BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045217
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z321|TOP3B_MOUSE DNA topoisomerase 3-beta-1 OS=Mus musculus GN=Top3b PE=2 SV=1
Length = 862
Score = 269 bits (688), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + + E L L+W+R ++FD+++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ V S K+++K RP LNTV +L+VASSALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V++LLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>sp|O95985|TOP3B_HUMAN DNA topoisomerase 3-beta-1 OS=Homo sapiens GN=TOP3B PE=1 SV=1
Length = 862
Score = 268 bits (686), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVA 67
++ +GPCQTPTLGFCV+R+ +I SFKPE +W L + L L+W+R ++FD ++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIA 270
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
MF + ++ +V S K+++K RP LNTV +L+VASS+LG GPQ AMQ AERLYT
Sbjct: 271 QMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYT 330
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
QG+ISYPRTE+T YP +FD +G+L AN+P W D V+RLLAEG +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAEGINRPRKGHDAGDHPPI 390
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
TPM+SATE LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
>sp|O96651|TOP3B_DROME DNA topoisomerase 3-beta OS=Drosophila melanogaster GN=Top3beta
PE=2 SV=2
Length = 875
Score = 218 bits (554), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 138/215 (64%), Gaps = 3/215 (1%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YGPCQTPTLGFCV+R+ I +FKPE FW H L+ E+ LEW R ++F D+A
Sbjct: 210 LISYGPCQTPTLGFCVKRHDDIQTFKPESFW--HLQLLAGQPEVTLEWARGRVFKKDIAI 267
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
M V + + V ++ K+ K +P LNTV L+++ SS LG GP AMQ+AERLYTQ
Sbjct: 268 MLLNRVKEHKKATVESVASKEAYKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQ 327
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
G+ISYPRTE+ YP++FD L L + +G+ +L + PR G DAGDHPPIT
Sbjct: 328 GYISYPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHPPIT 386
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
PM+ +D WR+Y ++C+HF+GTVS D KY
Sbjct: 387 PMKLGNRSDFDRDTWRVYEFICRHFMGTVSRDLKY 421
>sp|O61660|TOP3_CAEEL DNA topoisomerase 3 OS=Caenorhabditis elegans GN=top-3 PE=2 SV=1
Length = 759
Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 119/215 (55%), Gaps = 2/215 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
++ YG CQ PTLGF RY I +F E FW L + ++++ W+R +LFD D
Sbjct: 210 VISYGSCQFPTLGFVTDRYKMIENFVSEPFWKLIVEHTRESHKVEFLWDRNRLFDRDTVD 269
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + + V +++K +SK RP L+TV L K+ S L + MQ+AE+LY++
Sbjct: 270 ILHDECKETKEAHVEKVAKKPKSKWRPQALDTVELEKLGISKLRMSAKQTMQVAEKLYSK 329
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPI 187
GFISYPRTE+ +P+ + + + +WGD+ +L G PR+G + + HPPI
Sbjct: 330 GFISYPRTETNKFPAGLNLTPLVQQQTQSNIWGDFANEVLQNG-VNPRNGRKSDEAHPPI 388
Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P++ + L D W++Y V +HFL VS D +
Sbjct: 389 HPLKFTEKHQLQGDDWKVYELVVRHFLACVSQDAQ 423
>sp|Q8T2T7|TOP3_DICDI DNA topoisomerase 3 OS=Dictyostelium discoideum GN=top3 PE=3 SV=1
Length = 828
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 123/220 (55%), Gaps = 11/220 (5%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL---HPYLVQNGYEL---KLEWERQKLF 62
I+ YGPCQ PTLGF V+RY +I +FKPE FW L H + + ++ W R +LF
Sbjct: 232 IISYGPCQFPTLGFVVERYFRIVNFKPEDFWHLSVVHEKMDTSSGKMIPVTFSWCRNRLF 291
Query: 63 DFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
D+ A + + + + V+D++ K ES+ RP L T+ L K AS L MQ A
Sbjct: 292 DYTAAFILYEKCLDNTEATVVDVTSK-ESRYRPVPLTTIELQKAASKKLRISSVQTMQYA 350
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEG-YAKPRSGTDA 181
E LYT+G ISYPRTE+ ++ + D +G + A+NP WG Y RL+ + P+SG +
Sbjct: 351 EELYTKGLISYPRTETDSFQAGTDLKGLIGNQASNPEWGAYASRLINNNQFVYPKSGKNN 410
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ HPPI P SAT L + ++Y ++ + FL S +
Sbjct: 411 DNSHPPIHPTSSAT--GLSGNLKKIYDFITRRFLACCSEE 448
>sp|O60126|TOP3_SCHPO DNA topoisomerase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=top3 PE=1 SV=2
Length = 622
Score = 150 bits (379), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 2/216 (0%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
I+ YGPCQ PTLGF V R+ ++ F PE +W L + G ++ WER K+FD
Sbjct: 206 IISYGPCQFPTLGFVVDRWQRVEDFVPETYWHLRFVDKRQGKTIQFNWERAKVFDRLTTM 265
Query: 69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
+ + ++ + +V++I++K ++K +P L+TV L K+ L + ++LAE LYT
Sbjct: 266 IILENCLECKTAKVVNITQKPKTKYKPLPLSTVELTKLGPKHLRISAKKTLELAENLYTN 325
Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT-DAGDHPPI 187
GF+SYPRTE+ + SS + + L W Y E LLA Y PR G + HPPI
Sbjct: 326 GFVSYPRTETDQFDSSMNLHAIIQKLTGAQEWDSYAEGLLAGDYRPPRKGKHNDRAHPPI 385
Query: 188 TPMRSATEDML-GKDAWRLYSYVCQHFLGTVSPDCK 222
P++ L +D W++Y + + FL S + K
Sbjct: 386 HPVQMVHRSALPSQDHWKVYELITRRFLACCSDNAK 421
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1
Length = 1003
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHKDGTVEFNWKRY 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L M+D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G+
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRNGS 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + T + G D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTK-YTSGLQGDDR-RLYEFIVRHFLACCSQDAQ 450
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1
Length = 1001
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 124/224 (55%), Gaps = 4/224 (1%)
Query: 1 MFVAVVTLILI-YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQ 59
