTNTKFEWSRGRLFDRGFAS 274
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + VID+ ++ + P LNT+ + K + L P+ M++AE LY
Sbjct: 275 ALHNMCARANVATVIDVDGQESRRWPPHPLNTIEMQKRLNRTLRISPEQIMKIAEDLYND 334
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAK--PRSGTDAGDHPP 186
GFISYPRTE+ +P+ F++ GTL L +P +G YV++L+ G + P G D HPP
Sbjct: 335 GFISYPRTETDKFPADFNYDGTLRDLHPHPQFGFYVDQLINGGRFRQPPGGGKDDKAHPP 394
Query: 187 ITPMRSATE----DMLGKD--AWRLYSYVCQHFLGTVS 218
I P + A+E M K+ A ++Y +V +HFL T S
Sbjct: 395 IYPTKLASEAQYQQMRAKNQHAPKVYEFVVRHFLATCS 432
>gi|400597476|gb|EJP65209.1| DNA topoisomerase [Beauveria bassiana ARSEF 2860]
Length = 667
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 112/217 (51%), Gaps = 1/217 (0%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
L L YG CQ PTLGF V RY ++ +F PE FW + + G + W R +LFD
Sbjct: 204 NLTLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWGIKVTHSREGKQAIFSWSRYRLFDRMT 263
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ + + ++ ++ + EK K +P L TV L K A+ L Q AM +AE LY
Sbjct: 264 TIILYERCLAAKMAKITKVQEKPTRKFKPLPLTTVELQKAATRLLRMSGQQAMTIAEGLY 323
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHP 185
+GFISYPRTE+ + + R + + WGD+ + L+ G+ +PR G D HP
Sbjct: 324 NKGFISYPRTETDRFDKGMNLRALVQKQTPDQRWGDFAQGLVNGGFQQPREGRHDDKAHP 383
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P+ A +L D RLY YV + FL S D K
Sbjct: 384 PIHPITYAAPSVLNYDEGRLYEYVVRRFLACCSEDAK 420
>gi|67473767|ref|XP_652633.1| DNA topoisomerase III [Entamoeba histolytica HM-1:IMSS]
gi|56469504|gb|EAL47247.1| DNA topoisomerase III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707795|gb|EMD47388.1| DNA topoisomerasebeta-1, putative [Entamoeba histolytica KU27]
Length = 840
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV R +I +F + F+TL + + G L+ +++ FD
Sbjct: 204 LISFGPCQTPTLGFCVDRQKEIDNFVSKPFYTLKVIIEDHEGRNKTLKLDKR----FDNK 259
Query: 68 TMFQKLVMQDRILE--VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ + +V + ++ VI +S + K RP GLNTV +LKVAS LG GPQ M +AE+L
Sbjct: 260 SEVEDIVKSCKGVQGKVIKMSVNELKKSRPVGLNTVEMLKVASVKLGLGPQDTMSIAEKL 319
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
YT+G+ISYPRTEST Y S F+F L+ L + + V+ + G P +G D GDHP
Sbjct: 320 YTRGYISYPRTESTKYSSYFNFTDILNNLQQTNQFREKVQLIKQNGINIPYNGEDKGDHP 379
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
PITP+ E L +L+ ++ FL ++ D
Sbjct: 380 PITPLNYPNE-YLNDSEKKLFDFITNTFLASIYKD 413
>gi|225431699|ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
Length = 914
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 117/217 (53%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
L+L YGPCQ PTLGF V+RY +I S +PE+FWT++ + W R LFD+
Sbjct: 208 NLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFWTINCSHKSDEGTSTFNWMRAHLFDYTC 267
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + ++ +Q+ V + ++++ K P LNT+ L K AS + M++AE LY
Sbjct: 268 AVIIYEMCIQEPTATVTKVRQQEKLKYPPHPLNTIELEKRASRYFHMSSEHTMKVAEDLY 327
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRS----GTDAG 182
GFISYPRTE+ + D G + +P+WG Y +RLL G R+ G D
Sbjct: 328 QTGFISYPRTETDYFSERTDLHGIVQEQLGHPIWGSYAQRLLDPGAGLWRNPSNGGHDDK 387
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + SA E +D RLY V +HFL VS
Sbjct: 388 AHPPIHPTKFSAGESGWSQDHQRLYELVVRHFLACVS 424
>gi|159119151|ref|XP_001709794.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
gi|157437911|gb|EDO82120.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
Length = 973
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 126/238 (52%), Gaps = 19/238 (7%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW----- 56
F + + ++ YGPCQTPTL FCV R+ +I F+P++ ++L + L W
Sbjct: 194 FADLQSSVISYGPCQTPTLSFCVSRHDEIQRFRPKQIFSLDVCALIGDQPHSLRWQGVPS 253
Query: 57 ERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQ 116
E +++ + +F K + L+V+ + + RP +NTV LLK AS+ LG P
Sbjct: 254 ESREVIEEKRTGLFGKSAT--KCLKVLSFKSSKSTLPRPLPMNTVALLKAASTVLGLSPN 311
Query: 117 MAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSAL--ANNPVWGDYVERLLAEG--- 171
AM LAERLY G+ISYPRTEST YPS ++ R + AL +++ + LL
Sbjct: 312 SAMALAERLYIAGYISYPRTESTTYPSGYNLREIVLALKESSSTRISQCAQNLLPSSKKS 371
Query: 172 ------YAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
Y PR GTD GDHPPI P D + + LY+ + +HFL TVSPD Y
Sbjct: 372 SDESVRYTNPRRGTDQGDHPPIMPTGLIPHD-VSSNELSLYNLITKHFLATVSPDAVY 428
>gi|166240582|ref|XP_643754.2| DNA topoisomerase III [Dictyostelium discoideum AX4]
gi|74818660|sp|Q8T2T7.1|TOP3_DICDI RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|165988670|gb|EAL69909.2| DNA topoisomerase III [Dictyostelium discoideum AX4]
Length = 828
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 123/220 (55%), Gaps = 11/220 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL---HPYLVQNGYEL---KLEWERQKLF 62
I+ YGPCQ PTLGF V+RY +I +FKPE FW L H + + ++ W R +LF
Sbjct: 232 IISYGPCQFPTLGFVVERYFRIVNFKPEDFWHLSVVHEKMDTSSGKMIPVTFSWCRNRLF 291
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D+ A + + + + V+D++ K ES+ RP L T+ L K AS L MQ A
Sbjct: 292 DYTAAFILYEKCLDNTEATVVDVTSK-ESRYRPVPLTTIELQKAASKKLRISSVQTMQYA 350
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDA 181
E LYT+G ISYPRTE+ ++ + D +G + A+NP WG Y RL+ + P+SG +
Sbjct: 351 EELYTKGLISYPRTETDSFQAGTDLKGLIGNQASNPEWGAYASRLINNNQFVYPKSGKNN 410
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ HPPI P SAT L + ++Y ++ + FL S +
Sbjct: 411 DNSHPPIHPTSSAT--GLSGNLKKIYDFITRRFLACCSEE 448
>gi|383854782|ref|XP_003702899.1| PREDICTED: DNA topoisomerase 3-alpha-like [Megachile rotundata]
Length = 1018
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 121/214 (56%), Gaps = 4/214 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+++ YG CQ PTLGF V+RYL + FKPE +W + ++ + W R +LF+
Sbjct: 205 MLISYGSCQFPTLGFVVERYLAVERFKPEPYWKISVKDTRDNISVDFRWARGRLFEKLPC 264
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + ++ V ++ K SK RP L+TV L K S L + M++AE+LYT
Sbjct: 265 EVFLDMCLEQPNATVQKVTSKPTSKWRPVPLDTVELEKQGSRKLRLTAKQTMKIAEKLYT 324
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
QGFISYPRTE+ +P + ++ NNP+WG++ ++LL +G PR G + HPP
Sbjct: 325 QGFISYPRTETNIFPKELNLVPFVNQQVNNPLWGNFAQQLLEKGL-HPRQGKKSDQAHPP 383
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
I P + A D L D ++Y +V +HFL +S +
Sbjct: 384 IHPTKCA--DNLQGDEAKVYEFVVRHFLACLSDN 415
>gi|326474803|gb|EGD98812.1| DNA topoisomerase III [Trichophyton tonsurans CBS 112818]
Length = 630
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 1/220 (0%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ I+ YG CQ PTLGF V RY+++ +FKPE FW++ ++G + W+R LFD
Sbjct: 204 ALAERIISYGSCQFPTLGFVVDRYMRVKNFKPEAFWSIKVSHTRDGITVNFNWQRGHLFD 263
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ + + + V +++K SK RP L TV+L + S L Q M+ AE
Sbjct: 264 RAAVVILFERCLAAKTATVTKVNKKPTSKWRPLPLTTVDLQMMGSKYLRIDSQAIMKAAE 323
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
LYT+GFISYPRTE+ + + D + + + VWG+Y L+ G+ +PR G +
Sbjct: 324 TLYTKGFISYPRTETDQFDNEIDLKKLVEKQYPSEVWGEYARGLIGGGFKQPRRGRNNDK 383
Query: 184 -HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ + +L + ++Y +V + FL S D K
Sbjct: 384 AHPPIHPVAYVSPTVLNANEKKVYEFVTRRFLACCSEDAK 423
>gi|312072253|ref|XP_003138981.1| DNA topoisomerase III [Loa loa]
gi|307765852|gb|EFO25086.1| DNA topoisomerase III [Loa loa]
Length = 800
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 119/215 (55%), Gaps = 2/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YG CQ PTLGF V+RY I F E FW + + ++ W+RQ+LFD DV
Sbjct: 233 IVSYGSCQFPTLGFIVERYQAIKEFISETFWKISMKHTREDIMVEFVWDRQRLFDRDVVQ 292
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + R V+ + K +SK RP L+TV L K+A L + + M +AERLY +
Sbjct: 293 VLLDDCEEAREARVLSVIRKPKSKWRPVALDTVELEKLAVRKLKFSAKETMVVAERLYNK 352
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P D + + WG++ + + A G + PR+G+ + HPPI
Sbjct: 353 GYISYPRTETNKFPKDIDLNIYVQQQTVSGEWGEFAQEVAAHGPS-PRNGSKTDEAHPPI 411
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ AT + L W LY ++ +HFL +S D K
Sbjct: 412 HPLKFATTNELIGLEWSLYEFIVRHFLACLSVDAK 446
>gi|392862729|gb|EAS36605.2| DNA topoisomerase III [Coccidioides immitis RS]
Length = 645
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 112/211 (53%), Gaps = 1/211 (0%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G CQ PTLGF V RY ++ +FKPE FW++ ++G + W R LFD M +
Sbjct: 230 GSCQFPTLGFVVDRYFRVKNFKPEPFWSIKVTHARDGKTVNFTWSRGNLFDRAAVVMIFE 289
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ + +V +++K K RP L TV+L + S L Q M++AE LYT+GFIS
Sbjct: 290 RCLTAKTAKVTKVNKKPTKKWRPLPLTTVDLQMMGSKFLRMDSQKVMKVAESLYTKGFIS 349
Query: 133 YPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPITPMR 191
YPRTE+ + D + + + VWG Y + L+A G+ +PRSG HPPI P+
Sbjct: 350 YPRTETDQFDKGIDLKKLIEKQIQDGVWGQYSQGLMAGGFKQPRSGRHNDQAHPPIHPVT 409
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+L D R+Y +V + FL S D K
Sbjct: 410 YVAPSVLTADERRVYEFVVRRFLACCSDDAK 440
>gi|145511830|ref|XP_001441837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409098|emb|CAK74440.1| unnamed protein product [Paramecium tetraurelia]
Length = 947
Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats.
Identities = 77/217 (35%), Positives = 121/217 (55%), Gaps = 8/217 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
++ YGPCQ PTLGF VQR +I SF EKFW + ++ + W R +FD V
Sbjct: 214 VISYGPCQIPTLGFVVQRQKEIDSFVKEKFWFIQ---CEDQTKCGYNWSRGNIFDEMIVL 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F++ + ++ D+ K+ K +P L+T+ K+AS L AM+LAE+LY
Sbjct: 271 ILFERCFTEQA--KITDVQSKEVQKWKPYPLSTIEFEKLASKKLKISAHKAMELAEKLYN 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ +P + + + + N+PVWG++ + L+ + +PR+G D HPP
Sbjct: 329 RGFISYPRTETNKFPPTINLQNIIRDQVNHPVWGEFAQSLINCNFDQPRAGNKDDKAHPP 388
Query: 187 ITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P++ E D + W +Y + +HFL S + K
Sbjct: 389 IHPVKMMRESDAQTQQEWEIYQLITRHFLACCSKNAK 425
>gi|154315224|ref|XP_001556935.1| hypothetical protein BC1G_04651 [Botryotinia fuckeliana B05.10]
Length = 647
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 114/219 (52%), Gaps = 1/219 (0%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ T +L YG CQ PTLGF V RY ++ +F PE FW++ + + W+R +LFD
Sbjct: 138 LATKMLSYGSCQFPTLGFVVDRYFKVKNFVPEPFWSIKVTHNRENMNVVFNWKRNRLFDR 197
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V + + + ++ +V + EK SK +P L TV L K AS L Q+AM AE
Sbjct: 198 AVVIILFERCLAAKVAKVTKVQEKPTSKWKPLPLTTVELQKAASRWLNMNSQVAMTAAES 257
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT+GFISYPRTE+ + + R + + WG + + L+ G+ PR G D
Sbjct: 258 LYTKGFISYPRTETDRFDKGMNLRALIEKQVQDNRWGPFAQNLVNGGFHWPREGRNDDKA 317
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ L + R+Y +V + FL S D K
Sbjct: 318 HPPIHPVTYVASTALRPEEARVYEFVVRRFLACCSEDAK 356
>gi|346327587|gb|EGX97183.1| DNA topoisomerase III [Cordyceps militaris CM01]
Length = 612
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 113/217 (52%), Gaps = 1/217 (0%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
L L YG CQ PTLGF V RY ++ +F PE FW++ + ++ W R +LFD
Sbjct: 150 NLTLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWSIKVTHSRERKQVSFSWSRSRLFDRMT 209
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ + + ++ ++ + EK + +P L TV L K A+ L Q AM +AE LY
Sbjct: 210 TIILYERCLAAKLAKITKVQEKPTRRFKPLPLTTVELQKAATRLLRMSGQQAMTIAEGLY 269
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHP 185
+GFISYPRTE+ + + R + + WG++ + L+ G+ +PR G D HP
Sbjct: 270 NKGFISYPRTETDRFDKGINLRTLVQKQTPDQRWGEFAQGLVNGGFQQPREGRHDDKAHP 329
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P+ A +L D RLY YV + FL S D K
Sbjct: 330 PIHPITYAAPSVLNHDEGRLYEYVVRRFLACCSEDAK 366
>gi|302806755|ref|XP_002985109.1| hypothetical protein SELMODRAFT_121488 [Selaginella moellendorffii]
gi|300147319|gb|EFJ13984.1| hypothetical protein SELMODRAFT_121488 [Selaginella moellendorffii]
Length = 791
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 115/215 (53%), Gaps = 5/215 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL YGPCQ PTLGF V+RY Q+ + +PE FWT++ +W R LFD+ A
Sbjct: 210 ILSYGPCQFPTLGFVVERYWQVQAHQPEDFWTINCVYRSENDSASFKWARGHLFDYVAAV 269
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
++ +++ + V ++ ++ K P LNTV L+K AS L G Q M+ AE LY Q
Sbjct: 270 AIYEMCVEEPLATVFSVTGRETRKNPPHPLNTVELVKRASRFLRLGSQETMKAAEELYQQ 329
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKPRS-GTDAGDH 184
GFISYPRTE+ + + D R + +PVWG+Y RLL + P + G D H
Sbjct: 330 GFISYPRTETDYFSENTDLRRMVEEQTRHPVWGNYAHRLLDSRENLWRHPSNGGHDDKAH 389
Query: 185 PPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
PPI P R S E D +Y V +HFL VS
Sbjct: 390 PPIHPTRFSDGEPQWRNDHKAVYELVVRHFLACVS 424
>gi|342885903|gb|EGU85855.1| hypothetical protein FOXB_03703 [Fusarium oxysporum Fo5176]
Length = 656
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 1/215 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L L YG CQ PTLGF V RY ++ +F PE FW++ ++G ++ W R +LFD
Sbjct: 205 LTLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWSIKLMHTRDGKKVDFFWLRNRLFDRMST 264
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + + V + +K K +P L TV L K A+ L Q AM +AE LY
Sbjct: 265 VILYERCLAAKTATVTKVQQKPTRKFKPLPLTTVELQKAATRLLQMSGQQAMTIAEGLYN 324
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ + + R + ++ WG + + L + + +PR G D HPP
Sbjct: 325 KGFISYPRTETDRFDKGMNLRALVEKQTSDQRWGSFAQNLASGAFKQPREGRHDDKAHPP 384
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
I P+ A+ +L +D RLY YV + FL S D
Sbjct: 385 IHPITYASPSILSRDEARLYEYVARRFLACCSDDA 419
>gi|167393819|ref|XP_001740725.1| DNA topoisomerase 3-beta-1 [Entamoeba dispar SAW760]
gi|165895052|gb|EDR22857.1| DNA topoisomerase 3-beta-1, putative [Entamoeba dispar SAW760]
Length = 840
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 124/215 (57%), Gaps = 8/215 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV R +I +F + F+TL L + G L+ ++ FD
Sbjct: 204 LISFGPCQTPTLGFCVDRQKEIDNFVSKPFYTLKVILEDHEGRNKTLKLDKC----FDNK 259
Query: 68 TMFQKLVMQDRILE--VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ +V + ++ VI ++ + K RP GLNTV +LK AS LG GPQ M++AE+L
Sbjct: 260 SDVDDIVKSCKGVQGKVIKMNVNELKKSRPIGLNTVEMLKAASIKLGLGPQDTMRIAEKL 319
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
YT+G+ISYPRTEST Y S F+F L+ L + + V+ + G PR+G D GDHP
Sbjct: 320 YTRGYISYPRTESTKYSSYFNFDDILNNLQETNQFREKVQLVKQNGINIPRNGEDKGDHP 379
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
PITP+ E L +L+ ++ FL ++ D
Sbjct: 380 PITPLNYPNE-YLNDSEKKLFDFITNTFLASIYKD 413
>gi|402593065|gb|EJW86992.1| DNA topoisomerase [Wuchereria bancrofti]
Length = 795
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 2/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YG CQ PTLGF V+RY I F E FW + ++ ++ W+RQ+LFD +V
Sbjct: 228 IVSYGSCQFPTLGFIVERYKAIKEFISETFWKISMKHTRDDILVEFFWDRQRLFDHNVVQ 287
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + R V+ + K +SK RP L+TV L K+A L + + M +AERLY +
Sbjct: 288 VLLDDCEEAREARVLSVIRKPKSKWRPFALDTVELEKLAVRKLKFSAKETMVVAERLYNK 347
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P D + + WGD+ + + G PR+G+ + HPPI
Sbjct: 348 GYISYPRTETNKFPKDMDLNIYVQQQTVSGEWGDFAQEIAVRG-PSPRNGSKTDEAHPPI 406
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ AT + L W LY ++ +HFL +S D K
Sbjct: 407 HPLKFATANELIGLEWSLYEFIVRHFLACLSVDAK 441
>gi|302774743|ref|XP_002970788.1| hypothetical protein SELMODRAFT_94303 [Selaginella moellendorffii]
gi|300161499|gb|EFJ28114.1| hypothetical protein SELMODRAFT_94303 [Selaginella moellendorffii]
Length = 794
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 116/215 (53%), Gaps = 5/215 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL YGPCQ PTLGF V+RY Q+ + +PE FWT++ +W R LFD+ A
Sbjct: 210 ILSYGPCQFPTLGFVVERYWQVQAHQPEDFWTINCVYRSENDSASFKWTRGHLFDYVAAV 269
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
++ +++ + V ++ ++ K P LNTV L+K AS L +G Q M+ AE LY Q
Sbjct: 270 SIYEMCVEEPLATVFSVTGRETRKNPPHPLNTVELVKRASRFLRFGSQETMKAAEELYQQ 329
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPRS-GTDAGDH 184
GFISYPRTE+ + + D R + +PVWG+Y RL+ + P + G D H
Sbjct: 330 GFISYPRTETDYFSENTDLRRMVEEQTRHPVWGNYAHRLVDPRENLWRHPSNGGHDDKAH 389
Query: 185 PPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
PPI P R S E D +Y V +HFL VS
Sbjct: 390 PPIHPTRFSDGEPQWRNDHKAVYELVVRHFLACVS 424
>gi|118374593|ref|XP_001020484.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89302251|gb|EAS00239.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1049
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 85/228 (37%), Positives = 126/228 (55%), Gaps = 17/228 (7%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYE---LKLEWERQKLFDF 64
++ YGPCQ PTLGF V RY QI F+ EKFW + P Y ++ + + L+W R +LFD
Sbjct: 194 VISYGPCQFPTLGFVVDRYNQILKFQDEKFWYIQPSYQWKDNNKTLTVDLKWSRGRLFDQ 253
Query: 65 DVATMFQKLVMQDRILE------VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
+A++F Q+ E V+ +E+ +K+RP L TV+L K L +
Sbjct: 254 AIASVFYLNCTQNEDGEYDPKGIVVKKNERDTTKIRPYPLTTVDLTKQGCRILRMASEKI 313
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPV----WGDYVERLLAEG-YA 173
M AE+LY G+ISYPRTE+ YP +F G L L N WG Y L+ +G +
Sbjct: 314 MHTAEQLYQSGYISYPRTETNKYPDTFQ-NGQLMDLVRNQKQSDEWGFYSSNLIDQGNFQ 372
Query: 174 KPRSG-TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+PR+G D HPPI P++ A ++ L + W++Y ++ +HFL + D
Sbjct: 373 RPRAGKQDDKAHPPIHPIKLANKNQLKPEEWKVYEFITRHFLASCGKD 420
>gi|428186174|gb|EKX55025.1| hypothetical protein GUITHDRAFT_156833 [Guillardia theta CCMP2712]
Length = 652
Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 118/213 (55%), Gaps = 3/213 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L +GPCQ TLGF V R +I F PE FW+ L ++G +W R +LFD T
Sbjct: 209 LLSWGPCQFATLGFIVDRAWKIERFVPEDFWSFRCNLSRDGKTAHFDWRRGRLFDRVACT 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +++M+D I V + E+ + + RP L+TVNL +AS L + MQ+AE LY +
Sbjct: 269 LIYEMLMEDPIATVNSVHERLKERWRPLPLSTVNLQTIASRKLRMSSEETMQIAEELYNK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
GFISYPRTE+ + + + +S + WG+Y LLA + PR+G D HPPI
Sbjct: 329 GFISYPRTETEKFKEGTNLQELISKQCESGHWGNYANELLAGSFQWPRAGQNDDQAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
P + T + GK A +LY V +HFL S +
Sbjct: 389 HPTQ-FTNSLSGKQA-QLYELVVRHFLACCSKN 419
>gi|308483746|ref|XP_003104074.1| CRE-TOP-3 protein [Caenorhabditis remanei]
gi|308258382|gb|EFP02335.1| CRE-TOP-3 protein [Caenorhabditis remanei]
Length = 780
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 119/218 (54%), Gaps = 9/218 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF RY I +F E FW L + G++++ W+R +LFD +V
Sbjct: 210 VISYGSCQFPTLGFVTDRYKLIENFISEPFWKLSVEHSREGHKVEFLWDRNRLFDREVVD 269
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + V +++K +SK RP GL+TV L K+ S L + MQ+AE+LY++
Sbjct: 270 ILHDECKEAKEAHVEKVTKKPKSKWRPQGLDTVELEKLGISKLRMSAKQTMQVAEKLYSK 329
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERL----LAEGYAKPRSGTDAGDH 184
GFISYPRTE+ +P+ + + ++ +WGD+ + L Y P S H
Sbjct: 330 GFISYPRTETNKFPAGLNLTPLVEQQTHSNIWGDFATEVFINFLINYYPSPFSA-----H 384
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PPI P+ A + L D W++Y V +HFL VS D +
Sbjct: 385 PPIHPLTFADKSQLHGDDWKVYELVVRHFLACVSQDAQ 422
>gi|213410242|ref|XP_002175891.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
gi|212003938|gb|EEB09598.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
Length = 621
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 123/216 (56%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQ PTLGF V R+ ++ F PE+FW++ + + W+R ++FD A
Sbjct: 206 VISYGPCQFPTLGFVVDRWQRVEDFLPEQFWSIKLQDRRQAKTVTFNWKRNRVFDHLAAL 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
++ + ++ ++ +V ++ +K ++K +P L TV L K+ L + +++AE LYT
Sbjct: 266 VYLERCLEAKVAKVTNVVQKPKTKYKPLPLTTVELTKLGPKFLRISAKKTLEIAEHLYTN 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPI 187
GF+SYPRTE+ + D + +S ++P WG + LL+ + PRSG+ + HPPI
Sbjct: 326 GFVSYPRTETDQFDPGMDLQTLISKQTSDPSWGTFASDLLSGNFRNPRSGSHNDKAHPPI 385
Query: 188 TPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCK 222
P+ T++ L +D W++Y ++ + FL S +
Sbjct: 386 HPIAHVTQNALPSQDHWKVYQFITRRFLACCSDHAR 421
>gi|336371414|gb|EGN99753.1| hypothetical protein SERLA73DRAFT_52441 [Serpula lacrymans var.
lacrymans S7.3]
Length = 875
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 113/214 (52%), Gaps = 5/214 (2%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELKLEWERQKLFDFDVATM 69
YGPCQ PTLGF V RY Q+ SF PE FW ++ L + E + W R +FD+ VA
Sbjct: 207 YGPCQFPTLGFVVSRYNQVKSFLPEPFWYIYLSLSRPLGAEETQFNWRRGHIFDWHVAVA 266
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ V++ R V +++K K +P L TV L K S L P+ + +AE+LY QG
Sbjct: 267 LYEGVLESRTARVTKVTQKNTKKWKPLPLTTVELQKAGSRLLKLAPKKVLDIAEKLYQQG 326
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPIT 188
F+SYPRTE+ + FDF ++ +P WG + L G+ PR G + HPPI
Sbjct: 327 FLSYPRTETDQFDPQFDFMHLIAKQTADPAWGGFATSLQEGGFNVPRKGKNNDKAHPPIH 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P +A L D ++Y Y+ + FL S D +
Sbjct: 387 P--TAHVANLAGDEKKVYEYIARRFLACCSKDAE 418
>gi|310791677|gb|EFQ27204.1| DNA topoisomerase [Glomerella graminicola M1.001]
Length = 664
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 113/212 (53%), Gaps = 1/212 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YG CQ PTLGF V RY ++ +F PE+FW++ + G ++ W R +LFD +
Sbjct: 209 YGSCQFPTLGFVVDRYFRVQNFVPEQFWSIKVMHSREGKKVNFNWSRNRLFDRMSVVILY 268
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ ++ + +V + EK K +P L TV L K A+ L Q AM +AE LY +GFI
Sbjct: 269 ERCIRAKKAKVTKVQEKPTRKWKPLPLTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFI 328
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITPM 190
SYPRTE+ + D + + ++ WG++ + LL + +PR G D HPPI P+
Sbjct: 329 SYPRTETDRFDKGMDLKALVRKQTSDNRWGEHAQGLLDSNFHQPREGKHDDKAHPPIHPV 388
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
A +L D +LY YV + FL S D K
Sbjct: 389 TYAAPTVLNPDEKQLYEYVVRRFLACCSDDAK 420
>gi|429861174|gb|ELA35874.1| DNA topoisomerase [Colletotrichum gloeosporioides Nara gc5]
Length = 673
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 1/212 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YG CQ PTLGF V RY ++ +F PE+FW++ + G + W R +LFD +
Sbjct: 209 YGSCQFPTLGFVVDRYFRVQNFVPEQFWSIKVMHNREGKKANFSWSRNRLFDRMSVVILY 268
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ ++ + +V + EK K +P L TV L K A+ L Q AM +AE LY +GFI
Sbjct: 269 ERCIRAKKAKVTKVQEKATRKWKPLPLTTVELQKAATRLLRMSGQQAMTIAENLYNRGFI 328
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITPM 190
SYPRTE+ + D + + + WG+Y E LL +++PR G D HPPI P+
Sbjct: 329 SYPRTETDRFDKGMDLKALVRKQTPHQRWGEYAEGLLNGNFSQPREGRHDDKAHPPIHPV 388
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
A +L + +LY YV + FL S D K
Sbjct: 389 TYAAPSVLKPEEAQLYEYVVRRFLACCSEDAK 420
>gi|255943201|ref|XP_002562369.1| Pc18g05420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587102|emb|CAP94766.1| Pc18g05420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 628
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 1/223 (0%)
Query: 1 MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQK 60
+ A+ ++ YG CQ PTLGF V RYL++ +FKPE FW + L + G ++ W+R
Sbjct: 201 VVAALKEKVISYGSCQFPTLGFVVDRYLRVQNFKPETFWGIKVILSREGKKVNFLWKRVH 260
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
LFD V TM + + + +V +++K SK RP L TV+L + S L Q M+
Sbjct: 261 LFDRAVVTMMLERCLLAKQAKVTKVNQKPTSKWRPLPLTTVDLQMMGSRFLRLDSQTIMK 320
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT- 179
+AE LYT+GFISYPRTE+ + D + + + WG Y L+ + PRSG
Sbjct: 321 VAEALYTKGFISYPRTETDQFDKGIDLKKLVEKQYPDNSWGQYARELIDGKFRTPRSGRH 380
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P+ + + L + ++Y +V + FL S D K
Sbjct: 381 NDKAHPPIHPVSWVSPNQLNANEKKVYEFVVRRFLACCSDDAK 423
>gi|325089089|gb|EGC42399.1| DNA topoisomerase III [Ajellomyces capsulatus H88]
Length = 450
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 115/215 (53%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RY ++ +FKPEKFWT+ V++G + W R L+D
Sbjct: 209 VISYGSCQFPTLGFVVDRYFRVKNFKPEKFWTIKVSHVRDGKTVNFLWRRVHLYDRAAVV 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + +K K RP L TV+L + S L Q M++AE LYT+
Sbjct: 269 ILFERCLTSKTAKVTKVHKKPTRKWRPLPLTTVDLQMMGSRYLRMDSQKVMKIAETLYTK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
GFISYPRTE+ + D + + + WG Y +RL+ + +PR+G + HPPI
Sbjct: 329 GFISYPRTETDQFDKGIDLKKLIEKQIPSENWGQYAQRLINGSFTQPRAGHHNDKAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ A +L D +Y +V + FL S D K
Sbjct: 389 HPVIFAAPTVLSNDERLVYEFVTRRFLACCSEDAK 423
>gi|345487699|ref|XP_001605592.2| PREDICTED: DNA topoisomerase 3-alpha-like [Nasonia vitripennis]
Length = 1138
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 122/217 (56%), Gaps = 4/217 (1%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ +++ YGPCQ PTLGF V+R+L I F+PE +W L +QN ++ W R +LF+
Sbjct: 246 LADMLISYGPCQFPTLGFVVERFLAIERFEPEPYWKLKVTHLQNELNVEFRWARNRLFEK 305
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+F + ++ V ++ K +SK RP L+T+ L K S L + MQ+AE+
Sbjct: 306 LPCEVFLDICQENPQATVEKVTAKPKSKWRPLPLDTIELEKQGSRKLRLSAKETMQIAEK 365
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD- 183
LYT GFISYPRTE+ +P + + N WG + +R+L EG PR G +
Sbjct: 366 LYTGGFISYPRTETNIFPKEMNLSTLVQQQTANGDWGGFAQRVLDEGIT-PRQGKKSDQA 424
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + T+ + G +A R+Y YV +HFL +S +
Sbjct: 425 HPPIHPTK-FTDTLRGNEA-RVYEYVVRHFLACLSKN 459
>gi|169775139|ref|XP_001822037.1| DNA topoisomerase 3 [Aspergillus oryzae RIB40]
gi|238496239|ref|XP_002379355.1| DNA topoisomerase III, putative [Aspergillus flavus NRRL3357]
gi|83769900|dbj|BAE60035.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694235|gb|EED50579.1| DNA topoisomerase III, putative [Aspergillus flavus NRRL3357]
gi|391872962|gb|EIT82037.1| DNA topoisomerase III alpha [Aspergillus oryzae 3.042]
Length = 629
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 1/220 (0%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ I+ YG CQ PTLGF V RYL++ +FKPE FW + ++G ++ W R LFD
Sbjct: 205 ALSEKIISYGSCQFPTLGFVVDRYLRVKNFKPENFWGIKVMHTRDGIKVNFLWRRVHLFD 264
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
T+ + + + +V +++K SK RP L TV+L + S L Q M++AE
Sbjct: 265 RAAVTVMLERCLMAKKAKVTKVNQKPTSKWRPLPLTTVDLQMMGSRYLRMDSQKIMKVAE 324
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
LYT+GFISYPRTE+ + D + + + WG Y LL GY PR+G
Sbjct: 325 ALYTKGFISYPRTETDQFDKGIDLKKLIEKQFPDTNWGQYARGLLDGGYRTPRAGRHNDQ 384
Query: 184 -HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ + L D ++Y +V + FL S D K
Sbjct: 385 AHPPIHPICWVSPTALSADEKKVYEFVVRRFLACCSEDAK 424
>gi|327308726|ref|XP_003239054.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
gi|326459310|gb|EGD84763.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
Length = 630
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 1/220 (0%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ I+ YG CQ PTLGF V RY+++ +FKPE FW++ ++G + W+R LFD
Sbjct: 204 ALAEKIISYGSCQFPTLGFVVDRYMRVKNFKPEAFWSIKVSHTRDGITVNFNWQRGHLFD 263
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ + + + V +++K SK RP L TV+L + S L Q M+ AE
Sbjct: 264 RAAVVVLFERCLAAKTATVTKVNKKPTSKWRPLPLTTVDLQMMGSKYLRIDSQAIMKAAE 323
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
LYT+GFISYPRTE+ + + D + + + WG+Y L+ G+ +PR G +
Sbjct: 324 TLYTKGFISYPRTETDQFDNEIDLKKLVEKQYPSEAWGEYARGLIGGGFKQPRRGRNNDK 383
Query: 184 -HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ + +L + ++Y +V + FL S D K
Sbjct: 384 AHPPIHPVAYVSPTVLSANEKKVYEFVTRRFLACCSEDAK 423
>gi|417405552|gb|JAA49485.1| Putative dna topoisomerase iii beta [Desmodus rotundus]
Length = 999
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHRDGIVEFSWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + L M+D + V+++S K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYHLCMEDPMATVVEVSSKAKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNVFPKDLNLTALVEQQTPDPHWGSFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYTSS--LQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|225560799|gb|EEH09080.1| DNA topoisomerase III [Ajellomyces capsulatus G186AR]
Length = 630
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 115/215 (53%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RY ++ +FKPEKFWT+ V++G + W R L+D
Sbjct: 209 VISYGSCQFPTLGFVVDRYFRVKNFKPEKFWTIKVSHVRDGKTVNFLWRRVHLYDRAAVV 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + +K K RP L TV+L + S L Q M++AE LYT+
Sbjct: 269 ILFERCLTSKTAKVTKVHKKPTRKWRPLPLTTVDLQMMGSRYLRMDSQKVMKIAETLYTK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
GFISYPRTE+ + D + + + WG Y +RL+ + +PR+G + HPPI
Sbjct: 329 GFISYPRTETDQFDKGIDLKKLIEKQIPSENWGQYAQRLINGSFTQPRAGHHNDKAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ A +L D +Y +V + FL S D K
Sbjct: 389 HPVIFAAPTVLSNDERLVYEFVTRRFLACCSEDAK 423
>gi|291224920|ref|XP_002732450.1| PREDICTED: MGC80537 protein-like [Saccoglossus kowalevskii]
Length = 916
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 119/215 (55%), Gaps = 4/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ +G CQ PTLGF V+RY Q+ SF PE F+ + + + W+R +LFD
Sbjct: 209 LISFGSCQFPTLGFVVERYKQVKSFIPETFYRIKVTHATDDGNVDFHWKRHRLFDHTACL 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+F +L M++ + +VI++ + +SK RP ++TV + K+AS L + M++AE+LYT+
Sbjct: 269 VFYQLCMENPLAKVINVQSRNKSKWRPTPMDTVEMEKLASRKLKITAKETMKIAEKLYTK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P D R + +P WG + +L G PR G + HPPI
Sbjct: 329 GFISYPRTETNIFPKELDLRPLVENQVQDPNWGAFAAGVLQHG-PNPRQGKKTDNAHPPI 387
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + + R+Y + +HFL +S D +
Sbjct: 388 HPTKYGNN--FDGNEKRVYELIVRHFLACLSQDAQ 420
>gi|347839519|emb|CCD54091.1| similar to DNA topoisomerase III [Botryotinia fuckeliana]
Length = 665
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 112/215 (52%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L YG CQ PTLGF V RY ++ +F PE FW++ + + W+R +LFD V
Sbjct: 209 MLSYGSCQFPTLGFVVDRYFKVKNFVPEPFWSIKVTHNRENMNVVFNWKRNRLFDRAVVI 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + ++ +V + EK SK +P L TV L K AS L Q+AM AE LYT+
Sbjct: 269 ILFERCLAAKVAKVTKVQEKPTSKWKPLPLTTVELQKAASRWLNMNSQVAMTAAESLYTK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
GFISYPRTE+ + + R + + WG + + L+ G+ PR G D HPPI
Sbjct: 329 GFISYPRTETDRFDKGMNLRALVEKQVQDNRWGPFAQNLVNGGFHWPREGRNDDKAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ L + R+Y +V + FL S D K
Sbjct: 389 HPVTYVASTALRPEEARVYEFVVRRFLACCSEDAK 423
>gi|425769433|gb|EKV07926.1| DNA topoisomerase [Penicillium digitatum Pd1]
gi|425771095|gb|EKV09549.1| DNA topoisomerase [Penicillium digitatum PHI26]
Length = 571
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 1/223 (0%)
Query: 1 MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQK 60
+ A+ ++ YG CQ PTLGF V RYL++ +FKPE FW + L + G ++ W+R
Sbjct: 144 VVAALKEKVISYGSCQFPTLGFVVDRYLRVQNFKPETFWGIKVILSREGKKVNFLWKRVH 203
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
LFD V TM + + + +V +S+K SK RP L TV+L + S L Q M+
Sbjct: 204 LFDRAVVTMMLERCLVAKQAKVTKVSQKPTSKWRPLPLTTVDLQMMGSRFLRLDSQTIMK 263
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT- 179
+AE LYT+GFISYPRTE+ + + D + + + WG Y L+ + PR G
Sbjct: 264 VAEALYTKGFISYPRTETDQFDKAIDLKKLIEKQYPDSSWGQYARELVDGKFRTPRFGRH 323
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P+ + + L + ++Y +V + FL S D K
Sbjct: 324 NDKAHPPIHPVSWVSPNQLNANEKKVYEFVVRRFLACCSDDAK 366
>gi|405967245|gb|EKC32429.1| DNA topoisomerase 3-alpha [Crassostrea gigas]
Length = 1950
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 126/221 (57%), Gaps = 5/221 (2%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKLEWERQKLF 62
A+ ++ YG CQ PTLGF V+RY Q+ +F PE FW + ++ + + W+R +LF
Sbjct: 150 ALADKLISYGSCQFPTLGFVVERYKQVQAFIPEPFWKIKVTHMFDEETKCEFSWKRNRLF 209
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D + + + +++ V+++ K +SK RP L+TV + K+AS L + M++A
Sbjct: 210 DHNACLILYEQCVENPQATVMEVKCKPKSKWRPTPLDTVEMEKLASRKLRLSAKETMRIA 269
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
E LYT+GFISYPRTE+ +P D + + +P WG + +L + PR+G +
Sbjct: 270 ENLYTKGFISYPRTETNIFPKDLDLAALVQEQSRDPNWGGFASGILQD-RPNPRNGNKSD 328
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P++ T + G DA RLY ++ +HFL T S D +
Sbjct: 329 QAHPPIHPIK-YTATLQGNDA-RLYEFIVRHFLATCSKDAQ 367
>gi|240280657|gb|EER44161.1| DNA topoisomerase III [Ajellomyces capsulatus H143]
Length = 630
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 115/215 (53%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RY ++ +FKPEKFWT+ V++G + W R L+D
Sbjct: 209 VISYGSCQFPTLGFVVDRYFRVKNFKPEKFWTIKVSHVRDGKTVNFLWRRVHLYDRAAVV 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + +K K RP L TV+L + S L Q M++AE LYT+
Sbjct: 269 ILFERCLTSKTAKVTKVHKKPTRKWRPLPLTTVDLQMMGSRYLRMDSQKVMKIAETLYTK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
GFISYPRTE+ + D + + + WG Y +RL+ + +PR+G + HPPI
Sbjct: 329 GFISYPRTETDQFDKGIDLKKLIEKQIPSENWGQYAQRLINGSFTQPRAGHHNDKAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ A +L D +Y +V + FL S D K
Sbjct: 389 HPVIFAAPTVLSNDERLVYEFVTRRFLACCSEDAK 423
>gi|402225468|gb|EJU05529.1| prokaryotic type I DNA topoisomerase [Dacryopinax sp. DJM-731 SS1]
Length = 866
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQ PTLGF V RY Q+ +F PE FW ++ ++ +G E W R LFDF
Sbjct: 202 MISYGPCQFPTLGFVVSRYQQVQAFVPETFWYIYLSIMVDGEETDFTWRRGHLFDFPATL 261
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+L ++ + +++K K RP L TV L K AS L P+ + +A+ LY++
Sbjct: 262 ALYELCVESPEATIAQVTKKPTKKWRPLPLTTVELQKSASRLLRLTPKRILDIADDLYSK 321
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
GF+SYPRTE+ + FDF + +P WG + + L G+ PR G + HPPI
Sbjct: 322 GFLSYPRTETDQFDPDFDFMTLIQKQTTDPAWGQFAQSLANGGFNAPRKGKKNDKAHPPI 381
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P T +++G D R+Y YV + FL + S D +
Sbjct: 382 HPTAHVT-NLVGDDK-RVYEYVTRRFLASCSKDAE 414
>gi|380486032|emb|CCF38971.1| DNA topoisomerase, partial [Colletotrichum higginsianum]
Length = 462
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 3/213 (1%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVATMF 70
YG CQ PTLGF V RY ++ +F PE+FW++ + G ++ W R +LFD V ++
Sbjct: 209 YGSCQFPTLGFVVDRYFRVQNFVPEQFWSIKVMHSREGKKVNFNWSRNRLFDRMSVIILY 268
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
++ + ++ V + EK K +P L TV L K A+ L Q AM +AE LY +GF
Sbjct: 269 ERCIRANKAT-VTKVQEKPTRKWKPLPLTTVELQKAATRLLRMSGQQAMTVAEGLYNKGF 327
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITP 189
ISYPRTE+ + D + + + WG+Y + LL + +PR G D HPPI P
Sbjct: 328 ISYPRTETDRFDKGIDLKALVRKQTPDNRWGEYAQGLLDGNFQQPREGKHDDKAHPPIHP 387
Query: 190 MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ A +L D +LY YV + FL S D K
Sbjct: 388 VTYAAPTVLNADERQLYEYVVRRFLACCSEDAK 420
>gi|358378931|gb|EHK16612.1| hypothetical protein TRIVIDRAFT_162256 [Trichoderma virens Gv29-8]
Length = 660
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 1/216 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L+L YG CQ PTLGF V RY ++ +F PE FW + + G +++ W R +LFD
Sbjct: 202 LVLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWGISLMHNKEGKQVRFSWARNRLFDRMTV 261
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + + +V + EK K +P L TV L K A+ L Q AM +AE LY
Sbjct: 262 VLLYERCLAAKKAKVTKVQEKPTRKFKPLPLTTVELQKAATRLLRMSGQQAMTIAEGLYN 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ + + + + + WG + + L+ G+ +PR G D HPP
Sbjct: 322 KGFISYPRTETDRFDKGMNLKALVQKQTTDQRWGPFAQGLVNGGFQQPREGKHDDKAHPP 381
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ L D RLY YV + FL + D K
Sbjct: 382 IHPIAHVAPTTLTYDEGRLYEYVTRRFLACCAEDAK 417
>gi|292611936|ref|XP_688695.4| PREDICTED: DNA topoisomerase 3-alpha [Danio rerio]
Length = 998
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 125/216 (57%), Gaps = 4/216 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ YG CQ PTLGF V+R+ I +F PE F+ + N E ++ W+R +LF+
Sbjct: 235 LISYGSCQFPTLGFVVERFKAIQAFIPETFFKIKVVHEPNEEESVEFNWKRHRLFNHTAC 294
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ ++ M++ + +VI ++ K +SK RP L+TV L K+AS L + M++AE+LYT
Sbjct: 295 LVLYQMCMEEPMAKVISVTSKPKSKWRPLPLDTVELEKLASRKLRISAKETMKIAEKLYT 354
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
QGFISYPRTE+ +P + + + + WG++ +R+L G PR+G + HPP
Sbjct: 355 QGFISYPRTETNMFPQNLNLTRLVEQQTQDQEWGNFAQRILESGGPTPRNGNKSDQAHPP 414
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P + T + G + RLY ++ +HFL S D +
Sbjct: 415 IHPTK-YTNGLQGNEK-RLYEFIVRHFLACCSKDAQ 448
>gi|417412874|gb|JAA52796.1| Putative dna topoisomerase iii alpha, partial [Desmodus rotundus]
Length = 837
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 67 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHRDGIVEFSWKRH 126
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + L M+D + V+++S K +SK RP L+TV L K+AS L + M
Sbjct: 127 RLFNHTACLVLYHLCMEDPMATVVEVSSKAKSKWRPQALDTVELEKLASRKLRINAKETM 186
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 187 RIAEKLYTQGYISYPRTETNVFPKDLNLTALVEQQTPDPHWGSFAQSILERGGPTPRNGN 246
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 247 KSDQAHPPIHPTKYTSS--LQGDEQRLYEFIVRHFLACCSQDAQ 288
>gi|344298058|ref|XP_003420711.1| PREDICTED: DNA topoisomerase 3-alpha [Loxodonta africana]
Length = 1006
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 10/223 (4%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEW 56
+F V+ LI YG CQ PTLGF V+R+ I +F PE F H V + +E ++ W
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPETF---HRIKVTHEHEDGIVEFNW 285
Query: 57 ERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQ 116
+R +LF+ + +L M+D V+++ K +SK RP L+TV L K+AS L +
Sbjct: 286 KRHRLFNHTACLVLYQLCMEDPTATVVEVCSKPKSKWRPQALDTVELEKLASRKLRINAK 345
Query: 117 MAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
M++AERLYTQG+ISYPRTE+ +P + + +P WG + + +L G PR
Sbjct: 346 ETMRIAERLYTQGYISYPRTETNIFPKDLNLTALVEQQIQDPRWGAFAQSILERGGPTPR 405
Query: 177 SGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
+G + HPPI P + + L D RLY ++ +HFL S
Sbjct: 406 NGNKSDQAHPPIHPTKHTSN--LQGDEQRLYEFIVRHFLACCS 446
>gi|321463458|gb|EFX74474.1| hypothetical protein DAPPUDRAFT_324341 [Daphnia pulex]
Length = 1025
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 120/216 (55%), Gaps = 4/216 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ YG CQ PTLGF V+RY I F E FW L N E ++ W+R LFD V
Sbjct: 208 LISYGSCQFPTLGFIVERYKAIQDFVRENFWKLKVVWELNEEERVEFLWKRHHLFDQTVV 267
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + ++ E+I + K +SK RP L+TV L K+AS L + M++AE+LYT
Sbjct: 268 QILLEKCQENPEAEIIKVQTKNKSKWRPLPLDTVELEKLASRKLRINAKETMKIAEKLYT 327
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
QGFISYPRTE+ +P D + +P WG + +R+L EG PR G + HPP
Sbjct: 328 QGFISYPRTETNIFPKELDLTPLVQCQTVDPAWGGFAQRVLDEGL-NPRQGKKSDQAHPP 386
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P + A ++ ++ +LY ++ +HFL VS D +
Sbjct: 387 IHPTKYAG-NLSNENERKLYEFIVRHFLACVSKDAQ 421
>gi|406867141|gb|EKD20180.1| DNA topoisomerase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 671
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 113/215 (52%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RY ++ +F PE FW++ ++ ++ W+R +LFD +
Sbjct: 217 VISYGSCQFPTLGFVVDRYFRVRNFVPETFWSIKVTHRRDDMDVVFNWKRSRLFDRAIVV 276
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + EK SK RP L TV K AS L AM +AE LY +
Sbjct: 277 IIFERCIAAKTAKVTRVHEKPTSKWRPLPLTTVEFQKNASRFLRMNSSTAMSVAEGLYQK 336
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
GFISYPRTE+ + D R + + WG Y + L+A G+ +PR G D HPPI
Sbjct: 337 GFISYPRTETDRFDKGIDLRALVEKQVQDGRWGGYAQGLVAGGFKQPRQGRNDDKAHPPI 396
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ + L + R+Y ++ + FL S D K
Sbjct: 397 HPVTWVAPNTLNPEEGRVYEFITRRFLACCSEDAK 431
>gi|449521062|ref|XP_004167550.1| PREDICTED: DNA topoisomerase 3-like, partial [Cucumis sativus]
Length = 607
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 117/217 (53%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
++L YGPCQ PTLGF V+RY +I S +PE+FWT++ + W R LFD+
Sbjct: 214 NIVLSYGPCQFPTLGFVVERYWEIQSHEPEEFWTINCSHNSDDGISTFSWTRGNLFDYTC 273
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A +F ++ +Q+ V+++ ++ K P LNT+ L K AS + M++AE LY
Sbjct: 274 AVVFYEMCVQESTATVVNVRRQETLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEDLY 333
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPR-SGTDAG 182
GFISYPRTE+ + D G + + +WG Y +RLL + + P G D
Sbjct: 334 QAGFISYPRTETDCFSQRTDLHGIVREQQEHQIWGAYAQRLLDPESRLWRNPSGGGHDDK 393
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + SA E +D RLY V +HFL VS
Sbjct: 394 AHPPIHPTKFSAGERGWSQDHHRLYELVVRHFLACVS 430
>gi|431914498|gb|ELK15748.1| DNA topoisomerase 3-alpha [Pteropus alecto]
Length = 1007
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I SF PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQSFVPEIFHKIKVTHDHRDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D V+++S K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPTATVVEVSSKAKSKWRPQALDTVELEKLASRKLKINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTALVEQQIPDPRWGAFAQSILERGVPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L + RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYTSS--LQGEEQRLYEFIVRHFLACCSQDAQ 450
>gi|348560295|ref|XP_003465949.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cavia porcellus]
Length = 1002
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 121/218 (55%), Gaps = 9/218 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEWERQKLFDFD 65
++ YG CQ PTLGF V+R+ I +F PE F H V + +E + W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEIF---HRIKVTHDHEDGIVDFNWKRHRLFNHT 294
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ +L M+D + V+++ K +SK RP L+TV L K+AS L + M++AE+L
Sbjct: 295 ACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLKINAKETMRIAEKL 354
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-H 184
YTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G + H
Sbjct: 355 YTQGYISYPRTETNIFPKDLNLMALVEQQTQDPHWGPFAQSILERGGPTPRNGNKSDQAH 414
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PPI P + + L D RLY ++ +HFL S D +
Sbjct: 415 PPIHPTKYTSN--LQGDERRLYEFIVRHFLACCSQDAQ 450
>gi|327356144|gb|EGE85001.1| DNA topoisomerase [Ajellomyces dermatitidis ATCC 18188]
Length = 630
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 1/220 (0%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ ++ YG CQ PTLGF V RY ++ +FKPEKFW++ ++G + W R LFD
Sbjct: 204 ALEDRVISYGSCQFPTLGFVVDRYFRVKNFKPEKFWSIKVSHARDGKTVNFLWRRVHLFD 263
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ + + + +V +++K K RP L TV+L + S L Q M++AE
Sbjct: 264 RAAVVVLFERCLTSKTAKVTKVNKKPTRKWRPLPLTTVDLQMMGSRYLRMDSQKVMKIAE 323
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAG 182
LYT+GFISYPRTE+ + D + + + WG Y +RL+ + +PR+G +
Sbjct: 324 ALYTKGFISYPRTETDQFDKGIDLKKLVEKQIPSENWGQYAQRLMNGAFTQPRAGRHNDK 383
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ A L D +Y +V + FL S D K
Sbjct: 384 AHPPIHPVIFAAPSALNADERAVYEFVTRRFLACCSEDAK 423
>gi|449437640|ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus]
Length = 925
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 117/217 (53%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
++L YGPCQ PTLGF V+RY +I S +PE+FWT++ + W R LFD+
Sbjct: 214 NIVLSYGPCQFPTLGFVVERYWEIQSHEPEEFWTINCSHNSDDGISTFSWTRGNLFDYTC 273
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A +F ++ +Q+ V+++ ++ K P LNT+ L K AS + M++AE LY
Sbjct: 274 AVVFYEMCVQESTATVVNVRRQETLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEDLY 333
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPR-SGTDAG 182
GFISYPRTE+ + D G + + +WG Y +RLL + + P G D
Sbjct: 334 QAGFISYPRTETDCFSQRTDLHGIVREQQEHQIWGAYAQRLLDPESRLWRNPSGGGHDDK 393
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + SA E +D RLY V +HFL VS
Sbjct: 394 AHPPIHPTKFSAGERGWSQDHHRLYELVVRHFLACVS 430
>gi|328766432|gb|EGF76486.1| hypothetical protein BATDEDRAFT_14853, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 612
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 111/211 (52%), Gaps = 3/211 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL YGPCQ PTLGF V R+ ++ SF PEKFW++ + +NG W R LF+ +
Sbjct: 197 ILSYGPCQFPTLGFVVDRFRKVQSFIPEKFWSITLEVTRNGLRAVFGWSRNHLFNRHIVL 256
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+L M++ + + + K +SK P L TV L KV S L MQ+AE LY +
Sbjct: 257 ALYELCMKNPVCTISKVEAKPKSKWAPLPLTTVELQKVGSRFLHMSSDRVMQVAEALYNR 316
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G +SYPRTE+ + FD + + WG Y LL + KPR G + HPPI
Sbjct: 317 GIVSYPRTETDCFDDKFDLMPLIEKQTQSQEWGSYAASLLNGKFTKPRKGKNNDQAHPPI 376
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
P+R+A + L D +++ Y+ + FL S
Sbjct: 377 HPVRAAFD--LSGDEKKVFDYITRRFLACCS 405
>gi|19113553|ref|NP_596761.1| DNA topoisomerase III [Schizosaccharomyces pombe 972h-]
gi|6686026|sp|O60126.2|TOP3_SCHPO RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|4388617|emb|CAA19038.1| DNA topoisomerase III [Schizosaccharomyces pombe]
gi|5836087|gb|AAD22485.2| topoisomerase 3 [Schizosaccharomyces pombe]
Length = 622
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YGPCQ PTLGF V R+ ++ F PE +W L + G ++ WER K+FD
Sbjct: 206 IISYGPCQFPTLGFVVDRWQRVEDFVPETYWHLRFVDKRQGKTIQFNWERAKVFDRLTTM 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + ++ + +V++I++K ++K +P L+TV L K+ L + ++LAE LYT
Sbjct: 266 IILENCLECKTAKVVNITQKPKTKYKPLPLSTVELTKLGPKHLRISAKKTLELAENLYTN 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPI 187
GF+SYPRTE+ + SS + + L W Y E LLA Y PR G + HPPI
Sbjct: 326 GFVSYPRTETDQFDSSMNLHAIIQKLTGAQEWDSYAEGLLAGDYRPPRKGKHNDRAHPPI 385
Query: 188 TPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCK 222
P++ L +D W++Y + + FL S + K
Sbjct: 386 HPVQMVHRSALPSQDHWKVYELITRRFLACCSDNAK 421
>gi|402086932|gb|EJT81830.1| DNA topoisomerase III [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 671
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 115/218 (52%), Gaps = 4/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L YG CQ PTLGF V RY ++ +F PE FWT+ + ++G W R +LFD
Sbjct: 207 MLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWTIKLVVSKDGKTATFNWTRGRLFDRVSVV 266
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + EK K +P L TV L K+A+ L Q AM +AE+LY +
Sbjct: 267 ILYERCLSAKTAKVTKVQEKPTKKWKPLPLTTVELQKMATRFLRITGQQAMDVAEKLYQK 326
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPI 187
GFISYPRTE+ + + R + + WG + + L+ G+ +PR+G D HPPI
Sbjct: 327 GFISYPRTETDRFDKGMNLRALVQKQTQDGRWGTFAQGLMDGGFQQPRNGKHDDKAHPPI 386
Query: 188 TPMRSATEDML---GKDAWRLYSYVCQHFLGTVSPDCK 222
P+ A L G +A RLY V + FL S D K
Sbjct: 387 HPITYAASGALNDVGPEAGRLYELVVRRFLACCSEDAK 424
>gi|290980003|ref|XP_002672722.1| predicted protein [Naegleria gruberi]
gi|284086301|gb|EFC39978.1| predicted protein [Naegleria gruberi]
Length = 1015
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 121/224 (54%), Gaps = 7/224 (3%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLE--WERQ 59
F + + YGPCQ PTLGF V+R L I +F+ E FWTL+ G E K + W+R
Sbjct: 225 FQGITADYISYGPCQFPTLGFVVKRDLIIKNFESESFWTLN-CTHDMGEEGKAQFLWKRG 283
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LFD + +L ++ + V+++ +K+ K RP LNT+ L K+AS L G M
Sbjct: 284 RLFDQLTCLVIYELCVEAQRARVVNVEKKRRYKYRPDPLNTIELQKLASQKLKMGSHETM 343
Query: 120 QLAERLYTQGFISYPRTESTAYP--SSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRS 177
++AE LY +GFISYPRTE+ Y D + ++ +NP WG Y LL GY KP S
Sbjct: 344 KVAESLYNKGFISYPRTETNNYNQFQDDDLKRLVNEHTSNPTWGGYASDLLNGGYQKPPS 403
Query: 178 GT-DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
G D HPPI P++ K+ LY + +HFL S D
Sbjct: 404 GKQDDKAHPPIHPLKGDCNSNDSKEQA-LYELIARHFLACCSKD 446
>gi|403411970|emb|CCL98670.1| predicted protein [Fibroporia radiculosa]
Length = 929
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 111/218 (50%), Gaps = 7/218 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG----YELKLEWERQKLFDF 64
I+ YGPCQ PTLGF V RY Q+ SF PE FW + L E W+R LF+F
Sbjct: 202 IISYGPCQFPTLGFVVSRYNQVKSFVPETFWYIFLSLTTQSPTGDEETVFNWKRGHLFEF 261
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
D+A + + V+ + V + K K +P L TV L K S L P+ + +AER
Sbjct: 262 DIAMILYEDVLAAPVARVTRVITKDTKKWKPLPLTTVELQKKGSRLLRISPKQILDIAER 321
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LY QG +SYPRTE+ Y FDF + +PVWG + RL + +PR G +
Sbjct: 322 LYQQGILSYPRTETDQYDPQFDFMTLVGKQTVDPVWGTFASRLQNGQFGRPRGGQKNDKA 381
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
HPPI P +A L D R+Y Y+ + FL S D
Sbjct: 382 HPPIHP--TAYAGNLAGDDKRVYEYITRRFLACCSKDA 417
>gi|426237677|ref|XP_004012784.1| PREDICTED: DNA topoisomerase 3-alpha [Ovis aries]
Length = 1002
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F + ++ W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIRVTHDHRDGVVEFSWKRHRLFNHTACL 297
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +L M+D V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 298 VLYQLCMEDPRATVVEVRSKAKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQ 357
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P D + +P WG + +L G PR+G + HPPI
Sbjct: 358 GYISYPRTETNIFPKDLDLAALVEQQIPDPRWGAFARNILERGGPTPRNGNKSDQAHPPI 417
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + D L D RLY + +HFL S D +
Sbjct: 418 HPTKYT--DSLQGDEQRLYELIVRHFLACCSQDAQ 450
>gi|73956193|ref|XP_546656.2| PREDICTED: DNA topoisomerase 3-alpha [Canis lupus familiaris]
Length = 989
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHKIKVTHDHKDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPTATVVEVRSKSKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P D + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPKDLDLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYTSS--LQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|428672326|gb|EKX73240.1| DNA topoisomerase III, putative [Babesia equi]
Length = 622
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 123/219 (56%), Gaps = 2/219 (0%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKL 61
F+ + +L YGPCQ PTLGF V R+ +I +F E++W+++ +V + W+R +L
Sbjct: 197 FLNTKSNVLSYGPCQLPTLGFVVDRFKRIENFVREEYWSINVEVVLEETPVSFLWDRVRL 256
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
FD ++ +++ + V I+++Q K P L+TV + K L MQL
Sbjct: 257 FDGQAVLTLYEVCLENPLAFVTRINKRQTKKYPPLPLDTVEMNKTVCKYLKISSSQCMQL 316
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE LY++GFISYPRTE+ +P S D +++L+N+P +G+Y +RL+ + P G
Sbjct: 317 AESLYSKGFISYPRTETNIFPQSIDLMSLINSLSNHPTFGEYAKRLVDGDFCVPVMGKKN 376
Query: 182 GD-HPPITPMRSAT-EDMLGKDAWRLYSYVCQHFLGTVS 218
+ HPPI P++S T + W+LY Y+ + FL S
Sbjct: 377 DEAHPPIHPVKSMTSSEAESPLHWQLYEYITRRFLACCS 415
>gi|302916113|ref|XP_003051867.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732806|gb|EEU46154.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 653
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 110/216 (50%), Gaps = 1/216 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L L YG CQ PTLGF V RY ++ +F PE FW++ + G +++ W R +LFD
Sbjct: 202 LTLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWSIKVMHNREGKKVEFSWLRNRLFDRMST 261
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + + V + EK K +P L TV L K A+ L Q AM +AE LY
Sbjct: 262 VILYERCLAAKTATVTKVQEKPTRKFKPLPLTTVELQKAATRLLRMSGQQAMTIAEGLYN 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ + + R + + WG + + L + +PR G D HPP
Sbjct: 322 KGFISYPRTETDRFDRGMNLRALVQKQTPDERWGTFAQGLANGAFQQPREGRHDDKAHPP 381
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ A +L D RLY YV + FL S D K
Sbjct: 382 IHPITYAAPSVLSFDEGRLYEYVVRRFLACCSDDAK 417
>gi|440913082|gb|ELR62586.1| DNA topoisomerase 3-alpha [Bos grunniens mutus]
Length = 1002
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIRVTHDHRDGVVEFSWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + ++ M+D V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQMCMEDPRATVVEVRSKAKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P D + +P WG + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQTPDPRWGAFARNILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + D L D RLY + +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--DSLQGDEQRLYELIVRHFLACCSQDAQ 450
>gi|367027160|ref|XP_003662864.1| hypothetical protein MYCTH_2303986 [Myceliophthora thermophila ATCC
42464]
gi|347010133|gb|AEO57619.1| hypothetical protein MYCTH_2303986 [Myceliophthora thermophila ATCC
42464]
Length = 668
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 111/217 (51%), Gaps = 1/217 (0%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
L L YG CQ PTLGF V RY ++ +F PE FW + ++G ++ W R +LFD
Sbjct: 205 NLTLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWGIKVMHERDGIQVGFNWSRHRLFDRMS 264
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ + + R +V + EK K +P L TV L K+A+ L Q AM +AE+LY
Sbjct: 265 VVILYERCLAARTAKVTKVQEKPTKKWKPLPLTTVELQKMATRFLRMSGQQAMTVAEKLY 324
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHP 185
+GFISYPRTE+ + D R + + WG + + L+ + +PR G D HP
Sbjct: 325 NKGFISYPRTETDRFDKGMDLRALVRKQTQDNRWGSFAQALVDGAFQQPRQGRHDDKAHP 384
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P+ A L + R+Y V + FL S D +
Sbjct: 385 PIHPITYAAPAALDDNEKRVYELVTRRFLACCSEDAR 421
>gi|367050678|ref|XP_003655718.1| hypothetical protein THITE_2119715 [Thielavia terrestris NRRL 8126]
gi|347002982|gb|AEO69382.1| hypothetical protein THITE_2119715 [Thielavia terrestris NRRL 8126]
Length = 667
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 112/217 (51%), Gaps = 1/217 (0%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
L + YG CQ PTLGF V RY ++ +F PE FW + ++G ++ W R +LFD
Sbjct: 205 NLTISYGSCQFPTLGFVVDRYFRVKNFVPEAFWGIKMMHERDGIKVNFNWARHRLFDRMA 264
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ + + R +V + E+ K +P L TV L K+A+ L Q AM +AE+LY
Sbjct: 265 VVILYERCLAARTAKVTKVQERPTKKWKPLPLTTVELQKMATRFLRMSGQQAMTVAEKLY 324
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHP 185
+GFISYPRTE+ + D R + + WG + + L+ G+ +PR G D HP
Sbjct: 325 NKGFISYPRTETDRFDKGMDLRALVRKQIQDNRWGQFAQNLVDGGFQQPREGRHDDKAHP 384
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P+ A +L R+Y + + FL S D +
Sbjct: 385 PIHPITYAAPTVLDDGERRVYELITRRFLACCSQDAQ 421
>gi|281201507|gb|EFA75716.1| DNA topoisomerase III [Polysphondylium pallidum PN500]
Length = 1103
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 123/217 (56%), Gaps = 8/217 (3%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELK---LEWERQKLFDFDVA 67
YGPCQ PTLGF V+R L+I F PE FW + + + E++ W+R++LF+ A
Sbjct: 537 YGPCQFPTLGFVVERALRIERFVPEDFWVIDVSHQKKADGEMRTADFGWKRKRLFELAPA 596
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + + + + V+D++ K E++ RP L T+ L K+AS L M+LAE LY
Sbjct: 597 FIFYEQCLDNPLATVVDVNVK-ENRYRPVPLTTIELQKLASKKLRISSDETMKLAEELYN 655
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ ++ DF G + +N WG Y + LL G+ +P+ G + HPP
Sbjct: 656 KGFISYPRTETDSFLPETDFMGLIRLQTDNQKWGGYAQSLLNGGFVRPKEGKHNDNSHPP 715
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
I P +A + GK A LY ++C+ FL S + Y
Sbjct: 716 IHPTGAANA-LSGKQA-NLYEFICRRFLACCSKESIY 750
>gi|118151044|ref|NP_001071443.1| DNA topoisomerase 3-alpha [Bos taurus]
gi|117306502|gb|AAI26548.1| Topoisomerase (DNA) III alpha [Bos taurus]
Length = 1002
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIRVTHDHRDGVVEFSWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + ++ M+D V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQMCMEDPRAMVVEVRSKAKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P D + +P WG + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQTPDPRWGAFARNILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + D L D RLY + +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--DSLQGDEQRLYELIVRHFLACCSQDAQ 450
>gi|296476590|tpg|DAA18705.1| TPA: topoisomerase (DNA) III alpha [Bos taurus]
Length = 1002
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIRVTHDHRDGVVEFSWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + ++ M+D V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQMCMEDPRAMVVEVRSKAKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P D + +P WG + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQTPDPRWGAFARNILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + D L D RLY + +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--DSLQGDEQRLYELIVRHFLACCSQDAQ 450
>gi|74216779|dbj|BAE37792.1| unnamed protein product [Mus musculus]
Length = 694
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 119/215 (55%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F + ++ W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHKDGTVEFNWKRYRLFNHTACL 297
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +L M+D + V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 298 VLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQ 357
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P + + +P WG + + +L G PR+G+ + HPPI
Sbjct: 358 GYISYPRTETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRNGSKSDQAHPPI 417
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + + L D RLY ++ +HFL S D +
Sbjct: 418 HPTKYTSG--LQGDDRRLYEFIVRHFLACCSQDAQ 450
>gi|354545471|emb|CCE42199.1| hypothetical protein CPAR2_807480 [Candida parapsilosis]
Length = 615
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 116/217 (53%), Gaps = 4/217 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
I YG CQ PTLGF V RY ++ +FKPE FW + P L + W + +FD V
Sbjct: 205 IASYGTCQFPTLGFVVDRYKRVKNFKPEPFWYIEPMLRKESKRTTFSWVKGHIFDKLYVL 264
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
M+++ + ++ E+ + KQ + RP L TV L K + + ++ AE+LY
Sbjct: 265 LMYERCLKHEQ-GEITKLETKQTTNYRPLPLTTVELQKDCAKYFKMSAKATLEAAEKLYN 323
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GF+SYPRTE+ YP + DF+G +P WG Y E LL G+ +PR+G+ D HP
Sbjct: 324 RGFLSYPRTETDKYPPTMDFKGIFEKQKQDPRWGPYSEGLLNNGHEQPRNGSHDDHAHPA 383
Query: 187 ITPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ + D L + ++Y YV + FL S D K
Sbjct: 384 IHPVNYVSIDSLQTTNEKKVYEYVVRRFLACCSKDAK 420
>gi|351707720|gb|EHB10639.1| DNA topoisomerase 3-alpha [Heterocephalus glaber]
Length = 991
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F + + W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHEDGAVDFNWKRHRLFNHTACL 297
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +L M+D + V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 298 VLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQ 357
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P + + +P WG + + +L G PR+G + HPPI
Sbjct: 358 GYISYPRTETNIFPRDLNLMALVEQQTQDPDWGAFAQSILERGGPTPRNGNKSDQAHPPI 417
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + + L D RLY + +HFL S D +
Sbjct: 418 HPTKYTSN--LQGDEQRLYELIVRHFLACCSQDAQ 450
>gi|397476895|ref|XP_003809826.1| PREDICTED: DNA topoisomerase 3-alpha isoform 1 [Pan paniscus]
Length = 1001
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHRDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D I V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPIATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|225684061|gb|EEH22345.1| DNA topoisomerase III [Paracoccidioides brasiliensis Pb03]
Length = 710
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 118/216 (54%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YG CQ PTLGF V RY ++ +FKPE FW + +++G + W R +FD A
Sbjct: 204 IISYGSCQFPTLGFVVDRYFRVKNFKPEPFWAIKVSHLRDGKTVNFLWRRVHVFDRAAAV 263
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V +++K K RP L TV+L + S L Q M++AE LYT+
Sbjct: 264 VLFERCLSAKTAKVTKVNKKPTRKWRPLPLTTVDLQMMGSKYLRMDSQKVMKIAEGLYTK 323
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ + D + + ++ WG Y +RL+ + +PR+G + HPPI
Sbjct: 324 GFISYPRTETDQFDKGIDLKKLVEKQISSENWGQYAQRLIDGAFTQPRAGRHNDNAHPPI 383
Query: 188 TP-MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + +A + +D R+Y +V + FL S D K
Sbjct: 384 HPVIYAAPAALSSEDERRVYEFVSRRFLACCSEDAK 419
>gi|389632279|ref|XP_003713792.1| DNA topoisomerase III [Magnaporthe oryzae 70-15]
gi|351646125|gb|EHA53985.1| DNA topoisomerase III [Magnaporthe oryzae 70-15]
Length = 669
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 4/219 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L+L YG CQ PTLGF V RY ++ +F PE FW++ + ++G W R +LFD
Sbjct: 206 LVLSYGSCQFPTLGFVVDRYFRVKNFVPETFWSIKLSIKKDGKTGNFTWTRGRLFDRASV 265
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + ++ + VI + EK K +P L TV L K+A+ + Q M++AE+LY
Sbjct: 266 VILYERCIEAKTATVIKVQEKPTRKWKPLPLTTVELQKMATKFIRISGQQTMEIAEKLYQ 325
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ + + R + + WG + + L+ G+ +PR+G D HPP
Sbjct: 326 KGFISYPRTETDRFDKGMNLRTLVQKQTQDGRWGPFAQGLVDGGFQQPRNGRHDDKAHPP 385
Query: 187 ITPMRSATEDML---GKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ AT L G +A R+Y + + FL S D +
Sbjct: 386 IHPITYATGAALSEIGAEAGRVYELIVRRFLACCSEDAQ 424
>gi|91089373|ref|XP_973578.1| PREDICTED: similar to topoisomerase (DNA) III alpha [Tribolium
castaneum]
gi|270012533|gb|EFA08981.1| hypothetical protein TcasGA2_TC006688 [Tribolium castaneum]
Length = 951
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 110/213 (51%), Gaps = 3/213 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY I F PE FW + N + W+R +LFD +
Sbjct: 205 LISYGSCQFPTLGFVVERYQAIQDFIPEPFWKIKMNHTVNDITTEFTWKRDRLFDKNACE 264
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + V + K +SK RP L+TV + K S L + M++AE+LYTQ
Sbjct: 265 AILDICKESPNATVEKVEGKPKSKWRPLPLDTVEMEKTVSRKLKITAKDTMKIAEKLYTQ 324
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G ISYPRTE+ +P + ++ N+ WG + R++ EG PR G + HPPI
Sbjct: 325 GLISYPRTETNIFPKELNLANLVTLQQNDQRWGAFAHRIMNEGGPAPRQGKKSDQAHPPI 384
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
P + A D L + R+Y Y+ +HFL V D
Sbjct: 385 HPTKHA--DNLTGNEQRVYEYIVRHFLACVHKD 415
>gi|239608653|gb|EEQ85640.1| DNA topoisomerase III [Ajellomyces dermatitidis ER-3]
Length = 674
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 112/215 (52%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY ++ +F PE FW++ + G + W R+ LFD A
Sbjct: 216 LISYGSCQFPTLGFIVERYWRVRNFIPEPFWSIKLMHRKAGTRVNFSWARKHLFDRRTAV 275
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + SK +P L T+ L K S G Q +QLAE+LY +
Sbjct: 276 ILYERCLTSQNAQVQKVKTTPTSKWKPLPLTTLELQKCGSRFFGMDSQKVLQLAEKLYQK 335
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
G+ISYPRTE+ + D RG + A W DY L+ G++ PR+G D HPPI
Sbjct: 336 GWISYPRTETDQFDRGMDLRGLVQKQAQGGRWADYATALVEGGFSWPRNGHNDDKAHPPI 395
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ L + R++ +V +HFL S D +
Sbjct: 396 HPVNFVNPTTLSHEEQRVHEFVVRHFLACCSKDAQ 430
>gi|226293455|gb|EEH48875.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
Length = 632
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 118/216 (54%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YG CQ PTLGF V RY ++ +FKPE FW + +++G + W R +FD A
Sbjct: 209 IISYGSCQFPTLGFVVDRYFRVKNFKPEPFWAIKVSHLRDGKTVNFLWRRVHVFDRAAAV 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V +++K K RP L TV+L + S L Q M++AE LYT+
Sbjct: 269 VLFERCLSAKTAKVTKVNKKPTRKWRPLPLTTVDLQMMGSKYLRMDSQKVMKIAEGLYTK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ + D + + ++ WG Y +RL+ + +PR+G + HPPI
Sbjct: 329 GFISYPRTETDQFDKGIDLKKLVEKQISSEDWGQYAQRLMDGAFTQPRAGRHNDNAHPPI 388
Query: 188 TP-MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + +A + +D R+Y +V + FL S D K
Sbjct: 389 HPVIYAAPAALSSEDERRVYEFVSRRFLACCSEDAK 424
>gi|448521188|ref|XP_003868447.1| Top3 protein [Candida orthopsilosis Co 90-125]
gi|380352787|emb|CCG25543.1| Top3 protein [Candida orthopsilosis]
Length = 617
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 115/217 (52%), Gaps = 4/217 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
I YG CQ PTLGF V RY ++ SFKPE FW + P L + W + +FD V
Sbjct: 205 IASYGTCQFPTLGFVVDRYKRVKSFKPEPFWYIEPMLRKESKRTTFNWVKGHIFDRLYVL 264
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
M+++ + ++ E+ + K S RP L TV L K + + ++ AE+LY
Sbjct: 265 LMYERCLKHEQ-GEITKLETKPTSNYRPLPLTTVELQKDCAKYFKMSAKATLEAAEKLYN 323
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ YP + DF+G + WG Y LL+ G+ +PR+G+ D HP
Sbjct: 324 RGFISYPRTETDKYPPTMDFKGIFEKQKQDSRWGSYSGGLLSNGHEQPRNGSHDDHAHPA 383
Query: 187 ITPMRSATEDMLGK-DAWRLYSYVCQHFLGTVSPDCK 222
I P+ + D LG + ++Y YV + FL S D K
Sbjct: 384 IHPVNYVSIDSLGSANEKKVYEYVVRRFLACCSKDAK 420
>gi|397476897|ref|XP_003809827.1| PREDICTED: DNA topoisomerase 3-alpha isoform 2 [Pan paniscus]
Length = 906
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 134 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHRDGIVEFNWKRH 193
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D I V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 194 RLFNHTACLVLYQLCMEDPIATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 253
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 254 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 313
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 314 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 355
>gi|327353792|gb|EGE82649.1| DNA topoisomerase [Ajellomyces dermatitidis ATCC 18188]
Length = 757
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 112/215 (52%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY ++ +F PE FW++ + G + W R+ LFD A
Sbjct: 216 LISYGSCQFPTLGFIVERYWRVRNFIPEPFWSIKLMHRKAGTRVNFSWARKHLFDRRTAV 275
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + SK +P L T+ L K S G Q +QLAE+LY +
Sbjct: 276 ILYERCLTSQNAQVQKVKTTPTSKWKPLPLTTLELQKCGSRFFGMDSQKVLQLAEKLYQK 335
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
G+ISYPRTE+ + D RG + A W DY L+ G++ PR+G D HPPI
Sbjct: 336 GWISYPRTETDQFDRGMDLRGLVQKQAQGGRWADYATALVEGGFSWPRNGHNDDKAHPPI 395
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ L + R++ +V +HFL S D +
Sbjct: 396 HPVNFVNPTTLSHEEQRVHEFVVRHFLACCSKDAQ 430
>gi|440475801|gb|ELQ44463.1| DNA topoisomerase 3 [Magnaporthe oryzae Y34]
gi|440487000|gb|ELQ66814.1| DNA topoisomerase 3 [Magnaporthe oryzae P131]
Length = 710
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 4/219 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L+L YG CQ PTLGF V RY ++ +F PE FW++ + ++G W R +LFD
Sbjct: 206 LVLSYGSCQFPTLGFVVDRYFRVKNFVPETFWSIKLSIKKDGKTGNFTWTRGRLFDRASV 265
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + ++ + VI + EK K +P L TV L K+A+ + Q M++AE+LY
Sbjct: 266 VILYERCIEAKTATVIKVQEKPTRKWKPLPLTTVELQKMATKFIRISGQQTMEIAEKLYQ 325
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ + + R + + WG + + L+ G+ +PR+G D HPP
Sbjct: 326 KGFISYPRTETDRFDKGMNLRTLVQKQTQDGRWGPFAQGLVDGGFQQPRNGRHDDKAHPP 385
Query: 187 ITPMRSATEDML---GKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ AT L G +A R+Y + + FL S D +
Sbjct: 386 IHPITYATGAALSEIGAEAGRVYELIVRRFLACCSEDAQ 424
>gi|328871269|gb|EGG19640.1| DNA topoisomerase III [Dictyostelium fasciculatum]
Length = 812
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 14/215 (6%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
+ YGPCQ PTLGF V+RYL+I +F PE FW+++ + + W+R++LFD A +
Sbjct: 237 ISYGPCQFPTLGFVVERYLRIENFIPEDFWSMNVKHSKEELTVNFGWKRKRLFDHAPAFI 296
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ + + + VIDI +K +K L K ASS L M++AE LY +G
Sbjct: 297 LYEKCLDNPLATVIDIQKKNHNK----------LQKSASSKLRISSDRTMKIAEELYNKG 346
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPIT 188
FISYPRTE++ + DF+G + +P WG Y RLL + +P G T+ HPPI
Sbjct: 347 FISYPRTETSQFIDGTDFQGLIGLQTGDPQWGQYATRLLNGEFKRPNDGRTNDHSHPPIH 406
Query: 189 PMRSATEDMLG-KD--AWRLYSYVCQHFLGTVSPD 220
P G KD A LY ++ +HFL SP+
Sbjct: 407 PTNFLPPGAAGAKDPKARELYEFIVRHFLACCSPE 441
>gi|74186931|dbj|BAE20515.1| unnamed protein product [Mus musculus]
Length = 954
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 119/215 (55%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F + ++ W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHKDGTVEFNWKRYRLFNHTACL 297
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +L M+D + V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 298 VLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQ 357
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P + + +P WG + + +L G PR+G+ + HPPI
Sbjct: 358 GYISYPRTETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRNGSKSDQAHPPI 417
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + + L D RLY ++ +HFL S D +
Sbjct: 418 HPTKYTS--GLQGDDRRLYEFIVRHFLACCSQDAQ 450
>gi|395517927|ref|XP_003763121.1| PREDICTED: DNA topoisomerase 3-alpha, partial [Sarcophilus
harrisii]
Length = 888
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 10/225 (4%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEW 56
+F V+ LI YG CQ PTLGF V+R+ I +F PE F H V + +E + W
Sbjct: 124 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPETF---HKIKVTHEHEDGVVDFSW 180
Query: 57 ERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQ 116
+R +LF+ + ++ M+D + V++++ K +SK RP L+TV L K+AS L +
Sbjct: 181 KRHRLFNHTACLVLYQMCMEDPVATVVEVASKPKSKWRPQPLDTVELEKLASRKLKINAK 240
Query: 117 MAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
M++AE+LYTQG+ISYPRTE+ +P + + ++ WG + +R+L G PR
Sbjct: 241 ETMKIAEKLYTQGYISYPRTETNIFPKDLNLTTLVQQQTHDQQWGAFAQRILDRGGPTPR 300
Query: 177 SGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+G + HPPI P + T ++ G + RLY ++ +HFL S D
Sbjct: 301 NGKKSDQAHPPIHPTK-YTCNLQGNEK-RLYEFIVRHFLACCSED 343
>gi|339245545|ref|XP_003378698.1| DNA topoisomerase 3-alpha [Trichinella spiralis]
gi|316972379|gb|EFV56057.1| DNA topoisomerase 3-alpha [Trichinella spiralis]
Length = 870
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 7/216 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLG V RY Q +F E FW L V ++ W R +LFD
Sbjct: 206 LISYGSCQFPTLGLVVDRYKQNQAFICETFWKL----VAKHETVEFHWRRGRLFDRHACA 261
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+L ++ + V + ++ ++ RP L+TV L K+A LG + AM +AE+LYTQ
Sbjct: 262 TLLQLCLESPVAVVRAVRSRKRTRKRPVALDTVGLEKMACKRLGMTAKEAMAVAEKLYTQ 321
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P D + N+ WG + R+L++G +PR G + HPPI
Sbjct: 322 GYISYPRTETNFFPKEIDLVSLVKQHVNDSQWGTFANRVLSQG-VQPRQGNKTDNAHPPI 380
Query: 188 TPMRSAT-EDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+R E + RLY +V +HFL +S D +
Sbjct: 381 HPIRHVDLEQFQHQQHRRLYEFVVRHFLACISADAQ 416
>gi|348511454|ref|XP_003443259.1| PREDICTED: DNA topoisomerase 3-alpha [Oreochromis niloticus]
Length = 1054
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 123/219 (56%), Gaps = 4/219 (1%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
++ ++ YG CQ PTLGF V+R+ I +F PE F+ + + W+R +LF+
Sbjct: 250 SLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVIHEVEEDCVDFNWKRNRLFN 309
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ ++ M+D I V ++ K +SK RP L+TV L K+AS L + M++AE
Sbjct: 310 HTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVELEKLASRKLRISAKETMKIAE 369
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAKPRSGTDAG 182
+LYTQGFISYPRTE+ +P + + ++PVWG + +R+L + G PR G ++
Sbjct: 370 KLYTQGFISYPRTETNIFPPNLALTPLVEQQTHSPVWGAFAQRVLDQPGGPNPRQGKNSD 429
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + + L + R+Y ++ +HFL VS D
Sbjct: 430 QAHPPIHPTKFT--NALQGNEGRVYEFIVRHFLACVSQD 466
>gi|332019151|gb|EGI59663.1| DNA topoisomerase 3-alpha [Acromyrmex echinatior]
Length = 1005
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 121/214 (56%), Gaps = 4/214 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L++ YG CQ PTLGF V+R+L I FK E +W L + ++ W R +LF+
Sbjct: 155 LLISYGSCQFPTLGFVVERFLAIDRFKSEPYWKLKVMDDREEISVEFRWARVRLFEKMPC 214
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + ++ V ++ K +SK RP L+T+ L K S L + M++AERLYT
Sbjct: 215 QIFLDMCLEQPEATVEKVTCKPKSKWRPLPLDTIELEKQGSRKLRINAKETMRIAERLYT 274
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
QGFISYPRTE+ +P + R + NN WG++ + LL G PR G + HPP
Sbjct: 275 QGFISYPRTETNIFPKELNLRSLVEQQVNNQEWGNFAQNLLESGIT-PRQGKKSDQAHPP 333
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
I P++ T+++ G +A ++Y +V +HFL +S +
Sbjct: 334 IHPIK-YTDNLYGNEA-KVYEFVVRHFLACLSKN 365
>gi|212527998|ref|XP_002144156.1| DNA topoisomerase III, putative [Talaromyces marneffei ATCC 18224]
gi|210073554|gb|EEA27641.1| DNA topoisomerase III, putative [Talaromyces marneffei ATCC 18224]
Length = 662
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 112/212 (52%), Gaps = 1/212 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YG CQ PTLGF V RYL++ +FKPE FW + ++ + W R +LFD T+
Sbjct: 213 YGSCQFPTLGFVVDRYLRVQNFKPEPFWAIAVIHKRDDINVNFNWRRVRLFDRAAVTVML 272
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ + + +V +++K SK RP L TV+L + S L MQ+AE LYT+GFI
Sbjct: 273 ERCLDAKNAKVTKVTKKPTSKWRPLPLTTVDLQMMGSKYLRMTSHQVMQIAETLYTRGFI 332
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPITPM 190
SYPRTE+ + + D + + + WG Y + LL + PR+G + HPPI P+
Sbjct: 333 SYPRTETDQFDKAIDLKKLIEKQVPDRTWGQYAQGLLDGNFRTPRAGKNNDQAHPPIHPI 392
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ L + R++ +V + FL S D K
Sbjct: 393 CAVGSSALKDEEKRVFDFVVRRFLACCSEDAK 424
>gi|338711250|ref|XP_001918241.2| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Equus caballus]
Length = 987
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 209 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHKIKVTHDHKDGIVEFGWKRH 268
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 269 RLFNHTACLVLYQLCMEDPRATVVEVRSKAKSKWRPQALDTVELEKLASRKLRINAKETM 328
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 329 RIAEKLYTQGYISYPRTETNIFPRDLNLTALVEQQTPDPRWGAFAQSILERGGPTPRNGN 388
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 389 KSDQAHPPIHPTKYTSN--LQGDEQRLYEFIVRHFLACCSQDAQ 430
>gi|26325928|dbj|BAC26718.1| unnamed protein product [Mus musculus]
Length = 839
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 114 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHKDGTVEFNWKRY 173
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 174 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 233
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G+
Sbjct: 234 RIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRNGS 293
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 294 KSDQAHPPIHPTKYTS--GLQGDDRRLYEFIVRHFLACCSQDAQ 335
>gi|328710041|ref|XP_001950527.2| PREDICTED: DNA topoisomerase 3-alpha-like [Acyrthosiphon pisum]
Length = 915
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 122/222 (54%), Gaps = 5/222 (2%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+RY I +F PE FW + + +++ W+R
Sbjct: 229 VFPEVLAKSLISYGSCQFPTLGFVVERYKDIQNFIPENFWKIKVHHKIENLDVEFSWQRV 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LFD + + + ++ V+ +++K +SK RP L+T+ L K AS LG + M
Sbjct: 289 RLFDEVLCNILYERCQENPTALVLKVTKKPKSKWRPVPLDTIELEKAASRKLGINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LY+QGFISYPRTE+ +P + + + WGD+ + +L G PR G
Sbjct: 349 KIAEKLYSQGFISYPRTETNIFPKELNLSNLVQLHVQDNNWGDFAQSVLING-PTPRQGK 407
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ HPPI P + + L ++Y YV +HFL +S D
Sbjct: 408 KSDQAHPPIHPTKYT--NGLQDRERKVYEYVVRHFLACLSKD 447
>gi|6678403|ref|NP_033436.1| DNA topoisomerase 3-alpha [Mus musculus]
gi|6686029|sp|O70157.1|TOP3A_MOUSE RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|3061308|dbj|BAA25662.1| topoisomerase III [Mus musculus]
gi|71043442|gb|AAH99689.1| Topoisomerase (DNA) III alpha [Mus musculus]
Length = 1003
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHKDGTVEFNWKRY 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G+
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRNGS 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + T + G D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTK-YTSGLQGDDR-RLYEFIVRHFLACCSQDAQ 450
>gi|242785292|ref|XP_002480564.1| DNA topoisomerase III, putative [Talaromyces stipitatus ATCC 10500]
gi|218720711|gb|EED20130.1| DNA topoisomerase III, putative [Talaromyces stipitatus ATCC 10500]
Length = 660
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 112/212 (52%), Gaps = 1/212 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YG CQ PTLGF V RYL++ +FKPE FW + ++ + W R +LFD T+
Sbjct: 213 YGSCQFPTLGFVVDRYLRVQNFKPEPFWAIAVVHKRDDINVNFNWRRVRLFDRAAVTVML 272
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ + + +V +++K SK RP L TV+L + S L MQ+AE LYT+GFI
Sbjct: 273 ERCLDAKDAKVTKVTKKPTSKWRPLPLTTVDLQMMGSKYLRMTSHQVMQIAETLYTRGFI 332
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPITPM 190
SYPRTE+ + + D + + + WG Y + LL + PR+G + HPPI P+
Sbjct: 333 SYPRTETDQFDKAIDLKKLIEKQVPDRTWGQYAQGLLDGNFRTPRAGKNNDQAHPPIHPI 392
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ L + R++ +V + FL S D K
Sbjct: 393 CAVAPSALKDEEKRVFDFVVRRFLACCSDDAK 424
>gi|332261726|ref|XP_003279918.1| PREDICTED: DNA topoisomerase 3-alpha isoform 1 [Nomascus
leucogenys]
Length = 1001
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|355568310|gb|EHH24591.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|402898997|ref|XP_003912493.1| PREDICTED: DNA topoisomerase 3-alpha [Papio anubis]
Length = 998
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|383412619|gb|AFH29523.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|380789899|gb|AFE66825.1| DNA topoisomerase 3-alpha [Macaca mulatta]
gi|380789901|gb|AFE66826.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|332261728|ref|XP_003279919.1| PREDICTED: DNA topoisomerase 3-alpha isoform 2 [Nomascus
leucogenys]
Length = 906
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 4/222 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 134 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 193
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 194 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 253
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 254 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 313
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ HPPI P + + L D RLY ++ +HFL S D
Sbjct: 314 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQD 353
>gi|398398505|ref|XP_003852710.1| DNA topoisomerase 3 [Zymoseptoria tritici IPO323]
gi|339472591|gb|EGP87686.1| hypothetical protein MYCGRDRAFT_71866 [Zymoseptoria tritici IPO323]
Length = 636
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 113/215 (52%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY ++ +F PE FW + ++ ++ W R LFD V T
Sbjct: 212 VISYGSCQFPTLGFVVERYFRVKNFLPETFWGIKVMHEKDRVKVNFHWSRGHLFDRMVVT 271
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + R V +++K SK +P L TV L K S L Q MQ+AE+LY
Sbjct: 272 ILFERCLTARTARVTKVTKKPTSKWKPLPLTTVELQKCGSRFLRMNSQRVMQIAEKLYQD 331
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ + + D + +P WG++ + L G++ PR G + HPPI
Sbjct: 332 GFISYPRTETDQFDRNTDLNTIIDKQIQSPDWGNFAQGLRNGGFSWPRMGRNNDKAHPPI 391
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ + L + R+Y ++ + FL S D +
Sbjct: 392 HPVNFVANNALDHEHRRVYEFIVRRFLACCSKDAQ 426
>gi|170596371|ref|XP_001902741.1| DNA topoisomerase III [Brugia malayi]
gi|158589402|gb|EDP28410.1| DNA topoisomerase III, putative [Brugia malayi]
Length = 718
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 118/215 (54%), Gaps = 2/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YG CQ PTLGF V+RY I F E FW + +++ ++ W+RQ+LFD ++
Sbjct: 154 IVSYGSCQFPTLGFIVERYKAIKEFISETFWKISMKHMRDDILVEFFWDRQRLFDHNIVQ 213
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + V+ + K +SK RP L+TV L K+A L + + M +AERLY +
Sbjct: 214 VLLDDCEEAGEARVLSVITKPKSKWRPVALDTVELEKLAVRKLKFSAKETMVVAERLYNK 273
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P + + + WGD+ + + G PR+G+ + HPPI
Sbjct: 274 GYISYPRTETNKFPKDMNLNIYVQQQTVSGEWGDFAQEIAVRG-PNPRNGSKTDEAHPPI 332
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ AT + L W LY ++ +HFL +S D K
Sbjct: 333 HPLKFATANELIGLEWSLYEFIVRHFLACLSVDAK 367
>gi|239608834|gb|EEQ85821.1| DNA topoisomerase III [Ajellomyces dermatitidis ER-3]
Length = 632
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 112/213 (52%), Gaps = 1/213 (0%)
Query: 11 IYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMF 70
+ G CQ PTLGF V RY ++ +FKPEKFW++ ++G + W R LFD +
Sbjct: 213 VSGSCQFPTLGFVVDRYFRVKNFKPEKFWSIKVSHARDGKTVNFLWRRVHLFDRAAVVVL 272
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ + + +V +++K K RP L TV+L + S L Q M++AE LYT+GF
Sbjct: 273 FERCLTSKTAKVTKVNKKPTRKWRPLPLTTVDLQMMGSRYLRMDSQKVMKIAEALYTKGF 332
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITP 189
ISYPRTE+ + D + + + WG Y +RL+ + +PR+G + HPPI P
Sbjct: 333 ISYPRTETDQFDKGIDLKKLVEKQIPSENWGQYAQRLMNGAFTQPRAGRHNDKAHPPIHP 392
Query: 190 MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ A L D +Y +V + FL S D K
Sbjct: 393 VIFAAPSALNADERAVYEFVTRRFLACCSEDAK 425
>gi|74140438|dbj|BAE42369.1| unnamed protein product [Mus musculus]
gi|74213102|dbj|BAE41691.1| unnamed protein product [Mus musculus]
Length = 773
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 3/211 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F + ++ W+R +LF+
Sbjct: 213 LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHKDGTVEFNWKRYRLFNHTACL 272
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +L M+D + V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 273 VLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQ 332
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P + + +P WG + + +L G PR+G+ + HPPI
Sbjct: 333 GYISYPRTETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRNGSKSDQAHPPI 392
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
P + + L D RLY ++ +HFL S
Sbjct: 393 HPTKYTSS--LQGDDRRLYEFIVRHFLACCS 421
>gi|238578791|ref|XP_002388836.1| hypothetical protein MPER_12103 [Moniliophthora perniciosa FA553]
gi|215450488|gb|EEB89766.1| hypothetical protein MPER_12103 [Moniliophthora perniciosa FA553]
Length = 421
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 4/213 (1%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKLEWERQKLFDFDVATMF 70
YGPCQ P LGF V R+ + +F+P+ FW ++ + E W+R ++F D A +
Sbjct: 204 YGPCQFPCLGFVVARFKDVQNFRPDPFWYIYLAVTTADDQETPFNWKRDRIFSEDEALVI 263
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ VM + + VI + +K+ K +P L TV + K S L P+ + +AE+LY QGF
Sbjct: 264 YEHVMTNPLARVIKVEKKETKKWKPLPLTTVEMQKAGSRLLKLAPKKILDIAEKLYQQGF 323
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPITP 189
+SYPRTE+ + S FDF+ + +P WG + L G++ PR G + HPPI P
Sbjct: 324 LSYPRTETDQFDSQFDFQSLIEKQRADPSWGAFATSLQEGGFSAPRKGKNNDKAHPPIHP 383
Query: 190 MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+A L + R+Y Y+ + FL S D K
Sbjct: 384 --TAYAGNLHGEEKRVYEYITRRFLACCSTDAK 414
>gi|301775497|ref|XP_002923167.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Ailuropoda melanoleuca]
Length = 959
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHKIKVTHDHKDGVVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPRATVVEVRSKAKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPKDLNLTVLVEQQTQDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYTGS--LQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|296416297|ref|XP_002837817.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633700|emb|CAZ82008.1| unnamed protein product [Tuber melanosporum]
Length = 616
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 121/216 (56%), Gaps = 3/216 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
++ YG CQ PTLGF V RY ++ +F PE FW++ ++ + W+R LFD V
Sbjct: 207 VVSYGSCQFPTLGFVVDRYKRVKNFVPEPFWSIRVIHKRDDINVGFSWDRGSLFDRMAVM 266
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
M++K + ++ +V+ + +K SK +P L TV L K S LG Q+ M +AE+LYT
Sbjct: 267 VMYEK-CLAAKVAKVVSVVKKPTSKWKPLPLTTVELQKQGSRFLGLSSQLVMNIAEKLYT 325
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
QGFISYPRTE+ + D R + + WG + + L+ G+++P++GT + HPP
Sbjct: 326 QGFISYPRTETDQFDRGMDLRALVGKQTQSHAWGQFAQGLMEGGFSQPKNGTHNDKAHPP 385
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ D L D R+Y +V + FL S D +
Sbjct: 386 IHPVAYVAPDKLNADEKRVYEFVVRRFLACCSKDAR 421
>gi|114668853|ref|XP_511323.2| PREDICTED: DNA topoisomerase 3-alpha isoform 3 [Pan troglodytes]
gi|410209052|gb|JAA01745.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410209054|gb|JAA01746.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410209056|gb|JAA01747.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258364|gb|JAA17149.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258366|gb|JAA17150.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258368|gb|JAA17151.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258370|gb|JAA17152.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410293004|gb|JAA25102.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410293006|gb|JAA25103.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410341687|gb|JAA39790.1| topoisomerase (DNA) III alpha [Pan troglodytes]
Length = 1001
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHRDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|154278056|ref|XP_001539853.1| DNA topoisomerase III [Ajellomyces capsulatus NAm1]
gi|150413438|gb|EDN08821.1| DNA topoisomerase III [Ajellomyces capsulatus NAm1]
Length = 632
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 1/211 (0%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G CQ PTLGF V RY ++ +FKPEKFWT+ V++G + W R L+D + +
Sbjct: 215 GSCQFPTLGFVVDRYFRVKNFKPEKFWTIKVSHVRDGKTVNFLWRRVHLYDRAAVVILFE 274
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ + +V + +K K RP L TV+L + S L Q M++AE LYT+GFIS
Sbjct: 275 RCLTSKTAKVTKMHKKPTRKWRPLPLTTVDLQMMGSRYLRMDSQKVMKIAETLYTKGFIS 334
Query: 133 YPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPITPMR 191
YPRTE+ + D + + + WG Y +RL+ + +PR+G + HPPI P+
Sbjct: 335 YPRTETDQFDKGIDLKKLIEKQIPSENWGQYAQRLINGSFTQPRAGHHNDKAHPPIHPVI 394
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
A +L D +Y +V + FL S D K
Sbjct: 395 FAAPTVLSNDERLVYEFVTRRFLACCSEDAK 425
>gi|224083488|ref|XP_002307047.1| predicted protein [Populus trichocarpa]
gi|222856496|gb|EEE94043.1| predicted protein [Populus trichocarpa]
Length = 910
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 119/218 (54%), Gaps = 6/218 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
L+L YGPCQ PTLGF V+RY +I S +PE+FWT++ + W R LFD+
Sbjct: 208 NLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFWTINCTHRSDEGLASFNWMRGHLFDYTS 267
Query: 67 ATMFQKLVMQDRILEVIDISEKQES-KVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ + ++ +++ V + + +QE K P L+T+ L K AS + M++AE L
Sbjct: 268 SVILYEMCVEEPTATVSNRNHQQEKLKYPPYPLSTIELEKRASRYFRMSSEQTMKVAEDL 327
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-- 183
Y GFISYPRTE+ ++ S D + +PVWG Y +RLL G R+ ++ G
Sbjct: 328 YQAGFISYPRTETDSFSSRTDLHTIVQEHQEHPVWGSYAQRLLDPGAGLWRNPSNGGHDD 387
Query: 184 --HPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + SA E +D RLY V +HFL VS
Sbjct: 388 KAHPPIHPTKFSAGESRWSQDHHRLYELVVRHFLACVS 425
>gi|355753822|gb|EHH57787.1| DNA topoisomerase 3-alpha, partial [Macaca fascicularis]
Length = 839
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 67 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 126
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 127 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 186
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 187 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 246
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 247 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 288
>gi|410980097|ref|XP_003996416.1| PREDICTED: DNA topoisomerase 3-alpha [Felis catus]
Length = 987
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHKIKVTHDHKDGVVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPRATVVEVKSKAKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPKDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYTSS--LQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|410051780|ref|XP_003953166.1| PREDICTED: DNA topoisomerase 3-alpha [Pan troglodytes]
Length = 906
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 134 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHRDGIVEFNWKRH 193
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 194 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 253
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 254 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 313
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 314 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 355
>gi|432871570|ref|XP_004071982.1| PREDICTED: DNA topoisomerase 3-alpha-like [Oryzias latipes]
Length = 987
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 124/219 (56%), Gaps = 4/219 (1%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
++ ++ YG CQ PTLGF V+R+ I +F PE F+ + ++ W+R +LF+
Sbjct: 251 SLANQLVSYGSCQFPTLGFVVERFKAIKAFIPETFYKIKVLHTLEDDTVEFSWKRNRLFN 310
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ ++ M+D I V ++ K +SK RP L+TV L K+AS L + M++AE
Sbjct: 311 HTCCLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVELEKLASRKLRINAKETMKIAE 370
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAKPRSGTDAG 182
+LYTQGFISYPRTE+ +P++ + ++ WG + +R+L + G PR G +
Sbjct: 371 KLYTQGFISYPRTETNIFPANLVLAPLVEQQTHSSTWGTFAQRVLDQPGGPNPRQGKKSD 430
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + T + G +A R+Y ++ +HFL VS D
Sbjct: 431 QAHPPIHPTK-YTSSLQGNEA-RVYEFIVRHFLACVSQD 467
>gi|403275443|ref|XP_003929454.1| PREDICTED: DNA topoisomerase 3-alpha [Saimiri boliviensis
boliviensis]
Length = 923
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 450
>gi|261203873|ref|XP_002629150.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
gi|239586935|gb|EEQ69578.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
Length = 632
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 112/213 (52%), Gaps = 1/213 (0%)
Query: 11 IYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMF 70
+ G CQ PTLGF V RY ++ +FKPEKFW++ ++G + W R LFD +
Sbjct: 213 VSGSCQFPTLGFVVDRYFRVKNFKPEKFWSIKVSHARDGKTVNFLWRRVHLFDRAAVVVL 272
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ + + +V +++K K RP L TV+L + S L Q M++AE LYT+GF
Sbjct: 273 FERCLTSKTAKVTKVNKKPTRKWRPLPLTTVDLQMMGSRYLRMDSQKVMKIAEALYTKGF 332
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITP 189
ISYPRTE+ + D + + + WG Y +RL+ + +PR+G + HPPI P
Sbjct: 333 ISYPRTETDQFDKGIDLKKLVEKQIPSENWGQYAQRLMNGAFIQPRAGRHNDKAHPPIHP 392
Query: 190 MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ A L D +Y +V + FL S D K
Sbjct: 393 VIFAAPSALNADERAVYEFVTRRFLACCSEDAK 425
>gi|255716548|ref|XP_002554555.1| KLTH0F08118p [Lachancea thermotolerans]
gi|238935938|emb|CAR24118.1| KLTH0F08118p [Lachancea thermotolerans CBS 6340]
Length = 627
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 118/221 (53%), Gaps = 7/221 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YG CQ PTLGF V R+ +I F PEKFW + + + + +WER LFD
Sbjct: 213 IISYGTCQFPTLGFVVDRFERIRKFVPEKFWFIQISIPNDSEKTVFQWERGHLFDRLAVA 272
Query: 69 MFQKLVMQ--DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ +L ++ I +V D+ K +K RP L TV L K S L + ++ AE+LY
Sbjct: 273 VIYELCLEASGNIAKVADLKSKPTTKWRPLPLTTVELQKNCSRFLKMSAKTSLDAAEKLY 332
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG----YAKPRSG-TDA 181
+G+ISYPRTE+ +P + D + + N+ WG+Y + LL + PR+G D
Sbjct: 333 QKGYISYPRTETDIFPPNMDLQALVQQQTNDRRWGEYAQNLLNGNGPNCFKWPRAGKNDD 392
Query: 182 GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ S E + ++ ++Y YV +HFL S D K
Sbjct: 393 KAHPPIHPIVSCGEGLDNENEKKVYEYVTRHFLACCSEDSK 433
>gi|410902017|ref|XP_003964491.1| PREDICTED: DNA topoisomerase 3-alpha-like [Takifugu rubripes]
Length = 967
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 122/219 (55%), Gaps = 4/219 (1%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
++ ++ YG CQ PTLGF V+R+ I SF PE F+ + ++ W+R +LF+
Sbjct: 208 SLANQLISYGSCQFPTLGFVVERFKAIQSFIPETFYKIKVLHEVEEDTVEFSWKRNRLFN 267
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ ++ M+D I V ++ K +SK RP L+TV + K+AS L + M++AE
Sbjct: 268 HTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVEMEKLASRKLRISAKETMKIAE 327
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAKPRSGTDAG 182
+LYT+GFISYPRTE+ +P + + + VWG + +R+L + G PR G +
Sbjct: 328 KLYTRGFISYPRTETNIFPPNLALGPLVEEQTQSSVWGAFAQRVLEQPGGPNPRQGKKSD 387
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + ++ L + RLY ++ +HFL VS D
Sbjct: 388 QAHPPIHPTKHSSS--LQGNEGRLYEFIVRHFLACVSQD 424
>gi|170039894|ref|XP_001847754.1| DNA topoisomerase 3-alpha [Culex quinquefasciatus]
gi|167863475|gb|EDS26858.1| DNA topoisomerase 3-alpha [Culex quinquefasciatus]
Length = 992
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 115/217 (52%), Gaps = 4/217 (1%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF QRY +I +F P+ FW + ++ W R +LFD
Sbjct: 201 ISNSLVSYGSCQIPTLGFVAQRYKEIENFIPQAFWKIKLNHTIGELTVEFNWSRNRLFDK 260
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ L +++ +++ ++ K +SK RP L+TV L K+ S L + M +AE+
Sbjct: 261 QCCEAYLMLCQSEQMAKIVSVTNKPKSKWRPTPLDTVELEKLGSRKLKLNAKTTMTIAEK 320
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD- 183
LYTQG ISYPRTE+ + + A +P WGD+ ++++ G PR+G +
Sbjct: 321 LYTQGIISYPRTETNMFTHDMKLAPLVEMQAGHPEWGDFAQKVMQWG-PNPRNGKKSDQA 379
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + T L D R+Y V +HFL VS D
Sbjct: 380 HPPIHPTKFVTN--LSGDEKRVYELVVRHFLACVSKD 414
>gi|430813900|emb|CCJ28786.1| unnamed protein product [Pneumocystis jirovecii]
Length = 597
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 124/217 (57%), Gaps = 7/217 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
I+ YG CQ PTLGF V R+ +I +F PEKFW++ Y + Y+ W+R +LFD V
Sbjct: 219 IVSYGSCQFPTLGFVVDRWKRIENFVPEKFWSIKIYF--HNYQTSFNWKRIRLFDRLSVF 276
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+++ ++ D++ +V ++ +K + + +P L TV L K LG + M++AE LYT
Sbjct: 277 LIYENCLLFDKV-KVKNVLQKPKRR-KPYPLTTVELQKQGVKYLGLSSKDIMKIAETLYT 334
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPP 186
+GFISYPRTE+ + D + N+ WG Y + LL ++ PR G D HPP
Sbjct: 335 KGFISYPRTETDQFSDDIDLHSLIRKQINDEQWGSYAQSLLNGKFSHPRKGKNDDKAHPP 394
Query: 187 ITPMRSATEDMLGK-DAWRLYSYVCQHFLGTVSPDCK 222
I P+ ++ L D +++YS++ +HFL + S + +
Sbjct: 395 IHPIAYVKKNTLRSVDEYKVYSFIVRHFLASCSQNAQ 431
>gi|358368744|dbj|GAA85360.1| DNA topoisomerase III [Aspergillus kawachii IFO 4308]
Length = 629
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 1/221 (0%)
Query: 3 VAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLF 62
A+ I+ YG CQ PTLGF V RYL++ +FKPE FW + ++ ++ W+R LF
Sbjct: 204 AALQDTIISYGSCQFPTLGFVVDRYLRVKNFKPETFWGIKVMHTRDDIKVNFLWKRVHLF 263
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D T+ + + + +V +++K SK RP L TV+L + S L Q M++A
Sbjct: 264 DRAAVTVMLERCLMAKKAKVTKVTQKPTSKWRPLPLTTVDLQMMGSRYLRMDSQTIMKVA 323
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
E LYT+GFISYPRTE+ + D + + + WG Y LL + PRSG
Sbjct: 324 EALYTKGFISYPRTETDQFDKGIDLKKLVEKQLPDGNWGQYARHLLDGAFKTPRSGRHND 383
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ L D ++Y +V + FL S D K
Sbjct: 384 QAHPPIHPICWVAPTALTADEKKVYEFVVRRFLACCSEDAK 424
>gi|391328844|ref|XP_003738893.1| PREDICTED: DNA topoisomerase 3-alpha [Metaseiulus occidentalis]
Length = 689
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 126/223 (56%), Gaps = 3/223 (1%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKL 61
F A + +L YG CQ PTLGF V+RY +I F+ E+F+ + V++ + W+R +L
Sbjct: 200 FSATRSNVLSYGSCQFPTLGFVVERYKEIDEFRAERFYKIEVKHVKDELYGEFIWKRGRL 259
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
FD + + + +++ +++ I K ++K RP ++TV+L K+AS L + A+
Sbjct: 260 FDHSITLILYERLLERPHMKISTIEAKSKAKFRPQPMDTVSLEKLASRKLRMTAKEALAH 319
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAKPRSGTD 180
AE+LYT+G ISYPRTE+ +P + A +P WGD+ R++ E G PR+G
Sbjct: 320 AEKLYTEGLISYPRTETNKFPPEIQLLPLVEAQCQSPQWGDFATRIVNEWGGPHPRNGNK 379
Query: 181 AGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + A + L + ++Y V +HFL VS D +
Sbjct: 380 SDQAHPPIHPTKYAQLN-LQDNKGKVYELVVRHFLACVSQDAR 421
>gi|350635779|gb|EHA24140.1| hypothetical protein ASPNIDRAFT_48367 [Aspergillus niger ATCC 1015]
Length = 629
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 1/221 (0%)
Query: 3 VAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLF 62
A+ I+ YG CQ PTLGF V RYL++ +FKPE FW + ++ ++ W+R LF
Sbjct: 204 AALQDTIISYGSCQFPTLGFVVDRYLRVKNFKPETFWGIKVMHTRDDIKVNFLWKRVHLF 263
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D T+ + + + +V +++K SK RP L TV+L + S L Q M++A
Sbjct: 264 DRAAVTVMLERCLMAKKAKVTKVTQKPTSKWRPLPLTTVDLQMMGSRYLRMDSQTIMKVA 323
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
E LYT+GFISYPRTE+ + D + + + WG Y LL + PRSG
Sbjct: 324 EALYTKGFISYPRTETDQFDKGIDLKKLVEKQLPDGNWGQYARHLLDGAFKTPRSGRHND 383
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ L D ++Y +V + FL S D K
Sbjct: 384 QAHPPIHPICWVAPTALTADEKKVYEFVVRRFLACCSEDAK 424
>gi|334332664|ref|XP_003341626.1| PREDICTED: DNA topoisomerase 3-alpha [Monodelphis domestica]
Length = 976
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 10/227 (4%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEW 56
+F V+ LI YG CQ PTLGF V+R+ I +F PE F H V + +E + W
Sbjct: 218 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPETF---HKIKVTHEHEDGLVDFSW 274
Query: 57 ERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQ 116
+R +LF+ + ++ M+D + V+++ K +S+ RP L+TV L K+AS L +
Sbjct: 275 KRHRLFNHTACLVLYQMCMEDPVATVVEVGSKPKSRWRPQPLDTVELEKLASRKLKINAK 334
Query: 117 MAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
M++AE+LYTQG+ISYPRTE+ +P + + ++ WG + +R+L G PR
Sbjct: 335 ETMKIAEKLYTQGYISYPRTETNIFPKDLNLTALVQQQIHDQQWGAFAQRILDRGGPTPR 394
Query: 177 SGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+G + HPPI P + L + RLY ++ +HFL S D +
Sbjct: 395 NGKKSDQAHPPIHPTKYTCN--LQGNEQRLYEFIVRHFLACCSEDAQ 439
>gi|302687094|ref|XP_003033227.1| hypothetical protein SCHCODRAFT_54192 [Schizophyllum commune H4-8]
gi|300106921|gb|EFI98324.1| hypothetical protein SCHCODRAFT_54192 [Schizophyllum commune H4-8]
Length = 611
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 119/218 (54%), Gaps = 6/218 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGY--ELKLEWERQKLFDFDV 66
++ YG CQ PTLGF V R+ Q+ SF PE F +H + G E W+R ++FD DV
Sbjct: 204 VISYGSCQFPTLGFVVNRFKQVKSFVPEDFSYIHLTIKAPGSNDETPFTWQRGRIFDRDV 263
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A +LVM+D + V + +K K +P L TV L K S L P+ + +AE+LY
Sbjct: 264 AVALYQLVMRDTLTTVTKVVKKTTKKWKPLPLTTVELQKAGSRLLRLAPKRVLDIAEKLY 323
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAKPRSGTDAGD-H 184
QGF+SYPRTE+ +P++ DF+ + + WG + +L + G+ +PR G + H
Sbjct: 324 QQGFVSYPRTETDQFPNNMDFKSLIEKQKADATWGAFATKLNDQGGFERPRKGKHNDNAH 383
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PPI P A + L D R+Y ++ + FL S D +
Sbjct: 384 PPIHPTAHAAQ--LAGDEKRVYEFIARRFLACCSKDAE 419
>gi|171686712|ref|XP_001908297.1| hypothetical protein [Podospora anserina S mat+]
gi|170943317|emb|CAP68970.1| unnamed protein product [Podospora anserina S mat+]
Length = 751
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 115/217 (52%), Gaps = 2/217 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L++ YG CQ PTLGF V RY ++ +F PE FW++ + G ++ W R +LFD
Sbjct: 291 LMISYGSCQFPTLGFVVDRYFRVKNFVPEAFWSIKLVHEREGMKVSFGWARNRLFDRAAV 350
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
T+ + ++ R V + EK K +P L TV L K+A+ L Q AM +AE+LY
Sbjct: 351 TILYERCLRAREAVVKKVQEKPTKKWKPLPLTTVELQKMATRFLRMTGQQAMTVAEKLYN 410
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSG-TDAGDHP 185
+GFISYPRTE+ + + RG + + WG + L+ G + +PR G D HP
Sbjct: 411 KGFISYPRTETDRFDKGMNLRGLVEKQFPDGRWGAFARELIEGGRFNQPRQGKNDDKAHP 470
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P+ A +L + ++Y V + FL S D K
Sbjct: 471 PIHPITCAAPTVLDEQERKVYELVVRRFLACCSDDAK 507
>gi|409075215|gb|EKM75598.1| hypothetical protein AGABI1DRAFT_46203 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 852
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 113/219 (51%), Gaps = 7/219 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL---HPYLVQNG-YELKLEWERQKLFDF 64
I+ YGPCQ PTLGF VQRY Q+ +F PE FW + H G E W+R LFD
Sbjct: 202 IVSYGPCQFPTLGFAVQRYNQVKNFIPEDFWYIFLSHTSDTPMGPRETVFSWKRGHLFDE 261
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V + + V++ + V + KQ K +P L TV L K S L P+ + +AE+
Sbjct: 262 AVVAVLYEHVLEFPNVRVAKVVNKQTKKWKPLPLTTVELQKAGSRLLKMAPKKVLDIAEK 321
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGD 183
LY QGF+SYPRTE+ + FDF + + WG++ + L G+ PR G D
Sbjct: 322 LYQQGFVSYPRTETDQFDPQFDFMSLIQKQKADTNWGNFAQSLEQGGFTSPRKGKHDDKA 381
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P +A L D R+Y Y+ + FL S D +
Sbjct: 382 HPPIHP--TAHAGNLTGDEKRVYEYIARRFLACCSKDAE 418
>gi|357464743|ref|XP_003602653.1| DNA topoisomerase [Medicago truncatula]
gi|355491701|gb|AES72904.1| DNA topoisomerase [Medicago truncatula]
Length = 587
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 115/215 (53%), Gaps = 5/215 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L YGPCQ PTLGF V+RY +I + +PE+FW + + WER LFD+ A
Sbjct: 215 VLSYGPCQFPTLGFVVERYWEIQAHEPEEFWLIKCSHRSDEGVANFSWERGHLFDYTCAV 274
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ ++ +++ V ++ K++ K P L+T+ L K AS + M++AE LY
Sbjct: 275 IIYEMCIEEPTATVTKVTPKEKPKYPPHPLSTIELEKRASRYFRMSSERTMKVAEELYQG 334
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKPR-SGTDAGDH 184
GFISYPRTE+ + S D + +P WG Y +RLL G + PR G D H
Sbjct: 335 GFISYPRTETDNFSSRTDLHAIVQEQQGHPEWGIYAQRLLDPGAGLWRNPRGGGHDDQAH 394
Query: 185 PPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
PPI P + SA E +D +LY V +HFL VS
Sbjct: 395 PPIHPTKFSAGESGWSQDHRKLYELVVRHFLACVS 429
>gi|393245510|gb|EJD53020.1| prokaryotic type I DNA topoisomerase [Auricularia delicata
TFB-10046 SS5]
Length = 613
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 115/219 (52%), Gaps = 7/219 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFW----TLHPYLVQNGYELKLEWERQKLFDF 64
++ YGPCQ PTLGF V RY Q+ +F+PE FW + P + E + +W R +F+F
Sbjct: 202 VISYGPCQFPTLGFVVSRYEQVQAFRPEPFWYIYLAISPNVDGEETETEFKWRRGHIFEF 261
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
VA ++V++D V + +K K +P L TV L K S L P+ + LAE
Sbjct: 262 QVALAIYEMVLEDPTARVSSVKKKSVKKWKPLPLTTVELQKAGSRLLRLAPKKVLDLAEG 321
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LY +GF+SYPRTE+ + FDF + +P WG + L G+A PR G D
Sbjct: 322 LYQKGFLSYPRTETDQFDPQFDFMSLIDKQKVDPAWGAFATSLQNGGFATPRRGKKDDKA 381
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P +A L D R+Y ++ + FL S D +
Sbjct: 382 HPPIHP--TAHAGNLAGDEKRVYEFITRRFLACCSKDAE 418
>gi|330804855|ref|XP_003290405.1| hypothetical protein DICPUDRAFT_37309 [Dictyostelium purpureum]
gi|325079456|gb|EGC33055.1| hypothetical protein DICPUDRAFT_37309 [Dictyostelium purpureum]
Length = 831
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 11/221 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPY----LVQNG----YELKLEWERQK 60
I+ YGPCQ PTLGF V+RY + T+F E FWT++ Y + N E+ W+R++
Sbjct: 213 IISYGPCQFPTLGFVVERYFRKTNFVREDFWTVNVYDNRRIETNNDDRPSEVVFSWKRKR 272
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
LFD+ A + + + + V+DI+ +SK RP L T+ L K AS L M
Sbjct: 273 LFDYSTAYILYEKCLDNPQAVVVDIN-TNDSKYRPLPLTTIELQKQASKKLRISSSDTMA 331
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTD 180
+AE LY +G ISYPRTE+ + DFRG + ++P WG Y +RL + PRSGT+
Sbjct: 332 IAEDLYNKGLISYPRTETDTFQQGTDFRGLIGIQGSHPQWGQYAQRLNNGEFKYPRSGTN 391
Query: 181 AGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ HPPI P +A L + ++Y ++ + FL S +
Sbjct: 392 NDNSHPPIHPT-AACPSTLPDRSKKVYEFITRRFLACCSTE 431
>gi|440636754|gb|ELR06673.1| hypothetical protein GMDG_00290 [Geomyces destructans 20631-21]
Length = 659
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 113/211 (53%), Gaps = 2/211 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YG CQ PTLGF V RYL++ +F PE FW++ ++ + W R +LFD T+
Sbjct: 212 YGSCQFPTLGFVVDRYLKVQNFVPEPFWSIKVTHTRDNIDATFHWNRNRLFDRAAVTILF 271
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ + ++++V + +K ++ +P L TV L K+AS L Q AM++AE LY +G I
Sbjct: 272 ERCLDAKVVKVTKVQQKPTNRWKPLPLTTVELQKMASRFLRMNSQTAMKVAEDLYNKGMI 331
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPITPM 190
SYPRTE+ + + + + + WG + + L+ G+ PR+G D HPPI P+
Sbjct: 332 SYPRTETDIFDKGMNLKSLVEKHTQDNRWGPFAQNLVNGGFHWPRAGRNDDKAHPPIHPI 391
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ D D RLY +V + FL S D
Sbjct: 392 AAYNADR-NSDEGRLYEFVVRRFLACCSEDA 421
>gi|145238250|ref|XP_001391772.1| DNA topoisomerase 3 [Aspergillus niger CBS 513.88]
gi|134076254|emb|CAK39540.1| unnamed protein product [Aspergillus niger]
Length = 629
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 1/221 (0%)
Query: 3 VAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLF 62
A+ I+ YG CQ PTLGF V RYL++ +FKPE FW + ++ ++ W+R LF
Sbjct: 204 AALQDTIISYGSCQFPTLGFVVDRYLRVKNFKPETFWGIKVMHTRDDIKVNFLWKRVHLF 263
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D T+ + + + +V +++K SK RP L TV+L + S L Q M++A
Sbjct: 264 DRVAVTVMLERCLMAKKAKVTKVTQKPTSKWRPLPLTTVDLQMMGSRYLRMDSQTIMKVA 323
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
E LYT+GFISYPRTE+ + D + + + WG Y LL + PRSG
Sbjct: 324 EALYTKGFISYPRTETDQFDKGIDLKKLVETQLPDGNWGQYARHLLDGAFKTPRSGRHND 383
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ L D ++Y +V + FL S D K
Sbjct: 384 QAHPPIHPICWVAPTALTADEKKVYEFVVRRFLACCSEDAK 424
>gi|10835218|ref|NP_004609.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|2501242|sp|Q13472.1|TOP3A_HUMAN RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|1292912|gb|AAB03694.1| DNA topoisomerase III [Homo sapiens]
gi|30353789|gb|AAH51748.1| Topoisomerase (DNA) III alpha [Homo sapiens]
gi|119576050|gb|EAW55646.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|119576052|gb|EAW55648.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|119576053|gb|EAW55649.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|158259313|dbj|BAF85615.1| unnamed protein product [Homo sapiens]
gi|311347058|gb|ADP90454.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347060|gb|ADP90455.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347062|gb|ADP90456.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347064|gb|ADP90457.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347066|gb|ADP90458.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347068|gb|ADP90459.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347070|gb|ADP90460.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347072|gb|ADP90461.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347074|gb|ADP90462.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347076|gb|ADP90463.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347078|gb|ADP90464.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347080|gb|ADP90465.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347082|gb|ADP90466.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347084|gb|ADP90467.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347086|gb|ADP90468.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347088|gb|ADP90469.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347090|gb|ADP90470.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347092|gb|ADP90471.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347094|gb|ADP90472.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347096|gb|ADP90473.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347098|gb|ADP90474.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347100|gb|ADP90475.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347102|gb|ADP90476.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347104|gb|ADP90477.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347106|gb|ADP90478.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347108|gb|ADP90479.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347110|gb|ADP90480.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347112|gb|ADP90481.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347114|gb|ADP90482.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347116|gb|ADP90483.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347118|gb|ADP90484.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347120|gb|ADP90485.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347122|gb|ADP90486.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347124|gb|ADP90487.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347126|gb|ADP90488.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347128|gb|ADP90489.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347130|gb|ADP90490.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347132|gb|ADP90491.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347134|gb|ADP90492.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347136|gb|ADP90493.1| DNA topoisomerase 3-alpha [Homo sapiens]
Length = 1001
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 124/224 (55%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L ++D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + T ++ G D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKY-TNNLQG-DEQRLYEFIVRHFLACCSQDAQ 450
>gi|1292913|gb|AAB03695.1| DNA topoisomerase III [Homo sapiens]
Length = 976
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 124/224 (55%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 204 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 263
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L ++D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 264 RLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 323
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 324 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 383
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + T ++ G D RLY ++ +HFL S D +
Sbjct: 384 KSDQAHPPIHPTK-YTNNLQG-DEQRLYEFIVRHFLACCSQDAQ 425
>gi|345305221|ref|XP_001510142.2| PREDICTED: DNA topoisomerase 3-alpha [Ornithorhynchus anatinus]
Length = 994
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 10/227 (4%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEW 56
+F V+ LI YG CQ PTLGF V+R+ I +F PE F H V + +E ++ W
Sbjct: 224 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPESF---HKIKVTHEHEDCLVEFNW 280
Query: 57 ERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQ 116
+R +LF+ + ++ +++ V+++ K +SK RP L+TV L K+AS L +
Sbjct: 281 KRHRLFNHTACLVLYQMCIEEPTATVVEVGSKPKSKWRPQPLDTVELEKLASRKLKINAK 340
Query: 117 MAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
M++AE+LYT G+ISYPRTE+ +P + + + WGD+ +R+L G PR
Sbjct: 341 ETMRIAEKLYTHGYISYPRTETNIFPKDLNLVALVQQQTQDQHWGDFAQRILDRGGPTPR 400
Query: 177 SGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+G + HPPI P + L D RLY ++ +HFL S D +
Sbjct: 401 NGNKSDQAHPPIHPTKYTCN--LQGDEQRLYEFIVRHFLACCSQDAQ 445
>gi|158299059|ref|XP_319175.3| AGAP010028-PA [Anopheles gambiae str. PEST]
gi|157014186|gb|EAA13910.3| AGAP010028-PA [Anopheles gambiae str. PEST]
Length = 1025
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 115/217 (52%), Gaps = 4/217 (1%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF QRY +I +F P+ FW + + ++ W R +LFD
Sbjct: 229 ISNNLVSYGSCQIPTLGFVAQRYKEIENFIPQTFWKIKLTHTIDDLTVEFHWSRNRLFDK 288
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ L + +V+++++K ++K RP ++TV L K+ S L + M +AE+
Sbjct: 289 QCCEAYLMLCQTNPTAKVVNVTQKPKNKWRPTPMDTVELEKLGSRKLKMNAKQVMTIAEK 348
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD- 183
LYTQG ISYPRTE+ + + A + WG + E++L G PR+G +
Sbjct: 349 LYTQGIISYPRTETNMFTGDMKLAPLVQAQVASDQWGSFAEKVLQWG-VNPRNGKKSDQA 407
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + T L D WR+Y + +HFL VS D
Sbjct: 408 HPPIHPTKLPTN--LSGDEWRVYELIARHFLACVSRD 442
>gi|156037882|ref|XP_001586668.1| hypothetical protein SS1G_12655 [Sclerotinia sclerotiorum 1980]
gi|154698063|gb|EDN97801.1| hypothetical protein SS1G_12655 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 670
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 109/215 (50%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L YG CQ PTLGF V RY ++ +F PE FW++ + + W+R +LFD V
Sbjct: 209 MLSYGSCQFPTLGFVVDRYFKVKNFVPEPFWSIKITHSREDMNVIFNWKRNRLFDRAVVI 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + ++ + EK K +P L TV L K AS L QMAM AE LY +
Sbjct: 269 ILFERCIAAKFGKITKVQEKPTKKWKPLPLTTVELQKAASRWLHMNSQMAMTAAESLYNK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
GFISYPRTE+ + + R + + WG + + L+ G+ PR G D HPPI
Sbjct: 329 GFISYPRTETDRFDKGMNLRALVEKQIQDNRWGQFAQNLINGGFRWPRDGRNDDKAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ L + R+Y +V + FL S D K
Sbjct: 389 HPVIYVAPTALKPEEARIYEFVVRRFLACCSEDAK 423
>gi|198413663|ref|XP_002126376.1| PREDICTED: similar to topoisomerase (DNA) III alpha, partial [Ciona
intestinalis]
Length = 571
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 11/223 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL---HPYLVQNG---YELKLEWERQKLF 62
++ YG CQ PTLGF V+RY F+PE FW + H N W+R +LF
Sbjct: 212 LISYGSCQFPTLGFVVERYKAREQFQPEDFWKIEVTHTTTQHNDDGPVTSTFSWKRNRLF 271
Query: 63 DFDVATMFQKLVMQDRILE-VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+ + M+ ++ V ++S + SK RP + TV L K+AS L + M++
Sbjct: 272 NELACRVLYANCMEPPVVATVTNVSSRPRSKWRPVAMETVELEKLASRKLRINAKETMKI 331
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA-EGYAKPRSGTD 180
AE LYTQG+ISYPRTE+ +P FD + N+P WG++ LLA EG +PR+G
Sbjct: 332 AETLYTQGYISYPRTETNIFPKDFDLERLVGEQTNHPAWGNFARDLLALEGGPQPRNGHK 391
Query: 181 AGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P ++A+ ++ G +A R+Y + +HFL D K
Sbjct: 392 SDQAHPPIHPTKAAS-NLSGNNA-RIYELIARHFLACCHRDAK 432
>gi|296201147|ref|XP_002747908.1| PREDICTED: DNA topoisomerase 3-alpha [Callithrix jacchus]
Length = 931
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V++ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLSEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFSWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L + RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKYT--NSLQGNEQRLYEFIVRHFLACCSQDAQ 450
>gi|380021980|ref|XP_003694833.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Apis florea]
Length = 1011
Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats.
Identities = 74/214 (34%), Positives = 117/214 (54%), Gaps = 4/214 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+++ YG CQ PTLGF V+R+L I FK E W + +++ ++ +W R KLF+
Sbjct: 205 MLISYGSCQFPTLGFVVERFLAIEEFKIEPCWKIKVMDIRDNISVEFKWARGKLFEKLPC 264
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + ++ V + K SK RP L+T+ L K L + M++AE+LYT
Sbjct: 265 EIFLDICLEQPNATVQKVLSKPTSKWRPLPLDTIELEKQGLRKLNLNAKETMRIAEKLYT 324
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
QG ISYPRTE+ +P + ++ NN WG++ ++LL +G PR G + HPP
Sbjct: 325 QGLISYPRTETNIFPKELNLISLVNQQVNNSAWGNFAQQLLEKG-VNPRKGKKSDQAHPP 383
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
I P++ D L + ++Y +V +HFL +S D
Sbjct: 384 IHPIKYC--DTLNGNEAKVYEFVVRHFLACLSSD 415
>gi|194383072|dbj|BAG59092.1| unnamed protein product [Homo sapiens]
Length = 906
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 123/222 (55%), Gaps = 4/222 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 134 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 193
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L ++D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 194 RLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 253
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 254 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 313
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ HPPI P + T ++ G D RLY ++ +HFL S D
Sbjct: 314 KSDQAHPPIHPTK-YTNNLQG-DEQRLYEFIVRHFLACCSQD 353
>gi|67536770|ref|XP_662159.1| hypothetical protein AN4555.2 [Aspergillus nidulans FGSC A4]
gi|40741708|gb|EAA60898.1| hypothetical protein AN4555.2 [Aspergillus nidulans FGSC A4]
gi|259482615|tpe|CBF77265.1| TPA: DNA topoisomerase III (Eurofung) [Aspergillus nidulans FGSC
A4]
Length = 629
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RYL++ FKPE FW + ++G ++ W R LFD T
Sbjct: 210 VISYGSCQFPTLGFVVDRYLRVKRFKPETFWGIKVMHTRDGIKVSFLWNRVHLFDRAAVT 269
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + EV +++K SK RP L TV+L + + L M++AE LYT+
Sbjct: 270 IMLERCLMATKAEVTKVNQKPTSKWRPLPLTTVDLQMMGTKYLRMDSAKVMKIAENLYTK 329
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ + D + + + WG+Y LL + PR+G HPPI
Sbjct: 330 GFISYPRTETDQFDKGIDLKKLIEKQLPDERWGEYARCLLGGNFRTPRAGRHNDQAHPPI 389
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ L +D ++Y +V + FL S D K
Sbjct: 390 HPVCWVNPTTLTEDERKVYEFVTRRFLACCSDDAK 424
>gi|357613303|gb|EHJ68426.1| prokaryotic DNA topoisomerase [Danaus plexippus]
Length = 734
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 117/217 (53%), Gaps = 4/217 (1%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
V I+ +G CQ PTLGF V+R+ I +F PEKFW L W+R K+FD
Sbjct: 203 VSNKIVSFGSCQFPTLGFVVERWRAIENFIPEKFWKLQVNHTLGNESTDFLWDRVKIFDK 262
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
D+ +F + ++++ V+++ K ++K RP L+TV L K AS L + M++AE+
Sbjct: 263 DICNIFYNMCLENKTATVVNVETKPKTKWRPLPLDTVELEKQASRLLKINAKTTMKIAEK 322
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD- 183
LYT G ISYPRTE+ + + + + ++P WG + + +L++G PR G +
Sbjct: 323 LYTAGIISYPRTETNQFSNDINLVKLIELHKDDPSWGTFAQNVLSQG-PNPRRGNKSDQA 381
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + T L R+Y ++ + FL S D
Sbjct: 382 HPPIHPTKYVTN--LVNMERRVYEFIVRTFLACCSKD 416
>gi|323456344|gb|EGB12211.1| hypothetical protein AURANDRAFT_19616, partial [Aureococcus
anophagefferens]
Length = 696
Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats.
Identities = 88/215 (40%), Positives = 115/215 (53%), Gaps = 1/215 (0%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L YGPCQTPTLGF V+R +I +F+PE +W L +G W R + FD VA
Sbjct: 202 LSYGPCQTPTLGFVVRREDEIATFEPEPYWFPDAALEVDGAFADATWARGRCFDRSVAAA 261
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ + V++ + +K P NTV+LLK AS L P MAM+ AE LY G
Sbjct: 262 LCRGAAAAGVATVVESTAGTSTKAPPLPFNTVDLLKAASRVLRLSPAMAMKHAEHLYLDG 321
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAKPRSGTDAGDHPPIT 188
F+SYPRTE+ +P S D R + A + WG + LL + +P+ G DAGDHPPIT
Sbjct: 322 FLSYPRTETNKFPPSMDLRAAIEQQAGDARWGAHAADLLERSAWRRPKRGLDAGDHPPIT 381
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P A +L A LY V + FL +VS D Y
Sbjct: 382 PTAPAPPGVLNGKAAALYDLVTRRFLASVSEDAAY 416
>gi|384486567|gb|EIE78747.1| DNA topoisomerase [Rhizopus delemar RA 99-880]
Length = 480
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 10/215 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKL 61
+L YG CQ PTLGF V RY Q+ +F PE+FW + Q+ + + W+R+ L
Sbjct: 113 MLSYGSCQFPTLGFVVDRYQQVKNFIPEEFWKITMTYSQSNVQPGEQRLTTEFNWKREHL 172
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
FD + + ++ R+ V + KQ SK +P L TV L KV AL MQ+
Sbjct: 173 FDQWACFILYEKCVEKRVATVTKVKSKQTSKWKPLPLTTVELQKVGCRALHMSGSRIMQI 232
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE LYT G ISYPRTE+ + S+FDF ++ N+P WG Y L + +PR+G +
Sbjct: 233 AEELYTAGLISYPRTETDQFDSNFDFMSLINQQTNDPRWGQYATLLRDGEFERPRNGKNN 292
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLG 215
HPPI P ++ + L + ++Y ++ + FLG
Sbjct: 293 DKAHPPIHP--TSYDRNLSGEKLKVYEFIARRFLG 325
>gi|392570043|gb|EIW63216.1| prokaryotic type I DNA topoisomerase [Trametes versicolor FP-101664
SS1]
Length = 961
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 111/219 (50%), Gaps = 9/219 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ------NGYELKLEWERQKLF 62
++ YGPCQ PTLGF V RY ++ +FKPE FW ++ L + +G E W R +F
Sbjct: 202 LISYGPCQFPTLGFVVARYNKLKNFKPEPFWYIYLSLTRPSATDSDGEETVFTWRRGHIF 261
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D + A + + V ++ K K +P L TV+L K S L P+ + +A
Sbjct: 262 DVNNAMALYDAALAHAMARVSKVTVKDTKKWKPLPLTTVDLQKAGSRLLKISPKRVLDIA 321
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DA 181
E LY +GF+SYPRTE+ Y FDF + +P WG + L G+ PR G D
Sbjct: 322 ESLYQRGFLSYPRTETDVYDPQFDFMTLIGKQTADPAWGGFAGGLQNGGFNAPRKGKHDD 381
Query: 182 GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P +A L D R+Y Y+ + FL + S D
Sbjct: 382 HAHPPIHP--TAHAGNLAGDEKRVYEYITRRFLASCSKD 418
>gi|261191759|ref|XP_002622287.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
gi|239589603|gb|EEQ72246.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
Length = 649
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 111/215 (51%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY ++ +F PE FW++ + G + W R+ LFD A
Sbjct: 191 LISYGSCQFPTLGFIVERYWRVRNFIPEPFWSIKLMHRKAGTRVNFSWARKHLFDRRTAV 250
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + SK +P L T+ L K S G Q +QLAE+LY +
Sbjct: 251 ILYERCLTSQNAQVQKVKTTPTSKWKPLPLTTLELQKCGSRFFGMDSQKVLQLAEKLYQK 310
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
G+ISYPRTE+ + D RG + A W DY L+ G++ PR+G D HPPI
Sbjct: 311 GWISYPRTETDQFDRGMDLRGLVQKQAQGGRWADYATALVEGGFSWPRNGHNDDKAHPPI 370
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ L + R++ +V + FL S D +
Sbjct: 371 HPVNFVNPTTLSHEEQRVHEFVVRRFLACCSKDAQ 405
>gi|395333070|gb|EJF65448.1| prokaryotic type I DNA topoisomerase, partial [Dichomitus squalens
LYAD-421 SS1]
Length = 1032
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 115/225 (51%), Gaps = 8/225 (3%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL-----HPYLVQNGYELKLEW 56
+ A+ ++ YGPCQ PTLGF V RY ++ +FKPE FW + P + + + W
Sbjct: 195 YEALKKELISYGPCQFPTLGFVVARYNKVKNFKPEPFWYIFLSLTRPSSDEEPVDTEFTW 254
Query: 57 ERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQ 116
R LF A + ++ + V ++ K+ K +P L TV+L K S L P+
Sbjct: 255 RRGHLFSLPAAWGLYEAALEHPVARVTKVTSKETKKWKPYPLTTVDLQKAGSRLLKLSPK 314
Query: 117 MAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
+ +AE LY QGF+SYPRTE+ Y FDF + +P WG + L G+ PR
Sbjct: 315 KILDIAEHLYQQGFLSYPRTETDVYDPQFDFMSLIQKQTADPAWGGFASGLREGGFTPPR 374
Query: 177 SG-TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
G D HPPI P A +++G D R+Y Y+ + FL + S D
Sbjct: 375 RGKNDDHAHPPIHPTAHAG-NLVG-DEKRVYEYIARRFLASCSKD 417
>gi|426192057|gb|EKV41995.1| hypothetical protein AGABI2DRAFT_154568 [Agaricus bisporus var.
bisporus H97]
Length = 703
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 111/219 (50%), Gaps = 7/219 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL---HPYLVQNG-YELKLEWERQKLFDF 64
I+ YGPCQ PTLGF VQRY Q+ +F PE FW + H G E W R LFD
Sbjct: 202 IVSYGPCQFPTLGFAVQRYNQVKNFIPEDFWYIFLSHTSDTPMGPRETAFSWNRGHLFDE 261
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V + + V++ V + K+ K +P L TV L K S L P+ + +AE+
Sbjct: 262 AVVAVLYEHVLEFPNARVAKVVNKETKKWKPLPLTTVELQKAGSRLLKMAPKKVLDIAEK 321
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGD 183
LY QGF+SYPRTE+ + FDF + + WG++ + L G+ PR G D
Sbjct: 322 LYQQGFVSYPRTETDQFDPQFDFMSLIQKQKADTNWGNFAQSLEQGGFTSPRKGKHDDKA 381
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P +A L D R+Y Y+ + FL S D +
Sbjct: 382 HPPIHP--TAHAGNLTGDEKRVYEYIARRFLACCSKDAE 418
>gi|149241681|ref|XP_001526340.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450463|gb|EDK44719.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 619
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 112/215 (52%), Gaps = 4/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
++ YG CQ PTLGF V RY ++ SFKPE FW + P + + + W R +FD F VA
Sbjct: 205 VVSYGTCQFPTLGFVVDRYKRVQSFKPEPFWFIEPTVWKEKKKTTFNWCRGHVFDRFYVA 264
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
++ +Q + + K+ + RP L TV L K S + A++ AE LY
Sbjct: 265 LQYES-CLQHEFGTITKLETKRTTNWRPLPLTTVELQKDCSRYFKMSAKAALEAAESLYN 323
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GF+SYPRTE+ YPSS DF G L + WG Y LL G PR+G+ D HP
Sbjct: 324 RGFLSYPRTETDKYPSSMDFSGILEKQKQDSRWGQYTLELLQRGLEAPRNGSHDDHAHPA 383
Query: 187 ITPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPD 220
I P+ + D L + ++Y YV + FL S D
Sbjct: 384 IHPVNYVSLDTLTNANEKKVYEYVVRRFLACCSKD 418
>gi|453089198|gb|EMF17238.1| DNA topoisomerase [Mycosphaerella populorum SO2202]
Length = 679
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 114/216 (52%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YG CQ PTLGF V+RY+++ +F PE FW++ + ++ W R+ LFD +A
Sbjct: 215 IISYGSCQFPTLGFVVERYMRVRNFVPETFWSIKVTHTKEDAKVSFNWARKHLFDRMIAV 274
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + +Q R V + SK RP L TV L K +S L Q M +AE LY +
Sbjct: 275 ILYEQCIQARHATVTKVQTMPTSKWRPLPLTTVELQKCSSRFLRMDSQRVMGIAESLYQK 334
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPV-WGDYVERLLAEGYAKPRSGT-DAGDHPP 186
GFISYPRTE+ + + D R + A N W + + LL+ G+ PR+G + HPP
Sbjct: 335 GFISYPRTETDQFDRNMDLRQLIQNQAQNQSRWSQHAQGLLSNGFQWPRAGRHNDKAHPP 394
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ L ++ R+Y ++ + FL S D K
Sbjct: 395 IHPVNFLGPSALDAESQRVYEFITRRFLACCSDDAK 430
>gi|354467838|ref|XP_003496375.1| PREDICTED: DNA topoisomerase 3-alpha [Cricetulus griseus]
gi|344245173|gb|EGW01277.1| DNA topoisomerase 3-alpha [Cricetulus griseus]
Length = 1004
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHRIKVTHDHKDGTVEFNWKRY 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPTATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTLDPHWGAFAQNILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ H PI P + + L D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHSPIHPTKYTSN--LQGDERRLYEFIVRHFLACCSQDAQ 450
>gi|299752369|ref|XP_001830882.2| hypothetical protein CC1G_02333 [Coprinopsis cinerea okayama7#130]
gi|298409801|gb|EAU90946.2| hypothetical protein CC1G_02333 [Coprinopsis cinerea okayama7#130]
Length = 929
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 117/223 (52%), Gaps = 15/223 (6%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV---QNGYE--LKLEWERQK 60
+T ++ YGPCQ PTLGF VQRYL++ F+PE FW +H L +G+ +K W+R
Sbjct: 198 ITSVVSYGPCQFPTLGFVVQRYLKVQDFRPETFWYIHLELNARDDDGHAQLVKFSWKRPH 257
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
FD+DVA V+ + V+ + +K+ K +P L TV L K S L P+
Sbjct: 258 QFDYDVAHSLYARVLDNVRARVLKVVKKETKKWKPLPLTTVELQKAGSRLLKMAPK---- 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTD 180
++ F+SYPRTE+ Y + FDF ++ + WGD+ RL G+ PR G +
Sbjct: 314 ---KILDARFLSYPRTETDQYDNQFDFMTLINKQTADNAWGDFARRLQQGGFNAPRKGKN 370
Query: 181 AGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P +A L D R+Y Y+ + FL + S D +
Sbjct: 371 NDKAHPPIHP--TAHAGHLTGDEKRVYEYITRRFLASCSEDAR 411
>gi|169622904|ref|XP_001804860.1| hypothetical protein SNOG_14677 [Phaeosphaeria nodorum SN15]
gi|160704874|gb|EAT77869.2| hypothetical protein SNOG_14677 [Phaeosphaeria nodorum SN15]
Length = 681
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 117/215 (54%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
++ YG CQ PTLGF V RYL++ +F PE FW + ++ ++K W R LFD V
Sbjct: 216 VISYGSCQFPTLGFVVDRYLRVRNFVPEPFWYIKVAHTKDKIDVKFNWRRGHLFDRLAVI 275
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F++ ++ + +V+ +++K K +P L TV L K S L Q M++AE LYT
Sbjct: 276 IIFERCLLA-KTAKVMKMAKKPTKKWKPLPLTTVELQKNGSRFLRMTSQEVMKVAEDLYT 334
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
+G+ISYPRTE+ + D R ++ + WG + + L+ G+ +PR G + HPP
Sbjct: 335 KGWISYPRTETDQFDRGMDLRALVARQTQDNAWGQFAQSLMDGGFKQPRDGRNNDKAHPP 394
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
I P+ L ++ R+Y +V + FL S D
Sbjct: 395 IHPVNYVAPTQLNQNEKRVYEFVVRRFLACCSEDA 429
>gi|119498155|ref|XP_001265835.1| DNA topoisomerase III, putative [Neosartorya fischeri NRRL 181]
gi|119413999|gb|EAW23938.1| DNA topoisomerase III, putative [Neosartorya fischeri NRRL 181]
Length = 571
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 114/223 (51%), Gaps = 1/223 (0%)
Query: 1 MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQK 60
M + ++ YG CQ PTLGF V RYL++ +FKPE FW + VQ ++ W R
Sbjct: 144 MCADLANKLISYGSCQFPTLGFVVDRYLRVKNFKPETFWGIKVVHVQERKKVNFLWRRVH 203
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
LFD T+ + + + +V +++K SK RP L TV+L + S L M+
Sbjct: 204 LFDRAAVTVMLERCLLAKTAKVTKVNQKPTSKWRPLPLTTVDLQMMGSRYLRMDSSAVMK 263
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT- 179
AE LYT+G+ISYPRTE+ + D + + + WG+Y L+ + PRSG
Sbjct: 264 AAESLYTKGYISYPRTETDQFDKGIDLKKLIEKQYPDTNWGEYARGLINGAFKTPRSGRH 323
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P+ + L D ++Y +V + FL S D K
Sbjct: 324 NDRAHPPIHPVCWVSPSALNSDEKKVYEFVVRRFLACCSDDAK 366
>gi|70989103|ref|XP_749401.1| DNA topoisomerase III [Aspergillus fumigatus Af293]
gi|66847032|gb|EAL87363.1| DNA topoisomerase III, putative [Aspergillus fumigatus Af293]
gi|159128816|gb|EDP53930.1| DNA topoisomerase III, putative [Aspergillus fumigatus A1163]
Length = 629
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RYL++ +FKPE FW + VQ ++ W R LFD T
Sbjct: 210 LISYGSCQFPTLGFVVDRYLRVKNFKPETFWGIKVVHVQERKKVNFLWRRVHLFDRAAVT 269
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V +++K SK RP L TV+L + S L M+ AE LYT+
Sbjct: 270 VMLERCLLAKTAKVTKVNQKPTSKWRPLPLTTVDLQMMGSRYLRMDSSAVMKAAESLYTK 329
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPI 187
G+ISYPRTE+ + D + + + WG+Y L+ + PRSG + HPPI
Sbjct: 330 GYISYPRTETDQFDKGIDLKKLIEKQYPDTNWGEYARGLINGAFKTPRSGRHNDRAHPPI 389
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ + L D ++Y +V + FL S D K
Sbjct: 390 HPVCWVSPSALNSDEKKVYEFVVRRFLACCSDDAK 424
>gi|242014828|ref|XP_002428087.1| DNA topoisomerase 3-alpha, putative [Pediculus humanus corporis]
gi|212512606|gb|EEB15349.1| DNA topoisomerase 3-alpha, putative [Pediculus humanus corporis]
Length = 901
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 75/220 (34%), Positives = 122/220 (55%), Gaps = 5/220 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWERQKLFDFD 65
+ ++ YG CQ PTLGF V+R+ I+ F E FW + N + WER ++FD
Sbjct: 203 STVVSYGSCQFPTLGFVVERFKNISQFISEPFWRIEVKDNSNKNLIVDFNWERNRMFDKS 262
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ ++ + +VI + K +SK RP L+TV L K+AS L ++A++ AE+L
Sbjct: 263 CCEVLYDKCIESNLAKVIKVDSKPKSKYRPKPLDTVELEKLASKKLKINAKLALKTAEKL 322
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-H 184
YTQG+ISYPRTE+ +P D R + + WG++ ++L +G P GT + H
Sbjct: 323 YTQGYISYPRTETNIFPKELDLRPLVQRQTTDSNWGEFALKVLVDG-PNPNQGTKSDQAH 381
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PPI P++ A+ ++ G + +Y + +HFL +S + + I
Sbjct: 382 PPIHPIKYAS-NLTGVEK-NIYELIVRHFLACLSKNAEGI 419
>gi|414864981|tpg|DAA43538.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
Length = 915
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 117/217 (53%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+L+L YGPCQ PTLGF V+R+ +I + +PE+FWT++ + W R LFD+
Sbjct: 215 SLVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCTHTSDEGTASFGWIRGHLFDYSC 274
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A ++ + + + V ++ +++ K P L+TV L K AS + M++AE LY
Sbjct: 275 AISIYEMCVSEPMATVQNVRNQEKLKYPPYPLSTVELQKRASRYFRMSSEHTMKVAEELY 334
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPRS-GTDAG 182
GFISYPRTE+ + + D + N+PVWG Y +RLL A + P + G D
Sbjct: 335 QAGFISYPRTETDNFSPNTDLHAIVREQVNHPVWGAYAQRLLNPEARLWRNPSNGGHDDK 394
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + S E D RLY +V +HFL S
Sbjct: 395 AHPPIHPTKFSEGERNWSPDHTRLYEFVVRHFLACCS 431
>gi|157116652|ref|XP_001658595.1| prokaryotic DNA topoisomerase [Aedes aegypti]
gi|108876378|gb|EAT40603.1| AAEL007683-PA [Aedes aegypti]
Length = 1021
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 4/217 (1%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+V ++ YG CQ PTLGF RY +I F P++FW + + ++ W R +LFD
Sbjct: 225 IVNNLVSYGSCQIPTLGFVAHRYKEIEKFIPQEFWKIKLNHTIDELTVEFNWARNRLFDK 284
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ L + +++++ ++ K ++K RP L+TV L K+ S L + M +AE+
Sbjct: 285 QCCEAYLMLCQSEPLVKIVSVTNKPKNKWRPTPLDTVELEKLGSRKLKINAKQTMTIAEK 344
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD- 183
LYTQG ISYPRTE+ + + + +NP WG + +++L G PR+G +
Sbjct: 345 LYTQGIISYPRTETNMFTNDMKLAPLVEMQTDNPEWGGFAQKVLQWG-PNPRNGKKSDQA 403
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + + L D R+Y V +HFL +S D
Sbjct: 404 HPPIHPTKYVSN--LTGDEKRIYELVVRHFLACISKD 438
>gi|322801677|gb|EFZ22300.1| hypothetical protein SINV_07705 [Solenopsis invicta]
Length = 1052
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 118/215 (54%), Gaps = 4/215 (1%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
L++ YG CQ PTLGF V+R+L I FK E +W L ++G ++ W R +LF+
Sbjct: 204 NLLISYGSCQFPTLGFVVERFLAIDRFKSEPYWKLRIIDDRDGISVEFRWARVRLFEKMP 263
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+F + ++ V I+ K +SK RP L+T+ L K S L + M++AERLY
Sbjct: 264 CQIFLDMCLERPDATVEKITCKPKSKWRPLPLDTIELEKQGSRKLRLNAKETMRIAERLY 323
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HP 185
TQGFISYPRTE+ +P + + N WGD+ LL G PR G + HP
Sbjct: 324 TQGFISYPRTETDIFPKEMNLTSLVQQQVPNRDWGDFARNLLESGVT-PRQGKKSDQAHP 382
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
PI P + T+ + G +A ++Y +V +HFL +S +
Sbjct: 383 PIHPTK-YTDSLQGNEA-KVYEFVVRHFLACLSKN 415
>gi|449304688|gb|EMD00695.1| hypothetical protein BAUCODRAFT_60941 [Baudoinia compniacensis UAMH
10762]
Length = 675
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 111/222 (50%), Gaps = 1/222 (0%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKL 61
F A ++ YG CQ PTLGF V+RYL++ +F PE FWT+ ++G ++ W R L
Sbjct: 209 FGAEERQVISYGSCQFPTLGFVVERYLRVRNFVPETFWTIKVMHEKHGIKVNFRWARDHL 268
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
FD + + + R+ V + K SK +P L TV L K S L MQ+
Sbjct: 269 FDRVAVIVLFERCLTARVARVTGVQTKPASKWKPLPLTTVELQKCGSRFLRMDSHRVMQV 328
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE LY +G+ISYPRTE+ + D R + W + + L+ G+++PR G +
Sbjct: 329 AEGLYQKGWISYPRTETDQFDRGMDLRALVQKQTQGGAWAQFAQALVNGGFSQPRQGRNN 388
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ L + R++ +V + FL S D +
Sbjct: 389 DKAHPPIHPVNFVLPTQLSAEEQRVHEFVVRRFLACCSQDAR 430
>gi|308198103|ref|XP_001386841.2| DNA topoisomerase [Scheffersomyces stipitis CBS 6054]
gi|149388862|gb|EAZ62818.2| DNA topoisomerase [Scheffersomyces stipitis CBS 6054]
Length = 616
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 111/212 (52%), Gaps = 2/212 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YG CQ PTLGF V RY ++ SF PEKFW + + + + W + + FD T
Sbjct: 208 YGTCQFPTLGFVVDRYKRVKSFIPEKFWYIAVDIRKQNQKSSFAWTKGRFFDRMFVTQLY 267
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ +Q + ++ K+ + RP L TV L K + + A+ AERLY +GF+
Sbjct: 268 QDCLQTEEGTITNVESKRTTNWRPLPLTTVELQKDCARFFRMSAKAALDAAERLYNKGFL 327
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITPM 190
SYPRTE+ ++P++ DF G ++ + WG Y L+A G+ PR+G+ D HP I P+
Sbjct: 328 SYPRTETDSFPATMDFAGVIAKQTGDGRWGAYANSLMANGHEMPRNGSHDDKAHPAIHPV 387
Query: 191 R-SATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
A + + D ++Y YV + FL S D
Sbjct: 388 NYVAIDSLTSADEKKVYEYVVRRFLACCSKDA 419
>gi|389584867|dbj|GAB67598.1| DNA topoisomerase III alpha [Plasmodium cynomolgi strain B]
Length = 646
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 32/245 (13%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYE-------------- 51
T I+ YGPCQ PTLGF V RY+ I +F E +W++ YL ++G +
Sbjct: 204 TSIISYGPCQFPTLGFVVNRYMDIKNFVSEYYWSIKMQYLYEDGDKSGDEPEWGISKKET 263
Query: 52 ------------LKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLN 99
+ W R +L+D + + +++ + + +I E Q K RP LN
Sbjct: 264 KRKKEDTNQNTIVDFTWSRLRLYDHLAVVLIYEDLLKSPLCRITNIYENQVKKYRPLPLN 323
Query: 100 TVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPV 159
T+ + K+ S + M +AE+LY +GFISYPRTE+ +PSS + R + L +
Sbjct: 324 TLQMTKLVSKHFHISSKQCMNIAEKLYNKGFISYPRTETNYFPSSMNLRSIVGELKKSKA 383
Query: 160 WGDYVERLLAEG--YAKPRSGT-DAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLG 215
+G Y ++ L+EG + +PR G + HPPI P+++ + D + + W +Y +C+HFL
Sbjct: 384 FGSYAKK-LSEGNNFKEPRKGKLNDQAHPPIHPVKNMHKTDKVEEKEWIIYELICRHFLA 442
Query: 216 TVSPD 220
S D
Sbjct: 443 VCSDD 447
>gi|410082299|ref|XP_003958728.1| hypothetical protein KAFR_0H01830 [Kazachstania africana CBS 2517]
gi|372465317|emb|CCF59593.1| hypothetical protein KAFR_0H01830 [Kazachstania africana CBS 2517]
Length = 656
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 120/235 (51%), Gaps = 20/235 (8%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELKLEWERQKLFD-F 64
+I+ YGPCQ PTLGF V RY +I F PE+FW + L NG +W+R LFD
Sbjct: 227 VIISYGPCQFPTLGFVVDRYERIKHFTPEEFWYIQLQLNDEANGLSTTFQWDRGHLFDRL 286
Query: 65 DVATMFQK-LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
V +++ L +VID+ K SK RP L TV L K + L + ++ AE
Sbjct: 287 SVLALYENSLEFAGNKAKVIDLQSKPTSKYRPLPLTTVELQKNCARYLRLNAKQSLAAAE 346
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTL--------SALANNPVWGDYVERLLAEG---- 171
+LY +GF+SYPRTE+ +P++ D R + S +N W Y L++E
Sbjct: 347 KLYQKGFLSYPRTETDIFPATMDLRSLVEKQAQLDESTNSNKTAWASYAANLISENPETN 406
Query: 172 --YAKPRSGT-DAGDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ PRSG+ D HPPI P+ S A + R+Y YV +HFL S D K
Sbjct: 407 NRFKFPRSGSHDDKAHPPIHPITSLAPNAQIDSIERRVYEYVARHFLACCSEDAK 461
>gi|407924030|gb|EKG17090.1| DNA topoisomerase type IA [Macrophomina phaseolina MS6]
Length = 671
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 111/216 (51%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RY ++ +F PE FW + V+ ++ W+R LFD T
Sbjct: 206 VISYGSCQFPTLGFVVDRYFRVKNFVPEPFWNIKVMHVKEDIKVNFTWKRGHLFDRMAVT 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + R +V + +K SK RP L TV L K+ S L Q M+ AE+LY
Sbjct: 266 ILFERCLAARTAKVAKMQKKPTSKWRPLPLTTVELQKMGSRYLRMDSQAVMKAAEKLYQN 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ + S D R + + WG Y + L G+ +PR+G HPPI
Sbjct: 326 GWISYPRTETDQFDKSMDLRRIIEKQHQSRDWGTYAQSLTGGGFRQPRNGRHNDQAHPPI 385
Query: 188 TPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCK 222
P+ + + + R+Y +V + FL S D K
Sbjct: 386 HPVNFVEKSAIQNEQERRVYEFVVRRFLACCSEDAK 421
>gi|255726540|ref|XP_002548196.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134120|gb|EER33675.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 619
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VATMF 70
YG CQ PTLGF V RY ++ FKPE FW + ++ + W R FD VA ++
Sbjct: 209 YGTCQFPTLGFVVDRYKRVKRFKPEPFWYIEVETMKENKKTVFSWVRGHFFDRQYVALLY 268
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
K + + K+++ +P L TV L K + + A+ AE+LY +GF
Sbjct: 269 DKCCKSGEDGIISKLESKRKNNFKPFPLTTVELQKDCAKFFKMSAKQALDAAEKLYNKGF 328
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITP 189
ISYPRTE+ +P +F+G L +P WG Y +LL++G+ PRSG+ D HPPI P
Sbjct: 329 ISYPRTETDRFPKETNFQGLLQQQTQSPGWGSYTTQLLSDGFVTPRSGSHDDHAHPPIHP 388
Query: 190 MRSATEDMLGK-DAWRLYSYVCQHFLGTVSPD 220
++ LG ++Y YV + F+ S D
Sbjct: 389 IKYGVGSALGNAQEQKIYEYVVRRFIACCSKD 420
>gi|255572920|ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
gi|223533243|gb|EEF34998.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
Length = 833
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 113/217 (52%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
L+L YGPCQ PTLGF V+RY +I S + E+FWT++ W R LFD+
Sbjct: 211 NLVLSYGPCQFPTLGFIVERYWEIQSHESEEFWTINCSHTSVEGIANFSWMRGHLFDYTS 270
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + +L + + V + +K++ K P L+T+ L K AS + M++AE LY
Sbjct: 271 AVILYELCVLEPTATVTKVQQKEKQKYPPYPLSTIELEKRASRYFHMSSEQTMKVAEDLY 330
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRS----GTDAG 182
GFISYPRTE+ + S D + +P+WG Y +RLL G R+ G D
Sbjct: 331 QSGFISYPRTETDGFSSRTDLHTIVRDQQAHPIWGSYAQRLLDPGTGLWRNPSTGGHDDK 390
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + S E +D R+Y V +HFL VS
Sbjct: 391 AHPPIHPTKFSPGETGWSQDHHRVYELVVRHFLACVS 427
>gi|307201913|gb|EFN81542.1| DNA topoisomerase 3-alpha [Harpegnathos saltator]
Length = 1049
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 118/215 (54%), Gaps = 4/215 (1%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+++ YG CQ PTLGF V+R+L I FK E +W + +G ++ W R +LF+
Sbjct: 204 NMLISYGSCQFPTLGFVVERFLAIDRFKSEPYWKIKVIDEHDGIFVEFRWARVRLFEKMP 263
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+F + ++ V ++ K +SK RP L+T+ L K S L + M++AERLY
Sbjct: 264 CQIFLDMCLERPEATVEKVTCKPKSKWRPLPLDTIELEKQGSRKLRLNAKETMRIAERLY 323
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HP 185
TQG ISYPRTE+ +P + + NN WG++ LL G PR G + HP
Sbjct: 324 TQGLISYPRTETNIFPKELNLAALVEQQVNNQAWGNFARGLLESGII-PRQGKKSDQAHP 382
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
PI P + T+++ G +A ++Y +V +HFL VS +
Sbjct: 383 PIHPTK-YTDNLQGNEA-KVYEFVVRHFLACVSKN 415
>gi|260946535|ref|XP_002617565.1| hypothetical protein CLUG_03009 [Clavispora lusitaniae ATCC 42720]
gi|238849419|gb|EEQ38883.1| hypothetical protein CLUG_03009 [Clavispora lusitaniae ATCC 42720]
Length = 627
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 110/217 (50%), Gaps = 3/217 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTL F V RYL++ F+PE FW + + Q ++ W R LFD
Sbjct: 211 VVSYGTCQFPTLSFVVDRYLRVRKFRPEPFWFIDLVVDQKNQKVSFSWSRGHLFDKAFVY 270
Query: 69 MFQKLVMQDRILEVID-ISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ +M+ ++ + K S RP L TV L K S + A+ AE LYT
Sbjct: 271 LLYAQIMRSNSPPIVSSVGTKPTSHYRPFPLTTVELQKCCSRYFRMSAKQALDAAESLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGT-DAGDHP 185
GFISYPRTE+ ++P + D + ++ A + WG Y L +E Y PR G D HP
Sbjct: 331 AGFISYPRTETDSFPENMDLKSYITKQAQDARWGSYANMLTSENRYRHPRGGKHDDKAHP 390
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P++ A D L D ++Y +V + FL S D +
Sbjct: 391 PIYPVKYANIDSLRGDQKKVYEFVVRRFLACCSDDAR 427
>gi|295664843|ref|XP_002792973.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278494|gb|EEH34060.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 632
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 115/216 (53%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YG CQ PTLGF V RY ++ +FKPE FW + +++G + W R +FD A
Sbjct: 209 IISYGSCQFPTLGFVVDRYFRVKNFKPETFWVIKVSHLRDGKTVNFLWRRVHVFDRAAAV 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + +K K RP L TV+L + S L Q M++AE LYT+
Sbjct: 269 VLFERCLSAKTAKVTKVIKKPTRKWRPLPLTTVDLQMMGSKYLRMDSQKVMKIAEGLYTK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPI 187
GFISYPRTE+ + D + + + WG +RL+ + +PR+G + HPPI
Sbjct: 329 GFISYPRTETDQFDKGIDLKKLVEKQIPSENWGQNAQRLMDGAFTQPRAGRHNDKAHPPI 388
Query: 188 TP-MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + +A + +D R+Y +V + FL S D K
Sbjct: 389 HPVIYAAPAALSSEDERRVYEFVSRRFLACCSEDAK 424
>gi|315040584|ref|XP_003169669.1| hypothetical protein MGYG_07839 [Arthroderma gypseum CBS 118893]
gi|311345631|gb|EFR04834.1| hypothetical protein MGYG_07839 [Arthroderma gypseum CBS 118893]
Length = 671
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 112/215 (52%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RYL++ +F PE FW++ + G ++K W R+ LFD A
Sbjct: 213 LISYGSCQFPTLGFVVERYLRVRNFIPEPFWSIKLMHQKAGTKVKFSWARKHLFDRRTAV 272
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + SK +P L T+ L K S G Q +QLAE+LY +
Sbjct: 273 ILYERCLTSQNAQVQKVKTIPTSKWKPLPLTTLELQKCGSRFFGMDSQRVLQLAEKLYQK 332
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ + D RG W DY L+ G++ PR+G + HPPI
Sbjct: 333 GWISYPRTETDRFDRGMDLRGLDQKQGARRRWADYATALVQGGFSWPRNGHNNDKAHPPI 392
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ L + R++ +V + FL S D +
Sbjct: 393 HPVNFVNPTTLSHEEQRVHEFVVRLFLACCSKDAQ 427
>gi|258568124|ref|XP_002584806.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906252|gb|EEP80653.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 587
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 109/211 (51%), Gaps = 1/211 (0%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G CQ PTLGF V RY ++ +FKPE FW++ ++ + W R LFD + +
Sbjct: 188 GSCQFPTLGFVVDRYFRVKNFKPEPFWSIKVSHTRDRKTVNFNWSRGHLFDRAAVVVLFE 247
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ + +V +++K K RP L TV+L + + L Q M++AE LYT+GFIS
Sbjct: 248 RCLAAKTAKVTRVNKKPTKKWRPLPLTTVDLQMMGTKFLRMDSQKVMKVAESLYTKGFIS 307
Query: 133 YPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITPMR 191
YPRTE+ + D + + + WG Y + L+ + +PRSG + HPPI P+
Sbjct: 308 YPRTETDQFDKGIDLKKLVEKQVQDGAWGPYAQGLMDGAFKQPRSGRHNDKAHPPIHPVT 367
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+L D R+Y +V + FL S D K
Sbjct: 368 YVASSVLTADERRVYEFVVRRFLACCSEDAK 398
>gi|340724036|ref|XP_003400391.1| PREDICTED: DNA topoisomerase 3-alpha-like [Bombus terrestris]
Length = 1043
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 122/218 (55%), Gaps = 4/218 (1%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
+ +++ YG CQ PTLGF V+R+L I FK E +W + +++ ++ W R LF+
Sbjct: 234 TLADMLISYGSCQFPTLGFVVERFLAIKRFKSEPYWKIKVMDIRDNISVEFRWARGTLFE 293
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+F + ++ + V + K ++K RP L+T+ L K S L + M++AE
Sbjct: 294 KLPCEVFLDICLEQPMATVKKVLSKPKNKWRPLPLDTIELEKQGSRKLHLSAKDTMRIAE 353
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
+LYTQG ISYPRTE+ +P + ++ NN WG++ ++LL +G PR G +
Sbjct: 354 KLYTQGLISYPRTETNIFPKELNLVPLVNQQVNNSAWGNFAQQLLEKGLT-PRQGKKSDQ 412
Query: 184 -HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + T+ + G +A ++Y +V +HFL +S D
Sbjct: 413 AHPPIHPTK-YTDGLNGNEA-KVYEFVVRHFLACLSCD 448
>gi|448115381|ref|XP_004202802.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
gi|359383670|emb|CCE79586.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
Length = 620
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 4/214 (1%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVATMF 70
YG CQ PTLGF V RY ++ F PEKFW + + ++ W + +FD +A ++
Sbjct: 210 YGTCQFPTLGFVVDRYNRVKRFIPEKFWYISITVKKDNKTETFHWTKNHVFDRLYLALIY 269
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
Q + D EV+ + E+ SK RP L TV L K S + A+ AE+LY +GF
Sbjct: 270 QNCLKNDNA-EVVQLIERPTSKYRPLPLTTVELQKNCSMYFKMSAKRALDAAEKLYNKGF 328
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITP 189
+SYPRTE+ +P + D + + N WG Y LL + PR+G+ D HPPI P
Sbjct: 329 LSYPRTETDRFPPTMDLKAVIQKQTQNSTWGQYASELLNGKFRSPRAGSHDDKAHPPIHP 388
Query: 190 MRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCK 222
+ +ML D ++Y V + FL S D K
Sbjct: 389 VNFVKLEMLDNADEKKVYELVVRRFLACCSEDAK 422
>gi|350420688|ref|XP_003492591.1| PREDICTED: DNA topoisomerase 3-alpha-like [Bombus impatiens]
Length = 1012
Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 121/217 (55%), Gaps = 4/217 (1%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ +++ YG CQ PTLGF V+R+L I FK E +W + +++ ++ W R LF+
Sbjct: 202 LADMLISYGSCQFPTLGFVVERFLAIKRFKSEPYWKIKVMDIRDNISVEFRWARGTLFEK 261
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+F + ++ + V + K ++K RP L+T+ L K S L + M++AE+
Sbjct: 262 LPCEVFLDICLEQPMATVKKVLSKPKNKWRPLPLDTIELEKQGSRKLHLSAKDTMRIAEK 321
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD- 183
LYTQG ISYPRTE+ +P + ++ +N WG++ ++LL +G PR G +
Sbjct: 322 LYTQGLISYPRTETNIFPKELNLVPLVNQQVSNSAWGNFAQQLLEKGLT-PRQGKKSDQA 380
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P++ A D L + ++Y +V +HFL +S D
Sbjct: 381 HPPIHPIKYA--DGLNGNEAKVYEFVVRHFLACLSCD 415
>gi|242036831|ref|XP_002465810.1| hypothetical protein SORBIDRAFT_01g046210 [Sorghum bicolor]
gi|241919664|gb|EER92808.1| hypothetical protein SORBIDRAFT_01g046210 [Sorghum bicolor]
Length = 860
Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 115/217 (52%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
L+L YGPCQ PTLGF V+R+ +I + +PE+FWT++ + W R LFD+
Sbjct: 215 NLVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCTHTSDEGTASFGWIRGHLFDYSC 274
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A ++ + + + V ++ +++ K P L+TV L K AS + M++AE LY
Sbjct: 275 AISIYEMCVSEPMATVQNVRNQEKLKYPPYPLSTVELQKRASRYFRMSSEHTMKVAEELY 334
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPRSGT-DAG 182
GFISYPRTE+ + + D + N+PVWG Y +RLL A + P +G D
Sbjct: 335 QAGFISYPRTETDNFSPNTDLHAIVREQVNHPVWGAYAQRLLNPEARLWRNPSNGGHDDK 394
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + S E D RLY V +HFL S
Sbjct: 395 AHPPIHPTKFSEGERNWSPDHIRLYELVVRHFLACCS 431
>gi|389741773|gb|EIM82961.1| prokaryotic type I DNA topoisomerase [Stereum hirsutum FP-91666
SS1]
Length = 637
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 116/221 (52%), Gaps = 10/221 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG------YELKLEWERQKLF 62
++ YGPCQ PTLGF V RY Q+ SF PE FW ++ + N E++ W R LF
Sbjct: 203 VISYGPCQFPTLGFVVSRYNQVQSFVPEAFWYIYLSIEPNAGSSKINEEVQFTWRRGHLF 262
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
+F+VA + ++V+ V +++K K +P L TV L K S L P+ + +A
Sbjct: 263 EFEVALVIYEVVLASPRARVTKVTKKNTKKWKPLPLTTVELQKAGSRLLKLAPKKILDIA 322
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERL-LAEGYAKPRSGTDA 181
E+LY QGF+SYPRTE+ Y FDF + +P WG + L +G+ PR G +
Sbjct: 323 EKLYQQGFLSYPRTETDQYDPQFDFMSLIEKQNVDPEWGQFAHMLQTQDGFNAPRKGKNN 382
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
HPPI P A LG D R+Y ++ + FL S D
Sbjct: 383 DHAHPPIHPTAHAAN--LGGDDKRVYEFIVRRFLACCSKDA 421
>gi|298709983|emb|CBJ31703.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 759
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 9/221 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-------PYLVQNGYELKLEWERQKL 61
++ YGPCQ PTLGF V RY +I +F+ E FW++ P W+R +L
Sbjct: 12 VISYGPCQFPTLGFIVDRYKRIQAFQSEAFWSIKMEYAEDDPRSPGGKARADFSWQRGRL 71
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D + ++ ++D + V + ++ +K RP ++TV L K AS + M +
Sbjct: 72 YDHACCAILYEMTVEDGVAVVTSVEARRVTKARPIPMSTVELQKRASRFCHISSERTMHV 131
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAKPRSGT- 179
AE LY +G ISYPRTE+ + FD L +NP +G+YV LL G+ PR G
Sbjct: 132 AEALYQRGIISYPRTETEKFKREFDINTLLGDFRDNPRFGNYVGGLLDNGGFLWPREGRG 191
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
D HPPI P +S + L D ++Y V +HFL S D
Sbjct: 192 DDSAHPPIHPTKSVDPNSLQADEKKIYELVTKHFLACCSKD 232
>gi|67483198|ref|XP_656880.1| DNA topoisomerase III [Entamoeba histolytica HM-1:IMSS]
gi|56474106|gb|EAL51494.1| DNA topoisomerase III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449704214|gb|EMD44500.1| DNA topoisomerase alpha, putative [Entamoeba histolytica KU27]
Length = 607
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 4/217 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L YG CQ PTLGF V RY QI +F E F+ ++ + +N + W+R +LFD +
Sbjct: 206 VLSYGACQFPTLGFVVDRYYQIKAFTKETFYKINCVVEKNSILTEFHWDRNRLFDRLICD 265
Query: 69 MFQKLVMQ-DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + ++ + +I EK + +P L TV+L K S M +AE+LY
Sbjct: 266 LLYEDALEYINSATITEILEKSRTNFKPLPLTTVDLQKACSKYFKISSNETMNIAEKLYN 325
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG--TDAGDHP 185
G ISYPRTE+ +PS + R + N ++ YV+ LL PR+G TD HP
Sbjct: 326 SGLISYPRTETNIFPSDMNHRKQIEMFQENRIYSSYVQELLNGKMKNPRNGKATDKS-HP 384
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P R+A + L + ++Y ++ +++L +S D +
Sbjct: 385 PIHPTRNANLNDLSEKERKIYDFIVRNYLANMSDDAR 421
>gi|167390327|ref|XP_001739303.1| DNA topoisomerase 3-alpha [Entamoeba dispar SAW760]
gi|165897077|gb|EDR24345.1| DNA topoisomerase 3-alpha, putative [Entamoeba dispar SAW760]
Length = 607
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 113/217 (52%), Gaps = 4/217 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L YG CQ PTLGF V RY QI +F E F+ ++ + +N + W+R +LFD +
Sbjct: 206 VLSYGACQFPTLGFVVDRYYQIKAFTKETFYKINCVVEKNSILTEFHWDRNRLFDRLICD 265
Query: 69 M-FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ ++ + + +I EK + +P L TV+L K S M +AE+LY
Sbjct: 266 LLYEDALEHINSATITEILEKSRTNFKPLPLTTVDLQKACSKYFKISSNETMTIAEKLYN 325
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG--TDAGDHP 185
G ISYPRTE+ +PS D + N ++ YV+ LL PR+G TD HP
Sbjct: 326 SGLISYPRTETNIFPSDMDHEKQIKMFQENRIYSSYVQELLNGKIKNPRNGKATDKS-HP 384
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P R+A + L + ++Y ++ +++L +S D +
Sbjct: 385 PIHPTRNANLNDLSEKERKIYDFIVRNYLANMSDDAR 421
>gi|296810820|ref|XP_002845748.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
gi|238843136|gb|EEQ32798.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
Length = 637
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 1/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY ++ +F PE FW++ + G + W R+ LFD A
Sbjct: 216 LISYGSCQFPTLGFIVERYWRVRNFIPEPFWSIKLMHRKAGKRVNFSWARKHLFDRRTAV 275
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + + SK +P L T+ L K S G Q +QLAE+LY +
Sbjct: 276 ILYERCLTSQNAQVQKVKTRPTSKWKPLPLTTLELQKCGSRFFGMDSQKVLQLAEKLYQK 335
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ + D RG + A W DY L+ G++ PR+G + HPPI
Sbjct: 336 GWISYPRTETDQFDRGMDLRGLVQKQAQGGRWADYATALVEGGFSWPRNGHNNDKAHPPI 395
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ L + ++ +V + FL S D +
Sbjct: 396 HPVNFVNPTTLSHEEQCIHEFVVRRFLACCSKDAQ 430
>gi|327310010|ref|YP_004336907.1| DNA topoisomerase [Thermoproteus uzoniensis 768-20]
gi|326946489|gb|AEA11595.1| DNA topoisomerase [Thermoproteus uzoniensis 768-20]
Length = 602
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 117/215 (54%), Gaps = 10/215 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L YGPCQTP LG V R L+ +FKPE+++ + + G E+++ + K + A +
Sbjct: 198 LSYGPCQTPVLGLVVSRELERLNFKPEEYFVVRAVVGTGGGEVEMRSKPFKRREEAEAAL 257
Query: 70 FQKLVMQDRILEVIDISEKQESKVRP-CGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ RI E + ++++VRP L TV L + AS L + A+ +AE LY
Sbjct: 258 AAARKAEGRIAE----ARYEKAEVRPPVPLETVELERRASRWLNIRAKAALDIAEELYRL 313
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+T YP + D R L L N P +G Y E LL + R +D G HPPI
Sbjct: 314 GYISYPRTETTIYPPTLDLRAILEELRNTP-FGQYAEDLLRRPFTPTRGRSDDGAHPPIH 372
Query: 189 PMRSA----TEDMLGKDAWRLYSYVCQHFLGTVSP 219
P R A E LG+ W++Y V +HFL T+SP
Sbjct: 373 PTRGAGRGEIEARLGQRGWKIYELVVRHFLATLSP 407
>gi|221486524|gb|EEE24785.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii GT1]
Length = 677
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 113/219 (51%), Gaps = 10/219 (4%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---------LKLEWERQKLF 62
YGPCQ+PTLGF V R++++ +F E +WT+ + + E + WERQ+LF
Sbjct: 210 YGPCQSPTLGFVVSRFVEVENFVREAYWTIRVTISKPDDEKGANAPPLSIDFTWERQRLF 269
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D + ++ +++ V D+ + +K RP L TV L K+AS L M +A
Sbjct: 270 DQLAVLVLYEMCLENPEATVTDVRGTERTKQRPVPLCTVELHKMASRKLRMSSARCMSIA 329
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DA 181
E LY +G ISYPRTE+ + + D + + WG Y ++L+ + P G D
Sbjct: 330 ESLYQRGIISYPRTETEVFSPTMDLLSLIRVHIGSTAWGTYAQKLVDGDFLWPSDGARDD 389
Query: 182 GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P++ L ++ W+LY +V +HFL S D
Sbjct: 390 KAHPPIHPLKLMQRSELEEEEWKLYEFVTRHFLACCSED 428
>gi|116192151|ref|XP_001221888.1| hypothetical protein CHGG_05793 [Chaetomium globosum CBS 148.51]
gi|88181706|gb|EAQ89174.1| hypothetical protein CHGG_05793 [Chaetomium globosum CBS 148.51]
Length = 680
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 105/204 (51%), Gaps = 1/204 (0%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L L YG CQ PTLGF V RY ++ +F PE FW + ++ ++ W R +LFD
Sbjct: 193 LTLSYGSCQFPTLGFVVDRYFRVKNFVPETFWGIKMMHERDDIKVNFNWSRHRLFDRMSV 252
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + + R +V + EK K +P L TV + K+A+ L Q AM +AE+LY
Sbjct: 253 VIFYERCLAARTAKVTKVQEKPTKKWKPLPLTTVEMQKMATRFLRMTGQQAMTVAEKLYN 312
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+GFISYPRTE+ + D R + + WG + + L+ G+ +PR G D HPP
Sbjct: 313 KGFISYPRTETDRFDKGMDLRALVRKQTQDNRWGAFAQNLVDGGFQQPRQGRHDDKAHPP 372
Query: 187 ITPMRSATEDMLGKDAWRLYSYVC 210
I P+ A L R+Y V
Sbjct: 373 IHPITYAAAGALDDSERRVYELVA 396
>gi|237834007|ref|XP_002366301.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii ME49]
gi|211963965|gb|EEA99160.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii ME49]
Length = 677
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 113/219 (51%), Gaps = 10/219 (4%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---------LKLEWERQKLF 62
YGPCQ+PTLGF V R++++ +F E +WT+ + + E + WERQ+LF
Sbjct: 210 YGPCQSPTLGFVVSRFVEVENFVREAYWTIRVTISKPDDEKGANAPPLSIDFTWERQRLF 269
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D + ++ +++ V D+ + +K RP L TV L K+AS L M +A
Sbjct: 270 DQLAVLVLYEMCLENPEATVTDVRGTERTKQRPVPLCTVELHKMASRKLRMSSARCMSIA 329
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DA 181
E LY +G ISYPRTE+ + + D + + WG Y ++L+ + P G D
Sbjct: 330 ESLYQRGIISYPRTETEVFSPTMDLLSLIRVHIGSTAWGTYAQKLVDGDFLWPSDGARDD 389
Query: 182 GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P++ L ++ W+LY +V +HFL S D
Sbjct: 390 KAHPPIHPLKLMQRSELEEEEWKLYEFVTRHFLACCSED 428
>gi|401826074|ref|XP_003887131.1| topoisomerase IA [Encephalitozoon hellem ATCC 50504]
gi|392998289|gb|AFM98150.1| topoisomerase IA [Encephalitozoon hellem ATCC 50504]
Length = 723
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 79/215 (36%), Positives = 115/215 (53%), Gaps = 5/215 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ +GPCQ PTLGF V+R + F PE FWTL E + W R +FD +
Sbjct: 194 IVSFGPCQVPTLGFVVERAKERERFVPEMFWTLKFKAKNKKLEDEFTWRRGSVFDKNCVI 253
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
F + ++ ++ K+ +K RP L TV L K SS M++AE LY +
Sbjct: 254 CFHR-ELEGESARIVLKEIKERTKYRPLPLRTVELQKKCSSYFKLSGHKVMEIAEGLYNR 312
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPPI 187
G+ISYPRTE+ + FDF+ L+ L+ + G+Y ER LA G+ PR+G + H PI
Sbjct: 313 GYISYPRTETDVFDKKFDFKYILNKLSRDSKVGEYAER-LARGFNYPRNGKNNDMAHLPI 371
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ T + G D +Y ++C+ FLG +S D K
Sbjct: 372 YPLKEGT-GLSGGDR-DIYDFICRRFLGCISKDAK 404
>gi|328860051|gb|EGG09158.1| hypothetical protein MELLADRAFT_34533 [Melampsora larici-populina
98AG31]
Length = 749
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 4/218 (1%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD 65
+ ++ YGPCQ PTLGF V +Y ++ +F PE FW +H L + ++ +W+R +LFD
Sbjct: 201 IETVISYGPCQFPTLGFVVDQYDKVAAFVPETFWYIHVTLERENVSVEFKWKRNRLFDHH 260
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A ++ + + +++ K +K +P L TV L K S L P+ + +AE+L
Sbjct: 261 TAFALYEMCADEPEATIQNVAVKPATKWKPLPLTTVELQKTGSRLLHLTPKTILDIAEKL 320
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSG-TDAGD 183
Y +G +SYPRTE+ + +FD + + N+ WG + RL EG + PR+G +
Sbjct: 321 YIRGLVSYPRTETDQFDPAFDHQALIEKQINDASWGGFASRLKNEGAFQLPRNGKKNDKA 380
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
HPPI P A + L D R+Y + + +L S +
Sbjct: 381 HPPIHPTAHAND--LASDEKRVYELITRRYLACCSKNA 416
>gi|171186180|ref|YP_001795099.1| DNA topoisomerase type IA central domain-containing protein
[Pyrobaculum neutrophilum V24Sta]
gi|170935392|gb|ACB40653.1| DNA topoisomerase type IA central domain protein [Pyrobaculum
neutrophilum V24Sta]
Length = 604
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 115/220 (52%), Gaps = 18/220 (8%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKL---EWERQKLFDFDV 66
L YGPCQTP LG V R LQ +FKPEK++ + + G+ +++ E + +
Sbjct: 195 LSYGPCQTPVLGIVVTRELQRRNFKPEKYYVIKALVEIGGHAVEMASTERFKTRREAETA 254
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A ++ V++ + +Q + P L TV L + AS LG + A+ AE LY
Sbjct: 255 AASVKRGVVKTAVY-------RQHAVQPPEPLETVELERRASRWLGISSKKALDTAEELY 307
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
G+ISYPRTE+T YPS+ D R L LA G Y E LL G+ R +D G HPP
Sbjct: 308 RAGYISYPRTETTIYPSTLDLREVLKELAGGE-HGPYAEELLKRGFKPTRGDSDDGAHPP 366
Query: 187 ITPMRSATE-------DMLGKDAWRLYSYVCQHFLGTVSP 219
I P R AT+ LG+ AW +Y V +HFL T+SP
Sbjct: 367 IYPTRGATQGEIYKVFGKLGRQAWAIYDLVVRHFLATLSP 406
>gi|451997773|gb|EMD90238.1| hypothetical protein COCHEDRAFT_1104554 [Cochliobolus
heterostrophus C5]
Length = 669
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 1/214 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RYL++ +F PE FW + ++G ++K W R LFD
Sbjct: 209 LISYGSCQFPTLGFVVDRYLRVRNFVPEPFWYIKVAHEKDGIDVKFNWRRGHLFDRMAVI 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + V +++K K +P L TV L K S L Q M++AE LYT+
Sbjct: 269 LIMERCLLSKTATVTKMAKKASKKWKPLPLTTVELQKNGSRFLRMTSQDVMKVAEELYTK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ + D R + + WG + + L+ G+ +PRSG + HPPI
Sbjct: 329 GWISYPRTETDQFDRGMDLRTLVGRQTQDGRWGPFAQNLMNGGFQQPRSGRNNDKAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P+ L + +Y +V + FL S D
Sbjct: 389 HPVNYVAPTQLNERERAVYEFVVRRFLACCSEDA 422
>gi|407035752|gb|EKE37830.1| DNA topoisomerase domain containing protein [Entamoeba nuttalli
P19]
Length = 607
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 4/217 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L YG CQ PTLGF V RY QI +F E F+ ++ + +N + W+R +LFD +
Sbjct: 206 VLSYGACQFPTLGFVVDRYYQIKAFTKETFYKINCVVEKNSILTEFHWDRNRLFDRLICD 265
Query: 69 MFQKLVMQ-DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + ++ + +I EK + +P L TV+L K S M +AE+LY
Sbjct: 266 LLYEDALEYINSATITEILEKGRTNFKPLPLTTVDLQKACSKYFKISSNETMNIAEKLYN 325
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG--TDAGDHP 185
G ISYPRTE+ +PS + R + N ++ YV+ LL PR+G TD HP
Sbjct: 326 SGLISYPRTETNIFPSDMNHRKQIEMFQENRIYSSYVQELLNGKMKNPRNGKATDKS-HP 384
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P R+A + L + ++Y ++ +++L +S D +
Sbjct: 385 PIHPTRNANLNDLSEKERKIYDFIVRNYLANMSDDAR 421
>gi|325191457|emb|CCA26230.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2383
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKL 61
++ YGPCQ PTLGF V+R+L+I +F E+F+ H +V + E K W+RQ+L
Sbjct: 233 VISYGPCQFPTLGFVVERHLEIENFVREEFY--HIVVVHSPSEPLDKRASTKFTWKRQRL 290
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D + +LV+Q+ I + + +K K +P L TV L K AS L + M+
Sbjct: 291 YDRLSCLVIYELVLQNPIATINFVEKKATWKRKPLPLTTVELQKRASRWLRISSEETMKA 350
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG- 178
AE LY +GFISYPRTE++ + D + +N+ WG YV L +G Y +PR+G
Sbjct: 351 AENLYNKGFISYPRTETSKFKEGTDLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGT 410
Query: 179 TDAGDHPPITPMRSATEDMLGKDAW-RLYSYVCQHFLGTVSPDCK 222
TD HPPI P ++A + L + A ++Y + HFL S D K
Sbjct: 411 TDDEAHPPIHPTKAAELNSLNEMAEKKVYELIVLHFLACCSKDAK 455
>gi|325191455|emb|CCA26228.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2390
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKL 61
++ YGPCQ PTLGF V+R+L+I +F E+F+ H +V + E K W+RQ+L
Sbjct: 233 VISYGPCQFPTLGFVVERHLEIENFVREEFY--HIVVVHSPSEPLDKRASTKFTWKRQRL 290
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D + +LV+Q+ I + + +K K +P L TV L K AS L + M+
Sbjct: 291 YDRLSCLVIYELVLQNPIATINFVEKKATWKRKPLPLTTVELQKRASRWLRISSEETMKA 350
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG- 178
AE LY +GFISYPRTE++ + D + +N+ WG YV L +G Y +PR+G
Sbjct: 351 AENLYNKGFISYPRTETSKFKEGTDLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGT 410
Query: 179 TDAGDHPPITPMRSATEDMLGKDAW-RLYSYVCQHFLGTVSPDCK 222
TD HPPI P ++A + L + A ++Y + HFL S D K
Sbjct: 411 TDDEAHPPIHPTKAAELNSLNEMAEKKVYELIVLHFLACCSKDAK 455
>gi|325191459|emb|CCA26232.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2392
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKL 61
++ YGPCQ PTLGF V+R+L+I +F E+F+ H +V + E K W+RQ+L
Sbjct: 233 VISYGPCQFPTLGFVVERHLEIENFVREEFY--HIVVVHSPSEPLDKRASTKFTWKRQRL 290
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D + +LV+Q+ I + + +K K +P L TV L K AS L + M+
Sbjct: 291 YDRLSCLVIYELVLQNPIATINFVEKKATWKRKPLPLTTVELQKRASRWLRISSEETMKA 350
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG- 178
AE LY +GFISYPRTE++ + D + +N+ WG YV L +G Y +PR+G
Sbjct: 351 AENLYNKGFISYPRTETSKFKEGTDLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGT 410
Query: 179 TDAGDHPPITPMRSATEDMLGKDAW-RLYSYVCQHFLGTVSPDCK 222
TD HPPI P ++A + L + A ++Y + HFL S D K
Sbjct: 411 TDDEAHPPIHPTKAAELNSLNEMAEKKVYELIVLHFLACCSKDAK 455
>gi|325191461|emb|CCA26234.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2356
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKL 61
++ YGPCQ PTLGF V+R+L+I +F E+F+ H +V + E K W+RQ+L
Sbjct: 233 VISYGPCQFPTLGFVVERHLEIENFVREEFY--HIVVVHSPSEPLDKRASTKFTWKRQRL 290
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D + +LV+Q+ I + + +K K +P L TV L K AS L + M+
Sbjct: 291 YDRLSCLVIYELVLQNPIATINFVEKKATWKRKPLPLTTVELQKRASRWLRISSEETMKA 350
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG- 178
AE LY +GFISYPRTE++ + D + +N+ WG YV L +G Y +PR+G
Sbjct: 351 AENLYNKGFISYPRTETSKFKEGTDLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGT 410
Query: 179 TDAGDHPPITPMRSATEDMLGKDAW-RLYSYVCQHFLGTVSPDCK 222
TD HPPI P ++A + L + A ++Y + HFL S D K
Sbjct: 411 TDDEAHPPIHPTKAAELNSLNEMAEKKVYELIVLHFLACCSKDAK 455
>gi|325191456|emb|CCA26229.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2387
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKL 61
++ YGPCQ PTLGF V+R+L+I +F E+F+ H +V + E K W+RQ+L
Sbjct: 233 VISYGPCQFPTLGFVVERHLEIENFVREEFY--HIVVVHSPSEPLDKRASTKFTWKRQRL 290
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D + +LV+Q+ I + + +K K +P L TV L K AS L + M+
Sbjct: 291 YDRLSCLVIYELVLQNPIATINFVEKKATWKRKPLPLTTVELQKRASRWLRISSEETMKA 350
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG- 178
AE LY +GFISYPRTE++ + D + +N+ WG YV L +G Y +PR+G
Sbjct: 351 AENLYNKGFISYPRTETSKFKEGTDLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGT 410
Query: 179 TDAGDHPPITPMRSATEDMLGKDAW-RLYSYVCQHFLGTVSPDCK 222
TD HPPI P ++A + L + A ++Y + HFL S D K
Sbjct: 411 TDDEAHPPIHPTKAAELNSLNEMAEKKVYELIVLHFLACCSKDAK 455
>gi|325191460|emb|CCA26233.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2385
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKL 61
++ YGPCQ PTLGF V+R+L+I +F E+F+ H +V + E K W+RQ+L
Sbjct: 233 VISYGPCQFPTLGFVVERHLEIENFVREEFY--HIVVVHSPSEPLDKRASTKFTWKRQRL 290
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D + +LV+Q+ I + + +K K +P L TV L K AS L + M+
Sbjct: 291 YDRLSCLVIYELVLQNPIATINFVEKKATWKRKPLPLTTVELQKRASRWLRISSEETMKA 350
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG- 178
AE LY +GFISYPRTE++ + D + +N+ WG YV L +G Y +PR+G
Sbjct: 351 AENLYNKGFISYPRTETSKFKEGTDLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGT 410
Query: 179 TDAGDHPPITPMRSATEDMLGKDAW-RLYSYVCQHFLGTVSPDCK 222
TD HPPI P ++A + L + A ++Y + HFL S D K
Sbjct: 411 TDDEAHPPIHPTKAAELNSLNEMAEKKVYELIVLHFLACCSKDAK 455
>gi|325191458|emb|CCA26231.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2417
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKL 61
++ YGPCQ PTLGF V+R+L+I +F E+F+ H +V + E K W+RQ+L
Sbjct: 233 VISYGPCQFPTLGFVVERHLEIENFVREEFY--HIVVVHSPSEPLDKRASTKFTWKRQRL 290
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D + +LV+Q+ I + + +K K +P L TV L K AS L + M+
Sbjct: 291 YDRLSCLVIYELVLQNPIATINFVEKKATWKRKPLPLTTVELQKRASRWLRISSEETMKA 350
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG- 178
AE LY +GFISYPRTE++ + D + +N+ WG YV L +G Y +PR+G
Sbjct: 351 AENLYNKGFISYPRTETSKFKEGTDLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGT 410
Query: 179 TDAGDHPPITPMRSATEDMLGKDAW-RLYSYVCQHFLGTVSPDCK 222
TD HPPI P ++A + L + A ++Y + HFL S D K
Sbjct: 411 TDDEAHPPIHPTKAAELNSLNEMAEKKVYELIVLHFLACCSKDAK 455
>gi|325191452|emb|CCA26225.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2419
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKL 61
++ YGPCQ PTLGF V+R+L+I +F E+F+ H +V + E K W+RQ+L
Sbjct: 233 VISYGPCQFPTLGFVVERHLEIENFVREEFY--HIVVVHSPSEPLDKRASTKFTWKRQRL 290
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D + +LV+Q+ I + + +K K +P L TV L K AS L + M+
Sbjct: 291 YDRLSCLVIYELVLQNPIATINFVEKKATWKRKPLPLTTVELQKRASRWLRISSEETMKA 350
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG- 178
AE LY +GFISYPRTE++ + D + +N+ WG YV L +G Y +PR+G
Sbjct: 351 AENLYNKGFISYPRTETSKFKEGTDLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGT 410
Query: 179 TDAGDHPPITPMRSATEDMLGKDAW-RLYSYVCQHFLGTVSPDCK 222
TD HPPI P ++A + L + A ++Y + HFL S D K
Sbjct: 411 TDDEAHPPIHPTKAAELNSLNEMAEKKVYELIVLHFLACCSKDAK 455
>gi|325191454|emb|CCA26227.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2412
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKL 61
++ YGPCQ PTLGF V+R+L+I +F E+F+ H +V + E K W+RQ+L
Sbjct: 233 VISYGPCQFPTLGFVVERHLEIENFVREEFY--HIVVVHSPSEPLDKRASTKFTWKRQRL 290
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D + +LV+Q+ I + + +K K +P L TV L K AS L + M+
Sbjct: 291 YDRLSCLVIYELVLQNPIATINFVEKKATWKRKPLPLTTVELQKRASRWLRISSEETMKA 350
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG- 178
AE LY +GFISYPRTE++ + D + +N+ WG YV L +G Y +PR+G
Sbjct: 351 AENLYNKGFISYPRTETSKFKEGTDLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGT 410
Query: 179 TDAGDHPPITPMRSATEDMLGKDAW-RLYSYVCQHFLGTVSPDCK 222
TD HPPI P ++A + L + A ++Y + HFL S D K
Sbjct: 411 TDDEAHPPIHPTKAAELNSLNEMAEKKVYELIVLHFLACCSKDAK 455
>gi|325191453|emb|CCA26226.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2414
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-------LKLEWERQKL 61
++ YGPCQ PTLGF V+R+L+I +F E+F+ H +V + E K W+RQ+L
Sbjct: 233 VISYGPCQFPTLGFVVERHLEIENFVREEFY--HIVVVHSPSEPLDKRASTKFTWKRQRL 290
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D + +LV+Q+ I + + +K K +P L TV L K AS L + M+
Sbjct: 291 YDRLSCLVIYELVLQNPIATINFVEKKATWKRKPLPLTTVELQKRASRWLRISSEETMKA 350
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG- 178
AE LY +GFISYPRTE++ + D + +N+ WG YV L +G Y +PR+G
Sbjct: 351 AENLYNKGFISYPRTETSKFKEGTDLINLIKLHSNHSSWGRYVTEELIQGNKYERPRNGT 410
Query: 179 TDAGDHPPITPMRSATEDMLGKDAW-RLYSYVCQHFLGTVSPDCK 222
TD HPPI P ++A + L + A ++Y + HFL S D K
Sbjct: 411 TDDEAHPPIHPTKAAELNSLNEMAEKKVYELIVLHFLACCSKDAK 455
>gi|452846702|gb|EME48634.1| hypothetical protein DOTSEDRAFT_67618 [Dothistroma septosporum
NZE10]
Length = 675
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 108/214 (50%), Gaps = 1/214 (0%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
+ YG CQ PTLGF V+RYL++ +F PE FW + ++G ++ +W R LFD V +
Sbjct: 212 ISYGSCQFPTLGFVVERYLRVRNFVPETFWGIKVMHQKDGIKVNFKWSRNHLFDRMVVVI 271
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ + R V + K SK +P L TV L K S L Q M +AE+LY G
Sbjct: 272 LFERCLTARTARVTKVQTKPTSKWKPLPLTTVELQKCGSRFLRMDSQTVMTVAEKLYQSG 331
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPIT 188
+ISYPRTE+ Y + + + WG + + L G++ PR+G + HPPI
Sbjct: 332 WISYPRTETDQYDRGMNLQALVQKQTQGQAWGLFAQGLANGGFSWPRTGRNNDKAHPPIH 391
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ L + R+Y +V + FL S D +
Sbjct: 392 PVNFVAPTALNQQEQRVYEFVVRRFLACCSEDAR 425
>gi|302832397|ref|XP_002947763.1| hypothetical protein VOLCADRAFT_79791 [Volvox carteri f.
nagariensis]
gi|300267111|gb|EFJ51296.1| hypothetical protein VOLCADRAFT_79791 [Volvox carteri f.