+F V+ LI YG CQ PTLGF V+R+ I +F PE F + ++ W+R
Sbjct: 229 IFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRH 288
Query: 60 KLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAM 119
+LF+ + +L ++D + V+++ K +SK RP L+TV L K+AS L + M
Sbjct: 289 RLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETM 348
Query: 120 QLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGT 179
++AE+LYTQG+ISYPRTE+ +P + + +P WG + + +L G PR+G
Sbjct: 349 RIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGN 408
Query: 180 DAGD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ HPPI P + T ++ G D RLY ++ +HFL S D +
Sbjct: 409 KSDQAHPPIHPTKY-TNNLQG-DEQRLYEFIVRHFLACCSQDAQ 450
>sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha
PE=2 SV=2
Length = 1250
Score = 130 bits (327), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 8/220 (3%)
Query: 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDF 64
+ ++ YG CQ PTLGF +RY +I +F E FW + + ++ W R +LFD
Sbjct: 226 IADKLISYGSCQIPTLGFVAERYKEIEAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDK 285
Query: 65 DVATMFQKLVMQD---RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQL 121
+ + L + + R L V ++ K + K RP L+TV + K+ S L + M +
Sbjct: 286 EACENYLLLCLAEPDPRAL-VESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTI 344
Query: 122 AERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA 181
AE+LYT+GFISYPRTE+ + F + + WG + +R++ G PR+G +
Sbjct: 345 AEKLYTKGFISYPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWG-PNPRNGNKS 403
Query: 182 GD-HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
HPPI P + A E++ G +A R+Y V +HFL VS D
Sbjct: 404 DQAHPPIHPTKLA-ENLQGNEA-RVYELVVRHFLACVSKD 441
>sp|P13099|TOP3_YEAST DNA topoisomerase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP3 PE=1 SV=1
Length = 656
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 115/235 (48%), Gaps = 21/235 (8%)
Query: 9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELKLEWERQKLFD-FD 65
++ YG CQ PTLGF V R+ +I +F PE+FW + + NG +W+R LFD
Sbjct: 228 VVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLS 287
Query: 66 VATMFQKLV-MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
V T ++ + + +V+D+ K +K RP L TV L K + L + ++ AE+
Sbjct: 288 VLTFYETCIETAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEK 347
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLS--------ALANNPVWGDYVERLLA------- 169
LY +GFISYPRTE+ +P + D + + A W Y LL
Sbjct: 348 LYQKGFISYPRTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNN 407
Query: 170 EGYAKPRSGT-DAGDHPPITPMRS-ATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
+ PRSG+ D HPPI P+ S E + R+Y YV +HFL S D K
Sbjct: 408 NKFKFPRSGSHDDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAK 462
>sp|Q9HM08|TOP1_THEAC DNA topoisomerase 1 OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=topA
PE=3 SV=1
Length = 770
Score = 113 bits (283), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 7/214 (3%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G QTPTL V R +I SF+PE++WT+ ++G + K + + + D D A
Sbjct: 193 LSAGRVQTPTLAIVVDREREIQSFRPERYWTISITFDKDG-QFKARYP-ENIKDQDTAEK 250
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+ + + + V + K++ RP +T L+ AS +G P AM +AE LY +G
Sbjct: 251 IYEAI-KGKNGRVSSYTSKEDHIRRPAPFSTTEFLREASR-IGIMPTKAMSIAENLYMRG 308
Query: 130 FISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPPIT 188
ISYPRT++T YP S + + L L N + YV+ + P G + DHPPI
Sbjct: 309 LISYPRTDNTVYPRSINLKSVLKKLENT-AYSKYVKEIETFDRILPSRGRIETTDHPPIY 367
Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCK 222
P+ S E + G D R+Y + +HFL T+ D K
Sbjct: 368 PVDSPKEQLKG-DYGRVYDLILRHFLSTLYRDGK 400
>sp|O28469|TOP1_ARCFU DNA topoisomerase 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=topA PE=3
SV=1
Length = 663
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 20/217 (9%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTL----HPYLVQNGYELKLEWERQKLFDFD 65
L G QTPTL V R L+I +FKPEK++ + ++ ++ + E +KLF
Sbjct: 192 LSVGRVQTPTLRLIVDRELEIQNFKPEKYYEIFAEFEGFIAKHPKRYGSKEEAEKLFAKI 251
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
T +V + + ++ + RP NT L+ AS + P AM +AE L
Sbjct: 252 GETA-----------KVEEFTRRRMEENRPTPFNTTEFLREASKFMS--PHKAMNIAETL 298
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDH 184
Y G+ISYPRT++T YP + + +SAL++ V+ + +L++ P G + DH
Sbjct: 299 YMNGYISYPRTDNTVYPPTINLIEIVSALSS--VFPREAQIVLSQDKITPSRGRRETKDH 356
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
PPI P A L KD W +Y V + FL T++P
Sbjct: 357 PPIYPTGVAKRGELSKDEWTIYELVVRRFLATLAPKA 393
>sp|Q9UYS8|TOP1_PYRAB DNA topoisomerase 1 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=topA PE=3 SV=1
Length = 685
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 3/210 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
++L G Q PTL F V+R +I SF P+ +W + + +NG +L +E+ K++ + A
Sbjct: 193 VVLSTGRVQGPTLKFLVEREREIQSFVPKPYWVIKLVIEKNGQKLVANYEKDKIWSEEEA 252
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
V + + V +I K++ + P + L + A SA G+ P+ + +A+ LY
Sbjct: 253 KKIVTEVKKSK-ARVSNIEVKRQKRNPPVPFDLGTLQREAYSAFGFSPKKTLDIAQSLYE 311
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPP 186
+GF SYPRTES P + +FR + ++ P + Y LL KP G HP
Sbjct: 312 KGFTSYPRTESQKLPKNLNFRLIIQNISRMPQYRPYAHLLLGMPELKPVEGKKEDPAHPA 371
Query: 187 ITPMRSA-TEDMLGKDAWRLYSYVCQHFLG 215
I P L KD +LY + + FL
Sbjct: 372 IYPTGEIPGPGDLSKDEEKLYDMIVRRFLA 401
>sp|O58356|TOP1_PYRHO DNA topoisomerase 1 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=topA PE=3
SV=1
Length = 686
Score = 100 bits (250), Expect = 6e-21, Method: Composition-based stats.
Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 3/210 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
++L G Q PTL F V+R +I SF P +W + +NG + +E+ K+++ +
Sbjct: 193 VVLSTGRVQGPTLKFLVEREREIQSFVPRPYWVIKLIFEKNGQKFTANYEKDKIWEEEEG 252
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
L ++ I V ++ K++ + P + L + A SA G+ P+ + +A+ LY
Sbjct: 253 KRIV-LEVKKSIPRVSNVEIKRQKRTPPHPFDLGTLQREAYSAFGFSPKKTLDIAQSLYE 311
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPP 186
+GF SYPRTES P + +FR + LA P + Y LL KP G + HP
Sbjct: 312 KGFSSYPRTESQKLPRNINFRMIIQNLAKMPQYRPYAHILLGLPELKPVEGKKEDPAHPA 371
Query: 187 ITPMRSATEDM-LGKDAWRLYSYVCQHFLG 215
I P L KD +LY + + FL
Sbjct: 372 IYPTGEIPRPGDLTKDEEKLYDMIVRRFLA 401
>sp|O27661|TOP1_METTH DNA topoisomerase 1 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=topA PE=3 SV=1
Length = 718
Score = 99.4 bits (246), Expect = 2e-20, Method: Composition-based stats.
Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 10/210 (4%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD-VATMFQ 71
G QTPTL V+R +I FKP +W + L G + E +R K+F + V ++ +
Sbjct: 204 GRVQTPTLAILVEREKEIRDFKPVPYWIIRAEL---GEGIIAESKRGKIFKRELVDSILE 260
Query: 72 KLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
K D EV D+ + + P + L A G+ P+ +A+ LYT+G+
Sbjct: 261 KCQGSDA--EVKDVRVRDTIRKPPVPFDLGTLQSEAYRVFGFSPKKTQTIAQNLYTEGYT 318
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD-HPPITPM 190
SYPRT S P S + L LA NP +G ++ERL G KP G D HP I P
Sbjct: 319 SYPRTSSQKLPESIGYEKILKNLAKNPRFGVHIERL--RGPLKPHEGKKEDDAHPAIHPT 376
Query: 191 RSATEDMLGKDAWRLYSYVCQHFLGTVSPD 220
+ L KD ++Y + F+ D
Sbjct: 377 GLLPSE-LSKDEKKVYDLIVHRFISVFGED 405
>sp|Q59046|TOP1_METJA DNA topoisomerase 1 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=topA PE=3 SV=1
Length = 761
Score = 79.7 bits (195), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 6/177 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q P L F +R L+I F P+ +W + L N LK E++K ++ A +
Sbjct: 198 GRVQGPALAFLTERELEIKKFIPKPYWVIEALLKDN---LKAIHEKEKFWNEKEAKNVYE 254
Query: 73 LVMQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ ++ +V++I +K + K++P + L + A S P+ ++A++LY I
Sbjct: 255 KIKDEKSAKVVEI-KKTKRKLKPLPPFDLGTLQREAYSYFKISPKETQEIAQKLYENALI 313
Query: 132 SYPRTESTAYPSSFDF-RGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
SYPRT S P + L+ + N+PV+G + ER+L E + HP I
Sbjct: 314 SYPRTSSQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGKKEDPAHPAI 370
>sp|Q9YB01|TOP1_AERPE DNA topoisomerase 1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=topA PE=3 SV=1
Length = 673
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 4/217 (1%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
+IL G Q+PTL +R+ +I P+ + + G K + A
Sbjct: 186 VILSAGRVQSPTLVEAYRRWREINLHVPKASVAVKITAEKGGGVFDARPHGWKPQSLETA 245
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ + ++ L V ++ ++ P N +L K A+ LG P +AE LY
Sbjct: 246 RSIKSELRKNPWLAVEEVRSERSILRPPPAFNLGDLQKEANRILGLPPLRTQSIAEELYL 305
Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE--GYAKPRSGT-DAGDH 184
+ ISYPRT S P S ++R L LA+ P+ G LL E G +P G+ D H
Sbjct: 306 EALISYPRTNSQKLPPSINYRAILDKLAHGPL-GREARELLKETGGVLRPVQGSKDDPAH 364
Query: 185 PPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDC 221
P I P L K+ +Y + + FL S +
Sbjct: 365 PAIHPTGEKPSQRLSKEHMAVYELIVRRFLAAFSREA 401
>sp|O73954|TOP1_PYRFU DNA topoisomerase 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=topA PE=3 SV=2
Length = 1060
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVA 67
++L G Q PTL F V R +I SF P+ +W + +NG + +E+ K++D + A
Sbjct: 193 VVLSTGRVQGPTLKFLVDREREIQSFVPQPYWVIKLIFEKNGKKYTANYEKDKIWDENEA 252
Query: 68 TMFQKLVMQDRI--LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+++V++ + V +I KQ+++ P + L + A SA G+ P+ + +A+ L
Sbjct: 253 ---KRIVLEVKKAPARVTNIEVKQQNRNPPVPFDLGTLQREAYSAFGFSPKKTLDIAQSL 309
Query: 126 YTQGFISYPRT 136
Y +GF +P T
Sbjct: 310 YEKGFCLHPDT 320
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG-DHPPITPM 190
SYPRTES P + +++ + LA P + Y LL KP G HP I P
Sbjct: 689 SYPRTESQKLPKNLNYKFIIQNLARIPEYRPYAHLLLGMPELKPVEGKKEDPAHPAIYPT 748
Query: 191 RSATE-DMLGKDAWRLYSYVCQHFLGT 216
L KD LY + + FL
Sbjct: 749 GEIPRPGDLTKDEALLYDMIVRRFLAV 775
>sp|Q9CN30|TOP1_PASMU DNA topoisomerase 1 OS=Pasteurella multocida (strain Pm70) GN=topA
PE=3 SV=1
Length = 868
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 102/229 (44%), Gaps = 26/229 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFW---TLHPYLVQNGYELKLEWERQKLFDFDV 66
L G Q+ + V+R +I +F+PE++W L + L + + K F+
Sbjct: 197 LSAGRVQSVAVKLVVEREREIKAFQPEEYWEIDVLTQTQAKQALRLAVTQFKGKKFEPKN 256
Query: 67 ATMFQKLV--MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
AT Q V +Q V D+ K T L + AS+ LG+G + M LA+R
Sbjct: 257 ATQAQSAVDFLQHADYVVSDLETKPTHSRAKAPFITSTLQQTASTRLGFGVKKTMMLAQR 316