nagariensis]
Length = 936
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 7/219 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ----NGYELKLEWERQKLFDF 64
+L YGPCQ PTLG VQR ++ + E+FWT+H + G EW R +LFD
Sbjct: 220 VLSYGPCQFPTLGIIVQRAWEVQNHVREQFWTIHVAYREAPTAGGGSCVFEWARGRLFDE 279
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
VA M+ ++ + V+ + ++ P L+T+ + K A++ L + M+LAE
Sbjct: 280 AVAEMYYEICEEAGTAVVVSVRGTTRTRQAPAPLSTLEMQKRATAKLRMSGERIMKLAEE 339
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA-EGYAKPR-SGTDAG 182
LY GFISYPRTE+ + D +G ++ +P WG + +R+L+ E + +PR G D
Sbjct: 340 LYQAGFISYPRTETDVFDPGMDLQGIVTEHTGDPRWGRHAQRILSGELWRQPRPGGHDDK 399
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P R S E D +LY +V +HFL S D
Sbjct: 400 AHPPIHPTRHSLGEHDWSHDKRQLYEFVVRHFLACCSKD 438
>gi|50311957|ref|XP_456010.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645146|emb|CAG98718.1| KLLA0F20724p [Kluyveromyces lactis]
Length = 659
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 124/231 (53%), Gaps = 18/231 (7%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYE--LKLEWERQKLFD-F 64
++ YG CQ PTLGF V RY ++ +F PE+FW + + +G E +K +WER LFD
Sbjct: 219 VISYGTCQFPTLGFVVDRYERVINFIPEQFWHILLSVKDLDGSESKVKFQWERGHLFDRL 278
Query: 65 DVATMFQKLV--MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
V ++++ + +DR +VI +S K K RP L TV L K S + + A
Sbjct: 279 AVLSIYEHCIGTCEDRA-KVIHVSSKDTKKFRPLPLTTVELQKNCSRFFKLSAKKTLDAA 337
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG------YAKPR 176
E+LY QG+ISYPRTE+ +P+ D + L+ + WG YV L+ E Y PR
Sbjct: 338 EKLYQQGYISYPRTETDKFPAKTDLKSLLNKHQGHSEWGPYVTNLMNENSTSTNKYQWPR 397
Query: 177 SGT-DAGDHPPITPMR----SATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
SG D HPPI P+ + T++ + D +Y+YV +HFL S D +
Sbjct: 398 SGNHDDQAHPPIHPILCVDIAKTDNRMTSDEKTVYNYVVKHFLACCSTDAR 448
>gi|449328939|gb|AGE95214.1| DNA topoisomerase III [Encephalitozoon cuniculi]
Length = 621
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 7/216 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VA 67
IL +GPCQ PTLGF V+R + SF PE FWTL ++ G++ + W R +FD + V
Sbjct: 93 ILSFGPCQVPTLGFVVERARERESFVPEIFWTLKFKVMHKGFKDEFTWRRGPVFDRNCVV 152
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
F L +D ++ K+++K RP L TV L K SS M++AE LY
Sbjct: 153 CFFNSLSGED--ARIVSREVKEKTKYRPLPLRTVELQKKCSSYFRLSGHKVMEIAEGLYN 210
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPP 186
+G+ISYPRTE+ + FDF+ L L + G+Y +L+ E + PR+G + H P
Sbjct: 211 RGYISYPRTETDVFDRKFDFKHILGKLCKDSKVGEYASKLMGE-FNHPRNGKNNDMAHLP 269
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P++ + + G D +Y +V + FLG ++ D K
Sbjct: 270 IYPLKEGS-GLSGSDR-DIYDFVSRRFLGCIAKDAK 303
>gi|115386112|ref|XP_001209597.1| DNA topoisomerase III [Aspergillus terreus NIH2624]
gi|114190595|gb|EAU32295.1| DNA topoisomerase III [Aspergillus terreus NIH2624]
Length = 588
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 19/241 (7%)
Query: 1 MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQK 60
+ A+ ++ YG CQ PTLGF V RYL++ +FKPE FW + ++G ++ W+R
Sbjct: 144 LSAALADTLISYGSCQFPTLGFVVDRYLRVKNFKPETFWGIKVMHQRDGIKVNFLWKRVH 203
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM- 119
LFD T+ + + + +V +++K SK RP L TV+L + S L Q M
Sbjct: 204 LFDRAAVTVMMERCLLAKKAKVTKVNQKPTSKWRPLPLTTVDLQMMGSRYLRLDSQKIMK 263
Query: 120 -----------------QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGD 162
Q+AE LYT+GFISYPRTE+ + D + + + WG
Sbjct: 264 VPLRNLILCYLADPCSFQVAEALYTKGFISYPRTETDQFDKGIDLKKLVEKQLPDSNWGQ 323
Query: 163 YVERLLAEGYAKPRSGT-DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
Y LL G+ PR+G + HPPI P+ + L D ++Y +V + FL S D
Sbjct: 324 YARGLLDGGFRTPRAGRHNDRAHPPIHPICWVSPSTLSADEKKVYEFVVRRFLACCSEDA 383
Query: 222 K 222
K
Sbjct: 384 K 384
>gi|343429570|emb|CBQ73143.1| related to DNA topoisomerase III alpha [Sporisorium reilianum SRZ2]
Length = 998
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 116/227 (51%), Gaps = 17/227 (7%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGY--------------ELKL 54
++ YGPCQ PTLGF V RY ++ F PE FW L + ++ ++
Sbjct: 208 VISYGPCQFPTLGFVVDRYNKVVHFVPEPFWLLQVHKTRSMSGGDPSPDDPPDDIRKVVF 267
Query: 55 EWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYG 114
W+R LFD V +F+ L + V ++++KQ K +P L TV L K S L
Sbjct: 268 NWDRVHLFDKRVVQIFRDLCRANPDATVDNVTDKQTKKWKPYPLTTVELQKSGSRLLRLT 327
Query: 115 PQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAK 174
P+ + +AE LY +GF+SYPRTE+ Y FDF ++ + WG+ +RLL + +
Sbjct: 328 PKRILDVAESLYQKGFLSYPRTETDQYDKDFDFTSLIAKQTADGAWGNIAQRLLDGDFER 387
Query: 175 PRSGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
PR+G + HPPI P A + L D R+Y YV + FL + D
Sbjct: 388 PRNGKNNDKAHPPIHPTSHA--NGLTGDDKRVYDYVTRRFLASCWKD 432
>gi|392512614|emb|CAD25295.2| DNA TOPOISOMERASE III [Encephalitozoon cuniculi GB-M1]
Length = 722
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 79/216 (36%), Positives = 117/216 (54%), Gaps = 7/216 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VA 67
IL +GPCQ PTLGF V+R + SF PE FWTL + G++ + W R +FD + V
Sbjct: 194 ILSFGPCQVPTLGFVVERARERESFVPEIFWTLKFKAMHKGFKDEFTWRRGPVFDRNCVV 253
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
F L +D ++ K+++K RP L TV L K SS M++AE LY
Sbjct: 254 CFFNSLSGEDA--RIVSREVKEKTKYRPLPLRTVELQKKCSSYFRLSGHKVMEIAEGLYN 311
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPP 186
+G+ISYPRTE+ + FDF+ L L + G+Y +L+ E + PR+G + H P
Sbjct: 312 RGYISYPRTETDVFDRKFDFKHILGKLCKDSKVGEYASKLMGE-FNHPRNGKNNDMAHLP 370
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P++ + + G D +Y +V + FLG ++ D K
Sbjct: 371 IYPLKEGS-GLSGSDR-DIYDFVSRRFLGCIAKDAK 404
>gi|15237561|ref|NP_201197.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|8777305|dbj|BAA96895.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|169218912|gb|ACA50279.1| topoisomerase 3 alpha [Arabidopsis thaliana]
gi|332010433|gb|AED97816.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 926
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQ PTLGF V+RY +I + +PE+FWT++ W R LFD+ A
Sbjct: 217 VISYGPCQFPTLGFIVERYWEIQAHEPEEFWTINCSHQSEEGLATFNWMRGHLFDYASAV 276
Query: 69 MFQKLVMQDRILEVIDISEKQES-KVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ ++ +++ V+++ +E K P LNT+ L K AS + M++AE LY
Sbjct: 277 ILYEMCVEEPTATVMNVPHPRERFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQ 336
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA-EG--YAKP-RSGTDAGD 183
GFISYPRTE+ ++ S D R + +P WG Y +RLL EG + P G D
Sbjct: 337 AGFISYPRTETDSFSSRTDLRAMVEEQTRHPAWGSYAQRLLEPEGGLWRNPANGGHDDKA 396
Query: 184 HPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + S+ E +D +Y V +H+L VS
Sbjct: 397 HPPIHPTKFSSGESNWSRDHLNVYELVVRHYLACVS 432
>gi|294659706|ref|XP_002770630.1| DEHA2G13376p [Debaryomyces hansenii CBS767]
gi|199434172|emb|CAR65964.1| DEHA2G13376p [Debaryomyces hansenii CBS767]
Length = 624
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 110/213 (51%), Gaps = 2/213 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YG CQ PTLGF V RY ++ SF E FW + + ++ ++ W + LFD T+
Sbjct: 210 YGTCQFPTLGFIVDRYNRVKSFIAEDFWYISVEVKKDNQNVQFSWTKHHLFDRFYVTLLY 269
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ +++ ++ ++++K RP L TV L K SS + A+ AE+LY +GFI
Sbjct: 270 QNCLENSEGKISNLTKKPTKNWRPLPLTTVQLQKDCSSFFKISAKRALDAAEKLYNKGFI 329
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPITPM 190
SYPRTE+ +P + D R + + WG Y LL + + PR G D HPPI P+
Sbjct: 330 SYPRTETDKFPPTMDLRIIIEKQRQDSRWGTYASALLDQNFRTPRGGNNDDKAHPPIHPV 389
Query: 191 RSATEDMLGK-DAWRLYSYVCQHFLGTVSPDCK 222
D L K D ++Y YV + +L S D K
Sbjct: 390 NYVNIDSLDKPDEKKVYEYVVRRYLACCSDDAK 422
>gi|448112756|ref|XP_004202179.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
gi|359465168|emb|CCE88873.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
Length = 620
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 107/213 (50%), Gaps = 2/213 (0%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ 71
YG CQ PTLGF V RY ++ F PEKFW + + ++ W + +FD +
Sbjct: 210 YGTCQFPTLGFVVDRYNRVKRFIPEKFWYISITVKKDNKTETFHWTKNHVFDRLYLALIY 269
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ ++ EV+ + E+ SK RP L TV L K S + A+ AE+LY +GF+
Sbjct: 270 QNCLKYENAEVVQLIERPTSKYRPLPLTTVELQKNCSMYFKMSAKRALDAAEKLYNKGFL 329
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITPM 190
SYPRTE+ +P + D + + N WG Y LL + PR+G+ D HPPI P+
Sbjct: 330 SYPRTETDKFPPTMDLKAVIQKQTQNSTWGQYASELLNGRFRSPRAGSHDDKAHPPIHPV 389
Query: 191 RSATEDML-GKDAWRLYSYVCQHFLGTVSPDCK 222
+ML D ++Y V + FL S D K
Sbjct: 390 NFVKLEMLDNADEKKVYELVVRRFLACCSEDAK 422
>gi|19074185|ref|NP_584791.1| DNA TOPOISOMERASE III [Encephalitozoon cuniculi GB-M1]
Length = 621
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 117/216 (54%), Gaps = 7/216 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VA 67
IL +GPCQ PTLGF V+R + SF PE FWTL + G++ + W R +FD + V
Sbjct: 93 ILSFGPCQVPTLGFVVERARERESFVPEIFWTLKFKAMHKGFKDEFTWRRGPVFDRNCVV 152
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
F L +D ++ K+++K RP L TV L K SS M++AE LY
Sbjct: 153 CFFNSLSGED--ARIVSREVKEKTKYRPLPLRTVELQKKCSSYFRLSGHKVMEIAEGLYN 210
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPP 186
+G+ISYPRTE+ + FDF+ L L + G+Y +L+ E + PR+G + H P
Sbjct: 211 RGYISYPRTETDVFDRKFDFKHILGKLCKDSKVGEYASKLMGE-FNHPRNGKNNDMAHLP 269
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P++ + + G D +Y +V + FLG ++ D K
Sbjct: 270 IYPLKEGS-GLSGSDR-DIYDFVSRRFLGCIAKDAK 303
>gi|403166354|ref|XP_003326221.2| DNA topoisomerase III [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375166208|gb|EFP81802.2| DNA topoisomerase III [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1124
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 3/221 (1%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKL 61
F + ++ YGPCQ PTLGF V +Y ++ +F E FW +H L ++ +++ W+R +L
Sbjct: 259 FHQLADSLISYGPCQFPTLGFVVDQYDKVKAFVAEAFWYIHVVLERDDSKVEFNWKRHRL 318
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
FD+ A + ++ + + V D++ K K +P L TV L K S L P+ + +
Sbjct: 319 FDYHAAFVLHEMCIDEPEATVKDVNIKPTVKWKPLPLTTVELQKSGSRLLHLTPKTVLDI 378
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSGT 179
AE+LY +G +SYPRTE+ + FDF G + N+ WGD+ R L + G+ P++G
Sbjct: 379 AEKLYQKGLVSYPRTETDQFDRDFDFMGLIEKQMNDSQWGDFATRDLKKGGGFHTPQNG- 437
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ D P T +A + L D R+Y ++ + +L S +
Sbjct: 438 EKKDITPSTNHPTAHANNLTADEKRVYDFITRRYLACCSKN 478
>gi|307184421|gb|EFN70830.1| DNA topoisomerase 3-alpha [Camponotus floridanus]
Length = 1044
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 117/214 (54%), Gaps = 4/214 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+++ YG CQ PTLGF V+R+L I FK E +W + +N ++ W R +LF+
Sbjct: 205 MLISYGSCQFPTLGFVVERFLAIDRFKSEPYWKIKVIDDRNEIAVEFRWARVRLFEKMPC 264
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F + ++ V + K +SK RP L+T+ L K S L + M++AE+LYT
Sbjct: 265 QIFLDMCLERPEATVEKVMCKPKSKWRPLPLDTIELEKQGSRKLRLNAKETMRIAEKLYT 324
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
QGFISYPRTE+ +P + + N+ WGD+ LL G PR G + HPP
Sbjct: 325 QGFISYPRTETNIFPKELNLVPLVEQQVNHEAWGDFARGLLESGIT-PRQGKKSDQAHPP 383
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
I P + T+ + G +A R+Y ++ +HFL +S +
Sbjct: 384 IHPTK-YTDSLQGNEA-RVYEFIVRHFLACLSKN 415
>gi|440300574|gb|ELP93021.1| DNA topoisomerase 3-alpha, putative [Entamoeba invadens IP1]
Length = 611
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 118/217 (54%), Gaps = 5/217 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
++ YG CQ PTLGF + RY QI SF EKF+ + + + G E + W+R +LFD
Sbjct: 208 VISYGACQFPTLGFVIDRYYQIKSFTKEKFYKIKCIVKKEGIETEFLWDRNRLFDRIACL 267
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+++ + + + ++ +I +K ++ +P L TV+L K S M +AE+LY
Sbjct: 268 ILYEDALDKVKQAKITEILQKSKTNFKPLPLTTVDLQKSCSKFFKISSNQTMTIAEKLYQ 327
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG--TDAGDHP 185
G ISYPRTE+ YP+ + L AN+ +G+YV++LL PR+G TD HP
Sbjct: 328 SGLISYPRTETNIYPADMNHTKQLEMFANSNTYGEYVKQLLDGKMKPPRNGKATDKS-HP 386
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P + ++G + +Y +V + +L +S D +
Sbjct: 387 PIHPTKLIETGLVGNEKT-IYDFVVRSYLANLSDDAR 422
>gi|356516381|ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycine max]
Length = 913
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 5/215 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L YGPCQ PTLGF V+R+ +I + +PE+FW++ + W R +LFD+ A
Sbjct: 211 VLSYGPCQFPTLGFVVERFWEIQAHEPEEFWSIICSHESKEGTAEFSWMRGRLFDYTCAV 270
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ ++ +++ V +I ++++ K P LNT+ L K AS M++AE LY
Sbjct: 271 IIYEMCVEEPTATVTNIRQQEKPKYPPFPLNTIELQKRASRYFRMSSDHTMKVAEELYQA 330
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPR-SGTDAGDH 184
GFISYPRTE+ ++ D + +P WG Y +RL+ A + PR G D H
Sbjct: 331 GFISYPRTETDSFSPGTDLHTIVQEQQGHPEWGIYAQRLMDPEAGLWRNPRGGGHDDKAH 390
Query: 185 PPITPMRSAT-EDMLGKDAWRLYSYVCQHFLGTVS 218
PPI P + +T E +D +LY V +HFL VS
Sbjct: 391 PPIYPTKFSTGESGWSQDHRKLYELVVRHFLACVS 425
>gi|344301281|gb|EGW31593.1| DNA topoisomerase [Spathaspora passalidarum NRRL Y-27907]
Length = 613
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 109/212 (51%), Gaps = 4/212 (1%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVATMF 70
YG CQ PTLGF V RY ++ SF PE FW + ++++G + W + FD V ++
Sbjct: 208 YGTCQFPTLGFIVDRYKRVKSFVPEAFWFIDVEVMKDGTKSGFNWTKGHFFDRLYVLCLY 267
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
++ + D ++ + K + RP L TV L K S + A+ AE+LY G+
Sbjct: 268 ERCLKHD-FGTIVKLESKPTTNWRPLPLTTVELQKDCSRYFKMSAKRALDAAEKLYNNGY 326
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITP 189
ISYPRTE+ YP + DFRG + WG Y LL+ G+ PR+G+ D HP I P
Sbjct: 327 ISYPRTETDKYPPTMDFRGIFEKQKQDSRWGSYANDLLSSGHQMPRNGSHDDKAHPAIHP 386
Query: 190 MRSATEDML-GKDAWRLYSYVCQHFLGTVSPD 220
+ L +D ++Y YV + FL S D
Sbjct: 387 VNYVNLAALDNQDQRKVYEYVVRRFLACCSKD 418
>gi|396081254|gb|AFN82872.1| DNA topoisomerase II [Encephalitozoon romaleae SJ-2008]
Length = 622
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 5/215 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL +GPCQ PTLGF V+R + SF PE FWTL + E + W R +FD +
Sbjct: 93 ILSFGPCQVPTLGFVVERARERESFVPEMFWTLKFKVRNKKLEDEFTWRRGSVFDKNCVI 152
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
F K ++ ++ +++ K+ K RP L TV L K SS M++AE LY +
Sbjct: 153 YFHKGLVGEKA-KIVLKEMKERIKYRPLPLRTVELQKKCSSYFRLSGHKVMEVAEGLYNR 211
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPPI 187
G+ISYPRTE+ + FDF+ L+ L+ + G+Y ER L + PR+G + H PI
Sbjct: 212 GYISYPRTETDVFDKKFDFKYILNKLSKDSKVGEYAER-LGRVFKYPRNGKNNDMAHLPI 270
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ + G D +Y ++C+ FLG +S D K
Sbjct: 271 YPLKEGV-GLSGSDR-DIYDFICRRFLGCISEDAK 303
>gi|320166036|gb|EFW42935.1| topoisomerase III [Capsaspora owczarzaki ATCC 30864]
Length = 874
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 119/237 (50%), Gaps = 23/237 (9%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV---------------QNGYELK 53
++ YGPCQ PTLGF V RY ++ +F PE+FWT+ + G + K
Sbjct: 156 VISYGPCQFPTLGFIVDRYRRVKAFVPEEFWTIVVACPSPSSESSAAAVAVPQKPGKKGK 215
Query: 54 -------LEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKV 106
W R +LFD + +++++ V+ + + SK RP L+TV L K+
Sbjct: 216 AASDTVPFTWVRGQLFDHPACLVLYEMILERPEATVVSVESRPTSKWRPLPLSTVELQKL 275
Query: 107 ASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVER 166
AS L + ++ AE LYTQGF+SYPRT++ +P + D + AN+P WG +V +
Sbjct: 276 ASVQLRFTSDHTLKTAESLYTQGFLSYPRTDTDVFPETMDLTALANMQANHPEWGSFVHQ 335
Query: 167 LLAEGYAKPRSGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ PR G + + HPPI P + A D +LY V + FL T+S D +
Sbjct: 336 YILARGPNPRKGKNNDEAHPPIHPTKPAPASFQNADEKKLYELVTRSFLATLSSDAQ 392
>gi|327293864|ref|XP_003231628.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
gi|326466256|gb|EGD91709.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
Length = 632
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF +RY ++ +F PE FW++ + G + W R+ LFD +A
Sbjct: 161 LISYGSCQFPTLGFIAERYWRVRNFIPEPFWSIKLMHQKAGARVNFSWARKHLFDRSIAD 220
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + SK +P L T+ L K S G Q +QLAE+LY +
Sbjct: 221 ILYERCLDSQNAQVQKVKTTPTSKWKPLPLTTLELQKCGSRFFGMNSQKVLQLAEKLYQK 280
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSGTDAGD-HPP 186
G+ISYPRTE+ + D RG + A W DY L+ G++ PR+G + HPP
Sbjct: 281 GWISYPRTETDQFDRGMDLRGLVQKQAQGGRWADYATALVEGGGFSWPRNGHNNDKAHPP 340
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ L + R++ ++ + FL S D +
Sbjct: 341 IHPVNFVNPATLSHEEQRVHEFIIRRFLACCSKDAQ 376
>gi|68465569|ref|XP_723146.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|68465862|ref|XP_722999.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|46445011|gb|EAL04282.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|46445167|gb|EAL04437.1| likely DNA topoisomerase III [Candida albicans SC5314]
Length = 629
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 105/212 (49%), Gaps = 3/212 (1%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVATMF 70
YG CQ PTLGF V RY ++ SF PE FW + + + W R FD V ++
Sbjct: 209 YGTCQFPTLGFVVDRYKRVKSFTPEPFWYIEIETRKENKKTIFNWVRGHFFDKMYVVMLY 268
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ + I K++ RP L TV L K + + A+ AERLY G+
Sbjct: 269 DRCCKSGEFGTISKIESKRKPNFRPFPLTTVELQKDCARFFKMSAKTALAAAERLYNLGY 328
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITP 189
+SYPRTE+ + DF+ L +P WG Y +LL EG+ PRSG+ D HPPI P
Sbjct: 329 LSYPRTETDRFAKETDFKSLLEVHKQDPRWGSYTTKLLNEGFETPRSGSHDDKAHPPIHP 388
Query: 190 MRSATEDMLGK-DAWRLYSYVCQHFLGTVSPD 220
++ + D L D ++Y YV + F+ S D
Sbjct: 389 IKYVSLDTLNTLDEKKVYEYVVRRFIACCSKD 420
>gi|238880879|gb|EEQ44517.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 629
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 105/212 (49%), Gaps = 3/212 (1%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVATMF 70
YG CQ PTLGF V RY ++ SF PE FW + + + W R FD V ++
Sbjct: 209 YGTCQFPTLGFVVDRYKRVKSFTPEPFWYIEIETRKENKKTIFNWVRGHFFDKMYVVMLY 268
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ + I K++ RP L TV L K + + A+ AERLY G+
Sbjct: 269 DRCCKSGEFGTISKIESKRKPNFRPFPLTTVELQKDCARFFKMSAKTALAAAERLYNLGY 328
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITP 189
+SYPRTE+ + DF+ L +P WG Y +LL EG+ PRSG+ D HPPI P
Sbjct: 329 LSYPRTETDRFAKETDFKSLLEVHKQDPRWGSYTTKLLNEGFETPRSGSHDDKAHPPIHP 388
Query: 190 MRSATEDMLGK-DAWRLYSYVCQHFLGTVSPD 220
++ + D L D ++Y YV + F+ S D
Sbjct: 389 IKYVSLDTLNTLDEKKVYEYVVRRFIACCSKD 420
>gi|396493373|ref|XP_003844019.1| hypothetical protein LEMA_P016700.1 [Leptosphaeria maculans JN3]
gi|312220599|emb|CBY00540.1| hypothetical protein LEMA_P016700.1 [Leptosphaeria maculans JN3]
Length = 736
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 120/214 (56%), Gaps = 3/214 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
++ YG CQ PTLGF V RYL++ +F PE FW + ++G ++K W R LFD V
Sbjct: 209 LISYGSCQFPTLGFVVDRYLRVRNFVPESFWLIKLAHKKDGIDVKFNWRRGHLFDRMAVI 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F++ ++ + +V+ +++K K +P L TV L K S L Q M++AE+LYT
Sbjct: 269 IIFERCLV-SKTAKVVKMTKKPTKKWKPLPLTTVELQKNGSRFLRMTSQDVMKVAEQLYT 327
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
+G+ISYPRTE+ + D R +S + WG + + L+ G+ +PRSG + HPP
Sbjct: 328 KGWISYPRTETDQFDRGMDLRALVSRQTQDNRWGPFAQNLMNGGFQQPRSGRNNDKAHPP 387
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
I P+ L +D ++Y +V + FL + D
Sbjct: 388 IHPVNYVAATQLNEDERKVYDFVVRRFLACCAED 421
>gi|345568376|gb|EGX51270.1| hypothetical protein AOL_s00054g340 [Arthrobotrys oligospora ATCC
24927]
Length = 652
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 113/218 (51%), Gaps = 5/218 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY+++ +F PE FW+L ++G W+R +LFD
Sbjct: 206 LISYGSCQFPTLGFVVERYMRVKNFVPEPFWSLKLMHTRDGTSTTYNWDRSRLFDRMAVV 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + M V ++ K K +P L TV L K S LG Q M+ AE LYT
Sbjct: 266 LLFESCMSSPDALVKSVARKPTRKYKPLPLTTVELQKQGSRFLGMNSQRVMKAAEGLYTS 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNP---VWGDYVERLLAEGYAKPRSGTDAGD-H 184
GFISYPRTE+ Y + + + + N+ WGDY LL + +PR G + H
Sbjct: 326 GFISYPRTETDQYDQAVNLQALIGKQTNDTGGWGWGDYATGLLDGAFEQPRRGKNNDKAH 385
Query: 185 PPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
PPI P+ +A+ + D ++Y +V +HFL S D
Sbjct: 386 PPIHPVAYAASAALADADQRKVYEFVVRHFLACCSEDA 423
>gi|390341006|ref|XP_782119.2| PREDICTED: DNA topoisomerase 3-alpha [Strongylocentrotus
purpuratus]
Length = 1058
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 121/217 (55%), Gaps = 8/217 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKLEWERQKLFDFDVA 67
++ +G CQ PTLGF V+RY Q+ +F PE F+ + + ++G ++ W+R +LFD
Sbjct: 228 LISFGSCQFPTLGFVVERYKQVEAFIPETFYKIKVTHKTEDGL-VEFHWKRHRLFDQLAC 286
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F ++ ++ + V+D K +SK RP L+TV L K+A+ L Q AM++AE+LYT
Sbjct: 287 QVFYEICTENPLATVVDERSKPKSKWRPLPLDTVELEKLAARKLKISAQQAMKIAEKLYT 346
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG--TDAGDHP 185
QGFISYPRTE+ +P + + + WG + LL +G PR G TD HP
Sbjct: 347 QGFISYPRTETNIFPKELNLVPLIEKQTQDAQWGAFAGNLLQQG-PHPRQGKKTDHA-HP 404
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P + L + ++Y + +HFL S D +
Sbjct: 405 PIHPTK--YNGNLQGNEQKVYELIVRHFLACCSQDAQ 439
>gi|392578148|gb|EIW71276.1| hypothetical protein TREMEDRAFT_73248 [Tremella mesenterica DSM
1558]
Length = 1002
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 125/221 (56%), Gaps = 9/221 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV--QNGYE----LKLEWERQKLF 62
++ YGPCQ PTLGF V +Y ++ SF PE FW ++ + + G E ++ +W R LF
Sbjct: 209 VISYGPCQFPTLGFVVDQYNRVQSFVPEPFWYIYVAIQRQEEGEEEPSTVEFKWRRNHLF 268
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D + A + + +++ + +VI + K +K +P L TV L + S L P+ + +A
Sbjct: 269 DMEAAFVLYERCVEEPMAKVIRVETKPTTKWKPLPLTTVELQQSGSRLLQMTPKSVLDIA 328
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDA 181
E+LY +GF+SYPRTE+ Y S+FDF + ++ VWG + ++LL + +PR+G +
Sbjct: 329 EKLYQKGFLSYPRTETDQYDSAFDFTSLIQKQTHDQVWGGFAQKLLDGEFQRPRNGKKND 388
Query: 182 GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P A+ L + +++ V + FL + S + +
Sbjct: 389 KAHPPIHPTAHASN--LSPEERKVFELVTRRFLASCSSNAE 427
>gi|352682630|ref|YP_004893154.1| topoisomerase (DNA) III alpha [Thermoproteus tenax Kra 1]
gi|350275429|emb|CCC82076.1| topoisomerase (DNA) III alpha [Thermoproteus tenax Kra 1]
Length = 606
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 115/215 (53%), Gaps = 10/215 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L YGPCQTP LG V R L+ +FKPE+++ + + + R + F
Sbjct: 198 LSYGPCQTPVLGLVVSRELERLNFKPEEYYVVKGIVETEAGSFEA---RSRPFKAREEAE 254
Query: 70 FQKLVMQDRILEVIDISEKQESKVRP-CGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + +VI+ + +E++V+P L+TV L + AS L + A+ AE LY +
Sbjct: 255 AAVRAARVSLGKVIE-ARFEETRVKPPAPLDTVELERRASKWLNIRAKAALDTAEELYRR 313
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+T YP + D R L L N +G Y ERLL + R +D HPPI
Sbjct: 314 GYISYPRTETTIYPPTLDLRAVLEELTNTQ-FGQYAERLLRGPISPTRGNSDDRAHPPIY 372
Query: 189 PMRSAT----EDMLGKDAWRLYSYVCQHFLGTVSP 219
P R AT E LG AW+LY +V +HFL T+SP
Sbjct: 373 PTRGATKAEVERALGTRAWKLYEFVVRHFLATLSP 407
>gi|50288605|ref|XP_446732.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526040|emb|CAG59659.1| unnamed protein product [Candida glabrata]
Length = 650
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 123/235 (52%), Gaps = 21/235 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE---LKLEWERQKLFD-F 64
++ YG CQ PTLGF V R+ +I F PE+FW + + E ++ +W+R +LFD F
Sbjct: 222 VISYGTCQFPTLGFVVDRFERIRHFIPEEFWYIQLNIKGEEGESKPIQFQWDRGRLFDRF 281
Query: 65 DVATMFQKLVMQD-RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
V ++++ + QD V DI K SK +P L TV L K + L + ++ AE
Sbjct: 282 SVLSIYEMCLEQDGDSARVSDIKSKPTSKYKPLPLTTVELQKNCARFLRINAKQSLDAAE 341
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALA--NNPV-----WGDYVERLL------AE 170
+LY +GFISYPRTE+ +PS+ D + + A + P W +Y LL
Sbjct: 342 KLYQRGFISYPRTETNVFPSTMDLKSLVEKQAQLDQPAQGRSDWAEYAANLLNGSGSNGN 401
Query: 171 GYAKPRSGT-DAGDHPPITPMRSATEDM--LGKDAWRLYSYVCQHFLGTVSPDCK 222
+ PRSG D HPPI P+ S D+ L R+Y Y+C+HFL + S D K
Sbjct: 402 RFMFPRSGNRDDKAHPPIHPIVSVGRDVTSLNPTEKRVYEYICRHFLASCSEDAK 456
>gi|429961669|gb|ELA41214.1| hypothetical protein VICG_01703 [Vittaforma corneae ATCC 50505]
Length = 791
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 15/223 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELK--------LEWERQK 60
++ +GPCQ PTL F VQR++QI +F EK+++L ++ + K WER+
Sbjct: 195 VISFGPCQIPTLNFVVQRHIQIENFISEKYFSLQNTVLTDQNSKKQNDTIKNVFAWERKH 254
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
LFD + F ++ + + + D + K RP L TV K+ SS M
Sbjct: 255 LFDKNCIIYFYNVLRNSKAV-ISDKKVSNKEKYRPLPLRTVEFQKICSSFYKIDSHRLMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTD 180
+AE+LY G+ISYPRTE+ ++P SF F+ ++ L N+P G+Y + PRSG++
Sbjct: 314 IAEKLYNNGYISYPRTETDSFPKSFGFKNIINKLKNDPRLGEYASNF---AFVYPRSGSN 370
Query: 181 AGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
H PI P++ ++ L D +++ ++ + FLG VS + K
Sbjct: 371 NDQAHSPIYPLKDGSD--LQGDERKIFEFISRRFLGCVSKNAK 411
>gi|221058465|ref|XP_002259878.1| DNA topoisomerase III [Plasmodium knowlesi strain H]
gi|193809951|emb|CAQ41145.1| DNA topoisomerase III, putative [Plasmodium knowlesi strain H]
Length = 661
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 126/264 (47%), Gaps = 45/264 (17%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKLE----- 55
+ T I+ YGPCQ PTLGF V RY+ I +F E +W++ YL ++ + E
Sbjct: 199 LIKTRTNIISYGPCQFPTLGFVVNRYMDIKNFVNEYYWSIKMQYLWEDAEKSGDESDGDS 258
Query: 56 ------------------------------------WERQKLFDFDVATMFQKLVMQDRI 79
W R +L+D + + ++++ +
Sbjct: 259 SAWRKKKTKRKKKNEKEKKNKGKKEDTNQNTIADFTWSRSRLYDHLAVVLIYEELLKNPL 318
Query: 80 LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTEST 139
+ +I + + K RP LNT+ + K+ S + M +AE+LY +GFISYPRTE+
Sbjct: 319 CRITNIYQNEVKKYRPLPLNTLQMTKLVSKHFHISSKQCMNIAEKLYNKGFISYPRTETN 378
Query: 140 AYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSGT-DAGDHPPITPMRSATE-D 196
++P S + R +S L N ++G Y +L + +PR G + HPPI P+++ + D
Sbjct: 379 SFPISMNLRSIVSELKKNNIFGSYANKLCQGNNFKEPRKGKLNDKAHPPIHPVKNMQKTD 438
Query: 197 MLGKDAWRLYSYVCQHFLGTVSPD 220
+ + W +Y ++C+HFL S D
Sbjct: 439 GVEEKEWIIYEFICRHFLAVCSED 462
>gi|443926203|gb|ELU44921.1| DNA topoisomerase type I [Rhizoctonia solani AG-1 IA]
Length = 3005
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 121/219 (55%), Gaps = 7/219 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV----QNGYELKLEWERQKLFDF 64
++ YGPCQ PTLGF V RY Q+ +F PE FW +H +V + E W R +F+F
Sbjct: 2264 LISYGPCQFPTLGFVVSRYEQVQAFVPEPFWYIHLSIVSPDADDEEETAFSWRRHHVFEF 2323
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
DVA + +++ V +++K K +P L TV L K AS L P+ A+ +AE+
Sbjct: 2324 DVALALYEGTVENPTARVTKVTKKPTKKWKPLPLTTVELQKAASRLLHMTPKKALDVAEK 2383
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LY GF+SYPRTE+ + +FDF ++ +P WG + L G+ +PR G +
Sbjct: 2384 LYNDGFLSYPRTETDQFDPAFDFDSLIAKQTVDPDWGGFAAGLQNGGFQRPRDGKKNDKA 2443
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P A +++G +A ++Y YV + FL S D +
Sbjct: 2444 HPPIHPTAHAG-NLVG-EAKKVYEYVARRFLACCSKDAE 2480
>gi|399216452|emb|CCF73140.1| unnamed protein product [Babesia microti strain RI]
Length = 810
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 38/226 (16%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKL 61
F + T ++ YGPCQTPTL FCV+R+ QI SF+P+ ++ + ++++
Sbjct: 199 FGNLNTKLISYGPCQTPTLFFCVERFKQIKSFQPQTYYRV----------------KEEV 242
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
F +L + S K + RP LNTVNLLK+AS L GP A+ +
Sbjct: 243 F----------------VLSAVYSSVK--TIARPTALNTVNLLKMASQQLHLGPHHALSV 284
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSAL--ANNP--VWGDYVERLLAEGYAKPRS 177
AE+LY G+ISYPRTE+ YP +FD G L+ L AN P ++ + +
Sbjct: 285 AEKLYLSGYISYPRTETMTYPKNFDTEGVLNMLRSANFPRDIFTGSKTDSIKFNLNQICR 344
Query: 178 GTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
G DAGDHPPITP+ L D +Y + ++FL ++S DCKY
Sbjct: 345 GKDAGDHPPITPVSVPNPSYLSSDELNIYLLIVRNFLESISVDCKY 390
>gi|126649179|ref|XP_001388262.1| DNA topoisomerase III [Cryptosporidium parvum Iowa II]
gi|126117184|gb|EAZ51284.1| DNA topoisomerase III, putative [Cryptosporidium parvum Iowa II]
Length = 814
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 11/222 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE--------LKLEWERQKL 61
L YG CQ PTLGF V RY +I +F+ E WT+ + YE + EWER KL
Sbjct: 252 LSYGTCQFPTLGFVVSRYKKIINFREEDEWTITLEVKMKIYEGNNKEMSNVIFEWERGKL 311
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
FD + + +++ + +I + K +P LNTV + K+AS L + P + +
Sbjct: 312 FDNLFTFIIYETCIENSNARIKEIVNNKILKRKPLPLNTVEMTKIASDKLKFSPIKCINI 371
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSG-T 179
AE LY +G+ISYPRTE+ ++ S D + + ++G + LL ++ PR G
Sbjct: 372 AENLYRKGYISYPRTETNSFSDSIDISKYIKEQEKSSIFGSFANELLYLNSFSVPRKGCK 431
Query: 180 DAGDHPPITPMRSAT-EDMLGKDAWRLYSYVCQHFLGTVSPD 220
D G HPPI P++ E + W LY + +HFL + S D
Sbjct: 432 DDGSHPPIHPVKCLNKEQASSNEEWLLYELITRHFLSSCSED 473
>gi|67624339|ref|XP_668452.1| DNA topoisomerase III [Cryptosporidium hominis TU502]
gi|54659676|gb|EAL38243.1| DNA topoisomerase III [Cryptosporidium hominis]
Length = 498
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 11/222 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE--------LKLEWERQKL 61
L YG CQ PTLGF V RY +I +F+ E WT+ + YE + EWER KL
Sbjct: 253 LSYGTCQFPTLGFVVSRYKKIINFREEDEWTITLEVKMKIYEGNNKEMSNVIFEWERGKL 312
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
FD + + +++ V +I + K +P LNTV + K+AS L P + +
Sbjct: 313 FDNLFTFIIYETCIENSNARVKEIVNNRILKRKPLPLNTVEMTKIASDKLKISPIKCINI 372
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSG-T 179
AE LY +G+ISYPRTE+ ++ S D + + ++G + LL ++ PR G
Sbjct: 373 AENLYRKGYISYPRTETNSFSDSIDISKYIKEQEKSSIFGSFANELLYLNSFSVPRKGCK 432
Query: 180 DAGDHPPITPMRSAT-EDMLGKDAWRLYSYVCQHFLGTVSPD 220
D G HPPI P++ E + W LY + +HFL + S D
Sbjct: 433 DDGSHPPIHPVKCLNKEQASSNEEWLLYELITRHFLSSCSED 474
>gi|357113918|ref|XP_003558748.1| PREDICTED: DNA topoisomerase 3-alpha [Brachypodium distachyon]
Length = 924
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 116/217 (53%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
++L YGPCQ PTLGF V+R+ +I + +PE+FWT++ + W R LFD+
Sbjct: 217 NMVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSS 276
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + ++ +Q+ + V ++ +++ K P L+T+ L K AS + M++AE LY
Sbjct: 277 AIVIYEMCVQEPMATVQNVRNQEKLKYPPYPLSTLELQKRASRCCRMSSEHTMKVAEELY 336
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKPRSGT-DAG 182
GFISYPRTE+ + + D +PVWG Y +RLL + P +G D
Sbjct: 337 QAGFISYPRTETDNFSPNTDLHAIAHEQVPHPVWGSYAQRLLNPEERLWRNPSNGGHDDK 396
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + +A E +D ++Y V +HFL S
Sbjct: 397 AHPPIHPTKFTAGESNWSQDHHKVYELVVRHFLACCS 433
>gi|330914108|ref|XP_003296497.1| hypothetical protein PTT_06616 [Pyrenophora teres f. teres 0-1]
gi|311331314|gb|EFQ95407.1| hypothetical protein PTT_06616 [Pyrenophora teres f. teres 0-1]
Length = 667
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 9/221 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFW------TLHPYLVQNGYELKLEWERQKLF 62
I+ YG CQ PTLGF V RYL++ +F PE FW T ++ ++K W R LF
Sbjct: 209 IISYGSCQFPTLGFVVDRYLRVRNFVPEPFWYIKVGHTKELEQTKDKVDVKFSWRRGHLF 268
Query: 63 D-FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
D V +F+K ++ + +V+ +++K SK +P L TV L K+ S L Q M++
Sbjct: 269 DRMAVTIIFEKCLLA-KTAKVVKMAKKPTSKWKPLPLTTVELQKMGSRFLRMTSQDVMKV 327
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE LYT+G+ISYPRTE+ + + D R + + WG + + L+ G+ +PR G +
Sbjct: 328 AEELYTKGWISYPRTETDQFDKAIDLRTLVGRQTQDGRWGPFAQNLMNGGFHQPRQGRNN 387
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
HPPI P+ L +Y +V + FL S D
Sbjct: 388 DKAHPPIHPVNYVAPTQLNDRERTVYEFVVRRFLACCSEDA 428
>gi|196002305|ref|XP_002111020.1| hypothetical protein TRIADDRAFT_22834 [Trichoplax adhaerens]
gi|190586971|gb|EDV27024.1| hypothetical protein TRIADDRAFT_22834 [Trichoplax adhaerens]
Length = 625
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 4/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V R+ +I +F E F+ + L + W+R +LF
Sbjct: 207 LISYGSCQFPTLGFVVSRFKEIDAFISEDFYKIKVTLDTEDGVIDFNWKRVRLFYRHACE 266
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ ++ +++ + V + K +SK RP L+TV K+ S L G + AM++AE+LY +
Sbjct: 267 VIHQICLENPLATVTSVVSKPKSKWRPLPLDTVEFEKLVSRKLKIGAKEAMKIAEKLYNR 326
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +PSS + R + + WGD+ + L+ G PR G + HPPI
Sbjct: 327 GFISYPRTETNQFPSSMNLRQLIEYQTESSEWGDFAKSLVERG-PTPRWGKKTDNAHPPI 385
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + + L + R+Y V +HFL S D +
Sbjct: 386 HPTKFT--NTLQGNEKRIYELVVRHFLACCSQDAE 418
>gi|50556688|ref|XP_505752.1| YALI0F22495p [Yarrowia lipolytica]
gi|49651622|emb|CAG78563.1| YALI0F22495p [Yarrowia lipolytica CLIB122]
Length = 620
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 4/224 (1%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKL 61
F + ++ YG CQ PTLGF V RYL +F PE FW + ++ L +R +
Sbjct: 197 FAQLSKSVISYGSCQFPTLGFIVDRYLARENFVPEPFWYMTLKCKVGRKQMALTSKRGHI 256
Query: 62 FDFDVATMFQKLVMQDRIL-EVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
FD A V + +L +V ++S + SK RP L TV LLK+ S +L + ++
Sbjct: 257 FDRASAVALYARVCESGVLPKVTNLSSRPTSKYRPLPLTTVELLKLGSKSLKLPSKTVLK 316
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSGT 179
LAE LY Q FISYPRTE+ + + D L+ N+P WGDY L+ + ++ PR G
Sbjct: 317 LAEELYQQSFISYPRTETDQFSNDIDLMPLLAKQKNSPTWGDYASTLVDGDAFSPPRWGR 376
Query: 180 -DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P+ + + D R+Y + +HF+ S D K
Sbjct: 377 HNDKAHPPIHPI-AHCANFKSNDHKRVYELIARHFMACCSKDAK 419
>gi|156096432|ref|XP_001614250.1| DNA topoisomerase III alpha [Plasmodium vivax Sal-1]
gi|148803124|gb|EDL44523.1| DNA topoisomerase III alpha, putative [Plasmodium vivax]
Length = 666
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 127/269 (47%), Gaps = 50/269 (18%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL-------------------- 41
+ T I+ YGPCQ PTLGF V RY+ I +F E +W++
Sbjct: 199 LIKTETSIISYGPCQFPTLGFVVNRYMDIKNFVNEYYWSIKMQYWCEGGGHSGDESEGGA 258
Query: 42 ------------HPYLVQNGYE---------------LKLEWERQKLFDFDVATMFQKLV 74
+ +++NG + + W R +L+D + + +
Sbjct: 259 SLGRKKRKRNGKNSAVMKNGKKSETMKKMAGASQNTVVDFTWSRLRLYDHLAVVLIYEEL 318
Query: 75 MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYP 134
+++ + + +I E Q K RP LNT+ + K+ S + M +AE+LY +GFISYP
Sbjct: 319 LKNPLCRITNIYENQVKKYRPLPLNTLQMTKLVSRHFHISSKQCMNIAEKLYNRGFISYP 378
Query: 135 RTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSGT-DAGDHPPITPMRS 192
RTE+ +PSS + R ++ L + V+G Y ++L + +PR G + HPPI P+++
Sbjct: 379 RTETNYFPSSMNLRSIVAELKKSKVFGSYAKKLCEGNNFREPRKGRLNDQAHPPIHPVKN 438
Query: 193 ATE-DMLGKDAWRLYSYVCQHFLGTVSPD 220
D + + W +Y +C+HFL S D
Sbjct: 439 MHRTDKVEEREWAIYELICRHFLAVCSDD 467
>gi|303389042|ref|XP_003072754.1| DNA topoisomerase III [Encephalitozoon intestinalis ATCC 50506]
gi|303301896|gb|ADM11394.1| DNA topoisomerase III [Encephalitozoon intestinalis ATCC 50506]
Length = 622
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 115/215 (53%), Gaps = 5/215 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L +GPCQ PTLGF V+R + SF PE FWTL + W R +FD +
Sbjct: 93 VLSFGPCQVPTLGFVVERARERESFVPEMFWTLMFKTKSKKLGDEFTWRRGSVFDKNCVI 152
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
F + + + V+ ++ +K +P L TV L K SS M++AE LY +
Sbjct: 153 CFHRSLSGESARIVLK-EVRERTKYKPLPLRTVELQKKCSSYFKLSGHKVMEIAEGLYNK 211
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPPI 187
G+ISYPRTE+ A+ FDF+ L L + G++ E+L+ G+ PR+G + H PI
Sbjct: 212 GYISYPRTETDAFDRKFDFKYILGKLCKDSKVGEHAEKLIG-GFDYPRNGRNNDMAHSPI 270
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ T + GKD +Y ++C+ FLG +S D K
Sbjct: 271 YPLKEGT-GLSGKDR-DIYDFICRRFLGCISKDAK 303
>gi|358057730|dbj|GAA96385.1| hypothetical protein E5Q_03052 [Mixia osmundae IAM 14324]
Length = 882
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 4/208 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQ P LGF V++Y ++ +F E FW++ L ++G + W R +LFD +VA
Sbjct: 207 VISYGPCQFPALGFVVEQYERMRNFVAEAFWSIQSTLRRDGATVTFNWARNRLFDREVAG 266
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M + + D + + K SK +P L TV L K S L P+ +++A+ LY +
Sbjct: 267 MLHQWCLDDPEATITSVQTKPASKWKPLPLTTVELQKSGSRILRLSPKKVLEIADALYQR 326
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
G +SYPRTE+ + F+F+ + + WG + +RL + +PR G + HPPI
Sbjct: 327 GILSYPRTETDQFDPHFNFQELIEKQTQDTRWGPFAQRLHRGEFERPRGGRKNDHAHPPI 386
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLG 215
P A L D R+Y V + FL
Sbjct: 387 HPTAHAN---LQGDEARVYELVTRRFLA 411
>gi|399218372|emb|CCF75259.1| unnamed protein product [Babesia microti strain RI]
Length = 603
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 114/216 (52%), Gaps = 4/216 (1%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKLEWERQKLFDFD 65
T ++ YGPCQ PTLGF R+ + +F EKFW + + +Q+G L +W+R +LFD +
Sbjct: 203 TKVISYGPCQLPTLGFVADRFFERENFVSEKFWYISVEHKLQSGQTLTFKWDRSRLFDQN 262
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ + + V + +K K P T+ + K + L AM LAE L
Sbjct: 263 AVEIIHEECKRKPEALVCGLDKKLTRKYPPLPATTIQMNKDVTKYLKMSSHRAMSLAEDL 322
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
Y QG+ISYPRTE+ +P + D + ++ ++ + GDY ++ A + + HP
Sbjct: 323 YNQGYISYPRTETNVFPETIDLKSLVNMFTSHSLLGDYASKISNGTIAARKGKCNDNAHP 382
Query: 186 PITPMR--SATEDMLGKDAWRLYSYVCQHFLGTVSP 219
PI P++ AT M K+ + LY Y+ +HFL ++SP
Sbjct: 383 PIHPVKLLEATNAM-SKEHYDLYLYISRHFLASLSP 417
>gi|452822724|gb|EME29741.1| DNA topoisomerase III alpha [Galdieria sulphuraria]
Length = 646
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 121/225 (53%), Gaps = 11/225 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV---QNGYELKLEWERQKLFDFD 65
IL YGPCQ PTLG V R L I +F+P F+ L + +G +L L WER+ LFD
Sbjct: 234 ILSYGPCQFPTLGLVVDRLLTIRAFQPRLFYYLELTISCESSDGDKLVLIWERKHLFDRY 293
Query: 66 VATM-----FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
+ + L+ + + + DI + ++S+ RP L+TV L ++AS + MQ
Sbjct: 294 CCALLYELCYSSLLRSNFQIAIADIKKVRKSRRRPLPLDTVELQRLASRVFFFSSDTTMQ 353
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGT 179
AERLY++G+ISYPRTE+ +PS+ + + N+ WG +V++++ + PR GT
Sbjct: 354 AAERLYSEGYISYPRTETNIFPSTINLSKLVLLQQNDQKWGGFVQKIMEHWIHYSPRQGT 413
Query: 180 -DAGDHPPITPMRSA-TEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
D HPPI P + A E K+ +Y V + FL S D K
Sbjct: 414 KDDKAHPPIHPTKPAPREGFKDKECDAIYELVTRRFLACCSIDAK 458
>gi|302658516|ref|XP_003020961.1| hypothetical protein TRV_04955 [Trichophyton verrucosum HKI 0517]
gi|291184833|gb|EFE40343.1| hypothetical protein TRV_04955 [Trichophyton verrucosum HKI 0517]
Length = 573
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 3/217 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY ++ +F PE FW++ + G + W R LFD A
Sbjct: 160 LISYGSCQFPTLGFIVERYWRVRNFIPEPFWSIKLMHQKAGTWVNFSWARNHLFDRRTAV 219
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + V + SK +P L T+ L K S LG Q +QLAE+LY +
Sbjct: 220 ILYERCLTSQNARVQKVKTTPTSKWKPLPLTTLELQKCGSRFLGMDSQKVLQLAEKLYQK 279
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL--AEGYAKPRSGTDAGD-HP 185
G+ISYPRTE+ + D RG + A W DY L+ G++ PR+G + HP
Sbjct: 280 GWISYPRTETDQFDQGMDLRGLVQKQAQGGRWADYATALVEGGGGFSWPRNGHNNDKAHP 339
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P+ L + R++ +V + FL S D +
Sbjct: 340 PIHPVNFVNPATLSLEEQRVHEFVVRRFLACCSKDAQ 376
>gi|189188224|ref|XP_001930451.1| DNA topoisomerase 3-beta [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972057|gb|EDU39556.1| DNA topoisomerase 3-beta [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 665
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 9/221 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFW------TLHPYLVQNGYELKLEWERQKLF 62
++ YG CQ PTLGF V RYL++ +F PE FW T ++ +++ W R LF
Sbjct: 209 VISYGSCQFPTLGFVVDRYLRVRNFVPEPFWYIKVGHTKELEQTKDKVDVRFSWRRGHLF 268
Query: 63 D-FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
D V +F+K ++ + +V+ +S+K SK +P L TV L K+ S L Q M++
Sbjct: 269 DRMAVTIIFEKCLLA-KTAKVVKMSKKPTSKWKPLPLTTVELQKMGSRFLRMTSQDVMKV 327
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE LYT+G+ISYPRTE+ + + D R + + WG + + L+ G+ +PR G +
Sbjct: 328 AEELYTKGWISYPRTETDQFDRAMDLRTLVGRQTQDGRWGPFAQNLMNGGFHQPRQGRNN 387
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
HPPI P+ L +Y +V + FL S D
Sbjct: 388 DKAHPPIHPVNYVAPTQLNDRERTVYEFVVRRFLACCSEDA 428
>gi|443894350|dbj|GAC71698.1| DNA topoisomerase III alpha [Pseudozyma antarctica T-34]
Length = 1780
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 114/228 (50%), Gaps = 17/228 (7%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFW--TLHPYLVQNG------------YELKL 54
++ YGPCQ PTLGF V RY ++ F PE FW LH +G ++
Sbjct: 1013 VISYGPCQFPTLGFVVDRYNKVIEFVPEPFWLLQLHKTRSMSGGDPAPDDPPDQIRKVVF 1072
Query: 55 EWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYG 114
W+R LFD + + + V +++ KQ K +P L TV L K S L
Sbjct: 1073 NWDRGHLFDKLAVEILRDFCRASPLATVDNVNSKQTKKWKPYPLTTVELQKSGSRLLRLT 1132
Query: 115 PQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAK 174
P+ + +AE LY +GF+SYPRTE+ + FDF ++ + WG +RLL + +
Sbjct: 1133 PKRILDIAESLYQKGFLSYPRTETDQFDKEFDFNALIAKQTADGAWGGVAQRLLDGAFER 1192
Query: 175 PRSGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
PR+G + HPPI P A+ ++ G D R+Y YV + FLG+ D
Sbjct: 1193 PRNGRNNDKAHPPIHPTSHAS-NLTGDDK-RVYDYVTRRFLGSCWTDA 1238
>gi|119871906|ref|YP_929913.1| DNA topoisomerase [Pyrobaculum islandicum DSM 4184]
gi|119673314|gb|ABL87570.1| DNA topoisomerase [Pyrobaculum islandicum DSM 4184]
Length = 604
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 116/223 (52%), Gaps = 18/223 (8%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE---RQKLFDFDV 66
L YGPCQTP LG V R LQ +FKPEK++ + + GY++++ + + + V
Sbjct: 195 LSYGPCQTPVLGIVVTRELQRRNFKPEKYYVIKAVVEIRGYKIEMSADVRFKTRKEAEAV 254
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
AT ++ V++ I I P L TV L + AS LG + + +AE LY
Sbjct: 255 ATTIKRGVVKAAIYRPHYIQP-------PEPLETVELERRASRWLGINSKKTLDIAEELY 307
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
G+ISYPRTE+T YP + + R L L YVE LL G+ R +D G HPP
Sbjct: 308 RAGYISYPRTETTIYPPTLNLREILQELIRGE-HSRYVEELLLRGFRPTRGDSDDGAHPP 366
Query: 187 ITPMRSATED-------MLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P + AT+ +G +AW +Y +V +HFL T+SP +
Sbjct: 367 IYPTKGATKSEIYKTFGKIGDNAWAIYDFVVRHFLATLSPPAQ 409
>gi|222624247|gb|EEE58379.1| hypothetical protein OsJ_09535 [Oryza sativa Japonica Group]
Length = 983
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+IL YGPCQ PTLGF V+R+ +I + +PE+FWT++ + W R LFD+
Sbjct: 316 NIILSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSS 375
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + ++ +++ + V ++ +++ K P L+T+ L K AS + M++AE LY
Sbjct: 376 AVVIYEMCVEEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELY 435
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPRS-GTDAG 182
GFISYPRTE+ + + D + +P WG Y +RLL A + P + G D
Sbjct: 436 QAGFISYPRTETDNFSPNTDLHSIVHEQVAHPNWGTYAQRLLDPEARLWRNPSNGGHDDK 495
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + SA E + +LY V +HFL S
Sbjct: 496 AHPPIHPTKFSAGETNWTDNHKKLYELVVRHFLACCS 532
>gi|353239154|emb|CCA71076.1| related to DNA topoisomerase III alpha [Piriformospora indica DSM
11827]
Length = 632
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 11/223 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL----VQNGY----ELKLEWERQK 60
++ YGPCQ PTLGF V RY Q+ +F PE FW ++ L QNG + +W+R
Sbjct: 172 LVSYGPCQFPTLGFVVSRYEQVKAFVPETFWYIYLALNRPGEQNGRGREDQTVFKWKRGH 231
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
LFDFDVA M ++V++ + V + +K K +P L TV+L K S L + +
Sbjct: 232 LFDFDVALMLYEMVLERPMATVKKVVKKNTKKWKPYPLTTVDLQKSGSRLLRMSAKQILD 291
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
A+ LY +G +SYPRTE+ Y FDF + ++P WG + RL ++KPR G
Sbjct: 292 TADALYQRGILSYPRTETDQYDDQFDFGQYIQKQTSSPEWGAFATRLRQGEFSKPRKGKK 351
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P +A L + ++Y YV + FL + S D +
Sbjct: 352 NDKAHPPIHP--TAYAGNLAGNEKKVYEYVTRRFLASCSKDAE 392
>gi|218192151|gb|EEC74578.1| hypothetical protein OsI_10148 [Oryza sativa Indica Group]
Length = 981
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+IL YGPCQ PTLGF V+R+ +I + +PE+FWT++ + W R LFD+
Sbjct: 316 NIILSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSS 375
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + ++ +++ + V ++ +++ K P L+T+ L K AS + M++AE LY
Sbjct: 376 AVVIYEMCVEEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELY 435
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPRS-GTDAG 182
GFISYPRTE+ + + D + +P WG Y +RLL A + P + G D
Sbjct: 436 QAGFISYPRTETDNFSPNTDLHSIVHEQVAHPNWGTYAQRLLDPEARLWRNPSNGGHDDK 495
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + SA E + +LY V +HFL S
Sbjct: 496 AHPPIHPTKFSAGETNWTDNHKKLYELVVRHFLACCS 532
>gi|20219039|gb|AAM15783.1|AC104428_4 Putative DNA topoisomerase III [Oryza sativa Japonica Group]
gi|108706350|gb|ABF94145.1| DNA topoisomerase family protein, expressed [Oryza sativa Japonica
Group]
Length = 912
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+IL YGPCQ PTLGF V+R+ +I + +PE+FWT++ + W R LFD+
Sbjct: 316 NIILSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSS 375
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + ++ +++ + V ++ +++ K P L+T+ L K AS + M++AE LY
Sbjct: 376 AVVIYEMCVEEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELY 435
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPRS-GTDAG 182
GFISYPRTE+ + + D + +P WG Y +RLL A + P + G D
Sbjct: 436 QAGFISYPRTETDNFSPNTDLHSIVHEQVAHPNWGTYAQRLLDPEARLWRNPSNGGHDDK 495
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + SA E + +LY V +HFL S
Sbjct: 496 AHPPIHPTKFSAGETNWTDNHKKLYELVVRHFLACCS 532
>gi|254565565|ref|XP_002489893.1| DNA Topoisomerase III, conserved protein that functions in a
complex with Sgs1p and Rmi1p [Komagataella pastoris
GS115]
gi|238029689|emb|CAY67612.1| DNA Topoisomerase III, conserved protein that functions in a
complex with Sgs1p and Rmi1p [Komagataella pastoris
GS115]
gi|328350304|emb|CCA36704.1| DNA topoisomerase III [Komagataella pastoris CBS 7435]
Length = 628
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 110/218 (50%), Gaps = 4/218 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RY+++ F PE+FW + + + +L + W R LFD A
Sbjct: 211 LISYGGCQFPTLGFVVDRYMRVKEFVPEEFWYISIEVKKGNRKLPMSWSRPHLFDRLAAM 270
Query: 69 MF--QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ L + E++ I K S +P L TV L K S + + AE+LY
Sbjct: 271 LLYENSLDIAKDEAEIVHIISKPTSNFKPLPLTTVQLQKDCSKFFKLSAKETLDAAEKLY 330
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHP 185
QGFISYPRTE+ + D + LS A +P WG YV+ LL PR+G D HP
Sbjct: 331 NQGFISYPRTETDRFDPKTDLKNLLSKQAESPQWGGYVQELLDGKMRSPRAGKHDDKAHP 390
Query: 186 PITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PI P+ + + ++ +Y YV + F+ S D K
Sbjct: 391 PIHPICYTDFTKLKSRNEQLVYQYVTKRFIACCSDDAK 428
>gi|297721829|ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group]
gi|255674230|dbj|BAH92006.1| Os03g0165000 [Oryza sativa Japonica Group]
Length = 928
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+IL YGPCQ PTLGF V+R+ +I + +PE+FWT++ + W R LFD+
Sbjct: 218 NIILSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSS 277
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + ++ +++ + V ++ +++ K P L+T+ L K AS + M++AE LY
Sbjct: 278 AVVIYEMCVEEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELY 337
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPRS-GTDAG 182
GFISYPRTE+ + + D + +P WG Y +RLL A + P + G D
Sbjct: 338 QAGFISYPRTETDNFSPNTDLHSIVHEQVAHPNWGTYAQRLLDPEARLWRNPSNGGHDDK 397
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + SA E + +LY V +HFL S
Sbjct: 398 AHPPIHPTKFSAGETNWTDNHKKLYELVVRHFLACCS 434
>gi|297793983|ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
lyrata]
gi|297310711|gb|EFH41135.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
lyrata]
Length = 923
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 6/216 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQ PTLGF V+RY +I + +PE+FWT++ W R LFD+ A
Sbjct: 217 VISYGPCQFPTLGFIVERYWEIQAHEPEEFWTINCSHQSEEGLATFNWMRGHLFDYASAV 276
Query: 69 MFQKLVMQDRILEVIDISEKQES-KVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ ++ +++ V+++ +E K P LNT+ L K AS + M++AE LY
Sbjct: 277 ILYEMCVEEPTATVMNVPHPRERFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQ 336
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA-EG--YAKP-RSGTDAGD 183
GFISYPRTE+ ++ S D + +P WG Y +RLL EG + P G D
Sbjct: 337 AGFISYPRTETDSFSSRTDLCAMVEEQRRHPAWGSYAQRLLEPEGGLWRNPGNGGHDDKA 396
Query: 184 HPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + S+ E +D +Y V +H+L VS
Sbjct: 397 HPPIHPTKFSSGESNWSRDHLNVYELVVRHYLACVS 432
>gi|71016361|ref|XP_758895.1| hypothetical protein UM02748.1 [Ustilago maydis 521]
gi|46098326|gb|EAK83559.1| hypothetical protein UM02748.1 [Ustilago maydis 521]
Length = 1325
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 112/227 (49%), Gaps = 17/227 (7%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL--HPYLVQNG------------YELKL 54
++ YGPCQ PTLGF V RY ++ F PE FW L H +G ++
Sbjct: 303 VISYGPCQFPTLGFVVDRYKKVVHFVPEPFWLLQVHKSRSMSGGDPSPDDPPEEIRKVVF 362
Query: 55 EWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYG 114
W+R LFD +F KL + V ++ KQ K +P L TV L K S L
Sbjct: 363 NWDRVHLFDKCAVQIFCKLCRDNPDATVDSVATKQTKKWKPYPLTTVELQKSGSRLLRLT 422
Query: 115 PQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAK 174
P+ + +AE LY +GF+SYPRTE+ Y DF ++ + WG+ +RLL + +
Sbjct: 423 PKRILDVAESLYQKGFLSYPRTETDEYDKDLDFTSLIAKQTADSAWGNVAQRLLDGAFER 482
Query: 175 PRSGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
PR+G + HPPI P A+ L D R+Y YV + FL + D
Sbjct: 483 PRNGKNNDKAHPPIHPTSHAS--GLTGDDKRVYDYVTRRFLASCWTD 527
>gi|126459728|ref|YP_001056006.1| DNA topoisomerase [Pyrobaculum calidifontis JCM 11548]
gi|126249449|gb|ABO08540.1| DNA topoisomerase [Pyrobaculum calidifontis JCM 11548]
Length = 596
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 18/220 (8%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE---RQKLFDFDV 66
L YGPCQTP LG V R L+ +FKPEK++ + + G+ +++ E + +
Sbjct: 194 LSYGPCQTPVLGIVVNRELERINFKPEKYYVIKAVVDIGGHRVEMGSEVRYKTRAEAEAA 253
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A++ ++ V++ + + P L TV L + AS LG + + +AE LY
Sbjct: 254 ASLIKRGVVKAAVYRPHKVEP-------PEPLETVELERRASRWLGINSKKTLDVAEELY 306
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
G+ISYPRTE+T YP S D R L LA G+Y LL G+ R +D G HPP
Sbjct: 307 RAGYISYPRTETTIYPPSLDLREVLQELAKGE-HGEYARGLLKAGFRPTRGDSDDGAHPP 365
Query: 187 ITPMRSATEDML----GKD---AWRLYSYVCQHFLGTVSP 219
I P + AT+D L GK AW +Y +V +HFL T+SP
Sbjct: 366 IYPTKGATKDELYRRFGKAAAYAWPIYDFVVRHFLATLSP 405
>gi|451847298|gb|EMD60606.1| hypothetical protein COCSADRAFT_163916 [Cochliobolus sativus
ND90Pr]
Length = 667
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 108/214 (50%), Gaps = 1/214 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RYL++ +F PE FW + ++ ++K W R LFD
Sbjct: 209 LISYGSCQFPTLGFVVDRYLRVRNFVPEPFWYIKVAHEKDSIDVKFNWRRGHLFDRMAVV 268
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + V +++K K +P L TV L K S L Q M++AE LYT+
Sbjct: 269 LIMERCLLSKTATVTKMAKKPTKKWKPLPLTTVELQKNGSKFLRMTSQDVMKVAEDLYTK 328
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ + D R + + WG + + L+ G+ +PR+G + HPPI
Sbjct: 329 GWISYPRTETDQFDRGMDLRMLVGRQTQDGRWGPFAQNLMNGGFQQPRAGRNNDKAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P+ L +Y +V + FL S D
Sbjct: 389 HPVNYVAPTQLNDRERVVYEFVVRRFLACCSEDA 422
>gi|134116726|ref|XP_773035.1| hypothetical protein CNBJ3110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255655|gb|EAL18388.1| hypothetical protein CNBJ3110 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1059
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 8/220 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-----LKLEWERQKLFD 63
++ YGPCQ PTLGF V++Y ++ +F PE FW + L + + ++ W+R LFD
Sbjct: 209 LISYGPCQFPTLGFVVEQYTRVQAFVPETFWYIFVALEREHEDGEPSTVEFRWKRNHLFD 268
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
D+A + + + V+ + K +K +P L TV L + S L P+ + LAE
Sbjct: 269 LDLAAVLYEQCTVNPQTRVLKVESKPATKWKPLPLTTVELQQSGSRLLHMTPKRILDLAE 328
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
+LY +G +SYPRTE+ Y FDF + + WG Y ++LL + KPR+G +
Sbjct: 329 KLYQKGIVSYPRTETDQYDPKFDFNSLIQKQTLDNQWGAYAQKLLDGAFQKPRNGRKNDK 388
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P +A L D R++ + + FL + S + +
Sbjct: 389 AHPPIHP--TAHAGNLEGDERRVFELITRRFLASCSTNAE 426
>gi|325968322|ref|YP_004244514.1| DNA topoisomerase [Vulcanisaeta moutnovskia 768-28]
gi|323707525|gb|ADY01012.1| DNA topoisomerase [Vulcanisaeta moutnovskia 768-28]
Length = 618
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 113/218 (51%), Gaps = 7/218 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L YGPCQTP L VQR L+ +FKPEK++TLH + +G + L+ + D A
Sbjct: 203 LSYGPCQTPVLNLVVQRALERENFKPEKYYTLHIIVDADGKRIMLDHD-GVFKDRQEAEK 261
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
LV +VI S K++ P L+T+ L + AS L P+ A+ +AE LY G
Sbjct: 262 ILNLVRSMAKAKVIIASYKEDFLGPPVPLDTIELERRASRFLNIRPKAALDIAEELYRHG 321
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITP 189
+ISYPRTE+T YP + + L L + GDY + LL R ++ G HPPI P
Sbjct: 322 YISYPRTETTIYPPTLSLKQVLLELTHGE-HGDYAKTLLGMTIKPTRGNSNDGAHPPIYP 380
Query: 190 MRSATEDML-----GKDAWRLYSYVCQHFLGTVSPDCK 222
R + L + W++Y V +HF+ T+SP +
Sbjct: 381 TRGVSRQELLRYFKNERYWKIYDLVVRHFMATLSPPAR 418
>gi|190347906|gb|EDK40263.2| hypothetical protein PGUG_04361 [Meyerozyma guilliermondii ATCC
6260]
Length = 616
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 110/216 (50%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RY ++ +F E FW + + ++ W +FD
Sbjct: 207 VVSYGTCQFPTLGFVVDRYTRVKNFISEPFWHISIRVKKDDKIAPFTWTTGHVFDHLYVF 266
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + +Q + V I+ K S RP L TV L K SS + A+ AE+LY +
Sbjct: 267 LAYQACLQHKEATVTSITTKPTSNWRPLPLTTVELQKDCSSFFKMSAKRALDAAEKLYNK 326
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPI 187
GF+SYPRTE+ +P++ D R + + + WG+Y LL + +PR+G D HPPI
Sbjct: 327 GFLSYPRTETDKFPATMDLRSVIQTQSQDSQWGNYASELLQGKFRQPRAGNHDDKAHPPI 386
Query: 188 TPMR-SATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ A + D ++Y YV + FL S D +
Sbjct: 387 HPVKYVALSALDSADEKKIYEYVVRRFLACCSDDAR 422
>gi|307596564|ref|YP_003902881.1| DNA topoisomerase [Vulcanisaeta distributa DSM 14429]
gi|307551765|gb|ADN51830.1| DNA topoisomerase [Vulcanisaeta distributa DSM 14429]
Length = 618
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 110/218 (50%), Gaps = 7/218 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L YGPCQTP L VQR L+ +FKPEK++TLH + NG + L + D A
Sbjct: 203 LSYGPCQTPVLNLVVQRALERENFKPEKYYTLHIIVNVNGVRVTLNHD-GTFKDKQEAER 261
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
LV VI + K++ P L+T+ L + AS L P+ A+ +AE LY G
Sbjct: 262 VLSLVRGKARAMVIIANYKEDFIEPPVPLDTIELERRASRFLNIRPKAALDIAEELYRHG 321
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITP 189
+ISYPRTE+T YP + R L L + GDY + LL ++ G HPPI P
Sbjct: 322 YISYPRTETTIYPPTLSLRQILLELTHGE-HGDYAKTLLGMSIKPTHGDSNDGAHPPIYP 380
Query: 190 MRSATEDML-----GKDAWRLYSYVCQHFLGTVSPDCK 222
R T + + W++Y V +HFL T+SP +
Sbjct: 381 TRGVTRQEILRYFKNEKYWKIYDLVVRHFLATLSPPAR 418
>gi|302497864|ref|XP_003010931.1| hypothetical protein ARB_02829 [Arthroderma benhamiae CBS 112371]
gi|291174477|gb|EFE30291.1| hypothetical protein ARB_02829 [Arthroderma benhamiae CBS 112371]
Length = 563
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 109/215 (50%), Gaps = 9/215 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY ++ +F PE FW++ + G + W R LFD A
Sbjct: 160 LISYGSCQFPTLGFVVERYWRVRNFIPEPFWSIKLMHQKAGTWVNFSWARNHLFDRRTAV 219
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + +V + SK +P L T+ L K S LG Q +QLAE+LY +
Sbjct: 220 ILYERCLASQNAQVQKVKTSPASKWKPLPLTTLELQKCGSRFLGMDSQKVLQLAEKLYQK 279
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ + D RG + W DY L+ G++ P +G + HPPI
Sbjct: 280 GWISYPRTETDQFDQGMDLRGLVQKQTQGGRWADYATALVGGGFSWPHNGHNNDKAHPPI 339
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ + + R++ +V + FL S D +
Sbjct: 340 HPVNFSKQ--------RVHEFVVRRFLACCSKDAQ 366
>gi|379003817|ref|YP_005259489.1| Topoisomerase IA [Pyrobaculum oguniense TE7]
gi|375159270|gb|AFA38882.1| Topoisomerase IA [Pyrobaculum oguniense TE7]
Length = 602
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 18/220 (8%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE---RQKLFDFDV 66
L YGPCQTP LG V R LQ +FKPEK++ + + +G+ +++ + + + +
Sbjct: 195 LSYGPCQTPVLGIVVTRELQRRNFKPEKYYVVKALVEIDGHRIEMSADVRFKTRKEAEEA 254
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + V++ + + ++ P L TV L K AS LG + + +AE LY
Sbjct: 255 AATISRGVVKAAVYKPHHVNP-------PVPLETVELEKRASRWLGINSKRTLDIAEELY 307
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
G+ISYPRTE+T YP + D R L LA+ + G Y + L++ G+ R +D HPP
Sbjct: 308 RGGYISYPRTETTIYPPTLDLREVLQELASGHL-GYYADELMSRGFRPTRGDSDDRAHPP 366
Query: 187 ITPMRSATEDMLGK-------DAWRLYSYVCQHFLGTVSP 219
I P R AT+ + K AW +Y +V +HFL T+SP
Sbjct: 367 IYPTRGATKGEIAKTFGKLAPQAWAIYDFVVRHFLATLSP 406
>gi|449016179|dbj|BAM79581.1| DNA topoisomerase III alpha [Cyanidioschyzon merolae strain 10D]
Length = 784
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 126/234 (53%), Gaps = 24/234 (10%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-----VQNGYELKLEWERQKLFD 63
++ YGPCQ PTLG V RY + F+ + FWT+ + +G +++L W+R ++FD
Sbjct: 248 VVSYGPCQFPTLGLVVDRYRERREFQTKPFWTIRMRIQTTGDRASGNQVELCWDRARIFD 307
Query: 64 FDVA-TMFQKLVMQDRI---LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+A +FQ+L R+ L +I ++ + RP L+TV L K AS L M
Sbjct: 308 RFIAYVLFQRLHDAVRLPGALRMIACEKQPAHRSRPLPLSTVELQKEASRKLKLSSAQTM 367
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRG--TLSAL----ANNPVWGDYVERLLAE--- 170
++AE+LY QG+ISYPRTE+ +P+ D RG L AL + + W +RLL
Sbjct: 368 EIAEQLYQQGYISYPRTETDRFPT--DDRGISNLKALITLQSEDQRWSLLAKRLLETDDV 425
Query: 171 ---GYAKPRSGT-DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
G+ PR+G+ D HPPI P +A L DA RLY Y+ + FL + S D
Sbjct: 426 SRGGFKAPRAGSHDDHAHPPIHPTSAAPPGTLSGDAARLYEYIARRFLASCSAD 479
>gi|395645621|ref|ZP_10433481.1| DNA topoisomerase type IA central domain protein [Methanofollis
liminatans DSM 4140]
gi|395442361|gb|EJG07118.1| DNA topoisomerase type IA central domain protein [Methanofollis
liminatans DSM 4140]
Length = 942
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 13/221 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL G Q+PTL R +I SF P+K+W L ++G L+L + D D A
Sbjct: 190 ILSVGRVQSPTLAMIADREKEIESFVPQKYWMLTLDTKKDGSPLELRHTHGRFVDHDDAL 249
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+K + L V ++ E ++ P +T +LL VA+ LG+ AM++AE LY
Sbjct: 250 AARKRTTEP--LTVTEVKEGVKNDRAPTPFDTTSLL-VAAGRLGFSAANAMRVAEDLYMN 306
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGD--YVERLLAEGYAKP---RSGTDAGD 183
GFISYPRT++T YP+S + L L GD +VER + +P R + D
Sbjct: 307 GFISYPRTDNTVYPASLNLDEVLGVLKATAFSGDVAWVER-----HRRPEPTRGKKSSTD 361
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
HPPI P +AT LG++ W+LY V + FL T+SPD +++
Sbjct: 362 HPPIHPTGAATPAQLGEERWKLYELVVRRFLATLSPDARWL 402
>gi|242220541|ref|XP_002476035.1| predicted protein [Postia placenta Mad-698-R]
gi|220724723|gb|EED78746.1| predicted protein [Postia placenta Mad-698-R]
Length = 707
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 109/223 (48%), Gaps = 17/223 (7%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ------NGYELKLEWER 58
V+ ++ YGPCQ PTLGF V RY Q+ SF PE FW ++ L + + E W R
Sbjct: 190 VLKDVISYGPCQFPTLGFVVSRYNQVKSFVPETFWYIYLSLSRPSSTDRDEDETIFTWRR 249
Query: 59 QKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
LFD A + + V+ ++ ++ K K +P L TV+L KV S L P+
Sbjct: 250 GHLFDLHFAMVLYESVLAVPRARIVKVTSKDTKKWKPYPLTTVDLQKVGSRLLRISPKKI 309
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG 178
+ +AE LY QGF+SYPRTE+ + FDF L +P WG +A +
Sbjct: 310 LDIAEHLYQQGFLSYPRTETDRFDPQFDFMTLLQKQTVDPAWGP---------FAHMQGK 360
Query: 179 TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
D HPPI P +A L D R+Y Y+ + FL S D
Sbjct: 361 KDDKAHPPIHP--TAYAGNLAGDEKRVYEYITRRFLACCSKDA 401
>gi|145591572|ref|YP_001153574.1| DNA topoisomerase [Pyrobaculum arsenaticum DSM 13514]
gi|145283340|gb|ABP50922.1| DNA topoisomerase [Pyrobaculum arsenaticum DSM 13514]
Length = 602
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 18/220 (8%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE---RQKLFDFDV 66
L YGPCQTP LG V R LQ +FKPEK++ + + G+ +++ + + + +
Sbjct: 195 LSYGPCQTPVLGIVVTRELQRRNFKPEKYYVVKALVEIGGHRIEMSADVRFKTRKEAEEA 254
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + V++ + ++ P L TV L + AS LG + + +AE LY
Sbjct: 255 AATINRGVVKAAVYRPHHVNP-------PVPLETVELERRASRWLGINSKRTLDIAEELY 307
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
G+ISYPRTE+T YP + D R L LA+ + G Y + L+ G+ R +D HPP
Sbjct: 308 RAGYISYPRTETTIYPPTLDLREVLQELASGHL-GSYADELMRRGFRPTRGDSDDRAHPP 366
Query: 187 ITPMRSATEDMLGK-------DAWRLYSYVCQHFLGTVSP 219
I P R+AT+ + K AW +Y +V +HFL T+SP
Sbjct: 367 IYPTRAATKGEVAKAFGKLAPQAWAIYDFVVRHFLATLSP 406
>gi|146415324|ref|XP_001483632.1| hypothetical protein PGUG_04361 [Meyerozyma guilliermondii ATCC
6260]
Length = 616
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 110/216 (50%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V RY ++ +F E FW + + ++ W +FD
Sbjct: 207 VVSYGTCQFPTLGFVVDRYTRVKNFILEPFWHISIRVKKDDKIAPFTWTTGHVFDHLYVF 266
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + +Q + V I+ K S RP L TV L K SS + A+ AE+LY +
Sbjct: 267 LAYQACLQHKEATVTSITTKPTSNWRPLPLTTVELQKDCSSFFKMSAKRALDAAEKLYNK 326
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPI 187
GF+SYPRTE+ +P++ D R + + + WG+Y LL + +PR+G D HPPI
Sbjct: 327 GFLSYPRTETDKFPATMDLRSVIQTQSQDSQWGNYASELLQGKFRQPRAGNHDDKAHPPI 386
Query: 188 TPMR-SATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ A + D ++Y YV + FL S D +
Sbjct: 387 HPVKYVALSALDSADEKKIYEYVVRRFLACCSDDAR 422
>gi|254579749|ref|XP_002495860.1| ZYRO0C04642p [Zygosaccharomyces rouxii]
gi|238938751|emb|CAR26927.1| ZYRO0C04642p [Zygosaccharomyces rouxii]
Length = 650
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 122/233 (52%), Gaps = 17/233 (7%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFD 63
V+ ++ YG CQ PTLGF V R+ +I +F E+FW + + +NG WER LFD
Sbjct: 224 VSTVISYGTCQFPTLGFVVDRFERIRNFIAEEFWYIQLEIESSENGM-TAFAWERGNLFD 282
Query: 64 -FDVATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
V T ++ + + +V+D+ + SK RP L TV L K + L + ++
Sbjct: 283 RLTVFTFYENCIELAGNRAKVVDVKSRPTSKYRPLPLTTVELQKNCARFLKMNAKQSLDA 342
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALAN-----NPVWGDYVERLLAEG----- 171
AE+LY +GFISYPRTE+ +P + + R + A VW +Y E+L++
Sbjct: 343 AEKLYQKGFISYPRTETDTFPKNMNLRSLIEKQAQLGQEGRSVWANYAEQLISSSPGSNK 402
Query: 172 YAKPRSGT-DAGDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ PRSG+ D HPPI P+ S + L + ++Y YV +HFL S D K
Sbjct: 403 FKTPRSGSHDDKAHPPIHPIISLGRQANLSRVEHQVYEYVTRHFLACCSEDAK 455
>gi|294495508|ref|YP_003542001.1| DNA topoisomerase [Methanohalophilus mahii DSM 5219]
gi|292666507|gb|ADE36356.1| DNA topoisomerase [Methanohalophilus mahii DSM 5219]
Length = 776
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 117/217 (53%), Gaps = 11/217 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA- 67
IL GPCQTPT GF +R I F+PE FW + E + + + D ++A
Sbjct: 193 ILSIGPCQTPTCGFVYEREKTIRDFQPEDFWKIEAVFQAGSSEFEGVHRKGNIRDVELAK 252
Query: 68 TMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+++KL ++ I+ ++I EKQ + P LNT LK AS L P+ A+++AE+LY
Sbjct: 253 KIYEKLQGTREAIVFRLNIKEKQINPPYP--LNTNEFLKRASKFLDISPEKALEIAEQLY 310
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHP 185
GFISYPRTE+ YP DF+ L L + + E LL + PR+G D DHP
Sbjct: 311 LAGFISYPRTETNRYPEDHDFKSMLKNLLRIDEYAPFAENLLKTTVS-PRNGKKDGHDHP 369
Query: 186 PITPMRSATEDMLGK-----DAWRLYSYVCQHFLGTV 217
PI P+++ +E + ++W++Y + +HFL +
Sbjct: 370 PIHPIKAVSEKQIKNAVKLDNSWKVYDLIVRHFLANL 406
>gi|198473327|ref|XP_001356254.2| GA10090 [Drosophila pseudoobscura pseudoobscura]
gi|198139406|gb|EAL33317.2| GA10090 [Drosophila pseudoobscura pseudoobscura]
Length = 1178
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 6/219 (2%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF +RY +I +F E FW + ++ W R +LFD
Sbjct: 201 IADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIRVLHTIEDLTVEFNWARNRLFDK 260
Query: 65 DVATMFQKLVMQDR--ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
+ + L + + V ++ K + K RP L+TV + K+ S L + M +A
Sbjct: 261 EACENYHLLCLSEPEPRATVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIA 320
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
E+LY++GFISYPRTE+ + F+ + A + WG + R+L G PR+G+ +
Sbjct: 321 EKLYSKGFISYPRTETNQFSKEFELAPLVQLQAGHSDWGAFARRVLDWG-PNPRNGSKSD 379
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P +SA +++ G +A R+Y V +HFL VS D
Sbjct: 380 QAHPPIHPTKSA-DNLQGNEA-RVYELVVRHFLACVSKD 416
>gi|224013088|ref|XP_002295196.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969158|gb|EED87500.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1417
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 105/189 (55%), Gaps = 6/189 (3%)
Query: 3 VAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLF 62
+++V L+ TPTLGFCVQR++++ +FKPE +W + ++ G + W+ + F
Sbjct: 771 ISIVQCCLMD---HTPTLGFCVQRHVEMETFKPEPYWLMDLGVMNAGTMCRAVWDSGRSF 827
Query: 63 DFD-VATMFQKLVMQDRIL--EVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+ + V + K + +V + K + RP +NTV +LK S LG GP A+
Sbjct: 828 NRNKVDDLVAKCKNSSSAVFAKVDAVVTKNRHQGRPVPMNTVAMLKACSKVLGIGPHAAL 887
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
+AERLY G++SYPRTEST YP SFD GTL + + WG YV LL G + G
Sbjct: 888 SIAERLYLSGYLSYPRTESTKYPKSFDIVGTLKEQSYDNRWGQYVGELLKSGPNVGKGGA 947
Query: 180 DAGDHPPIT 188
D GDH I+
Sbjct: 948 DMGDHLTIS 956
>gi|388853372|emb|CCF52992.1| related to DNA topoisomerase III alpha [Ustilago hordei]
Length = 986
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 111/230 (48%), Gaps = 17/230 (7%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGY--------------E 51
+ ++ YGPCQ PTLGF V RY ++ F E FW L ++ +
Sbjct: 205 ASQVISYGPCQFPTLGFVVDRYNKVVHFVAEAFWYLQVDKTRSMSGGDPSPDDPPDQICK 264
Query: 52 LKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSAL 111
+ W+R LFD +F+ L R V +++ KQ K +P L TV L K S L
Sbjct: 265 VTFNWDRVHLFDKKAVEVFRDLCRAKREGTVENVTNKQTKKWKPYPLTTVELQKSGSRLL 324
Query: 112 GYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG 171
P+ + +AE LY +GF+SYPRTE+ Y FDF ++ + W +RLL
Sbjct: 325 RLAPKRILDIAESLYQKGFLSYPRTETDQYDKDFDFNTLIAKQTADGAWSGIAQRLLDGA 384
Query: 172 YAKPRSGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ +PR+G + HPPI P +A L D R+Y YV + FL + D
Sbjct: 385 FERPRNGKNNDKAHPPIHP--TAHAGGLSGDDKRVYDYVTRRFLASCWSD 432
>gi|403222791|dbj|BAM40922.1| DNA topoisomerase III [Theileria orientalis strain Shintoku]
Length = 619
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 14/223 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD----- 63
IL YG CQ PTLGF V+RYLQI +F+ E +WT++ + + W R+KLFD
Sbjct: 193 ILSYGTCQLPTLGFVVERYLQIENFQREPYWTINVNVTHESIPVTFLWSRKKLFDEYNRA 252
Query: 64 ------FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQM 117
V T+++ + R + + I +K+ K P L+T+ + K S L
Sbjct: 253 LITMCRLAVLTLYEVCLENPRGV-IRKIIKKEVKKHPPLPLDTIEMNKDVSKFLRISSHK 311
Query: 118 AMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRS 177
MQLAE LY +G+ISYPRTE+ +PSS + + + L+ + Y LL G+ +P
Sbjct: 312 CMQLAEALYNKGYISYPRTETNCFPSSINVKTIIRMLSTVQEFSGYANTLLNGGFREPIK 371
Query: 178 GTDAGD-HPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVS 218
G + HPPI P++ + + ++ W+LY Y+ + FL S
Sbjct: 372 GRKNDEAHPPIHPVKCLSRYEADSEEHWQLYEYIARRFLACCS 414
>gi|195164694|ref|XP_002023181.1| GL21219 [Drosophila persimilis]
gi|194105266|gb|EDW27309.1| GL21219 [Drosophila persimilis]
Length = 1178
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 6/219 (2%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF +RY +I +F E FW + ++ W R +LFD
Sbjct: 201 IADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIRVLHTIEDLTVEFNWARNRLFDK 260
Query: 65 DVATMFQKLVMQDR--ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
+ + L + + V ++ K + K RP L+TV + K+ S L + M +A
Sbjct: 261 EACENYLLLCLSEPEPRATVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIA 320
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
E+LY++GFISYPRTE+ + F+ + A + WG + +R+L G PR+G+ +
Sbjct: 321 EKLYSKGFISYPRTETNQFSKEFELAPLVQLQAGHSDWGAFAQRVLDWG-PNPRNGSKSD 379
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P +SA +++ G +A R+Y V +HFL VS D
Sbjct: 380 QAHPPIHPTKSA-DNLQGNEA-RVYELVVRHFLACVSKD 416
>gi|365992220|ref|XP_003672938.1| hypothetical protein NDAI_0L02110 [Naumovozyma dairenensis CBS 421]
gi|410730103|ref|XP_003671229.2| hypothetical protein NDAI_0G02110 [Naumovozyma dairenensis CBS 421]
gi|401780049|emb|CCD25986.2| hypothetical protein NDAI_0G02110 [Naumovozyma dairenensis CBS 421]
Length = 656
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 118/233 (50%), Gaps = 20/233 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV--QNGYELKLEWERQKLFDFDV 66
I+ YG CQ PTLGF V RY +I F E+FW + + ++G +W+R LFD
Sbjct: 230 IISYGACQFPTLGFVVDRYERIKHFVSEEFWYIQLVIKDPESGASTTFQWDRGHLFDRLS 289
Query: 67 ATMFQKLVMQ---DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
F + ++ D+ +V+D+ K SK RP L TV L + + L + ++ AE
Sbjct: 290 VLAFYETCLETAGDKA-KVVDLISKPTSKYRPLPLTTVELQRNCARFLRLNAKKSLAAAE 348
Query: 124 RLYTQGFISYPRTESTAYPSSFDF------RGTLSALANNPVWGDYVERLLAEGYAK--- 174
+LY +GF+SYPRTE+ +P + D R L N W Y E LL++ +
Sbjct: 349 KLYQKGFVSYPRTETDIFPQAMDLQSLVRNRAQLDQSNNRTAWASYAEGLLSDDASNTNK 408
Query: 175 ---PRSGT-DAGDHPPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVSPDCK 222
PRSGT D HPPI P+ S + L D R+Y Y+ +HFL S D K
Sbjct: 409 FRFPRSGTHDDKAHPPIHPVVSVGPNANLTPDEKRVYEYIVRHFLACCSEDAK 461
>gi|255072381|ref|XP_002499865.1| predicted protein [Micromonas sp. RCC299]
gi|226515127|gb|ACO61123.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 639
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 115/224 (51%), Gaps = 17/224 (7%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKL---EWERQKLFDF 64
I+ YGPCQ PTLGF VQR I + PE FW + + V G E + EW R +LFD
Sbjct: 217 IVSYGPCQFPTLGFIVQRKWDIDAHVPENFWKIKLSHAVGQGREASIAEFEWSRDRLFDE 276
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+AT V V + K P LNT+ + K + A+ P+ M+LAE
Sbjct: 277 HLATALFAAVRGAGQAVVTREGGTESKKWPPHPLNTLEMQKRLNRAIRVSPEQIMKLAEE 336
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAK-PRSGTDAGD 183
LY GFISYPRTE+ +P FD+R ++ L +P +G + L + + P G D
Sbjct: 337 LYQAGFISYPRTETDKFPHDFDYRTSIEQLHPHPKFGFHAINLSGGRFRQPPGGGHDDKA 396
Query: 184 HPPITPMR-SATEDMLGKDAWR--------LYSYVCQHFLGTVS 218
HPPI P + ++T+D +WR +Y +VC+HFL + S
Sbjct: 397 HPPIYPTKLASTQDYA---SWRNRNSRLIDVYEFVCRHFLASCS 437
>gi|303310917|ref|XP_003065470.1| DNA topoisomerase family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105132|gb|EER23325.1| DNA topoisomerase family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 618
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 3/224 (1%)
Query: 2 FVAVVTLIL--IYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
F ++TL L + G + + + Y ++ +FKPE +W++ ++G + W R
Sbjct: 190 FTRLLTLQLGALGGALSERLISYGKKTYFRVKNFKPEPYWSIKVTHARDGKTVNFTWSRG 249
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
LFD M + + + +V +++K K RP L TV+L + S L Q M
Sbjct: 250 NLFDRAAVVMIFERCLTAKTAKVTKVNKKPTKKWRPLPLTTVDLQMMGSKFLRMDSQKVM 309
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE LYT+GFISYPRTE+ + D + + + VWG Y + L+A G+ +PRSG
Sbjct: 310 KVAESLYTKGFISYPRTETDQFDKGIDLKKLIEKQIQDGVWGQYSQGLMAGGFKQPRSGR 369
Query: 180 -DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P+ +L D R+Y +V + FL S D K
Sbjct: 370 HNDQAHPPIHPVTYVAPSVLTADERRVYEFVVRRFLACCSDDAK 413
>gi|374327011|ref|YP_005085211.1| DNA topoisomerase [Pyrobaculum sp. 1860]
gi|356642280|gb|AET32959.1| DNA topoisomerase (topA) [Pyrobaculum sp. 1860]
Length = 598
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 112/220 (50%), Gaps = 18/220 (8%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE---RQKLFDFDV 66
L YGPCQTP LG V R LQ +FKPEK++ L + G+ +++ + + +
Sbjct: 195 LSYGPCQTPVLGMVVTRELQRRNFKPEKYYILKALVEVEGHRIEMSSDVRYKSREEGERA 254
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + V++ + + ++ P L TV L + AS LG + + +AE LY
Sbjct: 255 AASVKHGVVKTALYKPHEVEP-------PEPLETVELERRASRWLGINAKKTLDIAEELY 307
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
G+ISYPRTE+T YP + D R L LA G Y E LL + R +D G HPP
Sbjct: 308 RAGYISYPRTETTIYPQTLDLREILRDLAETE-HGPYAEELLRRSFKPTRGDSDDGAHPP 366
Query: 187 ITPMRSATEDML-------GKDAWRLYSYVCQHFLGTVSP 219
I P + AT+ + G AW +Y +V +HFL T+SP
Sbjct: 367 IYPTKGATKAEIMKIFGKAGAQAWAIYDFVVRHFLATLSP 406
>gi|194761190|ref|XP_001962812.1| GF14242 [Drosophila ananassae]
gi|190616509|gb|EDV32033.1| GF14242 [Drosophila ananassae]
Length = 1209
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 9/225 (4%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F A + LI YG CQ PTLGF +RY ++ +F E FW + + ++ W R
Sbjct: 196 LFPAKIADKLISYGSCQIPTLGFVAERYKEVEAFVSEPFWKVKVIHTIDDLTVEFNWARN 255
Query: 60 KLFDFDVATMFQKLVMQ---DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQ 116
+LFD + + L ++ R L V ++ K + K RP ++TV + K+ S L +
Sbjct: 256 RLFDKEACENYLLLCLEVPAPRAL-VESVTVKPKHKWRPTPMDTVEMEKLGSRKLKLSAK 314
Query: 117 MAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
M +AE+LY++GFISYPRTE+ + F+ + N WG + +R++ G PR
Sbjct: 315 ETMTIAEKLYSKGFISYPRTETNQFSKEFELLPLVEMQTGNAAWGPFAQRVVEWG-PNPR 373
Query: 177 SGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+G + HPPI P ++A +++ G +A R+Y V +HFL VS D
Sbjct: 374 NGNKSDQAHPPIHPTKAA-DNLQGNEA-RVYELVVRHFLACVSKD 416
>gi|406606993|emb|CCH41611.1| DNA topoisomerase III [Wickerhamomyces ciferrii]
Length = 623
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 19/225 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PT+GF V R+ +I +F PE+FW L V+ G + W++ +LFD A
Sbjct: 207 VVSYGSCQFPTVGFVVDRFKRIKNFVPEEFWYLD-ISVRKGKITRFTWKKNRLFDRLAAV 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + M++ + +I +K +P L TV L K S + ++++AE+LY +
Sbjct: 266 VLYQKCMENEKGTITNIKSSPSTKWKPLPLTTVELQKGCSMYFKMSAKESLEVAEKLYQK 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSGTDAGD-HPP 186
GF+SYPRTE+ YP + D + + + VWG+Y LL + + PR G + HPP
Sbjct: 326 GFLSYPRTETNVYPKTMDLKALIDKQRPDQVWGEYATGLLDGDLFDTPRQGKKNDEAHPP 385
Query: 187 ITPMR---------SATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+ +ATE ++Y +V +HFL T S + K
Sbjct: 386 IHPVNYLNIHSPDATATEK-------KVYEFVVRHFLATCSKNAK 423
>gi|154150402|ref|YP_001404020.1| DNA topoisomerase [Methanoregula boonei 6A8]
gi|153998954|gb|ABS55377.1| DNA topoisomerase [Methanoregula boonei 6A8]
Length = 942
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 11/217 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL G Q+PTL V R +I F PEK+W L + G +++ + D A
Sbjct: 190 ILSVGRVQSPTLSMIVDREKEIEKFVPEKYWQLGLLTEKAGEQIEARHTNGRFKDQKAAE 249
Query: 69 MFQKLVMQDRILE---VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ +DR E V ++ E + P +T + VA++ LG+ AM++AE L
Sbjct: 250 L-----ARDRTKEPLVVTEVREGTKQDRSPSPFDTTTYI-VAAARLGFSAANAMRIAEEL 303
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DH 184
Y G+ISYPRT++T YP+S D G L+ + N+P D V+ +++ A+P G + DH
Sbjct: 304 YMNGYISYPRTDNTVYPASLDLNGVLATIRNSPFTKD-VDWIISHRRAEPTRGKKSSTDH 362
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
PPI P AT + +G DA+R+Y V + FL T++PD
Sbjct: 363 PPIYPTGVATREGIGDDAFRIYELVLRRFLATLAPDA 399
>gi|195031343|ref|XP_001988332.1| GH11108 [Drosophila grimshawi]
gi|193904332|gb|EDW03199.1| GH11108 [Drosophila grimshawi]
Length = 1269
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 6/219 (2%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF +RY +I +F E FW + ++ W R +LFD
Sbjct: 201 IARNLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIRVLHTIEDLTVEFNWARNRLFDK 260
Query: 65 DVATMFQKLVMQDR--ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
+ + L M + V ++ K + K RP L+TV + K+ S L + M +A
Sbjct: 261 EACENYLLLCMSEPEPRATVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIA 320
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
E+LY+QG ISYPRTE+ + F+ ++ ++ WG + +R+L G PR+GT +
Sbjct: 321 EKLYSQGIISYPRTETNQFSKEFELAPIVAQQTSHEAWGAFAQRVLEWG-PNPRNGTKSD 379
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P++ T + G +A R+Y V +HFL VS D
Sbjct: 380 QAHPPIHPIKLVT-GLQGNEA-RVYELVVRHFLACVSKD 416
>gi|164657941|ref|XP_001730096.1| hypothetical protein MGL_2478 [Malassezia globosa CBS 7966]
gi|159103991|gb|EDP42882.1| hypothetical protein MGL_2478 [Malassezia globosa CBS 7966]
Length = 694
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWT--LHPYLVQNGYELKLE----WERQK 60
+++L YGPCQ PTLGF V Y ++ +F PE+FW+ L + Q G + + W+R
Sbjct: 112 SMLLSYGPCQFPTLGFVVDHYKRVETFVPEEFWSIDLRHAVSQQGQDRRTNVEFLWDRNH 171
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
LFD + + K EV + + K +P L TV L K S G P+ +
Sbjct: 172 LFDKRIVHILHKRCKDAEEAEVKQVVRRTTWKRKPTPLTTVELQKNLSRLSGMAPKRILD 231
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--------- 171
+AE LY +G +SYPRTE+ Y FDF L ++ +WG + + A
Sbjct: 232 VAESLYQRGLLSYPRTETNQYDKDFDFVSLLDKQRSDCIWGAHATEIFASATGNGSDSLH 291
Query: 172 ---YAKPRSG-TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
Y +PR G + HPPI P A + L D ++Y YV + FL + + D
Sbjct: 292 SLQYERPRDGQKNDKAHPPIHPTAHAND--LKADEKQVYDYVTRRFLASCTTD 342
>gi|432331507|ref|YP_007249650.1| topoisomerase IA [Methanoregula formicicum SMSP]
gi|432138216|gb|AGB03143.1| topoisomerase IA [Methanoregula formicicum SMSP]
Length = 942
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 113/216 (52%), Gaps = 5/216 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL G QTPTL V R +I +F PEK+W L + G ++ + + A
Sbjct: 190 ILSVGRVQTPTLSMIVDREKEIVAFVPEKYWQLALDFEKRGEVIEARHTNGRFHEKAAAE 249
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +++ + KQ+ P +T + VA++ LG AM++AE LY
Sbjct: 250 QARDRTQSPLVVKEVRTGTKQDRA--PSPFDTTTYI-VAAARLGLSAANAMRIAEDLYMN 306
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPPI 187
GFISYPRT++T YP S D G L+ L +P D VE ++A P G + DHPPI
Sbjct: 307 GFISYPRTDNTVYPPSLDISGILNTLKTSPFKKD-VEWVIAHRRPVPTRGKKSSTDHPPI 365
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P +AT +MLG DA+R+Y V + FL T++PD ++
Sbjct: 366 HPTGAATREMLGDDAFRVYELVLRRFLATLAPDAQW 401
>gi|168067139|ref|XP_001785482.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662889|gb|EDQ49689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 915
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 111/224 (49%), Gaps = 13/224 (5%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L+L YGPCQ PTLGF V+RY QI + E FW + + + W R +LFD A
Sbjct: 212 LVLSYGPCQFPTLGFVVERYWQIQAHVAEDFWAIKCFHKAEDGSAEFSWARGRLFDELAA 271
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYG--------PQMAM 119
+ ++ M+ V ++ +++ K P LNTV L K AS G +
Sbjct: 272 FIIYEMCMERPTATVCQVTGQEKRKFPPVPLNTVELQKRASRYFRMGYILNYEAVRSQFL 331
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKP- 175