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGY--AKP---RSGT 179
LY G+I+Y RT+ST LS A V G Y++ E Y +KP S
Sbjct: 317 LYEAGYITYMRTDST----------NLSQDALKMVRG-YIQSHYGESYLPSKPVFYSSKE 365
Query: 180 DAGD-HPPITP--MRSATEDMLG--KDAWRLYSYVCQHFLGTVSPDCKY 223
+A + H I P + + E + G KDA RLY + + F+ P +Y
Sbjct: 366 NAQEAHEAIRPSDVNTLAEQLTGMDKDAVRLYDLIWRQFVACQMPAAQY 414
>sp|O67226|RGYR2_AQUAE Reverse gyrase 2 OS=Aquifex aeolicus (strain VF5) GN=rgy2 PE=3 SV=2
Length = 1159
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 26/180 (14%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTP LG+ ++RY + K E LH N + LK+E E MF K
Sbjct: 796 GRVQTPVLGWVIKRYEESKEKKGE--ILLHV----NDFPLKIEIE---------DLMFAK 840
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVN-LLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ +D L I +S QE + RP T + +L+ A+ L M++ + L+ G+I
Sbjct: 841 EIFKDLELADISLSNPQEEEKRPLPPYTTDTVLEDANEKLHLSAHKTMKILQELFEAGYI 900
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMR 191
+Y RT+ST + + L P Y+ ++ E Y PRS + G H I P R
Sbjct: 901 TYHRTDSTRVSDAGKY------LVAKP----YITKMFGEEYFYPRSWGEGGAHECIRPTR 950
>sp|Q9HZJ5|TOP1_PSEAE DNA topoisomerase 1 OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=topA PE=3 SV=1
Length = 868
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 14/214 (6%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWERQKLFDFDVAT 68
L G Q+ + V+R +I +F PE++W +H L G ++ E R+K F
Sbjct: 196 LSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLGTAKGANVRFEVTREKGEAFKPLN 255
Query: 69 MFQKLVMQDRILEVIDISEKQESK---VRPCG-LNTVNLLKVASSALGYGPQMAMQLAER 124
Q + +++ K+E + RP T L + AS+ LG+G + M +A+R
Sbjct: 256 EAQAMAALEKLKASAYSVAKREDRPTSSRPSAPFITSTLQQAASNRLGFGVKKTMMMAQR 315
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDH 184
LY G+I+Y RT+ST S D G + + Y+ A Y+ +A H
Sbjct: 316 LYEAGYITYMRTDSTNL--SADAIGMVRGFIEDEFGQKYLPG-KANVYSSKEGAQEA--H 370
Query: 185 PPITP----MRSATEDMLGKDAWRLYSYVCQHFL 214
I P ++ + +DA RLY + + F+
Sbjct: 371 EAIRPSDVNLKPTQLSGMERDAERLYDLIWRQFV 404
>sp|P43012|TOP1_HAEIN DNA topoisomerase 1 OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=topA PE=3 SV=1
Length = 868
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 102/231 (44%), Gaps = 30/231 (12%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLV-QNGYELKLEWERQKLFDFDVAT 68
L G Q+ + V+R +I +F+PE++W + QN ++L+ K FD
Sbjct: 197 LSAGRVQSVAVKLLVEREREIKAFQPEEYWEVAVLTNNQNKQAIRLDVTDYKGKKFDPKN 256
Query: 69 MFQK------LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLA 122
+ L + D + V D+ K S T L + AS+ LG+G + M LA
Sbjct: 257 QKEAQSAVDFLNVSDYV--VTDLETKPTSSRPRAPFITSTLQQTASTRLGFGVKKTMMLA 314
Query: 123 ERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGY--AKPR---S 177
+RLY G+I+Y RT+ST LS A N + Y+E Y KP S
Sbjct: 315 QRLYEAGYITYMRTDST----------NLSQDALN-MARTYIENHFGAQYLPEKPNFYSS 363
Query: 178 GTDAGD-HPPITP--MRSATEDMLG--KDAWRLYSYVCQHFLGTVSPDCKY 223
+A + H I P +R+ E + G KDA RLY + FL P +Y
Sbjct: 364 KENAQEAHEAIRPSDIRALPESLEGMEKDAVRLYDLIWCQFLACQMPPAQY 414
>sp|Q06AK7|TOP1_STAAU DNA topoisomerase 1 OS=Staphylococcus aureus GN=topA PE=3 SV=1
Length = 689
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++WT+ ++ + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+K+ + E+ ++++K++++ T L + A+ L + + M +A++L
Sbjct: 222 KDVEKITTALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST T A A + Y E ++ A +
Sbjct: 282 YEGIDLKKQGTIGLITYMRTDSTR------ISDTAKAEAKQYITNKYGESYTSKRKASGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L KD +RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPSSTMRTP-DDMKSFLTKDQYRLYKLIWERFVAS 379
>sp|Q8NWZ9|TOP1_STAAW DNA topoisomerase 1 OS=Staphylococcus aureus (strain MW2) GN=topA
PE=3 SV=2
Length = 689
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++WT+ ++ + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+K+ + E+ ++++K++++ T L + A+ L + + M +A++L
Sbjct: 222 KDVEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST T A A + Y E ++ A +
Sbjct: 282 YEGIDLKKQGTIGLITYMRTDSTR------ISDTAKAEAKQYITDKYGESYTSKRKASGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L KD +RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPSSTMRTP-DDMKSFLTKDQYRLYKLIWERFVAS 379
>sp|Q6G9W3|TOP1_STAAS DNA topoisomerase 1 OS=Staphylococcus aureus (strain MSSA476)
GN=topA PE=3 SV=1
Length = 689
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++WT+ ++ + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+K+ + E+ ++++K++++ T L + A+ L + + M +A++L
Sbjct: 222 KDVEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST T A A + Y E ++ A +
Sbjct: 282 YEGIDLKKQGTIGLITYMRTDSTR------ISDTAKAEAKQYITDKYGESYTSKRKASGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L KD +RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPSSTMRTP-DDMKSFLTKDQYRLYKLIWERFVAS 379
>sp|Q6GHI5|TOP1_STAAR DNA topoisomerase 1 OS=Staphylococcus aureus (strain MRSA252)
GN=topA PE=3 SV=1
Length = 689
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++WT+ ++ + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+K+ + E+ ++++K++++ T L + A+ L + + M +A++L
Sbjct: 222 KDVEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST T A A + Y E ++ A +
Sbjct: 282 YEGIDLKKQGTIGLITYMRTDSTR------ISDTAKAEAKQYITDKYGESYTSKRKASGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L KD +RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPSSTMRTP-DDMKSFLTKDQYRLYKLIWERFVAS 379
>sp|Q7A5Y5|TOP1_STAAN DNA topoisomerase 1 OS=Staphylococcus aureus (strain N315) GN=topA
PE=1 SV=1
Length = 689
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++WT+ ++ + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+K+ + E+ ++++K++++ T L + A+ L + + M +A++L
Sbjct: 222 KDVEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST T A A + Y E ++ A +
Sbjct: 282 YEGIDLKKQGTIGLITYMRTDSTR------ISDTAKAEAKQYITDKYGESYTSKRKASGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L KD +RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPSSTMRTP-DDMKSFLTKDQYRLYKLIWERFVAS 379
>sp|Q99UM1|TOP1_STAAM DNA topoisomerase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=topA PE=3 SV=1
Length = 689
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++WT+ ++ + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+K+ + E+ ++++K++++ T L + A+ L + + M +A++L
Sbjct: 222 KDVEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST T A A + Y E ++ A +
Sbjct: 282 YEGIDLKKQGTIGLITYMRTDSTR------ISDTAKAEAKQYITDKYGESYTSKRKASGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L KD +RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPSSTMRTP-DDMKSFLTKDQYRLYKLIWERFVAS 379
>sp|P34184|TOP1_BACPE DNA topoisomerase 1 OS=Bacillus pseudofirmus (strain OF4) GN=topA
PE=3 SV=3
Length = 707
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 7/215 (3%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW---ERQKLFDFDVATM 69
G QTP L V+R I F E FWT+ G + EW + ++F + A
Sbjct: 201 GRVQTPLLAEIVKRERLIEQFTAENFWTVKATFNNQGNVYEGEWFHEKENRIFKEEQAEQ 260
Query: 70 FQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQG 129
+LV +++ ++++ E+ + P L A +A G+ P ++ A+ LY +G
Sbjct: 261 LCELV-RNQSSTIMEMKEEMRTYQPPLLYXLSTLQMDAGNAFGFKPAETLKYAQSLYDKG 319
Query: 130 FISYPRT--ESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
++SYPRT E + + + L+ + +G ++ R + DH +
Sbjct: 320 YLSYPRTQDERITESDARELENNIQFLSGHDTFGALFPLPVSTLMNNKRYIGEVTDHHAL 379
Query: 188 TPMRSATEDM-LGKDAWRLYSYVCQHFLGTVSPDC 221
+D L +D +Y V + L PD
Sbjct: 380 LITDKIPKDKDLSEDEKSIYHLVVKRILAAHYPDV 414
>sp|Q9YC75|RGYR2_AERPE Reverse gyrase 2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=rgy2 PE=3 SV=2
Length = 1215
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 79/186 (42%), Gaps = 38/186 (20%)
Query: 13 GPCQTPTLGFCVQRYLQ-------ITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFD 65
G QTP LG+ V RY + + FK Y QN +LE E K ++
Sbjct: 836 GRVQTPVLGWIVDRYREWQDTRGYLVIFKLSSGGRTS-YFTQN----RLEVENLKRVEW- 889
Query: 66 VATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
LEV+DI+ K E + P T L AS LG +AM++A+ L
Sbjct: 890 --------------LEVVDIAGKTEERNPPPPYTTDEYLYDASRKLGLSAGLAMKIAQDL 935
Query: 126 YTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHP 185
+ G I+Y RT+ST + G AL +Y+ EG A+PR + G H
Sbjct: 936 FESGLITYHRTDSTRVSPT----GVKLAL-------EYLASRGLEGEAQPRGWGEGGAHE 984
Query: 186 PITPMR 191
I P+R
Sbjct: 985 AIRPVR 990
>sp|P0A2I1|TOP1_SALTY DNA topoisomerase 1 OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=topA PE=3 SV=1
Length = 865
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 30/223 (13%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVAT 68
L G Q+ + V+R +I +F PE+FW + +G L L+ Q F
Sbjct: 191 LSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPSGEALPLQVTHQNDKPFRPVN 250
Query: 69 MFQKL----VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
Q L +++ V++ +K S T L + AS+ LG+G + M +A+R
Sbjct: 251 REQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQR 310
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG----DYVERLLAEG---YAKPRS 177
LY G+I+Y RT+ST LS A N V G ++ ++ L + YA +
Sbjct: 311 LYEAGYITYMRTDST----------NLSQDAVNMVRGYIGDNFGKKYLPDNPNQYASKEN 360
Query: 178 GTDAGDHPPITP-----MRSATEDMLGKDAWRLYSYVCQHFLG 215
+A H I P M + +DM DA +LY + + F+
Sbjct: 361 SQEA--HEAIRPSDVAVMAESLKDMEA-DAQKLYQLIWRQFVA 400
>sp|P0A2I2|TOP1_SALTI DNA topoisomerase 1 OS=Salmonella typhi GN=topA PE=3 SV=1
Length = 865
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 30/223 (13%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVAT 68
L G Q+ + V+R +I +F PE+FW + +G L L+ Q F
Sbjct: 191 LSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPSGEALPLQVTHQNDKPFRPVN 250
Query: 69 MFQKL----VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
Q L +++ V++ +K S T L + AS+ LG+G + M +A+R