Q+AE LY GFISYPRTE+ + + D + ++ + WG Y +RLL + + +P
Sbjct: 332 QVAEELYQAGFISYPRTETDKFSENQDLQSIVNEQIGHSAWGQYAQRLLDPQQQLWKQPG 391
Query: 176 RSGTDAGDHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
G D HPPI P R S E D R+Y V +HFL VS
Sbjct: 392 DGGHDDKAHPPIHPTRFSEGEGNWTNDHARIYELVVRHFLACVS 435
>gi|300706240|ref|XP_002995407.1| hypothetical protein NCER_101713 [Nosema ceranae BRL01]
gi|239604490|gb|EEQ81736.1| hypothetical protein NCER_101713 [Nosema ceranae BRL01]
Length = 805
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 118/215 (54%), Gaps = 9/215 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ +GPCQ PTLGF ++R+ QI FK E F++L + + + W+R +FD + T
Sbjct: 195 VISFGPCQIPTLGFVIERFFQIEKFKEEDFYSLEINIKSDTWT----WKRGNIFDKNCVT 250
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
F +++ +L +I K++P L TV L K+ SS M++AE LY +
Sbjct: 251 YFYNMLINYNLL-IIKKEVSSVFKMKPLPLRTVELQKLCSSIFKISSHKIMEIAESLYNK 309
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPPI 187
G+ISYPRTE+ A+P +F+++ L + ++ + D + + PRSG + H PI
Sbjct: 310 GYISYPRTETDAFPKNFNYKNILDKIISDSTYTDIILS-IKNNINLPRSGKNNDMAHSPI 368
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ D+ G D +LY ++ + FLG++ D K
Sbjct: 369 YPLKGGG-DLTGLDR-KLYDFITRRFLGSLCADAK 401
>gi|218201738|gb|EEC84165.1| hypothetical protein OsI_30540 [Oryza sativa Indica Group]
Length = 897
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 115/217 (52%), Gaps = 5/217 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+IL YGPCQ PTLGF V+R+ +I + +PE+FWT++ + W R LFD+
Sbjct: 218 NIILSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSS 277
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + ++ +++ + V ++ +++ K P L+T+ L K AS + M++AE LY
Sbjct: 278 AVVIYEMCVKEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELY 337
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPRS-GTDAG 182
GFISYPRTE+ + + D + +P G Y +RLL A + P + G D
Sbjct: 338 QAGFISYPRTETDNFSPNIDLHSIVHEQVAHPNRGIYAQRLLDPEARLWRNPSNGGHDDK 397
Query: 183 DHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + SA E + +LY V +HFL S
Sbjct: 398 AHPPIHPTKFSAGETNWTDNHKKLYELVVRHFLACCS 434
>gi|223999503|ref|XP_002289424.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
gi|220974632|gb|EED92961.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
Length = 672
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 9/221 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-----GYELKLEWERQKLFD 63
++ YGPCQ PTLGF V+R+ +I +F PE FW + + N ++L W+R +L+D
Sbjct: 227 VISYGPCQFPTLGFVVERWARIETFVPEDFWFIEMTIRLNEDGSVSRSIRLNWKRVRLYD 286
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ ++ ++ ++ + ++K RP L TV L K AS L G + MQ AE
Sbjct: 287 RVMTIALYDACLEAGAAVIVSLTGRPKNKWRPIPLATVELQKRASKYLRIGSEELMQKAE 346
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSAL-ANNPVWGDYVERLLAE-GYAKPRSG-TD 180
LY QGFISYPRTE+ + FD + + A +G+Y LL+ + PR+G D
Sbjct: 347 ELYQQGFISYPRTETEKFRPEFDHHALIQSFQAVQGEFGNYATSLLSNSNFQNPRAGQND 406
Query: 181 AGDHPPITPMRSATEDMLGKDAWR-LYSYVCQHFLGTVSPD 220
HPPITP ++ + R +Y+ V +H+L S D
Sbjct: 407 DNAHPPITPAKAVDPQTIADPIQRKVYTLVVKHYLACCSRD 447
>gi|367006322|ref|XP_003687892.1| hypothetical protein TPHA_0L01010 [Tetrapisispora phaffii CBS 4417]
gi|357526198|emb|CCE65458.1| hypothetical protein TPHA_0L01010 [Tetrapisispora phaffii CBS 4417]
Length = 651
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 122/238 (51%), Gaps = 22/238 (9%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELK----LEWERQKLF 62
+++ YG CQ PTLGF V R+ +I +F PE+FW + + + +WE+ LF
Sbjct: 219 NIVISYGTCQFPTLGFVVDRFERIRNFIPEEFWYIQLQIANPDPNITTTTPFQWEKGHLF 278
Query: 63 DFDVATMFQKLVMQ--DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
D F +L ++ +VID+ K SK RP L TV L K + L + ++
Sbjct: 279 DRLSVLTFYELCIETAGNKAKVIDLKSKPTSKYRPLPLTTVELQKNCARFLKINAKQSLD 338
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALA--------NNPVWGDYVERLLA--- 169
AE+LY +GF+SYPRTE+ +P + D + + A N W DY + LL+
Sbjct: 339 AAEKLYQKGFLSYPRTETDIFPKTMDLKKLVEKQAQLDQTNSSNRSPWADYAKNLLSDNI 398
Query: 170 EGYAK---PRSGT-DAGDHPPITPMRSATED-MLGKDAWRLYSYVCQHFLGTVSPDCK 222
EG+++ PR+GT D HPPI P+ + E + R+Y YV +HFL S D K
Sbjct: 399 EGHSQFQTPRAGTHDDKAHPPIHPIIALGEHATITPVERRVYEYVVRHFLACCSEDGK 456
>gi|344229989|gb|EGV61874.1| hypothetical protein CANTEDRAFT_108430 [Candida tenuis ATCC 10573]
Length = 616
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 4/222 (1%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+V I+ YG CQ PTLGF V RY ++ +F PEKFW + + ++ + W + FD
Sbjct: 201 LVDEIVSYGTCQFPTLGFVVDRYKRVKNFVPEKFWYISTSVEKSNQTVSFSWAKTHFFDR 260
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
M + M+ + ++ K S +P L TV+L K ++ + A+ AE+
Sbjct: 261 LFVVMLYEECMKSTHGTIKGVTRKPTSNFKPFPLTTVSLQKDCATYFKMSAKEALDAAEK 320
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA-EG-YAKPRSG-TDA 181
LY G+ISYPRTE+ +P D R + + WG Y L+ +G Y PR G +
Sbjct: 321 LYQSGWISYPRTETDMFPPEMDLRSIIQTHTQDSRWGHYATSLMTVDGKYGIPRKGRNND 380
Query: 182 GDHPPITPMRSATEDMLGKDAWR-LYSYVCQHFLGTVSPDCK 222
HPPI P++ + + D R +Y YV + FL S D K
Sbjct: 381 KSHPPIHPVKYVNLETITNDKQRKVYEYVVRRFLACCSTDAK 422
>gi|195580189|ref|XP_002079938.1| GD24215 [Drosophila simulans]
gi|194191947|gb|EDX05523.1| GD24215 [Drosophila simulans]
Length = 857
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 8/220 (3%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF +RY +I +F E FW + + ++ W R +LFD
Sbjct: 201 IADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDK 260
Query: 65 DVATMFQKLVMQD---RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+ + L + + R L V ++ K + K RP L+TV + K+ S L + M +
Sbjct: 261 EACENYLLLCLAEPDPRAL-VESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTI 319
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE+LYT+GFISYPRTE+ + F + + WG + +R++ G PR+G +
Sbjct: 320 AEKLYTKGFISYPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKS 378
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + A E++ G +A R+Y V +HFL VS D
Sbjct: 379 DQAHPPIHPTKLA-ENLQGNEA-RVYELVVRHFLACVSKD 416
>gi|195345123|ref|XP_002039125.1| GM17356 [Drosophila sechellia]
gi|194134255|gb|EDW55771.1| GM17356 [Drosophila sechellia]
Length = 1251
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 8/220 (3%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF +RY +I +F E FW + + ++ W R +LFD
Sbjct: 201 IADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDK 260
Query: 65 DVATMFQKLVMQD---RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+ + L + + R L V ++ K + K RP L+TV + K+ S L + M +
Sbjct: 261 EACENYLLLCLAEPDPRAL-VESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTI 319
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE+LYT+GFISYPRTE+ + F + + WG + +R++ G PR+G +
Sbjct: 320 AEKLYTKGFISYPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKS 378
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + A E++ G +A R+Y V +HFL VS D
Sbjct: 379 DQAHPPIHPTKLA-ENLQGNEA-RVYELVVRHFLACVSKD 416
>gi|7960302|gb|AAF71288.1|AF255733_1 DNA topoisomerase III alpha [Drosophila melanogaster]
Length = 1250
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 8/220 (3%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF +RY +I +F E FW + + ++ W R +LFD
Sbjct: 226 IADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDK 285
Query: 65 DVATMFQKLVMQD---RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+ + L + + R L V ++ K + K RP L+TV + K+ S L + M +
Sbjct: 286 EACENYLLLCLAEPDPRAL-VESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTI 344
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE+LYT+GFISYPRTE+ + F + + WG + +R++ G PR+G +
Sbjct: 345 AEKLYTKGFISYPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKS 403
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + A E++ G +A R+Y V +HFL VS D
Sbjct: 404 DQAHPPIHPTKLA-ENLQGNEA-RVYELVVRHFLACVSKD 441
>gi|24585251|ref|NP_523602.2| topoisomerase 3alpha [Drosophila melanogaster]
gi|33860232|sp|Q9NG98.2|TOP3A_DROME RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|22946848|gb|AAF53813.2| topoisomerase 3alpha [Drosophila melanogaster]
gi|51092196|gb|AAT94511.1| LD04601p [Drosophila melanogaster]
gi|220950368|gb|ACL87727.1| Top3alpha-PA [synthetic construct]
Length = 1250
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 8/220 (3%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF +RY +I +F E FW + + ++ W R +LFD
Sbjct: 226 IADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDK 285
Query: 65 DVATMFQKLVMQD---RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+ + L + + R L V ++ K + K RP L+TV + K+ S L + M +
Sbjct: 286 EACENYLLLCLAEPDPRAL-VESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTI 344
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE+LYT+GFISYPRTE+ + F + + WG + +R++ G PR+G +
Sbjct: 345 AEKLYTKGFISYPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKS 403
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + A E++ G +A R+Y V +HFL VS D
Sbjct: 404 DQAHPPIHPTKLA-ENLQGNEA-RVYELVVRHFLACVSKD 441
>gi|384254048|gb|EIE27522.1| prokaryotic type I DNA topoisomerase [Coccomyxa subellipsoidea
C-169]
Length = 919
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 113/218 (51%), Gaps = 10/218 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQKLFDFDVA 67
I YGPCQ PTLG VQR +I + E FW ++ Y G L W+R +L+D +A
Sbjct: 214 IFSYGPCQFPTLGLIVQRQWEIQAHVAEPFWYIYAMYRAPEGQSCTLHWQRDRLYDHVIA 273
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
T+ + + + V + +Q+ + P L T++L K A + L + M+LAE LY
Sbjct: 274 TILYETCVDAPLATVTKVDARQKLRWPPLPLATLSLQKEAITHLRLPGERMMKLAEELYQ 333
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERL-LAEGYAKPRSGT-DAGDHP 185
+GFISYPRTE+ + ++D + + N+ WG + +R+ E +A PR G D HP
Sbjct: 334 EGFISYPRTETDVFDPAYDLKALVREHVNDARWGQHAQRIDSGEMWAAPRGGGHDDHAHP 393
Query: 186 PITPMRSATEDMLGKDAW-----RLYSYVCQHFLGTVS 218
PI P R + D W RLY ++ + FL + S
Sbjct: 394 PIHPTRWSAPD--ANQGWDPNKRRLYEFIVRSFLASCS 429
>gi|405122849|gb|AFR97615.1| DNA topoisomerase type I [Cryptococcus neoformans var. grubii H99]
Length = 959
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 8/220 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-----LKLEWERQKLFD 63
++ YGPCQ PTLGF V++Y ++ +F PE FW + L + + ++ W+R LFD
Sbjct: 209 LISYGPCQFPTLGFVVEQYNRVQAFVPETFWYIFVALEREHEDGEPSTVEFRWKRNHLFD 268
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
D+A + + V+ + K +K +P L TV L + S L P+ + LAE
Sbjct: 269 LDLAAVLYEQCTVSPQARVLKVESKPATKWKPLPLTTVELQQSGSRLLHMTPKQILDLAE 328
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
+LY +G +SYPRTE+ Y F+F + + WG Y ++LL + +PR+G +
Sbjct: 329 KLYQKGIVSYPRTETDQYDPKFEFNPLIQKQTLDNQWGAYAQKLLDGAFQRPRNGRKNDK 388
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P +A L D R++ + + FL + S + +
Sbjct: 389 AHPPIHP--TAHAGNLEGDERRVFELITRRFLASCSANAE 426
>gi|367016122|ref|XP_003682560.1| hypothetical protein TDEL_0F05380 [Torulaspora delbrueckii]
gi|359750222|emb|CCE93349.1| hypothetical protein TDEL_0F05380 [Torulaspora delbrueckii]
Length = 652
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 118/232 (50%), Gaps = 16/232 (6%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FD 65
+ ++ YG CQ PTLGF V R+ +I +F E+FW + +V +WER LFD
Sbjct: 226 STVISYGTCQFPTLGFVVDRFERIRNFVSEEFWYIQLQVVSEQASTIFQWERGHLFDRLS 285
Query: 66 VATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V +++ + I +V D+ K SK RP L TV L K S + ++ AE+
Sbjct: 286 VLAIYEACIETAGNIAKVSDLRSKPTSKYRPLPLTTVELQKNCSRFFKLNAKQSLDAAEK 345
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALA-------NNPVWGDYVERLLAE--GYAK- 174
LY +GF+SYPRTE+ +P D +G ++ A + W +Y LL++ G K
Sbjct: 346 LYQKGFLSYPRTETDTFPDKMDLKGLVTNQAQLDQDNTSRSAWANYAANLLSDTPGSNKF 405
Query: 175 --PRSGT-DAGDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PRSG+ D HPPI P+ S + + ++Y YV +HFL S D K
Sbjct: 406 KWPRSGSHDDKAHPPIHPVISLGPQANVTPTERKIYEYVARHFLACCSEDAK 457
>gi|85001333|ref|XP_955385.1| DNA topoisomerase iii [Theileria annulata strain Ankara]
gi|65303531|emb|CAI75909.1| DNA topoisomerase iii, putative [Theileria annulata]
Length = 607
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL YG CQ PTLGF V+R++ I +F E FWT+ + Q V T
Sbjct: 207 ILSYGTCQLPTLGFVVERFILIENFVSEPFWTIQVEVTQ----------------LAVLT 250
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+++ + + + + +K+ K P L+T+ + K S L MQLAE LY +
Sbjct: 251 LYENCIQNPSGI-IRKVLKKEVRKHPPLPLDTIEMNKDVSRYLRISSHKCMQLAEGLYNK 309
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAKPRSGTDAGD-HPP 186
GFISYPRTE+ +PSS D + + L++ P + +Y LL E G+ +P G + + HPP
Sbjct: 310 GFISYPRTETNVFPSSIDLKSIIGKLSSVPEFSEYTNTLLNEDGFHEPTKGNNNDEAHPP 369
Query: 187 ITPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPD 220
I P+ S T D ++ W LY Y+ + FL S D
Sbjct: 370 IHPVNSLTRDRAESEEHWLLYEYITRRFLACCSKD 404
>gi|207342920|gb|EDZ70541.1| YLR234Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 478
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 115/235 (48%), Gaps = 21/235 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELKLEWERQKLFD-FD 65
++ YG CQ PTLGF V R+ +I +F PE+FW + + NG +W+R LFD
Sbjct: 50 VVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLS 109
Query: 66 VATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V T ++ + + +V+D+ K +K RP L TV L K + L + ++ AE+
Sbjct: 110 VLTFYETCIETAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEK 169
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLS--------ALANNPVWGDYVERLLA------- 169
LY +GFISYPRTE+ +P + D + + A W Y LL
Sbjct: 170 LYQKGFISYPRTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNN 229
Query: 170 EGYAKPRSGT-DAGDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ PRSG+ D HPPI P+ S E + R+Y YV +HFL S D K
Sbjct: 230 NKFKFPRSGSHDDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAK 284
>gi|151941072|gb|EDN59452.1| DNA topoisomerase III [Saccharomyces cerevisiae YJM789]
gi|349579943|dbj|GAA25104.1| K7_Top3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 656
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 115/235 (48%), Gaps = 21/235 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELKLEWERQKLFD-FD 65
++ YG CQ PTLGF V R+ +I +F PE+FW + + NG +W+R LFD
Sbjct: 228 VVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLS 287
Query: 66 VATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V T ++ + + +V+D+ K +K RP L TV L K + L + ++ AE+
Sbjct: 288 VLTFYETCIETAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEK 347
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLS--------ALANNPVWGDYVERLLA------- 169
LY +GFISYPRTE+ +P + D + + A W Y LL
Sbjct: 348 LYQKGFISYPRTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNN 407
Query: 170 EGYAKPRSGT-DAGDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ PRSG+ D HPPI P+ S E + R+Y YV +HFL S D K
Sbjct: 408 NKFKFPRSGSHDDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAK 462
>gi|190405298|gb|EDV08565.1| DNA topoisomerase III [Saccharomyces cerevisiae RM11-1a]
gi|256271738|gb|EEU06775.1| Top3p [Saccharomyces cerevisiae JAY291]
gi|259148217|emb|CAY81464.1| Top3p [Saccharomyces cerevisiae EC1118]
gi|323332349|gb|EGA73758.1| Top3p [Saccharomyces cerevisiae AWRI796]
gi|323336488|gb|EGA77755.1| Top3p [Saccharomyces cerevisiae Vin13]
gi|323347440|gb|EGA81711.1| Top3p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764070|gb|EHN05595.1| Top3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 656
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 115/235 (48%), Gaps = 21/235 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELKLEWERQKLFD-FD 65
++ YG CQ PTLGF V R+ +I +F PE+FW + + NG +W+R LFD
Sbjct: 228 VVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLS 287
Query: 66 VATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V T ++ + + +V+D+ K +K RP L TV L K + L + ++ AE+
Sbjct: 288 VLTFYETCIETAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEK 347
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLS--------ALANNPVWGDYVERLLA------- 169
LY +GFISYPRTE+ +P + D + + A W Y LL
Sbjct: 348 LYQKGFISYPRTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNN 407
Query: 170 EGYAKPRSGT-DAGDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ PRSG+ D HPPI P+ S E + R+Y YV +HFL S D K
Sbjct: 408 NKFKFPRSGSHDDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAK 462
>gi|6323263|ref|NP_013335.1| DNA topoisomerase 3 [Saccharomyces cerevisiae S288c]
gi|136001|sp|P13099.1|TOP3_YEAST RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|173002|gb|AAA35161.1| DNA topoisomerase [Saccharomyces cerevisiae]
gi|609366|gb|AAB67406.1| Top3p: DNA Topoisomerase III [Saccharomyces cerevisiae]
gi|285813654|tpg|DAA09550.1| TPA: DNA topoisomerase 3 [Saccharomyces cerevisiae S288c]
gi|392297742|gb|EIW08841.1| Top3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 656
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 115/235 (48%), Gaps = 21/235 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELKLEWERQKLFD-FD 65
++ YG CQ PTLGF V R+ +I +F PE+FW + + NG +W+R LFD
Sbjct: 228 VVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLS 287
Query: 66 VATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V T ++ + + +V+D+ K +K RP L TV L K + L + ++ AE+
Sbjct: 288 VLTFYETCIETAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEK 347
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLS--------ALANNPVWGDYVERLLA------- 169
LY +GFISYPRTE+ +P + D + + A W Y LL
Sbjct: 348 LYQKGFISYPRTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNN 407
Query: 170 EGYAKPRSGT-DAGDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ PRSG+ D HPPI P+ S E + R+Y YV +HFL S D K
Sbjct: 408 NKFKFPRSGSHDDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAK 462
>gi|355572493|ref|ZP_09043605.1| DNA topoisomerase [Methanolinea tarda NOBI-1]
gi|354824533|gb|EHF08778.1| DNA topoisomerase [Methanolinea tarda NOBI-1]
Length = 946
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 115/219 (52%), Gaps = 11/219 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL G Q+PTL V R +I +FKPEK+W L + G +++ + FD A
Sbjct: 190 ILSVGRVQSPTLAMIVDREREIEAFKPEKYWQLRLLTGKGGEDIEARHTTSRFHTFDEA- 248
Query: 69 MFQKLVMQDRI---LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
L ++R L V + E + P +T + + VA++ LGY AM++AE L
Sbjct: 249 ----LAAKERSVPPLVVTSVVEGTKVDRAPSPFDTTSFI-VAAARLGYSAANAMRIAEEL 303
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DH 184
Y G+ISYPRT++T YP++ D LSA+ V+ VE ++A P G DH
Sbjct: 304 YMNGYISYPRTDNTVYPATLDLGSVLSAIRPT-VFRPDVEWVMANQRPVPTRGQKVSTDH 362
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PPI P A + LG++ W+LY V + FL T+SPD ++
Sbjct: 363 PPIHPTGPAGREELGEERWKLYELVVRRFLATLSPDARW 401
>gi|395836299|ref|XP_003791095.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha [Otolemur
garnettii]
Length = 1008
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 120/233 (51%), Gaps = 16/233 (6%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLH---PY-----LVQNGYE 51
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + PY + NG
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEAFHRIKVAAPYTKDGSVAWNGER 288
Query: 52 LKLEWERQKLFDFDVATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSA 110
L W Q D + F D + V+++ K +SK RP L+TV L K+AS
Sbjct: 289 CSL-W--QGXDDAPTGSCFLYFPDSXDPMATVVEVRSKPKSKWRPQALDTVELEKLASRK 345
Query: 111 LGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE 170
L + M++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L
Sbjct: 346 LRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTALVEQQTQDPHWGAFAQSILER 405
Query: 171 GYAKPRSGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
G PR+G+ + HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 406 GGPTPRNGSKSDQAHPPIHPTKYTSS--LQGDEQRLYEFIVRHFLACCSQDAQ 456
>gi|156836960|ref|XP_001642518.1| hypothetical protein Kpol_340p7 [Vanderwaltozyma polyspora DSM
70294]
gi|156113057|gb|EDO14660.1| hypothetical protein Kpol_340p7 [Vanderwaltozyma polyspora DSM
70294]
Length = 650
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 122/241 (50%), Gaps = 30/241 (12%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV---QNGYELK-LEWERQKLF 62
+++ YG CQ PTLGF V RY +I F PE+FW + + +NG E +WER +F
Sbjct: 220 NVVISYGTCQFPTLGFVVDRYERIRHFIPEEFWHIQLQIENKDKNGGEFTTFQWERGHIF 279
Query: 63 D-FDVATMFQK-LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
D V T ++ L + +VID+ K SK RP L TV L K + L + ++
Sbjct: 280 DRLTVLTFYEVCLELAGNQAKVIDLKSKPTSKYRPLPLTTVELQKNCARFLRLNAKQSLD 339
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALA------NNPVWGDYVERLLAEG--- 171
AE+LY +GFISYPRTE+ +P + + + + A + W Y E+L+++
Sbjct: 340 AAEKLYQKGFISYPRTETDIFPQTMNLKSLVEKQAQLDQGNHRSPWAAYAEQLISDAPGT 399
Query: 172 --YAKPRSGT-DAGDHPPITPMRSATEDMLGKDAWRL-------YSYVCQHFLGTVSPDC 221
+ PRSGT D HPPI P+ S LG A + Y YV +HFL S D
Sbjct: 400 NKFKFPRSGTHDDKAHPPIHPIIS-----LGAKATNITPVERSVYEYVVRHFLACCSEDA 454
Query: 222 K 222
K
Sbjct: 455 K 455
>gi|363751663|ref|XP_003646048.1| hypothetical protein Ecym_4154 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889683|gb|AET39231.1| hypothetical protein Ecym_4154 [Eremothecium cymbalariae
DBVPG#7215]
Length = 638
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 114/229 (49%), Gaps = 15/229 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGY----ELKLEWERQKLFD- 63
++ YG CQ PTLGF V RY +I F E+FW L L ++G ++ W+R LFD
Sbjct: 216 LISYGTCQFPTLGFVVDRYERIQRFVTEEFWLLQATLEESGSAGGGKVLFSWDRGHLFDR 275
Query: 64 FDVATMFQKLVMQ-DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
V +++ + +V+ +S K+ SK RP L TV L K S L + ++ A
Sbjct: 276 LCVLGIYETCSEHAENRAKVVHVSSKETSKYRPLPLTTVELQKNCSKFLRMSAKQSLDAA 335
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA-------EGYAKP 175
E+LY +GFISYPRTE+ + D R + + WG Y LL+ G+ P
Sbjct: 336 EKLYQKGFISYPRTETDVFSKQMDLRALVQQQTAHQQWGAYASGLLSNENSSSGNGFQWP 395
Query: 176 RSGT-DAGDHPPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVSPDCK 222
R+G D HPPI P+ L D R+Y YV +HFL S D K
Sbjct: 396 RAGNHDDQAHPPIHPVTCVQPGGDLNFDEKRVYEYVVRHFLACCSQDGK 444
>gi|409045159|gb|EKM54640.1| hypothetical protein PHACADRAFT_97897 [Phanerochaete carnosa
HHB-10118-sp]
Length = 705
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ------NGYELKLEWER 58
V++ GPCQ PTLGF V RY Q+ SF E FW ++ L + E W R
Sbjct: 202 VISYGSTIGPCQFPTLGFVVSRYNQVKSFVSETFWHIYLALTRIDETTGEESETPFTWRR 261
Query: 59 QKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
LF+ +VA + V+ + V ++ K K +P L TV+L K S L P+
Sbjct: 262 GHLFELEVALAIYEHVLDNPTANVTRVTRKNTKKWKPLPLTTVDLQKAGSRLLKISPKKV 321
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG 178
+ +AE LY QGF+SYPRTE+ + FDF + +P WG + + G ++
Sbjct: 322 LDIAEHLYQQGFLSYPRTETDQFDPQFDFMTLIQKQIVDPAWGQFA----SSGKKNDKA- 376
Query: 179 TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
HPPI P +A L D R+Y Y+ + FL + S D
Sbjct: 377 -----HPPIHP--TAHAGNLAGDEKRVYEYITRRFLASCSKDA 412
>gi|444322976|ref|XP_004182129.1| hypothetical protein TBLA_0H03290 [Tetrapisispora blattae CBS 6284]
gi|387515175|emb|CCH62610.1| hypothetical protein TBLA_0H03290 [Tetrapisispora blattae CBS 6284]
Length = 659
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 120/234 (51%), Gaps = 19/234 (8%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELK--LEWERQKLFDF 64
++++ YG CQ PTLGF V R+ +I +F E+FWT+ ++ W+R LFD
Sbjct: 232 SVVISYGTCQFPTLGFVVDRFERIRNFISEEFWTIQLHIENKDANTPTVFRWQRGNLFDR 291
Query: 65 DVATMFQKLVMQ--DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
F + ++ +VID+ K SK RP L TV L K + L + ++ A
Sbjct: 292 LSCLAFYESCIEIAGNKAKVIDLKSKPTSKYRPLPLTTVELQKNCAKFLKLNAKQSLDAA 351
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALAN-----NPVWGDYVERLLAEG------ 171
E+LY +GF+SYPRTE+ +P D R + A W +Y E LL++
Sbjct: 352 EKLYQKGFVSYPRTETDIFPKVMDLRALVENQAQIGQQGRSPWAEYAEGLLSDDPYAPNK 411
Query: 172 YAKPRSGT-DAGDHPPITPMRS--ATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
Y PR+GT D HPPI P+ S AT ++ + R+Y Y+ +HFL + S D K
Sbjct: 412 YQFPRNGTHDDKAHPPIHPVISLGATANITPVER-RVYEYISRHFLASCSTDAK 464
>gi|154412191|ref|XP_001579129.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
gi|121913332|gb|EAY18143.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
Length = 662
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 118/214 (55%), Gaps = 4/214 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ +GPCQ PTLGF V+ + PE FW + P + ++ ++ L+W+R++LF A
Sbjct: 203 LISFGPCQFPTLGFVVEAFFNHIKHVPESFWKIEPLITKDNIKVTLKWDRKRLFCKLSAF 262
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
++ + + +V+ + E++ +P L+T+ L + S L Q +M+ AE+LY
Sbjct: 263 AIYVDILDNPMAKVLTVDERESLSNKPLPLSTIELQRRCSKYLKISAQRSMEAAEKLYQN 322
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALAN-NPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
G ISYPRTE+ ++ + F F+ ++AL G Y ++L + PR+G + + HPP
Sbjct: 323 GCISYPRTETDSFSADFKFKDIVNALTRFKGEIGQYSNKILQQ-IVPPRAGKHSDNAHPP 381
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
I P++ + D +++ +VC+HFL S D
Sbjct: 382 IYPIK-VPDKFDTPDQQKVFEFVCRHFLACCSKD 414
>gi|403369401|gb|EJY84543.1| DNA topoisomerase [Oxytricha trifallax]
Length = 894
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 20/229 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL YGPCQ PTLGF V+R +I +FK E W L N E E +++ F ++T
Sbjct: 155 ILSYGPCQFPTLGFVVERANKIKNFKSEITWRLELVHSYNTKEEGSENTTKQVIKF-IST 213
Query: 69 MFQKLVMQDRILE------------VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQ 116
++L +I+E VID+++ ++ + RP LNT+ K+ S LG+
Sbjct: 214 REKEL--DKKIIEDLYSKIKGMNPAVIDVTKTEKYRPRPTPLNTIEAQKLISKKLGFSSD 271
Query: 117 MAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA-EGYAKP 175
AM+ E LY + +ISYPRTE+ Y + + R + L N+ + + ++LL Y P
Sbjct: 272 HAMEYMEDLYRKAYISYPRTETNVYHPTINLRRIIQELNNDKDYSGFTKKLLELNNYGGP 331
Query: 176 RSG-TDAGDHPPITPMRSATED---MLGKDAWRLYSYVCQHFLGTVSPD 220
R+G D HPPI P+R E+ L + ++Y +C+HFL +VS D
Sbjct: 332 RNGKQDDKAHPPIHPVRFMKEEDKVNLPPNQVKVYDMICRHFLASVSKD 380
>gi|348689657|gb|EGZ29471.1| hypothetical protein PHYSODRAFT_470148 [Phytophthora sojae]
Length = 916
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 8/222 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL---HPYLVQ-NGYELKLEWERQKLFDF 64
++ YGPCQ PTLGF V+R+L+I +F+ E F+ + H Q + +W+R LFD
Sbjct: 210 VISYGPCQFPTLGFVVERFLKIQNFEREAFYYISVTHQQTDQPDAPTTTFKWKRGHLFDR 269
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ +++ + + + ++ K +P L TV L K AS L + M+ AE
Sbjct: 270 MACLCIYECLVESQTATIESVDKRPSWKRKPLPLTTVELQKRASRWLRISSEATMKAAES 329
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG-TDA 181
LY +GFISYPRTE++ + D + N+ WG+YV + L +G Y PR G +D
Sbjct: 330 LYNKGFISYPRTETSKFKEGTDLMSLVRLHENHQQWGNYVAQQLLDGGKYEAPRHGNSDD 389
Query: 182 GDHPPITPMRSATEDMLGK-DAWRLYSYVCQHFLGTVSPDCK 222
HPPI P +S + L + ++Y +V +HFL S D K
Sbjct: 390 QAHPPIHPTKSVNVNTLSDPNEKKVYEFVTRHFLACCSRDAK 431
>gi|195397674|ref|XP_002057453.1| GJ18138 [Drosophila virilis]
gi|194141107|gb|EDW57526.1| GJ18138 [Drosophila virilis]
Length = 1355
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 6/219 (2%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF +RY +I +F E FW + ++ W R +LFD
Sbjct: 201 IADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIRVLHTIEDLTVEFNWARNRLFDK 260
Query: 65 DVATMFQKLVMQDR--ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
+ + L + + V ++ K + K RP L+TV + K+ S L + M +A
Sbjct: 261 EACENYLLLCLAEPEPRATVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIA 320
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
E+LY++GFISYPRTE+ + F+ + + WG + +R+L G PR+G +
Sbjct: 321 EKLYSKGFISYPRTETNQFSKEFELAPLVEQHTGHEAWGAFAQRVLEWG-PNPRNGNKSD 379
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + T ++ G +A R+Y V +HFL VS D
Sbjct: 380 QAHPPIHPTKMVT-NLQGNEA-RVYELVVRHFLACVSKD 416
>gi|393217722|gb|EJD03211.1| prokaryotic type I DNA topoisomerase [Fomitiporia mediterranea
MF3/22]
Length = 1081
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 110/226 (48%), Gaps = 17/226 (7%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELK--------------LEWE 57
YGPCQ PTLGF V RY Q+ +F PE FW ++ L ++G ++ W
Sbjct: 207 YGPCQFPTLGFVVSRYEQVQAFVPEAFWYIYLSLSRSGASVEKGGKKKNGEEETTEFSWR 266
Query: 58 RQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQM 117
R +LFD A + V+++ + V + K K +P L T+ L K S L P+
Sbjct: 267 RVRLFDRLAAEAIYEYVVENPVARVTKKTCKPTKKWKPLPLTTIELQKAGSRLLRLAPKT 326
Query: 118 AMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRS 177
+ +AE+LY +G +SYPRTE+ Y FDF + +P WG + +L + PR
Sbjct: 327 VLDIAEKLYQRGLLSYPRTETDQYDPQFDFMSLIGKQTVDPTWGGFATQLQNGEFTSPRK 386
Query: 178 GTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
G + HPPI P A L D R+Y +V + FL + D +
Sbjct: 387 GKNNDKAHPPIHPTNYAGN--LAGDEKRVYEFVTRRFLASCHKDAE 430
>gi|401409598|ref|XP_003884247.1| putative DNA topoisomerase III alpha [Neospora caninum Liverpool]
gi|325118665|emb|CBZ54216.1| putative DNA topoisomerase III alpha [Neospora caninum Liverpool]
Length = 870
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 24/230 (10%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-------NGYELKLE--WERQK 60
+ YGPCQ+PTLGF V R++++ +F E +WT+ + + N L ++ W+RQ+
Sbjct: 208 ISYGPCQSPTLGFVVSRFVEVENFVREAYWTIRVTINKLDDEKGPNAPPLSVDFTWDRQR 267
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
LFD + ++ +++ + V D+ + +K RP L TV L K+AS L M
Sbjct: 268 LFDQLAVLVLYEMCLENPVATVTDVRGTERTKPRPVPLCTVELHKMASRKLRMSSAQCMS 327
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT- 179
+AE LY +G ISYPRTE+ + + D + + WG Y ++L+ + PR G
Sbjct: 328 IAESLYQRGIISYPRTETEVFSPTMDLLALIRVHTGSTAWGAYAQKLVEGDFLWPRDGAR 387
Query: 180 DAGDHPPITPMRSATEDMLGK-DAWR-------------LYSYVCQHFLG 215
D HPPI P++ K D W+ LY ++ +HFL
Sbjct: 388 DDKAHPPIHPLKLMQRSEFEKEDEWKTKVNSGGLCTRLQLYEFITRHFLA 437
>gi|195484485|ref|XP_002090715.1| GE13263 [Drosophila yakuba]
gi|194176816|gb|EDW90427.1| GE13263 [Drosophila yakuba]
Length = 1229
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 8/220 (3%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF +RY +I +F E FW + + ++ W R +LFD
Sbjct: 201 IADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFNWGRNRLFDK 260
Query: 65 DVATMFQKLVMQD---RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+ + L + + R L V ++ K + K RP L+TV + K+ S L + M +
Sbjct: 261 EACENYLLLCLAEPEPRAL-VESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTV 319
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE+LY++GFISYPRTE+ + F + + WG + +R++ G PR+G +
Sbjct: 320 AEKLYSKGFISYPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKS 378
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + A E++ G +A R+Y V +HFL VS D
Sbjct: 379 DQAHPPIHPTKLA-ENLQGNEA-RVYELVVRHFLACVSKD 416
>gi|195436636|ref|XP_002066263.1| GK18189 [Drosophila willistoni]
gi|194162348|gb|EDW77249.1| GK18189 [Drosophila willistoni]
Length = 1234
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 8/220 (3%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF +RY ++ +F E FW + ++ W R +LF+
Sbjct: 201 IADKLISYGSCQIPTLGFVAERYKEVEAFVSEPFWKVKVLHTIEDLTVEFNWARNRLFNK 260
Query: 65 DVATMFQKLVMQD---RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+ + L + + R L V +++ K + K RP L+TV + K+ S L + M +
Sbjct: 261 EECENYLMLCLAEPAPRAL-VENVTVKPKHKWRPTPLDTVEMEKMGSRKLKLSAKETMTI 319
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE+LY++GFISYPRTE+ + F+ + ++ WG + +R+L G PR+G +
Sbjct: 320 AEKLYSKGFISYPRTETNQFTKEFNLVPLVELHKDHNDWGAFAQRVLDWG-PNPRNGNKS 378
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P+++A ++ G +A R+Y V +HFL VS D
Sbjct: 379 DQAHPPIHPIKAAI-NLQGNEA-RVYEMVVRHFLACVSKD 416
>gi|123431134|ref|XP_001308043.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
gi|121889702|gb|EAX95113.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
Length = 644
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 116/214 (54%), Gaps = 4/214 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ +G CQ PTLGF V+ +L PE FW + P + ++ ++ L+W+R++LF
Sbjct: 203 LISFGSCQFPTLGFVVEAFLNHIKHVPEYFWKIDPIITKDNIKVTLKWDRKRLFCKLSTF 262
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
++ + + +V+ + E+QE +P L+T+ L + S L Q +M AE+LY
Sbjct: 263 AIYAYILDNPMAKVLKVDERQELSFKPLPLSTIELQRRCSKYLKISAQRSMDAAEKLYQN 322
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALAN-NPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
G ISYPRTE+ ++ S F F ++ L N G Y ++L + PR+G + + HPP
Sbjct: 323 GCISYPRTETDSFSSDFKFFDVVNELTRFNGQIGQYSNKILQQ-IVPPRAGKHSDNAHPP 381
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
I P++ + D +++ +VC+HFL S D
Sbjct: 382 IYPIK-VPDKFDTPDQQKVFDFVCRHFLACCSKD 414
>gi|126178720|ref|YP_001046685.1| DNA topoisomerase [Methanoculleus marisnigri JR1]
gi|125861514|gb|ABN56703.1| DNA topoisomerase I [Methanoculleus marisnigri JR1]
Length = 931
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 108/217 (49%), Gaps = 3/217 (1%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
T IL G Q+PTL V+R +I SF P+ +W L ++G ++ + D +
Sbjct: 188 TNILSVGRVQSPTLAMIVEREREIESFVPQTYWMLSLATEKDGVTIEARHTAGRFTDHEA 247
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + + L V D+ E Q++ P +T + VA+S LG AM+LAE LY
Sbjct: 248 ALAAEAGTKEP--LVVTDVKEGQKNDRAPTPFDTTTFI-VAASRLGLSAANAMRLAEDLY 304
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
G+ISYPRT++T YP S + L+ L D R ++ DHPP
Sbjct: 305 MNGYISYPRTDNTVYPKSLNLNAILNTLKGGVFDKDVAWVQQNRRPVPTRGKKESTDHPP 364
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
I P SAT + LG+D W++Y V + FL T+SPD +
Sbjct: 365 IHPTGSATREALGQDRWKVYELVVRRFLATLSPDANW 401
>gi|45200996|ref|NP_986566.1| AGL101Cp [Ashbya gossypii ATCC 10895]
gi|44985766|gb|AAS54390.1| AGL101Cp [Ashbya gossypii ATCC 10895]
gi|374109812|gb|AEY98717.1| FAGL101Cp [Ashbya gossypii FDAG1]
Length = 631
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 116/225 (51%), Gaps = 12/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV--QNGYELKLEWERQKLFD-FD 65
++ YG CQ PTLGF V RY +I +F E FW L + Q ++ W+R LFD
Sbjct: 214 LISYGTCQFPTLGFVVDRYERIQNFVSEGFWYLQLLIEDPQCARKVTFSWDRGHLFDRLC 273
Query: 66 VATMFQKLV--MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
V +++ + ++ L V ++ K SK RP L TV L K S L + ++ AE
Sbjct: 274 VLCLYETCIEATGNKAL-VSSVTAKDTSKYRPLPLTTVELQKNCSKFLRMSAKQSLDAAE 332
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA-EGYAK---PRSGT 179
+LY +GFISYPRTE+ + + +G + + WG Y +LL+ EG + PR G
Sbjct: 333 KLYQKGFISYPRTETDVFSKQANLQGLVQQQTEHSQWGAYASKLLSGEGSNRFQWPREGK 392
Query: 180 -DAGDHPPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVSPDCK 222
D HPPI P+ A D L D R+Y YV +HFL S D K
Sbjct: 393 HDDQAHPPIHPVLCAQPDANLSVDEKRVYEYVVRHFLACCSQDAK 437
>gi|159040701|ref|YP_001539953.1| DNA topoisomerase type IA central domain-containing protein
[Caldivirga maquilingensis IC-167]
gi|157919536|gb|ABW00963.1| DNA topoisomerase type IA central domain protein [Caldivirga
maquilingensis IC-167]
Length = 610
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 9/216 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L YGPCQTP L VQR L+ +FKPE ++ + + NG ++LE K + A
Sbjct: 200 LSYGPCQTPVLNLVVQRALERENFKPEVYYKIKLIIEANGELIELE-SIDKFKNLKEAQE 258
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
V + + V +I K+ P L TV L + AS L + + AE LY QG
Sbjct: 259 ALSRVKAGKAV-VKNIEAKRVHVNPPKPLETVELERRASRFLNIRSKQTLDAAEELYRQG 317
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPIT 188
+ISYPRTE+ YP + D RG L L + +G Y LLA G +P +G D + HPPI
Sbjct: 318 YISYPRTETNIYPPTLDLRGILRNLTSTSTYGQYARHLLA-GELRPTAGKDNDNAHPPIH 376
Query: 189 PMRSATE-DMLGK----DAWRLYSYVCQHFLGTVSP 219
P+++A + +++ + W +Y V +HFL T+SP
Sbjct: 377 PVKAADKPELMARFRDFKYWLIYDLVVRHFLATLSP 412
>gi|13540850|ref|NP_110538.1| DNA topoisomerase I [Thermoplasma volcanium GSS1]
gi|14324233|dbj|BAB59161.1| DNA topoisomerase 1 [Thermoplasma volcanium GSS1]
Length = 770
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 119/215 (55%), Gaps = 9/215 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA-T 68
L G QTPTL V+R +I +FKP+ FWT+ + G E + +E+ KLFD DVA +
Sbjct: 194 LSAGRVQTPTLAIVVEREREIENFKPQTFWTISITFQKEG-EFQAAYEK-KLFDKDVANS 251
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+F + +D VI + +ES RP +T L+ AS +G P AM +AE LYT+
Sbjct: 252 VFSSINGRDGT--VIKFEKHEESIRRPTPFSTTEFLREASR-IGIMPTKAMSIAESLYTR 308
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA-EGYAKPRSGTDAGDHPPI 187
G ISYPRT++T YP + + R L + + + +YVE +L E R T+ DHPPI
Sbjct: 309 GLISYPRTDNTVYPRAINLRNVLQKFSKSK-YSNYVEEILGWEKIIPSRGRTETTDHPPI 367
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ E++ G D R+Y + + F+ T+ D +
Sbjct: 368 YPVEMPKEELKG-DYARIYDLILRRFISTLYRDGR 401
>gi|401624635|gb|EJS42690.1| top3p [Saccharomyces arboricola H-6]
Length = 655
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFD-FD 65
++ YG CQ PTLGF V R+ +I +F E+FW + + NG +W+R LFD
Sbjct: 228 VVSYGTCQFPTLGFVVDRFERIRNFIAEEFWYIQLTVDNKDNGGTTTFQWDRGHLFDRLS 287
Query: 66 VATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V T+++ + + +V+D+ K SK RP L TV L K + L + ++ AE+
Sbjct: 288 VLTIYETCIETAGNVAKVVDLKSKPTSKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEK 347
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTL--------SALANNPVWGDYVERLL------AE 170
LY +GFISYPRTE+ +P + D + + S+ A W Y LL
Sbjct: 348 LYQKGFISYPRTETDTFPQAMDLKALVEKQAQLDQSSPAGKTAWASYAASLLTPESTSTN 407
Query: 171 GYAKPRSGT-DAGDHPPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVSPDCK 222
+ RSG+ D HPPI P+ S D + R+Y YV +HFL S D K
Sbjct: 408 KFNFSRSGSHDDKAHPPIHPITSLAPDANVSPVERRVYEYVARHFLACCSEDAK 461
>gi|58259767|ref|XP_567296.1| DNA topoisomerase type I [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229346|gb|AAW45779.1| DNA topoisomerase type I, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 828
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 14/220 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-----LKLEWERQKLFD 63
++ YGPCQ PTLGF V++Y ++ +F PE FW + L + + ++ W+R LFD
Sbjct: 209 LISYGPCQFPTLGFVVEQYTRVQAFVPETFWYIFVALEREHEDGEPSTVEFRWKRNHLFD 268
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
D+A + + + V+ + K +K +P L TV L + S L P+ + LAE
Sbjct: 269 LDLAAVLYEQCTVNPQTRVLKVESKPATKWKPLPLTTVELQQSGSRLLHMTPKRILDLAE 328
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
+LY +G +SYPRTE+ Y FDF + + WG Y ++ +KPR+G +
Sbjct: 329 KLYQKGIVSYPRTETDQYDPKFDFNSLIQKQTLDNQWGAYAQK------SKPRNGRKNDK 382
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P +A L D R++ + + FL + S + +
Sbjct: 383 AHPPIHP--TAHAGNLEGDERRVFELITRRFLASCSTNAE 420
>gi|322702147|gb|EFY93895.1| DNA topoisomerase III [Metarhizium acridum CQMa 102]
Length = 689
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 1/197 (0%)
Query: 26 RYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDI 85
RY ++ +F PE FW++ ++G + WER +LFD + + + + +VI++
Sbjct: 252 RYFRVKNFIPEPFWSISLMHNRDGKNVNFSWERNRLFDRMTTIILYERCLLAKTAKVINV 311
Query: 86 SEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSF 145
EK + +P L TV L K A+ L Q AM +AE LY +GFISYPRTE+ +
Sbjct: 312 QEKPTRRYKPLPLTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGM 371
Query: 146 DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITPMRSATEDMLGKDAWR 204
+ + + + + WG + + L+ + +PR G D HPPI P+ A +L D
Sbjct: 372 NLKALVQKQSPDQRWGQFAQNLVNGAFKQPREGRHDDKAHPPIHPITYAAPSVLSPDEGL 431
Query: 205 LYSYVCQHFLGTVSPDC 221
LY YV + FL S D
Sbjct: 432 LYEYVVRRFLACCSEDA 448
>gi|195119033|ref|XP_002004036.1| GI18230 [Drosophila mojavensis]
gi|193914611|gb|EDW13478.1| GI18230 [Drosophila mojavensis]
Length = 1279
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 7/224 (3%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F A + LI YG CQ PTLGF +RY +I +F E FW + ++ W R
Sbjct: 196 LFPANIADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIRVLHTIEDLTVEFNWARN 255
Query: 60 KLFDFDVATMFQKLVMQDR--ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQM 117
+LFD + + L + + V + K + K RP L+TV + K+ S L +
Sbjct: 256 RLFDKEACENYLLLCLAEPEPRATVESVVVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKE 315
Query: 118 AMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRS 177
M +AE+LY++GFISYPRTE+ + F+ + + WG + +R+L G PR+
Sbjct: 316 TMTIAEKLYSKGFISYPRTETNQFSKEFELTPLVEQQTGHEAWGAFAQRVLEWG-PNPRN 374
Query: 178 GTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
G + HPPI P + + ++ G +A R+Y V +HFL VS D
Sbjct: 375 GNKSDQAHPPIHPTKLVS-NLQGNEA-RVYELVVRHFLACVSKD 416
>gi|386001200|ref|YP_005919499.1| DNA topoisomerase I [Methanosaeta harundinacea 6Ac]
gi|357209256|gb|AET63876.1| DNA topoisomerase I [Methanosaeta harundinacea 6Ac]
Length = 738
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 118/216 (54%), Gaps = 9/216 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA-T 68
L G Q+PTL V R +I +FKP+ +W + L ++ L+++ E+ ++++ D+A +
Sbjct: 188 LSVGRVQSPTLALIVDREKEIEAFKPQPYWEISACLEKD---LRVKHEKGRIWEGDLARS 244
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+F++L + V+ I EK + P +T + A+S +G+ AM++AE LYT
Sbjct: 245 IFEEL---GEVATVVSIKEKTRTDRPPAPFDTTAFIS-AASGIGFSAANAMRIAEWLYTS 300
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GFISYPRTE+T YP + D R +S P D ER+L+ R + DHPPI
Sbjct: 301 GFISYPRTENTVYPKTLDLRALVSIFKKGPFRED-AERVLSGPMVPTRGKRFSTDHPPIY 359
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
P A + + D W++Y V + FL T+S ++I
Sbjct: 360 PTAPAAKADMKPDQWKIYELVVRRFLATLSGPSRWI 395
>gi|307354072|ref|YP_003895123.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
gi|307157305|gb|ADN36685.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
Length = 932
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 113/216 (52%), Gaps = 5/216 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL G Q+PTL V R +I +F PE +W + L E K E + +D +
Sbjct: 190 ILSVGRVQSPTLAMIVDREKEIEAFVPEPYWMIS--LDSETEEEKFEARHTEGKFWDKES 247
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ L L VIDI E + P +T + VA+S LG AM++AE LY
Sbjct: 248 AERSLKGTKEPLTVIDIKEGTRADHAPTPFDTTAYI-VAASRLGLSASNAMRIAEELYMN 306
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPPI 187
G+ISYPRT++T YPSS D +G L+ L +P + VE + A P G + DHPPI
Sbjct: 307 GYISYPRTDNTIYPSSLDLKGILTELKKSP-FKREVEWVSANMRPSPTRGKKSSTDHPPI 365
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P +A++ + + AW++Y V + FL T+SPD ++
Sbjct: 366 HPTAAASKGDMDETAWKVYELVVRRFLATLSPDARW 401
>gi|424513003|emb|CCO66587.1| predicted protein [Bathycoccus prasinos]
Length = 751
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 41/246 (16%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYEL---------------- 52
++ YGPCQ PTLGF VQR + + PEKFWT + GY++
Sbjct: 269 VISYGPCQFPTLGFIVQRKWDVDAHVPEKFWT-----ISIGYQMVEGGQQQQQQQQQQRQ 323
Query: 53 ---------------KLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCG 97
+ W RQ++FD +A + V V+ ++ K P
Sbjct: 324 QRQRRGGGGGGGRVVEFRWNRQRVFDEHLANSLFERVQNAPHATVLSTRGQEIKKWPPHP 383
Query: 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANN 157
LNT+ + K + L P+ M++AE LY +GFISYPRTE+ +P SF+F ++ N+
Sbjct: 384 LNTLEMQKRVNRVLRIAPEKIMKVAEELYQKGFISYPRTETDRFPDSFNFLENIALFYNH 443
Query: 158 PVWGDYVERLLA-EGYAKPRSG-TDAGDHPPITPMRSATEDMLG---KDAWRLYSYVCQH 212
+G Y L+ +G+ KP G D HPPI P + AT ++ ++Y +V +H
Sbjct: 444 DTFGPYARELVERDGFRKPPGGHRDDKAHPPIYPAKLATAHEYNGWKRENQQVYDFVLRH 503
Query: 213 FLGTVS 218
FL T S
Sbjct: 504 FLATCS 509
>gi|301092946|ref|XP_002997323.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
gi|262110843|gb|EEY68895.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
Length = 907
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 8/222 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL---HPYLVQ-NGYELKLEWERQKLFDF 64
++ YGPCQ PTLGF V+R+L+I +F+ E F+ + H Q + +W+R FD
Sbjct: 210 VISYGPCQFPTLGFVVERFLKIRNFEREAFYYISVTHQQTDQPDAPTTTFKWKRGHFFDR 269
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ +++ + + + ++ K +P L TV L K AS L + M+ AE
Sbjct: 270 MACLCIYESLVESQTAAIESVDKRPSWKRKPLPLTTVELQKRASRWLRISSEATMKAAES 329
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG-TDA 181
LY +G ISYPRTE++ + D + A + WG+YV R L +G Y PR G +D
Sbjct: 330 LYNKGLISYPRTETSKFKEGTDLMSLVRAHETHQQWGNYVTRQLLDGGKYEAPRHGNSDD 389
Query: 182 GDHPPITPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P +S + L D ++Y +V HFL S D K
Sbjct: 390 QAHPPIHPTKSVDLNTLPDPDEKKVYEFVSLHFLACCSRDAK 431
>gi|298674695|ref|YP_003726445.1| DNA topoisomerase [Methanohalobium evestigatum Z-7303]
gi|298287683|gb|ADI73649.1| DNA topoisomerase [Methanohalobium evestigatum Z-7303]
Length = 772
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 103/216 (47%), Gaps = 7/216 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L GPCQTPT GF +R I F+P FW + N + + K FD A
Sbjct: 193 VLSIGPCQTPTCGFVYEREKAIKEFEPRDFWKIEAVFTHNDIDFQGTHRTGKFFDKQKAD 252
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + +V + K+ P LNT LK AS LG A+++AE+LY
Sbjct: 253 AVYNKISDCKTGQVTNKKVKETKSSPPYPLNTNEFLKRASKFLGLNSDRALEIAEQLYLS 312
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSGT-DAGDHPP 186
GF SYPRTE+ Y + FDF+ ++ L +E +E PR+GT DA DHPP
Sbjct: 313 GFTSYPRTETNKYANDFDFQSRVAELTKKAHKELALEVFKNSEDGFNPRNGTKDAQDHPP 372
Query: 187 ITPMRSATEDMLGK-----DAWRLYSYVCQHFLGTV 217
I P++SA + + W +Y + +HFL +
Sbjct: 373 IHPIKSANKGDINNAVNDSKGWDVYDLIVRHFLANL 408
>gi|365759377|gb|EHN01167.1| Top3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 601
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 117/243 (48%), Gaps = 35/243 (14%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN---GYELKLEWERQKLFDFD 65
++ YG CQ PTLGF V R+ +I +F PE+FW + +V N G +W+R LFD
Sbjct: 171 VVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQ-LVVDNKDSGGTTTFQWDRGHLFDRQ 229
Query: 66 VATMFQKLVMQDR--ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
F + ++ + +V+D+ K SK RP L TV L K S L + ++ AE
Sbjct: 230 SVLTFYETCIETAGGVAKVVDLKSKPTSKYRPLPLTTVELQKNCSRYLRLNAKQSLDAAE 289
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALAN--------NPVWGDYVERLL----AEG 171
+LY +GFISYPRTE+ +P + + + A W Y LL A G
Sbjct: 290 KLYQKGFISYPRTETDTFPQAMHLKSLVEKQAQLDQPGAGGKTAWASYAASLLLPESASG 349
Query: 172 -----YAKPRSGT-DAGDHPPITPMRSATEDMLGKDA------WRLYSYVCQHFLGTVSP 219
+ PR G+ D HPPI P+ S LG DA R+Y YV +HFL S
Sbjct: 350 NNTNRFQLPRGGSHDDKAHPPIHPIVS-----LGPDANVSPVERRVYEYVARHFLACCSE 404
Query: 220 DCK 222
D K
Sbjct: 405 DAK 407
>gi|313245530|emb|CBY40233.1| unnamed protein product [Oikopleura dioica]
Length = 914
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 5/220 (2%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKL 61
F A+ + ++ +G CQ PTLGF V+R+ I F+PEKFW + + + G W R +L
Sbjct: 197 FPALASRLVSFGSCQFPTLGFVVERWRSIEEFQPEKFWKIEVHHTRGGMNTLFTWSRVRL 256
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
F + + +V + K +SK RP L TV L K LG + M +
Sbjct: 257 FSQRAVVAIYDEIEESGRAKVTHLESKPKSKWRPFPLETVELEK-KGRMLGLTAKEIMSV 315
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE+LY +G+ISYPRTE+ +P S D R + A + + + +L G PR+G
Sbjct: 316 AEKLYLKGYISYPRTETNIFPKSLDLRPMVEAQQRDNRFTTFASDILQNGL-NPRNGKKT 374
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ HPPI P++ ++G +A +++ ++ + FL +S D
Sbjct: 375 DEAHPPIHPLKEGA-GLVGPEA-KVHEFISRRFLACLSRD 412
>gi|241953321|ref|XP_002419382.1| DNA topoisomerase III, putative [Candida dubliniensis CD36]
gi|223642722|emb|CAX42976.1| DNA topoisomerase III, putative [Candida dubliniensis CD36]
Length = 630
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 109/217 (50%), Gaps = 3/217 (1%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FD 65
T + YG CQ PTLGF V RY ++ +F PE FW + + + W R FD
Sbjct: 204 TQVASYGTCQFPTLGFVVDRYKRVKNFIPEPFWHIEVETRKENKKTVFNWVRGHFFDKLY 263
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
V ++++ + I K++ RP L TV L K + + A++ AE+L
Sbjct: 264 VVMLYEQCCKSGEYGIISKIESKRKPNFRPFPLTTVELQKDCARFFKMSAKAALEAAEKL 323
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDH 184
Y QGF+SYPRTE+ + DFR L + WG Y LL++GY PRSG+ D H
Sbjct: 324 YNQGFLSYPRTETDRFAKETDFRSLLEVHKQDSRWGSYTTELLSQGYQVPRSGSHDDKAH 383
Query: 185 PPITPMRSATEDMLGK-DAWRLYSYVCQHFLGTVSPD 220
PPI P++ + D L + ++Y YV + F+ S D
Sbjct: 384 PPIHPIKYVSLDTLKSINEKKVYEYVVRRFIACCSKD 420
>gi|313216789|emb|CBY38031.1| unnamed protein product [Oikopleura dioica]
gi|313233526|emb|CBY09698.1| unnamed protein product [Oikopleura dioica]
Length = 933
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 5/220 (2%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKL 61
F A+ + ++ +G CQ PTLGF V+R+ I F+PEKFW + + + G W R +L
Sbjct: 197 FPALASRLVSFGSCQFPTLGFVVERWRSIEEFQPEKFWKIEVHHTRGGMNTLFTWSRVRL 256
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
F + + +V + K +SK RP L TV L K LG + M +
Sbjct: 257 FSQRAVVAIYDEIEESGRAKVTHLESKPKSKWRPFPLETVELEK-KGRMLGLTAKEIMSV 315
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE+LY +G+ISYPRTE+ +P S D R + A + + + +L G PR+G
Sbjct: 316 AEKLYLKGYISYPRTETNIFPKSLDLRPMVEAQQRDNRFTTFASDILQNGL-NPRNGKKT 374
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ HPPI P++ ++G +A +++ ++ + FL +S D
Sbjct: 375 DEAHPPIHPLKEGA-GLVGPEA-KVHEFISRRFLACLSRD 412
>gi|313212908|emb|CBY36814.1| unnamed protein product [Oikopleura dioica]
Length = 929
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 5/220 (2%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKL 61
F A+ + ++ +G CQ PTLGF V+R+ I F+PEKFW + + + G W R +L
Sbjct: 197 FPALASRLVSFGSCQFPTLGFVVERWRSIEEFQPEKFWKIEVHHTRGGMNTLFTWSRVRL 256
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
F + + +V + K +SK RP L TV L K LG + M +
Sbjct: 257 FSQRAVVAIYDEIEESGRAKVTHLESKPKSKWRPFPLETVELEK-KGRMLGLTAKEIMSV 315
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE+LY +G+ISYPRTE+ +P S D R + A + + + +L G PR+G
Sbjct: 316 AEKLYLKGYISYPRTETNIFPKSLDLRPMVEAQQRDNRFTTFASDILQNGL-NPRNGKKT 374
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ HPPI P++ ++G +A +++ ++ + FL +S D
Sbjct: 375 DEAHPPIHPLKEGA-GLVGPEA-KVHEFISRRFLACLSRD 412
>gi|119719794|ref|YP_920289.1| DNA topoisomerase [Thermofilum pendens Hrk 5]
gi|119524914|gb|ABL78286.1| DNA topoisomerase [Thermofilum pendens Hrk 5]
Length = 631
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 13/219 (5%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNG-YELKLEWERQKLFDFDVA 67
L YGPCQTP L V+R L+ FK +K++ L + Q G + +E Q+ +
Sbjct: 202 LSYGPCQTPVLYLVVKRELEREQFKKKKYYVLRVRFRSQEGVFTASATFEDQEKAKSALD 261
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRP-CGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
++ + V V+ +E +V P LNTV L AS L P+ + +AE+LY
Sbjct: 262 SVKRTGVG------VVVSAEFNAVEVEPPVPLNTVYLESRASLFLNLRPKETLSIAEKLY 315
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
+ G+ISYPRTE+T YP + + RG S G YV ++LA+G+ R D HPP
Sbjct: 316 SFGYISYPRTETTIYPPTLNLRGIASMFTRWEDAGWYVAKVLAKGFTPTRGREDDKAHPP 375
Query: 187 ITPMRSATEDML----GKDAWRLYSYVCQHFLGTVSPDC 221
I P RSA+ + + G+ AW++Y YV +HFL T+S +
Sbjct: 376 IYPTRSASREEITRRFGEKAWKVYEYVVRHFLATISENA 414
>gi|397641070|gb|EJK74455.1| hypothetical protein THAOC_03864, partial [Thalassiosira oceanica]
Length = 948
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 117/239 (48%), Gaps = 27/239 (11%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV---------------------- 46
++ YGPCQ PTLGF V+R+ +I +F E FW L +
Sbjct: 274 VISYGPCQFPTLGFVVERWARIQTFVKEDFWFLEMTIRLNADGSVVNNIPAQGVNNVYNN 333
Query: 47 -QNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLK 105
Q G + L W+R +L+D + ++ V D+S + ++K RP L TV L K
Sbjct: 334 QQQGRAISLTWKRVRLYDRTMTLAIYDACLEAGEAVVTDVSGRPKNKWRPIPLATVELQK 393
Query: 106 VASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSAL-ANNPVWGDYV 164
AS L G ++ MQ AE LY G+ISYPRTE+ + F+ + + A N G+Y
Sbjct: 394 RASKYLRIGSEVLMQKAESLYNNGYISYPRTETERFRPEFNHHDLIQSFHAVNGELGNYA 453
Query: 165 ERLLA-EGYAKPRSG-TDAGDHPPITPMRSATEDMLGKDAWR-LYSYVCQHFLGTVSPD 220
+ LL+ + PR+G D HPPITP ++ + + R +YS V +H+L S D
Sbjct: 454 QLLLSNNNFQNPRAGPNDDNAHPPITPAKAVNPEEIADPIERNIYSLVVKHYLACCSRD 512
>gi|296814980|ref|XP_002847827.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
gi|238840852|gb|EEQ30514.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
Length = 631
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 10/215 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YG CQ PTLGF V RY+++ +FKPE FW++ ++ + W+R LFD V
Sbjct: 219 IISYGSCQFPTLGFVVDRYMRVKNFKPEAFWSIKVSHTRDSITVNFNWQRGHLFDRAVVV 278
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + V +++K SK RP L TV+L + S L Q M LYT+
Sbjct: 279 VLFERCIAAKTATVTKVNKKPTSKWRPLPLTTVDLQMMGSKYLRMDSQAIMS-RRSLYTR 337
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GF YP TE+ + + D + + + +WG G+ +PR G + HPPI
Sbjct: 338 GFHQYPATETDQFDNEIDLKKLVEKQYPSDIWGG--------GFKQPRRGRNNDKAHPPI 389
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ +L D ++Y +V + FL S D K
Sbjct: 390 HPVAYVAPRVLKADEKKVYEFVARRFLACCSEDAK 424
>gi|169806308|ref|XP_001827899.1| DNA topoisomerase III [Enterocytozoon bieneusi H348]
gi|161779347|gb|EDQ31370.1| DNA topoisomerase III [Enterocytozoon bieneusi H348]
Length = 722
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 113/215 (52%), Gaps = 11/215 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YG CQ PTL F VQR+ +I SF PEKF+++ ++ E W R +FD +
Sbjct: 198 IISYGQCQIPTLNFVVQRHKEIVSFIPEKFYSIS--IINKSNEFL--WNRGHIFDKNCVL 253
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
F ++ + V DI + + K +P L TV L KV ++ M +AE+LY Q
Sbjct: 254 HFYNQLISANFI-VTDIIRENKVKYKPLPLRTVELQKVCTTYYKISSHEIMDIAEKLYNQ 312
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ISYPRTE+ +P++FDF + L N+ + +Y+E+ + PR+G + H PI
Sbjct: 313 GYISYPRTETDVFPNNFDFNRIIGKLRNDIQFKEYLEKFTLK---FPRNGNNNDQAHSPI 369
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ +ML +Y ++ + F+ + K
Sbjct: 370 YPLKDG--NMLKDKERNIYDFIARRFIACCDDNAK 402
>gi|403373519|gb|EJY86679.1| DNA topoisomerase [Oxytricha trifallax]
Length = 1033
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/171 (33%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
Query: 52 LKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSAL 111
++ +W R ++FD + + + + + V + K+++K++P LNT++ K+ S L
Sbjct: 369 IQFDWARYRIFDQQMCEILLENIQDGEVATVTKVISKRKTKIKPIPLNTIDFQKLVSRKL 428
Query: 112 GYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG 171
G AM++AE+LY +G+ISYPRTE+ +P + + + + L N +G Y +++L+
Sbjct: 429 RIGSHKAMEIAEKLYQRGYISYPRTETNIFP-AMNLQEIVKDLTKNTTFGGYAKKILSGN 487
Query: 172 -YAKPRSG-TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
Y PR G D HPPI P+++A + L D WR+Y +C+HFL +S D
Sbjct: 488 LYGTPRKGKQDDKAHPPIHPVKNANKMDLKHDEWRIYEIICKHFLACLSKD 538
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL 41
+L YGPCQ PTLGF V+R+ +++ F+PEK+WT+
Sbjct: 158 VLSYGPCQFPTLGFVVERFTKVSKFEPEKYWTI 190
>gi|20090640|ref|NP_616715.1| DNA topoisomerase [Methanosarcina acetivorans C2A]
gi|19915684|gb|AAM05195.1| DNA topoisomerase, type I [Methanosarcina acetivorans C2A]
Length = 843
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 103/216 (47%), Gaps = 5/216 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL GPCQTPT GF +R I +FK + FW + G + + + D + A
Sbjct: 193 ILSIGPCQTPTCGFVYEREKAIRAFKAKDFWKITAIFGAKGGDFEGTHRAGNIHDKEKAA 252
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
K + + V+ + K+ P LNT LK AS LG P++A+++AE+LY
Sbjct: 253 EIFKRLKGAKEGFVVKKTVKEAKTSPPNPLNTTEFLKRASKFLGISPEVALEVAEQLYLA 312
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
GF SYPRTE+ Y FDF+ L A + + E +L+ DA DHPPI
Sbjct: 313 GFTSYPRTETNKYADDFDFKTLLFDFARQKEYKPFAESILSAPIVPKNGDKDAHDHPPIH 372
Query: 189 PMRSATEDMLGK-----DAWRLYSYVCQHFLGTVSP 219
P+R A + + A +Y + +HFL + P
Sbjct: 373 PIRVAAKGEISAAVTIPHAAEVYDLIARHFLANLMP 408
>gi|452208804|ref|YP_007488918.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
gi|452098706|gb|AGF95646.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
Length = 832
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 105/217 (48%), Gaps = 7/217 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VA 67
+L GPCQTPT GF +R I +F+ + FW + G E + + D + A
Sbjct: 193 VLSIGPCQTPTCGFVYEREKAIRAFEAKDFWKITAVFAAKGGEFEGTHRAGNIHDKEKAA 252
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F++L L V+ + K+ P LNT LK AS LG P++A++ AE+LY
Sbjct: 253 EIFKRLKGAKEGL-VVKKTVKEAKTSPPNPLNTTEFLKRASKFLGISPEVALETAEQLYL 311
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
GF SYPRTE+ Y FDF+ + A + + E +L+ DA DHPPI
Sbjct: 312 AGFTSYPRTETNKYADDFDFKSLVFDFARQKEYKPFAESILSAPIVPKNGEKDAHDHPPI 371
Query: 188 TPMRSATEDMLGK-----DAWRLYSYVCQHFLGTVSP 219
P+R+A + A +Y + +HFL + P
Sbjct: 372 HPIRAAARGEVSSAVNIPQAAEVYDLIARHFLANLMP 408
>gi|21226285|ref|NP_632207.1| DNA topoisomerase III [Methanosarcina mazei Go1]
gi|20904529|gb|AAM29879.1| DNA topoisomerase III [Methanosarcina mazei Go1]
Length = 832
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 105/217 (48%), Gaps = 7/217 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VA 67
+L GPCQTPT GF +R I +F+ + FW + G E + + D + A
Sbjct: 193 VLSIGPCQTPTCGFVYEREKAIRAFEAKDFWKITAVFAAKGGEFEGTHRAGNIHDKEKAA 252
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+F++L L V+ + K+ P LNT LK AS LG P++A++ AE+LY
Sbjct: 253 EIFKRLKGAKEGL-VVKKTVKEAKTSPPNPLNTTEFLKRASKFLGISPEVALETAEQLYL 311
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
GF SYPRTE+ Y FDF+ + A + + E +L+ DA DHPPI
Sbjct: 312 AGFTSYPRTETNKYADDFDFKSLVFDFARQKEYKPFAESILSAPIVPKNGEKDAHDHPPI 371
Query: 188 TPMRSATEDMLGK-----DAWRLYSYVCQHFLGTVSP 219
P+R+A + A +Y + +HFL + P
Sbjct: 372 HPIRAAARGEVSSAVNIPQAAEVYDLIARHFLANLMP 408
>gi|71026270|ref|XP_762816.1| DNA topoisomerase III [Theileria parva strain Muguga]
gi|68349768|gb|EAN30533.1| DNA topoisomerase III, putative [Theileria parva]
Length = 531
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 104/216 (48%), Gaps = 40/216 (18%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL YG CQ PTLGF V+R++ I +F E FWT++ + + + W R+++FD
Sbjct: 160 ILSYGTCQLPTLGFVVERFILIENFISEPFWTINVEVTHDNIPVTFLWHRKRIFD----- 214
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+L+ +D S L MQLAE LY +
Sbjct: 215 ---ELMNKD-----------------------------VSRFLRISSHRCMQLAESLYNK 242
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAKPRSGTDAGD-HPP 186
G+ISYPRTE+ A+PSS + + + L++ P + Y LL E G+ +P G + + HPP
Sbjct: 243 GYISYPRTETNAFPSSINLKSIIHNLSSVPEFSQYTHNLLNEGGFKEPTKGKNNDEAHPP 302
Query: 187 ITPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDC 221
I P+ S T D + W LY Y+ + FL S D
Sbjct: 303 IHPVNSLTRDRAESEQHWLLYEYITRRFLACCSKDA 338
>gi|366991737|ref|XP_003675634.1| hypothetical protein NCAS_0C02780 [Naumovozyma castellii CBS 4309]
gi|342301499|emb|CCC69268.1| hypothetical protein NCAS_0C02780 [Naumovozyma castellii CBS 4309]
Length = 663
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 117/234 (50%), Gaps = 19/234 (8%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFD-F 64
+I+ YG CQ PTLGF V R+ +I +F E+FW + + G +W+R LFD
Sbjct: 235 VIVSYGACQFPTLGFVVDRFERIENFVSEEFWYIQLQIKNADTGDSTTFQWDRGHLFDRL 294
Query: 65 DVATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
V T ++ + +V+D+ K SK RP L TV L + + L + ++ AE
Sbjct: 295 SVLTFYESCIETAGDKAKVVDLKSKPTSKYRPLPLTTVELQRNCARFLRMNAKKSLAAAE 354
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALA-------NNPVWGDYVERLLA------E 170
+LY +GF+SYPRTE+ +P + D + + A N W Y E L++
Sbjct: 355 KLYQKGFVSYPRTETDTFPQNMDLKSLVEKQAQLDQPGNNKTAWASYAESLISESSSSNN 414
Query: 171 GYAKPRSGT-DAGDHPPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVSPDCK 222
+ PRSG+ D HPPI P+ + + L D R+Y Y+ +HFL S D K
Sbjct: 415 KFRFPRSGSHDDKAHPPIHPIVPVSGNANLNIDEKRVYEYIVRHFLACCSEDAK 468
>gi|336476470|ref|YP_004615611.1| DNA topoisomerase [Methanosalsum zhilinae DSM 4017]
gi|335929851|gb|AEH60392.1| DNA topoisomerase [Methanosalsum zhilinae DSM 4017]
Length = 772
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 9/217 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL GPCQ+PT GF +R I FKP FW + + K+F+ D A
Sbjct: 193 ILSVGPCQSPTCGFVYERERTIRDFKPTDFWKIEALFNSGETNFPGSHRKGKIFNKDEAM 252
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + + + K+ S P LNT LLK S+ LG P+ +++AE LY
Sbjct: 253 SVYRKIKDCSSGSICERNVKESSVNPPNPLNTNELLKRGSNFLGISPENTLKIAEDLYLA 312
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
GFISYPRTE+ Y F F + N + D V L G P++G D+ DHPPI
Sbjct: 313 GFISYPRTETNKYSKEFKFAEIIDEFRNGH-YNDCVS--LLPGDIHPKNGKKDSHDHPPI 369
Query: 188 TPMRSATEDMLGK-----DAWRLYSYVCQHFLGTVSP 219
P++SA++ + K D W +Y + +HF + P
Sbjct: 370 YPIKSASKKDVMKLSENPDYWNIYDLIVRHFFANLMP 406
>gi|257065031|ref|YP_003144703.1| topoisomerase IA [Slackia heliotrinireducens DSM 20476]
gi|256792684|gb|ACV23354.1| topoisomerase IA [Slackia heliotrinireducens DSM 20476]
Length = 837
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 2/207 (0%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL V+R + +F PE +W + + + + + A
Sbjct: 241 GRVQTPTLALIVERERERMAFVPEDYWVIKAKFSDGIEPFEATHKEGRFKTQEAADAVMN 300
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V + V I +++ + P NT L+ A++A G P M+LAE LY G+ S
Sbjct: 301 AVNGAQFGTVSGIEKRKRTVSAPTPFNTTGLM-AAAAAEGLSPARTMRLAESLYMAGYTS 359
Query: 133 YPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITPMR 191
YPR ++T YPSSFD + L+ P + Y +LLA+G P G ++ DHPPI PM+
Sbjct: 360 YPRVDNTVYPSSFDLPAMVKTLSEVPAYEPYCRQLLAKGTLTPTRGKQESTDHPPIVPMQ 419
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVS 218
+A+ D L W+LY+ + + FL T+S
Sbjct: 420 AASPDKLQPAEWKLYNLIARRFLATLS 446
>gi|18313747|ref|NP_560414.1| DNA topoisomerase (topA) [Pyrobaculum aerophilum str. IM2]
gi|18161303|gb|AAL64596.1| DNA topoisomerase (topA) [Pyrobaculum aerophilum str. IM2]
Length = 602
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 108/219 (49%), Gaps = 16/219 (7%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L YGPCQTP LG V R LQ +FKPEK++ + + ++++ D T
Sbjct: 195 LSYGPCQTPVLGIVVTRELQRRNFKPEKYYVIKAVVEIGSSKVEMSA------DAKFKTK 248
Query: 70 FQKLVMQDRILE-VIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + I V+ I+ + V P L TV L + AS LG + + +AE LY
Sbjct: 249 GEAEAIAATIKRGVVKIAVYKPHYVEPPEPLETVELERRASRWLGINSKKTLDIAEELYR 308
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
G+ISYPRTE+T YP + D + L L G Y LL +G+ R +D G HPPI
Sbjct: 309 AGYISYPRTETTIYPPTLDLKEVLEELTAGE-HGPYALELLRKGFKPTRGDSDDGAHPPI 367
Query: 188 TPMRSATEDML-------GKDAWRLYSYVCQHFLGTVSP 219
P + AT + G AW +Y V +HFL T+SP
Sbjct: 368 YPTKGATRAEIFKVFGKAGGHAWAVYDLVVRHFLATLSP 406
>gi|108804786|ref|YP_644723.1| DNA topoisomerase I [Rubrobacter xylanophilus DSM 9941]
gi|108766029|gb|ABG04911.1| DNA topoisomerase I [Rubrobacter xylanophilus DSM 9941]
Length = 702
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 108/219 (49%), Gaps = 4/219 (1%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+ L G Q+PTL +R L+ +F PE +W + L G R + +
Sbjct: 191 SAFLSVGRVQSPTLVLIAERELERRAFVPEPYWEVEARLQNGGGPFVARHARGRFKEEAE 250
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + + + + V ++ +++ ++ P NT L A++ +G P A ++AE LY
Sbjct: 251 ARRALENLSETAV--VTEVRQREATRPAPAPFNTTAFLTAAAN-IGVSPSRAARIAEDLY 307
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHP 185
T+G+ISYPRT++T YP S D R L LA GDY RLL G P G DHP
Sbjct: 308 TEGYISYPRTDNTVYPESLDLREVLGFLAEVEGVGDYAGRLLGAGRLTPTRGRRQTTDHP 367
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
PI P A+ L +D W++Y V + FL T+S K +
Sbjct: 368 PIYPTGRASRAELREDQWKIYQLVVRRFLATLSGPAKTL 406
>gi|448731889|ref|ZP_21714172.1| DNA topoisomerase I [Halococcus salifodinae DSM 8989]
gi|445805167|gb|EMA55390.1| DNA topoisomerase I [Halococcus salifodinae DSM 8989]
Length = 836
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 77/217 (35%), Positives = 110/217 (50%), Gaps = 15/217 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F P+ +W L L +N + ++ E ++++D D
Sbjct: 192 GRVQSPTLKLIVDREREIEAFDPDDYWELFCDLTKNEATFEAQYFYDDDGSEAERVWDGD 251
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
VA + V ++ + + P NT ++ ASS LGY Q AM LAE L
Sbjct: 252 VAEAVYDDLRGASTAAVEEVRRRTRTDDPPAPFNTTQYIRAASS-LGYSAQRAMSLAESL 310
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
YT G+I+YPRT++T YP D LS ++P +GD + LL EG P G + DH
Sbjct: 311 YTAGYITYPRTDNTVYPDDLDVAELLSEFTDHPEFGDDADTLL-EGEPTPTEGDEETTDH 369
Query: 185 PPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
PPI P + SATE LG D +Y V + F TV+
Sbjct: 370 PPIHPTGELPSATE--LGDDERAVYELVVRRFFATVA 404
>gi|410669965|ref|YP_006922336.1| DNA topoisomerase [Methanolobus psychrophilus R15]
gi|409169093|gb|AFV22968.1| DNA topoisomerase [Methanolobus psychrophilus R15]
Length = 774
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 106/215 (49%), Gaps = 7/215 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ GPCQTPT GF +R I FK + FW + + + + D A
Sbjct: 193 IISIGPCQTPTCGFVYEREKLILDFKSKDFWKIEGTFSHSNIDFTGTHRSGHIHDKAKAD 252
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + S K+ P LNT LK AS LG P+ A+++AE+LY
Sbjct: 253 EIFSRIKGSKTGILAKKSVKESITSPPYPLNTTEFLKRASKFLGISPENALEIAEQLYLS 312
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPI 187
GF SYPRTE+ Y FDF+ + A+ + +Y +L+ R+GT D DHPPI
Sbjct: 313 GFTSYPRTETNKYADDFDFKMKVLGFASGE-YREYAMAILSRLPITCRNGTRDGHDHPPI 371
Query: 188 TPMRSATEDMLGK-----DAWRLYSYVCQHFLGTV 217
P+R+AT+ + K DAW++Y V +HFL +
Sbjct: 372 HPIRAATKADVEKSVRMPDAWKVYDLVARHFLANL 406
>gi|397781506|ref|YP_006545979.1| DNA topoisomerase I [Methanoculleus bourgensis MS2]
gi|396940008|emb|CCJ37263.1| DNA topoisomerase I [Methanoculleus bourgensis MS2]
Length = 931
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 9/218 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL G Q+PTL V R +I +F P+ +W L + ++ + D + A
Sbjct: 190 ILSVGRVQSPTLAMIVNREREIENFVPQTYWMLSLMTEKEEQPVEARHTAGRFTDHEAAL 249
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + L V D+ E Q++ P +T + VA+S LG AM+LAE LY
Sbjct: 250 AAEAGTKEP--LVVTDVKEGQKNDRAPAPFDTTTFI-VAASRLGLSAANAMRLAEDLYMN 306
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP---RSGTDAGDHP 185
G+ISYPRT++T YP S D L L D + +P R ++ DHP
Sbjct: 307 GYISYPRTDNTVYPKSLDLNAILDTLRGGVFDADIA---WVRQHRRPVPTRGKKESTDHP 363
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PI P +AT + LG+D W++Y + + FL T+SPD +
Sbjct: 364 PIHPTGAATREALGQDRWKVYELIVRRFLATLSPDATW 401
>gi|116753908|ref|YP_843026.1| DNA topoisomerase I [Methanosaeta thermophila PT]
gi|116665359|gb|ABK14386.1| DNA topoisomerase I [Methanosaeta thermophila PT]
Length = 744
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 11/214 (5%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VAT 68
L G Q+PTL V R +I SF+P+ +W ++ L + +++ + +++ D V
Sbjct: 188 LSVGRVQSPTLALIVDREKEIESFQPKPYWEIYADLEKG---IRVRHSKSRIWTRDEVDR 244
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ L + V IS+ + P +T + + ASS +G+ AM++AE LYT
Sbjct: 245 ILNSL---SDVARVRSISKGERRDRPPTPFDTTSFISAASS-IGFTAANAMRIAESLYTN 300
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA-GDHPPI 187
G+ISYPRT++T YP S D R L L++ P D +E L +G P G + DHPPI
Sbjct: 301 GYISYPRTDNTVYPPSIDLRSLLEMLSSGPFREDALE--LMKGSITPTKGKRSTTDHPPI 358
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P A +D L +D W++Y V + F T+S +C
Sbjct: 359 YPTSVADKDDLKEDQWKIYELVVRRFFATLSGEC 392
>gi|219122509|ref|XP_002181586.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406862|gb|EEC46800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1009
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 117/237 (49%), Gaps = 25/237 (10%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL---------------------VQ 47
++ YGPCQ PTLGF V+R+ +I +F PE FW L + Q
Sbjct: 265 VISYGPCQFPTLGFVVERWARIETFIPEDFWHLELAISVDDTYHQQSQEEDQSAARGRTQ 324
Query: 48 NGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVA 107
+ W+R L+D + T+ + ++ V ++ + +K RP L TV L K A
Sbjct: 325 QNRTIHFSWKRGYLYDKLLTTVLFEECLEAGEAVVTAMNGRTRNKWRPVPLATVELQKRA 384
Query: 108 SSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALAN-NPVWGDYVER 166
S L G + M AE LY QG+ISYPRTE+ + F+ R + ++ +G Y +
Sbjct: 385 SMYLRIGSETLMSAAEELYQQGYISYPRTETERFRPEFEHRPLIQQFSSLQGEFGAYASK 444
Query: 167 LLAE-GYAKPRSG-TDAGDHPPITPMRSATEDMLGKDAWR-LYSYVCQHFLGTVSPD 220
LL E G+ PR+G +D HPPITP ++ + + R +YS + +H+L S D
Sbjct: 445 LLNENGFQIPRAGKSDDQAHPPITPAKAVDPNTIQDQIQRKIYSLIVKHYLACCSRD 501
>gi|47211975|emb|CAF95297.1| unnamed protein product [Tetraodon nigroviridis]
Length = 984
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 4/171 (2%)
Query: 52 LKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSAL 111
++ W+R +LF+ + ++ M++ I V ++ K +SK RP L+TV L K+AS L
Sbjct: 199 VEFSWKRNRLFNHTACLVLYQICMENPIATVTSVTSKPKSKWRPLPLDTVELEKLASRKL 258
Query: 112 GYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE- 170
+ M++AE+LYTQGFISYPRTE+ +P + + + VWG + +R+L +
Sbjct: 259 KISAKETMKIAEKLYTQGFISYPRTETNIFPKTLALGSLVEEQTQSSVWGTFAQRVLDQP 318
Query: 171 GYAKPRSGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
G PR G + HPPI P R ++ L + RLY ++ +HFL VS D
Sbjct: 319 GGPSPRQGKKSDQAHPPIHPTRHSSS--LQGNEGRLYEFIVRHFLACVSQD 367
>gi|355575535|ref|ZP_09045005.1| hypothetical protein HMPREF1008_00982 [Olsenella sp. oral taxon 809
str. F0356]
gi|354817547|gb|EHF02052.1| hypothetical protein HMPREF1008_00982 [Olsenella sp. oral taxon 809
str. F0356]
Length = 845
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 101/211 (47%), Gaps = 7/211 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG-----YELKLEWERQKLFDFDVA 67
G QTPTL V++ + +F PE +W + L G K+ + D A
Sbjct: 241 GRVQTPTLALVVEKEREREAFVPEDYWVISGQLAPQGDVDEDARFKVSHATARFKDEAAA 300
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ V R V + +K + P NT +L + A++A G P M+LAE LY
Sbjct: 301 KAAFERVRDAREATVTKVEKKSHTTRPPAPFNTTSL-QAAAAAEGISPARTMRLAEGLYM 359
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
G ISYPR ++T YP S D R + AL+ P + RLLA G P G + DHPP
Sbjct: 360 DGLISYPRVDNTVYPKSLDLREVVEALSAVPQYRPTCSRLLAGGPLHPTRGKQETTDHPP 419
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTV 217
I P +A D L AWRLY+ + + FL T+
Sbjct: 420 IYPTAAADPDRLEGPAWRLYNLIARRFLATL 450
>gi|335438421|ref|ZP_08561165.1| DNA topoisomerase I [Halorhabdus tiamatea SARL4B]
gi|334892042|gb|EGM30286.1| DNA topoisomerase I [Halorhabdus tiamatea SARL4B]
Length = 844
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 108/215 (50%), Gaps = 10/215 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F PE +W + L ++G + ++ E +++++
Sbjct: 190 GRVQSPTLKLIVDREREIQAFDPEDYWEIVADLAKDGQGFEAQYFYDDDGSEAERVWEES 249
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + + V ++ + + P NT + ASS LGY Q AM LAE L
Sbjct: 250 AAEAAYADLAESGTATVTEVRRRTRTDDPPAPFNTTAFISAASS-LGYSAQRAMSLAEEL 308
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDH 184
YT G+++YPRT++T YP D L A + +GD E LLA+ +P R ++ DH
Sbjct: 309 YTDGYLTYPRTDNTVYPEDLDPAELLGAFEGSYEFGDDAESLLAQEEIEPTRGDNESTDH 368
Query: 185 PPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVS 218
PPI P + D +G DAW +Y V + F TV+
Sbjct: 369 PPIHPTGELPDRDEIGADAWEIYELVVRRFFATVA 403
>gi|392593523|gb|EIW82848.1| prokaryotic type I DNA topoisomerase [Coniophora puteana RWD-64-598
SS2]
Length = 717
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 17/224 (7%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN--GY--ELKLEWERQK 60
V ++ YGPCQ PTLGF V RY + +F E FW + L + G+ E W R
Sbjct: 196 AVEGVVSYGPCQFPTLGFVVARYCEARAFTEEPFWYITLLLTRQVGGHPKETAFSWRRNH 255
Query: 61 LFDFD-VATMFQKLVMQDRI-LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
LF+FD V ++++++ D + +++K K +P L TV L K S L P+
Sbjct: 256 LFNFDDVFVIYERIMAIDNARARITKVTKKTTKKYKPLPLTTVELQKAGSRLLKLAPKKV 315
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG 178
+ +AE+LY GF+SYPRTE+ Y FDF + + WG +A+ +
Sbjct: 316 LDVAEKLYQDGFLSYPRTETDQYDPQFDFMALIEKQTADSAWGT---------FARGKGK 366
Query: 179 TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P A L D ++Y Y+ + FL + S D +
Sbjct: 367 HNDKAHPPIHPTAHAAN--LTGDQKKVYEYITRRFLASCSKDAE 408
>gi|300711966|ref|YP_003737780.1| DNA topoisomerase [Halalkalicoccus jeotgali B3]
gi|448295656|ref|ZP_21485720.1| DNA topoisomerase I [Halalkalicoccus jeotgali B3]
gi|299125649|gb|ADJ15988.1| DNA topoisomerase [Halalkalicoccus jeotgali B3]
gi|445583755|gb|ELY38084.1| DNA topoisomerase I [Halalkalicoccus jeotgali B3]
Length = 853
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 11/221 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G QTPTL V R +I +F PE +W + LV+ ++ E ++++D
Sbjct: 191 GRVQTPTLKLIVDREREIEAFDPEAYWEIFANLVKGEESFDAQYFYRDEDGNEAERVWDG 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A + + + V +S + + P NT ++ ASS +GY + AM +AE
Sbjct: 251 QRAEAVYETLREASEARVESVSRRTRTDAPPAPFNTTQFIRAASS-IGYSAKRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP D R L A N +G+ E LL P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPEDLDPRELLDAFTGNRTFGEDAETLLEREEITPTEGDEETTD 369
Query: 184 HPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
HPPI P T+ L W +Y V + F TV+ ++
Sbjct: 370 HPPIHPTEELPTKGELSDAEWEVYELVVRRFFATVADSARW 410
>gi|294495850|ref|YP_003542343.1| DNA topoisomerase I [Methanohalophilus mahii DSM 5219]
gi|292666849|gb|ADE36698.1| DNA topoisomerase I [Methanohalophilus mahii DSM 5219]
Length = 737
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 117/215 (54%), Gaps = 5/215 (2%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+PTL V R + +F P +W ++ L +NG K+ + + ++ + A
Sbjct: 191 LSVGRVQSPTLALIVDREKEREAFVPTPYWEIYVDLSKNGEIFKIRHKNTRFWEKEEANR 250
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+L+ + ++ ++ S K++ P NT ++ A+S +G+ P AM++AE LYT G
Sbjct: 251 VFRLIGNEALVSSLETSTKEDKP--PTPFNTTEFIRAANS-IGFTPANAMRIAESLYTNG 307
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPIT 188
+ISYPRT++T YPS+ D R + + + +Y ++LLA+ KP G + DHPPI
Sbjct: 308 YISYPRTDNTVYPSTIDLREQIEMFSKGH-FSEYAKKLLAKKELKPTKGKKETTDHPPIF 366
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P A + L +D W+LY V + F T + + ++
Sbjct: 367 PASVAKKAQLKEDEWKLYELVVRRFFATFAENAEW 401
>gi|308234129|ref|ZP_07664866.1| DNA topoisomerase I [Atopobium vaginae DSM 15829]
gi|328943646|ref|ZP_08241111.1| DNA topoisomerase TopA [Atopobium vaginae DSM 15829]
gi|327491615|gb|EGF23389.1| DNA topoisomerase TopA [Atopobium vaginae DSM 15829]
Length = 862
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 103/212 (48%), Gaps = 7/212 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-----VQNGYELKLEWERQKLFDFDVA 67
G QTPTL V++ + +F PE +W + L + K + D + A
Sbjct: 241 GRVQTPTLALVVEKERERNAFVPEDYWVISGMLSVTPDASADEKFKTTHAIARFKDKEQA 300
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
T V R V +I EK + P NT +L + A++A G P M+LAE LY
Sbjct: 301 TAAFNRVRNARSATVEEIEEKSRTTRPPAPFNTTSL-QAAAAAEGITPARTMRLAESLYM 359
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+G ISYPR ++T YPSS + R + LA+ P + Y LL++ P G DHPP
Sbjct: 360 EGLISYPRVDNTVYPSSLNLRACVKNLAHVPQYRPYCNELLSQEKLTPTRGKQQTTDHPP 419
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
I P +A L AW+LY+ + + FL T+S
Sbjct: 420 IYPTAAADPTKLDAAAWKLYNLIARRFLATLS 451
>gi|257053792|ref|YP_003131625.1| DNA topoisomerase I [Halorhabdus utahensis DSM 12940]
gi|256692555|gb|ACV12892.1| DNA topoisomerase I [Halorhabdus utahensis DSM 12940]
Length = 844
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 10/215 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F P+ +W + L ++G + ++ E ++++D
Sbjct: 190 GRVQSPTLKLIVDREREIEAFDPDDYWEILADLAKDGQGFEAQYFYDDDGSEAERVWDEA 249
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + + V ++ + + P NT + ASS LGY Q AM LAE L
Sbjct: 250 AAEAAYADLSESGTATVTEVRRRTRTDDPPAPFNTTAFISAASS-LGYSAQRAMSLAEEL 308
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
YT G+++YPRT++T YP D L A + +GD LL + +P G T++ DH
Sbjct: 309 YTDGYLTYPRTDNTVYPDDLDPEELLGAFEGSYEFGDDAASLLDQDEIEPTRGETESTDH 368
Query: 185 PPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVS 218
PPI P + D +G DAW +Y V + F TV+
Sbjct: 369 PPIHPTGELPDRDEVGADAWEIYELVVRRFFATVA 403
>gi|221195634|ref|ZP_03568688.1| DNA topoisomerase 1 [Atopobium rimae ATCC 49626]
gi|221184400|gb|EEE16793.1| DNA topoisomerase 1 [Atopobium rimae ATCC 49626]
Length = 842
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 106/210 (50%), Gaps = 6/210 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLH----PYLVQNGYELKLEWERQKLFDFDVAT 68
G QTPTL V+R + +F PE +W + P + K+ + ++ + A
Sbjct: 241 GRVQTPTLALVVERERERLAFTPEDYWVISGEATPLEDNSDATFKITHATSRFWNKEEAD 300
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
V + V+ I K + P NT +L + A+++ G P M+LAE LY
Sbjct: 301 AVFDAVKEQHQATVVRIESKSRKQQPPAPFNTTSL-QAAAASEGLSPARTMRLAESLYMD 359
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDAGDHPPI 187
G ISYPR ++T YPSS D +G + L++ P + + LLA G + R ++ DHPPI
Sbjct: 360 GLISYPRVDNTVYPSSLDLKGCVRTLSSVPQYAGVCKTLLAAGKLSATRGKQESTDHPPI 419
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTV 217
P +A ++ L AW+LY+ + + FL T+
Sbjct: 420 YPTAAADQNKLQPAAWKLYNLIARRFLATL 449
>gi|313127266|ref|YP_004037536.1| DNA topoisomerase i [Halogeometricum borinquense DSM 11551]
gi|448288260|ref|ZP_21479461.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
gi|312293631|gb|ADQ68091.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
gi|445570299|gb|ELY24865.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
Length = 850
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 106/221 (47%), Gaps = 11/221 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q PTL V R +I +F PE +W L L ++ + ++ E ++++D
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPEDYWELFADLQKDSESFEAQYFYLDEDGNEAERVWDG 254
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
D A + + V + + + P NT ++ A S LGY Q AM +AE
Sbjct: 255 DDAEEAYETLRNVEAATVDSVRRRTRTDDPPAPFNTTQFIRAAGS-LGYSAQRAMSIAED 313
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP D R L A N +GD + LL + +P +G + D
Sbjct: 314 LYTAGYITYPRTDNTVYPEDLDPRELLDAFTANRTFGDDAQNLLEQEEIEPTAGDNETTD 373
Query: 184 HPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
HPPI P + L +D W +Y V + F TV+ K+
Sbjct: 374 HPPIHPTGELPSRSDLTEDEWDVYELVVRRFFATVAESAKW 414
>gi|448412916|ref|ZP_21576807.1| DNA topoisomerase I [Halosimplex carlsbadense 2-9-1]
gi|445667618|gb|ELZ20259.1| DNA topoisomerase I [Halosimplex carlsbadense 2-9-1]
Length = 863
Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 10/215 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F PE +W L L ++G + ++ E ++++D
Sbjct: 190 GRVQSPTLKLIVDREREIQAFDPEDYWELFADLAKDGETFEAQYFYDDDGSEAERVWDEA 249
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + + + EV + + + P NT + A S LGY Q AM +AE L
Sbjct: 250 DADEAHERLREATSAEVTSVRRRTRTDNPPAPFNTTAFISAAGS-LGYSAQRAMSIAEEL 308
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTD-AGDH 184
YT G+I+YPRT++T YP D L +GD E LL +P G D DH
Sbjct: 309 YTTGYITYPRTDNTVYPEDLDPEELLDEFTMTHEFGDDAESLLERDEIEPTEGDDETTDH 368
Query: 185 PPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVS 218
PPI P + + D L +D W +Y V + F TV+
Sbjct: 369 PPIHPTGAVPDRDELDEDEWEVYELVVRRFFATVA 403
>gi|321258468|ref|XP_003193955.1| DNA topoisomerase type I [Cryptococcus gattii WM276]
gi|317460425|gb|ADV22168.1| DNA topoisomerase type I, putative [Cryptococcus gattii WM276]
Length = 923
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 8/220 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-----LKLEWERQKLFD 63
++ YGPCQ PTLGF V +Y ++ +F PE FW + L + + ++ W+R LFD
Sbjct: 209 LISYGPCQFPTLGFVVDQYNRVQAFVPEMFWYIFVALEREHEDGEPNTVEFRWKRNHLFD 268
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
D+A + + + V+ + K +K +P L TV L + S L P+ + LAE
Sbjct: 269 LDLAALLYEQCTINPQARVLKVESKPATKWKPLPLTTVELQQSGSRLLHMTPKRILDLAE 328
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
+LY +G +SYPRTE+ Y FDF + + WG Y ++LL + KPR+G +
Sbjct: 329 KLYQRGIVSYPRTETDQYDPKFDFNSLIQKQTLDNQWGAYAQKLLDGAFQKPRNGRKNDK 388