Sbjct: 251 REQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQR 310
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG----DYVERLLAEG---YAKPRS 177
LY G+I+Y RT+ST LS A N V G ++ ++ L + YA +
Sbjct: 311 LYEAGYITYMRTDST----------NLSQDAVNMVRGYIGDNFGKKYLPDNPNQYASKEN 360
Query: 178 GTDAGDHPPITP-----MRSATEDMLGKDAWRLYSYVCQHFLG 215
+A H I P M + +DM DA +LY + + F+
Sbjct: 361 SQEA--HEAIRPSDVAVMAESLKDMEA-DAQKLYQLIWRQFVA 400
>sp|Q5HGI2|TOP1_STAAC DNA topoisomerase 1 OS=Staphylococcus aureus (strain COL) GN=topA
PE=3 SV=1
Length = 689
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++WT+ ++ + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+K+ + E+ ++++K++++ T L + A+ L + + M +A++L
Sbjct: 222 KDVEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST T A + Y E ++ A +
Sbjct: 282 YEGIDLKKQGTIGLITYMRTDSTR------ISDTAKVEAKQYITDKYGESYTSKRKASGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L KD +RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPSSTMRTP-DDMKSFLTKDQYRLYKLIWERFVAS 379
>sp|Q2FZ32|TOP1_STAA8 DNA topoisomerase 1 OS=Staphylococcus aureus (strain NCTC 8325)
GN=topA PE=3 SV=2
Length = 689
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++WT+ ++ + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+K+ + E+ ++++K++++ T L + A+ L + + M +A++L
Sbjct: 222 KDVEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST T A + Y E ++ A +
Sbjct: 282 YEGIDLKKQGTIGLITYMRTDSTR------ISDTAKVEAKQYITDKYGESYTSKRKASGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L KD +RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPSSTMRTP-DDMKSFLTKDQYRLYKLIWERFVAS 379
>sp|Q2FHI8|TOP1_STAA3 DNA topoisomerase 1 OS=Staphylococcus aureus (strain USA300)
GN=topA PE=3 SV=2
Length = 689
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++WT+ ++ + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+K+ + E+ ++++K++++ T L + A+ L + + M +A++L
Sbjct: 222 KDVEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST T A + Y E ++ A +
Sbjct: 282 YEGIDLKKQGTIGLITYMRTDSTR------ISDTAKVEAKQYITDKYGESYTSKRKASGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L KD +RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPSSTMRTP-DDMKSFLTKDQYRLYKLIWERFVAS 379
>sp|Q2YXL8|TOP1_STAAB DNA topoisomerase 1 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=topA PE=3 SV=2
Length = 689
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++W + ++ + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWIIEGEFRYKKSKFNAKFLHYKNKPFKLKTK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+K+ + E+ ++++K++++ T L + A+ L + + M +A++L
Sbjct: 222 KDIEKITAALDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST T A A + Y E ++ A +
Sbjct: 282 YEGIDLKKQGTIGLITYMRTDSTR------ISDTAKAEAKQYITDKYGESYTSKRKASGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L KD +RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPSSTMRTP-DDMKSFLTKDQYRLYKLIWERFVAS 379
>sp|Q9X3X7|TOP1_ZYMMO DNA topoisomerase 1 OS=Zymomonas mobilis subsp. mobilis (strain
ATCC 31821 / ZM4 / CP4) GN=topA PE=3 SV=3
Length = 1212
Score = 58.5 bits (140), Expect = 4e-08, Method: Composition-based stats.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 15/213 (7%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN--GYELKL-EWERQKLFDFDVATM 69
G Q+ L V R +I FKP+++W++ + + G+ +L +W QKL +A
Sbjct: 166 GRVQSVALRLVVDREQEIEGFKPQEYWSVEADMEADSIGFTSRLIQWRGQKLEKLSIADK 225
Query: 70 FQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
Q Q + V ++ K S+ T L + A+ LG+ M+LA+ L
Sbjct: 226 TQAEAAQSDVESGHFTVSNVETKPVSRNPQPPFTTSTLQQEAARKLGFAASHTMRLAQSL 285
Query: 126 YTQGFISYPRTESTAYPSS--FDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGD 183
Y +G I+Y RT+ S R T++ + G YV + K ++ +A
Sbjct: 286 YEEGLITYMRTDGVQMDESAIAAARKTITQRYD----GGYVPDKPRQYQVKAKNAQEA-- 339
Query: 184 HPPITPMRSATEDMLGKDAWRLYSYVCQHFLGT 216
H I P + + D RLY + + L +
Sbjct: 340 HEAIRPTDFSRDKAASGDHARLYELIWKRALAS 372
>sp|Q9KRB2|TOP1_VIBCH DNA topoisomerase 1 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=topA PE=3 SV=1
Length = 876
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 98/221 (44%), Gaps = 26/221 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQKLFDFDVAT 68
L G Q+ + V+R +I +F PE+FW ++ L + + +L ++ F
Sbjct: 199 LSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVN 258
Query: 69 MFQKLV----MQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+ L + EV +K + T L + AS+ LGYG + M LA+R
Sbjct: 259 ETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQR 318
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGY--AKPR---SGT 179
LY G+I+Y RT+ST LSA A + G Y+ + E Y ++P S
Sbjct: 319 LYEAGYITYMRTDST----------NLSAEAVENLRG-YITKHYGEAYLPSQPNVYGSKQ 367
Query: 180 DAGD-HPPITP--MRSATEDMLG--KDAWRLYSYVCQHFLG 215
+A + H I P + +D+ G DA +LY+ + F+
Sbjct: 368 NAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVA 408
>sp|P06612|TOP1_ECOLI DNA topoisomerase 1 OS=Escherichia coli (strain K12) GN=topA PE=1
SV=2
Length = 865
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 30/231 (12%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVAT 68
L G Q+ + V+R +I +F PE+FW + +G L L+ Q F
Sbjct: 191 LSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVN 250
Query: 69 MFQKL----VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
Q +++ V++ +K + T L + AS+ LG+G + M +A+R
Sbjct: 251 KEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQR 310
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG----DYVERLLAEG---YAKPRS 177
LY G+I+Y RT+ST LS A N V G ++ ++ L E YA +
Sbjct: 311 LYEAGYITYMRTDST----------NLSQDAVNMVRGYISDNFGKKYLPESPNQYASKEN 360
Query: 178 GTDAGDHPPITP-----MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
+A H I P M + +DM DA +LY + + F+ KY
Sbjct: 361 SQEA--HEAIRPSDVNVMAESLKDMEA-DAQKLYQLIWRQFVACQMTPAKY 408
>sp|Q8CRF7|TOP3_STAES DNA topoisomerase 3 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=topB PE=3 SV=1
Length = 711
Score = 57.4 bits (137), Expect = 7e-08, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G QTPT+ R +I FKPEK++TL + +GY+L L+ +++ ++ +
Sbjct: 185 LSLGRVQTPTIQIVKSRQDEINYFKPEKYYTLS--INVDGYDLNLKQQKRYKDKKELELI 242
Query: 70 FQKLVMQD-RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
K+ Q+ +ILEV + ++S +P N +L + A GP+ + + LY +
Sbjct: 243 EHKIKHQEGKILEV--KGKNKKSYAQPL-FNLTDLQQEAYKRYKMGPKETLNTLQHLYER 299
Query: 129 -GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDY---VERLLAEGYAKPR---SGTDA 181
++YPRT+S D T+ + DY V L++E ++ +
Sbjct: 300 HKLVTYPRTDSNYLTD--DMVDTIQERLRAILATDYKSHVRDLISESFSSKMHIFNNQKV 357
Query: 182 GDHPPITP--MRSATEDMLGKDAWRLYSYVCQHFL 214
DH I P +R + E L + +++Y + + FL
Sbjct: 358 SDHHAIIPTEVRPSIEQ-LSQREFKIYMLIAERFL 391
>sp|Q5HLZ4|TOP3_STAEQ DNA topoisomerase 3 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=topB PE=3 SV=1
Length = 711
Score = 57.4 bits (137), Expect = 8e-08, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATM 69
L G QTPT+ R +I FKPEK++TL + +GY+L L+ +++ ++ +
Sbjct: 185 LSLGRVQTPTIQIVKSRQDEINYFKPEKYYTLS--INVDGYDLNLKQQKRYKDKKELELI 242
Query: 70 FQKLVMQD-RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
K+ Q+ +ILEV + ++S +P N +L + A GP+ + + LY +
Sbjct: 243 EHKIKHQEGKILEV--KGKNKKSYAQPL-FNLTDLQQEAYKHYKMGPKETLNTLQHLYER 299
Query: 129 -GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDY---VERLLAEGYAKPR---SGTDA 181
++YPRT+S D T+ + DY V L++E ++ +
Sbjct: 300 HKLVTYPRTDSNYLTD--DMVDTIQERLRAILATDYKSHVRDLISESFSSKMHIFNNQKV 357
Query: 182 GDHPPITP--MRSATEDMLGKDAWRLYSYVCQHFL 214
DH I P +R + E L + +++Y + + FL
Sbjct: 358 SDHHAIIPTEVRPSIEQ-LSQREFKIYMLIAERFL 391
>sp|Q81IH1|TOP3_BACCR DNA topoisomerase 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=topB PE=3 SV=1
Length = 729
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 20/224 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE----RQKLFDFD-VA 67
G QTPT+ R +I +FK + ++ + Q +LKL W+ + F+ + +
Sbjct: 189 GRVQTPTVAMIASREDEIKNFKAQTYYGIE---AQTMEKLKLTWQDANGNSRSFNKEKID 245
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ ++L Q+ V++I +KQ+ P + L + A+ GY + + + ++LY
Sbjct: 246 GIVKRLDKQNAT--VVEIDKKQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYE 303
Query: 128 Q-GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDY---VERLLAEGYAKPRSGTD--- 180
Q ++YPRT+S Y SS D GTL G+Y ++L + +S D
Sbjct: 304 QHKVLTYPRTDSR-YISS-DIVGTLPERLKACGVGEYRPFAHKVLQKPIKPNKSFVDDSK 361
Query: 181 AGDHPPITPMRSATEDMLGKDAWR-LYSYVCQHFLGTVSPDCKY 223
DH I P D R +Y V + FL + P +Y
Sbjct: 362 VSDHHAIIPTEGYVNFSAFTDKERKIYDLVVKRFLAVLFPAFEY 405
>sp|Q49X35|TOP1_STAS1 DNA topoisomerase 1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=topA
PE=3 SV=1
Length = 688
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 32/228 (14%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++W + + + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWKIEGEFRYKKTKFTAKFLHFKNKPFKLTEK 221
Query: 68 TMFQKLVMQ--DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
+K+ Q EV +++K++++ T L + A+ L + + M LA++L
Sbjct: 222 ADVEKITTQLDGDQFEVTKVTKKEKTRYPANPFTTSTLQQEAARKLNFKARKTMMLAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST +S A + +Y++ Y R
Sbjct: 282 YEGIDLKKQGTVGLITYMRTDSTR----------ISDQAQSEA-KNYIQETYGNDYTSNR 330
Query: 177 SGTDAGD---HPPITP---MRSATE--DMLGKDAWRLYSYVCQHFLGT 216
GD H I P +R+ E + L +D RLY + + F+ +
Sbjct: 331 KSKGQGDQDAHEAIRPSSTLRTPNEMKNFLTRDQHRLYKLIWERFVAS 378
>sp|Q8CSU3|TOP1_STAES DNA topoisomerase 1 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=topA PE=3 SV=1
Length = 689
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++W++ ++ + K + K + +
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWSIEGEFRYKKSKFTAKFLHYKNKPYKLNNK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
Q++ + E+ +++ K++++ T L + A+ L + + M LA++L