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P +A L D R++ + + FL + S + +
Sbjct: 389 AHPPIHP--TAHAGNLDGDERRVFELITRRFLASCSTNAE 426
>gi|336476645|ref|YP_004615786.1| DNA topoisomerase I [Methanosalsum zhilinae DSM 4017]
gi|335930026|gb|AEH60567.1| DNA topoisomerase I [Methanosalsum zhilinae DSM 4017]
Length = 762
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 109/219 (49%), Gaps = 4/219 (1%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFDFD 65
+ L G Q+PTL V R + F P+ +W + L +N E+ + + +D D
Sbjct: 188 NMFLSVGRVQSPTLAIIVDREKERDEFVPKPYWEIDALLEDKNKNEVLASHSKGRFWDKD 247
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + V + R V I + ++ P NT L+ ASS +G+ AM++AE L
Sbjct: 248 EADTVMEKVNKARKAVVSQIRKSSKTDKPPTPFNTTELISAASS-IGFTASNAMRIAESL 306
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDH 184
YT G+ISYPRT++T YP+S D R + ++ ++ +Y LL + P R ++ DH
Sbjct: 307 YTNGYISYPRTDNTVYPASLDLRAQIEIFSSG-IFKEYANELLKKKELIPTRGKKESTDH 365
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PPI P A + L + W+LY V + F T + ++
Sbjct: 366 PPIYPASYAKKSELNEQEWKLYELVVRRFFATFAEPARW 404
>gi|91772728|ref|YP_565420.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
gi|91711743|gb|ABE51670.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
Length = 780
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 108/221 (48%), Gaps = 15/221 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VA 67
+L GPCQTPT GF +R L I F FW + G ++ ++D + A
Sbjct: 193 VLSIGPCQTPTCGFVYERELAIRKFDSRDFWKIEGVFTGKGADIIGVHRGGHIYDKEKAA 252
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVR---PCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+F+KL + + IS+K ++ P LNT LK AS LG P A+++AE+
Sbjct: 253 AIFKKL----KGCKTAVISKKTVKEMNTNPPFPLNTNEFLKRASKYLGVSPDQALEIAEQ 308
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LY GF SYPRTE+ Y DF L + D+ LL++ PR+G D D
Sbjct: 309 LYLSGFTSYPRTETNMYADDMDFASILKGFTKGD-YQDFALLLLSQKAIVPRNGKKDGHD 367
Query: 184 HPPITPMRSATEDMLGK-----DAWRLYSYVCQHFLGTVSP 219
HPPI P+++ + + + AW +Y + +HF+ + P
Sbjct: 368 HPPIHPIKAGSRMEVERAIKMPRAWDVYDLIVRHFIANLLP 408
>gi|297272081|ref|XP_001095437.2| PREDICTED: DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 976
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 29/224 (12%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M++ L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEE-------------------------LEKLASRKLRINAKETM 323
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 324 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 383
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 384 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 425
>gi|426349252|ref|XP_004042226.1| PREDICTED: DNA topoisomerase 3-alpha [Gorilla gorilla gorilla]
Length = 976
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 29/224 (12%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M++ L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEE-------------------------LEKLASRKLRINAKETM 323
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 324 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 383
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + + L D RLY ++ +HFL S D +
Sbjct: 384 KSDQAHPPIHPTKYT--NSLQGDEQRLYEFIVRHFLACCSQDAQ 425
>gi|269986154|gb|EEZ92467.1| DNA topoisomerase type IA central domain protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 703
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 116/214 (54%), Gaps = 6/214 (2%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G QTPTL V R + +FKPEK+W + E E++ K+FD A
Sbjct: 213 LSIGRVQTPTLAIIVARDSERRAFKPEKYWRFTATIQTKDAEFLAEYKDGKVFDEKTAEK 272
Query: 70 FQKLVMQDR-ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+K + + +++ +D+ +++ +P NT L+ A+ A+G+ AM++ + LY +
Sbjct: 273 LRKTKNEKKAVIDKVDMKKRRMPPPKP--FNTTAFLRSAA-AIGFSVPNAMRIVQGLYMK 329
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G++SYPRT+S AYP + D + L+ L N+ + V +L + P G +A DHPPI
Sbjct: 330 GYVSYPRTDSEAYPPTLDLKEILNELRNSSSYSKAVSEILKKPL-NPTKGKEAKDHPPIH 388
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ E + ++A R++ + + FL T+S + +
Sbjct: 389 PVKLPNEKLNPQEA-RIFDLISRRFLATLSDESE 421
>gi|322369955|ref|ZP_08044517.1| DNA topoisomerase [Haladaptatus paucihalophilus DX253]
gi|320550291|gb|EFW91943.1| DNA topoisomerase [Haladaptatus paucihalophilus DX253]
Length = 858
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 107/221 (48%), Gaps = 11/221 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F PE++W + L ++ + ++ E ++++D
Sbjct: 191 GRVQSPTLKLIVDREREIQAFDPEEYWEMFADLQKDDEAFESQYFYRDEDGNEAERVWDE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ A + + V +S + + P NT ++ A S LGY Q AM +AE
Sbjct: 251 ETAEKAYETLESATQATVDSVSRRTRTDTPPAPFNTTQFIRAAGS-LGYSAQRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGD 183
LYT G+I+YPRT++T YP D L N +GD + LL + +P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEELLDTFVGNYHFGDDADGLLEQDDIEPTEGDEETTD 369
Query: 184 HPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
HPPI P T+ LG D W +Y V + F TV+ K+
Sbjct: 370 HPPIHPTEDIPTKGELGDDEWDVYELVVRRFFATVAESAKW 410
>gi|402828130|ref|ZP_10877021.1| DNA topoisomerase I [Slackia sp. CM382]
gi|402286731|gb|EJU35193.1| DNA topoisomerase I [Slackia sp. CM382]
Length = 836
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 100/207 (48%), Gaps = 2/207 (0%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL V R + +F PE +W + E + + ++++ D A
Sbjct: 238 GRVQTPTLALIVARERERMAFVPEDYWVVKGLFADGADEFEATYAQKRISDKAQADAVMA 297
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V V I +++ + P NT +L+ A++ G P M+LAE LY G IS
Sbjct: 298 HVEGVDSARVSAIEKRRRTIAPPAPFNTTSLMAAAANE-GLSPARTMRLAESLYMAGIIS 356
Query: 133 YPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDAGDHPPITPMR 191
YPR ++T YP S D + L+ P + Y ++LL++G + R + DHPPI P
Sbjct: 357 YPRVDNTVYPDSLDLADVVRVLSKVPAYAPYCQKLLSKGALSATRGKQETTDHPPIYPTA 416
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVS 218
A D L W+LY+ + + FL T+S
Sbjct: 417 PADPDSLDPAQWKLYNLIARRFLATLS 443
>gi|219851924|ref|YP_002466356.1| DNA topoisomerase type IA central domain-containing protein
[Methanosphaerula palustris E1-9c]
gi|219546183|gb|ACL16633.1| DNA topoisomerase type IA central domain protein [Methanosphaerula
palustris E1-9c]
Length = 938
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 5/217 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL G Q+PTL V R +I +F PE +W L ++G + + D +A
Sbjct: 190 ILSVGRVQSPTLAMMVDREKEIEAFVPEPYWVLTVDSNKDGEPVLARHTTARFTDVAIAE 249
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
++ L V ++ E + P +T + VA+ LG+ AM++AE LY
Sbjct: 250 EAKEATRAP--LMVTEVKEGSKVDRAPTPFDTTGFI-VAAGRLGFSAANAMRIAEDLYMH 306
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA-GDHPPI 187
G+ISYPRT++T YP S D G L L + V ++A P G + DHPPI
Sbjct: 307 GYISYPRTDNTIYPRSLDLNGVLKTLQKTEL-SSAVIWVMANRRPVPTQGKKSTTDHPPI 365
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
P +AT LG + W++Y V + FL T+SPD +++
Sbjct: 366 HPSGAATRAELGDERWKIYELVVRRFLATLSPDARWM 402
>gi|298674647|ref|YP_003726397.1| DNA topoisomerase I [Methanohalobium evestigatum Z-7303]
gi|298287635|gb|ADI73601.1| DNA topoisomerase I [Methanohalobium evestigatum Z-7303]
Length = 742
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 4/218 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDV 66
+ L G Q+PTL V R + +F P+ +W ++ L NG E + + Q+ +D +
Sbjct: 190 MFLSVGRVQSPTLALIVDREKEREAFVPDPYWEVYATLANSNGEEFVTQHKTQRFWDKNQ 249
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ + EV + + + P NT + A+S +G+ AM++AE LY
Sbjct: 250 VNSVVDKLKDCKTAEVTSVEKSTKQDKPPSPFNTTEFISAANS-VGFTASNAMRIAETLY 308
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDHP 185
T G+ISYPRT++T YP S D R L A+ + + Y + LL + P R + DHP
Sbjct: 309 TNGYISYPRTDNTVYPDSLDLRN-LIAMFKSGQFKQYAQYLLNKSNLVPTRGKKETQDHP 367
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PI P +A + L +D W++Y V + F T + K+
Sbjct: 368 PIYPTSAAKKSELNEDEWKIYEMVVRRFFATFADPAKW 405
>gi|383320605|ref|YP_005381446.1| DNA topoisomerase I [Methanocella conradii HZ254]
gi|379321975|gb|AFD00928.1| DNA topoisomerase I [Methanocella conradii HZ254]
Length = 700
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 112/217 (51%), Gaps = 8/217 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G QTP L V R +I +F + +W L L++ G E + ++ FD M
Sbjct: 206 LSVGRVQTPLLAIIVDREKEIQAFVSKPYWELAAVLLK-GAEAFMARHKKGRFDNKEEAM 264
Query: 70 --FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
++KL + ++ S+K+ + P +T LLK A+SA+G+ AMQ AE LY
Sbjct: 265 AIYKKLGKAATVKSILRESKKEPA---PTPFSTTELLK-AASAIGFSAAGAMQAAEELYI 320
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPP 186
G ISYPRT++T YP + D R + +P + LLA+ P G ++ DHPP
Sbjct: 321 NGRISYPRTDNTVYPPTLDLRQAVGLFKASPEFAQSALELLAQRSLVPTKGKVESKDHPP 380
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
I P+ A++ + + W+LY V + F T+SP C++
Sbjct: 381 IYPVACASKAQMDERHWKLYELVVRRFFATLSPPCEW 417
>gi|146104103|ref|XP_001469727.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
gi|134074097|emb|CAM72839.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
Length = 947
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 125/232 (53%), Gaps = 26/232 (11%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A + +L +GPCQ PTLGF V+RY Q F PE F+TL +Q+G + K R ++D
Sbjct: 195 AAIPGVLSFGPCQFPTLGFVVRRYWQQQGFVPEDFFTLQ---LQHG-DTKFHSSRGSMYD 250
Query: 64 FDVATMFQKLVMQDRILE-----VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
AT+ + ++Q E + ++ ++ + P L TV + K+A++ L +
Sbjct: 251 QVAATLIYEDMLQAAAAEGHKGRITNVQQRPSHRRPPVPLATVVMQKLAATHLRIPSERC 310
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLS----ALANNPVWGDYVERLLAE--GY 172
M LAE LY +G ISYPRTE+ +Y +F L +AN V +YV +LA+
Sbjct: 311 MTLAESLYQEGLISYPRTETDSY--TFQESELLELVRVQIANADV-AEYVAAMLADIATR 367
Query: 173 AKP--RSGTDAGDHPPITPMRS--ATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+P R G D HPPI P ++ AT+D G RLY+ + +HFL ++SPD
Sbjct: 368 VRPPLRGGHDDKAHPPIHPTKAWNATQDERG----RLYNLIVRHFLASLSPD 415
>gi|70952526|ref|XP_745425.1| DNA topoisomerase III [Plasmodium chabaudi chabaudi]
gi|56525744|emb|CAH76018.1| DNA topoisomerase III, putative [Plasmodium chabaudi chabaudi]
Length = 675
Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 2/173 (1%)
Query: 50 YELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASS 109
Y + W R KLFD + + ++++ + + +I EK+ K RP LNT+ + K+ S
Sbjct: 307 YVVDFTWSRLKLFDHLGVVLIYEDLLKNPLCRISNIFEKEVKKYRPFPLNTLQMTKLVSK 366
Query: 110 ALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA 169
+ M +AE+LY +G+ISYPRTE+ + S + R + L N ++G Y +L
Sbjct: 367 YFHISSKECMNIAEKLYNKGYISYPRTETNYFVDSMNLRKFIHELKKNNIFGSYAAKLAE 426
Query: 170 EGYAKPRSGT-DAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPD 220
G KPR G + HPPI P+++ + + + W++Y ++C+HFL S D
Sbjct: 427 NGSCKPRKGKLNDKAHPPIHPVKNMNKANNVDFKEWKIYEFICRHFLAVCSDD 479
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQN 48
T I+ YGPCQ PTLGF V RYLQI +F E +WT+ YL Q+
Sbjct: 204 TKIISYGPCQFPTLGFVVNRYLQIKNFNNEYYWTIKMGYLYQD 246
>gi|88602302|ref|YP_502480.1| DNA topoisomerase [Methanospirillum hungatei JF-1]
gi|88187764|gb|ABD40761.1| DNA topoisomerase I [Methanospirillum hungatei JF-1]
Length = 931
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 110/221 (49%), Gaps = 16/221 (7%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYEL-----KLEWERQKLFD 63
IL G Q+PTL V R +I SF PE +W + ++G + + + +KL D
Sbjct: 190 ILSVGRVQSPTLAMIVDREKEIESFIPEPYWEISLTTEKDGQSIIARHAEGRFTDKKLAD 249
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
A LV V ++ E + P +T + VA++ +GY AM++AE
Sbjct: 250 AAYAGTKDPLV-------VTEVKEGKRVDRAPTPFDTTQFI-VAAARIGYSAANAMRVAE 301
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG- 182
LY GFISYPRT++T YP S + L+ L D V + KP G +
Sbjct: 302 ELYMNGFISYPRTDNTIYPPSLNLDNILTTLEKTKFARD-VAWVRKNRRTKPTEGKKSST 360
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
DHPPI P ATE+ LG++ W+LY V + FL T+SPD ++
Sbjct: 361 DHPPIHPTGVATEEQLGEN-WKLYELVVRRFLATLSPDAEW 400
>gi|269217134|ref|ZP_06160988.1| DNA topoisomerase [Slackia exigua ATCC 700122]
gi|269129271|gb|EEZ60356.1| DNA topoisomerase [Slackia exigua ATCC 700122]
Length = 838
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 2/207 (0%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL V R + +F PE +W + E + + ++++ D A
Sbjct: 240 GRVQTPTLALIVARERERMAFVPEDYWVVKGLFADGADEFEATYAQKRISDKAQADAVMA 299
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ V I +++ + P NT +L+ A++ G P M+LAE LY G IS
Sbjct: 300 HIEGVDSARVSAIEKRRRTIAPPAPFNTTSLMAAAANE-GLSPARTMRLAESLYMAGIIS 358
Query: 133 YPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDAGDHPPITPMR 191
YPR ++T YP S D + L+ P + Y ++LL++G + R + DHPPI P
Sbjct: 359 YPRVDNTVYPDSLDLADVVRVLSKVPAYAPYCQKLLSKGALSATRGKQETTDHPPIYPTA 418
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVS 218
A D L W+LY+ + + FL T+S
Sbjct: 419 PADPDSLDPAQWKLYNLIARRFLATLS 445
>gi|398024578|ref|XP_003865450.1| DNA topoisomerase III, putative [Leishmania donovani]
gi|322503687|emb|CBZ38773.1| DNA topoisomerase III, putative [Leishmania donovani]
Length = 947
Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 125/232 (53%), Gaps = 26/232 (11%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A + +L +GPCQ PTLGF V+RY Q F PE F+TL +Q+G + K R ++D
Sbjct: 195 AAIPGVLSFGPCQFPTLGFVVRRYWQQQGFVPEDFFTLQ---LQHG-DTKFHSSRGSMYD 250
Query: 64 FDVATMFQKLVMQDRILE-----VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
AT+ + ++Q E + ++ ++ + P L TV + K+A++ L +
Sbjct: 251 QVAATLIYEDMLQAAAAEGHKGRITNVQQRPSHRRPPVPLATVVMQKLAATHLRIPSERC 310
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLS----ALANNPVWGDYVERLLAE--GY 172
M LAE LY +G ISYPRTE+ +Y +F L +AN V +YV +LA+
Sbjct: 311 MTLAESLYQEGLISYPRTETDSY--TFQESELLELVRVQIANADV-AEYVAAMLADIATR 367
Query: 173 AKP--RSGTDAGDHPPITPMRS--ATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+P R G D HPPI P ++ AT+D G RLY+ + +HFL ++SPD
Sbjct: 368 VRPPLRGGHDDKAHPPIHPTKAWNATQDERG----RLYNLIVRHFLASLSPD 415
>gi|68075963|ref|XP_679901.1| DNA topoisomerase III [Plasmodium berghei strain ANKA]
gi|56500744|emb|CAH93722.1| DNA topoisomerase III, putative [Plasmodium berghei]
Length = 674
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 2/180 (1%)
Query: 43 PYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVN 102
PY Y + W R KLFD + + ++++ + + +I EK+ K RP LNT+
Sbjct: 298 PYSSNTNYVVDFTWSRLKLFDHLGVVLIYEDLLKNPLCRISNIFEKEVKKYRPFPLNTLQ 357
Query: 103 LLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGD 162
+ K+ S + M +AE+LY++G+ISYPRTE+ + S + R + L N ++G+
Sbjct: 358 MTKLVSKYFHISSKECMNIAEKLYSKGYISYPRTETNYFVDSMNLRKIIHELKKNNIFGN 417
Query: 163 YVERLLAEGYAKPRSGT-DAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPD 220
Y +L + KP G + HPPI P+++ + + + W++Y ++C+HFL S D
Sbjct: 418 YATKLAEKNSCKPIKGKLNDKAHPPIHPVKNMNKANNVDFKEWKIYEFICRHFLAVCSDD 477
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQN 48
T I+ YGPCQ PTLGF V RYLQI +F E +WT+ YL Q+
Sbjct: 203 TKIISYGPCQFPTLGFVVNRYLQIKNFNNEYYWTIKMGYLYQD 245
>gi|303271853|ref|XP_003055288.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463262|gb|EEH60540.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 639
Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 109/225 (48%), Gaps = 17/225 (7%)
Query: 9 ILIYGPCQTPTLGFCVQR-YLQITSFKPEKFWTLHPYLVQ--NGYELKLEWERQKLFDFD 65
++ YGPCQ PTLGF VQR + Q S V G + W R++LFD
Sbjct: 214 VVSYGPCQFPTLGFIVQRKWDQARSPYTGGGGGGGAGAVNPDAGAAAEFAWARERLFDEG 273
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+A V RI V + ++ K P LNT+ + K + A P M++AE L
Sbjct: 274 LARTLFGFVQTARIATVTNEGGRETKKWPPVPLNTIEMQKRVNRACRISPAEVMKVAEEL 333
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA--EGYAKP-RSGTDAG 182
Y GFISYPRTE+ A+P FDF G + L N+ V+G + L A + P G D
Sbjct: 334 YNAGFISYPRTETDAFPKDFDFAGIIGPLTNHHVFGFHARALSAPSNRFRFPGNGGHDDN 393
Query: 183 DHPPITPMRSATEDMLGKDAWR---------LYSYVCQHFLGTVS 218
HPPI P + ATE DAWR +Y +V +HFL T S
Sbjct: 394 AHPPIYPTKLATE--RDYDAWRRDGKMNQIKIYDFVARHFLATCS 436
>gi|257790892|ref|YP_003181498.1| DNA topoisomerase type IA central domain-containing protein
[Eggerthella lenta DSM 2243]
gi|317488397|ref|ZP_07946951.1| DNA topoisomerase [Eggerthella sp. 1_3_56FAA]
gi|325830508|ref|ZP_08163961.1| DNA topoisomerase [Eggerthella sp. HGA1]
gi|257474789|gb|ACV55109.1| DNA topoisomerase type IA central domain protein [Eggerthella lenta
DSM 2243]
gi|316912501|gb|EFV34056.1| DNA topoisomerase [Eggerthella sp. 1_3_56FAA]
gi|325487417|gb|EGC89858.1| DNA topoisomerase [Eggerthella sp. HGA1]
Length = 849
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 100/207 (48%), Gaps = 2/207 (0%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL V R + +F PE +W + + + + A
Sbjct: 239 GRVQTPTLALVVARERERLAFVPEDYWVIRGAFGADPDSFEAPHATARFKAEAEAQAVMA 298
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V V + +K+ + P NT +L+ A+SA G P M++AE LY G+IS
Sbjct: 299 HVEGATRATVASVEKKKRTVQPPAPFNTTSLM-AAASAEGLSPARTMRIAESLYMDGYIS 357
Query: 133 YPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDAGDHPPITPMR 191
YPR ++T YPSS D T+ A++ NP + Y + LLA+G R + DHPPI P
Sbjct: 358 YPRVDNTVYPSSLDLADTVKAISGNPAYAPYCKELLAKGKLTATRGKKETTDHPPIYPTA 417
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVS 218
AT D L ++LY+ + + FL T+S
Sbjct: 418 KATPDDLAPADYKLYNLIARRFLATLS 444
>gi|388581731|gb|EIM22038.1| prokaryotic type I DNA topoisomerase [Wallemia sebi CBS 633.66]
Length = 797
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 101/224 (45%), Gaps = 44/224 (19%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELK-----LEWERQ 59
+ L + GPCQ PTLGF V +Y +I F E FW + ++ + K W+R
Sbjct: 202 IAELDVHTGPCQFPTLGFVVDQYQRIKDFISEAFWYIFVSIIHRDDDGKDSNVVFHWQRD 261
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LFD D++ + C +N
Sbjct: 262 RLFDPDLSFIL----------------------YEQCAINP--------------SARVT 285
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG- 178
++AE+LY +GF+SYPRTE+ Y SFDF + AN+ VWG Y L G+ KPR G
Sbjct: 286 KIAEKLYQKGFLSYPRTETDQYDPSFDFHSLIDKQANDGVWGSYARSLTDSGFDKPREGK 345
Query: 179 TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P A+ + G D R+Y Y+ + FL + S D K
Sbjct: 346 KNDKAHPPIHPTAHAS-GLTGNDK-RVYEYITRRFLASCSRDAK 387
>gi|405982831|ref|ZP_11041142.1| DNA topoisomerase I [Slackia piriformis YIT 12062]
gi|404389540|gb|EJZ84616.1| DNA topoisomerase I [Slackia piriformis YIT 12062]
Length = 846
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 8/210 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN--GYELKLEWERQKLFDFDVATMF 70
G QTPTL V R + +F PE +W + + +E R K A M
Sbjct: 240 GRVQTPTLALIVARERERMAFVPEDYWVIKARFGKEPEDFEATHAMARFKAEAQANAVMG 299
Query: 71 QKLVMQDRILEVIDISEKQESKVR-PCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
++D VI EK++ V P NT +L+ A+S G P M++AE LY G
Sbjct: 300 H---VEDASKGVISSIEKRKRTVAAPVPFNTTSLMAAAASE-GLSPARTMRIAESLYMDG 355
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDAGDHPPIT 188
+ISYPR ++T YP S D GT+ L++ V+ Y + LL++G R + DHPPI
Sbjct: 356 YISYPRVDNTVYPESLDLEGTVRKLSDVAVYRPYCQELLSKGALVATRGKKETTDHPPIH 415
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
P +A D LG W+LY+ + + FL T+S
Sbjct: 416 PTAAADPDKLGAPEWKLYNLIARRFLATLS 445
>gi|401420366|ref|XP_003874672.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490908|emb|CBZ26172.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 948
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 117/229 (51%), Gaps = 20/229 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A + +L +GPCQ PTLGF V+RY Q F PE F+TL +Q+G + K R ++D
Sbjct: 195 AAIPGVLSFGPCQFPTLGFVVRRYWQQQGFVPEDFFTLQ---LQHG-DTKFHSSRGSMYD 250
Query: 64 FDVAT-----MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
AT M Q + ++ ++ + P L TV + K+A++ L +
Sbjct: 251 QVAATLIYEDMLQAAAADGHKGRITNVQQRPSHRRPPVPLATVVMQKLAATHLRITSERC 310
Query: 119 MQLAERLYTQGFISYPRTESTAYP-SSFDFRGTLSALANNPVWGDYVERLLAE--GYAKP 175
M LAE LY +G ISYPRTE+ +Y + + N +Y +LA+ + +P
Sbjct: 311 MTLAESLYQEGLISYPRTETDSYTFQESELLELVRVQTANADVAEYATAMLADIATHVRP 370
Query: 176 --RSGTDAGDHPPITPMRS--ATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
R G D HPPI P ++ AT+D G RLY+ + +HFL ++SPD
Sbjct: 371 PLRGGHDDKAHPPIHPTKAWNATQDERG----RLYNLIVRHFLASLSPD 415
>gi|308813033|ref|XP_003083823.1| DNA topoisomerase III alpha (ISS) [Ostreococcus tauri]
gi|116055705|emb|CAL57790.1| DNA topoisomerase III alpha (ISS) [Ostreococcus tauri]
Length = 382
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELKLEWERQKLFDFDV 66
++ YGPCQTPTLGFCVQR+L+I PE +W L G E+ +W R +LFD +
Sbjct: 80 VVSYGPCQTPTLGFCVQRHLEIVRHVPEPYWVLEALFADADRGEEVAPKWARSRLFDEEA 139
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
A F +LV + +V+ + K E + RP GLNTV +LK AS+ LG G AMQ
Sbjct: 140 ARAFLQLVNDAKTFDVVSVESKAEKRPRPSGLNTVEMLKAASAGLGMGAHRAMQ 193
>gi|73669624|ref|YP_305639.1| DNA topoisomerase, type I [Methanosarcina barkeri str. Fusaro]
gi|72396786|gb|AAZ71059.1| DNA topoisomerase, type I [Methanosarcina barkeri str. Fusaro]
Length = 855
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 27/237 (11%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQ-------K 60
IL GPCQTPT GF +R I +F+ + FW + + ++G E E ++ +
Sbjct: 193 ILSIGPCQTPTCGFVYEREKAIRAFQAKDFWKITAIFSAESGKEGGKEGRKEGRKEGKKE 252
Query: 61 LFDFD-------------VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVA 107
DF+ A +F++L L V + K+ P LNT LK A
Sbjct: 253 RGDFEGTHRAGNIHDKEKAAEIFKRLKGTKEGL-VAKKTVKETKTSPPNPLNTTEFLKRA 311
Query: 108 SSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERL 167
S LG P++A+++AE+LY GF SYPRTE+ Y FDF+ + A + + E +
Sbjct: 312 SKFLGISPELALEVAEQLYLAGFTSYPRTETNKYAEDFDFKSLVFDFARQKEYKPFAESI 371
Query: 168 LAEGYAKPRSGTDAGDHPPITPMRSATEDMLGK-----DAWRLYSYVCQHFLGTVSP 219
L DA DHPPI P+R+A+ + A +Y+ + +HFL + P
Sbjct: 372 LIAPIVPKNGEKDAHDHPPIHPIRAASRGEVSSAVNIPQAPEVYNLIARHFLANLMP 428
>gi|435851915|ref|YP_007313501.1| topoisomerase IA [Methanomethylovorans hollandica DSM 15978]
gi|433662545|gb|AGB49971.1| topoisomerase IA [Methanomethylovorans hollandica DSM 15978]
Length = 791
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 109/221 (49%), Gaps = 15/221 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
IL GPCQTPT GF +R I F PE FW + + K + D A
Sbjct: 206 ILSIGPCQTPTCGFVYERDKAIKEFNPEDFWKIEALFHAKDMDFKGVHRAGNIKDKAKAA 265
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVR---PCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+F ++ R + +++K ++++ P LNT LK AS L P+ A+++AE+
Sbjct: 266 EIFDRI----RAGKTGLVTKKSVTEIKTNAPYPLNTTEFLKRASKFLNISPESALEIAEQ 321
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LY GF SYPRTE+ Y FDF+ + A + + D+ +L+ G R+G D D
Sbjct: 322 LYLNGFTSYPRTETNKYADDFDFKSKVIAFTSTE-YRDHALAILSGGDIVVRNGIKDGHD 380
Query: 184 HPPITPMRSATEDMLGK-----DAWRLYSYVCQHFLGTVSP 219
HPPI P+++ + K A ++Y + +HFL + P
Sbjct: 381 HPPIHPIKAVAVKEVEKAVKTEGAGKIYDLIARHFLANLMP 421
>gi|448737373|ref|ZP_21719414.1| DNA topoisomerase I [Halococcus thailandensis JCM 13552]
gi|445803833|gb|EMA54109.1| DNA topoisomerase I [Halococcus thailandensis JCM 13552]
Length = 827
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-ERQ------KLFDFD 65
G Q+PTL V R +I +F PE +W L L ++ ++++ +R+ +L+D
Sbjct: 192 GRVQSPTLKLIVDRERKIQAFDPETYWELFSDLRKDQTTFEVQYFDREAGRGTDRLWDES 251
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
VA + + V ++S + + P +NT ++ A S LGY Q AM LAE L
Sbjct: 252 VAAEVYDALDEASAATVQEVSRRTRTDDPPSPMNTTQYIRAAGS-LGYSAQRAMSLAEEL 310
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
YT G+I+YPRT++T YP D L N+ +G+ E LL P G + DH
Sbjct: 311 YTAGYITYPRTDNTVYPDDLDIEELLEGFTNHREFGEDAEALLESEEIVPTEGDEETTDH 370
Query: 185 PPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
PPI P + SA+E LG D +Y V + F TV+
Sbjct: 371 PPIHPTGELPSASE--LGDDEREIYELVVRRFFATVA 405
>gi|82914812|ref|XP_728858.1| DNA topoisomerase III [Plasmodium yoelii yoelii 17XNL]
gi|23485425|gb|EAA20423.1| DNA topoisomerase iii [Plasmodium yoelii yoelii]
Length = 677
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 2/173 (1%)
Query: 50 YELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASS 109
Y + W R KLFD + + ++++ + + +I EK+ K RP LNT+ + K+ S
Sbjct: 308 YVVDFTWSRLKLFDHLGVVLIYEDLLKNPLCRISNIFEKEVKKYRPFPLNTLQMTKLVSK 367
Query: 110 ALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA 169
+ M +AE+LY +G+ISYPRTE+ + S + R + L N ++G Y +L
Sbjct: 368 YFHISSKECMNIAEKLYNKGYISYPRTETNYFVDSMNLRKIIHELKKNNIFGSYATKLAE 427
Query: 170 EGYAKPRSGT-DAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPD 220
+ KPR G + HPPI P+++ + + + W++Y ++C+HFL S D
Sbjct: 428 KNSCKPRKGKLNDKAHPPIHPVKNMNKANNVDFKEWKIYEFICRHFLAVCSDD 480
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQN 48
T I+ YGPCQ PTLGF V RYLQI +F E +WT+ YL Q+
Sbjct: 204 TKIISYGPCQFPTLGFVVNRYLQIKNFNNEYYWTIKMGYLYQD 246
>gi|20091341|ref|NP_617416.1| DNA topoisomerase I [Methanosarcina acetivorans C2A]
gi|19916471|gb|AAM05896.1| DNA topoisomerase, type I [Methanosarcina acetivorans C2A]
Length = 752
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 8/212 (3%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDV 66
+ L G Q+PTL V R + F P +W +H L + G + ++ D +
Sbjct: 194 MFLSVGRVQSPTLSLVVDREKERNIFVPTPYWEIHVELETKAGETFSAQHSTRRFLDKEE 253
Query: 67 AT-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
AT +F+KL + E+ +I + +S + P NT + A+S +G P AM++AE L
Sbjct: 254 ATAVFKKL---GKKAELKEIEKGTKSDLPPTPFNTTGFISAANS-IGLSPANAMRIAESL 309
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDH 184
YT G+ISYPRT++T YP + D R + P + ++ + LL + P R + DH
Sbjct: 310 YTNGYISYPRTDNTVYPETLDLRAQIEIFTEGP-FKEFADALLEKAELVPTRGKKETTDH 368
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGT 216
PPI P A E L ++ W++Y V + F T
Sbjct: 369 PPIYPASLAKESELKEEEWKVYELVVRRFFAT 400
>gi|435850997|ref|YP_007312583.1| DNA topoisomerase I, archaeal [Methanomethylovorans hollandica DSM
15978]
gi|433661627|gb|AGB49053.1| DNA topoisomerase I, archaeal [Methanomethylovorans hollandica DSM
15978]
Length = 753
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 111/212 (52%), Gaps = 8/212 (3%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFD-FD 65
L L G Q+PTL V + + +F+ + +W L+ +L + E ++ ++ ++ +
Sbjct: 190 LFLSVGRVQSPTLALIVDKEKEREAFEIKPYWELYAHLKDRKDIEFTVQHVNRRFWEKHE 249
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
V + L I EV+ ++K + P NT + ASS LG+ P AM++AE L
Sbjct: 250 VDKLVSNLGKNAIIKEVVTSTKKDKP---PIPFNTTEFITAASS-LGFTPASAMRIAEAL 305
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDH 184
Y QGFISYPRT++T YP++ D R + A + +Y E+LLA+ +P R + DH
Sbjct: 306 YIQGFISYPRTDNTVYPATLDLREMIEIFAKG-TFKEYAEKLLAKETLEPTRGKKETTDH 364
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGT 216
PPI P A + L + W++Y V + F T
Sbjct: 365 PPIYPASLAKKSELNEQEWKIYEMVVRRFFAT 396
>gi|110667236|ref|YP_657047.1| DNA topoisomerase I [Haloquadratum walsbyi DSM 16790]
gi|109624983|emb|CAJ51396.1| DNA topoisomerase I [Haloquadratum walsbyi DSM 16790]
Length = 857
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 104/227 (45%), Gaps = 22/227 (9%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKL-------EWERQKLFDFD 65
G Q PTL V R +I +F PE +W L L Q +++ E+E Q + D
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPEDYWELFVDLTQADKPIEVSTDDTAAEFEAQYFYHAD 254
Query: 66 VATMFQKLVMQD------RILEVIDISEKQESKVR------PCGLNTVNLLKVASSALGY 113
T +++ + LE I+ K R P NT + A S +GY
Sbjct: 255 DGTEAERITEESTAKTVFETLESASIAHVDSVKRRTRTDEPPAPFNTTQFISAAGS-IGY 313
Query: 114 GPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYA 173
Q AM +AE LYT G+I+YPRT++T YP D R + AL N +G +L +
Sbjct: 314 AAQRAMDIAEDLYTAGYITYPRTDNTVYPDELDPRELIEALTNGSRFGSDARDVLDQETL 373
Query: 174 KPRSGT-DAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVS 218
P +G + DHPPI P + L D W +Y + +HFL TVS
Sbjct: 374 SPTTGDEETTDHPPIHPTDELPKPSELDDDKWEVYELIVRHFLATVS 420
>gi|52549025|gb|AAU82874.1| DNA topoisomerase I [uncultured archaeon GZfos21B5]
Length = 681
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 3/213 (1%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVATMFQ 71
G Q+PTL V++ +I F P K+W LH L +NG + + K ++ D A + +
Sbjct: 191 GRVQSPTLALLVEKEKEIAKFVPRKYWELHAKLKTENGEIFDVTHKTAKFWEKDEAEVAK 250
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ + V + K + P +T ++ A+SA+ Y P+ M +AE LY G I
Sbjct: 251 ARIEAAKEGFVRTLKTKLRVEKPPTPFDTTTFIR-AASAISYTPKRLMAIAEGLYLGGLI 309
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPITPM 190
SY RT++T YP + D + + + +G + + LL + KP +G DHPPI P+
Sbjct: 310 SYHRTDNTTYPDTLDLKALVQMFQKHKEFGKHAKLLLTKKELKPTAGKKKTTDHPPIHPV 369
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
T+D L KD W++Y V + FL T+S K+
Sbjct: 370 AETTKDKLEKDEWKVYELVVRRFLATLSDAAKW 402
>gi|284161403|ref|YP_003400026.1| DNA topoisomerase [Archaeoglobus profundus DSM 5631]
gi|284011400|gb|ADB57353.1| DNA topoisomerase [Archaeoglobus profundus DSM 5631]
Length = 648
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 13/214 (6%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+PTL V+R QI SFK + ++ + ++ G K ++E+++ + +
Sbjct: 189 LSVGRVQSPTLRLIVEREEQIKSFKSKYYY--NAFVKVRGIYAKRKFEKEE----EAKAV 242
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ + L+V+ + + +P NT LK AS + P AM +AE LY +G
Sbjct: 243 LESI----NTLKVLSFKKSVVEEKKPIPFNTTEFLKEASKFMK--PDKAMAIAENLYMEG 296
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITP 189
+ISYPRT++T YP + + + + ++ + D+ E +L G R + DHPPI P
Sbjct: 297 YISYPRTDNTVYPKTLNLKKLVEMFLSSD-FKDHAEFVLKHGIEPSRGRKETSDHPPIHP 355
Query: 190 MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
A++D L KD W +Y V + FL T++P K+
Sbjct: 356 TAVASKDELSKDEWTIYELVVKRFLATLAPKAKW 389
>gi|339444649|ref|YP_004710653.1| hypothetical protein EGYY_10740 [Eggerthella sp. YY7918]
gi|338904401|dbj|BAK44252.1| hypothetical protein EGYY_10740 [Eggerthella sp. YY7918]
Length = 850
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 12/217 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL V R + +F PE +W + + + F+ AT K
Sbjct: 239 GRVQTPTLALIVARERERLAFVPEDYWVIRGGFDAAAQSGPTSGDGELAFEAPHATARFK 298
Query: 73 LVMQDRIL----------EVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
+ + + V + +K+ + P NT +L+ A+SA G P M++A
Sbjct: 299 VEAEAQAAMAHVEGATSATVSAVEKKKRTVAPPVPFNTTSLM-AAASAEGLSPARTMRIA 357
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDA 181
E LY G+ISYPR ++T YPSS D T+ A++ NP + Y + LLA+G R +
Sbjct: 358 ESLYMDGYISYPRVDNTVYPSSLDLAETVKAISGNPAYAPYCKELLAKGKLTATRGKKET 417
Query: 182 GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P AT D L ++LY+ + + FL T+S
Sbjct: 418 TDHPPIYPTAKATPDDLAPADYKLYNLIARRFLATLS 454
>gi|448457005|ref|ZP_21595579.1| DNA topoisomerase I [Halorubrum lipolyticum DSM 21995]
gi|445811092|gb|EMA61102.1| DNA topoisomerase I [Halorubrum lipolyticum DSM 21995]
Length = 865
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 17/220 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L+ L ++G +E + + E ++++D
Sbjct: 195 GRVQGPTLKLIVDREREIQAFDPEAYWELYGNLTKSGGDPFEARYFYLNDDGNEAERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
DVA + + + V D+ + + P NT ++ A S LGY Q AM LAE
Sbjct: 255 GDVAEVLTEALAAAGEAVVDDVRRRTRTDEPPTPFNTTAFIRAAGS-LGYSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSG-TDA 181
LYT G+++YPRT++T YP D R + L+ +G + LL A+ +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPEDLDPRELIEELSAASTFGKDAKSLLDADREIEPTEGDEET 373
Query: 182 GDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + SA++ L +D W +Y + + FL T +
Sbjct: 374 TDHPPIHPTGELPSASD--LSEDEWEVYELIVRRFLATCA 411
>gi|448476502|ref|ZP_21603588.1| DNA topoisomerase I [Halorubrum aidingense JCM 13560]
gi|445815365|gb|EMA65290.1| DNA topoisomerase I [Halorubrum aidingense JCM 13560]
Length = 878
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 17/220 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L+ L ++G +E + + E ++++D
Sbjct: 195 GRVQGPTLKLIVDREREIKAFDPEAYWELYGNLTKSGGDPFEARYFYLNDEGNEAERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
DVA + + + V D+ + + P NT ++ A S LGY Q AM LAE
Sbjct: 255 GDVAEILTEALNAAEEAVVDDVRRRTRTDEPPTPFNTTAFIRAAGS-LGYSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSG-TDA 181
LYT G+++YPRT++T YP D R + L+ +G + LL A+ +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPEDLDPRELIEELSAASTFGSDAKGLLDADREIEPTEGDKET 373
Query: 182 GDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + SA++ L +D W +Y + + FL T +
Sbjct: 374 TDHPPIHPTGELPSASD--LSEDEWEVYELIVRRFLATCA 411
>gi|403213445|emb|CCK67947.1| hypothetical protein KNAG_0A02580 [Kazachstania naganishii CBS
8797]
Length = 650
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 18/232 (7%)
Query: 8 LILIYGPCQTPTLGF-CVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFD-F 64
+++ YGPCQ P G +R+ +I +F PE+FW + L +N +WER LFD
Sbjct: 224 VVISYGPCQFPHFGVRGGRRFERIRNFIPEEFWYIQLQLAGENTGTTTFQWERGHLFDRL 283
Query: 65 DVATMFQKLV--MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
V T ++ + DR +V ++ K +K RP L TV L K + L + ++ A
Sbjct: 284 SVLTFYETCLETAGDRA-KVSNLRSKPTAKYRPLPLTTVELQKNCARFLRINAKQSLAAA 342
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFR-----GTLSALANNPVWGDYVERLLA--EGYAK- 174
E+LY +GFISYPRTE+ +P + + G L ++ W Y LL+ G K
Sbjct: 343 EKLYQKGFISYPRTETDTFPRTMESELKKIVGNLGGSDSDNSWSSYANELLSVNNGSNKF 402
Query: 175 --PRSGT-DAGDHPPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVSPDCK 222
PR G+ D HPPI P+ S + + + R+Y YV +HFL S D K
Sbjct: 403 KFPRGGSHDDKAHPPIHPIISLGPNANVDANEKRVYEYVVRHFLACCSEDAK 454
>gi|346310924|ref|ZP_08852936.1| hypothetical protein HMPREF9452_00805 [Collinsella tanakaei YIT
12063]
gi|345897172|gb|EGX67103.1| hypothetical protein HMPREF9452_00805 [Collinsella tanakaei YIT
12063]
Length = 862
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 8/209 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA-TMFQ 71
G QTPTL V+R + +F PE +W + G + K+ + D D A T F
Sbjct: 240 GRVQTPTLALVVERERERMAFVPEDYWQIRGMAAAKGADFKINHATARFTDKDAAQTAFG 299
Query: 72 KLVMQDRILE--VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ D ++ V D++++ + P NT +L + A++A G P M++AE LY G
Sbjct: 300 HV---DGVVAGTVTDVAKRSRKQQPPVPFNTTSL-QAAAAAEGISPARTMRIAESLYMSG 355
Query: 130 FISYPRTESTAYPSSFDFRGTLSAL-ANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
ISYPR ++T YP S D G + L AN+P +++LA R T+ DHPPI
Sbjct: 356 LISYPRVDNTVYPRSLDLEGIVKGLAANSPALAPVCKKVLAGPMKPTRGKTETTDHPPIH 415
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTV 217
P L +LY+ + + FL T+
Sbjct: 416 PTGQGDPTTLDSGQLKLYNLIARRFLATL 444
>gi|448359807|ref|ZP_21548456.1| DNA topoisomerase I [Natrialba chahannaoensis JCM 10990]
gi|445641874|gb|ELY94946.1| DNA topoisomerase I [Natrialba chahannaoensis JCM 10990]
Length = 826
Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 23/222 (10%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTL--------------HPYLVQNGYELKLEWER 58
G Q+PTL V R +I +F PE +W L + Y ++G E + WE
Sbjct: 191 GRVQSPTLKLMVDREREIEAFDPEDYWELVADVAKGEEAFEAQYFYRDEDGNEAERVWEE 250
Query: 59 QKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
D +F+ L +D V+D++ + + P NT ++ A+SALGY + A
Sbjct: 251 AVAED-----VFETLSQRD-TATVVDVNRRTRTDSPPAPFNTTQFIR-AASALGYSAKRA 303
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG 178
M +AE LYT G+I+YPRT++T YP D L +P G+ E LL +P G
Sbjct: 304 MSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPTLGESAESLLEADEIEPTEG 363
Query: 179 -TDAGDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
+ DHPPI P + + D W ++ V + F TV+
Sbjct: 364 DEETTDHPPIHPTGEIPSRGDVSDDEWEVFELVVRRFYATVA 405
>gi|448467207|ref|ZP_21599409.1| DNA topoisomerase I [Halorubrum kocurii JCM 14978]
gi|445812864|gb|EMA62851.1| DNA topoisomerase I [Halorubrum kocurii JCM 14978]
Length = 865
Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 72/219 (32%), Positives = 111/219 (50%), Gaps = 15/219 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L+ L ++G +E + + E ++++D
Sbjct: 195 GRVQGPTLKLIVDREREIQAFDPESYWELYGNLTKSGGDPFEARYFYLNDEGNEAERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
DVA + + + V D+ + + P NT ++ A S LGY Q AM LAE
Sbjct: 255 GDVAEVLTEALDAADEAVVDDVRRRTRTDEPPTPFNTTAFIRAAGS-LGYSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSG-TDA 181
LYT G+++YPRT++T YP D R + L+ +G +RLL A+ +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPEDLDPRELIEELSVASTFGADAKRLLDADREIEPTEGDEET 373
Query: 182 GDHPPITPMRS--ATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPP+ P A D L +D W +Y + + FL T +
Sbjct: 374 TDHPPVHPTGELPAASD-LSEDEWEVYELIVRRFLATCA 411
>gi|448395862|ref|ZP_21568956.1| DNA topoisomerase I [Haloterrigena salina JCM 13891]
gi|445660443|gb|ELZ13239.1| DNA topoisomerase I [Haloterrigena salina JCM 13891]
Length = 826
Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 11/216 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F PE +W L L ++ + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDREREIQAFDPEIYWELFGDLTKDETTFEAQYFYRDEDDNEAERVWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
VA + + + V+D++ + + P NT ++ A+ ALGY + AM +AE
Sbjct: 251 AVADEVYETLAERDSATVVDVNRRTRTDTPPTPFNTTQFIR-AAGALGYSAKRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP D L ++P GD E LL P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEELLDDFVSHPTLGDSAESLLEADEIVPTEGDEETTD 369
Query: 184 HPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P T + D W ++ V + F TV+
Sbjct: 370 HPPIHPTGEIPTRGDVSDDEWEVFELVVRRFYATVA 405
>gi|257784895|ref|YP_003180112.1| DNA topoisomerase type IA central domain-containing protein
[Atopobium parvulum DSM 20469]
gi|257473402|gb|ACV51521.1| DNA topoisomerase type IA central domain protein [Atopobium
parvulum DSM 20469]
Length = 837
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 5/209 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV---QNGYELKLEWERQKLFDFDVATM 69
G QTPTL V+R + +FKPE +W + + K+ + + +D A
Sbjct: 241 GRVQTPTLALVVERERERLAFKPEDYWVISGVASPEDDDEATFKMVHQTARFWDQAEADT 300
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+V V++I + + P NT +L + A++A G P M+LAE LY G
Sbjct: 301 VYDVVKDQTQATVVEIESRSRKQQPPAPFNTTSL-QAAAAAEGISPARTMRLAESLYMDG 359
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAKPRSGTDAGDHPPIT 188
ISYPR ++T YPSS D + + L+ P + ++LL + R ++ DHPPI
Sbjct: 360 LISYPRVDNTVYPSSLDLKDCVRTLSAVPQYAPTCKKLLGQPKLHATRGKQESTDHPPIY 419
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTV 217
P +A D L AW+LY+ + + FL T+
Sbjct: 420 PTAAANPDSLQPAAWKLYNLIARRFLATL 448
>gi|223476951|ref|YP_002581633.1| DNA topoisomerase I [Thermococcus sp. AM4]
gi|214032177|gb|EEB73007.1| DNA topoisomerase I [Thermococcus sp. AM4]
Length = 719
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 107/211 (50%), Gaps = 5/211 (2%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
++L G Q PTL F V+R +I SFKP+ +W + L + G + +E+ K++D + A
Sbjct: 194 MVLSTGRVQGPTLKFLVEREKEIQSFKPKPYWVIKMILEKEGKQYTATYEKDKIWDEEEA 253
Query: 68 T-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ Q+ +E +++ KQ+ + P + L + A SA GY P+ +++A+RLY
Sbjct: 254 KRIVQEAKKGPAFVEKVEV--KQQKRNPPVPFDLGTLQREAYSAFGYSPKKTLEIAQRLY 311
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHP 185
+G+ SYPRT S P + +FR L LA P + + LL +G KP G HP
Sbjct: 312 EKGYTSYPRTSSQKLPKNLNFRSILQNLAKLPEYKPFAHELLGKGNLKPVEGKKEDPAHP 371
Query: 186 PITPMRSATE-DMLGKDAWRLYSYVCQHFLG 215
I P + L KD +Y V + FL
Sbjct: 372 AIYPTGELPKPGELSKDEKNIYDLVVRRFLA 402
>gi|448589917|ref|ZP_21649976.1| DNA topoisomerase I [Haloferax elongans ATCC BAA-1513]
gi|445735032|gb|ELZ86585.1| DNA topoisomerase I [Haloferax elongans ATCC BAA-1513]
Length = 855
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ------------K 60
G Q PTL V R +I +F PE +W L L ++ +E Q +
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGAAESFEAQYFYLDDDGTEAER 254
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++D D A + ++ EV + + + P NT ++ A S +GY Q AM
Sbjct: 255 IWDEDAAQAAYEDLLSVDAAEVTAVKRRTRTDKPPAPFNTTQFIRAAGS-IGYSAQRAMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D R L A + + + E LL + +P G
Sbjct: 314 IAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEGDN 373
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ DHPPI P + SA++ L +D W +Y V + F TV+ D
Sbjct: 374 ETTDHPPIHPTGELPSASD--LSEDEWDVYELVVRRFFATVAEDA 416
>gi|387592248|gb|EIJ87272.1| hypothetical protein NEQG_02607 [Nematocida parisii ERTm3]
gi|387597411|gb|EIJ95031.1| hypothetical protein NEPG_00556 [Nematocida parisii ERTm1]
Length = 853
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 71/216 (32%), Positives = 114/216 (52%), Gaps = 8/216 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF +R I F EK WT+ + NG +WER ++D D A
Sbjct: 199 VISYGSCQIPTLGFVCEREESIEEFVEEKNWTIEAEVQNNGERGVFKWERGVVYDEDYAG 258
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA-MQLAERLYT 127
+ + + + ++ V + K+ K RP L TV L K + G M +AE LYT
Sbjct: 259 IKLRTISGEELV-VNKVEIKKRHKSRPWPLRTVELQKFFARGHGVSSSHELMNIAESLYT 317
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
G+ISYPRTE+ + S F+++ L+AL + V +Y ++L+ +P +G + H P
Sbjct: 318 SGYISYPRTETDVFSSQFNYKDPLAALKGDSVLSEYAKKLVP---GRPSAGRHNDQAHTP 374
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P+++ + + GK+ +Y Y+ + FL S D +
Sbjct: 375 IYPLKAGS-GLKGKER-AVYEYIARRFLACYSADAE 408
>gi|378755338|gb|EHY65365.1| hypothetical protein NERG_01811 [Nematocida sp. 1 ERTm2]
Length = 772
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 107/215 (49%), Gaps = 6/215 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF R I +F EK WT+ + NG + +WER ++D +
Sbjct: 199 VISYGSCQIPTLGFICAREESIENFVEEKNWTIQADVQHNGEKGVFKWERGLVYDEEYVN 258
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKV-ASSALGYGPQMAMQLAERLYT 127
+ V ++ V I K+ K RP L TV L K A M +AE LYT
Sbjct: 259 IKLGAVSGADLI-VSKIETKKRYKSRPWPLRTVELQKFFARGKSVANSHELMNIAESLYT 317
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
G+ISYPRTE+ A+PS+F+ + ++AL + V G+Y + L +K A H PI
Sbjct: 318 SGYISYPRTETDAFPSNFNSKDPMAALKGDSVLGEYAKNLKPGVPSKGNHNDQA--HTPI 375
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++S + L +Y Y+ + FL S + +
Sbjct: 376 YPLKSGS--ALNGKERSVYEYIARRFLACYSANAE 408
>gi|354611994|ref|ZP_09029946.1| DNA topoisomerase [Halobacterium sp. DL1]
gi|353191572|gb|EHB57078.1| DNA topoisomerase [Halobacterium sp. DL1]
Length = 828
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 107/217 (49%), Gaps = 12/217 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G QTPTL V + +I +F+P+ +W L L ++ E + ++ E +++++
Sbjct: 190 GRVQTPTLKLIVDKEREIEAFEPDDYWELFADLTKDETEFEAQYFYESEDGTEAERVWNE 249
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
D A + + V +S + + P NT ++ A S LGY AM +AE
Sbjct: 250 DDAEAAFATLREASEAIVQSVSSRTRTDDPPAPFNTTQFIRAAGS-LGYSAGRAMSIAED 308
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+++YPRT++T YP D R L+A N V+GD LL P G + D
Sbjct: 309 LYTAGYVTYPRTDNTVYPDDLDERELLAAFENT-VFGDSATSLLERDDLTPTEGDEETTD 367
Query: 184 HPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
HPPI P + + L +D W +Y V + F T++P
Sbjct: 368 HPPIHPTSDFPDRNQLSEDEWEVYELVVRRFFATLAP 404
>gi|16081238|ref|NP_393542.1| DNA topoisomerase I [Thermoplasma acidophilum DSM 1728]
gi|14423969|sp|Q9HM08.1|TOP1_THEAC RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|10639209|emb|CAC11211.1| DNA topoisomerase III beta related protein [Thermoplasma
acidophilum]
Length = 770
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 7/214 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G QTPTL V R +I SF+PE++WT+ ++G + K + + + D D A
Sbjct: 193 LSAGRVQTPTLAIVVDREREIQSFRPERYWTISITFDKDG-QFKARYP-ENIKDQDTAEK 250
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ + + + V + K++ RP +T L+ AS +G P AM +AE LY +G
Sbjct: 251 IYEAI-KGKNGRVSSYTSKEDHIRRPAPFSTTEFLREASR-IGIMPTKAMSIAENLYMRG 308
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPIT 188
ISYPRT++T YP S + + L L N + YV+ + P G + DHPPI
Sbjct: 309 LISYPRTDNTVYPRSINLKSVLKKLENT-AYSKYVKEIETFDRILPSRGRIETTDHPPIY 367
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ S E + G D R+Y + +HFL T+ D K
Sbjct: 368 PVDSPKEQLKG-DYGRVYDLILRHFLSTLYRDGK 400
>gi|448579765|ref|ZP_21644759.1| DNA topoisomerase I [Haloferax larsenii JCM 13917]
gi|445723101|gb|ELZ74751.1| DNA topoisomerase I [Haloferax larsenii JCM 13917]
Length = 852
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 108/225 (48%), Gaps = 19/225 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q PTL V R +I +F PE +W L L ++ +E Q + D T ++
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPEDYWELFSELTKDADGAAESFEAQYFYLDDDGTEAER 254
Query: 73 LVMQDRILEV------IDISEKQESKVR------PCGLNTVNLLKVASSALGYGPQMAMQ 120
+ +D E +D +E K R P NT ++ A S +GY Q AM
Sbjct: 255 IWDEDAAQEAYEDLLGVDAAEVTAVKRRTRTDKPPAPFNTTQFIRAAGS-IGYSAQRAMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D R L A + + + E LL + +P G
Sbjct: 314 IAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEGDN 373
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ DHPPI P + SA++ L +D W +Y V + F TV+ D
Sbjct: 374 ETTDHPPIHPTGELPSASD--LDEDEWDVYELVVRRFFATVAEDA 416
>gi|336255063|ref|YP_004598170.1| DNA topoisomerase [Halopiger xanaduensis SH-6]
gi|335339052|gb|AEH38291.1| DNA topoisomerase [Halopiger xanaduensis SH-6]
Length = 826
Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats.
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 19/220 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F PE +W L L ++ + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDREREIQAFDPEDYWELFADLAKDDTTFESQYFYRDEDDNEAERVWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A + Q V+D++ + + P NT ++ A+ ALGY Q AM +AE
Sbjct: 251 AAAEEVYDTLSQRDSATVVDVNRRTRTDAPPTPFNTTQFIR-AAGALGYSAQRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP D L +P G+ E LL +P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPTLGESAEDLLEADEIQPTEGDEETTD 369
Query: 184 HPPI-----TPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P R D D W ++ V + F TV+
Sbjct: 370 HPPIHPTGEIPARGDVSD----DEWEIFELVVRRFYATVA 405
>gi|147919417|ref|YP_686844.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
gi|110622240|emb|CAJ37518.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
Length = 728
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 6/211 (2%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G QTP L V R +I +F +W ++ L NG + + E + D A
Sbjct: 188 LSVGRVQTPLLALLVDREKEIKAFVSTPYWEIYATL-GNGTDFTAKHECNRFEDKKKADS 246
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ + V++ + S P +T ++ ASS +G+ AM++AE LY G
Sbjct: 247 VRAKLGSTGT--VVEYKKDARSDAAPIPFSTTEFIRAASS-IGFSAANAMRIAENLYVNG 303
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDHPPIT 188
+ISYPRT++T YPSS + R L A +G+Y +LLA P R + DHPPI
Sbjct: 304 WISYPRTDNTVYPSSLNLRDVLQNFAAGE-FGEYARKLLAMKTLVPTRGKKETTDHPPIY 362
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSP 219
P+ SA + + D WR+Y V + F T++P
Sbjct: 363 PVSSAKKSDMADDEWRVYELVVRRFFATLAP 393
>gi|292654846|ref|YP_003534743.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|448292935|ref|ZP_21483256.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|448597061|ref|ZP_21654199.1| DNA topoisomerase I [Haloferax alexandrinus JCM 10717]
gi|291370931|gb|ADE03158.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|445571910|gb|ELY26453.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|445740942|gb|ELZ92447.1| DNA topoisomerase I [Haloferax alexandrinus JCM 10717]
Length = 840
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ------------K 60
G Q PTL V R +I +F PE +W L L ++ +E Q +
Sbjct: 195 GRVQGPTLKLIVDREREIDAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEAER 254
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++D D A + ++ EV ++ + + P NT ++ A S +GY Q AM
Sbjct: 255 IWDEDDAEEAYQTLLGVEAAEVSSVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRAMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D R L A + + + E LL + +P G
Sbjct: 314 IAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEGDN 373
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ DHPPI P + SA++ L D W +Y V + F TV+ D
Sbjct: 374 ETTDHPPIHPTGELPSASD--LSDDEWDVYELVVRRFFATVAEDA 416
>gi|147919524|ref|YP_686736.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
gi|110622132|emb|CAJ37410.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
Length = 767
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 4/215 (1%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G QTP L V R +I +F + +W + L++ +R + + A
Sbjct: 188 LSVGRVQTPLLALIVDREKEIQAFTSKPYWEIVATLLKEDRSFTASHKRGRFDKKEEAAA 247
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
K + + +++ + K+E P NT +K A+SALG+ AMQ+AE LY G
Sbjct: 248 IHKKLGKTAVVKDVKADRKKEQP--PIPFNTTEFVK-AASALGFTAASAMQIAEALYING 304
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDHPPIT 188
+ISYPRT++T YP + + + L +P + LLA P R + DHPPI
Sbjct: 305 WISYPRTDNTVYPDTLNLKDLLGIFKTSPDFAKSALELLAMPSITPTRGKVETKDHPPIY 364
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P+ A L W+LY V + + T+SP C++
Sbjct: 365 PVACAMRKDLDDRQWKLYELVVRRYFATLSPACEW 399
>gi|448572840|ref|ZP_21640601.1| DNA topoisomerase I [Haloferax lucentense DSM 14919]
gi|445719612|gb|ELZ71291.1| DNA topoisomerase I [Haloferax lucentense DSM 14919]
Length = 840
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ------------K 60
G Q PTL V R +I +F PE +W L L ++ +E Q +
Sbjct: 195 GRVQGPTLKLIVDREREIDAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEAER 254
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++D D A + ++ EV ++ + + P NT ++ A S +GY Q AM
Sbjct: 255 IWDEDDAEEAYQTLLGVEAAEVSSVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRAMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D R L A + + + E LL + +P G
Sbjct: 314 IAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEGDN 373
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ DHPPI P + SA++ L D W +Y V + F TV+ D
Sbjct: 374 ETTDHPPIHPTGELPSASD--LSDDEWDVYELVVRRFFATVAEDA 416
>gi|448728862|ref|ZP_21711183.1| DNA topoisomerase I [Halococcus saccharolyticus DSM 5350]
gi|445796237|gb|EMA46748.1| DNA topoisomerase I [Halococcus saccharolyticus DSM 5350]
Length = 861
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 70/216 (32%), Positives = 104/216 (48%), Gaps = 13/216 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F P+ +W L L ++ + ++ E ++++D D
Sbjct: 192 GRVQSPTLKLIVDREREIEAFDPDDYWELFCDLAKDEATFEAQYFYDDDGSEAERVWDGD 251
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
VA + V ++ + + P NT ++ ASS LGY Q AM LAE L
Sbjct: 252 VAEAVYDALRGASTAAVEEVRRRTRTDDPPTPFNTTQYIRAASS-LGYSAQRAMSLAEEL 310
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
YT G+I+YPRT++T YP D LS ++ +GD + LL + DHP
Sbjct: 311 YTAGYITYPRTDNTVYPDDLDVAELLSEFTDHSEFGDDADALLKNEPTPTEGDEETTDHP 370
Query: 186 PITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
PI P + S TE LG D +Y V + F TV+
Sbjct: 371 PIHPTGELPSTTE--LGDDERAVYELVVRRFFATVA 404
>gi|448613477|ref|ZP_21663357.1| DNA topoisomerase I [Haloferax mucosum ATCC BAA-1512]
gi|445740374|gb|ELZ91880.1| DNA topoisomerase I [Haloferax mucosum ATCC BAA-1512]
Length = 840
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ------------K 60
G Q PTL V R +I +F PE +W L L ++ +E Q +
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGAAESFEAQYFYLDDDGTEAER 254
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++D + A + V+ EV + + + P NT ++ A S +GY Q AM
Sbjct: 255 IWDEEAAESAYETVLDVETAEVTAVKRRTRTDKPPAPFNTTQFIRAAGS-IGYSAQRAMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D R L A + + D + LL + +P G
Sbjct: 314 IAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKDDAKSLLEQEEIEPTEGDN 373
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
+ DHPPI P + SA++ L +D W +Y V + F TV+
Sbjct: 374 ETTDHPPIHPTGELPSASD--LSEDEWDVYELVVRRFFATVA 413
>gi|157877136|ref|XP_001686899.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
gi|68129974|emb|CAJ09282.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
Length = 947
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 121/233 (51%), Gaps = 28/233 (12%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A + +L +GPCQ PTLGF V+RY Q F PE F+TL +Q+G + K R ++D
Sbjct: 195 AAIPGVLSFGPCQFPTLGFVVRRYWQQQGFVPEDFFTLQ---LQHG-DTKFHSSRGSMYD 250
Query: 64 FDVATMFQKLVMQDRIL---------EVIDISEKQESKVRPCGLNTVNLLKVASSALGYG 114
AT L+ +D +L + ++ ++ + P L TV + K+A++ L
Sbjct: 251 QVAAT----LIYEDMLLAAAAEGHKGRITNVQQRPSHRRPPVPLATVVMQKLAATHLRIP 306
Query: 115 PQMAMQLAERLYTQGFISYPRTESTAYP-SSFDFRGTLSALANNPVWGDYVERLLAE--G 171
+ M LAE LY +G ISYPRTE+ +Y + + +N +Y +LA+
Sbjct: 307 SERCMALAESLYQEGLISYPRTETDSYTFQESELLELVRVQISNADVAEYATAMLADIAT 366
Query: 172 YAKP--RSGTDAGDHPPITPMRS--ATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+P R G D HPPI P ++ AT+D G RLY+ + +HFL ++SPD
Sbjct: 367 RVRPPLRGGRDDKAHPPIHPTKAWNATQDERG----RLYNLIVRHFLASLSPD 415
>gi|448561113|ref|ZP_21634465.1| DNA topoisomerase I [Haloferax prahovense DSM 18310]
gi|445721345|gb|ELZ73013.1| DNA topoisomerase I [Haloferax prahovense DSM 18310]
Length = 840
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 19/225 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ------------K 60
G Q PTL V R +I +F PE +W L L ++ +E Q +
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEAER 254
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++D + A + ++ EV ++ + + P NT ++ A S +GY Q AM
Sbjct: 255 IWDEESAESAYQTLLGVEAAEVASVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRAMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D R L A + + + E LL + +P G
Sbjct: 314 IAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEGDN 373
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ DHPPI P + SA++ L +D W +Y V + F TV+ D
Sbjct: 374 ETTDHPPIHPTGELPSASD--LTEDEWDVYELVVRRFFATVAEDA 416
>gi|385802643|ref|YP_005839043.1| DNA topoisomerase I [Haloquadratum walsbyi C23]
gi|339728135|emb|CCC39257.1| DNA topoisomerase I [Haloquadratum walsbyi C23]
Length = 857
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 103/227 (45%), Gaps = 22/227 (9%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLE-------WERQKLFDFD 65
G Q PTL V R +I +F PE +W L L Q +++ +E Q + D
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPEDYWELFVDLTQADKPIEVSTDDTTAGFEAQYFYHAD 254
Query: 66 VATMFQKLVMQD------RILEVIDISEKQESKVR------PCGLNTVNLLKVASSALGY 113
T +++ + LE I+ K R P NT + A S +GY
Sbjct: 255 DGTEAERITEESTAKTVFETLESASIAHVDSVKRRTRTDEPPAPFNTTQFISAAGS-IGY 313
Query: 114 GPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYA 173
Q AM +AE LYT G+I+YPRT++T YP D R + AL N +G +L +
Sbjct: 314 AAQRAMDIAEDLYTAGYITYPRTDNTVYPDDLDPRELIEALTNGSRFGSDARDVLDQETL 373
Query: 174 KPRSGT-DAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVS 218
P +G + DHPPI P + L D W +Y + +HFL TVS
Sbjct: 374 SPTTGDEETTDHPPIHPTDELPKPSELDDDKWEVYELIVRHFLATVS 420
>gi|124513658|ref|XP_001350185.1| DNA topoisomerase III, putative [Plasmodium falciparum 3D7]
gi|23615602|emb|CAD52594.1| DNA topoisomerase III, putative [Plasmodium falciparum 3D7]
Length = 710
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/168 (32%), Positives = 94/168 (55%), Gaps = 3/168 (1%)
Query: 56 WERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGP 115
W R +LFD + + ++++ + ++ ++ E + K +P LNT+ + K+ S
Sbjct: 344 WSRIRLFDHLAVILIYEELLKNPLCKITNVYESETRKYKPYPLNTLQMTKLVSIYFKISS 403
Query: 116 QMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-GYAK 174
+ M LAE+LY +G+ISYPRTE+ +P S + ++ L N +G Y +L E Y K
Sbjct: 404 KECMMLAEKLYNKGYISYPRTETNYFPDSMNLHKIINELRKNDNFGWYANKLCEEHKYQK 463
Query: 175 PRSG-TDAGDHPPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVSPD 220
PR G + HPPI P+++ + + + + W+LY ++C+HFL S D
Sbjct: 464 PRKGKMNDKAHPPIHPVKNMNKSLKVEEKEWKLYEFICKHFLAVCSND 511
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYEL 52
T I+ YGPCQ PTLGF V RYL I +FK E +W++ V N E+
Sbjct: 204 TSIISYGPCQFPTLGFVVNRYLDIKNFKNEYYWSIKMKYVYNNDEI 249
>gi|383320621|ref|YP_005381462.1| DNA topoisomerase I [Methanocella conradii HZ254]
gi|379321991|gb|AFD00944.1| DNA topoisomerase I [Methanocella conradii HZ254]
Length = 706
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 6/215 (2%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G QTP L V R I SF P +W L+ +G E + + A
Sbjct: 187 LSVGRVQTPLLALIVDREKDIKSFVPTPYWELYATF-SDGEEFTAGHAGNRFAEKAKAEA 245
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
L RI +V++ ++ + P +T ++ A++ +G+ AM++AE LY G
Sbjct: 246 I--LARLGRIGKVVEFKKEPRPEYPPIPFSTTEFIR-AAAGIGFSAANAMRIAENLYVNG 302
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPIT 188
+ISYPRT++T YPSS + + +S + Y ++LL +G KP G + DHPPI
Sbjct: 303 WISYPRTDNTVYPSSLNLKEAVSQFIGGE-FDKYAQKLLEQGEFKPSRGKKETTDHPPIY 361
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P+ +A++ L D WR+Y V F T++P ++
Sbjct: 362 PVANASKSDLKADEWRIYELVVSRFFATLAPPAEW 396
>gi|282165112|ref|YP_003357497.1| DNA topoisomerase I [Methanocella paludicola SANAE]
gi|282157426|dbj|BAI62514.1| DNA topoisomerase I [Methanocella paludicola SANAE]
Length = 704
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 6/215 (2%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G QTP L V R I +F P +W ++ NG E + + A
Sbjct: 187 LSVGRVQTPLLALIVDREKDIKAFTPTPYWEIYATFT-NGEEFVAGHTGNRFTEKAKAEG 245
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ R +V D ++ + P +T ++ A+S +G+ AM++AE LY G
Sbjct: 246 I--MARLGRTGKVADYKKEPRVEYPPIPFSTTEFIRAAAS-IGFSAANAMRIAENLYVNG 302
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDHPPIT 188
+ISYPRT++T YP+S + + ++ A +G Y +RLL + KP R + DHPPI
Sbjct: 303 WISYPRTDNTVYPASLNLKEIVAQFAGGE-FGKYAQRLLEQSSFKPTRGKKETTDHPPIY 361
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
P+ SA + + D WR+Y V F T++P +Y
Sbjct: 362 PVASARKSEIKADEWRVYELVVSRFFATLAPPAEY 396
>gi|448714078|ref|ZP_21702095.1| DNA topoisomerase I [Halobiforma nitratireducens JCM 10879]
gi|445788962|gb|EMA39658.1| DNA topoisomerase I [Halobiforma nitratireducens JCM 10879]
Length = 827
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 14/218 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F PE++W L L ++ + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDRKREIQAFDPEEYWELFADLQKDDTSFEAQYFYRDEDDNEAERVWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A + V+D++ + + P NT ++ A+ ALGY Q AM +AE
Sbjct: 251 ATAEEVHDTLSSRDAATVVDVNRRTRTDAPPAPFNTTQFIR-AAGALGYSAQRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGD 183
LYT G+I+YPRT++T YP + L + GD E+LL +P R + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLEPEELLDEFVGHSTLGDSAEQLLEADALEPTRGDEETTD 369
Query: 184 HPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + S D + D W +Y V + F TV+
Sbjct: 370 HPPIHPTGEIPSRGGD-VNDDEWEIYELVVRRFYATVA 406
>gi|448444924|ref|ZP_21590071.1| DNA topoisomerase I [Halorubrum saccharovorum DSM 1137]
gi|445685679|gb|ELZ38029.1| DNA topoisomerase I [Halorubrum saccharovorum DSM 1137]
Length = 864
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 16/219 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L+ L ++G +E + + E ++++D
Sbjct: 195 GRVQGPTLKLIVDREREIQAFDPESYWELYGNLTKSGGDPFEARYFYLNDEGNEAERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
D A + + + V D+ + + P NT ++ A S LGY Q AM LAE
Sbjct: 255 GDAAEVLTEALDAAEDAVVDDVRRRTRTDDPPTPFNTTAFIRAAGS-LGYSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
LYT G+++YPRT++T YP + R + L+ +G + LL +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPDDLEPRELIEELSAASTFGTDAKSLLDREEIEPTEGDEETT 373
Query: 183 DHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + SA++ L +D W +Y + + FL T +
Sbjct: 374 DHPPIHPTGELPSASD--LSEDEWEVYELIVRRFLATCA 410
>gi|282165000|ref|YP_003357385.1| DNA topoisomerase I [Methanocella paludicola SANAE]
gi|282157314|dbj|BAI62402.1| DNA topoisomerase I [Methanocella paludicola SANAE]
Length = 679
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 8/217 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF--DVA 67
L G QTP L V R +I +F + +W L L++ G E + FD + A
Sbjct: 188 LSVGRVQTPLLAIIVDREKEILAFVSKPYWELVATLLK-GQEAFTAGHAKGRFDKKEEAA 246
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ +KL + V+ +K+ + P +T LK A+S +GY AMQ+AE LY
Sbjct: 247 AIHKKLGKTALVKGVLRDRKKEPA---PVPFSTTEFLKAAAS-IGYSAASAMQVAEELYI 302
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDAGDHPP 186
G+ISYPRT++T YP++ D R T+ +P + LL + R ++ DHPP
Sbjct: 303 NGWISYPRTDNTVYPATLDLRQTVGMFKASPEFAKSALELLGQKTLTATRGKVESKDHPP 362
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
I P+ A++ + + W+LY V + F T+SP C++
Sbjct: 363 IYPVACASKTQMDERKWKLYELVVRRFFATLSPPCEW 399
>gi|268325082|emb|CBH38670.1| DNA topoisomerase I [uncultured archaeon]
Length = 681
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 108/213 (50%), Gaps = 3/213 (1%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVATMFQ 71
G Q+PTL V++ +I F P K+W LH L NG + + K ++ D A + +
Sbjct: 191 GRVQSPTLALLVEKEKEIAKFVPRKYWELHAKLKTGNGEIFDVTHKTAKFWEKDEAEVAK 250
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ + + + K + P +T ++ A+SA+ Y P+ M +AE LY G I
Sbjct: 251 ARIEAAKSGFIRTLKTKLRVEKPPTPFDTTTFIR-AASAISYTPKRLMAIAEGLYLGGLI 309
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPITPM 190
SY RT++T YP + D + + + +G + + LL + KP +G DHPPI P+
Sbjct: 310 SYHRTDNTTYPDTLDLKTLVQMFQKHKEFGKHAKLLLTKKELKPTAGKKKTTDHPPIHPV 369
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
T+D L KD W++Y V + FL T+S K+
Sbjct: 370 AETTKDKLEKDEWKVYELVVRRFLATLSDAAKW 402
>gi|448543354|ref|ZP_21624919.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-646]
gi|448550308|ref|ZP_21628759.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-645]
gi|448559491|ref|ZP_21633565.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-644]
gi|445706491|gb|ELZ58369.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-646]
gi|445710881|gb|ELZ62676.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-644]
gi|445711751|gb|ELZ63540.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-645]
Length = 840
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ------------K 60
G Q PTL V R +I +F PE +W L L ++ +E Q +
Sbjct: 195 GRVQGPTLKLIVDREREIDAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEAER 254
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++D + A + ++ EV ++ + + P NT ++ A S +GY Q AM
Sbjct: 255 IWDEESAEEAYQTLLGVETAEVSSVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRAMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D R L A + + + E LL + +P G
Sbjct: 314 IAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEGDN 373
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ DHPPI P + SA++ L D W +Y V + F TV+ D
Sbjct: 374 ETTDHPPIHPTGELPSASD--LSDDEWDVYELVVRRFFATVAEDA 416
>gi|448624140|ref|ZP_21670213.1| DNA topoisomerase I [Haloferax denitrificans ATCC 35960]
gi|445750107|gb|EMA01546.1| DNA topoisomerase I [Haloferax denitrificans ATCC 35960]
Length = 840
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ------------K 60
G Q PTL V R +I +F PE +W L L ++ +E Q +
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEAER 254
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++D + A + ++ EV ++ + + P NT ++ A S +GY Q AM
Sbjct: 255 IWDEESAESAYQTLLGVEAAEVASVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRAMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D R L A + + + E LL + +P G
Sbjct: 314 IAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEGDN 373
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ DHPPI P + SA++ L D W +Y V + F TV+ D
Sbjct: 374 ETTDHPPIHPTGELPSASD--LTDDEWDVYELVVRRFFATVAEDA 416
>gi|448606973|ref|ZP_21659230.1| DNA topoisomerase I [Haloferax sulfurifontis ATCC BAA-897]
gi|445738401|gb|ELZ89921.1| DNA topoisomerase I [Haloferax sulfurifontis ATCC BAA-897]
Length = 840
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ------------K 60
G Q PTL V R +I +F PE +W L L ++ +E Q +
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEAER 254
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++D + A + ++ EV ++ + + P NT ++ A S +GY Q AM
Sbjct: 255 IWDEESAESAYQTLLGVEAAEVSSVNRRTRADTPPAPFNTTQFIRAAGS-IGYSAQRAMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D R L A + + + E LL + +P G
Sbjct: 314 IAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEGDN 373
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ DHPPI P + SA++ L D W +Y V + F TV+ D
Sbjct: 374 ETTDHPPIHPTGELPSASD--LSDDEWDVYELVVRRFFATVAEDA 416
>gi|448582254|ref|ZP_21645758.1| DNA topoisomerase I [Haloferax gibbonsii ATCC 33959]
gi|445731902|gb|ELZ83485.1| DNA topoisomerase I [Haloferax gibbonsii ATCC 33959]
Length = 840
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 19/225 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ------------K 60
G Q PTL V R +I +F PE +W L L ++ +E Q +
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGDAESFEAQYFYLDDDGTEAER 254
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++D + A + ++ EV ++ + + P NT ++ A S +GY Q AM
Sbjct: 255 IWDEESAESAYQTLLGVESAEVASVNRRTRTDTPPAPFNTTQFIRAAGS-IGYSAQRAMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D R L A + + + E LL + +P G
Sbjct: 314 IAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESLLEQEEIEPTEGDN 373
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ DHPPI P + SA++ L +D W +Y V + F TV+ D
Sbjct: 374 ETTDHPPIHPTGELPSASD--LTEDEWDVYELVVRRFFATVAEDA 416
>gi|448725243|ref|ZP_21707711.1| DNA topoisomerase I [Halococcus morrhuae DSM 1307]
gi|445799346|gb|EMA49726.1| DNA topoisomerase I [Halococcus morrhuae DSM 1307]
Length = 827
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 14/222 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-ERQ------KLFDFD 65
G Q+PTL V R +I F PE +W L L+++ ++++ +R+ +L+D
Sbjct: 192 GRVQSPTLKLIVDRERKIQKFDPETYWELFSDLLKDETTFEVQYFDREDGRGTDRLWDES 251
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
VA + + V D+S + + P NT ++ A S LGY Q AM LAE L
Sbjct: 252 VAAEVYDALGETSAATVQDVSRRTRTDDPPHPFNTTQYIRAAGS-LGYSAQRAMSLAEEL 310
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
YT G+I+YPRT++T YP D L N+ +GD E LL G + DH
Sbjct: 311 YTAGYITYPRTDNTVYPDDLDIEELLEGFTNHREFGDDAEALLEAEELSATEGDEETTDH 370
Query: 185 PPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PPI P + SA+E LG D +Y V + F TV+ K+
Sbjct: 371 PPIHPTGELPSASE--LGDDEREIYELVVRRFFATVADPAKW 410
>gi|452206874|ref|YP_007486996.1| DNA topoisomerase I [Natronomonas moolapensis 8.8.11]
gi|452082974|emb|CCQ36256.1| DNA topoisomerase I [Natronomonas moolapensis 8.8.11]
Length = 849
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 14/217 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFD-F 64
G Q+P L V R +I +F P+ +W L L+++G + ++ E +++++
Sbjct: 190 GRVQSPALKLIVDREREIRAFDPDDYWELFADLLKDGDAFEAQYFYLEDGNEAERVWEEA 249
Query: 65 DVATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
D F++L ++ I+E + ++ + P NT + ASS +G Q AM +AE
Sbjct: 250 DATEAFEQLQGAREAIVE--SVRRRRRTDEPPEPFNTTQYISSASS-VGLSAQKAMSVAE 306
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
LYT G+I+YPRT++T YP D L ++ ++GD + LL+ +P +G +
Sbjct: 307 ELYTAGYITYPRTDNTVYPDDLDPEALLDEFTDHYLFGDDADSLLSADAIEPTAGDEETT 366
Query: 183 DHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P D L +D W +Y V +HF TV+
Sbjct: 367 DHPPIHPTGEIPARDDLSEDEWEVYELVVRHFFATVA 403
>gi|302497521|ref|XP_003010761.1| hypothetical protein ARB_03463 [Arthroderma benhamiae CBS 112371]
gi|291174304|gb|EFE30121.1| hypothetical protein ARB_03463 [Arthroderma benhamiae CBS 112371]
Length = 473
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ + YG CQ PTLGF V RY+++ +FKPE FW++ ++G + W+R LFD
Sbjct: 67 ALAERTISYGSCQFPTLGFVVDRYMRVKNFKPEAFWSIKVSHTRDGITVNFNWQRGHLFD 126
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ + + + V +++K SK RP L TV+L + S L Q M+
Sbjct: 127 RAAVVVLFERCLAAKTATVTKVNKKPTSKWRPLPLTTVDLQMMGSKYLRIDSQAIMKFDN 186
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
+ + + YPS WG+Y L+ G+ +PR G +
Sbjct: 187 EIDLKKLV------EKQYPSE--------------AWGEYARGLIGGGFKQPRRGRNNDK 226
Query: 184 -HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P+ + +L + ++Y +V + FL S D K
Sbjct: 227 AHPPIHPVVYVSPTVLNTNEKKVYEFVTRRFLACCSEDAK 266
>gi|448397774|ref|ZP_21569807.1| DNA topoisomerase I [Haloterrigena limicola JCM 13563]
gi|445672873|gb|ELZ25444.1| DNA topoisomerase I [Haloterrigena limicola JCM 13563]
Length = 826
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 11/216 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F PE +W L L ++ + ++ E ++++D
Sbjct: 191 GRVQSPTLKLIVDREREIEAFDPEDYWELFADLQKDETRFEAQYFYRDEDDNEAERVWDE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A + + + V+D++ + + P NT ++ ASS LGY + AM +AE
Sbjct: 251 STADEVYETLAERDAATVVDVTRRTRTDTPPTPFNTTQFIRAASS-LGYSAKRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP D L + G+ E LL P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHSTLGESAESLLEADEITPTEGDEETTD 369
Query: 184 HPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + D W ++ V + F TV+
Sbjct: 370 HPPIHPTGEIPARGDISDDEWEIFELVVRRFFATVA 405
>gi|222478697|ref|YP_002564934.1| DNA topoisomerase type IA central domain protein [Halorubrum
lacusprofundi ATCC 49239]
gi|222451599|gb|ACM55864.1| DNA topoisomerase type IA central domain protein [Halorubrum
lacusprofundi ATCC 49239]
Length = 864
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 16/219 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L+ L ++G +E + + E +++++
Sbjct: 195 GRVQGPTLKLIVDREREIKAFDPEAYWELYGNLTKSGGDPFEARYFYLNDEGNEAERVWN 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
DVA + + V D+ + + P NT ++ A S LG+ Q AM LAE
Sbjct: 255 GDVAEVLTEAFDAADEAVVDDVRRRTRTDDPPTPFNTTAFIRAAGS-LGHSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
LYT G+++YPRT++T YP D R + L+ +G + LL + +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPEDLDPRELIEELSVASTFGKDAKSLLEQEEIEPTEGDEETT 373
Query: 183 DHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + SA++ L +D W +Y + + FL T +
Sbjct: 374 DHPPIHPTGELPSASD--LSEDEWEVYELIVRRFLATCA 410
>gi|167524627|ref|XP_001746649.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774919|gb|EDQ88545.1| predicted protein [Monosiga brevicollis MX1]
Length = 1562
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 14/191 (7%)
Query: 39 WTLHPYLVQNG--YELKLEWERQKLFDFDVATMFQKLVMQDRI----LEVIDISEKQESK 92
+ LH + G Y ++ W R ++FD VA V+ DR V+D+ +Q SK
Sbjct: 219 YVLHQEQSEAGDDYNVEFSWHRGRVFDEQVAG-----VLADRCEPEAARVVDVQSRQRSK 273
Query: 93 VRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLS 152
RP GL T + K+AS P ++ AE+LY QG +SYPRTE+ + SS D R +
Sbjct: 274 YRPVGLTTTEMQKIASRRFKIAPADSLSAAEKLYQQGILSYPRTETNKFDSSIDLRPMVE 333
Query: 153 ALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQ 211
A + ++G + LL PR+G + + HPPI P +S ++ G++ ++Y V +
Sbjct: 334 VFAQHSLYGAFASSLLEGQGPTPRNGNKSDEAHPPIHPTKSVN-NLSGREQ-QIYDLVTR 391
Query: 212 HFLGTVSPDCK 222
HFL S D +
Sbjct: 392 HFLACCSRDAR 402
>gi|156381054|ref|XP_001632081.1| predicted protein [Nematostella vectensis]
gi|156219132|gb|EDO40018.1| predicted protein [Nematostella vectensis]
Length = 940
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 10/215 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY Q+ F PE+F+ + ++ W+R +LF
Sbjct: 205 LISYGSCQFPTLGFVVERYKQVQQFVPEQFFKIKVSHETPDGQVDFVWKRGRLFHRLPCL 264
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ ++ ++ +V+ S + +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 265 ILYQMCLESPTAKVLSTSSRPKSKWRPLPLDTVELEKLASRKLHINAKETMKIAEKLYTQ 324
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G S TE+T F S ++ + +LA G PR G+ + HPPI
Sbjct: 325 GRYSVTGTETTT------FNAVESMISYIEFVTGFASDVLANG-PNPRQGSKTDNAHPPI 377
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P + T ++ G D RLY ++ +HFL S D +
Sbjct: 378 HPTQ-YTNNLQGNDK-RLYEFIVRHFLACCSQDAQ 410
>gi|448419687|ref|ZP_21580531.1| DNA topoisomerase I [Halosarcina pallida JCM 14848]
gi|445674601|gb|ELZ27138.1| DNA topoisomerase I [Halosarcina pallida JCM 14848]
Length = 835
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 11/221 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q PTL V R +I +F PE +W L L + + ++ E ++++D
Sbjct: 195 GRVQGPTLKLIVDREREIDAFDPEDYWELFADLEKGSESFEAQYFYLDEDDNEAERVWDG 254
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
D A + + V + + + P NT ++ A S +GY Q AM +AE
Sbjct: 255 DDAEAAYETLRGAETATVTSVRRRTRTDDPPAPFNTTQFIRAAGS-IGYSAQRAMSIAED 313
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+++YPRT++T YP D R L A N + + E LL + +P +G + D
Sbjct: 314 LYTAGYMTYPRTDNTVYPEDLDPRELLDAFTANRTFAEDAESLLDQEEIEPTAGDNETTD 373
Query: 184 HPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
HPPI P + L +D W +Y V + F TV+ ++
Sbjct: 374 HPPIHPTGELPSRADLTEDEWEVYELVVRRFFATVAESAEW 414
>gi|73669895|ref|YP_305910.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro]
gi|72397057|gb|AAZ71330.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro]
Length = 771
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 105/213 (49%), Gaps = 10/213 (4%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN--GYELKLEWERQKLFDFD 65
+ L G Q+PTL V R + F P +W ++ L QN G + ++ D
Sbjct: 194 MFLSVGRVQSPTLSLIVDREKERNVFVPTPYWEIYAEL-QNTEGKTFSAQHSTRRFLDKK 252
Query: 66 VAT-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
AT F+KL + E+ I + +++ P NT + A+S +G P AM++AE
Sbjct: 253 EATKAFKKL---GKKAELKGIEKGKKTDQPPAPFNTTGFISAANS-IGLSPANAMRIAEA 308
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGD 183
LYT G+ISYPRT++T YP + D R + P + +Y + LL + P R + D
Sbjct: 309 LYTNGYISYPRTDNTVYPETLDLRAQIEIFKEGP-FKEYADALLEKAELIPTRGKKETTD 367
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGT 216
HPPI P A E L +D W++Y V + F T
Sbjct: 368 HPPIFPASLAKESDLKEDEWKVYELVVRRFFAT 400
>gi|389603297|ref|XP_001568961.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505799|emb|CAM44094.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 951
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 20/229 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V +L +GPCQ PTLGF V+RY + F PE F+TL VQ+G + K R L+D
Sbjct: 195 AEVPGVLSFGPCQFPTLGFVVRRYWKQQGFVPEDFFTLQ---VQHG-DTKFYSSRGSLYD 250
Query: 64 FDVATMFQKLVMQDRILE-----VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
AT+ + ++Q E + ++ ++ + P L TV + K+A++ L +
Sbjct: 251 QVAATLIYEDMLQAAAAEGHKGRITNVQQRPSRRRPPVPLATVIMQKLAATHLRISSERC 310
Query: 119 MQLAERLYTQGFISYPRTESTAYP-SSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-- 175
M LAE LY +G ISYPRTE+ +Y + + NP +Y +LA+ A+
Sbjct: 311 MTLAESLYQEGLISYPRTETDSYTFQESELLELIRLQIANPDVAEYATAMLADIAARVRP 370
Query: 176 --RSGTDAGDHPPITPMRS--ATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
R G D HPPI P ++ AT D G LY+ + +HFL ++SPD
Sbjct: 371 PLRGGHDDKAHPPIHPTKAWNATRDERGS----LYNLIVRHFLASLSPD 415
>gi|91772172|ref|YP_564864.1| DNA topoisomerase I [Methanococcoides burtonii DSM 6242]
gi|91711187|gb|ABE51114.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
Length = 743
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 6/218 (2%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYEL-KLEWERQKLFDFDV 66
L L G Q+PTL V + + +F + +W ++ L N L ++ + K ++ +
Sbjct: 192 LFLSVGRVQSPTLALIVDKEKERQAFVSKPYWEVNATLKDNDDALVNVQHKNSKFWEKEE 251
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + V+ D+ S K+ KV P NT + ASS +G+ AM++AE LY
Sbjct: 252 ADAVME-VIGDKASVSSVDSSKKTDKV-PTPFNTTEFIGAASS-IGFTASNAMRIAESLY 308
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDHP 185
T GFISYPRT++T YP+S D R + + P + +Y ++LLA+ P R + DHP
Sbjct: 309 TNGFISYPRTDNTVYPASIDLRAQIEIFSKGP-FREYAQKLLAKDELVPTRGKKETTDHP 367
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PI P A + L + W+LY V + F T + + ++
Sbjct: 368 PIYPASLAKKSELNEQDWKLYELVVRRFFATFADEAEW 405
>gi|448694566|ref|ZP_21697066.1| DNA topoisomerase I [Halobiforma lacisalsi AJ5]
gi|445785151|gb|EMA35946.1| DNA topoisomerase I [Halobiforma lacisalsi AJ5]
Length = 844
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 13/218 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F PE +W L L ++ + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDREREIQAFDPEDYWELFADLAKDDTSFEAQYFYRDEDGNEAERVWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A + + V+D++ + + P NT ++ A+ ALGY Q AM +AE
Sbjct: 251 ATADEVYETLADREAATVVDVNRRTRTDTPPTPFNTTQFIR-AAGALGYSAQRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL--AEGYAKP-RSGTDA 181
LYT G+I+YPRT++T YP + L + V GD E LL A+ +P R +
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLEPADLLDEFVGHSVLGDSAESLLEDADDEIEPTRGDEET 369
Query: 182 GDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + + D W ++ V + F TV+
Sbjct: 370 TDHPPIHPTGEIPSRGDVSDDEWEIFELVVRRFYATVA 407
>gi|448301636|ref|ZP_21491627.1| DNA topoisomerase I [Natronorubrum tibetense GA33]
gi|445583552|gb|ELY37882.1| DNA topoisomerase I [Natronorubrum tibetense GA33]
Length = 847
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 18/222 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTL-----------HPYLVQNGYELKLEWERQKL 61
G Q+PTL V R +I +F PE +W L P+ Q Y + E +++
Sbjct: 191 GRVQSPTLKLIVDREREIEAFDPETYWELFADLRKREGETEPFDAQYFYRDEDGNEAERV 250
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
++ A+ + + + V+D++ + + P NT ++ A+SA+GY + AM +
Sbjct: 251 WEETAASEVYETLAERDSATVVDVNRRTRTDTPPTPFNTTQFIR-AASAIGYSAKRAMSI 309
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSG-T 179
AE LYT G+I+YPRT++T YP D L +P GD E LL ++ P G
Sbjct: 310 AEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPTLGDSAESLLESDDEIVPTEGDE 369
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
+ DHPPI P + S D + D W +Y V + F TV+
Sbjct: 370 ETTDHPPIHPTGEIPSRGGD-VSDDEWEVYELVVRRFYATVA 410
>gi|212223461|ref|YP_002306697.1| topA [Thermococcus onnurineus NA1]
gi|212008418|gb|ACJ15800.1| topA [Thermococcus onnurineus NA1]
Length = 717
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 5/211 (2%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
++L G Q PTL F V R +I +FKP +W + L +NG + +E++++ D + A
Sbjct: 194 MVLSTGRVQGPTLKFLVDREKEIQNFKPTPYWVIKMVLEKNGQQYTAVYEKERILDENEA 253
Query: 68 T-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ ++ +E +D+ KQ+++ P + L + A SA GY P+ ++LA++LY
Sbjct: 254 KRIVEEAKKGPAFVEKVDV--KQQNRHPPVPFDLGTLQREAYSAFGYSPKKTLELAQKLY 311
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHP 185
+G SYPRT S P + +FR L LA P + + LL + KP G D HP
Sbjct: 312 ERGLTSYPRTSSQKLPKNLNFRSILQNLAKLPEYKPFAHELLGKERLKPVEGKKDDPAHP 371
Query: 186 PITPMRSATE-DMLGKDAWRLYSYVCQHFLG 215
I P + L KD LY + + FL
Sbjct: 372 AIYPTGELPKPGELTKDEANLYDLIVRRFLA 402
>gi|452211571|ref|YP_007491685.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
gi|452101473|gb|AGF98413.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
Length = 752
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 8/212 (3%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWERQKLFDFDV 66
+ L G Q+PTL V R + F P +W +H L G + ++ D +
Sbjct: 194 MFLSVGRVQSPTLSLIVDREKERNIFVPTPYWEIHVELEDAAGETFSAQHSTRRFLDKEE 253
Query: 67 AT-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A+ +F+KL + E+ +I + ++ P NT + A+S +G P AM++AE L
Sbjct: 254 ASKVFRKL---GKKAELKEIEKGTKTDQPPTPFNTTGFISAANS-IGLSPSNAMRIAESL 309
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDH 184
YT G+ISYPRT++T YP + D R + P + +Y LL + P R + DH
Sbjct: 310 YTNGYISYPRTDNTVYPDTLDLRAQIEIFKEGP-FKEYANTLLEKPELVPTRGKKETTDH 368
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGT 216
PPI P A E L +D W++Y V + F T
Sbjct: 369 PPIFPASLAKESDLKEDEWKVYELVVRRFFAT 400
>gi|383622530|ref|ZP_09948936.1| DNA topoisomerase I, partial [Halobiforma lacisalsi AJ5]
Length = 709
Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats.
Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 13/218 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F PE +W L L ++ + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDREREIQAFDPEDYWELFADLAKDDTSFEAQYFYRDEDGNEAERVWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A + + V+D++ + + P NT ++ A+ ALGY Q AM +AE
Sbjct: 251 ATADEVYETLADREAATVVDVNRRTRTDTPPTPFNTTQFIR-AAGALGYSAQRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL--AEGYAKP-RSGTDA 181
LYT G+I+YPRT++T YP + L + V GD E LL A+ +P R +
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLEPADLLDEFVGHSVLGDSAESLLEDADDEIEPTRGDEET 369
Query: 182 GDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + + D W ++ V + F TV+
Sbjct: 370 TDHPPIHPTGEIPSRGDVSDDEWEIFELVVRRFYATVA 407
>gi|397775425|ref|YP_006542971.1| DNA topoisomerase [Natrinema sp. J7-2]
gi|397684518|gb|AFO58895.1| DNA topoisomerase [Natrinema sp. J7-2]
Length = 826
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 11/216 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F+PE++W L L ++ + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDREREIQAFEPEEYWELFADLRKDETNFEAQYFYRDEDDNEAERIWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
VA + + + V+D++ + + P NT ++ A+SA+GY + AM +AE
Sbjct: 251 PVADEVYETLADGDVATVVDVTRRTRTDTPPEPFNTTQFIR-AASAIGYSAKRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP D L ++P GD E LL P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEDLLDEFVSHPSLGDSAESLLEADEISPTEGDEETTD 369
Query: 184 HPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + + D W +Y V + F TV+
Sbjct: 370 HPPIHPTGEIPSRGDISDDEWEVYELVVRRFYATVA 405
>gi|448337838|ref|ZP_21526911.1| DNA topoisomerase I [Natrinema pallidum DSM 3751]
gi|445624798|gb|ELY78171.1| DNA topoisomerase I [Natrinema pallidum DSM 3751]
Length = 843
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 28/233 (12%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-------------------------Q 47
G Q+PTL V R +I +F PE +W + L Q
Sbjct: 191 GRVQSPTLKLIVDREREIEAFDPEDYWEIFADLTKSEAQRASETSSGEEPRDDDTAFESQ 250
Query: 48 NGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVA 107
Y + + E +++++ D+A + + + V+D++ + + P NT ++ A
Sbjct: 251 YFYRDEDDNEAERVWEEDIADEVYETLAERESATVVDVTRRTRTDTPPEPFNTTQFIR-A 309
Query: 108 SSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERL 167
+SA+GY + AM +AE LYT G+I+YPRT++T YP D L ++P GD E L
Sbjct: 310 ASAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDEFVSHPSLGDSAESL 369
Query: 168 LAEGYAKPRSG-TDAGDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVS 218
L P G + DHPPI P + + D W +Y V + F TV+
Sbjct: 370 LEADEITPTEGDEETTDHPPIHPTGEIPSRGDISDDEWEVYELVVRRFYATVA 422
>gi|448481877|ref|ZP_21605192.1| DNA topoisomerase I [Halorubrum arcis JCM 13916]
gi|445821576|gb|EMA71365.1| DNA topoisomerase I [Halorubrum arcis JCM 13916]
Length = 865
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L L ++G +E + + ER++++D
Sbjct: 195 GRVQGPTLKLIVDREREIQAFDPESYWELTGELAKSGGDPFEARYFYLNDEGNERERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
DVA + + + V D+ + ++ P NT ++ A S LGY Q AM LAE
Sbjct: 255 GDVAEVLTEALGAADAATVDDVDRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG-DYVERLLAEGYAKPRSG-TDA 181
LYT G+++YPRT++T YP + + L+ +G D L + +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPEDLEPAELIEELSAASTFGTDAASLLDGDDEIEPTEGDEET 373
Query: 182 GDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + SA++ L D W +Y + + FL T +
Sbjct: 374 TDHPPIHPTGELPSASD--LSDDEWEVYELIVRRFLATCA 411
>gi|326434142|gb|EGD79712.1| DNA topoisomerase III [Salpingoeca sp. ATCC 50818]
Length = 1137
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 99/204 (48%), Gaps = 8/204 (3%)
Query: 27 YLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDIS 86
Y + F PE FW + + W R +++D DV ++F +L +I V +++
Sbjct: 176 YRERERFIPEDFWRIIAKHRCEEMTVDFNWSRYRVYDEDVCSVFLELCEDAKIATVTNVT 235
Query: 87 EKQE-----SKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAY 141
+ E K RP GL T L K+AS P A+ AE LY +G ISYPRTE+ +
Sbjct: 236 GEFEMCRPRDKWRPVGLTTTELQKIASRRFRMAPTEALSTAESLYQKGLISYPRTETDMF 295
Query: 142 PSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSGTDAGD-HPPITPMRSATEDMLG 199
S + + L + WG + + L+ G PR+G + + HPPI P ++ L
Sbjct: 296 DKSINLTRLVENLTAHTEWGAFAQTLVPPNGAPSPRNGRNTDEAHPPIHPTKNIAPAALA 355
Query: 200 KDAWR-LYSYVCQHFLGTVSPDCK 222
D R +Y VC+HFL VS + K
Sbjct: 356 SDKERKIYELVCRHFLACVSRNAK 379
>gi|284164738|ref|YP_003403017.1| DNA topoisomerase I [Haloterrigena turkmenica DSM 5511]
gi|284014393|gb|ADB60344.1| DNA topoisomerase I [Haloterrigena turkmenica DSM 5511]
Length = 827
Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 14/218 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F PE +W L L + + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDREREIQAFDPETYWELFGDLTKEDTTFEAQYFYRDEDDNEAERVWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
VA + + + V+D++ + + P NT ++ A+ A+GY + AM +AE
Sbjct: 251 AVADEVYETLAERDSATVVDVNRRTRTDTPPEPFNTTQFIR-AAGAIGYSAKRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP D L ++P G+ E LL P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEELLDDFVSHPTLGESAESLLEADEIVPTEGDEETTD 369
Query: 184 HPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + S D + D W +Y V + F TV+
Sbjct: 370 HPPIHPTGEIPSRGGD-VSDDEWEVYELVVRRFYATVA 406
>gi|410670057|ref|YP_006922428.1| DNA topoisomerase I [Methanolobus psychrophilus R15]
gi|409169185|gb|AFV23060.1| DNA topoisomerase I [Methanolobus psychrophilus R15]
Length = 741
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 6/212 (2%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFD 65
+ L G Q+PTL V+R + +F K+W L L + G E + + ++ +
Sbjct: 189 NMFLSVGRVQSPTLALIVEREKERDAFVARKYWELSASLRTRKGEVFVAEHKTSRFWEKE 248
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ ++ I S K + + P NT + AS+ +GY AM +AE L
Sbjct: 249 EVDSALSALKDTAVVSSITTSTKTDKQ--PTPFNTTEFISAAST-MGYTASSAMNIAESL 305
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDH 184
Y GFISYPRT++T YP S D R + P + +Y E+LLA P R + DH
Sbjct: 306 YMNGFISYPRTDNTVYPESIDLRAQIEIFTKGP-FKEYAEKLLAMKELVPTRGKKETTDH 364
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGT 216
PPI P A + L + W+LY V + F T
Sbjct: 365 PPIYPASLAKKSELSEQEWKLYELVVRRFFAT 396
>gi|240103365|ref|YP_002959674.1| DNA topoisomerase I (topA) [Thermococcus gammatolerans EJ3]
gi|239910919|gb|ACS33810.1| DNA topoisomerase I (topA) [Thermococcus gammatolerans EJ3]
Length = 712
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 11/214 (5%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
++L G Q PTL F V+R +I +FKP+ +W + L +N + +E+ K++D + A
Sbjct: 194 MVLSTGRVQGPTLKFLVEREKEIQNFKPKPYWVIKMILEKNNSQYTATYEKDKIWDEEEA 253
Query: 68 TMFQKLVMQDR----ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+++V + + +E +++ KQ+ + P + L + A SA GY P+ ++LA+
Sbjct: 254 ---KRIVSEAKKGPAFVEKVEV--KQQKRNPPVPFDLGTLQREAYSAFGYSPKKTLELAQ 308
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG- 182
RLY +G SYPRT S P + +FR L +A P + + LL +G KP G
Sbjct: 309 RLYERGLSSYPRTSSQKLPKNLNFRSILQNIAKLPEYKPFAHELLGKGTFKPVEGKKEDP 368
Query: 183 DHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLG 215
HP I P + L KD LY + + FL
Sbjct: 369 AHPAIYPTGELPKPGELTKDEQNLYDLIVRRFLA 402
>gi|409722530|ref|ZP_11269978.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
gi|448724451|ref|ZP_21706958.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
gi|445785768|gb|EMA36554.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
Length = 841
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 69/215 (32%), Positives = 104/215 (48%), Gaps = 11/215 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F PE +W L L + ++++ +++D
Sbjct: 192 GRVQSPTLKLIVDREREIEAFDPETYWELFADLATDEAAFEVQYFDANEGRGTDRVWDES 251
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+A + + + V +S + + P NT ++ A S LGY AM LAE L
Sbjct: 252 LAESVYEALQETSTATVEKVSRRTRTDDPPDPFNTTQYIRAAGS-LGYSASRAMSLAEEL 310
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
YT G+I+YPRT++T YP D LS L+ + +G+ E LL +G P G + DH
Sbjct: 311 YTSGYITYPRTDNTVYPDDLDIEDLLSDLSTHREFGEDAEDLL-DGDCTPTEGDEETTDH 369
Query: 185 PPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVS 218
PPI P + LG D +Y V + FL TV+
Sbjct: 370 PPIHPTGELPSGSALGDDEREIYELVVRRFLATVA 404
>gi|288931982|ref|YP_003436042.1| DNA topoisomerase I [Ferroglobus placidus DSM 10642]
gi|288894230|gb|ADC65767.1| DNA topoisomerase I [Ferroglobus placidus DSM 10642]
Length = 653
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT- 68
L G Q+PTL V R +I FKPE +W + + G E K+ ++ D + A
Sbjct: 187 LSAGRVQSPTLRIIVDREKEIREFKPEPYWEITAKF-ERGVEAKIP---RRFKDKEEAKR 242
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+++K+ D +++ + E+ E K P NT LK AS + P AM +AE LY
Sbjct: 243 VYEKI--GDGVVKSFEEVERVEKK--PIPFNTTEFLKEASKFMP--PDKAMAIAENLYIN 296
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRT++T YP S + + + + D R+ E R + DHPPI
Sbjct: 297 GYISYPRTDNTVYPQSLNLKKLVKMFLGSEF--DKEARIALEDMKPSRGKKETKDHPPIH 354
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P A L KD W +Y + + FL T++PD
Sbjct: 355 PTALAERKELSKDEWIIYELIVRRFLATLAPDA 387
>gi|323456520|gb|EGB12387.1| hypothetical protein AURANDRAFT_20044, partial [Aureococcus
anophagefferens]
Length = 627
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 12/225 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFW--TLHPYLVQNGYELKLEWERQKLFDFDV 66
++ YGPCQ PTLGF V R +I + FW + ++ +W R+++FD
Sbjct: 217 VVSYGPCQFPTLGFIVARQQEIDAHDARDFWRVDMETGGSAGAPRVRWDWRRKRVFDVGA 276
Query: 67 ATMFQKLVMQDRILEVID-ISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A +F + + V++ + K +K RP L+T+ L K AS L G M++AE L
Sbjct: 277 AHVFFDGCVAGKDQGVLEKVEAKPAAKPRPLPLSTLELQKRASRWLKLGSAETMEVAEAL 336
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL------AEGYAKPRSGT 179
Y +G++SYPRTE+ + + D R + + +G + +LL + PR G
Sbjct: 337 YQRGYVSYPRTETELFRDTCDVRELVDRQRPDGRFGTFAAQLLDLPPDDRRAFLWPRQGA 396
Query: 180 -DAGDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
D HPPI P ++ A ++ GK+A +++ + +HFL + D +
Sbjct: 397 KDDEAHPPIHPTKAVAANELQGKEA-KVFELIARHFLACCARDAR 440
>gi|319921909|gb|ADV78573.1| DNA topoisomerase III alpha [Leishmania donovani]
Length = 947
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 20/229 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A + +L +GPCQ PTLGF V+RY Q + + F+TL +Q+G + K R ++D
Sbjct: 195 AAIPGVLSFGPCQFPTLGFVVRRYWQQQALSRKDFFTLQ---LQHG-DTKFHSSRGSMYD 250
Query: 64 FDVATMFQKLVMQDRILE-----VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
AT+ + ++Q E + ++ ++ + P L TV + K+A++ L +
Sbjct: 251 QVAATLIYEDMLQAAAAEGHKGRITNVQQRPSHRRPPVPLATVVMQKLAATHLRIPSERC 310
Query: 119 MQLAERLYTQGFISYPRTESTAYP-SSFDFRGTLSALANNPVWGDYVERLLAE--GYAKP 175
M LAE LY +G ISYPRTE+ +Y + + N +Y +LA+ +P
Sbjct: 311 MTLAESLYQEGLISYPRTETDSYTFQESELLELVRVQTANADVAEYATAMLADIATRVRP 370
Query: 176 --RSGTDAGDHPPITPMRS--ATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
R G D HPPI P ++ AT+D G RLY+ + +HFL ++SPD
Sbjct: 371 PLRGGHDDKAHPPIHPTKAWNATQDERG----RLYNLIVRHFLASLSPD 415
>gi|21229178|ref|NP_635100.1| DNA topoisomerase I [Methanosarcina mazei Go1]
gi|20907743|gb|AAM32772.1| DNA topoisomerase I [Methanosarcina mazei Go1]
Length = 752
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 8/212 (3%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWERQKLFDFDV 66
+ L G Q+PTL V R + F P +W +H L G + ++ D +
Sbjct: 194 MFLSVGRVQSPTLSLIVDREKERNIFVPTPYWEIHVELEDAAGETFSAQHSTRRFLDKEE 253
Query: 67 AT-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A+ +F+KL + E+ +I + ++ P NT + A+S +G P AM++AE L
Sbjct: 254 ASKVFRKL---GKKAELKEIEKGTKTDQPPTPFNTTGFISAANS-IGLSPANAMRIAESL 309
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGDH 184
YT G+ISYPRT++T YP + D + + P + +Y LL + P R + DH
Sbjct: 310 YTNGYISYPRTDNTVYPDTLDLKAQIEIFKEGP-FKEYANTLLEKPELVPTRGKKETTDH 368
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGT 216
PPI P A E L +D W++Y V + F T
Sbjct: 369 PPIFPASLAKESDLKEDEWKVYELVVRRFFAT 400
>gi|448365799|ref|ZP_21554053.1| DNA topoisomerase I [Natrialba aegyptia DSM 13077]
gi|445654408|gb|ELZ07259.1| DNA topoisomerase I [Natrialba aegyptia DSM 13077]
Length = 826
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 19/222 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTL--------HPYLVQNGYELKLEWERQKLFDF 64
G Q+PTL V R +I +F PE +W L + Q Y + + E +++++
Sbjct: 191 GRVQSPTLRLIVDREREIQAFDPEDYWELVADVAKGEEAFEAQYFYYDEDDNEAERVWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A + + Q V+D++ + + P NT ++ A S LGY + AM +AE
Sbjct: 251 ATAEEVFETLSQRETATVVDVNRRTRTDSPPAPFNTTQFIRAAGS-LGYSAKRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP D L +P G+ E LL P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPSLGESAESLLDADDIVPTEGDEETTD 369
Query: 184 HPPI-----TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P R D D W ++ V + F TV+ D
Sbjct: 370 HPPIHPTGEIPARGDVSD----DEWEIFELVVRRFYATVAAD 407
>gi|302336222|ref|YP_003801429.1| DNA topoisomerase I [Olsenella uli DSM 7084]
gi|301320062|gb|ADK68549.1| DNA topoisomerase I [Olsenella uli DSM 7084]
Length = 839
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 96/212 (45%), Gaps = 7/212 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG-----YELKLEWERQKLFDFDVA 67
G QTPTL V++ + +F PE +W L L G K + D A
Sbjct: 241 GRVQTPTLALVVEKERERQAFVPEDYWVLSGMLAPAGTADEDARFKATHTTARFKDQAAA 300
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
V R V + ++ + P NT +L + A+++ G P M+LAE LY
Sbjct: 301 QAAWSHVRDARTATVTAVEKRSRTTRPPAPFNTTSL-QTAAASEGISPARTMRLAESLYM 359
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDAGDHPP 186
G ISYPR ++T YP S D RG + L+ P + LL G R + DHPP
Sbjct: 360 DGLISYPRVDNTVYPKSLDLRGCVRMLSQVPQYRAACRELLDAGPLHATRGKQETTDHPP 419
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
I P +A L AW+LY+ + + FL T+S
Sbjct: 420 IYPTAAADPGKLEGAAWKLYNLIARRFLATLS 451
>gi|407399794|gb|EKF28434.1| DNA topoisomerase III, putative [Trypanosoma cruzi marinkellei]
Length = 917
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 19/223 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L +GPCQ PTLGF V+R+ + F E F+TL ++++G + R +FD AT
Sbjct: 200 VLSFGPCQIPTLGFVVRRHREREGFVQEDFFTL---VMRHGQTV-FHGCRGSVFDQIAAT 255
Query: 69 MFQKLVMQ----DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ +++++ + V+D+ + + P L TV L K+A++ L + M AE
Sbjct: 256 LVLEMMLESAGPNAEALVVDVVRRPTRRHPPVPLATVALQKLAATHLHISSEQCMTWAES 315
Query: 125 LYTQGFISYPRTESTAYPSSFD-FRGTLSALANNPVWGDYVERLL---AEGYAKP-RSGT 179
LY +GFISYPRTE+ ++ + D R +NP DYV +L + + +P + G
Sbjct: 316 LYQEGFISYPRTETDSFSFTDDELREIAGVQRDNPEVADYVGAMLDDPSNKFRRPLKGGH 375
Query: 180 DAGDHPPITPMR--SATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
D HPPI P + A +D G LY+ + +HFL +SPD
Sbjct: 376 DDKAHPPIYPTKLMRAKQDSRGA----LYNLIVRHFLACLSPD 414
>gi|123431270|ref|XP_001308100.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
gi|121889762|gb|EAX95170.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
Length = 523
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 13/220 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFK--PEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+L YGPCQ PTLGF V +L+ + PEK W + ++ + L+++W R+ LF V
Sbjct: 74 VLSYGPCQLPTLGFVVHSFLKAQKYNNYPEKCWKIDVHIKKGDKSLQIKWNRKHLF-CKV 132
Query: 67 ATMFQKLVMQD---RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ Q M D I+ I I+E + +K +P L T L L AM + E
Sbjct: 133 SCFGQFASMFDFPSAIVTDIQITESEVTKPQP--LTTATHLINCCKYLKLKASRAMAITE 190
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG--TDA 181
LY GFISYPRTE+ ++P +F+F L+ L + G +L KP G TD
Sbjct: 191 NLYNNGFISYPRTETDSFPDNFNFVDILTNLTIDREVGGMAYEVL-NSLQKPLKGNCTDN 249
Query: 182 GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
H PI P+ +E K+ ++ +C+HF +S +C
Sbjct: 250 A-HTPIYPIVCPSE-FNSKEEKDVFYLICRHFFAVLSSNC 287
>gi|76801263|ref|YP_326271.1| DNA topoisomerase I [Natronomonas pharaonis DSM 2160]
gi|76557128|emb|CAI48702.1| DNA topoisomerase I [Natronomonas pharaonis DSM 2160]
Length = 832
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 12/216 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F P+ +W L L + G + ++ E+++++D
Sbjct: 190 GRVQSPTLKLIVDREREIEAFDPDDYWELFADLAREGTTFEAQYFYREDGTEQERVWDES 249
Query: 66 VA-TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A T F+ L + V + ++ + P NT + A++ +G Q AM +AE
Sbjct: 250 GAETAFETLRNAGTAV-VESVRRRRRTDEPPEPFNTTQYIS-AANGIGLSAQRAMSVAEE 307
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGD 183
LYT G+I+YPRT++T YP D LSA ++ ++ D E L + +P +G + D
Sbjct: 308 LYTAGYITYPRTDNTVYPDDLDPEALLSAFTDHYLFADDAEMLRSADDIEPTAGDEETTD 367
Query: 184 HPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P +D L D W +Y V +HF TV+
Sbjct: 368 HPPIHPTGEIPNKDDLSDDEWEVYELVVRHFFATVA 403
>gi|389846116|ref|YP_006348355.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|448616266|ref|ZP_21664976.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|388243422|gb|AFK18368.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|445750921|gb|EMA02358.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
Length = 855
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ------------K 60
G Q PTL V R +I +F PE +W L L ++ +E Q +
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPEDYWELFSKLTKDADGAAESFEAQYFYLDDDGTEAER 254
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++D + A + ++ EV + + + P NT ++ A S +GY Q AM
Sbjct: 255 IWDEEAAESAYETLLDVDAAEVTAVKRRTRTDKPPAPFNTTQFIRAAGS-IGYSAQRAMS 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D R L A + + + + LL + +P G
Sbjct: 314 IAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAKSLLEQEEIEPTEGDN 373
Query: 180 DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ DHPPI P + SA++ L +D W +Y V + F TV+ +
Sbjct: 374 ETTDHPPIHPTGELPSASD--LTEDEWDVYELVVRRFFATVAENA 416
>gi|448343257|ref|ZP_21532197.1| DNA topoisomerase I [Natrinema gari JCM 14663]
gi|445623652|gb|ELY77052.1| DNA topoisomerase I [Natrinema gari JCM 14663]
Length = 826
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 11/216 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F+PE++W L L ++ + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDREREIQAFEPEEYWELFADLRKDETSFEAQYFYRDEDDNEAERIWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
VA + + + V+D++ + + P NT ++ A+SA+GY + AM +AE
Sbjct: 251 PVANEVYETLADGDVATVVDVTRRTRTDTPPEPFNTTQFIR-AASAIGYSAKRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGD 183
LYT G+I+YPRT++T YP D L ++P GD E LL P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEDLLDEFVSHPSLGDSAESLLEADEITPTEGDEETTD 369
Query: 184 HPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + + D W +Y V + F TV+
Sbjct: 370 HPPIHPTGEIPSRGDVSDDEWEVYELVVRRFYATVA 405
>gi|296088524|emb|CBI37515.3| unnamed protein product [Vitis vinifera]
Length = 373
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 80/145 (55%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
L+L YGPCQ PTLGF V+RY +I S +PE+FWT++ + W R LFD+
Sbjct: 208 NLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFWTINCSHKSDEGTSTFNWMRAHLFDYTC 267
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + ++ +Q+ V + ++++ K P LNT+ L K AS + M++AE LY
Sbjct: 268 AVIIYEMCIQEPTATVTKVRQQEKLKYPPHPLNTIELEKRASRYFHMSSEHTMKVAEDLY 327
Query: 127 TQGFISYPRTESTAYPSSFDFRGTL 151
GFISYPRTE+ + D L
Sbjct: 328 QTGFISYPRTETDYFSERTDLHSYL 352
>gi|11499394|ref|NP_070633.1| DNA topoisomerase I [Archaeoglobus fulgidus DSM 4304]
gi|14423959|sp|O28469.1|TOP1_ARCFU RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|2648740|gb|AAB89443.1| DNA topoisomerase I (topA) [Archaeoglobus fulgidus DSM 4304]
Length = 663
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 20/217 (9%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL----HPYLVQNGYELKLEWERQKLFDFD 65
L G QTPTL V R L+I +FKPEK++ + ++ ++ + E +KLF
Sbjct: 192 LSVGRVQTPTLRLIVDRELEIQNFKPEKYYEIFAEFEGFIAKHPKRYGSKEEAEKLFAKI 251
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
T +V + + ++ + RP NT L+ AS + P AM +AE L
Sbjct: 252 GETA-----------KVEEFTRRRMEENRPTPFNTTEFLREASKFMS--PHKAMNIAETL 298
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
Y G+ISYPRT++T YP + + +SAL++ V+ + +L++ P G + DH
Sbjct: 299 YMNGYISYPRTDNTVYPPTINLIEIVSALSS--VFPREAQIVLSQDKITPSRGRRETKDH 356
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
PPI P A L KD W +Y V + FL T++P
Sbjct: 357 PPIYPTGVAKRGELSKDEWTIYELVVRRFLATLAPKA 393
>gi|429966189|gb|ELA48186.1| hypothetical protein VCUG_00424 [Vavraia culicis 'floridensis']
Length = 849
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/214 (30%), Positives = 114/214 (53%), Gaps = 11/214 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VA 67
++ YG CQ PTLGF V+R L+ F EKF+TL +V++ W R +FD + V
Sbjct: 188 VISYGSCQIPTLGFVVERALERKDFVAEKFFTLKISIVKDRMVNIFSWVRGNIFDKNCVL 247
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
F+ L + V ++++ ++ RP L TV++ +V S ++ MQ+AE LY
Sbjct: 248 YFFRYLTDETSKAVVTNVNKGNVTRFRPLPLRTVDMQRVLSKSM--PSHKVMQVAEALYQ 305
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPP 186
+G ISYPRTE+ ++P++FD+ + + + V+ +G PR+G + H P
Sbjct: 306 RGIISYPRTETDSFPANFDYNKVKTEILKGNRYN--VQNTTFKG---PRNGRNNDFAHLP 360
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
I P++ + L D +Y+++ F+ ++S D
Sbjct: 361 IYPLKHPSN--LAVDEKMVYNFIADRFIASISDD 392
>gi|448531338|ref|ZP_21621025.1| DNA topoisomerase I [Halorubrum hochstenium ATCC 700873]
gi|445707295|gb|ELZ59153.1| DNA topoisomerase I [Halorubrum hochstenium ATCC 700873]
Length = 865
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 69/220 (31%), Positives = 111/220 (50%), Gaps = 17/220 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L L ++G +E + + ER++++D
Sbjct: 195 GRVQGPTLKLIVDREREIQAFDPEPYWELTGELAKSGGDPFEARYFYLNDEGNERERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
VA + + V D++ + ++ P NT ++ A S LGY Q AM LAE
Sbjct: 255 EGVAETLTEALDAADGANVDDVTRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYA-KPRSG-TDA 181
LYT G+++YPRT++T YP + ++ LA + +G L+ + +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPDDLEPEELIADLAESSTFGTDATSLIDDDREIEPTEGDEET 373
Query: 182 GDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + SA++ L D W +Y + + FL T +
Sbjct: 374 TDHPPIHPTGELPSASD--LSDDEWEVYELIVRRFLATCA 411
>gi|389852119|ref|YP_006354353.1| DNA topoisomerase I [Pyrococcus sp. ST04]
gi|388249425|gb|AFK22278.1| DNA topoisomerase I [Pyrococcus sp. ST04]
Length = 691
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 107/212 (50%), Gaps = 7/212 (3%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
++L G Q PTL F V+R +I +F P+ +W + +NG + +E+ K++D + A
Sbjct: 193 IVLSTGRVQGPTLKFLVEREREIQNFVPKPYWIIKLVFEKNGKKFTATYEKDKIWDENEA 252
Query: 68 TMFQKLVMQDRI--LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+++V++ + + V DI K++ + P + L + A SA G+ P+ + LA+ L
Sbjct: 253 ---KRIVLEAKKGPVRVADIDVKRQKRNPPVPFDLGTLQREAYSAFGFSPKKTLDLAQSL 309
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
Y +GF SYPRTES P + +FR + +A P + Y LL KP G D H
Sbjct: 310 YEKGFSSYPRTESQKLPKNLNFRYIIQNIAKMPEYRPYAHLLLGMPELKPVEGKKDDPAH 369
Query: 185 PPITPMRSATE-DMLGKDAWRLYSYVCQHFLG 215
P I P L KD +LY + + FL
Sbjct: 370 PAIYPTGEIPRPGDLTKDEAKLYDMIVRRFLA 401
>gi|320587954|gb|EFX00429.1| DNA topoisomerase [Grosmannia clavigera kw1407]
Length = 636
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 56 WERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGP 115
W R LFD + + ++ + EV+ + EK ++RP L TV L +A+ L
Sbjct: 218 WARGHLFDRASVIVLYERCLKAKKAEVVKVQEKPIKRMRPLPLTTVTLQSMATRFLHVTG 277
Query: 116 QMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNP-VWGDYVERLLAEG-YA 173
Q AM +AE LY +GFISYPRTE+ + + R + +P WG + LL EG +
Sbjct: 278 QQAMTMAETLYNKGFISYPRTETDRFDKGMNLRALVQKQTQDPQRWGAFARGLLDEGKFQ 337
Query: 174 KPRSGT-DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PRSG D HPPI P+ A +LG D RLY V + FL + D K
Sbjct: 338 WPRSGQHDDKAHPPIHPITYAAPSVLGPDEGRLYELVVRRFLACCADDAK 387
>gi|289582117|ref|YP_003480583.1| DNA topoisomerase [Natrialba magadii ATCC 43099]
gi|448282469|ref|ZP_21473755.1| DNA topoisomerase I [Natrialba magadii ATCC 43099]
gi|289531670|gb|ADD06021.1| DNA topoisomerase [Natrialba magadii ATCC 43099]
gi|445576011|gb|ELY30470.1| DNA topoisomerase I [Natrialba magadii ATCC 43099]
Length = 843
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 70/239 (29%), Positives = 105/239 (43%), Gaps = 40/239 (16%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTL------------------------------- 41
G Q+PTL V R +I +F PE +W L
Sbjct: 191 GRVQSPTLKLMVDREREIEAFDPEDYWELVADVAKGSEAQRASETSSGDEPRESEAFEAQ 250
Query: 42 HPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTV 101
+ Y ++G E + WE D +F+ L +D V+D++ + + P NT
Sbjct: 251 YFYRDEDGNEAERVWEEAVAED-----VFETLSQRD-TATVVDVNRRTRTDSPPAPFNTT 304
Query: 102 NLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG 161
++ A+SALGY + AM +AE LYT G+I+YPRT++T YP D L +P G
Sbjct: 305 QFIR-AASALGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPTLG 363
Query: 162 DYVERLLAEGYAKPRSG-TDAGDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
+ E LL +P G + DHPPI P + + D W ++ V + F TV+
Sbjct: 364 ESAESLLEADEIEPTEGDEETTDHPPIHPTGEIPSRGDVSDDEWEVFELVVRRFYATVA 422
>gi|374629454|ref|ZP_09701839.1| DNA topoisomerase I [Methanoplanus limicola DSM 2279]
gi|373907567|gb|EHQ35671.1| DNA topoisomerase I [Methanoplanus limicola DSM 2279]
Length = 935
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 12/219 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL G Q+PTL V R +I F P +W L ++ + + E R FD+
Sbjct: 190 ILSVGRVQSPTLAMIVDREKEIGEFVPVPYWMLS--IISEKDKEQFE-ARHTHGRFDLKE 246
Query: 69 MFQKLVMQDRILEVIDISEKQE---SKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ + + E ++++EK+E + P +T + VA+S LG AM++AE L
Sbjct: 247 EAESALSGTK--EPVEVTEKKEGSRTDKAPAPFDTTGYI-VAASRLGLSASNAMRVAEDL 303
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DH 184
Y G+ISYPRT++T YP S D +G L+ + + + E ++A P G DH
Sbjct: 304 YMNGYISYPRTDNTVYPDSLDIKGILNEIKKS--FRRDTEWVIANIRDTPTKGKKTSTDH 361
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PPI P +A L + +W++Y + + FL T+SPD ++
Sbjct: 362 PPIHPTGAAKPADLDEKSWKVYELIVRRFLATLSPDARW 400
>gi|448355410|ref|ZP_21544162.1| DNA topoisomerase I [Natrialba hulunbeirensis JCM 10989]
gi|445635563|gb|ELY88731.1| DNA topoisomerase I [Natrialba hulunbeirensis JCM 10989]
Length = 843
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 70/239 (29%), Positives = 105/239 (43%), Gaps = 40/239 (16%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTL------------------------------- 41
G Q+PTL V R +I +F PE +W L
Sbjct: 191 GRVQSPTLKLMVDREREIEAFDPEDYWELVADVAKGSEAQRASETSSGDEPRESEAFEAQ 250
Query: 42 HPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTV 101
+ Y ++G E + WE D +F+ L +D V+D++ + + P NT
Sbjct: 251 YFYRDEDGNEAERVWEEAVAED-----VFETLSQRD-TATVVDVNRRTRTDSPPAPFNTT 304
Query: 102 NLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG 161
++ A+SALGY + AM +AE LYT G+I+YPRT++T YP D L +P G
Sbjct: 305 QFIR-AASALGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPTLG 363
Query: 162 DYVERLLAEGYAKPRSG-TDAGDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
+ E LL +P G + DHPPI P + + D W ++ V + F TV+
Sbjct: 364 ESAESLLEADEIEPTEGDEETTDHPPIHPTGEIPSRGDVSDDEWEVFELVVRRFYATVA 422
>gi|342186042|emb|CCC95527.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 913
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 19/223 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L +GPCQ PTLGF V+R + F PE ++TL V R ++D AT
Sbjct: 200 VLSFGPCQIPTLGFVVRRSWERKGFVPEDYFTL----VLRHNNTTFNSLRGSMYDLIAAT 255
Query: 69 M-FQKLVMQDRIL---EVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ F+ ++ + R E++++ EK+E + R L TV L K+ +S L + M AE
Sbjct: 256 LVFETMLEEARETPEAEIVEVIEKREVRRRHVPLATVELQKLCASHLRITSEQCMMWAES 315
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSAL-ANNPVWGDYVERLLAE---GYAKPRSGTD 180
LY +G++SYPRTE+ ++ + + ++AL + NP +V+ +L + Y +P G
Sbjct: 316 LYQEGYLSYPRTETDSFTMTDEELLEIAALQSTNPEVSGFVDAMLRDPQNKYCRPLDGGH 375
Query: 181 AGD-HPPITPMRSATEDMLGKDAWR--LYSYVCQHFLGTVSPD 220
+ + HPPI P T+ + KD R LY+++ ++FL +SPD
Sbjct: 376 SDNAHPPIYP----TKPLHVKDDRRAPLYNFIVRYFLACISPD 414
>gi|440494418|gb|ELQ76798.1| DNA topoisomerase III alpha [Trachipleistophora hominis]
Length = 848
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 11/214 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R L+ F EKF+TL +V++ + W R +FD +
Sbjct: 188 VVSYGSCQIPTLGFVVERALEHKKFVAEKFFTLKICIVKDRHTNIFSWTRGNVFDKNCVL 247
Query: 69 MFQKLVMQDRILEVIDISEKQE-SKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
F + + + V+ EK+ ++ RP L TV++ K+ S ++ MQ+AE LY
Sbjct: 248 YFFRYLTDELAGTVVTGVEKKSVTRYRPLPLRTVDMQKILSRSM--PSHRIMQVAETLYQ 305
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPP 186
+G ISYPRTE+ +P +F++ + + + + PRSG + H P
Sbjct: 306 RGIISYPRTETDCFPRNFEYNRIKTEILKAGRHN-----VANTAFRGPRSGRNNDFAHLP 360
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
I P+++ L D ++Y+++ F+ +VS D
Sbjct: 361 IYPLKNPAN--LTADEKKVYNFIADRFIASVSED 392
>gi|435845938|ref|YP_007308188.1| DNA topoisomerase I [Natronococcus occultus SP4]
gi|433672206|gb|AGB36398.1| DNA topoisomerase I [Natronococcus occultus SP4]
Length = 842
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 102/226 (45%), Gaps = 20/226 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLF---DFDVATM 69
G Q+PTL V R +I +F PE +W L L Q + +E Q + D + A
Sbjct: 191 GRVQSPTLKLIVDREREIQAFDPETYWELFADLRQ----AETTFEAQYFYRDEDDNEAER 246
Query: 70 FQKLVMQDRILE---------VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
K D + E V+D++ + + P NT ++ A+SA+GY + AM
Sbjct: 247 VWKEARADEVYETLSGRNAATVVDVNRRTRTDAPPAPFNTTQFIR-AASAIGYSAKRAMS 305
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-T 179
+AE LYT G+I+YPRT++T YP D L + GD + LL + G
Sbjct: 306 IAEDLYTAGYITYPRTDNTVYPDDLDPEELLEEFVGHSTLGDAADSLLEADEIRATEGDE 365
Query: 180 DAGDHPPITPMRSATEDM--LGKDAWRLYSYVCQHFLGTVSPDCKY 223
+ DHPPI P + D W +Y V + F TV+ K+
Sbjct: 366 ETTDHPPIHPTGEIPTRGGDVSDDEWEIYELVVRRFYATVADPAKW 411
>gi|399575540|ref|ZP_10769298.1| DNA topoisomerase i [Halogranum salarium B-1]
gi|399239808|gb|EJN60734.1| DNA topoisomerase i [Halogranum salarium B-1]
Length = 843
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 26/234 (11%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG-------------------YELK 53
G Q PTL V R +I +F PE +W L L ++ Y +
Sbjct: 195 GRVQGPTLKLIVDREREIDAFDPEDYWELFADLEKSAESATDADEVDDESFESQYFYLDE 254
Query: 54 LEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGY 113
+ E ++++D + AT + + + V ++ + + P NT ++ A S +GY
Sbjct: 255 DDNEAERVWDEESATKAFETLQSESSATVTSVNRRTRTDEPPAPFNTTQFIRAAGS-IGY 313
Query: 114 GPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYA 173
Q AM +AE LYT G+I+YPRT++T YP D R L A + + D E LL +
Sbjct: 314 SAQRAMSIAEDLYTAGYITYPRTDNTHYPEDLDPRELLDAFTGSSTFSDDAESLLDQEEI 373
Query: 174 KPRSGT-DAGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+P +G + DHPPI P + SA++ L +D +Y V + F TV+ K+
Sbjct: 374 EPTTGDKETTDHPPIHPTGELPSASD--LSEDEHDVYELVVRRFFATVAEAAKW 425
>gi|56900852|gb|AAW31721.1| DNA topoisomerase III alpha [Trypanosoma cruzi]
Length = 921
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L +GPCQ PTLGF V+R+ + F E F+TL ++++G + R +FD AT
Sbjct: 200 VLSFGPCQIPTLGFVVRRHREREGFVQEDFFTL---VMRHGQTV-FHGCRGSVFDQLAAT 255
Query: 69 MFQKLVMQ----DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ + +++ + V+D+ + + P L TV L K+A++ L + M AE
Sbjct: 256 LVLETMLESAGPNAEALVVDVVRRPTRRHPPVPLATVALQKLAATHLHISSEQCMTWAES 315
Query: 125 LYTQGFISYPRTESTAYPSSFD-FRGTLSALANNPVWGDYVERLLAEGYAKPR----SGT 179
LY +GFISYPRTE+ ++ + D R +NP DYV +L + K R G
Sbjct: 316 LYQEGFISYPRTETDSFSFTDDELREIAGVQRDNPEVADYVGAMLDDSSHKFRRPLKGGH 375
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
D HPPI P + + A LY+ + +HFL +SPD
Sbjct: 376 DDKAHPPIYPTKLMRAKHDNRSA--LYNLIVRHFLACLSPD 414
>gi|341581825|ref|YP_004762317.1| DNA topoisomerase I [Thermococcus sp. 4557]
gi|340809483|gb|AEK72640.1| DNA topoisomerase I [Thermococcus sp. 4557]
Length = 719
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 5/210 (2%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G Q PTL F V R +I +FKP +W + L +NG + +E++++ D D A
Sbjct: 195 VLSTGRVQGPTLKFLVDREKEIQNFKPTPYWVIKMLLEKNGEQYTAVYEKERILDEDEAK 254
Query: 69 -MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ ++ +E +++ KQ+ + P + L + A SA GY P+ ++LA++LY
Sbjct: 255 RIVEEAKKGPAFVEKVEV--KQQKRNPPVPFDLGTLQREAYSAFGYSPKKTLELAQKLYE 312
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPP 186
+G SYPRT S P + +FR L LA P + + LL + KP G HP
Sbjct: 313 RGLTSYPRTSSQKLPKNLNFRPILQNLAKLPEYKPFAHELLGKERLKPVEGKKEDPAHPA 372
Query: 187 ITPMRSATE-DMLGKDAWRLYSYVCQHFLG 215
I P + L KD LY + + FL
Sbjct: 373 IYPTGELPKPGDLTKDEQNLYDLIVRRFLA 402
>gi|256827343|ref|YP_003151302.1| topoisomerase IA [Cryptobacterium curtum DSM 15641]
gi|256583486|gb|ACU94620.1| topoisomerase IA [Cryptobacterium curtum DSM 15641]
Length = 834
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 98/216 (45%), Gaps = 20/216 (9%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV---------QNGYELKLEWERQKLFD 63
G QTPTL V++ + +F PE +W + K+E E + D
Sbjct: 239 GRVQTPTLALIVEKERERLAFVPEDYWQIRGAFAVGDESFTAPHATARFKVEAEARSAMD 298
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
V V I +K P NT +L+ A++A G P M++AE
Sbjct: 299 ---------RVQNAHSATVSAIEKKTRRVAAPAPFNTTSLM-AAAAAEGIRPARCMRMAE 348
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDAG 182
LY GFISYPR ++T YP+S D + L NP + Y +LL++G R +
Sbjct: 349 SLYMDGFISYPRVDNTVYPASLDLAEVVHMLEGNPAYRPYCAQLLSQGPLHATRGKKEET 408
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P AT D L ++LY+ + + FL T+S
Sbjct: 409 DHPPIYPTNVATPDTLPAAEFKLYNLIARRFLATLS 444
>gi|448319986|ref|ZP_21509474.1| DNA topoisomerase I [Natronococcus amylolyticus DSM 10524]
gi|445606392|gb|ELY60296.1| DNA topoisomerase I [Natronococcus amylolyticus DSM 10524]
Length = 827
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 16/219 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q+PTL V R +I +F PE +W L L Q + ++ + D + ++ +
Sbjct: 191 GRVQSPTLKLIVDREREIQAFDPETYWELFADLRQAETTFEAQYFYRDEDDNEAERVWAE 250
Query: 73 LVMQDRILE---------VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
D + E V+D++ + + P NT ++ A+SA+GY + AM +AE
Sbjct: 251 -ARADEVYETLSGRDAATVVDVNRRTRTDAPPAPFNTTQFIR-AASAIGYSAKRAMSIAE 308
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
LYT G+I+YPRT++T YP D L + G+ + LL +P G +
Sbjct: 309 DLYTAGYITYPRTDNTVYPDDLDPEELLEEFVGHSTLGESADSLLEADEIRPTEGDEETT 368
Query: 183 DHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + S D + D W +Y V + F TV+
Sbjct: 369 DHPPIHPTGEIPSRGGD-VSDDEWEIYELVVRRFYATVA 406
>gi|429190846|ref|YP_007176524.1| topoisomerase IA [Natronobacterium gregoryi SP2]
gi|448327153|ref|ZP_21516488.1| DNA topoisomerase I [Natronobacterium gregoryi SP2]
gi|429135064|gb|AFZ72075.1| topoisomerase IA [Natronobacterium gregoryi SP2]
gi|445608936|gb|ELY62752.1| DNA topoisomerase I [Natronobacterium gregoryi SP2]
Length = 827
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 12/217 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F PE +W L L ++ + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDREREIQAFDPEDYWELFAALEKDETTFEAQYFYRDEDDNEAERVWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A + V+D++ + + P +T ++ A+ ALGY Q AM +AE
Sbjct: 251 VTAEEVYDTLSSRDAATVVDVNRRTRTDAPPAPFSTTQFIR-AAGALGYSAQRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTDAGD 183
LYT G+I+YPRT++T YP D L + G+ E LL +P R + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEELLDEFVGHSTLGESAEALLEGDDIEPTRGDEETTD 369
Query: 184 HPPITPMRS--ATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P A + D W +Y V + F TV+
Sbjct: 370 HPPIHPTGEIPARGGDVNDDEWEIYELVVRRFYATVA 406
>gi|302656146|ref|XP_003019829.1| hypothetical protein TRV_06117 [Trichophyton verrucosum HKI 0517]
gi|291183601|gb|EFE39205.1| hypothetical protein TRV_06117 [Trichophyton verrucosum HKI 0517]
Length = 622
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 13/224 (5%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A+ I+ YG CQ PTLGF V RY+++ +FKPE FW++ ++G + W+R LFD
Sbjct: 200 ALAEKIISYGSCQFPTLGFVVDRYMRVKNFKPEAFWSIKVSHTRDGITVNFNWQRGHLFD 259
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ + + +I V +++K SK RP L TV+L + S L Q M+
Sbjct: 260 RAAVVVLFERCLAAKIATVTKVNKKPTSKWRPLPLTTVDLQMMGSKYLRIDSQAIMKFDN 319
Query: 124 RLYTQGFIS--YPRTESTAYP--SSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
+ + + YP Y S F L+ NP G+ +PR G
Sbjct: 320 EIDLKKLVEKQYPSEAWGEYARGSVFSTNTILAEFHTNPS--------RCGGFKQPRRGR 371
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P+ + +L + ++Y +V + FL S D +
Sbjct: 372 NNDKAHPPIHPVAYVSPTVLNANEEKVYEFVTRRFLACCSEDAE 415
>gi|71654804|ref|XP_816014.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70881114|gb|EAN94163.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 921
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L +GPCQ PTLGF V+R+ + F E F+TL ++++G + R +FD AT
Sbjct: 200 VLSFGPCQIPTLGFVVRRHREREGFVQEDFFTL---VMRHGQTV-FHGCRGSVFDQLAAT 255
Query: 69 MFQKLVMQ----DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ + +++ + V+D+ + + P L TV L K+A++ L + M AE
Sbjct: 256 LVLETMLESAGPNAEALVVDVVRRPTRRHPPVPLATVALQKLAATHLHISSEQCMTWAES 315
Query: 125 LYTQGFISYPRTESTAYPSSFD-FRGTLSALANNPVWGDYVERLLAEGYAKPR----SGT 179
LY +GFISYPRTE+ ++ + D R +NP DYV +L + K R G
Sbjct: 316 LYQEGFISYPRTETDSFSFTDDELREIAGVQRDNPEVADYVGAMLDDSSNKFRRPLKGGH 375
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
D HPPI P + + A LY+ + +HFL +SPD
Sbjct: 376 DDKAHPPIYPTKLMPARHDNRSA--LYNLIVRHFLACLSPD 414
>gi|448319100|ref|ZP_21508606.1| DNA topoisomerase I [Natronococcus jeotgali DSM 18795]
gi|445596714|gb|ELY50798.1| DNA topoisomerase I [Natronococcus jeotgali DSM 18795]
Length = 842
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 72/237 (30%), Positives = 106/237 (44%), Gaps = 35/237 (14%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLE-------------WERQ 59
G Q+PTL V R +I +F PE +W L L ++ + E +E Q
Sbjct: 191 GRVQSPTLKLIVDREREIEAFDPETYWELFADLKKSEAQRASETSSGEQPRDDETTFEAQ 250
Query: 60 KLF---DFDVATMFQKLVMQDRILE---------VIDISEKQESKVRPCGLNTVNLLKVA 107
+ D + A + D + E V+D++ + + P NT ++ A
Sbjct: 251 YFYRDEDDNEAERVWEEAQADEVYETLSSRDAATVVDVNRRTRTDAPPAPFNTTQFIR-A 309
Query: 108 SSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERL 167
+SA+GY + AM +AE LYT G+I+YPRT++T YP D L A ++ GD + L
Sbjct: 310 ASAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLEAFVDHSELGDAADAL 369
Query: 168 LAEGYAKPRSG-TDAGDHPPI-----TPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
L +P G + DHPPI P R D D W LY V + F TV+
Sbjct: 370 LEADEIRPTEGDEETTDHPPIHPTGEIPTRGGDVD---DDEWELYELVVRRFYATVA 423
>gi|16554466|ref|NP_444190.1| DNA topoisomerase I [Halobacterium sp. NRC-1]
gi|169235326|ref|YP_001688526.1| DNA topoisomerase I [Halobacterium salinarum R1]
gi|167726392|emb|CAP13175.1| DNA topoisomerase I [Halobacterium salinarum R1]
Length = 829
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 104/218 (47%), Gaps = 15/218 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW---------ERQKLFD 63
G Q+PTL V + +I +F P+ +W L L ++ + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDKEREIEAFDPDDYWELFADLRKDQTTFEAQYFYEDPADGTEAERVWN 250
Query: 64 -FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D F L + V +S + + P NT ++ A S LGY AM +A
Sbjct: 251 EGDADAAFDALRQAGEAV-VDSVSRRTRTDDPPAPFNTTQFIRAAGS-LGYSAGRAMSIA 308
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DA 181
E LYT G+I+YPRT++T YP D R L A V+GD + LL + P SG +
Sbjct: 309 EDLYTAGYITYPRTDNTVYPDDLDERDLLEAFQQT-VFGDDADSLLDQDRLSPTSGDEET 367
Query: 182 GDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + L +D W +Y V + F TV+
Sbjct: 368 TDHPPIHPTTDFPDRNQLSEDEWAVYELVVRRFFATVA 405
>gi|71651605|ref|XP_814477.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70879452|gb|EAN92626.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 921
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 112/221 (50%), Gaps = 15/221 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L +GPCQ PTLGF V+R+ + F E F+TL ++++G + R +FD AT
Sbjct: 200 VLSFGPCQIPTLGFVVRRHREREGFVQEDFFTL---VMRHGQTV-FHGCRGSVFDQLAAT 255
Query: 69 MFQKLVMQ----DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ + +++ + V+D+ + + P L TV L K+A++ L + M AE
Sbjct: 256 LVLETMLESAGPNAEALVVDVVRRPTRRHPPVPLATVALQKLAATHLHISSEQCMTWAES 315
Query: 125 LYTQGFISYPRTESTAYPSSFD-FRGTLSALANNPVWGDYVERLLAEGYAKPR----SGT 179
LY +GFISYPRTE+ ++ + D R NP DYV +L + K R G
Sbjct: 316 LYQEGFISYPRTETDSFSFTDDELREIAGVQRENPEVADYVGAMLDDSSHKFRRPLKGGH 375
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
D HPPI P + + A LY+ + +HFL +SPD
Sbjct: 376 DDKAHPPIYPTKLMRAKHDNRSA--LYNLIVRHFLACLSPD 414
>gi|294892870|ref|XP_002774271.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
gi|239879497|gb|EER06087.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
Length = 956
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 81/144 (56%), Gaps = 6/144 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL YGPCQ PTLGF VQR+L +F E FWT+ + E+KL W R +LFD T
Sbjct: 433 ILSYGPCQFPTLGFVVQRWLLQRNFIREPFWTIKCTVSGPMVEVKLLWGRHRLFDHLATT 492
Query: 69 MFQKLVMQDRILE-----VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ +Q + E V +S +S+ RP L+TV K+ASS L + AM++AE
Sbjct: 493 LLYDRCLQ-HVRESGGGVVTHVSHNPKSRWRPLPLSTVEFAKLASSKLRIDSRQAMRIAE 551
Query: 124 RLYTQGFISYPRTESTAYPSSFDF 147
LY +G ISYPRTE+ + + D
Sbjct: 552 ELYNRGIISYPRTETDRFNPNIDL 575
>gi|10579972|gb|AAG18918.1| DNA topoisomerase I [Halobacterium sp. NRC-1]
Length = 663
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 104/218 (47%), Gaps = 15/218 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW---------ERQKLFD 63
G Q+PTL V + +I +F P+ +W L L ++ + ++ E +++++
Sbjct: 25 GRVQSPTLKLIVDKEREIEAFDPDDYWELFADLRKDQTTFEAQYFYEDPADGTEAERVWN 84
Query: 64 -FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D F L + V +S + + P NT ++ A S LGY AM +A
Sbjct: 85 EGDADAAFDALRQAGEAV-VDSVSRRTRTDDPPAPFNTTQFIRAAGS-LGYSAGRAMSIA 142
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DA 181
E LYT G+I+YPRT++T YP D R L A V+GD + LL + P SG +
Sbjct: 143 EDLYTAGYITYPRTDNTVYPDDLDERDLLEAFQQT-VFGDDADSLLDQDRLSPTSGDEET 201
Query: 182 GDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + L +D W +Y V + F TV+
Sbjct: 202 TDHPPIHPTTDFPDRNQLSEDEWAVYELVVRRFFATVA 239
>gi|448306300|ref|ZP_21496208.1| DNA topoisomerase I [Natronorubrum bangense JCM 10635]
gi|445598359|gb|ELY52418.1| DNA topoisomerase I [Natronorubrum bangense JCM 10635]
Length = 828
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 13/218 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL----------VQNGYELKLEWERQKLF 62
G Q+PTL V R +I +F PE +W L L Q Y + + E ++++
Sbjct: 191 GRVQSPTLKLIVDREREIEAFDPESYWELFADLEKDDDTDAFEAQYFYRDEDDNEAERVW 250
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
+ VA + V+D++ + + P NT ++ ASS +GY + AM +A
Sbjct: 251 EEAVADEVYDTLSSHDSATVVDVTRRTRTDTPPTPFNTTQFIRAASS-IGYTAKRAMSIA 309
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDA 181
E LYT G+++YPRT++T YP + L + G+ E LL P G +
Sbjct: 310 EELYTAGYVTYPRTDNTVYPDDLEPEELLDDFVGHSTLGESAESLLEADEIVPTEGDEET 369
Query: 182 GDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P T + D W ++ V + F TV+
Sbjct: 370 TDHPPIHPTGEIPTRGDVSDDEWEIFELVVRRFFATVA 407
>gi|300120095|emb|CBK19649.2| unnamed protein product [Blastocystis hominis]
Length = 770
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 21/189 (11%)
Query: 52 LKLEWERQKLFD-FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSA 110
+KL+W R LFD VAT+F L+ ++ V+ ++E+++SK +P LNTV L K +
Sbjct: 258 VKLKWARNHLFDKLVVATLFS-LIANEKKGVVLQMNERKKSKFKPLPLNTVELQKRVARH 316
Query: 111 LGYGPQMAMQLAERLYTQGFI----------SYPRTESTAYPSSFDFRGTLSALANNPVW 160
L + M++ E LY +GFI SYPRTE+ + + DF+ + + W
Sbjct: 317 LKISSEETMKICEALYQKGFIRYEPNPPLIGSYPRTETAVFAAGTDFQSLIQVQSGASDW 376
Query: 161 GDYVERLLAEGYAKPRSGT-DAGDHPPITPMR-----SATEDMLGKDAWR---LYSYVCQ 211
G Y ++LL +A PR+G D HPPI P + +A G DA R +Y Y+ +
Sbjct: 377 GTYAQKLLGGDFAPPRAGKGDDHAHPPIHPTKLLERVNAGSIGGGFDASRVFAIYEYITR 436
Query: 212 HFLGTVSPD 220
HFL + S D
Sbjct: 437 HFLASCSRD 445
>gi|147797586|emb|CAN71431.1| hypothetical protein VITISV_040319 [Vitis vinifera]
Length = 1769
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 52/66 (78%), Gaps = 2/66 (3%)
Query: 161 GDYV--ERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
GD + E + G+ +PRSGTDAGDHPPI PMR+ EDML DAW+LY YVCQHF+GTVS
Sbjct: 543 GDNICFEVVECTGFHRPRSGTDAGDHPPIIPMRAVNEDMLVNDAWKLYQYVCQHFIGTVS 602
Query: 219 PDCKYI 224
PDCKY+
Sbjct: 603 PDCKYL 608
>gi|257389049|ref|YP_003178822.1| DNA topoisomerase I [Halomicrobium mukohataei DSM 12286]
gi|257171356|gb|ACV49115.1| DNA topoisomerase I [Halomicrobium mukohataei DSM 12286]
Length = 863
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 12/221 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F PE +W + L + + ++ E ++++D
Sbjct: 190 GRVQSPTLKLIVDREREIQAFDPEDYWEIFGDLQGDDAAFEAQYFYDDDGSEAERVWDEA 249
Query: 66 VA-TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A ++++ L D V + E+ + P NT + A S LGY Q AM LAE
Sbjct: 250 TAESVYEDLAALDAA-TVTSVRERTRTDAPPEPFNTTAFISAAGS-LGYSAQRAMSLAEE 307
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+++YPRT++T YP + L + +G+ E LL + P G + D
Sbjct: 308 LYTAGYMTYPRTDNTVYPEDLEPDELLDEFVGSSTFGEDAESLLEQDEIVPTEGDEETTD 367
Query: 184 HPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
HPPI P L D W +Y V + F TV+ K+
Sbjct: 368 HPPIHPTGELPPRGELDDDEWEIYELVVRRFFATVAEPAKW 408
>gi|449664547|ref|XP_002159450.2| PREDICTED: DNA topoisomerase 3-alpha-like [Hydra magnipapillata]
Length = 772
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 3/153 (1%)
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M K V+ + V ++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 1 MANKEVLSNPRATVTNMISKPKSKWRPVALDTVELEKLASRKLKINAKETMKIAEKLYTQ 60
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G ISYPRTE+ +P + + +P WG + +LA PR G + HPPI
Sbjct: 61 GIISYPRTETNIFPKGLNLTPLVENQTVDPQWGGFASNILANNGPNPRQGKKTDNAHPPI 120
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
P++ D L + R+Y ++ +HFL VS D
Sbjct: 121 HPIKYI--DSLQGNEKRIYEFIVRHFLACVSKD 151
>gi|433638091|ref|YP_007283851.1| topoisomerase IA [Halovivax ruber XH-70]
gi|433289895|gb|AGB15718.1| topoisomerase IA [Halovivax ruber XH-70]
Length = 854
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 15/225 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG-----------YELKLEWERQKL 61
G Q+PTL V R +I +F P+ +W L L ++ Y + + E +++
Sbjct: 213 GRVQSPTLKLLVDREREIEAFDPDDYWELFAELAKDEDEGDAFEAQYFYRDEDDNEAERV 272
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+D +A + + V+D++ + + P NT ++ A+SA+GY + AM +
Sbjct: 273 WDESIAESVFETLSSASEATVVDVNRRTRTDTPPAPFNTTQFIR-AASAIGYSAKRAMSI 331
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA--EGYAKPRSGT 179
AE LYT G+++YPRT++T YP D L +P G+ E LL +
Sbjct: 332 AEDLYTAGYMTYPRTDNTVYPDDLDPEALLDDFVGHPTLGESAEDLLETDDDLVATEGDE 391
Query: 180 DAGDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+ DHPPI P + D W ++ V + F T++ ++
Sbjct: 392 ETTDHPPIHPTGEIPARGEVSDDEWEIFELVVRRFYATLADAARW 436
>gi|448434802|ref|ZP_21586500.1| DNA topoisomerase I [Halorubrum tebenquichense DSM 14210]
gi|445684425|gb|ELZ36801.1| DNA topoisomerase I [Halorubrum tebenquichense DSM 14210]
Length = 879
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 18/221 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L L ++G +E + + ER++++D
Sbjct: 195 GRVQGPTLKLIVDREREIQAFDPESYWELTGELAKSGGDPFEARYFYLNDEGNERERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
VA + + V D++ + ++ P NT ++ A S +G+ Q AM LAE
Sbjct: 255 EGVAETLTEALDAADGATVDDVTRRTQTDDPPTPFNTTAFIRAAGS-IGHSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSG-TD 180
LYT G+++YPRT++T YP + ++ LA + +G L+ + +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPDDLEPEELIADLAESSTFGTDAASLIDDDDREIEPTEGDEE 373
Query: 181 AGDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + SA++ L D W +Y + + FL T +
Sbjct: 374 TTDHPPIHPTGELPSASD--LSDDEWEVYELIVRRFLATCA 412
>gi|448374321|ref|ZP_21558206.1| DNA topoisomerase I [Halovivax asiaticus JCM 14624]
gi|445660998|gb|ELZ13793.1| DNA topoisomerase I [Halovivax asiaticus JCM 14624]
Length = 832
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG-----------YELKLEWERQKL 61
G Q+PTL V R +I +F P+ +W L L+++ Y + + E +++
Sbjct: 191 GRVQSPTLKLLVDREREIEAFDPDDYWELFADLIKDDGDGDAFEAQYFYRDEDDNEAERV 250
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
++ VA + + V+D++ + + P NT ++ A+SA+GY + AM +
Sbjct: 251 WEESVAESVFETLSSASEATVVDVNRRTRTDTPPAPFNTTQFIR-AASAIGYSAKRAMSI 309
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLA--EGYAKPRSGT 179
AE LYT G+++YPRT++T YP D L +P G+ E LL +
Sbjct: 310 AEDLYTAGYMTYPRTDNTVYPDDLDPEALLDDFVGHPTLGESAEDLLETDDDLVATEGDE 369
Query: 180 DAGDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+ DHPPI P + D W ++ V + F T++ ++
Sbjct: 370 ETTDHPPIHPTGEIPARGEVSDDEWEIFELVVRRFYATLADAARW 414
>gi|312381313|gb|EFR27087.1| hypothetical protein AND_06414 [Anopheles darlingi]
Length = 1456
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 82 VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAY 141
V++++EK ++K RP ++TV L K+ S L + M +AE+LYTQG ISYPRTE+ +
Sbjct: 734 VVNVTEKPKNKWRPTPMDTVELEKLGSRKLKMNAKHVMTIAEKLYTQGIISYPRTETNMF 793
Query: 142 PSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPITPMRSATEDMLGK 200
S + + A N WG + E++L G PR+G + HPPI P + T L
Sbjct: 794 TSDMNLVPLVQAQVANQQWGSFAEKVLEWG-VNPRNGKKSDQAHPPIHPTKLPTN--LSG 850
Query: 201 DAWRLYSYVCQHFLGTVSPD 220
D WR+Y + +HFL VS D
Sbjct: 851 DEWRVYELIARHFLACVSRD 870
>gi|124485959|ref|YP_001030575.1| hypothetical protein Mlab_1139 [Methanocorpusculum labreanum Z]
gi|124363500|gb|ABN07308.1| DNA topoisomerase, type IA, central domain protein
[Methanocorpusculum labreanum Z]
Length = 935
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 8/218 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL G Q+PTL V R +I +F P K+W L ++G ++ + D A
Sbjct: 190 ILSVGRVQSPTLAMIVDREREIEAFVPTKYWMLSLATEKSGIGVEARHVHGRFTDSAEAK 249
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
++ L V D+ + P L+T L+ V +S LG AM AE LY +
Sbjct: 250 AAYDATVEP--LRVTDVITGHKVDRAPTPLDTTALI-VGASRLGISASYAMNRAEDLYMR 306
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGD--YVERLLAEGYAKPRSGTDAGDHPP 186
GFISYPRT++TAYP S L+ A+ + YV+ L R + DHPP
Sbjct: 307 GFISYPRTDNTAYPKSLKISEQLAIFAHGAFSKEAGYVKDHLRS--VPTRGKKETTDHPP 364
Query: 187 ITPMRSATEDMLGKD-AWRLYSYVCQHFLGTVSPDCKY 223
I P A + +G D +W+LY ++ + F T+ D ++
Sbjct: 365 IYPTSLANREEIGDDVSWKLYEFIVRRFFATICIDAEW 402
>gi|448450586|ref|ZP_21592405.1| DNA topoisomerase I [Halorubrum litoreum JCM 13561]
gi|445811700|gb|EMA61703.1| DNA topoisomerase I [Halorubrum litoreum JCM 13561]
Length = 865
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L L ++G +E + + ER++++D
Sbjct: 195 GRVQGPTLKLIVDREREIQAFDPESYWELTGELAKSGGDPFEARYFYLNDEGNERERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
DVA + + + V D+ + ++ P NT ++ A S LGY Q AM LAE
Sbjct: 255 GDVAAVLTEALAAADAATVDDVDRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG-DYVERLLAEGYAKPRSG-TDA 181
LYT G+++YPRT++T YP + + L+ +G D L + +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPEDLEPAELIEELSAASTFGTDAASLLDGDDEIEPTEGDEET 373
Query: 182 GDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + SA++ L D W +Y + + FL T +
Sbjct: 374 TDHPPIHPTGELPSASD--LSDDEWEVYELIVRRFLATCA 411
>gi|448510389|ref|ZP_21615890.1| DNA topoisomerase I [Halorubrum distributum JCM 9100]
gi|448522099|ref|ZP_21618364.1| DNA topoisomerase I [Halorubrum distributum JCM 10118]
gi|445695956|gb|ELZ48052.1| DNA topoisomerase I [Halorubrum distributum JCM 9100]
gi|445702373|gb|ELZ54327.1| DNA topoisomerase I [Halorubrum distributum JCM 10118]
Length = 865
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L L ++G +E + + ER++++D
Sbjct: 195 GRVQGPTLKLIVDREREIQAFDPESYWELTGELAKSGGDPFEARYFYLNDEGNERERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
DVA + + + V D+ + ++ P NT ++ A S LGY Q AM LAE
Sbjct: 255 GDVAEVLTEALAAADAATVDDVDRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG-DYVERLLAEGYAKPRSG-TDA 181
LYT G+++YPRT++T YP + + L+ +G D L + +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPEDLEPAELIEELSAASTFGTDAASLLDGDDEIEPTEGDEET 373
Query: 182 GDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + SA++ L D W +Y + + FL T +
Sbjct: 374 TDHPPIHPTGELPSASD--LSDDEWEVYELIVRRFLATCA 411
>gi|448685228|ref|ZP_21693220.1| DNA topoisomerase I [Haloarcula japonica DSM 6131]
gi|445781839|gb|EMA32690.1| DNA topoisomerase I [Haloarcula japonica DSM 6131]
Length = 827
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 12/216 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLF-DF 64
G Q+PTL V R +I +F PE +W + L +NG + ++ E ++++ +
Sbjct: 190 GRVQSPTLKLIVDREREIQAFDPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVED 249
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
D + L D V + + + P NT + ASS LGY Q AM +AE
Sbjct: 250 DADEAYADLTSVDAA-TVTSVRRRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEE 307
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP + L +G+ E+LL + G + D
Sbjct: 308 LYTTGYITYPRTDNTVYPDDLEEDALLDEFVGAGHFGEDAEKLLEQDDITATEGDEETTD 367
Query: 184 HPPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVS 218
HPPI P L D W +Y V + F TV+
Sbjct: 368 HPPIHPTGEIPPKADLSDDEWEIYELVVRRFFATVA 403
>gi|48477819|ref|YP_023525.1| DNA topoisomerase I [Picrophilus torridus DSM 9790]
gi|48430467|gb|AAT43332.1| DNA topoisomerase I [Picrophilus torridus DSM 9790]
Length = 753
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 68/213 (31%), Positives = 107/213 (50%), Gaps = 21/213 (9%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTLG +R ++I SF PEK+ Y++K+ + + + FD +
Sbjct: 192 GRVQTPTLGLIYKREMEIRSFVPEKY-----------YKIKITFNKNRDFDAYYNNELKD 240
Query: 73 LVMQDRIL-EVIDIS------EKQESKV-RPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
++I EV ++ +K+E + RP NT L+ AS LG P AM +AE+
Sbjct: 241 RKTAEKIFSEVKNMPGRVKSFDKEEYYIYRPAPFNTNEFLREASY-LGISPARAMNIAEK 299
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDH 184
LY QG ISYPRT++T Y S + + + L + + L E R T+A DH
Sbjct: 300 LYMQGLISYPRTDNTVYNKSINLKSIVEKLKKSEFSMEADLVLSQEKILPSRGKTEATDH 359
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTV 217
PPI P+ ++++ G D ++Y + + FL T+
Sbjct: 360 PPIYPVSVPSKELTG-DYKKIYELIVRRFLATL 391
>gi|14521628|ref|NP_127104.1| DNA topoisomerase I [Pyrococcus abyssi GE5]
gi|14423980|sp|Q9UYS8.1|TOP1_PYRAB RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|5458847|emb|CAB50334.1| topA DNA topoisomerase I [Pyrococcus abyssi GE5]
gi|380742240|tpe|CCE70874.1| TPA: DNA topoisomerase I [Pyrococcus abyssi GE5]
Length = 685
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 3/210 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
++L G Q PTL F V+R +I SF P+ +W + + +NG +L +E+ K++ + A
Sbjct: 193 VVLSTGRVQGPTLKFLVEREREIQSFVPKPYWVIKLVIEKNGQKLVANYEKDKIWSEEEA 252
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
V + + V +I K++ + P + L + A SA G+ P+ + +A+ LY
Sbjct: 253 KKIVTEVKKSK-ARVSNIEVKRQKRNPPVPFDLGTLQREAYSAFGFSPKKTLDIAQSLYE 311
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPP 186
+GF SYPRTES P + +FR + ++ P + Y LL KP G HP
Sbjct: 312 KGFTSYPRTESQKLPKNLNFRLIIQNISRMPQYRPYAHLLLGMPELKPVEGKKEDPAHPA 371
Query: 187 ITPMRSA-TEDMLGKDAWRLYSYVCQHFLG 215
I P L KD +LY + + FL
Sbjct: 372 IYPTGEIPGPGDLSKDEEKLYDMIVRRFLA 401
>gi|448424865|ref|ZP_21582643.1| DNA topoisomerase I [Halorubrum terrestre JCM 10247]
gi|445681711|gb|ELZ34140.1| DNA topoisomerase I [Halorubrum terrestre JCM 10247]
Length = 865
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L L ++G +E + + ER++++D
Sbjct: 195 GRVQGPTLKLIVDREREIQAFDPESYWELTGELAKSGGDPFEARYFYLNDEGNERERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
DVA + + + V D+ + ++ P NT ++ A S LGY Q AM LAE
Sbjct: 255 GDVAEVLTEALAAADAATVDDVDRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG-DYVERLLAEGYAKPRSG-TDA 181
LYT G+++YPRT++T YP + + L+ +G D L + +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPEDLEPAELIEELSAASTFGTDAASLLDGDDEIEPTEGDEET 373
Query: 182 GDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P + SA++ L D W +Y + + FL T +
Sbjct: 374 TDHPPIHPTGELPSASD--LSDDEWEVYELIVRRFLATCA 411
>gi|406701616|gb|EKD04732.1| hypothetical protein A1Q2_00962 [Trichosporon asahii var. asahii
CBS 8904]
Length = 1818
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 102/220 (46%), Gaps = 41/220 (18%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG-----YELKLEWERQKLFD 63
++ YGPCQ PTLGF V +Y ++ SF PE+FW + ++ ++++ +W R LFD
Sbjct: 182 LVSYGPCQFPTLGFVVDQYNRVQSFVPEQFWYISVTCERDSDDGETFKVEFKWRRNHLFD 241
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
DVA + +P L TV+L + S LG P+
Sbjct: 242 LDVAVLLSDF-------------------RKPLPLTTVDLQQSGSRLLGMTPK------- 275
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAG 182
R+ +GF+SYPRTE+ Y +FDF + N LL + PR+G +
Sbjct: 276 RILDKGFLSYPRTETDQYDKAFDFMALIRKQELN-------RELLDGAFQTPRNGRKNDK 328
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HPPI P A L + ++Y +V + FL + S + +
Sbjct: 329 AHPPIHPTNGA--QGLEGEERKVYEFVTRRFLASCSKNAE 366
>gi|315230416|ref|YP_004070852.1| DNA topoisomerase I [Thermococcus barophilus MP]
gi|315183444|gb|ADT83629.1| DNA topoisomerase I [Thermococcus barophilus MP]
Length = 719
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 5/214 (2%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+IL G Q PTL F V+R +I +FKP +W + L +NG + +E++++ D + A
Sbjct: 194 MILSTGRVQGPTLKFLVEREKEIANFKPTPYWVIKMTLEKNGKQYTATYEKERILDEEEA 253
Query: 68 T-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ Q+ +E +++ +++ + P L T L + A SA GY P+ + +A+RLY
Sbjct: 254 KRIVQEAKKGPAFVEKVEVKQQKRNPPHPFDLGT--LQREAYSAFGYSPKKTLDIAQRLY 311
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHP 185
G SYPRT S P + +++ + +LA P + + LL + KP G D HP
Sbjct: 312 EMGICSYPRTSSQKLPKNLNYKYIIQSLAKIPEYKPFAHELLGKPQLKPVEGQKDDPAHP 371
Query: 186 PITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVS 218
I P + L ++ +Y + + FL +
Sbjct: 372 AIYPTGELPKPGELTQEEKNIYDLIVRRFLAAFA 405
>gi|148706738|gb|EDL38685.1| topoisomerase (DNA) III alpha [Mus musculus]
Length = 698
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 3/147 (2%)
Query: 77 DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRT 136
D + V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQG+ISYPRT
Sbjct: 1 DPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRT 60
Query: 137 ESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPITPMRSATE 195
E+ +P + + +P WG + + +L G PR+G+ + HPPI P + T
Sbjct: 61 ETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRNGSKSDQAHPPIHPTK-YTS 119
Query: 196 DMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ G D RLY ++ +HFL S D +
Sbjct: 120 GLQGDDR-RLYEFIVRHFLACCSQDAQ 145
>gi|432328623|ref|YP_007246767.1| DNA topoisomerase I, archaeal [Aciduliprofundum sp. MAR08-339]
gi|432135332|gb|AGB04601.1| DNA topoisomerase I, archaeal [Aciduliprofundum sp. MAR08-339]
Length = 747
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 21/222 (9%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL----HPYLVQNGYELKLE-WERQKLFDF 64
L G Q+PTL V+R +I SF+P +W + H + G + W+ +
Sbjct: 190 LSVGRVQSPTLALIVKREREIESFEPTPYWNIGAKFHKRRIFRGEHIANPIWKEE----- 244
Query: 65 DVATMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
+ +++K+ ++LE ++ ++K P NT L A+ LG+ AM++A
Sbjct: 245 EAKKIYEKIKDCNVGKVLEYVEGTKKIRP---PSPFNTTEFLSEATK-LGFSAARAMRIA 300
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDA 181
E LY G+ISYPRT++T YP S + L +L + D V++L E P G ++
Sbjct: 301 EDLYMGGYISYPRTDNTVYPRSLNINAILKSLEKSKFSED-VKKLQKERRKYPTRGKKES 359
Query: 182 GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
DHPPI PMR A D + ++Y + + F T++PD +Y
Sbjct: 360 KDHPPIVPMRGAKLD---GERGKIYELIVRRFFATLAPDMEY 398
>gi|448492196|ref|ZP_21608790.1| DNA topoisomerase I [Halorubrum californiensis DSM 19288]
gi|445691655|gb|ELZ43839.1| DNA topoisomerase I [Halorubrum californiensis DSM 19288]
Length = 865
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 69/220 (31%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE FW L L ++G +E + + ER++++D
Sbjct: 195 GRVQGPTLKLIVDREREIQAFDPESFWELTGELAKSGGDPFEARYFYLNDEGNERERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
VA + V D++ + ++ P NT ++ A S LGY Q AM LAE
Sbjct: 255 EAVAETLADALDAADGATVDDVTRRTQTDDPPTPFNTTAFIRAAGS-LGYSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSG-TDA 181
LYT G+++YPRT++T YP + + L+ +G LL + +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPEDLEPEELIEELSAASTFGKDAASLLDGDRDIEPTEGDEET 373
Query: 182 GDHPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPP+ P + SA + L D W +Y + + FL T +
Sbjct: 374 TDHPPVHPTGELPSAAD--LSDDEWEVYELIVRRFLATCA 411
>gi|448310602|ref|ZP_21500418.1| DNA topoisomerase I [Natronolimnobius innermongolicus JCM 12255]
gi|445607749|gb|ELY61625.1| DNA topoisomerase I [Natronolimnobius innermongolicus JCM 12255]
Length = 827
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 14/218 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F PE +W L L ++ + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDREREIQAFDPETYWELFADLTKDETTFEAQYFYRDEDDNEAERVWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
AT + + V+D++ + + P NT ++ A+ A+GY + AM +AE
Sbjct: 251 AAATEVYETLDDSDAATVVDVNRRTRTDTPPTPFNTTQFIR-AAGAIGYSAKRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL-AEGYAKPRSGTDAGD 183
LYT G+I+YPRT++T Y D L +P G+ E LL A+ + D
Sbjct: 310 LYTAGYITYPRTDNTVYSDDLDLEELLDDFVGHPTLGESAESLLEADEIVATEGDEETTD 369
Query: 184 HPPITP---MRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + S D + D W +Y V + F TV+
Sbjct: 370 HPPIHPTGEIPSRGGD-VSDDEWEVYELVVRRFYATVA 406
>gi|448305271|ref|ZP_21495203.1| DNA topoisomerase I [Natronorubrum sulfidifaciens JCM 14089]
gi|445589118|gb|ELY43354.1| DNA topoisomerase I [Natronorubrum sulfidifaciens JCM 14089]
Length = 828
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 107/219 (48%), Gaps = 15/219 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG----------YELKLEWERQKLF 62
G Q+PTL V R +I +F PE +W L L ++ Y + + E ++++
Sbjct: 191 GRVQSPTLKLIVDREREIEAFDPESYWELFADLEKDDDTDAFEAQYFYRDEDDNEAERVW 250
Query: 63 DFDVAT-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+ VA +++ L +D V+D++ + + P NT ++ A+SA+GY + AM +
Sbjct: 251 EEAVADEVYETLSSRDSAT-VVDVTRRTRTDTPPTPFNTTQFIR-AASAIGYTAKRAMSI 308
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-D 180
AE LYT G+I+YPRT++T YP D L + G+ E LL P G +
Sbjct: 309 AEELYTAGYITYPRTDNTVYPDDLDPEDLLDDFVGHSTLGESAESLLEADEISPTEGDEE 368
Query: 181 AGDHPPITPMRSA-TEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P T + D W ++ V + F TV+
Sbjct: 369 TTDHPPIHPTGEIPTRGDVSDDEWEIFELVVRRFFATVA 407
>gi|330506959|ref|YP_004383387.1| DNA topoisomerase I [Methanosaeta concilii GP6]
gi|328927767|gb|AEB67569.1| DNA topoisomerase I [Methanosaeta concilii GP6]
Length = 766
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 13/215 (6%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+PTL V R +I SF P+ +W ++ L ++ L+++ R ++++ D
Sbjct: 188 LSVGRVQSPTLALIVDREKEIQSFVPKPYWEIYADLERD---LRVQHARGRIWEKDEVDS 244
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ I+ I + E P +T + + A+S +G+ AM++AE LY G
Sbjct: 245 IVARLGPVGIIRSIQTKPRVEKP--PAPFDTTSFIS-AASGIGFSAANAMRIAEWLYVNG 301
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDY---VERLLAEGYAKPRSGTDAGDHPP 186
FISYPRT++T YP S D L AL + G++ E+LL R DHPP
Sbjct: 302 FISYPRTDNTVYPPSID----LVALTRLFLKGEFSKEAEKLLGGKMVPTRGKRSTTDHPP 357
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
I P + L ++ W++Y V + F T++ C
Sbjct: 358 IYPTAPVNKSELKEEQWKIYELVVRRFFATLAESC 392
>gi|327400378|ref|YP_004341217.1| DNA topoisomerase I [Archaeoglobus veneficus SNP6]
gi|327315886|gb|AEA46502.1| DNA topoisomerase I [Archaeoglobus veneficus SNP6]
Length = 667
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 8/213 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+PTL V+R +I +F+P +W + NG E ++ D A
Sbjct: 190 LSVGRVQSPTLRLIVEREKEIENFRPTPYWEIVAEFC-NG-ECFTAKHVERFTDVAKAKA 247
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
K + + + E++E+ RP NT L+ AS + P AM +AE LY G
Sbjct: 248 AFKKIGNTAAVRTFEKKERKEA--RPTPFNTTEFLREASKFMS--PDRAMNVAETLYMNG 303
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPIT 188
+ISYPRT++T YP + + + ++ N+ + + +L++ KP G ++ DHPPI
Sbjct: 304 YISYPRTDNTIYPPTLNLKAIATSFLNSDFEKE-AKIVLSQPSIKPSRGKKESKDHPPIY 362
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P A + L K+ W +Y V + FL T++P+
Sbjct: 363 PTAVAKKGELSKEEWTIYELVVRRFLATLAPEA 395
>gi|448671391|ref|ZP_21687330.1| DNA topoisomerase I [Haloarcula amylolytica JCM 13557]
gi|445765994|gb|EMA17131.1| DNA topoisomerase I [Haloarcula amylolytica JCM 13557]
Length = 838
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 10/215 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F PE +W + L +NG + ++ E ++++ D
Sbjct: 190 GRVQSPTLKLIVDREREIQAFDPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVED 249
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + V + + + P NT + ASS LGY Q AM +AE L
Sbjct: 250 DADDAYADLTGVDAATVTSVRRRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEEL 308
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
YT G+I+YPRT++T YP + L +G+ E+LL + G + DH
Sbjct: 309 YTTGYITYPRTDNTVYPDDLEEDALLDEFVGAGHFGEDAEKLLEQDDITATEGDEETTDH 368
Query: 185 PPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVS 218
PPI P + L D W +Y V + F TV+
Sbjct: 369 PPIHPTGEIPPKVDLSDDEWEIYELVVRRFFATVA 403
>gi|448344818|ref|ZP_21533720.1| DNA topoisomerase I [Natrinema altunense JCM 12890]
gi|445636924|gb|ELY90081.1| DNA topoisomerase I [Natrinema altunense JCM 12890]
Length = 1378
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 11/216 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F+PE++W L L ++ + ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDREREIQAFEPEEYWELFADLRKDETSFEAQYFYRDEDDNEAERVWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
VA + + D + V+D++ + + P NT ++ A+SA+GY + AM +AE
Sbjct: 251 SVADEVYETLADDDVATVVDVTRRTRTDTPPEPFNTTQFIR-AASAIGYSAKRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP D L N+P G+ E LL P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEDLLDEFVNHPSLGESAESLLEADEITPTEGDEETTD 369
Query: 184 HPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P + + D W +Y V + F TV+
Sbjct: 370 HPPIHPTGEIPSRGDISDDEWEVYELVVRRFYATVA 405
>gi|390960560|ref|YP_006424394.1| DNA topoisomerase, type IA [Thermococcus sp. CL1]
gi|390518868|gb|AFL94600.1| DNA topoisomerase, type IA [Thermococcus sp. CL1]
Length = 716
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 9/212 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G Q PTL F V+R +I +F+P+ +W + L +N +ER K++D + A
Sbjct: 195 VLSTGRVQGPTLKFLVEREREIANFQPKPYWVIKMTLEKNSKSYTATYERDKIWDEEEAK 254
Query: 69 -MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ Q+ +E +++ KQ+ + P + L + A SA GY P+ +++A++LY
Sbjct: 255 RIVQEAKKGPAFVERVEV--KQQKRNPPVPFDLGTLQREAYSAFGYSPKKTLEIAQKLYE 312
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPP 186
+ SYPRT S P + +FR L LA P + + LL + +P G HP
Sbjct: 313 RALCSYPRTSSQKLPKNLNFRSILQNLAKLPEYKPFAHELLGKDKLRPVEGKKEDPAHPA 372
Query: 187 ITP---MRSATEDMLGKDAWRLYSYVCQHFLG 215
I P + A E L +D LY + + FL
Sbjct: 373 IYPTGELPKAGE--LTRDEANLYDLIVRRFLA 402
>gi|14590513|ref|NP_142581.1| DNA topoisomerase I [Pyrococcus horikoshii OT3]
gi|14423960|sp|O58356.1|TOP1_PYRHO RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|3257028|dbj|BAA29711.1| 686aa long hypothetical DNA topoisomerase I [Pyrococcus horikoshii
OT3]
Length = 686
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 3/210 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
++L G Q PTL F V+R +I SF P +W + +NG + +E+ K+++ +
Sbjct: 193 VVLSTGRVQGPTLKFLVEREREIQSFVPRPYWVIKLIFEKNGQKFTANYEKDKIWEEEEG 252
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
L ++ I V ++ K++ + P + L + A SA G+ P+ + +A+ LY
Sbjct: 253 KRIV-LEVKKSIPRVSNVEIKRQKRTPPHPFDLGTLQREAYSAFGFSPKKTLDIAQSLYE 311
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPP 186
+GF SYPRTES P + +FR + LA P + Y LL KP G + HP
Sbjct: 312 KGFSSYPRTESQKLPRNINFRMIIQNLAKMPQYRPYAHILLGLPELKPVEGKKEDPAHPA 371
Query: 187 ITPMRSATEDM-LGKDAWRLYSYVCQHFLG 215
I P L KD +LY + + FL
Sbjct: 372 IYPTGEIPRPGDLTKDEEKLYDMIVRRFLA 401
>gi|448637090|ref|ZP_21675466.1| DNA topoisomerase I [Haloarcula sinaiiensis ATCC 33800]
gi|445764637|gb|EMA15781.1| DNA topoisomerase I [Haloarcula sinaiiensis ATCC 33800]
Length = 1364
Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats.
Identities = 65/215 (30%), Positives = 96/215 (44%), Gaps = 10/215 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F PE +W + L +NG + ++ E ++++ D
Sbjct: 190 GRVQSPTLKLIVDREREIQAFDPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVED 249
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + V + + + P NT + ASS LGY Q AM +AE L
Sbjct: 250 DADDAYADLTNVDAATVTSVRRRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEEL 308
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
YT G+I+YPRT++T YP + L +G+ E LL + G + DH
Sbjct: 309 YTTGYITYPRTDNTVYPDDLEEDALLDEFVGAGHFGEDAEALLEQDDITATEGDEETTDH 368
Query: 185 PPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVS 218
PPI P L D W +Y V + F TV+
Sbjct: 369 PPIHPTGEIPPKADLSDDEWEIYELVVRRFFATVA 403
>gi|55378414|ref|YP_136265.1| DNA topoisomerase I [Haloarcula marismortui ATCC 43049]
gi|55231139|gb|AAV46558.1| DNA topoisomerase I [Haloarcula marismortui ATCC 43049]
Length = 1364
Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats.
Identities = 65/215 (30%), Positives = 96/215 (44%), Gaps = 10/215 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F PE +W + L +NG + ++ E ++++ D
Sbjct: 190 GRVQSPTLKLIVDREREIQAFDPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVED 249
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + V + + + P NT + ASS LGY Q AM +AE L
Sbjct: 250 DADDAYADLTNVDAATVTSVRRRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEEL 308
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
YT G+I+YPRT++T YP + L +G+ E LL + G + DH
Sbjct: 309 YTTGYITYPRTDNTVYPDDLEEDALLDEFVGAGHFGEDAEALLEQDDITATEGDEETTDH 368
Query: 185 PPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVS 218
PPI P L D W +Y V + F TV+
Sbjct: 369 PPIHPTGEIPPKADLSDDEWEIYELVVRRFFATVA 403
>gi|344212444|ref|YP_004796764.1| DNA topoisomerase I [Haloarcula hispanica ATCC 33960]
gi|343783799|gb|AEM57776.1| DNA topoisomerase I [Haloarcula hispanica ATCC 33960]
Length = 841
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 10/215 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F PE +W + L +NG + ++ E ++++ D
Sbjct: 190 GRVQSPTLKLIVDREREIQAFDPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVED 249
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + V + + + P NT + ASS LGY Q AM +AE L
Sbjct: 250 DADDAYADLTGVNAATVTSVRRRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEEL 308
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDH 184
YT G+I+YPRT++T YP + L +G+ E+LL + G + DH
Sbjct: 309 YTTGYITYPRTDNTVYPDDLEEDALLDEFVGAGHFGEDAEKLLEQDDITATEGDEETTDH 368
Query: 185 PPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVS 218
PPI P + L D W +Y V + F TV+
Sbjct: 369 PPIHPTGEIPPKVDLSDDEWEIYELVVRRFFATVA 403
>gi|303233186|ref|ZP_07319859.1| DNA topoisomerase [Atopobium vaginae PB189-T1-4]
gi|302480771|gb|EFL43858.1| DNA topoisomerase [Atopobium vaginae PB189-T1-4]
Length = 918
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 22/227 (9%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGY--------------------EL 52
G QTPTL V++ + +F PE +W + L +
Sbjct: 241 GRVQTPTLALVVEKERERQAFIPEDYWVISATLHEGAEGAEGANAAGAGAAINADADGSF 300
Query: 53 KLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALG 112
K + + A V + + EK + P NT +L + A++A G
Sbjct: 301 KATHTTARFTNKSEADAVYAAVKDASCARITNREEKSRTTRPPAPFNTTSL-QAAAAAEG 359
Query: 113 YGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE-G 171
P M++AE LY +G ISYPR ++T YPSS + R ++ L P + Y E+LLA+
Sbjct: 360 LSPARTMRIAESLYMEGLISYPRVDNTVYPSSLNLRECVTMLKKVPQYRPYCEQLLAQPQ 419
Query: 172 YAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
R DHPPI P A L AW+LY+ + + FL T+S
Sbjct: 420 LHATRGKQQTTDHPPIYPTAPADPQKLQPAAWKLYNLIARRFLATLS 466
>gi|448349641|ref|ZP_21538473.1| DNA topoisomerase I [Natrialba taiwanensis DSM 12281]
gi|445639434|gb|ELY92545.1| DNA topoisomerase I [Natrialba taiwanensis DSM 12281]
Length = 801
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 98/222 (44%), Gaps = 17/222 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD------- 65
G Q+PTL V R +I +F PE +W L + + + ++ +D D
Sbjct: 191 GRVQSPTLRLIVDREREIQAFDPEDYWELVADVAKGEEAFEAQY---FYYDEDDNEAERV 247
Query: 66 ----VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
A + + Q V+D++ + + P NT ++ A S LGY + AM +
Sbjct: 248 WEEAAAEEVFETLSQRETATVVDVNRRTRTDSPPAPFNTTQFIRAAGS-LGYSAKRAMSI 306
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-D 180
AE LYT G+I+YPRT++T YP D L +P G+ E LL P G +
Sbjct: 307 AEDLYTAGYITYPRTDNTVYPDDLDPEELLDEFVGHPSLGESAESLLETDDIVPTEGDEE 366
Query: 181 AGDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
DHPPI P + D W ++ V + F TV+ D
Sbjct: 367 TTDHPPIHPTGEIPARGDVSDDEWDVFELVVRRFYATVAADA 408
>gi|328955028|ref|YP_004372361.1| DNA topoisomerase I [Coriobacterium glomerans PW2]
gi|328455352|gb|AEB06546.1| DNA topoisomerase I [Coriobacterium glomerans PW2]
Length = 869
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 2/206 (0%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL V R + +F PE +W + K+ + D A
Sbjct: 240 GRVQTPTLALVVARERERLAFVPEDYWQIRGIGASGDTAFKIAHATARFTDEQKAKTAFA 299
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V ++ ++ + + P NT +L + A+++ G P M++AE LY G IS
Sbjct: 300 HVQGKTSGTIVKVATRARKQAPPAPFNTTSL-QAAAASEGISPARTMRIAESLYMSGLIS 358
Query: 133 YPRTESTAYPSSFDFRGTLSAL-ANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMR 191
YPR ++T YP S D +S L A++P +++LA R T+ DHPPI P
Sbjct: 359 YPRVDNTVYPPSEDLAAIVSGLAASSPALAPVCKKVLAGPMKPTRGKTETTDHPPIHPTG 418
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTV 217
+ + L +LY+ + + FL T+
Sbjct: 419 QGSPESLDGGQRKLYNLIARRFLATL 444
>gi|448648053|ref|ZP_21679531.1| DNA topoisomerase I [Haloarcula californiae ATCC 33799]
gi|445775923|gb|EMA26918.1| DNA topoisomerase I [Haloarcula californiae ATCC 33799]
Length = 1364
Score = 99.8 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 65/215 (30%), Positives = 95/215 (44%), Gaps = 10/215 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R I +F PE +W + L +NG + ++ E ++++ D
Sbjct: 190 GRVQSPTLKLIVDRERDIQAFDPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVED 249
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + V + + + P NT + ASS LGY Q AM +AE L
Sbjct: 250 DADDAYADLTNVDAATVTSVRRRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEEL 308
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
YT G+I+YPRT++T YP + L +G+ E LL + G + DH
Sbjct: 309 YTTGYITYPRTDNTVYPDDLEEDALLDEFVGAGHFGEDAEALLEQDDITATEGDEETTDH 368
Query: 185 PPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVS 218
PPI P L D W +Y V + F TV+
Sbjct: 369 PPIHPTGEIPPKADLSDDEWEIYELVVRRFFATVA 403
>gi|448630882|ref|ZP_21673337.1| DNA topoisomerase I [Haloarcula vallismortis ATCC 29715]
gi|445755256|gb|EMA06646.1| DNA topoisomerase I [Haloarcula vallismortis ATCC 29715]
Length = 827
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 97/215 (45%), Gaps = 10/215 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F PE +W + L +NG + ++ E ++++ D
Sbjct: 190 GRVQSPTLKLIVDREREIQAFDPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVED 249
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + V + + + P NT + ASS LGY Q AM +AE L
Sbjct: 250 DADDAYADLTSVDAATVTSVRRRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEEL 308
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDH 184
YT G+I+YPRT++T YP + L +G+ E LL + G + DH
Sbjct: 309 YTTGYITYPRTDNTVYPDDLEEDALLDEFVGAGHFGEDAEALLEQADITATEGDEETTDH 368
Query: 185 PPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVS 218
PPI P + L D W +Y V + F TV+
Sbjct: 369 PPIHPTGEIPPKVDLSDDEWEIYELVVRRFFATVA 403
>gi|433592040|ref|YP_007281536.1| topoisomerase IA [Natrinema pellirubrum DSM 15624]
gi|448334373|ref|ZP_21523551.1| DNA topoisomerase I [Natrinema pellirubrum DSM 15624]
gi|433306820|gb|AGB32632.1| topoisomerase IA [Natrinema pellirubrum DSM 15624]
gi|445620259|gb|ELY73765.1| DNA topoisomerase I [Natrinema pellirubrum DSM 15624]
Length = 843
Score = 99.8 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 102/233 (43%), Gaps = 28/233 (12%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLE-------------WERQ 59
G Q+PTL V R +I +F PE +W L L ++ + E +E Q
Sbjct: 191 GRVQSPTLKLIVDREREIEAFDPEDYWELFADLRKSEAQRASETSSGEEPRDDDTSFESQ 250
Query: 60 KLF---DFDVATMFQKLVMQDRILE---------VIDISEKQESKVRPCGLNTVNLLKVA 107
+ D + A + D + E V+D++ + + P NT ++ A
Sbjct: 251 YFYRDEDGNEAERVWEEETADEVYETLADRESATVVDVNRRTRTDTPPEPFNTTQFIR-A 309
Query: 108 SSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERL 167
+ A+GY + AM +AE LYT G+I+YPRT++T YP D L + GD E L
Sbjct: 310 AGAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDEFTGHSTLGDSAESL 369
Query: 168 LAEGYAKPRSG-TDAGDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
L P G + DHPPI P + + D W ++ V + F TV+
Sbjct: 370 LEADEITPTEGDEETTDHPPIHPTGEIPSRGDVSDDEWEIFELVVRRFYATVA 422
>gi|15679619|ref|NP_276736.1| DNA topoisomerase I [Methanothermobacter thermautotrophicus str.
Delta H]
gi|14423958|sp|O27661.1|TOP1_METTH RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|2622750|gb|AAB86097.1| DNA topoisomerase I [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 718
Score = 99.4 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 10/210 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VATMFQ 71
G QTPTL V+R +I FKP +W + L G + E +R K+F + V ++ +
Sbjct: 204 GRVQTPTLAILVEREKEIRDFKPVPYWIIRAEL---GEGIIAESKRGKIFKRELVDSILE 260
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
K D EV D+ + + P + L A G+ P+ +A+ LYT+G+
Sbjct: 261 KCQGSDA--EVKDVRVRDTIRKPPVPFDLGTLQSEAYRVFGFSPKKTQTIAQNLYTEGYT 318
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPITPM 190
SYPRT S P S + L LA NP +G ++ERL G KP G D HP I P
Sbjct: 319 SYPRTSSQKLPESIGYEKILKNLAKNPRFGVHIERL--RGPLKPHEGKKEDDAHPAIHPT 376
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ L KD ++Y + F+ D
Sbjct: 377 GLLPSE-LSKDEKKVYDLIVHRFISVFGED 405
>gi|448382895|ref|ZP_21562324.1| DNA topoisomerase I [Haloterrigena thermotolerans DSM 11522]
gi|445660075|gb|ELZ12872.1| DNA topoisomerase I [Haloterrigena thermotolerans DSM 11522]
Length = 843
Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 28/233 (12%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW---------------- 56
G Q+PTL V R +I +F PE +W + L ++ + E
Sbjct: 191 GRVQSPTLKLIVDREREIEAFDPEDYWEIFADLRKSEAQRASETSSGEEPRDDDTAFESQ 250
Query: 57 ---------ERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVA 107
E +++++ ++A + + V+D++ + + P NT ++ A
Sbjct: 251 YFYRDEDGNEAERVWEEEIADEVYETLSDRESATVVDVNRRTRTDTPPEPFNTTQFIR-A 309
Query: 108 SSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERL 167
+ A+GY + AM +AE LYT G+I+YPRT++T YP D L + GD E L
Sbjct: 310 AGAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDEFTGHSTLGDSAESL 369
Query: 168 LAEGYAKPRSG-TDAGDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
L P G + DHPPI P + + D W ++ V + F TV+
Sbjct: 370 LEADEITPTEGDEETTDHPPIHPTGEIPSRGDVSDDEWEIFELVVRRFYATVA 422
>gi|71756203|ref|XP_829016.1| DNA topoisomerase III [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834402|gb|EAN79904.1| DNA topoisomerase III, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|144583728|gb|ABP01566.1| topoisomerase IIIalpha [Trypanosoma brucei brucei]
gi|261334956|emb|CBH17950.1| DNA topoisomerase III, putative [Trypanosoma brucei gambiense
DAL972]
Length = 918
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD-FDVA 67
+L +GPCQ PTLGF VQR + F PE ++TL +Q+G + R ++D A
Sbjct: 200 VLSFGPCQFPTLGFLVQRGWEQKGFVPEDYFTL---TLQHG-DTSFNSVRGPIYDKIAAA 255
Query: 68 TMFQKLVMQDRI---LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ Q++ + R EV+++ ++ + P L+TV L K+ ++ L M AE
Sbjct: 256 VVLQQMFDEARTRPEAEVVEVMKRPNRRRPPFPLSTVMLQKLCTAHLRISSDQCMTWAES 315
Query: 125 LYTQGFISYPRTESTAYP-SSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR----SGT 179
LY +G+ISYPRTE+ ++ + + + + NP +VE +LA+ K R G
Sbjct: 316 LYQEGYISYPRTETDSFSFTDNELLDIVGSQRRNPEVSGFVEAMLADPNRKFRRPLNGGH 375
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
D HPPI P + G+ +LY+ + +HFL SPD
Sbjct: 376 DDKAHPPIYPTKPMPAANDGR--AKLYNLIVRHFLACTSPD 414
>gi|345006355|ref|YP_004809208.1| DNA topoisomerase [halophilic archaeon DL31]
gi|344321981|gb|AEN06835.1| DNA topoisomerase [halophilic archaeon DL31]
Length = 871
Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 72/226 (31%), Positives = 106/226 (46%), Gaps = 24/226 (10%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHP--------------YLVQNGYELKLEWER 58
G Q PTL V R +I +F + +W L+ YL +G E + W+
Sbjct: 191 GRVQGPTLKLLVDREREIQAFDSDDYWELYADLTGEEGAFEAQYFYLDDDGTEARRVWDE 250
Query: 59 QKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
DVA F+ L + +V ++S + + P NT ++ A+SALGY Q A
Sbjct: 251 GAA---DVA--FEALEAAE-TADVEEVSRRTRTDDPPAPFNTTQFIR-AASALGYSAQRA 303
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG 178
M +AE LYT G+I+YPRT++T YP + L A +G+ VE LL + +P G
Sbjct: 304 MSMAEELYTAGYITYPRTDNTVYPEDLEPEELLDAFTET-FFGESVEELLEQEEIEPTEG 362
Query: 179 -TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+ DHPPI P D L D W ++ V + F T +P +
Sbjct: 363 DEETTDHPPIHPTGEMPTD-LDDDEWEVFELVVRRFFATCAPSATW 407
>gi|448328025|ref|ZP_21517341.1| DNA topoisomerase I [Natrinema versiforme JCM 10478]
gi|445616620|gb|ELY70240.1| DNA topoisomerase I [Natrinema versiforme JCM 10478]
Length = 826
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 11/216 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQKLFDF 64
G Q+PTL V R +I +F PE +W L L ++ ++ E +++++
Sbjct: 191 GRVQSPTLKLIVDREREIQAFDPEDYWELFADLEKDEMSFGTQYFYRDEDDNEAERIWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A + + V+D++ + + P NT ++ A+ A+GY + AM +AE
Sbjct: 251 ATADEVYETLADRDAATVVDVNRRTRTDTPPEPFNTTQFIR-AAGAIGYSAKRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP D L +P G+ E LL P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEDLLDEFVGHPSLGESAESLLEADDIVPTEGDEETTD 369
Query: 184 HPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVS 218
HPPI P T + D W ++ V + F TV+
Sbjct: 370 HPPIHPTGEIPTRGDVSDDEWEVFELVVRRFYATVA 405
>gi|210630404|ref|ZP_03296439.1| hypothetical protein COLSTE_00323 [Collinsella stercoris DSM 13279]
gi|210160486|gb|EEA91457.1| DNA topoisomerase [Collinsella stercoris DSM 13279]
Length = 863
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 2/206 (0%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL V+R + +F PE +W + +G E K+ + D A
Sbjct: 254 GRVQTPTLALVVERERERMAFVPEDYWQIRGMGEASGQEFKIAHTTVRFTDKAAAEAAFA 313
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V V ++++ + P NT L+ A++A G P M++AE LY GFIS
Sbjct: 314 HVSGAETGTVTAVAKRSRKQQPPVPFNT-TALQAAAAAEGISPARTMRIAESLYMSGFIS 372
Query: 133 YPRTESTAYPSSFDFRGTLSALANN-PVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMR 191
YPR ++T YP + D G + LA+ P +++LA R + DHPPI P
Sbjct: 373 YPRVDNTVYPKTLDIEGIVKGLASGTPALAPVCKKVLAGPLTPTRGKVETTDHPPIHPTG 432
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTV 217
L +LY+ + + FL T+
Sbjct: 433 QGDPTTLDGGQLKLYNLIARRFLATL 458
>gi|448681338|ref|ZP_21691471.1| DNA topoisomerase I [Haloarcula argentinensis DSM 12282]
gi|445767871|gb|EMA18964.1| DNA topoisomerase I [Haloarcula argentinensis DSM 12282]
Length = 827
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 97/215 (45%), Gaps = 10/215 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-------ERQKLFDFD 65
G Q+PTL V R +I +F PE +W + L +NG + ++ E ++++ D
Sbjct: 190 GRVQSPTLKLIVDREREIQAFDPEDYWEIFADLQKNGSGFEAQYFYDDDGKEAERVWVED 249
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + V + + + P NT + ASS LGY Q AM +AE L
Sbjct: 250 DADDAYADLTGVDAATVTSVRRRTRTDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEEL 308
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDH 184
YT G+I+YPRT++T YP + L +G+ E LL + G + DH
Sbjct: 309 YTTGYITYPRTDNTVYPDDLEEDALLDEFVGAGHFGEDAETLLEQDDITATEGDEETTDH 368
Query: 185 PPITPMRSATEDM-LGKDAWRLYSYVCQHFLGTVS 218
PPI P + L D W +Y V + F TV+
Sbjct: 369 PPIHPTGEIPPKVDLSDDEWEIYELVVRRFFATVA 403
>gi|448363205|ref|ZP_21551808.1| DNA topoisomerase I [Natrialba asiatica DSM 12278]
gi|445647174|gb|ELZ00154.1| DNA topoisomerase I [Natrialba asiatica DSM 12278]
Length = 826
Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 19/222 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTL--------HPYLVQNGYELKLEWERQKLFDF 64
G Q+PTL V R +I +F P+ +W L + Q Y + + E +++++
Sbjct: 191 GRVQSPTLRLIVDREREIQAFDPKDYWELVADVAKGEEAFEAQYFYYDEDDNEAERVWEE 250
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A + + Q V+D++ + + P NT ++ A S LGY + AM +AE
Sbjct: 251 AAAEEAFETLSQRETATVVDVNRRTRTDSPPAPFNTTQFIRAAGS-LGYSAKRAMSIAED 309
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LYT G+I+YPRT++T YP D L +P G+ E LL P G + D
Sbjct: 310 LYTAGYITYPRTDNTVYPDDLDPEELLDDFVGHPSLGESAESLLDADDIVPTEGDEETTD 369
Query: 184 HPPI-----TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P R D D W ++ V + F TV+ D
Sbjct: 370 HPPIHPTGEIPARGDVSD----DEWDVFELVVRRFYATVAAD 407
>gi|254168173|ref|ZP_04875020.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|197622939|gb|EDY35507.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
Length = 747
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 17/220 (7%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ----NGYELKLEWERQKLFDFD 65
L G Q+PTL V+R +I +F P +W + + +G + + +++ +
Sbjct: 190 LSVGRVQSPTLALIVKREKEIENFVPTPYWNIKGLFFKRRNFSGMHISNPFWKEE----E 245
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRP-CGLNTVNLLKVASSALGYGPQMAMQLAER 124
+++K V + +V+D + ++ K+RP NT L A+ LG+ AM+LAE
Sbjct: 246 AMEVYEK-VKDTKSAKVLDFIQ-EDRKIRPPIPFNTTEFLSEATK-LGFSAARAMRLAEE 302
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LY G+ISYPRT++T YP + L +L + + + +L E P G ++ D
Sbjct: 303 LYMGGYISYPRTDNTVYPKTLSINSILKSLEKSK-FKEEALKLQKERRRYPTRGKKESTD 361
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
HPPI P R A L D ++Y V + F+ T++PD +Y
Sbjct: 362 HPPIVPTRGAN---LEGDKGKIYELVVRRFMATLAPDLEY 398
>gi|229816419|ref|ZP_04446720.1| hypothetical protein COLINT_03472 [Collinsella intestinalis DSM
13280]
gi|229807961|gb|EEP43762.1| hypothetical protein COLINT_03472 [Collinsella intestinalis DSM
13280]
Length = 860
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 2/206 (0%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL V+R + +F PE +W + + E K+ + D A
Sbjct: 241 GRVQTPTLALVVERERERMAFVPEDYWQIRGLGEASDQEFKVAHTTARFTDKAAAEAAFS 300
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V + V ++++ + P NT L+ A++A G P M++AE LY GFIS
Sbjct: 301 HVEGETTGTVTAVAKRSRKQQPPVPFNT-TALQAAAAAEGISPARTMRIAESLYMSGFIS 359
Query: 133 YPRTESTAYPSSFDFRGTLSALANN-PVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMR 191
YPR ++T YP + D G + LA+ P +++LA R + DHPPI P
Sbjct: 360 YPRVDNTVYPKTLDIEGIVRGLASGTPALAPVCKKILAGPLTPTRGKVETTDHPPIHPTG 419
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTV 217
L +LY+ + + FL T+
Sbjct: 420 QGDPTTLDGGQLKLYNLIARRFLATL 445
>gi|343420008|emb|CCD19226.1| DNA topoisomerase III, putative, (fragment) [Trypanosoma vivax
Y486]
Length = 601
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 19/223 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L +GPCQ PTLGF V+R + F PE+++TL + Q + R ++D AT
Sbjct: 153 VLSFGPCQIPTLGFVVRRSWEQREFVPEEYFTLALHHGQTVFSSC----RGSMYDQIAAT 208
Query: 69 M----FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ Q+ + EV+++ ++ + P L TV L K+A++ L + M E
Sbjct: 209 LVLEAMQESASEKPEAEVMEVVQRPNRRHPPVPLATVVLQKLAATHLRISSEQCMMWVES 268
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSAL-ANNPVWGDYVERLLAE---GYAKP-RSGT 179
LY +G++SYPRTE+ + + + ++ L + N G YV +L + + +P R G
Sbjct: 269 LYQEGYVSYPRTETDFFSLTDNELLEIAGLQSGNSEVGQYVSAMLGDRQNRFRRPLRGGH 328
Query: 180 DAGDHPPITPMRSATEDMLGKDAWR--LYSYVCQHFLGTVSPD 220
D HPPI P T+ M + R LY+ + HFL VSPD
Sbjct: 329 DDKAHPPIYP----TKLMPSSNDPRMPLYNLIVGHFLACVSPD 367
>gi|254167954|ref|ZP_04874802.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|289596012|ref|YP_003482708.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|197622997|gb|EDY35564.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|289533799|gb|ADD08146.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
Length = 747
Score = 96.3 bits (238), Expect = 9e-18, Method: Composition-based stats.
Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 17/220 (7%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ----NGYELKLEWERQKLFDFD 65
L G Q+PTL V+R +I +F P +W + + +G + + +++ +
Sbjct: 190 LSVGRVQSPTLALIVKREKEIENFVPTPYWNIKGLFFKRRNFSGMHISNPFWKEE----E 245
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRP-CGLNTVNLLKVASSALGYGPQMAMQLAER 124
V +++K V + +V+D + ++ K+RP NT L A+ LG+ AM+LAE
Sbjct: 246 VMEVYEK-VKDTKSAKVLDFVQ-EDRKIRPPIPFNTTEFLSEATK-LGFSAAKAMRLAEE 302
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGD 183
LY G+ISYPRT++T YP + L +L + + + +L E P G ++ D
Sbjct: 303 LYMGGYISYPRTDNTVYPKTLSINSILKSLEKSK-FKEEALKLQKERRRYPTRGKKESTD 361
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
HPPI P R A L D ++Y V + F+ T++ D +Y
Sbjct: 362 HPPIVPTRGAN---LEGDKGKIYELVVRRFMATLAQDLEY 398
>gi|448498502|ref|ZP_21610852.1| DNA topoisomerase I [Halorubrum coriense DSM 10284]
gi|445698611|gb|ELZ50652.1| DNA topoisomerase I [Halorubrum coriense DSM 10284]
Length = 865
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 15/219 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG---YELKLEW------ERQKLFD 63
G Q PTL V R +I +F PE +W L L ++ +E + + ER++++D
Sbjct: 195 GRVQGPTLKLIVDREREIEAFDPESYWELTGELAKSSGDPFEARYFYLNDEGNERERVWD 254
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
VA + + V D++ + ++ P NT ++ A S LG+ Q AM LAE
Sbjct: 255 EAVADALTEALDAADGATVDDVTRRTQTDDPPTPFNTTAFIRAAGS-LGHSAQRAMSLAE 313
Query: 124 RLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYA-KPRSG-TDA 181
LYT G+++YPRT++T YP + + L+ +G LL + +P G +
Sbjct: 314 DLYTAGYVTYPRTDNTVYPEDLEPEELIEELSAASTFGKDAASLLDDDREIEPTEGDEET 373
Query: 182 GDHPPITPMRS--ATEDMLGKDAWRLYSYVCQHFLGTVS 218
DHPPI P A D L D W +Y + + FL T +
Sbjct: 374 TDHPPIHPTGELPAAAD-LSDDEWEVYELIVRRFLATCA 411
>gi|221508293|gb|EEE33880.1| prokaryotic DNA topoisomerase, putative [Toxoplasma gondii VEG]
Length = 291
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 1/140 (0%)
Query: 82 VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAY 141
V D+ + +K RP L TV L K+AS L M +AE LY +G ISYPRTE+ +
Sbjct: 10 VTDVRGTERTKQRPVPLCTVELHKMASRKLRMSSARCMSIAESLYQRGIISYPRTETEVF 69
Query: 142 PSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITPMRSATEDMLGK 200
+ D + + WG Y ++L+ + P G D HPPI P++ L +
Sbjct: 70 SPTMDLLSLIRVHIGSTAWGTYAQKLVDGDFLWPSDGARDDKAHPPIHPLKLMQRSELEE 129
Query: 201 DAWRLYSYVCQHFLGTVSPD 220
+ W+LY +V +HFL S D
Sbjct: 130 EEWKLYEFVTRHFLACCSED 149
>gi|47206372|emb|CAF93528.1| unnamed protein product [Tetraodon nigroviridis]
Length = 449
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 49/61 (80%)
Query: 164 VERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
V+ LL+EG +PR GTDAGDHPPITPMRSA+E LG D WRLY Y+ +HF+ TVS DCKY
Sbjct: 1 VKALLSEGLNRPRKGTDAGDHPPITPMRSASEAELGCDGWRLYEYITRHFIATVSQDCKY 60
Query: 224 I 224
+
Sbjct: 61 L 61
>gi|402468347|gb|EJW03513.1| hypothetical protein EDEG_00195 [Edhazardia aedis USNM 41457]
Length = 1086
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 3/168 (1%)
Query: 54 LEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGY 113
+W+R LFD + K + + V + +K+ K+RP L TV L K +S
Sbjct: 300 FKWKRGNLFDKNFVLFMFKAISDASVCYVKSVEKKRVEKIRPLPLRTVELQKACASIFKI 359
Query: 114 GPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYA 173
M +AE+LY G+ISYPRTE+ ++ F F ++ L+ + + +Y ++L
Sbjct: 360 SSHEVMNVAEKLYNNGYISYPRTETDSFSPGFKFVDIINELSKDNHFTNYCKKLENGMMC 419
Query: 174 KPRSGTDAG-DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
PR G + H PI P++S + L ++Y YV + FLG +S +
Sbjct: 420 NPRKGKNNDMAHAPIYPLKSGSN--LSGVERKIYEYVSRRFLGCISKN 465
Score = 45.1 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLF 62
++ YGPCQ PTLGF V R L+ +F E F+TL+ + + +K +++ F
Sbjct: 192 VISYGPCQIPTLGFVVDRMLEKENFIGENFFTLNLIITKENVPIKCIAKKKSRF 245
>gi|139439563|ref|ZP_01772995.1| Hypothetical protein COLAER_02022 [Collinsella aerofaciens ATCC
25986]
gi|133775116|gb|EBA38936.1| DNA topoisomerase [Collinsella aerofaciens ATCC 25986]
Length = 785
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 6/210 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGY----ELKLEWERQKLFDFDVAT 68
G QTPTL V+R + +F PE +W + G K+ + + D D A
Sbjct: 162 GRVQTPTLALVVERERERMAFVPEDYWQIRGMGAAQGAAEDDRFKIAHKTARFTDKDAAE 221
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
V V ++++ + P T +L + A++A G P M++AE LY
Sbjct: 222 AAYGHVDGVATATVAAVTKRSRKQQPPTPFATTSL-QAAAAAEGISPARTMRIAESLYMA 280
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALAN-NPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
G ISYPR ++T YP++ D +S LA NP +++LA R + DHPPI
Sbjct: 281 GLISYPRVDNTVYPATLDLGAVVSDLAKINPALAPVCKKVLAGPMKPTRGKVETTDHPPI 340
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTV 217
P L +LY + + FL T+
Sbjct: 341 YPTGEGDPSALDGGQRKLYDLIARRFLATL 370
>gi|315425546|dbj|BAJ47207.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
gi|343484402|dbj|BAJ50056.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
Length = 606
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVA 67
++ +G CQTPTL F V+R +I FKP+K+W + L + +G E K Q++++ D A
Sbjct: 189 VISWGSCQTPTLNFVVEREKEIQQFKPQKYWVIEATLRKASGEEFKAAT--QQIWNRDEA 246
Query: 68 T-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+F+K + V ++ +++ RP + T ++L+ + G + + E LY
Sbjct: 247 EQVFEKARKAGEAV-VTSYTKSEKTLPRPLPMRTDDVLRDLTRITGVSANRLLSMMEELY 305
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHP 185
+G+ISYPRT++ Y FDF+ L A+ D + PR+G+ D G HP
Sbjct: 306 AEGYISYPRTDTNRYRRGFDFQTPLKAVTAADALRDAKP---DKAEPDPRNGSRDDGAHP 362
Query: 186 PITPM 190
PI P+
Sbjct: 363 PIYPV 367
>gi|320582566|gb|EFW96783.1| DNA topoisomerase [Ogataea parapolymorpha DL-1]
Length = 311
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Query: 82 VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAY 141
V+ + K S P L TV + K + + + + +AE+LY GFISYPRTE+ +
Sbjct: 8 VVSLDTKPTSNWAPLPLTTVEMQKDCARFFKFSAKQTLTIAEKLYNSGFISYPRTETDRF 67
Query: 142 PSSFDFRGTLSALANNPVWGDYVERLLAEG--YAKPRSGT-DAGDHPPITPMRSATEDML 198
P + D + + + + WG Y + LL +G + +PR G+ D HPPI P+ + + L
Sbjct: 68 PKNMDLKKLIQSQTQSQTWGQYAQMLLNDGSKFRQPREGSHDDKAHPPIHPVIFTSGESL 127
Query: 199 GKDAWRLYSYVCQHFLGTVSPDC 221
+ +LY YV + FLG S D
Sbjct: 128 NANERKLYEYVVRRFLGCCSKDA 150
>gi|126466161|ref|YP_001041270.1| DNA topoisomerase I [Staphylothermus marinus F1]
gi|126014984|gb|ABN70362.1| DNA topoisomerase I [Staphylothermus marinus F1]
Length = 723
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 4/218 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+IL G QTPTL + V++ ++ F P ++L + +N YE+ +E++ + + A
Sbjct: 240 VILSAGRVQTPTLRYVVEKDIERRLFIPLPQYSLSINIFKNNYEIHVEYKGKSVETKKNA 299
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + L V EK + P N +L + A+ G+ P +AE+LY
Sbjct: 300 KEIIDEIKRTGYLIVKKYEEKIYTLNPPPAFNLGDLQEEAARIYGFSPYKTQSIAEKLYL 359
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSGT-DAGDH 184
ISYPRT S P + +++ ++ L+ + + V LL E G KP G+ D H
Sbjct: 360 DALISYPRTNSQKLPPTLNYKAIMNKLSRINNYKELVSNLLVETKGVLKPVQGSKDDPAH 419
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P I P +D LGKD W++Y + + FL + +
Sbjct: 420 PAIYPTGVKPKD-LGKDEWKIYDLIVRRFLAAFASKAR 456
>gi|315427545|dbj|BAJ49146.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
Length = 608
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 7/181 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVA 67
++ +G CQTPTL F V+R +I FKP+K+W + L + +G E K Q++++ D A
Sbjct: 189 VISWGSCQTPTLNFVVEREKEIQQFKPQKYWVIEATLRKASGEEFKAAT--QQIWNRDEA 246
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
K + V ++ +++ RP + T ++L+ + G + + E LY
Sbjct: 247 EQVFKKARKAGEAVVTSYTKSEKTLPRPLPMRTDDVLRDLTRITGISANRLLSMMEELYA 306
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPP 186
+G+ISYPRT++ Y FDF+ L A+ D + PR+G+ D G HPP
Sbjct: 307 EGYISYPRTDTNRYRRGFDFQTPLKAVTAADALRDAKP---DKAEPDPRNGSRDDGAHPP 363
Query: 187 I 187
I
Sbjct: 364 I 364
>gi|297527156|ref|YP_003669180.1| DNA topoisomerase I [Staphylothermus hellenicus DSM 12710]
gi|297256072|gb|ADI32281.1| DNA topoisomerase I [Staphylothermus hellenicus DSM 12710]
Length = 723
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 4/214 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+IL G QTPTL + V++ ++ F P ++L + +N YE+ +E++ + + A
Sbjct: 240 VILSAGRVQTPTLRYIVEKDIERRLFIPLPQYSLSINISKNNYEIHVEYKGKAVETKKKA 299
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
K + L V EK+ P N +L + A+ + P +AE+LY
Sbjct: 300 KEIIKDIKNTGYLTVKKYEEKKYWLNPPPAFNLGDLQEEAARIYRFSPYKTQSIAEKLYL 359
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSG-TDAGDH 184
ISYPRT S P + +++G ++ L+ + + + LL E G KP G D H
Sbjct: 360 DALISYPRTNSQKLPPTLNYKGIMNKLSRINNYKELISNLLVETRGVLKPVQGPKDDPAH 419
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
P I P +D LGKD W++Y + + FL +
Sbjct: 420 PAIYPTGVKPKD-LGKDEWKIYDLIVRRFLAAFA 452
>gi|260801483|ref|XP_002595625.1| hypothetical protein BRAFLDRAFT_56938 [Branchiostoma floridae]
gi|229280872|gb|EEN51637.1| hypothetical protein BRAFLDRAFT_56938 [Branchiostoma floridae]
Length = 346
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 70/125 (56%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY I +F PE F L + W+R +LF+
Sbjct: 210 VISYGSCQFPTLGFVVERYKAIQNFIPEMFHKLKVSHETEDGRVDFNWKRNRLFNHTACL 269
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ ++VM++ I VI ++ + +SK RP L TV L K+AS L + M++AE+LY Q
Sbjct: 270 VLYQIVMENPIARVISVNSRPKSKWRPQPLETVELEKLASRKLRINAKETMKIAEKLYNQ 329
Query: 129 GFISY 133
G + +
Sbjct: 330 GLVFF 334
>gi|56757101|gb|AAW26722.1| SJCHGC08417 protein [Schistosoma japonicum]
Length = 139
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 114 GPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYA 173
G + AMQLAERLYT+GFISYPRTE+ +P D + + + W D+ R+L G
Sbjct: 2 GAKYAMQLAERLYTKGFISYPRTETKIFPPDLDLKSLVRVQTQDFRWSDFANRILERG-P 60
Query: 174 KPRSGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
PR+G + HPPI P+++ D L D RLY V +HFL +S D +
Sbjct: 61 NPRNGKSSDKAHPPIHPLKAG--DSLQGDEARLYELVTRHFLACLSADAE 108
>gi|392351278|ref|XP_002742497.2| PREDICTED: DNA topoisomerase 3-alpha [Rattus norvegicus]
Length = 977
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 71/126 (56%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+R+ I +F PE F + ++ W+R +LF+
Sbjct: 238 LISYGSCQFPTLGFVVERFKAIQAFVPEVFHRIKVTHDHKDGTVEFNWKRYRLFNHTACL 297
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ +L M+D + V+++ K +SK RP L+TV L K+AS L + M++AE+LYTQ
Sbjct: 298 VLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQ 357
Query: 129 GFISYP 134
G P
Sbjct: 358 GVSQQP 363
>gi|312136406|ref|YP_004003743.1| DNA topoisomerase i [Methanothermus fervidus DSM 2088]
gi|311224125|gb|ADP76981.1| DNA topoisomerase I [Methanothermus fervidus DSM 2088]
Length = 705
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 11/212 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA-TMFQ 71
G QTPTL V R +I FKP+ +W + +++ QK+FD + A + +
Sbjct: 200 GRVQTPTLSILVDREREIKKFKPKTYWVIEA----KTKFFTAKFKEQKIFDKNKALKIVK 255
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ ++ I++ + I+++ + P L T L A G+ P+ LA+ LY G+I
Sbjct: 256 ECKNKNAIVKSVKITKRYRNPPVPFDLTT--LQSEAYRLFGFSPRKTQSLAQNLYLGGYI 313
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPITPM 190
SYPRT S P S D+ L+ NP + Y+ +L KP G + HP I P
Sbjct: 314 SYPRTSSQKLPPSIDYEKIFEGLSKNPKFERYISKLSKP--FKPYEGKKTDEAHPAIHPT 371
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
++ L +D +LY + F+ + K
Sbjct: 372 GVMPKN-LNEDESKLYELIVHRFIAVFADKAK 402
>gi|241594082|ref|XP_002404244.1| DNA topoisomerase III, putative [Ixodes scapularis]
gi|215502316|gb|EEC11810.1| DNA topoisomerase III, putative [Ixodes scapularis]
Length = 670
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF V+RY QI +F PE FW +H ++ W+R +LFD+ +
Sbjct: 252 LVSYGSCQFPTLGFVVERYRQILNFVPEPFWKIHLTHKKDDILADFSWKRHRLFDYQLCF 311
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTV----NLLKVASSALG------YGPQMA 118
+ + +Q + V+++ K +SK RP ++TV + +S+L P +
Sbjct: 312 LLYQRCLQGEVSVVVEMKCKPKSKWRPQPMDTVVSGEAPFYLGASSLSNCWRVLRNPGTS 371
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTL-SALANNPVWGDYVERLLAEGYAKPRS 177
QL T G I R + R L SAL++ P D+ RLLA+G PR
Sbjct: 372 DQLPGSRTTCGMIRRLRHLT---------RNVLTSALSSAP--ADFARRLLADGLT-PRQ 419
Query: 178 GTDAGD-HPPITPMRSAT 194
GT + HPPI P++ A
Sbjct: 420 GTKSDQAHPPIHPIKHAA 437
>gi|109490882|ref|XP_001077625.1| PREDICTED: DNA topoisomerase 3-alpha [Rattus norvegicus]
Length = 735
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHRIKVTHDHKDGTVEFNWKRY 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGF 130
++AE+LYTQG
Sbjct: 349 RIAEKLYTQGL 359
>gi|324511395|gb|ADY44747.1| DNA topoisomerase 3 [Ascaris suum]
Length = 469
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 118 AMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRS 177
AM +AE+LY++GFISYPRTE+ +PS+ D + N WG++ + +L G A PR+
Sbjct: 6 AMAVAEKLYSKGFISYPRTETNKFPSNLDLNPLIEQQVANAEWGEFAQEVLNRG-ANPRN 64
Query: 178 GTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
GT + + HPPI P++ A L W +Y V +HFL VS D +
Sbjct: 65 GTKSDEAHPPIHPLKFALPSELVGYEWSIYELVVRHFLACVSIDAR 110
>gi|343424117|emb|CCD17943.1| DNA topoisomerase III, putative [Trypanosoma vivax Y486]
Length = 726
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 19/223 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L +GPCQ PTLGF V+R + F PE+++TL + Q + R ++D AT
Sbjct: 90 VLSFGPCQIPTLGFVVRRSWEQRGFVPEEYFTLALHHGQTVFSSC----RGSMYDQIAAT 145
Query: 69 M----FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ Q+ + EV ++ ++ + L TV L K+A++ L + M AE
Sbjct: 146 LVLEAMQESASEKPEAEVTEVVQRPNRRHPSVPLATVVLQKLAATHLRISSEQCMMWAES 205
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSAL-ANNPVWGDYVERLLAE---GYAKP-RSGT 179
LY +G++SYPRTE+ ++ + + ++ L + N G YV +L + + +P R G
Sbjct: 206 LYQEGYVSYPRTETDSFSLTDNELLEIAGLQSGNSEVGQYVSAMLGDRQNRFRRPLRCGH 265
Query: 180 DAGDHPPITPMRSATEDMLGKDAWR--LYSYVCQHFLGTVSPD 220
D P I P T+ M + R LY+ + +HFL VSPD
Sbjct: 266 DDKAFPQIYP----TKLMPSSNDPRMPLYNLIVRHFLACVSPD 304
>gi|300521518|gb|ADK25970.1| topoisomerase IA [Candidatus Nitrososphaera gargensis]
Length = 685
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 6/210 (2%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF-DVAT 68
L G Q PTL F V R L+I P+ +WT+ +N ++E+ K+ + +
Sbjct: 190 LSIGRVQGPTLAFAVDRELEIRLHVPDPYWTIAAQFEKNNQTFSAQYEKPKVGTLAEAKS 249
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + +D V D+ + + P N +L + A GP + +AE+LY Q
Sbjct: 250 IVSACIGRDGT--VSDVVDSKAVLGPPTPFNIGDLQREAYRLFKLGPGYTLAIAEKLYLQ 307
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG--TDAGDHPP 186
ISYPRT S P S + +S+L+ +G LL++G P G TD HP
Sbjct: 308 ALISYPRTSSQKLPPSIGYGKIISSLSRIGGYGQLTSMLLSKGRLVPNEGRMTDPA-HPA 366
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGT 216
I P A + L +++Y V + FL T
Sbjct: 367 IYPTGVAPQQKLSSLEFKVYDLVVKRFLAT 396
>gi|408402639|ref|YP_006860622.1| DNA topoisomerase IA [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408363235|gb|AFU56965.1| DNA topoisomerase IA [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 685
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 6/210 (2%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF-DVAT 68
L G Q PTL F V R L+I P+ +WT+ +N ++E+ K+ + +
Sbjct: 190 LSIGRVQGPTLAFAVDRELEIRLHVPDPYWTIAAQFEKNNQTFSAQYEKPKVGTLAEAKS 249
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + +D V D+ + + P N +L + A GP + +AE+LY Q
Sbjct: 250 IVSACIGRDGT--VSDVVDSKAVLGPPTPFNIGDLQREAYRLFKLGPGYTLAIAEKLYLQ 307
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG--TDAGDHPP 186
ISYPRT S P S + +S+L+ +G LL++G P G TD HP
Sbjct: 308 ALISYPRTSSQKLPPSIGYGKIISSLSRIGGYGQLTSMLLSKGRLVPNEGRMTDPA-HPA 366
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGT 216
I P A + L +++Y V + FL T
Sbjct: 367 IYPTGVAPQQKLSSLEFKVYDLVVKRFLAT 396
>gi|359415855|ref|ZP_09208246.1| DNA topoisomerase I [Candidatus Haloredivivus sp. G17]
gi|358033810|gb|EHK02324.1| DNA topoisomerase I [Candidatus Haloredivivus sp. G17]
Length = 683
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 7/209 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE-RQKLFDFDVAT 68
L G Q P L ++ I F+P+ +W + +L + ++ KLE++ +L+D + A
Sbjct: 193 LSTGRVQGPALAMLAEKERSIMEFEPDPYWEI--FLRNSEFDAKLEYDGEDRLWDEETAE 250
Query: 69 -MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+FQ + +D + V D+ + P N +L ASS P+ +A+ LY
Sbjct: 251 QIFQTVEGEDETI-VSDVDTRNYKHKVPVPFNLTDLQSEASSQFNINPKQTQAIAQTLYE 309
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPP 186
G ISYPRTES P+ ++ L + N + + +++L + P+ G D HP
Sbjct: 310 NGLISYPRTESQKLPAKIGYKNLLKKIKNQENYTELAKKVLDKDEVYPKQGKKEDDAHPA 369
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLG 215
I P + L K ++Y + + FL
Sbjct: 370 IYPTGEQPGN-LSKKERKVYDLIVKRFLA 397
>gi|159152386|gb|ABW92701.1| topoisomerase 3 beta [Drosophila melanogaster]
Length = 266
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 137 ESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSATED 196
E+ YP++FD L L + +G+ +L + PR G DAGDHPPITPM+
Sbjct: 1 ETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKLGNRS 59
Query: 197 MLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+D WR+Y ++C+HF+GTVS D KY
Sbjct: 60 DFDRDTWRVYEFICRHFMGTVSKDLKY 86
>gi|410722055|ref|ZP_11361370.1| DNA topoisomerase I, archaeal [Methanobacterium sp. Maddingley
MBC34]
gi|410597861|gb|EKQ52468.1| DNA topoisomerase I, archaeal [Methanobacterium sp. Maddingley
MBC34]
Length = 718
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 14/209 (6%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G QTPTL V+R +I SF PE +W + + + + + ++ K+FD V
Sbjct: 194 LSAGRVQTPTLAILVEREKEIQSFIPEPYWLIKAKIEGD---IIADHKKGKIFDKKV--- 247
Query: 70 FQKLVMQD---RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
QK ++ D + V IS K+ ++ P + +L A G+ P+ +A+ LY
Sbjct: 248 -QKEILSDCEGKDALVSKISVKETPQLPPVPFDLGSLQSEAYGVFGFSPKKTQSIAQNLY 306
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HP 185
++G+ SYPRT S P S ++ L L N + VE+L KPR G + HP
Sbjct: 307 SEGYTSYPRTSSQKLPPSIGYKKILGQLKKNAAFRKQVEKLPEP--IKPREGKKTDEAHP 364
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFL 214
I P LG+D +LY + F+
Sbjct: 365 AIHPT-GLIPKGLGRDYQKLYELIVYRFI 392
>gi|159119187|ref|XP_001709812.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
gi|157437929|gb|EDO82138.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
Length = 896
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 59/267 (22%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLH------PYLVQNGYELKLEWERQKLFDFD 65
+GPCQ PTLG L +TLH P +G K + K +D
Sbjct: 253 FGPCQVPTLGLVHSNDLLSLKNHQSSSFTLHLVCDPRPLQTHSGSVFKGLADALKRWDSK 312
Query: 66 -------------------------------VATMFQKLVMQDRILEVIDISEKQESKVR 94
+ +F L Q RI+ V D+ EK + R
Sbjct: 313 HRNREKDDLQGLVFSPIDTSHFKSYLGSLPVLKLVFDTLQNQKRIVVVSDVEEKPYTVPR 372
Query: 95 PCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFD---FRGTL 151
P ++T+++ + S +L Q M +AE LYT+G ISYPRTE+ +YP++++ F+ +
Sbjct: 373 PHPVSTLDMQRALSESLS--SQSVMTIAESLYTRGLISYPRTETKSYPNTYNLSYFKQLV 430
Query: 152 SALANNP--------VWGDYVERLLAEGYAK------PRSGTDAGD--HPPITPMRSATE 195
LA+ P + DY + LL + PRS + + D H PI P+ +
Sbjct: 431 DKLAHMPPNVSPLCALLADYAQVLLDDSPGNPYTLQLPRSNSASTDNAHLPIHPLACPSR 490
Query: 196 DMLGKDAWRLYSYVCQHFLGTVSPDCK 222
L KD +Y Y+ + FL +VSPD +
Sbjct: 491 P-LDKDEELVYGYITRSFLASVSPDAR 516
>gi|159152376|gb|ABW92696.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152378|gb|ABW92697.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152380|gb|ABW92698.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152382|gb|ABW92699.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152384|gb|ABW92700.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152388|gb|ABW92702.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152390|gb|ABW92703.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152392|gb|ABW92704.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152394|gb|ABW92705.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152396|gb|ABW92706.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|159152398|gb|ABW92707.1| topoisomerase 3 beta [Drosophila melanogaster]
gi|295867439|gb|ADG51438.1| CG3458 [Drosophila melanogaster]
gi|295867441|gb|ADG51439.1| CG3458 [Drosophila melanogaster]
gi|295867443|gb|ADG51440.1| CG3458 [Drosophila melanogaster]
gi|295867445|gb|ADG51441.1| CG3458 [Drosophila melanogaster]
gi|295867447|gb|ADG51442.1| CG3458 [Drosophila melanogaster]
gi|295867449|gb|ADG51443.1| CG3458 [Drosophila melanogaster]
gi|295867451|gb|ADG51444.1| CG3458 [Drosophila melanogaster]
gi|295867453|gb|ADG51445.1| CG3458 [Drosophila melanogaster]
gi|295867455|gb|ADG51446.1| CG3458 [Drosophila melanogaster]
gi|295867457|gb|ADG51447.1| CG3458 [Drosophila melanogaster]
gi|295867459|gb|ADG51448.1| CG3458 [Drosophila melanogaster]
Length = 266
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 137 ESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSATED 196
E+ YP++FD L L + +G+ +L + PR G DAGDHPPITPM+
Sbjct: 1 ETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKLGNRS 59
Query: 197 MLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+D WR+Y ++C+HF+GTVS D KY
Sbjct: 60 DFDRDTWRVYEFICRHFMGTVSRDLKY 86
>gi|288559648|ref|YP_003423134.1| DNA topoisomerase I TopA [Methanobrevibacter ruminantium M1]
gi|288542358|gb|ADC46242.1| DNA topoisomerase I TopA [Methanobrevibacter ruminantium M1]
Length = 741
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 96/217 (44%), Gaps = 10/217 (4%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+ L G QTPTL V R +I SF PE +W + ++ Y++ + K+FD + A
Sbjct: 192 ISLSAGRVQTPTLSILVDREKEIQSFVPEPYWMIK---AKSDYDIIADHVEGKIFDEERA 248
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
Q +V + + + P N L A + G+ P+ A+ LY
Sbjct: 249 KKIY-ADCQGADADVTSVKVTESIRKPPIPFNLGGLQSEAHTVFGFSPKRTQVAAQNLYV 307
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG--TDAGDHP 185
G+ SYPRT S P S DF+ + LA +P + ++ L A+ KP G TDA HP
Sbjct: 308 GGYTSYPRTSSQKLPESLDFKNIFAGLAKDPEFKKHIFDLPAK--LKPNEGKKTDAA-HP 364
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P L D ++YS + F+ S + K
Sbjct: 365 AIHPT-GVLPSNLSADEAKIYSLIVYRFISVFSENSK 400
>gi|308159678|gb|EFO62200.1| DNA topoisomerase III [Giardia lamblia P15]
Length = 895
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 117/267 (43%), Gaps = 59/267 (22%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLH------PYLVQNGYELK-----LEW--ER 58
+GPCQ PTLG L +TLH P +G K L+W R
Sbjct: 253 FGPCQVPTLGLVHSNDLLSLKNHQSSSFTLHLVCDPRPLQTHSGSVFKGLADALKWWDNR 312
Query: 59 QKLFDFD------------------------VATMFQKLVMQDRILEVIDISEKQESKVR 94
++ + D + ++F L Q R++ + D+ EK + +R
Sbjct: 313 RRSREGDDLQGLVFSPIDTSHFKSYLGSLPILKSVFDTLQKQKRVVVISDVEEKPYTILR 372
Query: 95 PCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFD---FRGTL 151
P ++T+++ + S +L Q M +AE LYT+G ISYPRTE+ +YP+++ F
Sbjct: 373 PYPISTLDMQRALSESLS--SQSVMAIAESLYTRGLISYPRTETKSYPNTYSLSYFERLA 430
Query: 152 SALANNP--------VWGDYVERLLAEGYAK------PRSGTDAGD--HPPITPMRSATE 195
+ LA+ P V DY LL + PRS + + D H PI P+ +
Sbjct: 431 NKLAHMPPDISPLCTVLADYARILLDDSPGNPYILQLPRSTSTSTDNAHLPIHPLACPSR 490
Query: 196 DMLGKDAWRLYSYVCQHFLGTVSPDCK 222
L K +Y Y+ + FL ++SPD +
Sbjct: 491 P-LNKSEELVYGYITRSFLASISPDAQ 516
>gi|357489371|ref|XP_003614973.1| DNA topoisomerase [Medicago truncatula]
gi|355516308|gb|AES97931.1| DNA topoisomerase [Medicago truncatula]
Length = 438
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 105/232 (45%), Gaps = 24/232 (10%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
L L YG CQ+ LG V+R+ Q+ K +K+ + GY K+ + +D
Sbjct: 50 ATNLTLSYGLCQSALLGIVVERFNQVAKPKAQKY---NISFNDRGYGPKVTFTSPVWYDA 106
Query: 65 DVATMFQKLVMQDR---ILEV-IDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
+ D I+EV ++I+ K S P L T+ L K A+ P+ M
Sbjct: 107 KSKASKKLQSCSDEKATIVEVFVEITNKFHSP--PVPLTTMELEKFAAKYFKMTPKQTMD 164
Query: 121 LAERLYTQGFISYPRTESTAYP-SSFDFRGTLSALANNPVWGDYVERLLAEG---YAKPR 176
AE LYTQ FISYPRTE+ + ++ + R +S + WG Y LL + PR
Sbjct: 165 TAEDLYTQRFISYPRTETDGFSMNTKELRSIVSKQTKHEKWGSYASDLLDSNKGLWRDPR 224
Query: 177 S--GTDAGDHPPITPMRSATEDMLGKDAWR-----LYSYVCQHFLGTVSPDC 221
+ TD HPPI P++ + G W+ LY + +HFL +S D
Sbjct: 225 ACKHTDHS-HPPIHPIKFSNRKESG---WKDHQCVLYELIVRHFLACLSEDA 272
>gi|257075816|ref|ZP_05570177.1| DNA topoisomerase I [Ferroplasma acidarmanus fer1]
Length = 748
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 11/208 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL V+R +I SF PEK++ ++ G + + +E+ + + +F
Sbjct: 184 GRVQTPTLALIVEREEEIKSFVPEKYFVIN-VTFNKGIDFQGVYEKNIKDEDEANKIFNA 242
Query: 73 LVMQDRILEVIDISEKQESK--VRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ D I++ S K E K +P +T + L+ AS +G P AM++AE+LY G
Sbjct: 243 INGNDGIVK----SYKNEKKEVYKPPPFSTTDFLREASR-IGVTPSNAMKIAEKLYMSGL 297
Query: 131 ISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
ISYPRT++T Y S + + L E R + DHPPI P+
Sbjct: 298 ISYPRTDNTVYQRSIPLKSIAQKFEGTEFDTEAKMVLGQEKIYPSRGKVETTDHPPIYPV 357
Query: 191 RSATEDMLGKDAWR-LYSYVCQHFLGTV 217
+ + G A++ +Y + + FL T+
Sbjct: 358 SYPKKALTG--AYKNIYELIVRRFLATL 383
>gi|408382419|ref|ZP_11179963.1| DNA topoisomerase I [Methanobacterium formicicum DSM 3637]
gi|407814774|gb|EKF85397.1| DNA topoisomerase I [Methanobacterium formicicum DSM 3637]
Length = 718
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 10/207 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV-AT 68
L G QTPTL V+R +I SF PE +W + + + + + ++ K+FD V
Sbjct: 194 LSAGRVQTPTLAILVEREKEIQSFIPEPYWLIKAKIEGD---IIADHKKGKIFDKKVQEE 250
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ QD ++ I++ K+ ++ P + +L A G+ P+ +A+ LY++
Sbjct: 251 ILSDCEGQDAVVSKINV--KETPQLPPVPFDLGSLQSEAYGVFGFSPKKTQSIAQNLYSE 308
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ SYPRT S P S ++ L L N + +E+L KP G + HP I
Sbjct: 309 GYTSYPRTSSQKLPPSIGYKKILGQLKKNAAFRKQIEKLPEP--IKPHEGKKTDEAHPAI 366
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFL 214
P LG+D +LY + F+
Sbjct: 367 HPT-GLVPKGLGRDYQKLYELIVYRFI 392
>gi|347524481|ref|YP_004782051.1| DNA topoisomerase I [Pyrolobus fumarii 1A]
gi|343461363|gb|AEM39799.1| DNA topoisomerase I [Pyrolobus fumarii 1A]
Length = 676
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 65/215 (30%), Positives = 95/215 (44%), Gaps = 7/215 (3%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLE-WERQKLFDFDV 66
++L G Q+PTL +R + P + + +L LKL R+KL +
Sbjct: 198 VVLSAGRVQSPTLVEAAKREARRRLHVPYPRFNVQVWLAGREGRLKLTIASREKLIE--- 254
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A V V ++ ++E P N +L A+ GY P ++AE+LY
Sbjct: 255 AKRIADRVAARGYAFVSSVAGRREYVKPPPAFNLSDLQMEAARLYGYSPAFTQEIAEQLY 314
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSG-TDAGD 183
G ISYPRT S P + DFRG L LA+ P + V+RLL E G +P G +
Sbjct: 315 LDGLISYPRTNSQKLPHTLDFRGILEGLASIPAYTQLVKRLLLETRGVLRPVQGPKEDPA 374
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
HP I P + L + R+Y + + FL S
Sbjct: 375 HPAIHPTGAVPRRKLNRAEERIYDLIVRRFLAAFS 409
>gi|67624109|ref|XP_668337.1| DNA topoisomerase III beta-1 [Cryptosporidium hominis TU502]
gi|54659542|gb|EAL38114.1| DNA topoisomerase III beta-1 [Cryptosporidium hominis]
Length = 482
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 154 LANNPVWGDYVERLLAEGYAKPR-SGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQH 212
NN VWG Y LL +G+ PR G D GDHPPITP+RSAT++ L D+WRLY + +H
Sbjct: 2 FKNNSVWGSYSSDLLQKGFNLPRKDGLDLGDHPPITPVRSATQNDLDGDSWRLYDLITRH 61
Query: 213 FLGTVSPDCKYI 224
F T+S D K I
Sbjct: 62 FFATISNDIKII 73
>gi|323508815|dbj|BAJ77301.1| cgd6_2390 [Cryptosporidium parvum]
gi|323509797|dbj|BAJ77791.1| cgd6_2390 [Cryptosporidium parvum]
Length = 482
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 154 LANNPVWGDYVERLLAEGYAKPR-SGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQH 212
NN VWG Y LL +G+ PR G D GDHPPITP+RSAT++ L D+WRLY + +H
Sbjct: 2 FKNNSVWGSYSSDLLQKGFNLPRKDGLDLGDHPPITPVRSATQNDLDGDSWRLYDLITRH 61
Query: 213 FLGTVSPDCKYI 224
F T+S D K I
Sbjct: 62 FFATISNDIKMI 73
>gi|84489180|ref|YP_447412.1| hypothetical protein Msp_0366 [Methanosphaera stadtmanae DSM 3091]
gi|84372499|gb|ABC56769.1| TopA [Methanosphaera stadtmanae DSM 3091]
Length = 722
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 10/207 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF-DVAT 68
L G QTPTL +R +I F PE +W + L ++ + + ++ K+FD +V
Sbjct: 197 LSAGRVQTPTLAILTEREKEIQKFIPEPYWLIKAKLQKS---IVADHKKGKIFDKKEVDA 253
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + +D +E I+ ++ K P L A + G+ P+ Q+A+ LY +
Sbjct: 254 ILKNCKGKDATVE--KITNRKTKKDLPVPFELGTLQSEAYAQFGFTPRKTQQIAQNLYVE 311
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
G+ SYPRT S P S LS L+ +P + D + +L E KP G + HP I
Sbjct: 312 GYTSYPRTSSQKLPESLGLPNILSQLSKHPKYKDKISQL--EQPYKPHEGKKTDEAHPAI 369
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFL 214
P + +D + +D ++Y + F+
Sbjct: 370 HPTGTLPKD-ISEDYQKIYDLITYRFI 395
>gi|124027789|ref|YP_001013109.1| DNA topoisomerase I [Hyperthermus butylicus DSM 5456]
gi|123978483|gb|ABM80764.1| DNA topoisomerase I [Hyperthermus butylicus DSM 5456]
Length = 682
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 99/217 (45%), Gaps = 11/217 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G Q+PTL V R ++ F P ++T V EL + R ++ F++ +
Sbjct: 200 VLSAGRVQSPTLVEAVSRTIKRNLFVPLPYFT-----VTATVELGGKARRLQVASFELRS 254
Query: 69 MFQKLVMQDRI---LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
Q++ Q R L V + SE E P N +L AS LG+ P +LAE L
Sbjct: 255 EAQRVARQLRATGYLVVREYSEYVERIPPPYPFNLGDLQVEASRILGFSPYYTQKLAEEL 314
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL--AEGYAKPRSG-TDAG 182
Y +G ISYPRT S P + D + AL + + VE LL G + +G +
Sbjct: 315 YLEGLISYPRTNSQKIPPTIDISAIVQALVRQTRYRELVEYLLRATRGVLRVNNGPKEDP 374
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSP 219
HP I P L K+ RLY + + FL +++P
Sbjct: 375 AHPAIHPTGEPPHSGLSKNHLRLYDLIVRRFLASMAP 411
>gi|295867393|gb|ADG51415.1| CG3458 [Drosophila simulans]
Length = 226
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 141 YPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGK 200
YP++FD L L + +G+ +L + PR G DAGDHPPITPM+ +
Sbjct: 2 YPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKLGNRSDFDR 60
Query: 201 DAWRLYSYVCQHFLGTVSPDCKY 223
D WR+Y ++C+HF+GTVS D KY
Sbjct: 61 DTWRVYEFICRHFMGTVSRDLKY 83
>gi|222445728|ref|ZP_03608243.1| hypothetical protein METSMIALI_01370 [Methanobrevibacter smithii
DSM 2375]
gi|261349724|ref|ZP_05975141.1| DNA topoisomerase [Methanobrevibacter smithii DSM 2374]
gi|222435293|gb|EEE42458.1| DNA topoisomerase I [Methanobrevibacter smithii DSM 2375]
gi|288861679|gb|EFC93977.1| DNA topoisomerase [Methanobrevibacter smithii DSM 2374]
Length = 716
Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 64/209 (30%), Positives = 92/209 (44%), Gaps = 10/209 (4%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L L G QTPTL V R +I F PE +W + L +G E++ + K+FD A
Sbjct: 194 LKLSAGRVQTPTLSILVDREKEIKKFVPEPYWLIKALL--DG-EIEADHVDGKIFDKTRA 250
Query: 68 T-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+F D ++ I S P N L A + G+ P+ +A+ LY
Sbjct: 251 EEIFSNCENSDAAVDKIKYSNSTTKP--PVPFNLGGLQSEAYNVFGFSPKKTQTIAQSLY 308
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHP 185
T G+ SYPRT S P S DF+ L+ N + ++ L A+ KP G + HP
Sbjct: 309 TAGYTSYPRTSSQKLPESLDFKSIFLQLSKNSEFRTHISALPAK--LKPNEGKKEDAAHP 366
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFL 214
I P D L KD ++Y + F+
Sbjct: 367 AIHPT-GILPDKLDKDELKIYELIVYRFI 394
>gi|295867387|gb|ADG51412.1| CG3458 [Drosophila simulans]
gi|295867389|gb|ADG51413.1| CG3458 [Drosophila simulans]
gi|295867391|gb|ADG51414.1| CG3458 [Drosophila simulans]
gi|295867395|gb|ADG51416.1| CG3458 [Drosophila simulans]
gi|295867397|gb|ADG51417.1| CG3458 [Drosophila simulans]
gi|295867399|gb|ADG51418.1| CG3458 [Drosophila simulans]
gi|295867401|gb|ADG51419.1| CG3458 [Drosophila simulans]
gi|295867403|gb|ADG51420.1| CG3458 [Drosophila simulans]
gi|295867405|gb|ADG51421.1| CG3458 [Drosophila simulans]
gi|295867407|gb|ADG51422.1| CG3458 [Drosophila simulans]
gi|295867409|gb|ADG51423.1| CG3458 [Drosophila simulans]
gi|295867411|gb|ADG51424.1| CG3458 [Drosophila simulans]
gi|295867413|gb|ADG51425.1| CG3458 [Drosophila simulans]
gi|295867415|gb|ADG51426.1| CG3458 [Drosophila simulans]
gi|295867417|gb|ADG51427.1| CG3458 [Drosophila simulans]
gi|295867421|gb|ADG51429.1| CG3458 [Drosophila simulans]
gi|295867423|gb|ADG51430.1| CG3458 [Drosophila simulans]
gi|295867425|gb|ADG51431.1| CG3458 [Drosophila simulans]
gi|295867427|gb|ADG51432.1| CG3458 [Drosophila simulans]
gi|295867429|gb|ADG51433.1| CG3458 [Drosophila simulans]
gi|295867431|gb|ADG51434.1| CG3458 [Drosophila simulans]
gi|295867433|gb|ADG51435.1| CG3458 [Drosophila simulans]
gi|295867435|gb|ADG51436.1| CG3458 [Drosophila simulans]
gi|295867437|gb|ADG51437.1| CG3458 [Drosophila simulans]
gi|295867461|gb|ADG51449.1| CG3458 [Drosophila simulans]
gi|295867463|gb|ADG51450.1| CG3458 [Drosophila simulans]
gi|295867465|gb|ADG51451.1| CG3458 [Drosophila simulans]
gi|295867467|gb|ADG51452.1| CG3458 [Drosophila simulans]
gi|295867469|gb|ADG51453.1| CG3458 [Drosophila simulans]
gi|295867471|gb|ADG51454.1| CG3458 [Drosophila simulans]
gi|295867473|gb|ADG51455.1| CG3458 [Drosophila simulans]
gi|295867475|gb|ADG51456.1| CG3458 [Drosophila simulans]
gi|295867477|gb|ADG51457.1| CG3458 [Drosophila simulans]
gi|295867479|gb|ADG51458.1| CG3458 [Drosophila simulans]
gi|295867481|gb|ADG51459.1| CG3458 [Drosophila simulans]
gi|295867483|gb|ADG51460.1| CG3458 [Drosophila simulans]
gi|295867485|gb|ADG51461.1| CG3458 [Drosophila simulans]
gi|295867487|gb|ADG51462.1| CG3458 [Drosophila simulans]
gi|295867489|gb|ADG51463.1| CG3458 [Drosophila simulans]
gi|295867491|gb|ADG51464.1| CG3458 [Drosophila simulans]
gi|295867493|gb|ADG51465.1| CG3458 [Drosophila simulans]
gi|295867495|gb|ADG51466.1| CG3458 [Drosophila simulans]
gi|295867497|gb|ADG51467.1| CG3458 [Drosophila simulans]
gi|295867499|gb|ADG51468.1| CG3458 [Drosophila simulans]
gi|295867501|gb|ADG51469.1| CG3458 [Drosophila simulans]
gi|295867503|gb|ADG51470.1| CG3458 [Drosophila simulans]
gi|295867505|gb|ADG51471.1| CG3458 [Drosophila simulans]
gi|295867507|gb|ADG51472.1| CG3458 [Drosophila simulans]
gi|295867509|gb|ADG51473.1| CG3458 [Drosophila simulans]
gi|295867511|gb|ADG51474.1| CG3458 [Drosophila simulans]
gi|295867513|gb|ADG51475.1| CG3458 [Drosophila simulans]
Length = 226
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 141 YPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGK 200
YP++FD L L + +G+ +L + PR G DAGDHPPITPM+ +
Sbjct: 2 YPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKLGNRSDFDR 60
Query: 201 DAWRLYSYVCQHFLGTVSPDCKY 223
D WR+Y ++C+HF+GTVS D KY
Sbjct: 61 DTWRVYEFICRHFMGTVSRDLKY 83
>gi|295867419|gb|ADG51428.1| CG3458 [Drosophila simulans]
Length = 226
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 141 YPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGK 200
YP++FD L L + +G+ +L + PR G DAGDHPPITPM+ +
Sbjct: 2 YPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPITPMKLGNRSDFDR 60
Query: 201 DAWRLYSYVCQHFLGTVSPDCKY 223
D WR+Y ++C+HF+GTVS D KY
Sbjct: 61 DTWRVYEFICRHFMGTVSRDLKY 83
>gi|296241915|ref|YP_003649402.1| DNA topoisomerase I [Thermosphaera aggregans DSM 11486]
gi|296094499|gb|ADG90450.1| DNA topoisomerase I [Thermosphaera aggregans DSM 11486]
Length = 686
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 6/218 (2%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+IL G QTPTL + + F P +++ P +V++G ++ LE + A
Sbjct: 209 IILSAGRVQTPTLKYVSDIEKERNLFIPIPVYSVVPTIVKDGVKITLELINSPIRTKKDA 268
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + ++ L V E S P N +L + A+ GY P +AE+LY
Sbjct: 269 YALAERIRREGFLTVESYVEHTTSVAPPPPFNLGDLQEEAARIYGYSPSKTQSIAEQLYL 328
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSGTDAGD-- 183
ISYPRT S PS DF+ L+ ++ + V LL E GY KP G D D
Sbjct: 329 DALISYPRTNSQKLPSGLDFKSLLTKISQISNYSALVSDLLKETKGYLKPVEG-DKEDPA 387
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
HP I P L + W +Y + + FL + +
Sbjct: 388 HPAIYPT-GVRPVKLSSEQWAVYDLIVRRFLAAFAGNA 424
>gi|390938860|ref|YP_006402598.1| DNA topoisomerase I [Desulfurococcus fermentans DSM 16532]
gi|390191967|gb|AFL67023.1| DNA topoisomerase I [Desulfurococcus fermentans DSM 16532]
Length = 678
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 4/220 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+IL G QTPTL + V + ++ F P + ++ + +NG +++LE+ + A
Sbjct: 199 IILSAGRVQTPTLKYVVDKVIERNLFIPLPQYNINITVEKNGEKIRLEYTGNPVEKERDA 258
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + L V + +K P N +L K A+ G+ P +AE+LY
Sbjct: 259 RNIVEKIRGYKYLIVSKVEKKHHILHPPPPFNLGDLQKEAARLYGFSPAETQSIAEQLYL 318
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSGTDAG-DH 184
ISYPRT S P + D+R L +++ + + VE L++E G P G H
Sbjct: 319 DALISYPRTNSQKLPPTLDYRRILGNISSIKSYRNLVESLISETKGVLTPVEGEKEDPAH 378
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
P I P L + W +Y + + FL +P K +
Sbjct: 379 PAIYPT-GVVPGRLTEKQWAIYDLIVKRFLAVFAPPAKIV 417
>gi|325958291|ref|YP_004289757.1| DNA topoisomerase i [Methanobacterium sp. AL-21]
gi|325329723|gb|ADZ08785.1| DNA topoisomerase I [Methanobacterium sp. AL-21]
Length = 775
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 11/207 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE--LKLEWERQKLFDFDVA-TM 69
G QTPTL V+R +I F PE +W + L G + + + + K+FD +VA +
Sbjct: 197 GRVQTPTLAILVEREKEIQKFIPEPYWMIKADLDVPGIDELVTADHKAGKIFDKNVADEI 256
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
F ++ +++ ID+ E ++ P L + L A + G+ P+ Q+A+ LYT+G
Sbjct: 257 FADCDGKNAVVDGIDVRETVKAPPFPFDLGS--LQSEAYAVFGFSPKKTQQIAQNLYTEG 314
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG--TDAGDHPPI 187
F SYPRT S P S L L+ + + + + +L + KP G TDA HP I
Sbjct: 315 FTSYPRTSSQKLPKSIGVDKILKKLSYSGSFRNQIAKL--KKPYKPNEGKKTDAA-HPAI 371
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFL 214
P ++ L D +LY + F+
Sbjct: 372 HPTGVIPKE-LSTDDRKLYELITYRFI 397
>gi|343420183|emb|CCD19182.1| DNA topoisomerase, putative [Trypanosoma vivax Y486]
Length = 803
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 110/233 (47%), Gaps = 38/233 (16%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L +GPCQ PTLGF V+R F PE+++TL + RQ +F +
Sbjct: 153 VLNFGPCQIPTLGFVVRRSWDQRGFVPEEYFTLALH------------HRQTVFSSCPGS 200
Query: 69 MFQKLVMQDRILEVI--DISEKQESKVR-----------PCGLNTVNLLKVASSALGYGP 115
M+ ++ +LE I SEK E++V P L TV L K+A++ L
Sbjct: 201 MYDQIAA-TLVLEAIQESASEKPEAEVTEGVQRPNRRHPPVQLATVVLQKLAATHLRISS 259
Query: 116 QMAMQLAE-RLYTQGFISYPRTESTAYP-SSFDFRGTLSALANNPVWGDYVERLLAE--- 170
+ M LY +G++SYPRTE+ ++ + + T + N G YV +L +
Sbjct: 260 EKCMMWGGVSLYQEGYVSYPRTETDSFSLTDNELLETAGLQSGNSEVGQYVSAMLGDRQN 319
Query: 171 GYAKP-RSGTDAGDHPPITPMRSATEDMLGKDAWR--LYSYVCQHFLGTVSPD 220
+ +P R G D H PI P T+ M + R LY+ + +HFL VSPD
Sbjct: 320 RFRRPLRGGHDDKAHLPIYP----TKLMPSSNDPRMPLYNLIVRHFLACVSPD 368
>gi|389860366|ref|YP_006362605.1| DNA topoisomeraes I [Thermogladius cellulolyticus 1633]
gi|388525269|gb|AFK50467.1| DNA topoisomeraes I [Thermogladius cellulolyticus 1633]
Length = 685
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 3/214 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+IL G QTPTL + Q+ + P ++L + ++ + E+ A
Sbjct: 202 VILSAGRVQTPTLAYVAQQLTERNLHIPYPIFSLSLVVEKDSARVGASREKGVFETQSEA 261
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
++ + + ++V D E++ S P N +L A G+ P ++AERLY
Sbjct: 262 LRVASIIKEKKYVQVEDYVEEKVSVPPPFPFNLGDLQGEAYRIYGFSPYKTQEIAERLYL 321
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSG-TDAGDH 184
+ ISYPRT S P + ++ L+ LA NP + V +LL+E G KPR G + H
Sbjct: 322 EALISYPRTNSQKLPPTLNYGMILNQLAENPAYRYLVAQLLSETGGRLKPREGPKEDPAH 381
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
P I P L D ++Y V + FL S
Sbjct: 382 PAIYPTGVKPPHNLPPDMLKVYDLVVRRFLAVFS 415
>gi|424812730|ref|ZP_18237970.1| DNA topoisomerase I, archaeal [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756952|gb|EGQ40535.1| DNA topoisomerase I, archaeal [Candidatus Nanosalinarum sp.
J07AB56]
Length = 678
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 89/210 (42%), Gaps = 9/210 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW---ERQKLFDFDV 66
L G Q P L R I +F P+ +W ++ + L+ +W + +++ D
Sbjct: 192 LSTGRVQGPALKLLADRERDIQAFDPDDYWEIYAQISG----LEAQWRNGDDDRIWSEDE 247
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A + V + +V ++S++ P N L K ASS +G P+ +A+ LY
Sbjct: 248 AEATHETVREAGEADVSEVSKRDYKHRPPIPFNLTGLQKEASSQIGLSPKRTQSVAQNLY 307
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HP 185
QG ISYPRTES P + L L D E +L + G+ D HP
Sbjct: 308 EQGLISYPRTESQKLPPKIGYESILKQLKAQEDLEDGAETVLDKENLYTTQGSKEDDAHP 367
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLG 215
I P + GKD +LY V + FL
Sbjct: 368 AIYPTGKTPSGLDGKDR-KLYELVAKRFLA 396
>gi|302348228|ref|YP_003815866.1| DNA topoisomerase III [Acidilobus saccharovorans 345-15]
gi|302328640|gb|ADL18835.1| DNA topoisomerase III [Acidilobus saccharovorans 345-15]
Length = 679
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 10/218 (4%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELK---LEWERQKLFDF 64
L L G QTPTL ++R+++I + P +L L+ G E L W + +
Sbjct: 198 LSLSAGRVQTPTLAEAIRRWVKINTHVPIPQPSLTARLLHKGVEFTAYPLGWSVSTVKE- 256
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
A K V + +EVI +S ES P N +L K A+ G P ++AE
Sbjct: 257 --AREVAKEVKEGMYMEVISLSRASESVRPPPPFNLTDLQKEAARIYGLSPYKTQEVAED 314
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSG-TDA 181
LY ISYPRT S P + ++R L ++ P + V LL E G +PR G D
Sbjct: 315 LYLAALISYPRTNSEKLPPTLNYREVLDSIGRQPKYRGLVGDLLRETGGVLRPREGPADD 374
Query: 182 GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSP 219
HP I P L + +Y + + F+ +P
Sbjct: 375 PAHPAIYPT-GEQPTRLDRVHETVYDLIVRRFMAAFAP 411
>gi|218884347|ref|YP_002428729.1| DNA topoisomerase I [Desulfurococcus kamchatkensis 1221n]
gi|218765963|gb|ACL11362.1| DNA topoisomerase I family A [Desulfurococcus kamchatkensis 1221n]
Length = 679
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 4/220 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+IL G QTPTL + V + ++ F P + ++ + +NG +++LE+ + A
Sbjct: 200 IILSAGRVQTPTLKYVVDKVVERNLFIPLPQYNINITVEKNGEKIRLEYTGNPVEKERDA 259
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + L V + +K P N +L K A+ G+ P +AE+LY
Sbjct: 260 RDIVEKIRGYKYLIVSKVEKKHHILHPPPPFNLGDLQKEAARLYGFSPAETQSIAEQLYL 319
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSGTDAG-DH 184
ISYPRT S P + D+R L +++ + + VE L++E G P G H
Sbjct: 320 DALISYPRTNSQKLPPTLDYRRILENISSIKSYRNLVESLISETKGVLTPVEGEKEDPAH 379
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
P I P L + W +Y + + FL +P K +
Sbjct: 380 PAIYPT-GVVPGRLTEKQWAIYDLIVKRFLAVFAPPAKIV 418
>gi|304313985|ref|YP_003849132.1| DNA topoisomerase I [Methanothermobacter marburgensis str. Marburg]
gi|302587444|gb|ADL57819.1| DNA topoisomerase I [Methanothermobacter marburgensis str. Marburg]
Length = 711
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 16/216 (7%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VAT 68
L G QTPTL V+R +I F+P +W + L ++G + E R K+F V
Sbjct: 194 LSAGRVQTPTLAILVEREKEIREFEPVPYWIIQAEL-ESG--IVAESRRGKIFQRPLVDE 250
Query: 69 MFQKLVMQD---RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ ++ D R ++V D K P + +L A G+ P+ +A+ L
Sbjct: 251 VLERCSGSDASVRGVKVRDTVRKP-----PVPFDLGSLQSEAYRVFGFSPKKTQTIAQNL 305
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-H 184
YT+G+ SYPRT S P S +R L L+ +P +G ++E L KP G D H
Sbjct: 306 YTEGYTSYPRTSSQKLPESIGYRKILDRLSEDPRFGAHIEGLSEP--LKPHEGKKVDDAH 363
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
P I P D L D ++Y + F+ D
Sbjct: 364 PAIHPTGLLPSD-LSSDERKIYELIVHRFISVFGED 398
>gi|20095040|ref|NP_614887.1| topoisomerase IA [Methanopyrus kandleri AV19]
gi|19888310|gb|AAM02817.1| Topoisomerase IA [Methanopyrus kandleri AV19]
Length = 587
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 17/218 (7%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEK--FWTLHPYLVQNGYELKLEWERQKLFDFDV 66
I+ G QTPTL V+R + + ++ +W L EL+ E +K D
Sbjct: 200 IVSVGRVQTPTLKLVVERERERRKAQKKRRYYWILQAETPIG--ELRTE---EKFKDGRR 254
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A ++L + + V+++ ++ S P N L + A L P+ + LA+RLY
Sbjct: 255 A---RELASEIESIRVVEVRRERRSVRPPTPFNLTTLQRAAGKILRISPKRTLDLAQRLY 311
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALAN-NPVWGDYVERLLAEG-YAKPRSGTD-AGD 183
+G I+YPRT + YPS+FD L L N +P D + G ++P SG + G
Sbjct: 312 EEGMITYPRTATNRYPSTFDHEELLRKLRNAHP---DALRDFQRTGRRSEPVSGKEYDGA 368
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
HPPITP + + GK AWRLY + + +L T+S D
Sbjct: 369 HPPITPT-GRRKYIRGKLAWRLYDLIVRRYLATLSEDA 405
>gi|294880144|ref|XP_002768906.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
gi|239871904|gb|EER01624.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
Length = 605
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 15/148 (10%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL YGPCQ PTLGF VQR+L +F E FWT+ + E+KL W R +LFD T
Sbjct: 200 ILSYGPCQFPTLGFVVQRWLLQRNFIREPFWTIKCTVRVPMVEVKLLWGRHRLFDHLATT 259
Query: 69 MFQKLVMQDRILE-----VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+ +Q + E V +S +S+ RP L+TV K+ASS L + AM++AE
Sbjct: 260 LLYDRCLQ-HVRESGGGVVTHVSHNPKSRWRPLPLSTVEFAKLASSKLRIDSRQAMRIAE 318
Query: 124 RLYTQGFISYPR---------TESTAYP 142
Y + R TEST P
Sbjct: 319 EFYILETVQQIRAAACREALPTESTESP 346
>gi|148642777|ref|YP_001273290.1| DNA topoisomerase I, TopA [Methanobrevibacter smithii ATCC 35061]
gi|148551794|gb|ABQ86922.1| DNA topoisomerase I, TopA [Methanobrevibacter smithii ATCC 35061]
Length = 716
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 63/209 (30%), Positives = 92/209 (44%), Gaps = 10/209 (4%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
L L G QTPTL V R +I F P+ +W + L +G E++ + K+FD A
Sbjct: 194 LKLSAGRVQTPTLSILVDREKEIKKFVPKPYWLIKALL--DG-EIEADHVDGKIFDKTRA 250
Query: 68 T-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+F D ++ I S P N L A + G+ P+ +A+ LY
Sbjct: 251 EEIFSNCENSDAAVDKIKYSNSTTKP--PVPFNLGGLQSEAYNVFGFSPKKTQTIAQSLY 308
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHP 185
T G+ SYPRT S P S DF+ L+ N + ++ L A+ KP G + HP
Sbjct: 309 TAGYTSYPRTSSQKLPESLDFKSIFLQLSKNSEFRTHISALPAK--LKPNEGKKEDAAHP 366
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFL 214
I P D L KD ++Y + F+
Sbjct: 367 AIHPT-GILPDKLDKDELKIYELIVYRFI 394
>gi|312375379|gb|EFR22766.1| hypothetical protein AND_14242 [Anopheles darlingi]
Length = 752
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 41/58 (70%)
Query: 166 RLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+ +A P+ G DAGDHPPITPMR AT + L D WR+Y Y+C+HFLGTVS D KY
Sbjct: 297 KAIARDMTSPKKGNDAGDHPPITPMRLATRNELESDCWRIYDYICRHFLGTVSRDLKY 354
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCVQR+ +I +FKPE FW + + +N ELKL+W+R ++FD ++A
Sbjct: 209 LISYGPCQTPTLGFCVQRHDEIQTFKPETFWYVQVTVGENP-ELKLDWQRVRVFDKEIAC 267
Query: 69 MFQKLVMQDR 78
++ V + +
Sbjct: 268 IYLNKVKEHK 277
>gi|229495768|ref|ZP_04389496.1| DNA topoisomerase III [Porphyromonas endodontalis ATCC 35406]
gi|229317342|gb|EEN83247.1| DNA topoisomerase III [Porphyromonas endodontalis ATCC 35406]
Length = 596
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 5/211 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL R+L+ F+P+ FW L V+ G E + FD A+ +
Sbjct: 82 GRVQTPTLCMVCSRFLENKKFEPQPFWQLS-LAVKEGDESFRFSSADRWFDKTEASALYE 140
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ Q + V I K+ + P + L K A+S GY + + LA++LY + +I+
Sbjct: 141 KLKQASVATVETIVRKETRQEPPLLYDLTTLQKEANSRFGYSAEQTLSLAQKLYEKAYIT 200
Query: 133 YPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
YPRT S P + ++ L ++PVWG + R L E A G DH +
Sbjct: 201 YPRTGSRYIPEDVFAEIPALIAFLHDHPVWGVHARR-LTELNAHSVDGKKVTDHHALLIT 259
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
DM G++A +Y + L S C
Sbjct: 260 GKKPIDMFGEEAV-IYDMIAGRMLEAFSARC 289
>gi|363581226|ref|ZP_09314036.1| DNA topoisomerase III [Flavobacteriaceae bacterium HQM9]
Length = 746
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 33/228 (14%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G QTPTL V R+ +I FKP +W L Q Y R LF ++
Sbjct: 186 VLSVGRVQTPTLAMLVHRFKEIKHFKPTPYWEL-----QTTY-------RNTLFSYEEGR 233
Query: 69 MFQK-----LVMQ--DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
F++ L+ Q D+ E++ +++K+ ++ P + L ++ G+ + +++
Sbjct: 234 FFKQEDGKSLLDQITDKDFEIVKVTKKKGNEYAPKLFDLTGLQVYCNTKFGFSAEETLKI 293
Query: 122 AERLYTQGFISYPRTESTAYPSSF--DFRGTLSALAN-----NPVWGDYVERLLAEGYAK 174
A++LY Q I+YPR ++T P+ G LS L N P+ G +++ AK
Sbjct: 294 AQKLYEQKVITYPRVDTTFLPNDIYPKVSGILSNLTNYNGLIQPLLGKKIKK-----SAK 348
Query: 175 PRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ DH I P + + L + ++Y V + F+ PDCK
Sbjct: 349 VFNDKKVTDHHAIIP--TGVQIKLSYNQQQVYDIVVKRFIAVFYPDCK 394
>gi|334146789|ref|YP_004509717.1| DNA topoisomerase III [Porphyromonas gingivalis TDC60]
gi|333803944|dbj|BAK25151.1| DNA topoisomerase III [Porphyromonas gingivalis TDC60]
Length = 709
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 5/211 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL R+L+ F+P+ FW L V+ G E + FD AT +
Sbjct: 195 GRVQTPTLCMVCSRFLENKKFEPQPFWQL-SLAVKEGDESFRFSSADRWFDRTEATALYE 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ + V I K+ + P + L K A+S GY + + LA++LY + +I+
Sbjct: 254 KLRNASVATVETIVRKETKQEPPLLYDLTTLQKEANSRFGYSAEQTLSLAQKLYEKAYIT 313
Query: 133 YPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
YPRT S P + ++ L ++PVWG + R L E A G DH +
Sbjct: 314 YPRTGSRHIPEDVFAEIPALIAFLHDHPVWGVHARR-LTELNAHSVDGKKVTDHHALLIT 372
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
DM G +A +Y + L S C
Sbjct: 373 GKKPIDMFGDEAV-IYDMIAGRMLEAFSARC 402
>gi|375356596|ref|YP_005109368.1| putative transposon excision protein [Bacteroides fragilis 638R]
gi|301161277|emb|CBW20815.1| putative transposon excision protein [Bacteroides fragilis 638R]
Length = 709
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 5/211 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL R+L+ F+P+ FW L V+ G E + FD AT +
Sbjct: 195 GRVQTPTLCMVCSRFLENKKFEPQSFWQL-SLAVKEGDESFRFSSTDRWFDKAEATALYE 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ + V I K+ + P + L K A+S GY + A+ LA++LY + +I+
Sbjct: 254 KLRNASVATVETIVRKEIKQEPPLLYDLTTLQKEANSRFGYSAEQALSLAQKLYEKAYIT 313
Query: 133 YPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
YPRT S P + ++ L ++PVWG + R L E A G DH +
Sbjct: 314 YPRTGSRHIPEDVFAEIPALIAFLHDHPVWGVHARR-LTEFNAHSVDGKKVTDHHALLIT 372
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
DM G++ +Y + L S C
Sbjct: 373 GKKPIDMFGEEVV-VYDMIAGRMLEAFSARC 402
>gi|261402841|ref|YP_003247065.1| DNA topoisomerase I [Methanocaldococcus vulcanius M7]
gi|261369834|gb|ACX72583.1| DNA topoisomerase I [Methanocaldococcus vulcanius M7]
Length = 928
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 8/178 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q P L F +R L+I F P+ +W + L N LK E++K +D A +
Sbjct: 194 GRVQGPALAFLTERELEIKKFIPKPYWVIEALLKDN---LKAIHEKEKFWDEKEAKSVYE 250
Query: 73 LVMQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ ++ +V++I +K + +++P + L + A S P+ ++A+RLY + I
Sbjct: 251 KIKDEKSAKVVEI-KKTKRRIKPLPPFDLGTLQREAYSYFKISPKETQEIAQRLYERALI 309
Query: 132 SYPRTESTAYPSSFDF-RGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
SYPR+ S P + L+ + N+P++G + E++L E KP G D HP I
Sbjct: 310 SYPRSSSQKLPKDRKYLEDILNIIKNHPIYGKWAEKIL-EKNLKPVEGKKDDPAHPAI 366
>gi|311030384|ref|ZP_07708474.1| DNA topoisomerase III [Bacillus sp. m3-13]
Length = 723
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 7/217 (3%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD 65
++ + G QTPTL V+R L+I SF + FW + NG + K +W +++ D
Sbjct: 191 ISDVFSTGRVQTPTLALIVKRELEIESFVSKPFWEVLATFNMNGKKYKGKWHKEEESRLD 250
Query: 66 VATMFQKLVMQDRILEV-IDISEKQESKVRPCGL-NTVNLLKVASSALGYGPQMAMQLAE 123
A + +K+V + E I+ EK+ + +P L N +L A+S + PQ +++A+
Sbjct: 251 DANLAEKIVQFCKGKEAKIENIEKERKEFQPPFLFNLSSLQATANSLYKFSPQKTLEVAQ 310
Query: 124 RLYTQGFISYPRTEST--AYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR--SGT 179
+LY +G ISYPR++S+ + F TL L+ + DY + R +
Sbjct: 311 KLYVKGIISYPRSDSSFVTKEEAGMFPETLQKLSAFNAFKDYFPVPFSSVMNNKRVVNEK 370
Query: 180 DAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLG 215
DH I P T+ + D ++YS + + +
Sbjct: 371 KVTDHYAIIPTEQVTDPSKMSPDEEKIYSLIVKRLIA 407
>gi|156936802|ref|YP_001434598.1| DNA topoisomerase I [Ignicoccus hospitalis KIN4/I]
gi|156565786|gb|ABU81191.1| DNA topoisomerase I [Ignicoccus hospitalis KIN4/I]
Length = 657
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 13/217 (5%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+PTL V+R L + F PE ++++ E L++E + D ++
Sbjct: 190 LSAGRVQSPTLKEVVERELAVQCFVPEPYFSVSLSAKGVSLEPTLKFETKDEADHFISNC 249
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
K V+D+ E P N +L A+ G+ P +AE LY
Sbjct: 250 LGK---------VVDVIVNDERLSPPHPFNLPDLQMEAARLYGFSPSKTQSIAEELYLDA 300
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSG-TDAGDHPP 186
+ISYPRT S YP D+ L +A+ P + + L E G P +G D HP
Sbjct: 301 YISYPRTNSQKYPKDLDYANILKGIASVPQYRPLTKALFKETRGRFSPNNGPKDDPAHPA 360
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
I P ++ L D ++Y + + F+ T++ + Y
Sbjct: 361 IYPTGKPPKN-LSPDHMKVYDLIVRRFMATLASESVY 396
>gi|188993948|ref|YP_001928200.1| DNA topoisomerase I [Porphyromonas gingivalis ATCC 33277]
gi|188593628|dbj|BAG32603.1| DNA topoisomerase I [Porphyromonas gingivalis ATCC 33277]
Length = 709
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 90/211 (42%), Gaps = 5/211 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL R+L+ F+P+ FW L V+ G E + FD AT
Sbjct: 195 GRVQTPTLCMVCSRFLEHKKFEPQPFWQLS-LAVKEGDESFRFSSADRWFDKTEATALYD 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ Q V I K+ + P + L K A+S GY + + LA+RLY + +I+
Sbjct: 254 KLKQAPYATVETIVRKEARQEPPLLYDLTTLQKEANSRFGYSAEQTLSLAQRLYEKAYIT 313
Query: 133 YPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
YPRT S P + ++ L ++PVWG + R L E A G DH +
Sbjct: 314 YPRTGSRYVPEDVFAEIPAMIAFLHDHPVWGVHARR-LTELNAHSVDGKKVTDHHALLIT 372
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
D+ G +A +Y + L S C
Sbjct: 373 GKKPIDVFGDEAV-IYDMIAGRMLEAFSARC 402
>gi|15669848|ref|NP_248662.1| DNA topoisomerase I [Methanocaldococcus jannaschii DSM 2661]
gi|14423964|sp|Q59046.1|TOP1_METJA RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|1592234|gb|AAB99673.1| DNA topoisomerase I (topA) {Bacillus subtilis [Methanocaldococcus
jannaschii DSM 2661]
Length = 761
Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 6/177 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q P L F +R L+I F P+ +W + L N LK E++K ++ A +
Sbjct: 198 GRVQGPALAFLTERELEIKKFIPKPYWVIEALLKDN---LKAIHEKEKFWNEKEAKNVYE 254
Query: 73 LVMQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ ++ +V++I +K + K++P + L + A S P+ ++A++LY I
Sbjct: 255 KIKDEKSAKVVEI-KKTKRKLKPLPPFDLGTLQREAYSYFKISPKETQEIAQKLYENALI 313
Query: 132 SYPRTESTAYPSSFDF-RGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
SYPRT S P + L+ + N+PV+G + ER+L E + HP I
Sbjct: 314 SYPRTSSQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGKKEDPAHPAI 370
>gi|445113264|ref|ZP_21377483.1| DNA topoisomerase III [Prevotella nigrescens F0103]
gi|444841171|gb|ELX68189.1| DNA topoisomerase III [Prevotella nigrescens F0103]
Length = 709
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 5/211 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL R+L+ F+P+ FW L + ++ + + FD AT +
Sbjct: 195 GRVQTPTLCMVCSRFLENKKFEPQPFWQLSLAVKESDESFRFS-SADRWFDKTEATALYE 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ Q V I K+ + P + L K A+S GY + + LA++LY + +I+
Sbjct: 254 KLKQAPYATVETIVRKETKQEPPLLYDLTTLQKEANSRYGYTAEQTLSLAQKLYEKAYIT 313
Query: 133 YPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
YPRT S P + ++ L ++PVWG + R L E A G DH +
Sbjct: 314 YPRTGSRHIPEDVFAEIPALIAFLHDHPVWGVHARR-LTEFNAHSVDGKKVTDHHALLIT 372
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
DM G +A +Y + L S C
Sbjct: 373 GKKPIDMFGDEAV-IYDMIVGRMLEAFSARC 402
>gi|402495207|ref|ZP_10841939.1| DNA topoisomerase III [Aquimarina agarilytica ZC1]
Length = 751
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 29/226 (12%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G QTPTL VQRY +I +FKP +W L Q Y R LF ++
Sbjct: 186 VLSVGRVQTPTLAMLVQRYKEIENFKPTPYWEL-----QTKY-------RDTLFSYEEGR 233
Query: 69 MFQK---LVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
F+K ++ D++ E++ I++K+ ++ P + L ++ G+ +++
Sbjct: 234 FFKKEEGQILADKVQAHDFEIVSITKKKGNEYAPKLFDLTGLQVYCNTKFGFSADETLKI 293
Query: 122 AERLYTQGFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPR--- 176
++LY Q ++YPR ++T P+ G L L N + ++++ LL + K
Sbjct: 294 VQKLYEQKVVTYPRVDTTFLPNDIYPKVPGILEKLTN---YSEFIQPLLGKKIKKSARVF 350
Query: 177 SGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ DH I P + + L + ++Y + + F+ DCK
Sbjct: 351 NDKKVTDHHAIIP--TGIQMNLQYNQQQVYDIIVKRFIAVFYEDCK 394
>gi|423116335|ref|ZP_17104026.1| DNA topoisomerase III [Klebsiella oxytoca 10-5245]
gi|376378517|gb|EHS91276.1| DNA topoisomerase III [Klebsiella oxytoca 10-5245]
Length = 669
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 13/227 (5%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------E 57
V+ +L G QTPTL V R +ITSF P+ +W +H + + G + W E
Sbjct: 184 VSEVLSVGRVQTPTLAMVVNRDNEITSFVPKPWWQVHALIEKEGVRFRAGWVPVEQYCDE 243
Query: 58 RQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQM 117
++ + A +L Q V+++++K+E P + L +V S G G
Sbjct: 244 EKRCINPQAARAVGQLCQQQGRATVLEVTQKREKTAAPLCFDLGTLQQVCSRKFGMGAND 303
Query: 118 AMQLAERLY-TQGFISYPRTESTAYPSSF--DFRGTLSALA-NNPVWGDYVERLLAEGYA 173
+ +A+ LY T +YPRT+ P+S + L+A+A ++P + +L + +
Sbjct: 304 VLAIAQSLYETHKATTYPRTDCGFLPTSMQQEIPDVLAAVAKSDPAVAPVLNQLDRKFVS 363
Query: 174 KPRSGTDAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
+ + H I P R A + L D ++Y + QH+ P
Sbjct: 364 RVWNDKKITAHHAIIPTRQAFDLSRLSADELKVYQLIRQHYFAQFLP 410
>gi|15897795|ref|NP_342400.1| DNA topoisomerase I [Sulfolobus solfataricus P2]
gi|284175598|ref|ZP_06389567.1| DNA topoisomerase I [Sulfolobus solfataricus 98/2]
gi|384434344|ref|YP_005643702.1| DNA topoisomerase I [Sulfolobus solfataricus 98/2]
gi|13814088|gb|AAK41190.1| DNA topoisomerase I family A (topA) [Sulfolobus solfataricus P2]
gi|261602498|gb|ACX92101.1| DNA topoisomerase I [Sulfolobus solfataricus 98/2]
Length = 668
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 5/217 (2%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+IL G Q+PTL V ++ F P +T+ + Y L ++ ++ +
Sbjct: 195 VILSAGRVQSPTLVQVVNSEIERNLFIPLPKFTVSIIVKIKDYSLNIKVNKEFEKITEAK 254
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
KL+ ++ ++V+++ + RP N +L A G P ++AE LY
Sbjct: 255 EFLNKLI--NKTVKVVEVENRVRLLERPSPFNLTDLQIEAGRIYGISPYNVERIAEDLYL 312
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWG--DYVERLLAEGYAKPRSGTDAGDHP 185
G ISYPRT S PS+ + L N+ D V ++ Y + D HP
Sbjct: 313 DGLISYPRTNSQKIPSTISIYNIIKGLENSSYRKLVDLVRKITGGKYVVKQGIKDDPAHP 372
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
I P A ++ L +++Y + + FLG+VS D K
Sbjct: 373 AIHPTGEAPKN-LPNSKFKIYDLIARRFLGSVSADAK 408
>gi|305663582|ref|YP_003859870.1| DNA topoisomerase I [Ignisphaera aggregans DSM 17230]
gi|304378151|gb|ADM27990.1| DNA topoisomerase I [Ignisphaera aggregans DSM 17230]
Length = 672
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 92/213 (43%), Gaps = 3/213 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
IL G Q+PTL + V LQ + P + + + KL A
Sbjct: 192 ILSAGRVQSPTLSYVVNIDLQRKTHVPVPYAYPSIKIFIDNKIFKLIPIDSPFNSLSDAK 251
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + +D V+DI + E P N +L A G+ P +LAE LY +
Sbjct: 252 EYLENIKRDPRATVLDIIVRDERIEPPHPFNLPDLQSEAHRIYGFTPYKTQKLAEDLYLE 311
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSG-TDAGDHP 185
ISYPRT S P + + R L L+ N V+ V+ LLAE G +P +G + HP
Sbjct: 312 ALISYPRTNSQKLPPTLNNREILEKLSQNIVYRTLVKTLLAETRGILRPNNGPKEDPAHP 371
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFLGTVS 218
I P T L KD +LY + + +L T +
Sbjct: 372 AIYPTGEGTLKGLSKDHIKLYDLIVRRYLATFA 404
>gi|387132722|ref|YP_006298694.1| DNA topoisomerase [Prevotella intermedia 17]
gi|386375570|gb|AFJ09626.1| DNA topoisomerase [Prevotella intermedia 17]
Length = 709
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 90/211 (42%), Gaps = 5/211 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL R+L+ F+P+ FW L V+ G E + FD AT
Sbjct: 195 GRVQTPTLCMVCSRFLENKKFEPQPFWQLS-LAVKEGDESFRFSSADRWFDKAEATALYD 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ Q V I K+ + P + L K A+S GY + + LA++LY + +I+
Sbjct: 254 KLKQAPYATVETIVRKETKQEPPLLYDLTTLQKEANSRFGYSAEQTLSLAQKLYEKAYIT 313
Query: 133 YPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
YPRT S P + ++ L ++PVWG + R L E A G DH +
Sbjct: 314 YPRTGSRYIPEDVFAEIPALIAFLHDHPVWGVHARR-LTELNAHSVDGKKVTDHHALLIT 372
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
DM G++ +Y + L S C
Sbjct: 373 GKKPIDMFGEEVV-IYDMIVGRMLEAFSARC 402
>gi|403309311|ref|XP_003945052.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Saimiri boliviensis
boliviensis]
Length = 586
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 300 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 359
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRP 95
M + ++ +V S K+++K RP
Sbjct: 360 QMSLNMTKLEKEAQVEATSRKEKAKQRP 387
>gi|225685385|ref|YP_002729787.1| DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing
enzyme) (Untwisting enzyme) (Swivelase) [Persephonella
marina EX-H1]
gi|225646805|gb|ACO04990.1| DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing
enzyme) (Untwisting enzyme) (Swivelase) [Persephonella
marina EX-H1]
Length = 834
Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG--YELKLEWERQKLFD--FDVAT 68
G QTP L V+R L+I +FKP+ +W L ++ ++ KL E+ +F+ +
Sbjct: 187 GRVQTPVLKLIVERDLEIKNFKPKPYWQLEAVFEKDSQKFKAKLLNEKDTIFEDKNKIWE 246
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+F+ L +D+ + V +I +KQ K P + L A+ G+ Q + LA+ LY
Sbjct: 247 IFKALKDKDKAV-VKEIEKKQHKKYAPPLFSITTLQMTANKRFGFTAQKTLMLAQDLYEA 305
Query: 129 GFISYPRTESTAY---PSSFDF-RGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDH 184
+ISYPRTE+ PS+ D + L L + +E + G + + DH
Sbjct: 306 KYISYPRTEAQHLDENPSTKDLVKNILKKLGEEQL----IENVDKVG-KRVFDSSKLTDH 360
Query: 185 PPITPMRSATEDM-----LGKDAWRLYSYVCQHFLGTVSPDCKY 223
I PM TE+ L +D ++Y + FL P +Y
Sbjct: 361 YAIIPMNLLTEEKAKKEGLNQDHLKIYELIKNRFLAVFMPPYEY 404
>gi|111120268|gb|ABH06319.1| topoisomerase (DNA) III beta [Bos taurus]
Length = 295
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + V L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVDVDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESK 92
MF + ++ +V S K+++K
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAK 295
>gi|429217395|ref|YP_007175385.1| DNA topoisomerase I, archaeal [Caldisphaera lagunensis DSM 15908]
gi|429133924|gb|AFZ70936.1| DNA topoisomerase I, archaeal [Caldisphaera lagunensis DSM 15908]
Length = 689
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 17/223 (7%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKL------EWERQK 60
++ L G Q+PTL ++R+++I + P+ F ++ L+ Y+ K W +
Sbjct: 202 SISLSAGRVQSPTLAEAIRRWIEINLYLPKPFLSI---LILGEYDGKRFLITPKNWSPKT 258
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
+ + A +K + ++ +L V D E +E P N +L K +S G+ P
Sbjct: 259 ISE---AKEIKKFLEKNPVLNVDDYQESKEKVPPPPAFNLGDLQKESSRIYGFSPFKTQS 315
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSG 178
+AE LY + ISYPRT S P + +++ ++ L+ + + ++ LL E G P G
Sbjct: 316 IAEELYLETLISYPRTNSQKLPKTINYKQIINDLSKQS-YKNLIDTLLKETQGKLNPVQG 374
Query: 179 -TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
D HP I P + + G D ++Y + + FL S +
Sbjct: 375 REDDPAHPAIYPTGEVPKKIYG-DYLKIYDLIVRRFLSAFSKE 416
>gi|138895193|ref|YP_001125646.1| DNA topoisomerase III [Geobacillus thermodenitrificans NG80-2]
gi|196248223|ref|ZP_03146924.1| DNA topoisomerase III [Geobacillus sp. G11MC16]
gi|134266706|gb|ABO66901.1| DNA topoisomerase III [Geobacillus thermodenitrificans NG80-2]
gi|196211948|gb|EDY06706.1| DNA topoisomerase III [Geobacillus sp. G11MC16]
Length = 696
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 14/223 (6%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWER---QKLFDFDV 66
L G QTPTL ++R +I SF P +WT+H + + WER ++LFD D
Sbjct: 185 LSAGRVQTPTLAMIIEREREIQSFVPVPYWTIHARIGS----VTAVWERHGGKRLFDKDE 240
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A ++ + V + K++S+ P + L + A+ G+ + + + +RLY
Sbjct: 241 ANELM-TRLKGQPARVTSVKRKRKSEPVPLPYDLTELQREANKRFGFSAKKTLSVLQRLY 299
Query: 127 TQ-GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRS----GTDA 181
Q ++YPRT+S PS T LA P + D + LL + K +
Sbjct: 300 EQHKLVTYPRTDSRYLPSDMKATMTDRLLAMKPGYEDVISSLLTKKNVKAANRVFQDDKV 359
Query: 182 GDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
DH I P + L D +LY + + FL P +Y
Sbjct: 360 TDHHAIIPTDERLDLAKLSVDERKLYDMIARRFLALFYPPYEY 402
>gi|329295498|ref|ZP_08252834.1| DNA topoisomerase III [Plautia stali symbiont]
Length = 688
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 13/227 (5%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------E 57
V+ +L G QTPTL V R +ITSF P+ +W +H + + G + W E
Sbjct: 184 VSEVLSVGRVQTPTLAMVVNRDNEITSFVPKPWWQVHALIEKEGVRFRAGWVPVEQYCDE 243
Query: 58 RQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQM 117
++ + +L Q +V+++++K+E P + L +V S G G
Sbjct: 244 EKRCINPQADRAVGQLCQQQGRAKVLEVTQKREKTAAPLCFDLGTLQQVCSRKFGMGAND 303
Query: 118 AMQLAERLY-TQGFISYPRTESTAYPSSF--DFRGTLSALA-NNPVWGDYVERLLAEGYA 173
+ +A+ LY T +YPRT+ P+S + L+A+A ++P + +L + +
Sbjct: 304 VLAIAQSLYETHKATTYPRTDCGFLPTSMQQEIPDVLAAVAKSDPAVAPVLNQLDRQFVS 363
Query: 174 KPRSGTDAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
+ + H I P R A + L D ++Y + QH+ P
Sbjct: 364 RVWNDKKITAHHAIIPTRQAFDLSRLSADELKVYHLIRQHYFAQFLP 410
>gi|357060452|ref|ZP_09121221.1| hypothetical protein HMPREF9332_00778 [Alloprevotella rava F0323]
gi|355376005|gb|EHG23268.1| hypothetical protein HMPREF9332_00778 [Alloprevotella rava F0323]
Length = 709
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 89/211 (42%), Gaps = 5/211 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL R+L+ F+P+ FW L V+ G E + FD AT
Sbjct: 195 GRVQTPTLCMVCSRFLEHKKFEPQPFWQL-SLAVKEGDESFRFSSADRWFDKTEATALYD 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ Q V I K+ + P + L K A+ GY + + LA+RLY + +I+
Sbjct: 254 KLKQAPYATVETIVRKETRQEPPLLYDLTTLQKEANGRFGYSAEQTLSLAQRLYEKAYIT 313
Query: 133 YPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
YPRT S P + ++ L ++ VWG + R L E A GT DH +
Sbjct: 314 YPRTGSRHIPEDVFAEIPALIAFLHDHSVWGVHAHR-LTELNAHSVDGTKVTDHHALLIT 372
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
DM G++ +Y + L S C
Sbjct: 373 GKKPIDMFGEEVV-IYDMIVGRMLEAFSARC 402
>gi|255514071|gb|EET90334.1| DNA topoisomerase I [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 727
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 7/207 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q P LG +R +I SFKPE +W + Y E + R +F A
Sbjct: 198 LSIGRVQGPALGLLAKREKEIASFKPEPYWNVLAY----SGEFEFINSRGNIFAKQEAES 253
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
R V+ + E RP + +L AS G+ P + +A+ LY +
Sbjct: 254 AFSAANSGRDNAVVSEATSAEQLRRPYPPFDLTSLQLEASRVFGFDPSATLAMAQSLYER 313
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
FISYPRT S P + ++ L NP + + ++G P G + HP I
Sbjct: 314 SFISYPRTSSQKLPRTLGLPRIIADLGKNPAYSTIAAEIASKGRFTPAEGPKEDEAHPAI 373
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFL 214
P + + G + +LY + + FL
Sbjct: 374 FPTGVTPKGITGSEE-KLYDLIARRFL 399
>gi|317128730|ref|YP_004095012.1| DNA topoisomerase III [Bacillus cellulosilyticus DSM 2522]
gi|315473678|gb|ADU30281.1| DNA topoisomerase III [Bacillus cellulosilyticus DSM 2522]
Length = 723
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 4/133 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ---KLFDFD 65
I G QTPTL VQR +I +FK E+FW + N + K +W ++ +L + +
Sbjct: 194 IFSIGRVQTPTLALIVQREKEIETFKQEEFWEVVATFHMNNNQYKGKWHKENDSRLKEKE 253
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+A ++ + + I +K++ P LN NL +A+ Y PQ + +A++L
Sbjct: 254 LAEKIRRFCVHKEA-TIQSIEKKRKDFKPPFLLNLSNLQALANKRFKYSPQKTLDIAQKL 312
Query: 126 YTQGFISYPRTES 138
YT+G ISYPR++S
Sbjct: 313 YTKGIISYPRSDS 325
>gi|340349956|ref|ZP_08672959.1| DNA topoisomerase TopB [Prevotella nigrescens ATCC 33563]
gi|339610159|gb|EGQ15020.1| DNA topoisomerase TopB [Prevotella nigrescens ATCC 33563]
Length = 709
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 5/211 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL R+L+ F+P+ FW L V+ G E + FD AT
Sbjct: 195 GRVQTPTLCMVCSRFLENKKFEPQPFWQLS-LAVKEGDESFRFSSADRWFDKAEATALYD 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ Q V I K+ + P + L K A+S GY + + LA++LY + +I+
Sbjct: 254 KLKQAPYATVETIVRKETKQEPPLLYDLTTLQKEANSRFGYSAEQTLSLAQKLYEKAYIT 313
Query: 133 YPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
YPRT S P + ++ L ++PVWG + R L E A G DH +
Sbjct: 314 YPRTGSRYIPEDVFAEIPALIAFLHDHPVWGVHARR-LTELNAHSVDGKKVTDHHALLIT 372
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
D+ G++ +Y + L S C
Sbjct: 373 GKKPIDIFGEEVV-IYDMIVGRMLEAFSARC 402
>gi|323702251|ref|ZP_08113917.1| DNA topoisomerase III [Desulfotomaculum nigrificans DSM 574]
gi|323532741|gb|EGB22614.1| DNA topoisomerase III [Desulfotomaculum nigrificans DSM 574]
Length = 798
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 7/222 (3%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW---ERQKLFDFD 65
+L G QTPTL V R +I +F + +W ++ NG + +W E +L D
Sbjct: 185 VLSVGRVQTPTLNLVVSREREIQNFVSKPYWEVYAGFQVNGGTYRGKWFTKETCRLNDSQ 244
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A V ++ + ++I + +K+ + P N +L K A+ GY Q + +A+ L
Sbjct: 245 TARALADKVAREGVGKIITLVQKEAKEQPPFLFNLNDLQKEANRRYGYTAQQTLDIAQAL 304
Query: 126 YTQ-GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
Y + ++YPRT+S ++ G LSAL N P + ++ + +
Sbjct: 305 YEKHKLLTYPRTDSRHLSTAMVATLAGRLSALQNLPGYKGFIPAEVPVLNKRYVDDAKIT 364
Query: 183 DHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
DH I P R+ E L ++Y V + FL P+ +Y
Sbjct: 365 DHHAIVPTDRNPAEVQLNDQEEKIYDLVVRRFLSIFYPEARY 406
>gi|320101228|ref|YP_004176820.1| DNA topoisomerase I [Desulfurococcus mucosus DSM 2162]
gi|319753580|gb|ADV65338.1| DNA topoisomerase I [Desulfurococcus mucosus DSM 2162]
Length = 691
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 4/212 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
++L G QTPTL + V++ ++ F P + + +NG E+ LE+ + A
Sbjct: 207 IVLSAGRVQTPTLKYVVEKTVERNLFIPLPQYRVTVTAERNGEEVVLEYAGNPVEKHGEA 266
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ V + L V ++ K P N +L + A+ G+ P +AE+LY
Sbjct: 267 RSIVERVRRQGYLIVEEVEGKTYVLKPPPPFNLGDLQEEAARIYGFSPAKTQAIAEQLYL 326
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSGTDAG-DH 184
ISYPRT S P + ++RG L LA+ + V LL+E G KP G H
Sbjct: 327 DALISYPRTNSQKLPPTLNYRGILDNLASIGKYSGLVASLLSETRGVLKPVEGEKEDPAH 386
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGT 216
P I P L + W +Y + + FL
Sbjct: 387 PAIYPT-GMKPGGLTDEQWAVYDLIVRRFLAV 417
>gi|403237991|ref|ZP_10916577.1| DNA topoisomerase III [Bacillus sp. 10403023]
Length = 726
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD 65
++ + G QTPTL V+R +I +FK E FW + NG + + +W + +
Sbjct: 191 ISDVFSAGRVQTPTLALIVKREKEIANFKSEAFWEVFASFQINGKQFEGKWMKDQESRLS 250
Query: 66 VATMFQKLVM--QDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
M +K+ QD+ E+ ++ +++ P N +L A+ A + P+ + +A+
Sbjct: 251 SKEMAEKIAAFCQDKPAEIAEVETEKKEYQPPLLFNLSSLQATANKAFKFSPKKTLDVAQ 310
Query: 124 RLYTQGFISYPRTEST 139
LYT+G ISYPR++S+
Sbjct: 311 SLYTKGIISYPRSDSS 326
>gi|333988062|ref|YP_004520669.1| DNA topoisomerase I [Methanobacterium sp. SWAN-1]
gi|333826206|gb|AEG18868.1| DNA topoisomerase I [Methanobacterium sp. SWAN-1]
Length = 787
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 9/209 (4%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQK---LFDFDV 66
L G QTPTL V R +I F P +W + L G + + + +K L D
Sbjct: 194 LSAGRVQTPTLSILVDREKEIKEFIPVPYWLIKADLDVTGVKEGITADHKKGKILEKKDA 253
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ + +D ++ +++ ++ +K P + +L A G+ P+ Q+A+ LY
Sbjct: 254 DAILVECKGKDAVITEVNL--RKTTKTPPFPFDLGSLQSEAYGVFGFSPRKTQQIAQNLY 311
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HP 185
T+G+ SYPRT S P S + L L+ + +G++V +L + KP G + HP
Sbjct: 312 TEGYTSYPRTSSQKLPKSIGYDKILKKLSYSSAFGNHVAQL--KKPYKPNEGKKTDEAHP 369
Query: 186 PITPMRSATEDMLGKDAWRLYSYVCQHFL 214
I P ++ L D +LY + F+
Sbjct: 370 AIHPTGVLPKE-LSTDYRKLYELIVYRFI 397
>gi|333910658|ref|YP_004484391.1| DNA topoisomerase I [Methanotorris igneus Kol 5]
gi|333751247|gb|AEF96326.1| DNA topoisomerase I [Methanotorris igneus Kol 5]
Length = 1297
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q P L F V+R L+I F P+ +W + L + +L E++K +D A K
Sbjct: 194 GRVQGPALAFLVERELEIKRFVPKPYWVISALLDE---KLNATHEKEKFWDEKEANQVYK 250
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ + V+++ ++++ + L + A + P+ ++A+RLY + S
Sbjct: 251 KIKDVKEGIVVEVKKRKKKIKPNPPFDLGTLQREAYRIYKFSPKKTQEIAQRLYEKSLCS 310
Query: 133 YPRTESTAYPSSFDF-RGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
YPRT S P + LS + N+P++G Y ER+L E + HP I
Sbjct: 311 YPRTSSQKLPKDKKYLEDVLSIIKNHPIYGKYAERILKENLKPIEGKKEDPAHPAI 366
>gi|288925576|ref|ZP_06419508.1| DNA topoisomerase III [Prevotella buccae D17]
gi|288337514|gb|EFC75868.1| DNA topoisomerase III [Prevotella buccae D17]
Length = 709
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 89/211 (42%), Gaps = 5/211 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL R+L+ F+P+ FW L V+ G E + FD AT
Sbjct: 195 GRVQTPTLCMVCSRFLENKKFEPQPFWQL-SLTVKEGDESFRFSSADRWFDKTEATALYD 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ Q V I K+ + P + L K A+S GY + + LA++LY + +I+
Sbjct: 254 KLKQAPYATVETIVRKETRQEPPLLYDLTTLQKEANSRFGYSAEQTLSLAQKLYEKAYIT 313
Query: 133 YPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
YPRT S P + ++ L ++ VWG + R L E A G DH +
Sbjct: 314 YPRTGSRHIPEDVFAEIPALIAFLHDHSVWGLHARR-LTEFNAHSVDGKKVTDHHALLIT 372
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
D+ G +A +Y + L S C
Sbjct: 373 GKKPIDVFGDEAV-IYDMIAGRMLEAFSAHC 402
>gi|41614841|ref|NP_963339.1| hypothetical protein NEQ045 [Nanoarchaeum equitans Kin4-M]
gi|40068565|gb|AAR38900.1| NEQ045 [Nanoarchaeum equitans Kin4-M]
Length = 408
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 17/217 (7%)
Query: 2 FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKL 61
+V VTL + G Q PTL +R +I++F PE+++ + + Y+ + +KL
Sbjct: 173 YVKDVTLSI--GRVQGPTLRLVYEREKEISNFIPEEYYRV--VFIHKNYKF---YYIEKL 225
Query: 62 FDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+ + A K + + + L+++ + E++ P N + + A P+ + +
Sbjct: 226 KNLERA----KEIAKCKELKIVRVKEEKVYLPPPHPYNLSAIQQDAYKFYKISPKDTLLI 281
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG--DYVERLLAEGYAKPRSGT 179
++LYT G+ISYPRT S P S D+R L L +WG Y+ LL + KP +G
Sbjct: 282 LQKLYTNGYISYPRTSSNILPESLDYRYILEKLK---LWGYSYYISYLLKKPILKPNNGN 338
Query: 180 DAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGT 216
HP I P + + K++ +Y + ++F+ T
Sbjct: 339 IEDAHPAIYPTGIIPKGLSKKESL-IYDLIVRNFIAT 374
>gi|170742332|ref|YP_001770987.1| DNA topoisomerase type IA central domain-containing protein
[Methylobacterium sp. 4-46]
gi|168196606|gb|ACA18553.1| DNA topoisomerase type IA central domain protein [Methylobacterium
sp. 4-46]
Length = 809
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 66/222 (29%), Positives = 93/222 (41%), Gaps = 19/222 (8%)
Query: 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKLEWERQKLFDFDVATMF 70
+G QTPTL +I F P +F+ + P +G EL L W K F
Sbjct: 186 FGGVQTPTLALLADLERRIRDFVPREFFRIALPVATVSGAELTL-WHAPKERIFAREEAE 244
Query: 71 QKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ ++E+ + P + L + + + G+ PQ LA+ LY +GF
Sbjct: 245 AIAAAARGWAGPLAVAERDVRRPPPRLFSKDTLARRCAKSFGFDPQRTASLAQDLYDRGF 304
Query: 131 ISYPRTESTAYP--SSFDFRGTLSALANN--------PVWGDYVERLLAEG-YAKPRSGT 179
+SYPRTES P S D L+AL + P G V R G Y K
Sbjct: 305 LSYPRTESEHLPESQSGDAPAVLAALGASLPDLAGLVPAPGAVVLRRGPRGHYVK----- 359
Query: 180 DAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPD 220
D G+H I P+R +G +AWRL+ V + FL PD
Sbjct: 360 DPGEHHAIVPLRKVPRPGEVGPEAWRLWELVAKAFLAAHLPD 401
>gi|15921479|ref|NP_377148.1| DNA topoisomerase I [Sulfolobus tokodaii str. 7]
gi|15622265|dbj|BAB66257.1| DNA topoisomerase III [Sulfolobus tokodaii str. 7]
Length = 664
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 3/210 (1%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q+PTL V+ + + P + + + L R + + K
Sbjct: 198 GRVQSPTLIHVVENEIARELYIPLPVYRVRVKIKIGNETFSLSLNRTFEYKEEAQEFANK 257
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ +++ + I EK + RP N +L A LGY P +LAE LY G IS
Sbjct: 258 IKKSRAVVDEVRIEEKPLT--RPSPFNLGDLQAEAGRILGYSPYYVERLAEELYLDGLIS 315
Query: 133 YPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPITPMR 191
YPRT S P S D + ++ L N + R + +G R G+ D HP I P
Sbjct: 316 YPRTNSQKIPPSVDIKSIVNGLEANFKNLVGLVRNITKGEYIVRQGSKDDPAHPAIYPTG 375
Query: 192 SATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ + LG ++L+ + + FL ++S D
Sbjct: 376 NRITEKLGIKQYKLFELITRRFLASISRDA 405
>gi|373460406|ref|ZP_09552159.1| DNA topoisomerase III [Prevotella maculosa OT 289]
gi|371956053|gb|EHO73849.1| DNA topoisomerase III [Prevotella maculosa OT 289]
Length = 709
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 88/211 (41%), Gaps = 5/211 (2%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL R+L+ F+P+ FW L V+ G E + FD AT
Sbjct: 195 GRVQTPTLCMVCSRFLENKKFEPQPFWQLS-LAVKEGDESFRFSSADRWFDKAEATALYD 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ Q V I K+ + P + L K A+S GY + + LA++LY + +I+
Sbjct: 254 KLKQAPYATVETIVRKETKQEPPLLYDLTTLQKEANSRFGYSAEQTLSLAQKLYEKAYIT 313
Query: 133 YPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPM 190
YPRT S P + ++ L ++PVWG R L E A DH +
Sbjct: 314 YPRTGSRYIPEDVFAEIPALIAFLHDHPVWGVQARR-LTELNAHSVDSKKVTDHHALLIT 372
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
DM G++ +Y + L S C
Sbjct: 373 GKKPIDMFGEEV-AIYDMIVGRMLEAFSARC 402
>gi|256810677|ref|YP_003128046.1| DNA topoisomerase I [Methanocaldococcus fervens AG86]
gi|256793877|gb|ACV24546.1| DNA topoisomerase I [Methanocaldococcus fervens AG86]
Length = 759
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 8/178 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q P L F +R L+I F P+ +W + L N LK E++K +D A +
Sbjct: 194 GRVQGPALAFLTERELEIKKFVPKPYWVIEALLKDN---LKAIHEKEKFWDEKEAKNIYE 250
Query: 73 LVMQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ ++ +V+++ +K + K++P + L + A S P+ ++A+ LY + I
Sbjct: 251 KIKDEKTAKVLEV-KKTKRKIKPLPPFDLGTLQREAYSYFKISPKETQEIAQNLYEKALI 309
Query: 132 SYPRTESTAYPSSFDF-RGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPI 187
SYPRT S P + L + +P++G +V R+L + KP G + HP I
Sbjct: 310 SYPRTSSQKLPKDRKYLEDILKIIKEHPIYGKWVGRILKDNL-KPVGGKKEDPAHPAI 366
>gi|393201313|ref|YP_006463155.1| topoisomerase IA [Solibacillus silvestris StLB046]
gi|327440644|dbj|BAK17009.1| topoisomerase IA [Solibacillus silvestris StLB046]
Length = 724
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ---KLFDFDVATM 69
G QTPTL V+R +I +FKPE FW + NG LK +W + +L + A
Sbjct: 198 GRVQTPTLALIVKREHEIANFKPEPFWEVEAEFNFNGKVLKAKWHKNSVTRLLEERQAIA 257
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ + E+ +I ++ + P N L A+ A + PQM + + ++LY +G
Sbjct: 258 AANFCINKNV-EIKNIKKETKEYAPPLLFNLSALQATANRAFKFSPQMTLDILQKLYLKG 316
Query: 130 FISYPRTES 138
+SYPR++S
Sbjct: 317 VVSYPRSDS 325
>gi|150398914|ref|YP_001322681.1| DNA topoisomerase I [Methanococcus vannielii SB]
gi|150011617|gb|ABR54069.1| DNA topoisomerase I [Methanococcus vannielii SB]
Length = 817
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 7/212 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q P L F V + ++I +F P +W L L N LK E +K D A +
Sbjct: 194 GRVQGPALAFLVDKEIEIKNFIPTPYWVLEAVLDNN---LKALHELEKFTDEKRAKEAYE 250
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V ++ V +I + +S + L + A + + P+ ++A++LY +G+ S
Sbjct: 251 KVKNEKEALVTEIKKTLKSIPPNVPFDLGALQREAHNVFRFSPKKTQEVAQKLYEKGYCS 310
Query: 133 YPRTESTAYPSSFDFRG-TLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPITPM 190
YPRT S P + L L+ N + Y+E +L+EG KP G D HP I +
Sbjct: 311 YPRTSSQKLPDDKAYMDEVLKNLSKNKEYSKYIELILSEG-RKPVDGKKDDPAHPAIHAV 369
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
E+ L D +LY + + + D K
Sbjct: 370 DVPKEN-LPDDELKLYELIARRTIALYLDDAK 400
>gi|14601630|ref|NP_148170.1| DNA topoisomerase I [Aeropyrum pernix K1]
gi|14423993|sp|Q9YB01.1|TOP1_AERPE RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|5105484|dbj|BAA80797.1| DNA topoisomerase I [Aeropyrum pernix K1]
Length = 673
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 4/217 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+IL G Q+PTL +R+ +I P+ + + G K + A
Sbjct: 186 VILSAGRVQSPTLVEAYRRWREINLHVPKASVAVKITAEKGGGVFDARPHGWKPQSLETA 245
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + ++ L V ++ ++ P N +L K A+ LG P +AE LY
Sbjct: 246 RSIKSELRKNPWLAVEEVRSERSILRPPPAFNLGDLQKEANRILGLPPLRTQSIAEELYL 305
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSGT-DAGDH 184
+ ISYPRT S P S ++R L LA+ P+ G LL E G +P G+ D H
Sbjct: 306 EALISYPRTNSQKLPPSINYRAILDKLAHGPL-GREARELLKETGGVLRPVQGSKDDPAH 364
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P I P L K+ +Y + + FL S +
Sbjct: 365 PAIHPTGEKPSQRLSKEHMAVYELIVRRFLAAFSREA 401
>gi|406667948|ref|ZP_11075698.1| DNA topoisomerase 3 [Bacillus isronensis B3W22]
gi|405384251|gb|EKB43700.1| DNA topoisomerase 3 [Bacillus isronensis B3W22]
Length = 724
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ---KLFDFDVATM 69
G QTPTL V+R +I +FKPE FW + NG LK +W + +L + A
Sbjct: 198 GRVQTPTLALIVKREHEIANFKPEPFWEVEAEFNFNGKILKAKWHKNSVTRLLEERQAIA 257
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ + E+ +I ++ + P N L A+ A + PQM + + ++LY +G
Sbjct: 258 AANFCINKNV-EIKNIKKETKEYAPPLLFNLSALQATANRAFKFSPQMTLDILQKLYLKG 316
Query: 130 FISYPRTES 138
+SYPR++S
Sbjct: 317 VVSYPRSDS 325
>gi|374636217|ref|ZP_09707796.1| DNA topoisomerase I [Methanotorris formicicus Mc-S-70]
gi|373559790|gb|EHP86074.1| DNA topoisomerase I [Methanotorris formicicus Mc-S-70]
Length = 759
Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT-MFQ 71
G Q P L F V R L+I F P+ +W + L+ N L E++K +D A +++
Sbjct: 194 GRVQGPALAFLVDRELEIKKFVPKPYWVISA-LLDN---LNAIHEKEKFWDEKEANHVYE 249
Query: 72 KLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
K+ +++ I+ + +K+ P L T L + A S + P+ +A+RLY +G
Sbjct: 250 KIKDIKEGIVVGVKKRKKKIKPNPPFDLGT--LQREAHSIYKFSPKKTQDIAQRLYERGI 307
Query: 131 ISYPRTESTAYPSSFDF-RGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
+SYPR+ S P + LS + N+P +G Y ER+L E D HP I
Sbjct: 308 VSYPRSSSQKLPKDRKYLEDVLSIIKNHPNYGKYAERILNENLKPIEGKKDDPAHPAI 365
>gi|86133349|ref|ZP_01051931.1| DNA topoisomerase III [Polaribacter sp. MED152]
gi|85820212|gb|EAQ41359.1| DNA topoisomerase III [Polaribacter sp. MED152]
Length = 771
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 29/224 (12%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G QTPTL V RY +I +FKP+ +W L Q Y R LF+++
Sbjct: 186 VLSVGRVQTPTLAMLVNRYHEIQNFKPQPYWEL-----QTTY-------RNTLFNYEDGR 233
Query: 69 MFQK---LVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+K V+ D++ E++ +++K+ + P + L ++ G+ +++
Sbjct: 234 FLKKEDGQVLADKVAQSDFEIVSVTKKKGKEYAPKLFDLTGLQVYCNNKFGFSADETLKI 293
Query: 122 AERLYTQGFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++LY ++YPR ++T P+ G LS L+N + + + LL + K +
Sbjct: 294 VQKLYEMKVVTYPRVDTTFLPNDLYPKIHGILSKLSN---YSELTQPLLGKKIKKTKRVF 350
Query: 180 D---AGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
D DH I P + + L + ++Y + + F+ PD
Sbjct: 351 DDKKVTDHHAIIP--TGIQGNLQYNQQQVYDIITKRFIAVFYPD 392
>gi|407476805|ref|YP_006790682.1| DNA topoisomerase III [Exiguobacterium antarcticum B7]
gi|407060884|gb|AFS70074.1| DNA topoisomerase III [Exiguobacterium antarcticum B7]
Length = 705
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL V+R QI +F+PE F+ + + + ++ K+ D ++A +
Sbjct: 198 GRVQTPTLSLIVEREKQIETFRPETFFEVEADFARYKGKYINAKKQTKITDRELA---EN 254
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKV-ASSALGYGPQMAMQLAERLYTQGFI 131
+V + + V+ +K E +P +++LL+ AS G G + + +A++LY +G+I
Sbjct: 255 IVARTKGTAVVATIDKTEQVEKPPFWFSLSLLQTEASRRFGLGAKETLDIAQKLYIRGWI 314
Query: 132 SYPRTEST--AYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR--SGTDAGDHPPI 187
SYPRT+S+ + + F L L P + + + + R + DH I
Sbjct: 315 SYPRTDSSFVSKDEASQFPVILKRLLKQPEYTELTDIVTQNITNNKRYVNSAKVSDHYAI 374
Query: 188 TPMRS--ATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P A + G+DA ++Y + + FL +PD +
Sbjct: 375 IPTEEAGAVAKLSGRDA-QVYDLIVRRFLAAFAPDAR 410
>gi|441499377|ref|ZP_20981563.1| DNA topoisomerase III [Fulvivirga imtechensis AK7]
gi|441436910|gb|ELR70268.1| DNA topoisomerase III [Fulvivirga imtechensis AK7]
Length = 768
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 17/220 (7%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G QTPTL V R+ +I +F P+ +W L E K K F +
Sbjct: 186 VLSIGRVQTPTLAMLVNRHYEIENFVPQPYWELQTIY----RETKFNNTTGKFFSKEEGE 241
Query: 69 -MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ K+ +D L + DI +K+ + P + +L ++ G+ ++ ++L + LY
Sbjct: 242 ELLNKITGKD--LVITDIEKKEGKEYAPKLFDLTSLQVYCNTKFGFTAEVTLKLVQALYE 299
Query: 128 QGFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPR---SGTDAG 182
+ ++YPR ++T P+ G L L N + + E LL + K +
Sbjct: 300 KKVVTYPRVDTTFLPNDMYPKIPGILQGLPN---YSSFTEPLLGKKIRKSTKVFNDNKVT 356
Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
DH I P + + L D ++Y + + F+ PDCK
Sbjct: 357 DHHAIIP--TGEQKPLSGDEQKVYDIIVRRFIAVFYPDCK 394
>gi|414069029|ref|ZP_11405025.1| DNA topoisomerase I [Pseudoalteromonas sp. Bsw20308]
gi|410808487|gb|EKS14457.1| DNA topoisomerase I [Pseudoalteromonas sp. Bsw20308]
Length = 902
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V L G Q+ + V+R +I +F PE+FW +H + EL+LE +Q
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNTESELRLEVTKQDDKP 253
Query: 64 FDVATMFQKLV----MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F Q +++ +V+++ EK SK RP L T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQASAAVKSLENAKYKVVNVEEKP-SKSRPSAPLITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|392535762|ref|ZP_10282899.1| DNA topoisomerase I subunit omega [Pseudoalteromonas arctica A
37-1-2]
Length = 904
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V L G Q+ + V+R +I +F PE+FW +H + EL+LE +Q
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNTESELRLEVAKQAGKP 253
Query: 64 FDVATMFQKLV----MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F Q +++ +VI + EK SK RP L T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQASAAVKSLENAEYKVISVEEKP-SKSRPSAPLITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|359452501|ref|ZP_09241849.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20495]
gi|358050479|dbj|GAA78098.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20495]
Length = 902
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V L G Q+ + V+R +I +F PE+FW +H + EL+LE +Q
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNTESELRLEVTKQDDKP 253
Query: 64 FDVATMFQKLV----MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F Q +++ +V+++ EK SK RP L T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQASAAVKSLENAEYKVVNVEEKP-SKSRPSAPLITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|359441348|ref|ZP_09231248.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20429]
gi|358036818|dbj|GAA67497.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20429]
Length = 902
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V L G Q+ + V+R +I +F PE+FW +H + EL+LE +Q
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNTESELRLEVAKQAGKP 253
Query: 64 FDVATMFQKLV----MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F Q +++ +VI + EK SK RP L T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQASAAVKSLENAEYKVISVEEKP-SKSRPSAPLITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|359432016|ref|ZP_09222416.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20652]
gi|357921323|dbj|GAA58665.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20652]
Length = 902
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V L G Q+ + V+R +I +F PE+FW +H + EL+LE +Q
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNTESELRLEVAKQAGKP 253
Query: 64 FDVATMFQKLV----MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F Q +++ +VI + EK SK RP L T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQASAAVKSLENAEYKVISVEEKP-SKSRPSAPLITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|332533585|ref|ZP_08409447.1| DNA topoisomerase I [Pseudoalteromonas haloplanktis ANT/505]
gi|332036987|gb|EGI73446.1| DNA topoisomerase I [Pseudoalteromonas haloplanktis ANT/505]
Length = 902
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V L G Q+ + V+R +I +F PE+FW +H + EL+LE +Q
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNTESELRLEVTKQAGKA 253
Query: 64 FDVATMFQKLV----MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F Q +++ +VI + EK SK RP L T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQASAAVKSLENAEYKVISVEEKP-SKSRPSAPLITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|134299706|ref|YP_001113202.1| DNA topoisomerase III [Desulfotomaculum reducens MI-1]
gi|134052406|gb|ABO50377.1| DNA topoisomerase III [Desulfotomaculum reducens MI-1]
Length = 695
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 33/232 (14%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQKLFD-----FDV 66
G QTPTLG V R +I +F P +W L+ ++ +G + +W + K + D
Sbjct: 188 GRVQTPTLGLIVAREKEIKTFIPAHYWELYADFVTTDGQVYRGKWFKNKNKNRFNQEADG 247
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
++ K+V QD VI + EK S+ P N +L K A+ G+ +++A+ LY
Sbjct: 248 ISIKNKIVGQDG--SVIKVEEKAVSEPPPTLFNLNDLQKEANKKFGFTASQTLEIAQALY 305
Query: 127 TQ-GFISYPRTE--------STAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRS 177
+ +SYPRTE + PS G++S + + +A + P+
Sbjct: 306 EKHKLLSYPRTEFKHLTNELAKTIPSRLSALGSVSGYS----------KFVAYAQSAPKP 355
Query: 178 G------TDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
G GDH + P L + ++Y+ V + FL P +Y
Sbjct: 356 GKRFIDDAKVGDHHALIPTNVKPTAALSPNEAKIYNMVARRFLAMFFPAAEY 407
>gi|398998818|ref|ZP_10701575.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM18]
gi|398133045|gb|EJM22289.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM18]
Length = 875
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A V L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q +V +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNETQAMVALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + +A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSADAVTMARTYIEGEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|315054067|ref|XP_003176408.1| DNA topoisomerase 3 [Arthroderma gypseum CBS 118893]
gi|311338254|gb|EFQ97456.1| DNA topoisomerase 3 [Arthroderma gypseum CBS 118893]
Length = 326
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 106 VASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVE 165
+ S L Q M+ AE LYT+GFISYPRTE+ + + D + + + WG+Y
Sbjct: 1 MGSKYLRIDSQAIMKAAETLYTKGFISYPRTETDQFDNEIDLKKLVEKQYPSEAWGEYAR 60
Query: 166 RLLAEGYAKPRSGTDAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
G+ +PR G + HPPI P+ + +L + ++Y +V + FL S D K
Sbjct: 61 ---GGGFKQPRRGRNNDKAHPPIHPVAFVSPTVLNANEKKVYEFVTRRFLACCSEDAK 115
>gi|372210297|ref|ZP_09498099.1| DNA topoisomerase III [Flavobacteriaceae bacterium S85]
Length = 771
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 28/224 (12%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP------YLVQNGYELKLEWERQKLF 62
+L G QTPTL V+R+L+I +FKP+ +W + + + G LK E Q L
Sbjct: 186 VLSVGRVQTPTLAMVVKRFLEIQNFKPQPYWEIQTLYRDTIFNNEQGRYLKKEDGEQTL- 244
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
+++D+ LE+ + +K+ + P + L ++ G+ ++L
Sbjct: 245 ----------ALIKDKPLEITSVLKKKGKEYAPKLFDLTGLQVYCNNKFGFTADETLKLT 294
Query: 123 ERLYTQGFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPR---- 176
+ LY Q ++YPR ++T P+ RG LS L+ + +LAE K
Sbjct: 295 QGLYEQKVVTYPRVDTTFLPNDLYPKVRGILSKLSR---YQTLTAPVLAEKKIKKSIKVF 351
Query: 177 SGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ DH I P + E L +A ++Y + + F+ PD
Sbjct: 352 NDKKVTDHHAIIP--TGVEVPLHANAQKVYDIITRRFIAVFYPD 393
>gi|398843433|ref|ZP_10600578.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM102]
gi|398102888|gb|EJL93063.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM102]
Length = 875
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A V L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSVDAVAMARTYIEGEFGKKYLPENPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|398900315|ref|ZP_10649372.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM50]
gi|398181214|gb|EJM68784.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM50]
Length = 875
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A V L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSVDAVAMARTYIEGEFGKKYLPENPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|414864982|tpg|DAA43539.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
Length = 329
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
+L+L YGPCQ PTLGF V+R+ +I + +PE+FWT++ + W R LFD+
Sbjct: 215 SLVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCTHTSDEGTASFGWIRGHLFDYSC 274
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
A ++ + + + V ++ +++ K P L+TV L K AS + M++
Sbjct: 275 AISIYEMCVSEPMATVQNVRNQEKLKYPPYPLSTVELQKRASRYFRMSSEHTMKV 329
>gi|77360291|ref|YP_339866.1| DNA topoisomerase I [Pseudoalteromonas haloplanktis TAC125]
gi|76875202|emb|CAI86423.1| DNA topoisomerase type I, omega protein [Pseudoalteromonas
haloplanktis TAC125]
Length = 905
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V L G Q+ + V+R +I +F PE+FW +H + EL+LE +Q
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNAESELRLEVAKQADKP 253
Query: 64 FDVATMFQKLV----MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F Q +++ +VI + EK SK RP L T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQASAAVKSLENAEYKVISVDEKP-SKSRPSAPLITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|424865490|ref|ZP_18289355.1| DNA topoisomerase I [SAR86 cluster bacterium SAR86B]
gi|400758758|gb|EJP72960.1| DNA topoisomerase I [SAR86 cluster bacterium SAR86B]
Length = 871
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 19/225 (8%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQK---LFDFDV 66
L G Q+ L V+R +QI F PE+FW + L ++ ++ + R+K L +
Sbjct: 196 LSAGRVQSVALRLLVEREVQIQEFNPEEFWEIDMLLAKDANKIDFKLNRKKSDPLLQKEE 255
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQLAERL 125
A + LV Q+ I +D ++ +K RP T L + AS+ L + + M+ A++L
Sbjct: 256 AEKIKSLVEQNNI--TVDEIIQKPTKTRPRAPFITSTLQQSASTRLSFNVKRTMRTAQKL 313
Query: 126 YTQGFISYPRTE--STAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
Y G+I+Y RT+ S + S D R + N +G+ + Y+ + +A
Sbjct: 314 YEAGYITYMRTDAPSLSKDSIEDARNYI-----NQHFGEKYITNAPKIYSSTENAQEA-- 366
Query: 184 HPPITPMRS--ATEDMLG--KDAWRLYSYVCQHFLGTVSPDCKYI 224
H I P + D++G ++ RLY + Q F+ PD +Y+
Sbjct: 367 HEAIRPTNAFVTPNDLIGVSEEEKRLYKLIWQQFIACQMPDAEYL 411
>gi|398860108|ref|ZP_10615766.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM79]
gi|398235313|gb|EJN21144.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM79]
Length = 875
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A V L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + +A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSADAVTMARTYIEGEFGKKYLPENPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|407362822|ref|ZP_11109354.1| DNA topoisomerase I subunit omega [Pseudomonas mandelii JR-1]
Length = 877
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A V L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + +A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSADAVTMARTYIEGEFGKKYLPENPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|398865041|ref|ZP_10620568.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM78]
gi|398244204|gb|EJN29768.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM78]
Length = 875
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSADAVAMARTYIEGEFGKKYLPENPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|433185993|ref|ZP_20370217.1| DNA topoisomerase III [Escherichia coli KTE85]
gi|431700314|gb|ELJ65295.1| DNA topoisomerase III [Escherichia coli KTE85]
Length = 669
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 13/227 (5%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------E 57
V+ +L G QTPTL V+R +I +F P +W L+ +L ++ + W
Sbjct: 184 VSGVLSIGRVQTPTLAMVVRRDAEIKNFIPVPYWQLNLWLEKDNVRFRAVWVAAEQYCDA 243
Query: 58 RQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQM 117
++ + AT Q Q + V ++S K+E P + L +V S G G Q
Sbjct: 244 EKRCVNVQAATSVQSQCRQAGVAVVREVSSKREKTPPPLCFSLGTLQEVCSKKFGLGAQA 303
Query: 118 AMQLAERLYTQ-GFISYPRTESTAYPSSF--DFRGTLSALAN-NPVWGDYVERLLAEGYA 173
+ +A+ LY + +YPRT+ P S + L+A+AN +P + +L + +
Sbjct: 304 VLDIAQSLYEKHKATTYPRTDCGYLPVSMHKEVPEVLAAVANTDPDIAPELAKLSPDIVS 363
Query: 174 KPRSGTDAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
+ + H I P R A L + R+Y + QH+L P
Sbjct: 364 RVWNDKKITAHHAIIPTRQAFNIGALSDNELRVYRLIRQHYLAQFLP 410
>gi|410092020|ref|ZP_11288563.1| DNA topoisomerase I subunit omega [Pseudomonas viridiflava
UASWS0038]
gi|409760676|gb|EKN45803.1| DNA topoisomerase I subunit omega [Pseudomonas viridiflava
UASWS0038]
Length = 870
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 20/231 (8%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDF 64
V L G Q+ + V+R +I +F PE++W +H L G ++ E R+ F
Sbjct: 194 VARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGANVRFEVARENGEAF 253
Query: 65 DVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
Q + +++ +I +K S T L + AS+ LGYG + M
Sbjct: 254 KPLNEAQAMAALEKLKASSYSIIKREDKPTSSKPSAPFITSTLQQAASNRLGYGVKKTMM 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKPRS 177
+A+RLY G+I+Y RT+ST + ++A + + ++ ++ L E Y+
Sbjct: 314 MAQRLYEAGYITYMRTDST------NLSADAVSMARDYIETEFGKKYLPESPNVYSSKEG 367
Query: 178 GTDAGDHPPITP----MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
+A H I P M + + +DA RLY + + F+ P +Y+
Sbjct: 368 AQEA--HEAIRPSDVNMHPSKLSGMERDAERLYELIWRQFVACQMPPAQYL 416
>gi|398927428|ref|ZP_10662961.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM48]
gi|398169828|gb|EJM57797.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM48]
Length = 875
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSADAVAMARTYIEGEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|395499907|ref|ZP_10431486.1| DNA topoisomerase I subunit omega [Pseudomonas sp. PAMC 25886]
Length = 873
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ E R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGNNVRFEVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + ++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSQDAVAMARTYIESEFGKKYLPEKPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|395648375|ref|ZP_10436225.1| DNA topoisomerase I subunit omega [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 873
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ E R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGANVRFEVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + ++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSQDAVAMARTYIESEFGKKYLPEKPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|395798513|ref|ZP_10477797.1| DNA topoisomerase I subunit omega [Pseudomonas sp. Ag1]
gi|421143607|ref|ZP_15603546.1| DNA topoisomerase I [Pseudomonas fluorescens BBc6R8]
gi|395337248|gb|EJF69105.1| DNA topoisomerase I subunit omega [Pseudomonas sp. Ag1]
gi|404505298|gb|EKA19329.1| DNA topoisomerase I [Pseudomonas fluorescens BBc6R8]
Length = 873
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ E R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGNNVRFEVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + ++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSQDAVAMARTYIESEFGKKYLPEKPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|440738735|ref|ZP_20918261.1| DNA topoisomerase I subunit omega [Pseudomonas fluorescens
BRIP34879]
gi|440380840|gb|ELQ17397.1| DNA topoisomerase I subunit omega [Pseudomonas fluorescens
BRIP34879]
Length = 873
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ E R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGNNVRFEVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + ++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSQDAVAMARTYIESEFGKKYLPEKPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|399030439|ref|ZP_10730909.1| DNA topoisomerase III [Flavobacterium sp. CF136]
gi|398071576|gb|EJL62828.1| DNA topoisomerase III [Flavobacterium sp. CF136]
Length = 763
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 15/218 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G QTPTL V R+ +I +FKP+ +W L E+ +E + + +
Sbjct: 186 VLSIGRVQTPTLAMVVDRFKEIENFKPQPYWELQTLY----REILFSYEEGRFLNKEDGE 241
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ V + E++ + +K ++ P + L ++ G+ +++A+ LY Q
Sbjct: 242 ILANKVKESE-FEIVSVEKKNGNEFAPKLFDLTGLQVYCNTKFGFSADETLKIAQSLYEQ 300
Query: 129 GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAK-PRSGTDAG--D 183
++YPR ++T PS G L L+N + + LL + K P+ D D
Sbjct: 301 KVVTYPRVDTTFLPSDIYPKVPGILQKLSN---YSTLTQPLLEKKIKKSPKVFNDKKVTD 357
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
H I P + E L + ++Y + + F+ DC
Sbjct: 358 HHAIIP--TGIEINLPHNQQQVYDIIVKRFIAVFYDDC 393
>gi|445117422|ref|ZP_21378819.1| DNA topoisomerase III [Prevotella nigrescens F0103]
gi|444839815|gb|ELX66865.1| DNA topoisomerase III [Prevotella nigrescens F0103]
Length = 709
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 7/213 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT-MFQ 71
G QTPTL R+ + F P+ FW L V++G E ++ F+ + AT +++
Sbjct: 195 GRVQTPTLCMVCSRFWEHKKFTPQPFWQL-SLSVKDGDESFRFSSPERCFNKEEATALYE 253
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
KL I + I K+ + P + L K A+S Y + + LA+RLY +G+I
Sbjct: 254 KLKAASHIT-IGTIVRKEAKQEPPLLYDLTTLQKEANSRHRYSAEQTLTLAQRLYEKGYI 312
Query: 132 SYPRTESTAYPSS-FDFRGTLSA-LANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITP 189
+YPRT S F+ TL A L ++PVWG + R L+ A+ +G DH +
Sbjct: 313 TYPRTGSRYISEDVFEEIPTLIAFLHDHPVWGVHA-RNLSVLNARSVNGKKVTDHHALVI 371
Query: 190 MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
D+ G++A +Y+ + L S C+
Sbjct: 372 TGKKPIDVFGEEAV-IYNMITGRMLEAFSARCE 403
>gi|159906081|ref|YP_001549743.1| DNA topoisomerase I [Methanococcus maripaludis C6]
gi|159887574|gb|ABX02511.1| DNA topoisomerase I [Methanococcus maripaludis C6]
Length = 814
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 7/201 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q P L F V + ++I +F P +W L L+ N EL E +K +D D A +
Sbjct: 194 GRVQGPALAFLVDKEMEIKNFVPTPYWVLEA-LLDN--ELIAIHELEKFWDEDEANKAFE 250
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V + V D+ + +S + L + A + + P+ ++A++LY +G+ S
Sbjct: 251 KVKDQKQATVSDVKKTMKSIPPNVPFDLGTLQREAHNMFRFSPKKTQEIAQKLYEKGYCS 310
Query: 133 YPRTESTAYPSSFDF-RGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPITPM 190
YPRT S P + L L+ N + Y+E +L E KP SG D HP + +
Sbjct: 311 YPRTSSQKLPDDKAYMEEILKNLSKNKNYRPYIETILNEN-RKPISGKKDDPAHPAVHAV 369
Query: 191 RSATEDMLGKDAWRLYSYVCQ 211
++ L D +LY + +
Sbjct: 370 -DVPKEHLPDDELKLYELIAR 389
>gi|89074061|ref|ZP_01160562.1| DNA topoisomerase I [Photobacterium sp. SKA34]
gi|89050199|gb|EAR55710.1| DNA topoisomerase I [Photobacterium sp. SKA34]
Length = 884
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 24/228 (10%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDF---- 64
L G Q+ + V+R +I +F PE+FW +H + G + L+L +Q F
Sbjct: 197 LSAGRVQSVAVKLIVEREREINAFDPEEFWDIHADTLTVGKDALRLMVAQQAGKTFRPVN 256
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ TM K +++ EVID ++ S T L + AS+ LGYG + M LA+R
Sbjct: 257 EKDTMAAKALLEKAAYEVIDREDRPTSSKPSAPYITSTLQQAASTRLGYGVKRTMGLAQR 316
Query: 125 LYTQGFISYPRTEST-----AYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
LY G I+Y RT+ST A S+ +F G+ +GD +A Y ++
Sbjct: 317 LYEAGHITYMRTDSTNLSKEAVESAREFIGS--------EYGDEYLPKVANVYGSKKNAQ 368
Query: 180 DAGDHPPITP----MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+A H I P M++ + + DA +LY + + F+ KY
Sbjct: 369 EA--HEAIRPSHVEMKAENLEGMEADAVKLYDLIWRQFVSCQMVPAKY 414
>gi|358410628|gb|AEU10023.1| DNA topoisomerase I [Photobacterium damselae subsp. piscicida]
Length = 882
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 20/218 (9%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGY-ELKLEWERQKLFDF---- 64
L G Q+ + V+R +I +F PE+FW +H + G EL+L +Q F
Sbjct: 198 LSAGRVQSVAVKLIVEREREIKAFVPEEFWDIHANTLTAGKDELRLLVAQQAGKAFRPVN 257
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ TM K ++ EVID ++ S T L + AS+ LGYG + M LA+R
Sbjct: 258 ETETMAAKALLDKAAYEVIDREDRPTSSKPSAPFITSTLQQAASTRLGYGVKRTMGLAQR 317
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPRSGTDA 181
LY G+I+Y RT+ST + A + G+Y + L Y + +A
Sbjct: 318 LYEAGYITYMRTDST------NLSKEAVEAAREFISGEYGDEYLPGKPNVYGSKENAQEA 371
Query: 182 GDHPPITP----MRSATEDMLGKDAWRLYSYVCQHFLG 215
H I P +R+ D + +DA +LY + + F+
Sbjct: 372 --HEAIRPSSVTVRAEDLDGMEQDAVKLYDLIWRQFVA 407
>gi|89101030|ref|ZP_01173872.1| DNA topoisomerase III [Bacillus sp. NRRL B-14911]
gi|89084262|gb|EAR63421.1| DNA topoisomerase III [Bacillus sp. NRRL B-14911]
Length = 579
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 7/210 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL V+R +I +FK E FW + G K +W + D M +K
Sbjct: 200 GRVQTPTLALIVKREKEIENFKSEPFWEVMATFNMEGKTYKGKWHKDGNSRLDNEGMARK 259
Query: 73 L--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGF 130
+ + + + I ++++ + P N +L A+ Y PQ +++A++LY +G
Sbjct: 260 IQQFAEGKNARIESIDKERKEFLPPYLFNLSSLQAEANKLYKYSPQKTLEIAQKLYVKGI 319
Query: 131 ISYPRTEST--AYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR--SGTDAGDHPP 186
ISYPR++S+ + F TL L+ + + ++ R + DH
Sbjct: 320 ISYPRSDSSFVTKEEAAAFPETLEKLSKMDAFKAFFPLPVSSILDNKRFVNEKKVTDHYA 379
Query: 187 ITPMRSATE-DMLGKDAWRLYSYVCQHFLG 215
I P A + +G D R+Y + + +
Sbjct: 380 IIPTEQAADPAKMGADEARIYELIVKRLIA 409
>gi|90412196|ref|ZP_01220202.1| DNA topoisomerase I [Photobacterium profundum 3TCK]
gi|90326920|gb|EAS43305.1| DNA topoisomerase I [Photobacterium profundum 3TCK]
Length = 884
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 16/224 (7%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDF---- 64
L G Q+ + V+R +I +F PE+FW +H + G + L+L +Q F
Sbjct: 197 LSAGRVQSVAVKLIVEREREIKAFTPEEFWDIHANTLTVGKDALRLMVSQQAGKAFRPVN 256
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ TM K V+ +V+D ++ S T L + AS+ LGYG + M LA+R
Sbjct: 257 EAQTMAAKSVLDSAEYKVVDREDRPTSSKPSAPYITSTLQQAASTRLGYGVKRTMGLAQR 316
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD- 183
LY G+I+Y RT+ST + A + +Y E L + K S +A +
Sbjct: 317 LYEAGYITYMRTDST------NLSNDAVVAAREFIGNEYGENYLPKEAIKYGSKKNAQEA 370
Query: 184 HPPITP--MRSATEDMLG--KDAWRLYSYVCQHFLGTVSPDCKY 223
H I P + E++ G DA +LY + + F+ KY
Sbjct: 371 HEAIRPSSVEVQAENLEGMDADAVKLYDLIWRQFVSCQMVPAKY 414
>gi|398940425|ref|ZP_10669242.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM41(2012)]
gi|398162943|gb|EJM51121.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM41(2012)]
Length = 877
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A V L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + +A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSVDAVTMARTYIEGEFGKKYLPENPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|254361727|ref|ZP_04977863.1| DNA topoisomerase TopA [Mannheimia haemolytica PHL213]
gi|452744562|ref|ZP_21944405.1| DNA topoisomerase I subunit omega [Mannheimia haemolytica serotype
6 str. H23]
gi|153093253|gb|EDN74259.1| DNA topoisomerase TopA [Mannheimia haemolytica PHL213]
gi|452087338|gb|EME03718.1| DNA topoisomerase I subunit omega [Mannheimia haemolytica serotype
6 str. H23]
Length = 868
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 17/216 (7%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+ + V+R +I +F+ E+FWT+ N +L LE K F +
Sbjct: 198 LSAGRVQSVAVKLLVEREREIKAFQSEEFWTILANTQINRKKLPLELTTYKGKKFSASNE 257
Query: 70 FQKLVMQDRILE-----VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ V R LE V +I K+ S T +L + AS+ LG+G + M LA+R
Sbjct: 258 AEANVAV-RALEQSDFIVSNIEAKETSSRAAAPFITSSLQRAASTRLGFGVKKTMMLAQR 316
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD- 183
LY G+I+Y RT+ST R L A+A + ++ L E RS +A +
Sbjct: 317 LYEAGYITYMRTDSTNLS-----REAL-AMARGYIQDNFGANYLPEKANVYRSKDNAQEA 370
Query: 184 HPPITP----MRSATEDMLGKDAWRLYSYVCQHFLG 215
H I P ++ A + KDA RLY + + FL
Sbjct: 371 HEAIRPSDVNVKMADLKGMDKDAERLYDLIWRRFLA 406
>gi|229589079|ref|YP_002871198.1| DNA topoisomerase I [Pseudomonas fluorescens SBW25]
gi|229360945|emb|CAY47805.1| DNA topoisomerase I [Pseudomonas fluorescens SBW25]
Length = 873
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ E R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGANVRFEVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + ++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSVDAVAMARTYIESEFGKKYLPEKPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|261492036|ref|ZP_05988611.1| DNA topoisomerase TopA [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261495013|ref|ZP_05991481.1| DNA topoisomerase TopA [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261309329|gb|EEY10564.1| DNA topoisomerase TopA [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261312319|gb|EEY13447.1| DNA topoisomerase TopA [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 868
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 17/216 (7%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+ + V+R +I +F+ E+FWT+ N +L LE K F +
Sbjct: 198 LSAGRVQSVAVKLLVEREREIKAFQSEEFWTILANTQINRKKLPLELTTYKGKKFSASNE 257
Query: 70 FQKLVMQDRILE-----VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ V R LE V +I K+ S T +L + AS+ LG+G + M LA+R
Sbjct: 258 AEANVAV-RALEQSDFIVSNIEAKETSSRAAAPFITSSLQRAASTRLGFGVKKTMMLAQR 316
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD- 183
LY G+I+Y RT+ST R L A+A + ++ L E RS +A +
Sbjct: 317 LYEAGYITYMRTDSTNLS-----REAL-AMARGYIQDNFGANYLPEKANVYRSKDNAQEA 370
Query: 184 HPPITP----MRSATEDMLGKDAWRLYSYVCQHFLG 215
H I P ++ A + KDA RLY + + FL
Sbjct: 371 HEAIRPSDVNVKMADLKGMDKDAERLYDLIWRRFLA 406
>gi|269102958|ref|ZP_06155655.1| DNA topoisomerase I [Photobacterium damselae subsp. damselae CIP
102761]
gi|268162856|gb|EEZ41352.1| DNA topoisomerase I [Photobacterium damselae subsp. damselae CIP
102761]
Length = 852
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 20/218 (9%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGY-ELKLEWERQKLFDF---- 64
L G Q+ + V+R +I +F PE+FW +H + G EL+L +Q F
Sbjct: 168 LSAGRVQSVAVKLIVEREREIKAFVPEEFWDIHANTLTAGKDELRLLVAQQAGKAFRPVN 227
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ TM K ++ EVID ++ S T L + AS+ LGYG + M LA+R
Sbjct: 228 ETETMAAKALLDKAAYEVIDREDRPTSSKPSAPFITSTLQQAASTRLGYGVKRTMGLAQR 287
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL---AEGYAKPRSGTDA 181
LY G+I+Y RT+ST + A + G+Y + L Y + +A
Sbjct: 288 LYEAGYITYMRTDST------NLSKEAVEAAREFISGEYGDEYLPGKPNVYGSKENAQEA 341
Query: 182 GDHPPITP----MRSATEDMLGKDAWRLYSYVCQHFLG 215
H I P +R+ D + +DA +LY + + F+
Sbjct: 342 --HEAIRPSSVTVRAEDLDGMEQDAVKLYDLIWRQFVA 377
>gi|291549901|emb|CBL26163.1| DNA topoisomerase I [Ruminococcus torques L2-14]
Length = 691
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 27/241 (11%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW-----ER 58
A V L G Q+ L R +I +F PE++W+L L G + L E+
Sbjct: 156 AKVKRGLSAGRVQSVALRIVADREAEIDAFIPEEYWSLDAQLKVKGEKRPLTAKFYGTEK 215
Query: 59 QKLFDFDVATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQM 117
+K+ M + L +++ ++ DI + ++ P T L + A+ AL +G Q
Sbjct: 216 KKMTIHSKEEMDEILKKLENEEFQITDIKNSERTRKAPLPFTTSTLQQEAAKALNFGTQK 275
Query: 118 AMQLAERLY---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL 168
M++A++LY T G I+Y RT+ST D A A + + Y E +
Sbjct: 276 TMRIAQQLYEGVDIKGNGTVGVITYLRTDSTRISEEAD------AAARSYIAETYGEAYV 329
Query: 169 AEGYAKPRSGTDAGD-HPPITPMR-----SATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
AEG + D H I P +A +D L +D +RLY + + F + K
Sbjct: 330 AEGTKTKSADKKIQDAHEAIRPTDITRTPAAIKDSLSRDQFRLYQLIWKRFTASRMQPAK 389
Query: 223 Y 223
Y
Sbjct: 390 Y 390
>gi|229916207|ref|YP_002884853.1| DNA topoisomerase III [Exiguobacterium sp. AT1b]
gi|229467636|gb|ACQ69408.1| DNA topoisomerase III [Exiguobacterium sp. AT1b]
Length = 708
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 12/220 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW---ERQKLFDFD 65
+ G QTPTL V R +I F PE ++ + L + K ++ + KL +
Sbjct: 194 VFSLGRVQTPTLALIVNREREIKQFVPEPYFEVEATLAKGRGTFKAKYTFGKTTKLKTRE 253
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A K I++ ID EK E P + L A G+G + + +A++L
Sbjct: 254 EADAVVKRASGTAIVKTIDKEEKIEQP--PFWFSLSGLQAEAGKRFGFGAKKTLDIAQKL 311
Query: 126 YTQGFISYPRTES--TAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA-- 181
YT+G+ISYPRT+S + F T + L + + + LL E +K R +A
Sbjct: 312 YTKGWISYPRTDSGFVTPDEATLFPQTKARLLKSDAYAG-LRDLLTEDPSKNRRYVNAKK 370
Query: 182 -GDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
DH I P + + LG D +LY + + FL +P
Sbjct: 371 VSDHYAIIPTEACGDVTRLGGDEAKLYDLINRRFLAAFAP 410
>gi|54309641|ref|YP_130661.1| DNA topoisomerase I [Photobacterium profundum SS9]
gi|46914079|emb|CAG20859.1| putative DNA topoisomerase I [Photobacterium profundum SS9]
Length = 883
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 16/224 (7%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDF---- 64
L G Q+ + V+R +I +F PE+FW +H + G + L+L +Q F
Sbjct: 197 LSAGRVQSVAVKLIVEREREIKAFTPEEFWDIHANTLTVGKDALRLIVSQQAGKAFRPVN 256
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ TM K V+ +V+D ++ S T L + AS+ LGYG + M LA+R
Sbjct: 257 EAQTMAAKSVLDSAEYKVVDREDRPTSSKPSAPYITSTLQQAASTRLGYGVKRTMGLAQR 316
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD- 183
LY G+I+Y RT+ST + A + +Y E L + K S +A +
Sbjct: 317 LYEAGYITYMRTDST------NLSNDAVVAAREFIGSEYGENYLPKEAIKYGSKKNAQEA 370
Query: 184 HPPITP--MRSATEDMLG--KDAWRLYSYVCQHFLGTVSPDCKY 223
H I P + E++ G DA +LY + + F+ KY
Sbjct: 371 HEAIRPSSVEVQAENLEGMDADAVKLYDLIWRQFVSCQMVPAKY 414
>gi|70607128|ref|YP_255998.1| DNA topoisomerase I [Sulfolobus acidocaldarius DSM 639]
gi|449067368|ref|YP_007434450.1| DNA topoisomerase I [Sulfolobus acidocaldarius N8]
gi|449069638|ref|YP_007436719.1| DNA topoisomerase I [Sulfolobus acidocaldarius Ron12/I]
gi|68567776|gb|AAY80705.1| DNA topoisomerase I family A [Sulfolobus acidocaldarius DSM 639]
gi|449035876|gb|AGE71302.1| DNA topoisomerase I [Sulfolobus acidocaldarius N8]
gi|449038146|gb|AGE73571.1| DNA topoisomerase I [Sulfolobus acidocaldarius Ron12/I]
Length = 668
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 5/218 (2%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+IL G Q+PTL + ++ F P +++++ + E K+ + + + A
Sbjct: 194 VILSAGRVQSPTLIHVINNTVKRELFVPLPYYSINLTINLKNKEFKITIPKT-FENKNEA 252
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + + + + V +I K RP N +L A GY P + +LAE LY
Sbjct: 253 KQYLEEIKKVGEVTVTNIELKDAVIYRPPPFNLTDLQLEAGRLFGYSPYLVERLAENLYL 312
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERL--LAEGYAKPRSG-TDAGDH 184
G ISYPRT S P S + + +L+ + +G + L + +G R G D H
Sbjct: 313 NGLISYPRTNSQKIPPSVNIYQIIDSLSKSKRYGSLINTLSQITKGKYIVRQGEKDDPAH 372
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P I P ++ K+ +LY + + FL ++S D +
Sbjct: 373 PAIYPTGELPYNLDTKEL-KLYELILRRFLASMSTDAR 409
>gi|392539150|ref|ZP_10286287.1| DNA topoisomerase I subunit omega [Pseudoalteromonas marina mano4]
Length = 902
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ--KL 61
A V L G Q+ + V+R +I +F PE+FW +H + + +L+LE +Q K
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNSESDLRLEVTKQADKP 253
Query: 62 FDFDVATMFQKLV--MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F ++ V ++ +V+++ EK SK RP L T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQIKEAVKSLESAEYKVVNVEEKP-SKSRPSAPLITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|119469271|ref|ZP_01612210.1| DNA topoisomerase I [Alteromonadales bacterium TW-7]
gi|119447135|gb|EAW28404.1| DNA topoisomerase I [Alteromonadales bacterium TW-7]
Length = 902
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ--KL 61
A V L G Q+ + V+R +I +F PE+FW +H + + +L+LE +Q K
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNSESDLRLEVTKQADKP 253
Query: 62 FDFDVATMFQKLV--MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F ++ V ++ +V+++ EK SK RP L T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQIKEAVKSLESAEYKVVNVEEKP-SKSRPSAPLITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|300724290|ref|YP_003713608.1| DNA topoisomerase III [Xenorhabdus nematophila ATCC 19061]
gi|297630825|emb|CBJ91494.1| DNA topoisomerase III [Xenorhabdus nematophila ATCC 19061]
Length = 664
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 15/225 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQK 60
+L G QTPTL V R I F+P+ +W + L ++ + +W E ++
Sbjct: 187 VLSIGRVQTPTLALVVNRDNDIARFEPKPYWQVMATLQKDDISFRAKWLPAPDDGDEEKR 246
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
D+A + Q + V ++++K+E P + L +VAS G G +
Sbjct: 247 CIREDIAQSVVQRCQQTQDAVVTELTQKREKTPPPLCFDLGMLQQVASRQWGMGAGQVLT 306
Query: 121 LAERLY-TQGFISYPRTESTAYPSSF--DFRGTLSALA-NNPVWGDYVERLLAEGYAKPR 176
+A+ LY T +YPRT+ P S + +AL +P + +L A +++
Sbjct: 307 IAQSLYETHKATTYPRTDCGYLPVSMRENIPAVFTALTRTDPAMSAIISQLDASAFSRVW 366
Query: 177 SGTDAGDHPPITPMRSATEDM--LGKDAWRLYSYVCQHFLGTVSP 219
+ + HP I P R T DM L D ++Y + ++L P
Sbjct: 367 NDSQITAHPAIIPTRH-TFDMTKLTADELKVYQLIRHYYLAQFLP 410
>gi|134045820|ref|YP_001097306.1| DNA topoisomerase I [Methanococcus maripaludis C5]
gi|132663445|gb|ABO35091.1| DNA topoisomerase I [Methanococcus maripaludis C5]
Length = 812
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 7/201 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q P L F V + L+I +F P +W L L+ N EL E +K +D + A +
Sbjct: 194 GRVQGPALAFLVDKELEIRNFVPTPYWVLEA-LLDN--ELIAIHELEKFWDEEEANNAFE 250
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V + V D+ + +S + L + A + + P+ ++A++LY +G+ S
Sbjct: 251 KVKDQKQATVSDVKKTMKSIPPNPPFDLGALQREAHNMFRFSPKRTQEIAQKLYEKGYCS 310
Query: 133 YPRTESTAYPSSFDFRG-TLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPITPM 190
YPRT S P + L L+ N + Y+E++L+E KP SG D HP + +
Sbjct: 311 YPRTSSQKLPDDKAYMDEILKNLSKNKDYKPYIEKILSEN-RKPISGKKDDPAHPAVHAV 369
Query: 191 RSATEDMLGKDAWRLYSYVCQ 211
E L D +LY + +
Sbjct: 370 DVPKEK-LPDDELKLYELIAR 389
>gi|150402130|ref|YP_001329424.1| DNA topoisomerase I [Methanococcus maripaludis C7]
gi|150033160|gb|ABR65273.1| DNA topoisomerase I [Methanococcus maripaludis C7]
Length = 814
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 7/201 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q P L F V + ++I +F P +W L L+ N EL E +K +D + A +
Sbjct: 194 GRVQGPALAFLVDKEMEIKNFVPTPYWVLEA-LLDN--ELIAIHELEKFWDEEQANEAFE 250
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V + V D+ + +S + L + A + + P+ ++A++LY +G+ S
Sbjct: 251 KVKGQKEATVSDVKKTMKSIPPNPPFDLGALQREAHNMFRFSPKKTQEIAQKLYEKGYCS 310
Query: 133 YPRTESTAYPSSFDFRG-TLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPITPM 190
YPRT S P + L L+ N + Y+ER+L+E KP SG D HP + +
Sbjct: 311 YPRTSSQKLPDDKAYMDEILKNLSKNKNYKPYIERILSEN-RKPISGKKDDPAHPAVHAV 369
Query: 191 RSATEDMLGKDAWRLYSYVCQ 211
++ L D +LY + +
Sbjct: 370 -DVPKEHLPDDELKLYELIAR 389
>gi|359450752|ref|ZP_09240176.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20480]
gi|358043448|dbj|GAA76425.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20480]
Length = 902
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ--KL 61
A V L G Q+ + V+R +I +F PE+FW +H + + +L+LE +Q K
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNSESDLRLEVTKQADKP 253
Query: 62 FDFDVATMFQKLV--MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F ++ V ++ +V+++ EK SK RP L T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQIKEAVKSLESAEYKVVNVEEKP-SKSRPSAPLITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|392555337|ref|ZP_10302474.1| DNA topoisomerase I subunit omega [Pseudoalteromonas undina NCIMB
2128]
Length = 902
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V L G Q+ + V+R +I +F PE+FW +H + + +L+LE +Q
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNSESDLRLEVTKQADKP 253
Query: 64 FDVATMFQKLV----MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F Q +++ +V+ + EK SK RP T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQATAAVKSLENAEYKVVSVEEKP-SKSRPSAPFITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|315126455|ref|YP_004068458.1| DNA topoisomerase I [Pseudoalteromonas sp. SM9913]
gi|315014969|gb|ADT68307.1| DNA topoisomerase I [Pseudoalteromonas sp. SM9913]
Length = 902
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V L G Q+ + V+R +I +F PE+FW +H + + +L+LE +Q
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNSESDLRLEVTKQADKP 253
Query: 64 FDVATMFQKLV----MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F Q +++ +V+ + EK SK RP T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQATAAVKSLENAEYKVVSVEEKP-SKSRPSAPFITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|336314991|ref|ZP_08569904.1| DNA topoisomerase I, bacterial [Rheinheimera sp. A13L]
gi|335880613|gb|EGM78499.1| DNA topoisomerase I, bacterial [Rheinheimera sp. A13L]
Length = 865
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 103/230 (44%), Gaps = 28/230 (12%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWERQKLFDFDVAT 68
L G Q+ + V+R +I +F PE++WT+ N G L+L+ +Q F
Sbjct: 187 LSAGRVQSVAVRLVVEREREIKAFVPEEYWTVAADTQTNAGVTLQLDVAKQAGKAFRPEN 246
Query: 69 MFQK----LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
Q V+Q EVI+ +K S T L + AS+ LGYG + M LA+R
Sbjct: 247 KAQTDAAVAVLQKASYEVIEREDKPSSSKAQAPFITSTLQQAASTRLGYGVKKTMMLAQR 306
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGY--AKPRS-GTDA 181
LY G I+Y RT+ST ++ AL DY+E+ Y +P S G+ A
Sbjct: 307 LYEAGHITYMRTDSTNL--------SVDALT---ACRDYIEQNFGTKYLPEQPLSYGSKA 355
Query: 182 G---DHPPITP-----MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
H I P + S+ +DM DA +LY + + F+ P +Y
Sbjct: 356 NAQEAHEAIRPSDVFVLASSLQDMEA-DARKLYELIWRQFVACQMPSAQY 404
>gi|426410419|ref|YP_007030518.1| DNA topoisomerase I [Pseudomonas sp. UW4]
gi|426268636|gb|AFY20713.1| DNA topoisomerase I [Pseudomonas sp. UW4]
Length = 875
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSVDAVAMARTYIEGEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|256829233|ref|YP_003157961.1| DNA topoisomerase III [Desulfomicrobium baculatum DSM 4028]
gi|256578409|gb|ACU89545.1| DNA topoisomerase III [Desulfomicrobium baculatum DSM 4028]
Length = 620
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 99/238 (41%), Gaps = 18/238 (7%)
Query: 1 MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW---- 56
+F ++ G QTP L V+R +I +F P +WT+ G K W
Sbjct: 178 LFTLRAGSLITVGRVQTPVLKLLVERRREIENFLPRDYWTVEGEFAHEGETFKATWFAAP 237
Query: 57 --ERQKLFDFDVA-TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGY 113
+ K++ + T+ Q +D V+++ +K+ + P + NL K A+S LG+
Sbjct: 238 DFKDSKIWQVEEGQTVVQACAGKDGA--VLEMEKKKGRQKPPLLFDLTNLQKEANSRLGF 295
Query: 114 GPQMAMQLAERLY-TQGFISYPRTESTAYPSSFDFRGTLSAL----ANNPVWGDYVERLL 168
Q + +A+ LY + I+YPRT+S Y + F L + A+ P +
Sbjct: 296 SAQQTLSIAQDLYEKRKLITYPRTDSR-YLTKELFAECLENMRAVYAHFPEISQSAAANI 354
Query: 169 AEGYAKPRSGTD--AGDHPPITPMR-SATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+ K D DH I P A LGK+ W +Y +C+ F D +
Sbjct: 355 KDAKKKFECVNDKKVSDHHAIIPTTLRANPATLGKEEWAIYEMICRRFAAAFMDDATF 412
>gi|398952499|ref|ZP_10674811.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM33]
gi|398155034|gb|EJM43491.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM33]
Length = 875
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSVDAVAMARTYIEGEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|398896734|ref|ZP_10647758.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM55]
gi|398177998|gb|EJM65658.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM55]
Length = 875
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSVDAVAMARTYIEGEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|398910900|ref|ZP_10655271.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM49]
gi|398184985|gb|EJM72408.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM49]
Length = 877
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSVDAVAMARTYIEGEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|163788498|ref|ZP_02182944.1| DNA topoisomerase III [Flavobacteriales bacterium ALC-1]
gi|159876818|gb|EDP70876.1| DNA topoisomerase III [Flavobacteriales bacterium ALC-1]
Length = 741
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 27/225 (12%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP------YLVQNGYELKLEWERQKLF 62
+L G QTPTL V R+ +I +FKP+ +W L + + G LK++
Sbjct: 186 VLSVGRVQTPTLAMLVNRFKEIENFKPQPYWELQTLYRDTLFSYEEGRFLKMQ------- 238
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D + K+ D E+ I++K+ ++ P + L ++ G+ +++A
Sbjct: 239 --DGEVLANKVKEHD--FEIASITKKKGTEYSPKLFDLTGLQVYCNTKFGFSADETLKIA 294
Query: 123 ERLYTQGFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLA---EGYAKPRS 177
++LY + ++YPR ++T P+ +G LS L + + ++ LL + AK +
Sbjct: 295 QKLYEKKAVTYPRVDTTFLPNDVYPKVKGILSKLTD---YSNFTSSLLNNKIKKSAKVFN 351
Query: 178 GTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
DH I P + + L + ++Y + + F+ DCK
Sbjct: 352 DKKVTDHHAIIP--TGMQTHLQYNEQQVYDIIVRRFIAVFYEDCK 394
>gi|90581227|ref|ZP_01237025.1| DNA topoisomerase I [Photobacterium angustum S14]
gi|90437598|gb|EAS62791.1| DNA topoisomerase I [Vibrio angustum S14]
Length = 884
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 24/228 (10%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDF---- 64
L G Q+ + V+R +I +F PE+FW +H + G + L+L +Q F
Sbjct: 197 LSAGRVQSVAVKLIVEREREINAFDPEEFWDIHADTLTVGKDALRLMVAQQAGKTFRPVN 256
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ TM K +++ EVID ++ S T L + AS+ LGYG + M LA+R
Sbjct: 257 EKDTMAAKALLEKAAYEVIDREDRPTSSKPSAPYITSTLQQAASTRLGYGVKRTMGLAQR 316
Query: 125 LYTQGFISYPRTEST-----AYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
LY G I+Y RT+ST A S+ +F G+ +GD A Y ++
Sbjct: 317 LYEAGHITYMRTDSTNLSKEAVESAREFIGS--------EYGDEYLPKAANVYGSKKNAQ 368
Query: 180 DAGDHPPITP----MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+A H I P M++ + + DA +LY + + F+ KY
Sbjct: 369 EA--HEAIRPSHVEMKAENLEGMEADAVKLYDLIWRQFVSCQMVPAKY 414
>gi|398872177|ref|ZP_10627480.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM74]
gi|398204049|gb|EJM90860.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM74]
Length = 875
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNETQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSVDAVAMARTYIEGEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|381158574|ref|ZP_09867807.1| topoisomerase IA [Thiorhodovibrio sp. 970]
gi|380879932|gb|EIC22023.1| topoisomerase IA [Thiorhodovibrio sp. 970]
Length = 901
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 14/228 (6%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKL--EWERQKLFDFD 65
++ G QTPTL V R I +F+ F+ L +L + G++ +L W D
Sbjct: 228 VLCTIGRVQTPTLAMIVARDAAIAAFEKAYFYELVAHL-REGFDARLCPNWPHDGETRID 286
Query: 66 VATMFQKLVMQ---DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
+KL Q + +V DI K+ + P + NL + A+ G+ ++LA
Sbjct: 287 DKAKAEKLREQLAPHQSGQVTDIQRKERRQRPPPLYDLTNLQRDANRHFGFTAAKTLELA 346
Query: 123 ERLYTQ-GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++LY Q ISYPRTES G L AL N+P+ ERL A G+ ++
Sbjct: 347 QQLYEQHKLISYPRTESRHISEDMLPQLPGILGAL-NHPLAPIAAERL-ATGHKLSKAYV 404
Query: 180 DAG---DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
D DH I P ++ L + R+Y VC F+ P+ + +
Sbjct: 405 DKTRLTDHHAILPTQTRAPASLPEPLQRIYDLVCARFVAVFLPEQRVL 452
>gi|441502271|ref|ZP_20984282.1| DNA topoisomerase I [Photobacterium sp. AK15]
gi|441430018|gb|ELR67469.1| DNA topoisomerase I [Photobacterium sp. AK15]
Length = 851
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 32/232 (13%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDF---- 64
L G Q+ + V+R +I +F PE++W +H + G + L+L +Q F
Sbjct: 167 LSAGRVQSVAVKLIVEREREIKAFTPEEYWDMHANTLTQGKDALRLMVSQQAGKAFRPVN 226
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ TM K ++++ +VID ++ S T L + AS+ LGYG + M LA+R
Sbjct: 227 ETETMAAKALLENAAYKVIDREDRPTSSKPSAPYITSTLQQAASTRLGYGVKRTMGLAQR 286
Query: 125 LYTQGFISYPRTEST-----AYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR--- 176
LY G+I+Y RT+ST A S+ +F + +Y E L AKP
Sbjct: 287 LYEAGYITYMRTDSTNLSKEAVESAREF-----------ITNEYGENYLP---AKPNTYG 332
Query: 177 SGTDAGD-HPPITP----MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
S +A + H I P +++ + + DA +LY + + F+ KY
Sbjct: 333 SKENAQEAHEAIRPSSVDVKAENLEGMDADAVKLYDLIWRQFVACQMVPAKY 384
>gi|447915863|ref|YP_007396431.1| DNA topoisomerase I subunit omega [Pseudomonas poae RE*1-1-14]
gi|445199726|gb|AGE24935.1| DNA topoisomerase I subunit omega [Pseudomonas poae RE*1-1-14]
Length = 873
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ E R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGNTVRFEVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + ++ + L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSQDAVAMARTYIESEFGKNYLPEKPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|85713094|ref|ZP_01044129.1| DNA topoisomerase I [Idiomarina baltica OS145]
gi|85693080|gb|EAQ31043.1| DNA topoisomerase I [Idiomarina baltica OS145]
Length = 872
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 26/229 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFDFDVAT 68
L G Q+ + V+R +I +F PE++W +H L Q +L+++ +Q +F A
Sbjct: 197 LSAGRVQSVAVRLVVEREREIKAFVPEEYWDVHADLATQAKDDLRMQVVKQAGENFRPAN 256
Query: 69 MFQKLV----MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
Q ++D E+I +K S T L + AS+ LG+G + M LA+R
Sbjct: 257 KEQTDAALAQLKDADYEIISREDKPTSSKPSAPFITSTLQQSASTRLGFGVKKTMTLAQR 316
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGY--AKP-RSGTDA 181
LY G I+Y RT+ST LSA A + DY+E+ Y +P R G+
Sbjct: 317 LYEAGHITYMRTDST----------NLSADAVSACR-DYIEQSFGANYLPKQPNRYGSKE 365
Query: 182 G---DHPPITPMRSATE-DMLG---KDAWRLYSYVCQHFLGTVSPDCKY 223
G H I P + D LG +DA RLY + + F+ KY
Sbjct: 366 GAQEAHEAIRPSDVKVKADKLGSMDRDAQRLYELIWRQFVACQMVPAKY 414
>gi|359446052|ref|ZP_09235759.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20439]
gi|358040145|dbj|GAA72008.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20439]
Length = 902
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V L G Q+ + V+R +I +F PE+FW +H + + +L+LE +Q
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNSESDLRLEVTKQADKP 253
Query: 64 FDVATMFQKLV----MQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F Q +++ +V+ + EK SK RP T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQASAAVKSLENAEYKVVSVEEKP-SKSRPSAPFITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|398876391|ref|ZP_10631548.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM67]
gi|398204796|gb|EJM91592.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM67]
Length = 875
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + +A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSADAVTMARTYIEGEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|187933094|ref|YP_001885882.1| DNA topoisomerase III [Clostridium botulinum B str. Eklund 17B]
gi|187721247|gb|ACD22468.1| DNA topoisomerase III [Clostridium botulinum B str. Eklund 17B]
Length = 729
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 23/226 (10%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE----RQKLFDFDVAT 68
G Q+PTL VQR I +FKP+ ++T ++ L +EW +++D ++A
Sbjct: 189 GRVQSPTLAMIVQREEDIKNFKPKDYYT----IIAKNNNLAMEWSSNDNNNRIYDNELA- 243
Query: 69 MFQKLV--MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+KL+ ++ + EV +ISE + + P + L + A+ GY + + + +RLY
Sbjct: 244 --KKLIAGLKGKEGEVSEISESNKKQYSPALYDLTELQRDANRIFGYSAKQTLSIMQRLY 301
Query: 127 TQ-GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDY---VERLLAEGYAKPRSGTD-- 180
++YPRT+S + D TL G+Y ++L +S D
Sbjct: 302 ENYKILTYPRTDSRYI--TRDIVPTLKERLKAISVGNYSSSANQILKGTIHSSKSFVDDS 359
Query: 181 -AGDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
DH I P + + ML K+ +Y V + FL + P +YI
Sbjct: 360 KVSDHHAIIPTEQKVSLGMLSKEEKNIYDLVIKRFLSVLLPPFEYI 405
>gi|108803595|ref|YP_643532.1| DNA topoisomerase III [Rubrobacter xylanophilus DSM 9941]
gi|108764838|gb|ABG03720.1| DNA topoisomerase III [Rubrobacter xylanophilus DSM 9941]
Length = 701
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 13/226 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G QTPTL V+R +I F+PE+F+T+H ++G W R+K
Sbjct: 186 VLSVGRVQTPTLRLLVEREREIEDFRPERFFTVHARFARDGKTYDGLWFREKESRLKERE 245
Query: 69 MFQKLVMQDR-ILEVIDISEKQESKVRPCGL-NTVNLLKVASSALGYGPQMAMQLAERLY 126
+++ + R V+ +E++ + RP L + L + A++ G+ + ++ A+ LY
Sbjct: 246 AAEQIAEKVRGGTGVVKKAERRRTSERPPLLYDLTELQRNANARYGFTAERTLRAAQALY 305
Query: 127 TQ-GFISYPRTESTAYPSSFDFRGTL----SALANNPVWGDYVERLLAEGY----AKPRS 177
+ I+YPRT S+ Y S D GTL A P + RLLA G +
Sbjct: 306 EERKLITYPRT-SSRYLSG-DMVGTLKRRVEAAGGLPELAPFAGRLLAAGSLPVGRRVVD 363
Query: 178 GTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+ DH I P L D ++Y V + FL P ++
Sbjct: 364 DSKVTDHHAIVPTDRKPSGGLPPDEAKVYDLVARRFLAVFFPAARF 409
>gi|398797369|ref|ZP_10556691.1| DNA topoisomerase III [Pantoea sp. GM01]
gi|398102923|gb|EJL93097.1| DNA topoisomerase III [Pantoea sp. GM01]
Length = 688
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 13/224 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQK 60
+ G QTPTL V R L+I F P+ +W + L ++G + EW + ++
Sbjct: 187 VFSVGRVQTPTLAIVVNRDLEIAGFTPKPWWKVRAQLEKDGVRFEAEWVAAEQYCDDEKR 246
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
+ +A Q+L ++ VI + +K+ P + NL + + G+G +
Sbjct: 247 CVNQQIAQAVQQLCLKAGNGSVISVEKKRAKTPAPLCFSLGNLQEACNRKWGFGANEVLS 306
Query: 121 LAERLY-TQGFISYPRTESTAYPSSF--DFRGTLSALAN-NPVWGDYVERLLAEGYAKPR 176
+A+ LY T +YPRT+ P S + L A+ + +P G + RL ++
Sbjct: 307 IAQSLYETHKATTYPRTDCGYLPVSMREEVNDVLQAVQHSDPAIGSELSRLDTAFTSRVW 366
Query: 177 SGTDAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
+ H I P R + L ++YS + H+L P
Sbjct: 367 NDKKITAHHAIIPTRQPFDIAKLNAKELKVYSLIRLHYLAQFMP 410
>gi|339481941|ref|YP_004693727.1| DNA topoisomerase III [Nitrosomonas sp. Is79A3]
gi|338804086|gb|AEJ00328.1| DNA topoisomerase III [Nitrosomonas sp. Is79A3]
Length = 836
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 21/231 (9%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQ- 71
G QTPTL V+R +I F+P+ +W +H + +W +K V +
Sbjct: 194 GRVQTPTLAILVEREEKIKKFRPQDYWEIHATFAASNGNYNGKWFDEKFSKDKVNQELKP 253
Query: 72 KLVMQDRILEVI---------DISEKQESKVRPCGL--NTVNLLKVASSALGYGPQMAMQ 120
+ + + + EVI ++E+ + C L + +L + A+S G+ + +
Sbjct: 254 ERLWEQKKAEVIRDKCQGKPGQVNEESKPSKEICPLLYDLTSLQREANSRFGFSAKTTLG 313
Query: 121 LAERLYTQ-GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPR- 176
LA+ LY + ++YPRT+S A P + + T+ +L N +G + +++LA + P
Sbjct: 314 LAQALYEKHKVLTYPRTDSRALPEDYIATVKDTVQSLGNTD-YGKFAQQILASNWVIPNK 372
Query: 177 ---SGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
+ DH I P S L + ++Y V + FL P +++
Sbjct: 373 RIFNNAKISDHFAIIPT-SLNPAKLNEAEAKIYDLVTKRFLAIFFPAAEFL 422
>gi|398846068|ref|ZP_10603069.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM84]
gi|398252937|gb|EJN38093.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM84]
Length = 870
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 28/231 (12%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVAT 68
L G Q+ + V+R +I +F PE++W +H L +++ E R+K F
Sbjct: 198 LSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKNAQVRFEVAREKGEAFKPLN 257
Query: 69 MFQKLV----MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
Q + ++D VI ++ S T L + AS+ LG+G + M +A+R
Sbjct: 258 EAQAMAALEKLKDSSYSVIKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQR 317
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRS----GTD 180
LY G+I+Y RT+ST LSA A + + Y+ER + Y P + G+
Sbjct: 318 LYEAGYITYMRTDST----------NLSADALD-MARSYIEREFGKQYL-PEAPLVYGSK 365
Query: 181 AG---DHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
G H I P T + +DA RLY + + FL P +Y+
Sbjct: 366 EGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYL 416
>gi|188587719|ref|YP_001920930.1| DNA topoisomerase III [Clostridium botulinum E3 str. Alaska E43]
gi|188498000|gb|ACD51136.1| DNA topoisomerase III [Clostridium botulinum E3 str. Alaska E43]
Length = 730
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 24/227 (10%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE-----RQKLFDFDVA 67
G Q+PTL VQR I +FKP+ ++T ++ L +EW +++D D+A
Sbjct: 189 GRVQSPTLAMIVQREEDIKNFKPKDYYT----IIAKNNNLAMEWSSNDNNNNRIYDNDIA 244
Query: 68 TMFQKLV--MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+KL+ ++ + EV +ISE + + P + L + A+ GY + + + +RL
Sbjct: 245 ---KKLIAGLKGKEGEVSEISESNKKQYSPALYDLTELQRDANRIFGYSAKQTLSIMQRL 301
Query: 126 YTQ-GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDY---VERLLAEGYAKPRSGTD- 180
Y ++YPRT+S + D TL G+Y ++L +S D
Sbjct: 302 YENYKILTYPRTDSRYI--TRDIVPTLKERLKAISVGNYSSSANQILKGTIHGSKSFVDD 359
Query: 181 --AGDHPPITPM-RSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
DH I P + + +L K+ +Y V + FL + P +YI
Sbjct: 360 SKVSDHHAIIPTEQKVSLGILSKEEKNIYDLVIKRFLSVLLPPFEYI 406
>gi|302792441|ref|XP_002977986.1| hypothetical protein SELMODRAFT_417843 [Selaginella moellendorffii]
gi|300154007|gb|EFJ20643.1| hypothetical protein SELMODRAFT_417843 [Selaginella moellendorffii]
Length = 408
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 7/80 (8%)
Query: 27 YLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDIS 86
+ QI + P+ FWTL+P L + G+ L++ WER +F+ Q ++ L+V+D+S
Sbjct: 94 HTQIITLVPKPFWTLYPRLSKGGHSLQVGWERGSVFE-------QAKALKSGSLKVLDVS 146
Query: 87 EKQESKVRPCGLNTVNLLKV 106
+++E K RP GLNTVN+LK+
Sbjct: 147 QREELKARPTGLNTVNMLKL 166
>gi|146300044|ref|YP_001194635.1| DNA topoisomerase III [Flavobacterium johnsoniae UW101]
gi|146154462|gb|ABQ05316.1| DNA topoisomerase III [Flavobacterium johnsoniae UW101]
Length = 768
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 29/225 (12%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G QTPTL V R+ +I +FKP+ +W L R+ LF ++
Sbjct: 186 VLSIGRVQTPTLAMVVDRFKEIENFKPQPYWELQTLY------------RETLFSYEEGR 233
Query: 69 MFQK---LVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+K ++ +++ E++ + +K ++ P + L + G+ + +++
Sbjct: 234 FLKKEDGEILAEKVKESDFEIVSVDKKNGNEYAPKLFDLTGLQVYCNQKFGFSAEETLKI 293
Query: 122 AERLYTQGFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAK-PRSG 178
A+ LY Q I+YPR ++T P G L L N + E LL + K P+
Sbjct: 294 AQTLYEQKAITYPRVDTTFLPGDIYPKVPGILQKLTN---YSHLTEPLLGKKIKKSPKVF 350
Query: 179 TDAG--DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
D DH I P + E L + ++Y + + FL DC
Sbjct: 351 NDKKVTDHHAIIP--TGIEINLPYNQQQVYDIIVKRFLAVFYDDC 393
>gi|319954761|ref|YP_004166028.1| DNA topoisomerase iii [Cellulophaga algicola DSM 14237]
gi|319423421|gb|ADV50530.1| DNA topoisomerase III [Cellulophaga algicola DSM 14237]
Length = 773
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 9/215 (4%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G QTPTL V RY +I SFK E +W L + E+ + +
Sbjct: 186 MLSVGRVQTPTLAMIVNRYKEIESFKSEPYWELQTLYRDTLFNC----EKGRFLKKEEGE 241
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
F K V ++ E++ I++K+ + P + L ++ G+ +++ ++LY Q
Sbjct: 242 AFAKQV-KESDFEIVSITKKKGKEYAPKLFDLTGLQVYCNTKFGFSADETLKMVQKLYEQ 300
Query: 129 GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPP 186
++YPR ++T P+ G L L V + +K + DH
Sbjct: 301 KVVTYPRVDTTFLPNDVYPKVPGILKKLTKYQNLTTAVLAGKIKKSSKVFNDKKVTDHHA 360
Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
I P + + L + ++Y + + F+G PDC
Sbjct: 361 IIP--TGVQMNLQLNQQKVYDIITKRFIGVFYPDC 393
>gi|398883770|ref|ZP_10638719.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM60]
gi|398196154|gb|EJM83171.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM60]
Length = 875
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFRPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + +A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSADAVTMARTYIEGEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|399911463|ref|ZP_10779777.1| DNA topoisomerase I subunit omega [Halomonas sp. KM-1]
Length = 875
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 16/231 (6%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE+FW +H LV + G ++ E RQ
Sbjct: 197 AKIARGLSAGRVQSVAVRLIVEREREIRAFVPEEFWDVHADLVSSEGEPVRFELVRQDGK 256
Query: 63 DFDVATMFQKLVMQDRILEV---IDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F T + L + + + I E + ++ +P T L + AS LG+ +
Sbjct: 257 AFRPTTEAETLTRIEALRKASLAITAREDKPTRSKPGAPFITSTLQQAASGRLGFSVKKT 316
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG 178
M LA+RLY G+I+Y RT+ST + A+ + +Y +R L E + S
Sbjct: 317 MTLAQRLYEAGYITYMRTDST------NLSQDAVAMVREHIEQEYGKRYLPESPNRYSSK 370
Query: 179 TDAGD-HPPITP--MRSATEDMLG--KDAWRLYSYVCQHFLGTVSPDCKYI 224
A + H I P + D+ G +DA RLY + + F+ +Y+
Sbjct: 371 EGAQEAHEAIRPSDVNRKAGDLAGMERDAERLYELIWRQFVACQMTPAEYL 421
>gi|219870474|ref|YP_002474849.1| DNA topoisomerase I [Haemophilus parasuis SH0165]
gi|219690678|gb|ACL31901.1| DNA topoisomerase I [Haemophilus parasuis SH0165]
Length = 870
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 19/217 (8%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+ + V+R +I +F+PE+FW + +L LE + K F V
Sbjct: 200 LSAGRVQSVAVKLLVEREREIKAFQPEEFWDILAKTSAKKGDLALELVQHKGKKFSVKNQ 259
Query: 70 FQK----LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ +Q+ V +I +K S T L + AS+ LG+ + M LA+RL
Sbjct: 260 KEAEQAVKSLQNSAFIVTEIDKKPTSSRAKAPFITSTLQQTASTRLGFSVKKTMMLAQRL 319
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKPRSGTDAG 182
Y G+I+Y RT+ST + +A + + + +R L E YA +A
Sbjct: 320 YEAGYITYMRTDST------NLSQDALTMARSYIEKQFGDRYLPEKPNFYASKEKAQEA- 372
Query: 183 DHPPITP--MRSATEDMLG--KDAWRLYSYVCQHFLG 215
H I P + +D+ G KDA RLY + + FL
Sbjct: 373 -HEAIRPSDVMVKMQDLSGMEKDAERLYDLIWRQFLA 408
>gi|423238612|ref|ZP_17219728.1| DNA topoisomerase III [Bacteroides dorei CL03T12C01]
gi|392648295|gb|EIY41985.1| DNA topoisomerase III [Bacteroides dorei CL03T12C01]
Length = 699
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL RYL+ +FKP ++ L + G E + +K + A +
Sbjct: 195 GRVQTPTLAIICSRYLENKAFKPATYFRLKLSTAKEGTEFTV-LSTEKFDGREKAEAARA 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V+ R + V+++ K+ + P + L K A+S G+ + + +A+ LY + FI+
Sbjct: 254 EVIGARTVRVVNVERKETREQPPLLYDLTTLQKEANSRYGFSAEKTLDIAQSLYEKKFIT 313
Query: 133 YPRTESTAYPSSFDFRGTLSALANN----PVWGDYVERLLAEGYAKPRSGTDA-GDHPPI 187
YPRT S S D + AL N P + +Y R+ ++ + DH +
Sbjct: 314 YPRTGSRYI--SEDVAEEIPALIGNMTRYPRFAEYASRMDTASLSRRSVDNEKIADHHAL 371
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P + + L D +Y V L T S C
Sbjct: 372 LPTENLPSE-LDADHRIVYEMVAGRMLETFSGAC 404
>gi|337283960|ref|YP_004623434.1| DNA topoisomerase I [Pyrococcus yayanosii CH1]
gi|334899894|gb|AEH24162.1| DNA topoisomerase I [Pyrococcus yayanosii CH1]
Length = 1156
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 9/131 (6%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
++L G Q PTL F V R +I +F P+ +W + L +NG +L +E+ K++D + A
Sbjct: 193 VVLSTGRVQGPTLKFLVDREREIQNFVPKPYWIIKLILEKNGRKLTATYEKDKVWDEEEA 252
Query: 68 TMFQKLVMQDR----ILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
+++V + R I+E ID+ Q + P L T L + A SA GY P+ + +A+
Sbjct: 253 ---KRIVQEARKGYAIVENIDVRRLQRNPPVPFDLGT--LQREAYSAFGYSPKKTLDIAQ 307
Query: 124 RLYTQGFISYP 134
LY +G+ +P
Sbjct: 308 SLYEKGYCLHP 318
>gi|393788715|ref|ZP_10376842.1| DNA topoisomerase III [Bacteroides nordii CL02T12C05]
gi|392654395|gb|EIY48043.1| DNA topoisomerase III [Bacteroides nordii CL02T12C05]
Length = 699
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL RYL+ +FKP ++ L + G E + +K + A +
Sbjct: 195 GRVQTPTLAIICSRYLENKAFKPATYFRLKLSTAKEGTEFTV-LSTEKFDGREKAEAARA 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V+ R + V+++ K+ + P + L K A+S G+ + + +A+ LY + FI+
Sbjct: 254 EVIGARTVRVVNVERKETREQPPLLYDLTTLQKEANSRYGFSAEKTLDIAQSLYEKKFIT 313
Query: 133 YPRTESTAYPSSFDFRGTLSALANN----PVWGDYVERLLAEGYAKPRSGTDA-GDHPPI 187
YPRT S S D + AL N P + +Y R+ ++ + DH +
Sbjct: 314 YPRTGSRYI--SEDVAEEIPALIGNMTRYPRFAEYASRMDTASLSRRSVDNEKIADHHAL 371
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P + + L D +Y V L T S C
Sbjct: 372 LPTENLPSE-LDADHRIVYEMVAGRMLETFSGAC 404
>gi|332797017|ref|YP_004458517.1| DNA topoisomerase I [Acidianus hospitalis W1]
gi|332694752|gb|AEE94219.1| DNA topoisomerase I [Acidianus hospitalis W1]
Length = 602
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 8/219 (3%)
Query: 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDV 66
++IL G Q+PTL V+R+L +F P ++ + ++ G + + Q+ + D
Sbjct: 134 SVILSAGRVQSPTLIEVVKRHLDRETFVPLPYFKIE-LKIRLGNIINTVYLDQEFHNIDD 192
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
+ +D+++ +I K + +RP N +L A G P ++ E LY
Sbjct: 193 VESLITRLKKDKLIVDKNILNKDKI-IRPPPFNLGDLQLEAGRLFGLSPYRTERVGEELY 251
Query: 127 TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVE--RLLAEGYAKPRSGT-DAGD 183
G ISYPRT S P + + ++ L+ +G V+ L+ +G R G D
Sbjct: 252 LDGVISYPRTNSQKIPPTININEIVTGLSQR--FGKLVDELNLMTKGKFIVRQGNKDDPA 309
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HP I P LGK +Y + + FL ++S D +
Sbjct: 310 HPAIYPT-GVIPKKLGKQESEVYELIVRRFLASISRDAE 347
>gi|398994044|ref|ZP_10696971.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM21]
gi|398133285|gb|EJM22499.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM21]
Length = 875
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ + R+
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGATVRFDVARENGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNETQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + +A + G++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSADAVTMARTYIEGEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|56420223|ref|YP_147541.1| DNA topoisomerase III [Geobacillus kaustophilus HTA426]
gi|56380065|dbj|BAD75973.1| DNA topoisomerase III [Geobacillus kaustophilus HTA426]
Length = 697
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 14/219 (6%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWER---QKLFDFDV 66
L G QTPTL ++R +I SF P +WT+ + + WER +LFD D
Sbjct: 185 LSAGRVQTPTLAMIIEREREIQSFVPVPYWTIRAKI----GSITAVWERHGGHRLFDQDE 240
Query: 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY 126
A ++ + V I K++S+ P + L + A+ G+ + + + +RLY
Sbjct: 241 ANRLM-TRLKGQPARVTSIKRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRLY 299
Query: 127 TQ-GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR----SGTDA 181
Q ++YPRT+S PS + T LA + D + LLA+G AK +
Sbjct: 300 EQHKLVTYPRTDSRYLPSDMEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFNDDKV 359
Query: 182 GDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
DH I P L D +LY + + FL P
Sbjct: 360 TDHHAIVPTDERLNLSRLSTDERKLYDLIARRFLALFYP 398
>gi|167854756|ref|ZP_02477535.1| DNA topoisomerase I [Haemophilus parasuis 29755]
gi|167854170|gb|EDS25405.1| DNA topoisomerase I [Haemophilus parasuis 29755]
Length = 870
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+ + V+R +I +F+PE+FW + +L LE + K F
Sbjct: 200 LSAGRVQSVAVKLLVEREREIKAFQPEEFWDILAKTSAKKGDLALELVQHKGKKFSAKNQ 259
Query: 70 FQK----LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+ +Q+ V +I +K S T L + AS+ LG+ + M LA+RL
Sbjct: 260 KEAEQAVKSLQNSAFIVTEIDKKPTSSRAKAPFITSTLQQTASTRLGFSVKKTMMLAQRL 319
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKPRSGTDAG 182
Y G+I+Y RT+ST + +A + + + ER L E YA +A
Sbjct: 320 YEAGYITYMRTDST------NLSQDALTMARSYIEKQFGERYLPEKPNFYASKEKAQEA- 372
Query: 183 DHPPITP--MRSATEDMLG--KDAWRLYSYVCQHFLG 215
H I P + +D+ G KDA RLY + + FL
Sbjct: 373 -HEAIRPSDVMVKMQDLSGMEKDAERLYDLIWRQFLA 408
>gi|383123663|ref|ZP_09944341.1| DNA topoisomerase III [Bacteroides sp. 1_1_6]
gi|382983933|gb|EES67866.2| DNA topoisomerase III [Bacteroides sp. 1_1_6]
Length = 634
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 15/217 (6%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG----YELKLEWERQKLFDFDVAT 68
G QTPTL +RYL+ F P + L + ++G + L++ER++ D
Sbjct: 139 GRVQTPTLALVCRRYLENRDFVPVNCYHLQTGVCKDGQKVLFTCPLQYERKE----DAEK 194
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+L + R V+ + +K+ + P + L + A++ LG + + +RLY +
Sbjct: 195 ARSRLEGESRCT-VLAVKKKENMEDPPLPHDLTGLQQEANTRLGMAAGQTLAVVQRLYER 253
Query: 129 GFISYPRTESTAYPSS-FDFRGTLSA-LANNPVWGDYVERLLAEGYAKPRS--GTDAGDH 184
G++SYPRT P F+ TL A L +P +G + ERLL +G P + G +H
Sbjct: 254 GYVSYPRTGCCHIPEDIFEQAPTLVASLKGHPRFGRHAERLLEKGL-NPHAVDGNSVTEH 312
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ + + L D +YS + L S C
Sbjct: 313 HALL-ITGEVPEGLSPDEQNIYSLIAGRMLEAFSEGC 348
>gi|423096324|ref|ZP_17084120.1| DNA topoisomerase I [Pseudomonas fluorescens Q2-87]
gi|397885757|gb|EJL02240.1| DNA topoisomerase I [Pseudomonas fluorescens Q2-87]
Length = 870
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ + R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGATVRFDVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + ++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSADAVAMARTYIESEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + TE + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLA 407
>gi|410683254|ref|YP_006940323.1| DNA topoisomerase III [Erwinia amylovora ACW56400]
gi|410688905|ref|YP_006962438.1| DNA topoisomerase III in PFGI-1-like cluster [Erwinia amylovora]
gi|366040028|gb|AEX08405.1| DNA topoisomerase III [Erwinia amylovora ACW56400]
gi|385268414|gb|AFI56276.1| DNA topoisomerase III in PFGI-1-like cluster [Erwinia amylovora]
Length = 688
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 13/229 (5%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW------- 56
A V+ + G QTPTL V R L+I F P+ +W + L ++ + EW
Sbjct: 182 AGVSEVFSVGRVQTPTLAIVVNRDLEIAGFTPKPWWKVRAQLQKDDVSFEAEWVAAAQYC 241
Query: 57 -ERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGP 115
+ ++ + +A Q+L + VI + +K++ P L++V + G+G
Sbjct: 242 DDEKRCVNHPIAQAVQQLCQKAGSGSVISVEKKRDKTPAPLCFTLGTLMEVCNKKWGFGA 301
Query: 116 QMAMQLAERLY-TQGFISYPRTESTAYPSSF--DFRGTLSALAN-NPVWGDYVERLLAEG 171
+ +A+ LY T +YPRT+ P S + R L A+ + +P + RL
Sbjct: 302 NEVLSIAQSLYETHKATTYPRTDCGYLPVSMREEVRDVLQAIQHSDPSITPELARLDTAF 361
Query: 172 YAKPRSGTDAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
++ + H I P R E L ++YS + H+L P
Sbjct: 362 TSRVWNDKKITAHHAIIPTRQPFEIAKLNAKELKVYSLIRLHYLAQFMP 410
>gi|300781894|ref|YP_003739129.1| DNA topoisomerase [Erwinia billingiae Eb661]
gi|299060160|emb|CAX53350.1| DNA topoisomerase [Erwinia billingiae Eb661]
Length = 688
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 13/229 (5%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW------- 56
A V+ + G QTPTL V R L+I F P+ +W + L ++ + EW
Sbjct: 182 AGVSEVFSVGRVQTPTLAIVVNRDLEIAGFTPKPWWKVRAQLQKDDVSFEAEWVAAAQYC 241
Query: 57 -ERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGP 115
+ ++ + +A Q+L + VI + +K++ P L++V + G+G
Sbjct: 242 DDEKRCVNHPIAQAVQQLCQKAGSGSVISVEKKRDKTPAPLCFTLGTLMEVCNKKWGFGA 301
Query: 116 QMAMQLAERLY-TQGFISYPRTESTAYPSSF--DFRGTLSALAN-NPVWGDYVERLLAEG 171
+ +A+ LY T +YPRT+ P S + R L A+ + +P + RL
Sbjct: 302 NEVLSIAQSLYETHKATTYPRTDCGYLPVSMREEVRDVLQAIQHSDPSITPELARLDTAF 361
Query: 172 YAKPRSGTDAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
++ + H I P R E L ++YS + H+L P
Sbjct: 362 TSRVWNDKKITAHHAIIPTRQPFEIAKLNAKELKVYSLIRLHYLAQFMP 410
>gi|325953952|ref|YP_004237612.1| DNA topoisomerase III [Weeksella virosa DSM 16922]
gi|323436570|gb|ADX67034.1| DNA topoisomerase III [Weeksella virosa DSM 16922]
Length = 696
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 26/224 (11%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGY-----ELKLEWERQKLFD 63
+L G QTPTL V+R +I SF E++W L + + LK + + +K +
Sbjct: 186 VLSIGRVQTPTLAMIVERQKEIDSFVIEEYWELKTLYKETEFIATIDRLKTKEKAEKGLE 245
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKV-ASSALGYGPQMAMQLA 122
+ ++ LE+I E +E K +P L + L+V A+ L Y + ++
Sbjct: 246 Y----------LKQFPLEIIAF-ETKEGKEKPPRLFDLTSLQVEANKKLAYSAENTLKYV 294
Query: 123 ERLYTQGFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRS--- 177
+ LY + ++YPR ++T G L L + Y LL + AK ++
Sbjct: 295 QSLYEKKMVTYPRVDTTYLSEDLHPKIEGILQKLT---PYATYTASLLEKPIAKSKNIFD 351
Query: 178 GTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
+ DH I P + + D L D ++Y +C+ F+ PDC
Sbjct: 352 NSKVTDHHAIIPTGNFSSD-LTIDEKKIYDMICRRFISVFYPDC 394
>gi|409408450|ref|ZP_11256885.1| DNA topoisomerase III protein [Herbaspirillum sp. GW103]
gi|386431772|gb|EIJ44600.1| DNA topoisomerase III protein [Herbaspirillum sp. GW103]
Length = 883
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 20/230 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--ERQKLFDFDVATMF 70
G QTPTL V+R +I F P +W +H V K W + K + D
Sbjct: 194 GRVQTPTLSIVVEREEKIKKFVPRDYWEVHAEFVCAAGIYKGRWLDKGHKKDEADPEKRP 253
Query: 71 QKL---VMQDRILEVI-----DISE--KQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++L D I+ +++E K +++ P + +L + A+S G+ + +
Sbjct: 254 ERLWSKAAADSIVAACRDKPGNVTEESKPTTQMSPGLFDLTSLQREANSRFGFSAKNTLG 313
Query: 121 LAERLYTQ-GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPR- 176
LA+ LY + ++YPRT+S P + + T+ ALA N + + +++L +G+ KP
Sbjct: 314 LAQALYEKHKVLTYPRTDSRHLPEDYINTVKDTMEALAENNNYHQFSKQILKQGWVKPNK 373
Query: 177 ---SGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
T DH I P ++ L + +LY V + F+ P ++
Sbjct: 374 RIFDNTKISDHFAIIPTTQVPKN-LSEPEQKLYDLVTRRFMAVFFPPAEF 422
>gi|300313959|ref|YP_003778051.1| DNA topoisomerase III protein [Herbaspirillum seropedicae SmR1]
gi|300076744|gb|ADJ66143.1| DNA topoisomerase III protein [Herbaspirillum seropedicae SmR1]
Length = 892
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 20/230 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--ERQKLFDFDVATMF 70
G QTPTL V+R +I F P +W +H V K W + K + D
Sbjct: 194 GRVQTPTLSIVVEREEKIKKFVPRDYWEVHAEFVCAAGIYKGRWLDKGHKKDEADPEKRP 253
Query: 71 QKL---VMQDRILEVI-----DISE--KQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++L D I+ +++E K +++ P + +L + A+S G+ + +
Sbjct: 254 ERLWSKAAADSIVAACRDKPGNVTEESKPTTQMSPGLFDLTSLQREANSRFGFSAKNTLG 313
Query: 121 LAERLYTQ-GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRS 177
LA+ LY + ++YPRT+S P + + T+ ALA N + + +++L +G+ KP
Sbjct: 314 LAQALYEKHKVLTYPRTDSRHLPEDYINTVKDTMEALAENNNYHQFSKQILKQGWVKPNK 373
Query: 178 ----GTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
T DH I P ++ L + +LY V + F+ P ++
Sbjct: 374 RIFDNTKISDHFAIIPTTQVPKN-LSEPEQKLYDLVTRRFMAVFFPPAEF 422
>gi|359437460|ref|ZP_09227523.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20311]
gi|358027859|dbj|GAA63772.1| DNA topoisomerase I [Pseudoalteromonas sp. BSi20311]
Length = 902
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFD 63
A V L G Q+ + V+R +I +F PE+FW +H + + +L+LE +Q
Sbjct: 194 AKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNSESDLRLEVTKQAGKP 253
Query: 64 FDVATMFQKL----VMQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMA 118
F Q ++ +V+ + EK SK RP T + + AS+ LGYG +
Sbjct: 254 FKPVNEAQATEAVKSLESAEYKVVSVEEKP-SKSRPSAPFITSTMQQAASTRLGYGVKKT 312
Query: 119 MQLAERLYTQGFISYPRTEST 139
M LA+RLY G+I+Y RT+ST
Sbjct: 313 MMLAQRLYEGGYITYMRTDST 333
>gi|448237916|ref|YP_007401974.1| DNA topoisomerase III [Geobacillus sp. GHH01]
gi|445206758|gb|AGE22223.1| DNA topoisomerase III [Geobacillus sp. GHH01]
Length = 697
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWER---QKLFDFDV 66
L G QTPTL ++R +I SF P +WT+ + + WER +LFD D
Sbjct: 185 LSAGRVQTPTLAMIIEREREIQSFVPVPYWTIRAKI----GSITAVWERHGGHRLFDQDE 240
Query: 67 AT-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + +L Q V+ + K++S+ P + L + A+ G+ + + + +RL
Sbjct: 241 AKQLLARLDGQP--ARVVSVKRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRL 298
Query: 126 YTQ-GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR----SGTD 180
Y Q ++YPRT+S PS + T LA + D + LLA+G AK +
Sbjct: 299 YEQHKLVTYPRTDSRYLPSDMEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFNDDK 358
Query: 181 AGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
DH I P L D +LY + + FL P
Sbjct: 359 VTDHHAIVPTDERLNLSRLSTDERKLYDLIARRFLALFFP 398
>gi|423219107|ref|ZP_17205603.1| DNA topoisomerase III [Bacteroides caccae CL03T12C61]
gi|392625873|gb|EIY19929.1| DNA topoisomerase III [Bacteroides caccae CL03T12C61]
Length = 699
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL RYL+ +FKP ++ L + G E + +K + A +
Sbjct: 195 GRVQTPTLAIICSRYLENKAFKPAAYFRLKLSTAKEGTEFTV-LSTEKFDGREKAEAARA 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V+ R + V+++ K+ + P + L K A+S G+ + + +A+ LY + FI+
Sbjct: 254 EVIGARTVRVVNVERKEAREQPPLLYDLTTLQKEANSRYGFSAEKTLDIAQSLYEKKFIT 313
Query: 133 YPRTESTAYPSSFDFRGTLSALANN----PVWGDYVERLLAEGYAKPRSGTDA-GDHPPI 187
YPRT S S D + AL N P + +Y R+ ++ + DH +
Sbjct: 314 YPRTGSRYI--SEDVAEEIPALIGNMTRYPRFAEYAGRMDTASLSRRSVDNEKIADHHAL 371
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P + + L D +Y V L T S C
Sbjct: 372 LPTENLPSE-LDADHRIVYEMVAGRMLETFSGAC 404
>gi|253744105|gb|EET00358.1| DNA topoisomerase III [Giardia intestinalis ATCC 50581]
Length = 893
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 108/267 (40%), Gaps = 59/267 (22%)
Query: 12 YGPCQTPTLGFCVQ------RYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD 65
+GPCQ PTLG R Q +SF HP +G K KL+D
Sbjct: 253 FGPCQVPTLGLVHSNDLLSLRNHQSSSFALHFVCNPHPLQASSGSVFKELANALKLWDSK 312
Query: 66 -------------------------------VATMFQKLVMQDRILEVIDISEKQESKVR 94
+ ++F L Q R + V I EK + R
Sbjct: 313 PNKREQAEPRGLVFTPADTSHFRSYLGCLPMLKSVFDTLQKQKREIVVSAIEEKPYTIHR 372
Query: 95 PCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFD---FRGTL 151
P ++T+++ + S + Q M AE LYT+G ISYPRTE+ +YPS++ F+
Sbjct: 373 PYPISTLDMQRALSGH--FSSQNIMAAAEALYTRGLISYPRTETKSYPSTYTISYFKQIT 430
Query: 152 SALAN-NP-------VWGDYVERLLAEGYAK------PRSGTDAGD--HPPITPMRSATE 195
LA+ +P +Y LL + PRS + D H PI P+ +
Sbjct: 431 DKLAHMSPNISVSCASLAEYAHTLLDDSPGNPYKLQLPRSTSMCSDNAHLPIHPL-ACPP 489
Query: 196 DMLGKDAWRLYSYVCQHFLGTVSPDCK 222
L + +Y +V + FL +VSPD +
Sbjct: 490 CSLTRCEELVYDHVARSFLASVSPDAR 516
>gi|431799126|ref|YP_007226030.1| DNA topoisomerase III [Echinicola vietnamensis DSM 17526]
gi|430789891|gb|AGA80020.1| DNA topoisomerase III [Echinicola vietnamensis DSM 17526]
Length = 780
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 15/219 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G QTPTL V R+ +I FKPE +W L + E + L D
Sbjct: 186 VLSIGRVQTPTLAMLVNRHQEIEQFKPEPYWELQTTYRDTTFH---STEGKFLKKEDGEA 242
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ ++ +D + ID E +E P + +L ++ ++ +RLY
Sbjct: 243 LLGQITGKDLFITAIDQKEGKE--YAPKLFDLTSLQVYCNNKFNLTADNTLKTVQRLYEL 300
Query: 129 GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAK-PRSGTDAG--D 183
++YPR ++T P+ G L L + + LLA+ K P+ D D
Sbjct: 301 KVVTYPRVDTTFLPNDMYPKISGILKGLGQ---YHSFTAPLLAKKIRKSPKVFNDKKVTD 357
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
H I P + E LG ++Y + + FL PDCK
Sbjct: 358 HHAIIP--TGEEKQLGHTEQKVYDIIVRRFLAAFYPDCK 394
>gi|291515141|emb|CBK64351.1| DNA topoisomerase III, bacteria and conjugative plasmid [Alistipes
shahii WAL 8301]
Length = 699
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL RYL+ +FKP ++ L + G E + +K + A +
Sbjct: 195 GRVQTPTLAIICSRYLENKAFKPAAYFRLKLSTAKEGTEFTV-LSTEKFDGREKAEAARA 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V+ R + V+++ K+ + P + L K A+S G+ + + +A+ LY + FI+
Sbjct: 254 EVIGARTVRVVNVERKETREQPPLLYDLTTLQKEANSRYGFSAEKTLDIAQSLYEKKFIT 313
Query: 133 YPRTESTAYPSSFDFRGTLSALANN----PVWGDYVERLLAEGYAKPRSGTDA-GDHPPI 187
YPRT S S D + AL N P + +Y R+ ++ + DH +
Sbjct: 314 YPRTGSRYI--SEDVAEEIPALIGNMTRYPRFAEYAGRMDTASLSRRSVDNEKIADHHAL 371
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P + + L D +Y V L T S C
Sbjct: 372 LPTENLPSE-LDADHRIVYEMVAGRMLETFSGAC 404
>gi|306815716|ref|ZP_07449865.1| DNA topoisomerase III [Escherichia coli NC101]
gi|305851378|gb|EFM51833.1| DNA topoisomerase III [Escherichia coli NC101]
Length = 669
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 13/224 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--------ERQK 60
+L G QTPTL V+R +I F P +W + L ++G + W E ++
Sbjct: 187 VLSVGRVQTPTLAMVVRRDQEIAGFVPRPWWQVFAGLEKDGIRFRAVWVAAEQYCDEEKR 246
Query: 61 LFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
+ A +L Q V +++ K+E P + L + S G G Q +
Sbjct: 247 CVNVQAARAVLQLCQQTPSAVVHEVTRKREKTPAPLCFSLGTLQEACSRKFGMGAQTVLN 306
Query: 121 LAERLY-TQGFISYPRTESTAYPSSF--DFRGTLSALA-NNPVWGDYVERLLAEGYAKPR 176
+A+ LY T +YPRT+ P S + R L+A+A ++P + +L ++
Sbjct: 307 IAQSLYETHKATTYPRTDCGYLPESMQQESREVLAAMARSDPALTPVLAQLDPGFVSRIW 366
Query: 177 SGTDAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
+ H I P R + +L +D ++Y + QH+L P
Sbjct: 367 NDKKITAHHAIIPTRQVFDIRVLSEDELKVYQLIRQHYLAQFLP 410
>gi|415907669|ref|ZP_11552881.1| DNA topoisomerase III [Herbaspirillum frisingense GSF30]
gi|407762912|gb|EKF71672.1| DNA topoisomerase III [Herbaspirillum frisingense GSF30]
Length = 892
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 20/230 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--ERQKLFDFDVATMF 70
G QTPTL V+R +I F P +W +H V K W + K + D
Sbjct: 194 GRVQTPTLSIVVEREEKIKKFVPRDYWEVHAEFVCAAGIYKGRWLDKGHKKDENDPEKRP 253
Query: 71 QKL---VMQDRILEVI-----DISE--KQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
++L D I+ +++E K +++ P + +L + A+S G+ + +
Sbjct: 254 ERLWSRAAADSIVAACRDKPGNVTEESKPTTQMSPGLFDLTSLQREANSRFGFSAKNTLG 313
Query: 121 LAERLYTQ-GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPR- 176
LA+ LY + ++YPRT+S P + + T+ ALA N + + +++L +G+ KP
Sbjct: 314 LAQALYEKHKVLTYPRTDSRHLPEDYINTVKDTMEALAENNNYHQFSKQILKQGWVKPNK 373
Query: 177 ---SGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
T DH I P ++ L + +LY V + F+ P ++
Sbjct: 374 RIFDNTKISDHFAIIPTTQVPKN-LSEPEQKLYDLVTRRFMAVFFPPAEF 422
>gi|401881458|gb|EJT45758.1| DNA topoisomerase 3-beta [Trichosporon asahii var. asahii CBS 2479]
Length = 1049
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNG-----YELKLEWERQKLFD 63
++ YGPCQ PTLGF V +Y ++ SF PE+FW + ++ ++++ +W R LFD
Sbjct: 395 LVSYGPCQFPTLGFVVDQYNRVQSFVPEQFWYISVTCERDSGDGETFKVEFKWRRNHLFD 454
Query: 64 FDVATMFQKLVMQDRILEVIDISEKQESK 92
DVA + + ++D V+ + EK +K
Sbjct: 455 LDVAVLLCERCIEDPTATVLKVEEKPTTK 483
>gi|261419915|ref|YP_003253597.1| DNA topoisomerase III [Geobacillus sp. Y412MC61]
gi|319766729|ref|YP_004132230.1| DNA topoisomerase III [Geobacillus sp. Y412MC52]
gi|261376372|gb|ACX79115.1| DNA topoisomerase III [Geobacillus sp. Y412MC61]
gi|317111595|gb|ADU94087.1| DNA topoisomerase III [Geobacillus sp. Y412MC52]
Length = 697
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWER---QKLFDFDV 66
L G QTPTL ++R +I SF P +WT+ + + WER +LFD D
Sbjct: 185 LSAGRVQTPTLAMIIEREREIQSFVPVPYWTIRAKI----GSITAVWERHGGHRLFDQDE 240
Query: 67 AT-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + +L Q V+ + K++S+ P + L + A+ G+ + + + +RL
Sbjct: 241 AKQLLARLDGQP--ARVVSVKRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRL 298
Query: 126 YTQ-GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR----SGTD 180
Y Q ++YPRT+S PS + T LA + D + LLA+G AK +
Sbjct: 299 YEQHKLVTYPRTDSRYLPSDMEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFNDDK 358
Query: 181 AGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
DH I P L D +LY + + FL P
Sbjct: 359 VTDHHAIVPTDERLNLSRLSTDERKLYDLIARRFLALFFP 398
>gi|329963598|ref|ZP_08301076.1| DNA topoisomerase [Bacteroides fluxus YIT 12057]
gi|328528503|gb|EGF55476.1| DNA topoisomerase [Bacteroides fluxus YIT 12057]
Length = 699
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL RYL+ +FKP ++ L + G E + +K + A +
Sbjct: 195 GRVQTPTLAIICSRYLENKAFKPATYFRLKLSTAKEGTEFTV-LSTEKFDGREKAEAARA 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V+ R + V+++ K+ + P + L K A+S G+ + + +A+ LY + FI+
Sbjct: 254 EVIGARTVRVVNVERKEAREQPPLLYDLTTLQKEANSRYGFSAEKTLDIAQSLYEKKFIT 313
Query: 133 YPRTESTAYPSSFDFRGTLSALANN----PVWGDYVERLLAEGYAKPRSGTDA-GDHPPI 187
YPRT S S D + AL N P + +Y R+ ++ + DH +
Sbjct: 314 YPRTGSRYI--SEDVAEEIPALIGNMTRYPRFAEYAGRMDTASLSRRSVDNEKIADHHAL 371
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P + + L D +Y V L T S C
Sbjct: 372 LPTENLPSE-LDADHRIVYEMVAGRMLETFSGAC 404
>gi|317477596|ref|ZP_07936816.1| DNA topoisomerase III [Bacteroides eggerthii 1_2_48FAA]
gi|316906244|gb|EFV27978.1| DNA topoisomerase III [Bacteroides eggerthii 1_2_48FAA]
Length = 699
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTPTL RYL+ +FKP ++ L + G E + +K + A +
Sbjct: 195 GRVQTPTLAIICSRYLENKAFKPAAYFRLKLSTAKEGTEFTV-LSTEKFDGREKAEAARA 253
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
V+ R + V+++ K+ + P + L K A+S G+ + + +A+ LY + FI+
Sbjct: 254 EVIGARTVRVVNVERKEAREQPPLLYDLTTLQKEANSRYGFSAEKTLDIAQSLYEKKFIT 313
Query: 133 YPRTESTAYPSSFDFRGTLSALANN----PVWGDYVERLLAEGYAKPRSGTDA-GDHPPI 187
YPRT S S D + AL N P + +Y R+ ++ + DH +
Sbjct: 314 YPRTGSRYI--SEDVAEEIPALIGNMTRYPRFAEYAGRMDTASLSRRSVDNEKIADHHAL 371
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P + + L D +Y V L T S C
Sbjct: 372 LPTENLPSE-LDADHRIVYEMVAGRMLETFSGAC 404
>gi|375008725|ref|YP_004982358.1| DNA topoisomerase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359287574|gb|AEV19258.1| DNA topoisomerase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 697
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWER---QKLFDFDV 66
L G QTPTL ++R +I SF P +WT+ + + WER +LFD D
Sbjct: 185 LSAGRVQTPTLAMIIEREREIQSFVPVPYWTIRAKI----GSITAVWERHGGHRLFDQDE 240
Query: 67 AT-MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A + +L Q V+ + K++S+ P + L + A+ G+ + + + +RL
Sbjct: 241 AKQLIARLDGQP--ARVVSVKRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRL 298
Query: 126 YTQ-GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR----SGTD 180
Y Q ++YPRT+S PS + T LA + D + LLA+G AK +
Sbjct: 299 YEQHKLVTYPRTDSRYLPSDMEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFNDDK 358
Query: 181 AGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSP 219
DH I P L D +LY + + FL P
Sbjct: 359 VTDHHAIVPTDERLNLSRLSTDERKLYDLIARRFLALFFP 398
>gi|421855090|ref|ZP_16287471.1| DNA topoisomerase I [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|403189408|dbj|GAB73672.1| DNA topoisomerase I [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 880
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 29/222 (13%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+ + V+R +I +F PE++W + + +++LE +Q +
Sbjct: 213 LSAGRVQSVAVKLVVEREREIRAFIPEEYWQVFADTLSKKDQIRLEAVKQAGKTLKLKNK 272
Query: 70 FQKLVMQDRILEVIDISE-------KQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQL 121
Q D +LEV+ SE + +KV P T L + AS+ LG+ + M L
Sbjct: 273 AQ----TDTLLEVLKKSEFTVAQREDKPTKVNPSAPYITSTLQQAASTRLGFSVKKTMML 328
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTD 180
A+RLY GFI+Y RT+ST + N + +Y ++ L AKP R G+
Sbjct: 329 AQRLYEGGFITYMRTDSTFLSDD------AIKMVRNHIESEYGDKYLP---AKPNRYGSK 379
Query: 181 AGDHPPITPMRSATEDMLG-------KDAWRLYSYVCQHFLG 215
AG +R ++ ++ G +DA RLY + + F+
Sbjct: 380 AGAQEAHEAIRPSSVELKGDQLAGVERDAQRLYDLIWRQFVA 421
>gi|424813642|ref|ZP_18238830.1| DNA topoisomerase I, archaeal [Candidatus Nanosalina sp. J07AB43]
gi|339758588|gb|EGQ43843.1| DNA topoisomerase I, archaeal [Candidatus Nanosalina sp. J07AB43]
Length = 684
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 11/214 (5%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKL-EWERQK---LFDFD 65
L G Q PTL + +I F+P+ +W + L +E K + E++K +++ D
Sbjct: 193 LSTGRVQGPTLKVLADKEKEIMEFEPDPYWEI--TLQHQEFEAKFKDNEKEKPARIWEED 250
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
A V + +V +I P N L K ASS P+ +A+ L
Sbjct: 251 KANQIFSTVKGESKAKVRNIKVNNYKHKPPIPFNLTGLQKEASSQFNLSPKKTQSIAQSL 310
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAK---PRSGTDAG 182
Y ISYPRTES P ++ L+ L + + D +++L + + R G
Sbjct: 311 YEDSLISYPRTESQKLPPKLGYKNLLNKLKSQEKYEDLAKKVLKKEQSDNLYTRQGKKED 370
Query: 183 D-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLG 215
D HP I P + L K ++Y + + F
Sbjct: 371 DAHPAIHPTGKHPSN-LSKMEKKVYDLIVKRFFA 403
>gi|339009221|ref|ZP_08641793.1| DNA topoisomerase 1 [Brevibacillus laterosporus LMG 15441]
gi|338773699|gb|EGP33230.1| DNA topoisomerase 1 [Brevibacillus laterosporus LMG 15441]
Length = 753
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 9/218 (4%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWER---QKLF 62
V+ + G QTPTL V+R +I +FK E FW + G + + W++ +LF
Sbjct: 191 VSDVFSAGRVQTPTLALVVKREKEIANFKSEPFWEVIASFTIEGKKYEGIWQKDGESRLF 250
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D +AT + + + V ++ ++++ + P N +L A+ + P+ + +A
Sbjct: 251 DEQMATRIAQFC-EKKPASVQEVKKERKEFLPPFLFNLSSLQATANKIFKFSPKKTLDVA 309
Query: 123 ERLYTQGFISYPRTESTAYP--SSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR--SG 178
++LY +GF+SYPR++S+ + F LS LA + + + R +
Sbjct: 310 QQLYLKGFLSYPRSDSSFVTPGEAKSFPEILSKLAKKKEFQSFFPTPIHSVANNKRYVNE 369
Query: 179 TDAGDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLG 215
DH I P D L D +Y V + +
Sbjct: 370 KKVTDHYAIIPTEQVPHLDKLSADERHIYDLVARRLIA 407
>gi|398962161|ref|ZP_10679148.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM30]
gi|398151440|gb|EJM39989.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM30]
Length = 876
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ E R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGSTVRFEVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + ++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSADAVAMARTYIEDEFGKKYLPETPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATEDM----LGKDAWRLYSYVCQHFLG 215
+A H I P + T + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTTPSKLAGMERDAERLYELIWRQFLA 407
>gi|117956843|gb|ABK58937.1| topoisomerase I [Photobacterium lipolyticum]
Length = 212
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDF---- 64
L G Q+ + V+R +I +F PE+FW +H + G + L+L +Q F
Sbjct: 50 LSAGRVQSVAVKLIVEREREIKAFTPEEFWDIHANTLTVGEDALRLMVAQQAGKAFRPVN 109
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ TM K V+ +V+D ++ S T L + AS+ LGYG + M LA+R
Sbjct: 110 EAQTMAAKSVLDSATYKVVDREDRPTSSKPSAPYITSTLQQAASTRLGYGVKRTMGLAQR 169
Query: 125 LYTQGFISYPRTEST 139
LY G+I+Y RT+ST
Sbjct: 170 LYEAGYITYMRTDST 184
>gi|255321201|ref|ZP_05362367.1| DNA topoisomerase I [Acinetobacter radioresistens SK82]
gi|262380113|ref|ZP_06073268.1| DNA topoisomerase I [Acinetobacter radioresistens SH164]
gi|255301755|gb|EET81006.1| DNA topoisomerase I [Acinetobacter radioresistens SK82]
gi|262298307|gb|EEY86221.1| DNA topoisomerase I [Acinetobacter radioresistens SH164]
Length = 880
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 29/222 (13%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+ + V+R +I +F PE++W + + +++LE +Q +
Sbjct: 213 LSAGRVQSVAVKLVVEREREIRAFIPEEYWQVFADTLSKKDQIRLEAVKQAGKTLKLKNK 272
Query: 70 FQKLVMQDRILEVIDISE-------KQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQL 121
Q D +LEV+ SE + +KV P T L + AS+ LG+ + M L
Sbjct: 273 AQ----TDTLLEVLKKSEFTVAQREDKPTKVNPSAPYITSTLQQAASTRLGFSVKKTMML 328
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTD 180
A+RLY GFI+Y RT+ST + N + +Y ++ L AKP R G+
Sbjct: 329 AQRLYEGGFITYMRTDSTFLSDD------AIKMVRNHIESEYGDKYLP---AKPNRYGSK 379
Query: 181 AGDHPPITPMRSATEDMLG-------KDAWRLYSYVCQHFLG 215
AG +R ++ ++ G +DA RLY + + F+
Sbjct: 380 AGAQEAHEAIRPSSVELKGDQLAGVERDAQRLYDLIWRQFVA 421
>gi|421464297|ref|ZP_15912987.1| DNA topoisomerase I [Acinetobacter radioresistens WC-A-157]
gi|400205050|gb|EJO36031.1| DNA topoisomerase I [Acinetobacter radioresistens WC-A-157]
Length = 855
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 29/222 (13%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G Q+ + V+R +I +F PE++W + + +++LE +Q +
Sbjct: 188 LSAGRVQSVAVKLVVEREREIRAFIPEEYWQVFADTLSKKDQIRLEAVKQAGKTLKLKNK 247
Query: 70 FQKLVMQDRILEVIDISE-------KQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQL 121
Q D +LEV+ SE + +KV P T L + AS+ LG+ + M L
Sbjct: 248 AQ----TDTLLEVLKKSEFTVAQREDKPTKVNPSAPYITSTLQQAASTRLGFSVKKTMML 303
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP-RSGTD 180
A+RLY GFI+Y RT+ST + N + +Y ++ L AKP R G+
Sbjct: 304 AQRLYEGGFITYMRTDSTFLSDD------AIKMVRNHIESEYGDKYLP---AKPNRYGSK 354
Query: 181 AGDHPPITPMRSATEDMLG-------KDAWRLYSYVCQHFLG 215
AG +R ++ ++ G +DA RLY + + F+
Sbjct: 355 AGAQEAHEAIRPSSVELKGDQLAGVERDAQRLYDLIWRQFVA 396
>gi|393775071|ref|ZP_10363385.1| DNA topoisomerase III [Ralstonia sp. PBA]
gi|392717648|gb|EIZ05208.1| DNA topoisomerase III [Ralstonia sp. PBA]
Length = 877
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 22/237 (9%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV--QNGYELKLEWERQKLFDFD 65
+ G QTPTL V+R +I F P +W + + GYE + + K +FD
Sbjct: 189 FLTTVGRVQTPTLSIVVEREEKIRRFVPRDYWEVRAEFIAAAGGYEGRWFDPKFKKNEFD 248
Query: 66 VATMFQKL-----------VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYG 114
+L +D+ V + S K +++ P + +L + A+S G+
Sbjct: 249 PEQRDSRLWSEAEAKSIVAACRDKPGTVTEES-KPSTQLSPLLFDLTSLQREANSRFGFS 307
Query: 115 PQMAMQLAERLYTQ-GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEG 171
+ + LA+ LY + ++YPRT++ A P + + TL L + + + +++L EG
Sbjct: 308 AKNTLGLAQALYEKHKVLTYPRTDARALPEDYLDTVKSTLEMLKESDNYLTHSKKILTEG 367
Query: 172 YAKPR----SGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
+ KP + DH I P A ++ L + +LY V + FL P +Y+
Sbjct: 368 WVKPNKRIFDNSKISDHFAIIPTLQAPKN-LSEPEQKLYDLVVRRFLSVFFPAAEYL 423
>gi|429214910|ref|ZP_19206072.1| DNA topoisomerase I [Pseudomonas sp. M1]
gi|428154137|gb|EKX00688.1| DNA topoisomerase I [Pseudomonas sp. M1]
Length = 869
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 28/231 (12%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVAT 68
L G Q+ + V+R +I +F PE++W +H L G + + E R+K F
Sbjct: 197 LSAGRVQSVAVKLVVEREREIRAFVPEEYWEIHADLNTPRGDKARFEVVREKGEAFKPLN 256
Query: 69 MFQKLVMQDRILEVIDISEKQESK---VRPCG-LNTVNLLKVASSALGYGPQMAMQLAER 124
Q + +++ K+E K RP T L + AS+ LG+G + M +A+R
Sbjct: 257 EAQAMAALEKLKASSYSVAKREDKPTSSRPSAPFITSTLQQAASNRLGFGVKKTMMMAQR 316
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGY--AKP-----RS 177
LY G+I+Y RT+ST LSA A + V G +++ + Y AKP +
Sbjct: 317 LYEAGYITYMRTDST----------NLSADAIDMVRG-FIDSEFGKKYLPAKPNFYSSKE 365
Query: 178 GTDAGDHPPITP----MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
G H I P +R + +DA RLY + + F+ P +Y+
Sbjct: 366 GAQEA-HEAIRPSDVNLRPTQLSGMERDAERLYDLIWRQFVACQMPPAEYL 415
>gi|229579098|ref|YP_002837496.1| DNA topoisomerase I [Sulfolobus islandicus Y.G.57.14]
gi|228009812|gb|ACP45574.1| DNA topoisomerase I [Sulfolobus islandicus Y.G.57.14]
Length = 677
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 9/219 (4%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYEL--KLEWERQKLFDFD 65
+IL G Q+PTL V ++ F P +T+ + Y L K+ E +KL + +
Sbjct: 195 VILSAGRVQSPTLVQVVNSEIERNLFIPLPKFTVSVIVKIKDYSLNIKINKEFEKLAEAN 254
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+L+ ++ ++V + K RP N +L A G P ++AE L
Sbjct: 255 --EFLNRLI--NKTVKVTQVENKIRILERPPPFNLTDLQVEAGRIYGISPYNVERIAEDL 310
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG--DYVERLLAEGYAKPRSGTDAGD 183
Y G ISYPRT S PS+ + + L N+ + V ++ Y + D
Sbjct: 311 YLDGLISYPRTNSQKIPSTINIYNIIKGLENSSYRKLVNLVRKITGGKYIVRQGVKDDPA 370
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HP I P + ++ L + +++Y + + FL +VS D K
Sbjct: 371 HPAIHPTGESPKN-LPNNKFKIYDLIARRFLASVSADAK 408
>gi|227830273|ref|YP_002832053.1| DNA topoisomerase I [Sulfolobus islandicus L.S.2.15]
gi|284997696|ref|YP_003419463.1| DNA topoisomerase I [Sulfolobus islandicus L.D.8.5]
gi|227456721|gb|ACP35408.1| DNA topoisomerase I [Sulfolobus islandicus L.S.2.15]
gi|284445591|gb|ADB87093.1| DNA topoisomerase I [Sulfolobus islandicus L.D.8.5]
Length = 677
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 9/219 (4%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYEL--KLEWERQKLFDFD 65
+IL G Q+PTL V ++ F P +T+ + Y L K+ E +KL + +
Sbjct: 195 VILSAGRVQSPTLVQVVNSEIERNLFIPLPKFTVSVIVKIKDYSLNIKINKEFEKLAEAN 254
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+L+ ++ ++V + K RP N +L A G P ++AE L
Sbjct: 255 --EFLNRLI--NKTVKVTQVENKIRILERPPPFNLTDLQVEAGRIYGISPYNVERIAEDL 310
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG--DYVERLLAEGYAKPRSGTDAGD 183
Y G ISYPRT S PS+ + + L N+ + V ++ Y + D
Sbjct: 311 YLDGLISYPRTNSQKIPSTINIYNIIKGLENSSYRKLVNLVRKITGGKYIVRQGVKDDPA 370
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HP I P + ++ L + +++Y + + FL +VS D K
Sbjct: 371 HPAIHPTGESPKN-LPNNKFKIYDLIARRFLASVSADAK 408
>gi|375013063|ref|YP_004990051.1| DNA topoisomerase III [Owenweeksia hongkongensis DSM 17368]
gi|359348987|gb|AEV33406.1| DNA topoisomerase III [Owenweeksia hongkongensis DSM 17368]
Length = 771
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 29/226 (12%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G QTPTL V R+ +I +FKP+ +W L R+ +F+
Sbjct: 186 VLSIGRVQTPTLAMLVNRHHEIENFKPQPYWELQTLY------------RETIFNNTEGK 233
Query: 69 MF-----QKLVMQ--DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
F +KL+ Q + LE+ DI K+ + P + +L ++ G ++
Sbjct: 234 FFTKEDGEKLLNQVSGKDLEITDIERKEGKEYAPKLFDLTSLQVYCNNKFGMSADATLKT 293
Query: 122 AERLYTQGFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPR--- 176
++LY ++YPR ++T P+ G L L N + + + LL + K
Sbjct: 294 VQKLYEMKVVTYPRVDTTFLPNDMYPKIPGILQGLTN---YSSFTQPLLGKKIPKSTKVF 350
Query: 177 SGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ DH I P + + L + +Y + + F+ PDCK
Sbjct: 351 NDKKVTDHHAIIP--TGEQKPLDGISQNVYDIIVRRFIAVFYPDCK 394
>gi|77460097|ref|YP_349604.1| DNA topoisomerase I [Pseudomonas fluorescens Pf0-1]
gi|398975659|ref|ZP_10685734.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM25]
gi|77384100|gb|ABA75613.1| DNA topoisomerase I [Pseudomonas fluorescens Pf0-1]
gi|398140104|gb|EJM29082.1| DNA topoisomerase I, bacterial [Pseudomonas sp. GM25]
Length = 876
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ E R+K
Sbjct: 192 AKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGSTVRFEVAREKGE 251
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q +++ ++ +K S T L + AS+ LG+G +
Sbjct: 252 AFKPLNEAQATAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 311
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST + A+A + + ++ ++ L E Y+
Sbjct: 312 MMMAQRLYEAGYITYMRTDST------NLSADAVAMARDYIETEFGKKYLPESPNVYSSK 365
Query: 176 RSGTDAGDHPPITPMRSATEDM----LGKDAWRLYSYVCQHFLG 215
+A H I P + T + +DA RLY + + FL
Sbjct: 366 EGAQEA--HEAIRPSDANTTPAKLAGMERDAERLYELIWRQFLA 407
>gi|229582161|ref|YP_002840560.1| DNA topoisomerase I [Sulfolobus islandicus Y.N.15.51]
gi|228012877|gb|ACP48638.1| DNA topoisomerase I [Sulfolobus islandicus Y.N.15.51]
Length = 677
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 9/219 (4%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYEL--KLEWERQKLFDFD 65
+IL G Q+PTL V ++ F P +T+ + Y L K+ E +KL + +
Sbjct: 195 VILSAGRVQSPTLVQVVSSEIERNLFIPLPKFTVSVIVKIKDYSLNIKINKEFEKLAEAN 254
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+L+ ++ ++V + K RP N +L A G P ++AE L
Sbjct: 255 --EFLNRLI--NKTVKVTQVENKIRILERPPPFNLTDLQVEAGRIYGISPYNVERIAEDL 310
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG--DYVERLLAEGYAKPRSGTDAGD 183
Y G ISYPRT S PS+ + + L N+ + V ++ Y + D
Sbjct: 311 YLDGLISYPRTNSQKIPSTINIYNIIKGLENSSYRKLVNLVRKITGGKYIVRQGVKDDPA 370
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
HP I P + ++ L + +++Y + + FL +VS D K
Sbjct: 371 HPAIHPTGESPKN-LPNNKFKIYDLIARRFLASVSADAK 408
>gi|312959629|ref|ZP_07774146.1| DNA topoisomerase I [Pseudomonas fluorescens WH6]
gi|311286346|gb|EFQ64910.1| DNA topoisomerase I [Pseudomonas fluorescens WH6]
Length = 765
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLF 62
A + L G Q+ + V+R +I +F PE++W +H L G ++ E R+K
Sbjct: 84 AKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGANVRFEVAREKGE 143
Query: 63 DFDVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA 118
F Q + +++ ++ +K S T L + AS+ LG+G +
Sbjct: 144 AFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKT 203
Query: 119 MQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKP 175
M +A+RLY G+I+Y RT+ST S D A+A + ++ ++ L E Y+
Sbjct: 204 MMMAQRLYEAGYITYMRTDSTNL--SLD----AVAMARTYIESEFGKKYLPEKPNVYSSK 257
Query: 176 RSGTDAGDHPPITPMRSATE----DMLGKDAWRLYSYVCQHFLG 215
+A H I P + T + +DA RLY + + FL
Sbjct: 258 EGAQEA--HEAIRPSDANTTPAKLSGMERDAERLYELIWRQFLA 299
>gi|219687817|dbj|BAH09415.1| topoisomerase I [Photobacterium aquimaris]
gi|219687819|dbj|BAH09416.1| topoisomerase I [Photobacterium aquimaris]
Length = 201
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV---QNGYELKLEWERQKLF--DF 64
L G Q+ + V+R +I +F PE+FW +H + +N L + + K F +
Sbjct: 45 LSAGRVQSVAVKLIVEREHEINAFDPEEFWDIHADTLTVGKNALRLMVAQQAGKSFRPEN 104
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V TM +++ EVI+ ++ S T L + AS+ LGYG + M LA+R
Sbjct: 105 KVDTMAAHALLEKAAYEVIEREDRPTSSKPSAPYITSTLQQAASTRLGYGVKRTMGLAQR 164
Query: 125 LYTQGFISYPRTEST 139
LY G+I+Y RT+ST
Sbjct: 165 LYEAGYITYMRTDST 179
>gi|325285855|ref|YP_004261645.1| DNA topoisomerase III [Cellulophaga lytica DSM 7489]
gi|324321309|gb|ADY28774.1| DNA topoisomerase III [Cellulophaga lytica DSM 7489]
Length = 766
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 15/219 (6%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
+L G QTPTL V RY +I +FKP+ +W L + E+ + +
Sbjct: 186 MLSVGRVQTPTLAMIVNRYHEIENFKPQPYWELQTLYRDTLFNC----EKGRFLKKEEGE 241
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
F V ++ E++ ++K+ + P + L ++ G+ +++ ++LY Q
Sbjct: 242 AFAAKVKEND-FEIVSTTKKKGKEYAPKLFDLTGLQVYCNTKFGFSADETLKIVQKLYEQ 300
Query: 129 GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLA---EGYAKPRSGTDAGD 183
++YPR ++T P+ G L L N + + + +LA AK + D
Sbjct: 301 KVVTYPRVDTTFLPNDIYPKVAGILQKLTN---YQNLTQVVLAGKIRKSAKVFNDKKVTD 357
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
H I P + + L + +Y + + F+ PDC+
Sbjct: 358 HHAIIP--TGVQINLQHNQQLVYDIITKRFIAVFYPDCE 394
>gi|388892201|gb|AFK80985.1| topoisomerase I, partial [Photobacterium aquimaris]
Length = 223
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV---QNGYELKLEWERQKLF--DF 64
L G Q+ + V+R +I +F PE+FW +H + +N L + + K F +
Sbjct: 60 LSAGRVQSVAVKLIVEREHEINAFDPEEFWDIHADTLTVGKNALRLMVAQQAGKSFRPEN 119
Query: 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V TM +++ EVI+ ++ S T L + AS+ LGYG + M LA+R
Sbjct: 120 KVDTMAAHALLEKAAYEVIEREDRPTSSKPSAPYITSTLQQAASTRLGYGVKRTMGLAQR 179
Query: 125 LYTQGFISYPRTEST 139
LY G+I+Y RT+ST
Sbjct: 180 LYEAGYITYMRTDST 194
>gi|119774459|ref|YP_927199.1| DNA topoisomerase I [Shewanella amazonensis SB2B]
gi|119766959|gb|ABL99529.1| DNA topoisomerase [Shewanella amazonensis SB2B]
Length = 872
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVAT 68
L G Q+ + V+R +I +F PE+FW +H L EL +E R + F+ T
Sbjct: 199 LSAGRVQSVAVRLVVEREAEIKAFVPEEFWDVHATLSTPAAAELVMEVSRYRNEAFEPVT 258
Query: 69 MFQKLV----MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ + ++ V D +K S T L + AS+ LG+G + M LA+R
Sbjct: 259 QSEAMAAVNALEKAAFTVTDREDKATSSKPSAPFITSTLQQAASTRLGFGVKKTMMLAQR 318
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGY---AKPRSGTDA 181
LY G I+Y RT+ST LS A V ++E+ Y + R G+
Sbjct: 319 LYEAGHITYMRTDST----------NLSQEALENVRA-HIEKEFGSKYLPESPIRYGSKE 367
Query: 182 G---DHPPITP----MRSATEDMLGKDAWRLYSYVCQHFLG 215
G H I P + SAT + +DA RLY + + F+
Sbjct: 368 GAQEAHEAIRPSNVKVESATLIDMERDAQRLYELIWRQFVA 408
>gi|224372175|ref|YP_002606547.1| DNA topoisomerase I [Nautilia profundicola AmH]
gi|223589287|gb|ACM93023.1| DNA topoisomerase I [Nautilia profundicola AmH]
Length = 728
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 32/232 (13%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVATMFQ 71
G Q+ L V R +I +FKP+++W++ + G +K ++ FD Q
Sbjct: 166 GRVQSAALKLVVDREREIKAFKPQEYWSIEGIFKKIEGSLIKYNGKKLDKFDIKSKDEAQ 225
Query: 72 KLVMQDRILE--VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLY--- 126
K+V + + LE V +I K + P T L +VASS LG+ P+ MQ+A++LY
Sbjct: 226 KIVEELKPLEYTVREIETKTTTVKSPAPFMTSTLQQVASSELGFSPRKTMQIAQKLYEGV 285
Query: 127 -----TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
G I+Y RT+S +AL +++++ + E YA+ ++
Sbjct: 286 KTPVGETGIITYMRTDSLNIAK----EAQQAAL-------EFIKQNIGEEYAQAKTYATK 334
Query: 182 GD-----HPPITP--MRSATEDM---LGKDAWRLYSYVCQHFLGTVSPDCKY 223
H I P +R +D+ L D +LY+ + FL + D K+
Sbjct: 335 NQNAQEAHEAIRPVDVRLTPDDLKNYLKPDELKLYALIFNRFLASQMKDAKF 386
>gi|422646821|ref|ZP_16709953.1| DNA topoisomerase I subunit omega [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330960367|gb|EGH60627.1| DNA topoisomerase I subunit omega [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 870
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 20/222 (9%)
Query: 6 VTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDF 64
V L G Q+ + V+R +I +F PE++W +H L G ++ E R+K F
Sbjct: 194 VARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGANVRFEVAREKGEAF 253
Query: 65 DVATMFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQ 120
Q + +++ ++ +K S T L + AS+ LG+G + M
Sbjct: 254 KPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMM 313
Query: 121 LAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG---YAKPRS 177
+A+RLY G+I+Y RT+ST + +++A + + ++ ++ L E Y+
Sbjct: 314 MAQRLYEAGYITYMRTDST------NLSADAASMARDYIETEFGKKYLPEAANVYSSKEG 367
Query: 178 GTDAGDHPPITPMRSATEDM----LGKDAWRLYSYVCQHFLG 215
+A H I P T + +DA RLY + + F+
Sbjct: 368 AQEA--HEAIRPSDVNTHPSKLTGMERDAERLYELIWRQFVA 407
>gi|228990943|ref|ZP_04150906.1| DNA topoisomerase III [Bacillus pseudomycoides DSM 12442]
gi|228768723|gb|EEM17323.1| DNA topoisomerase III [Bacillus pseudomycoides DSM 12442]
Length = 714
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 15/214 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ---KLFDFDVATM 69
G QTPTL V+R +I +FK E FW + G + + +WE+ +L D D+A
Sbjct: 198 GRVQTPTLALIVKREKEIENFKSEPFWEVFATFNIEGKKYEGKWEKDNESRLKDPDMANK 257
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
Q++ EV ++ +++ P N +L A+ A + P+ + + + LY +G
Sbjct: 258 IAAFC-QNKPAEVKEMKTERKEFQPPFLFNLSSLQATANKAFKFSPKKTLDITQALYQKG 316
Query: 130 FISYPRTEST--AYPSSFDFRGTLSALANNPVWGDY----VERLLAEG-YAKPRSGTDAG 182
+SYPR++S + F L L+ + D +E ++ Y + T
Sbjct: 317 IVSYPRSDSNYVTQGEAATFPDILQKLSQFEEYKDLLPAPIESIMNNKRYVNEKKVT--- 373
Query: 183 DHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLG 215
DH I P AT + L D ++Y + + +
Sbjct: 374 DHYAIIPTEQATNPNKLSGDEKKIYDMIVRRLIA 407
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,580,999,504
Number of Sequences: 23463169
Number of extensions: 142741986
Number of successful extensions: 302969
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2882
Number of HSP's successfully gapped in prelim test: 4941
Number of HSP's that attempted gapping in prelim test: 294352
Number of HSP's gapped (non-prelim): 8144
length of query: 224
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 87
effective length of database: 9,144,741,214
effective search space: 795592485618
effective search space used: 795592485618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)