Sbjct: 222 DDVQRITEALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST +S + A + Y E+ +++ + +
Sbjct: 282 YEGIDLKRQGTVGLITYMRTDSTRISTS------AKSEAQQYINDKYGEQYVSQRKSSGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L +D RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPTSTMRTP-DDMKAFLTRDQHRLYKLIWERFVAS 379
>sp|Q5HPU2|TOP1_STAEQ DNA topoisomerase 1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=topA PE=3 SV=1
Length = 689
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++W++ ++ + K + K + +
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWSIEGEFRYKKSKFTAKFLHYKNKPYKLNNK 221
Query: 68 TMFQKL--VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERL 125
Q++ + E+ +++ K++++ T L + A+ L + + M LA++L
Sbjct: 222 DDVQRITEALNGDQFEITNVNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQL 281
Query: 126 Y---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPR 176
Y T G I+Y RT+ST +S + A + Y E+ +++ + +
Sbjct: 282 YEGIDLKRQGTVGLITYMRTDSTRISTS------AKSEAQQYINDKYGEQYVSQRKSSGK 335
Query: 177 SGTDAGDHPPITP---MRSATEDM---LGKDAWRLYSYVCQHFLGT 216
G D H I P MR+ +DM L +D RLY + + F+ +
Sbjct: 336 QG-DQDAHEAIRPTSTMRTP-DDMKAFLTRDQHRLYKLIWERFVAS 379
>sp|Q8ZXT5|RGYR_PYRAE Reverse gyrase OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 /
DSM 7523 / JCM 9630 / NBRC 100827) GN=rgy PE=3 SV=1
Length = 1228
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 45/222 (20%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G QTP LG+ V Y + S K + + + L N +++L+ R DV + +K
Sbjct: 862 GRVQTPVLGWIVNTYEE--SLK-NRVYNVELQL--NDVDIRLQVPR------DVLDVLRK 910
Query: 73 LVMQDRILEVIDISEKQESKVRPCG-LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131
+ R+ I + ++ +V P T LL+ A + LG AM+LA+ L+ G I
Sbjct: 911 ---KKRV--AIKLVARERRQVNPPPPYTTDELLRDAVNKLGLSADYAMRLAQDLFESGLI 965
Query: 132 SYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDA--GDHPPITP 189
+Y RT+ST + A + +Y+ R EG KPRS +A G H I P
Sbjct: 966 TYHRTDSTRVST-----------AGIAIAREYIVRKFGEGVFKPRSWGEAEEGAHEAIRP 1014
Query: 190 MRSA-TEDMLG--------------KDAWRLYSYVCQHFLGT 216
R E++ G K ++LY + + F+ +
Sbjct: 1015 TRPIDVEELRGLVNAGVIQLAIQLTKSHYQLYDIIFRRFMAS 1056
>sp|P39814|TOP1_BACSU DNA topoisomerase 1 OS=Bacillus subtilis (strain 168) GN=topA PE=3
SV=1
Length = 691
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 101/237 (42%), Gaps = 47/237 (19%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLH------------PYLVQNGYELKLEWE 57
L G Q+ L + R +I FKPE++WT+ + +NG +L L E
Sbjct: 162 LSAGRVQSVALRLIIDREKEINDFKPEEYWTIDGTFLKGQETFEASFFGKNGKKLPLNSE 221
Query: 58 RQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQM 117
DV + +L +E + E++ + P T L + A+ L + +
Sbjct: 222 ------ADVKEILSQLKGNQYTVEKVTKKERKRNPALP--FTTSTLQQEAARKLNFRAKK 273
Query: 118 AMQLAERLY---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGD--YVER 166
M +A++LY T G I+Y RT+ST R + +A+ + D Y +
Sbjct: 274 TMMIAQQLYEGIDLGREGTVGLITYMRTDST--------RISNTAVDEAAAFIDQTYGKE 325
Query: 167 LLAEGYAKP-RSGTDAGD-HPPITP---MRSATE--DMLGKDAWRLYSYVCQHFLGT 216
L G KP + +A D H I P +R +E +LG+D RLY + + F+ +
Sbjct: 326 FLG-GKRKPAKKNENAQDAHEAIRPTSVLRKPSELKAVLGRDQMRLYKLIWERFVAS 381
>sp|Q4L5V2|TOP1_STAHJ DNA topoisomerase 1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=topA PE=3 SV=1
Length = 689
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 27/226 (11%)
Query: 10 LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL--VQNGYELKLEWERQKLFDFDVA 67
L G Q+ L + R +I +FKPE++W++ ++ + K + K F
Sbjct: 162 LSAGRVQSVALRLVIDRENEIRNFKPEEYWSIEGEFRYKKSKFTAKFLHYKNKPFKLKTK 221
Query: 68 TMFQKLVMQ---DRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
+K+ + D+ E+ ++++K++++ T L + A+ L + + M LA++
Sbjct: 222 KDVEKVTAELDGDK-FEITNVNKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMLAQQ 280
Query: 125 LY---------TQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKP 175
LY T G I+Y RT+ST T A + Y + L+ AK
Sbjct: 281 LYEGIDLKRQGTVGLITYMRTDSTRISQ------TAKDEAKQYIEDKYGKDYLSNRTAKG 334
Query: 176 RSGTDAGDHPPITP---MRSATE--DMLGKDAWRLYSYVCQHFLGT 216
+ G D H I P +R+ E L +D RLY + + F+ +
Sbjct: 335 KQG-DQDAHEAIRPTSTLRTPYEMKAYLTRDQHRLYKLIWERFVAS 379
>sp|Q65N90|TOP3_BACLD DNA topoisomerase 3 OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=topB PE=3 SV=2
Length = 727
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 18/223 (8%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQK-----LFDFDVA 67
G QTPTL +R I +FKP ++ L + +G + L W+ +K F+ V
Sbjct: 189 GRVQTPTLAMIAKREEDIKNFKPVPYFGLRAAV--DG--MTLTWQDKKTSQTRTFNASVT 244
Query: 68 TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
+ +Q + ++D+ + + P + L + A G+ + + + ++LY
Sbjct: 245 SQLAG-ALQGKPAVIVDLKKTAKKSFAPGLYDLTELQRDAHKRFGFSAKETLSVLQKLYE 303
Query: 128 Q-GFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRS---GTDA 181
Q ++YPRT+S + + L + P + +V R+L G +S
Sbjct: 304 QHKLVTYPRTDSRFLSNDIVPTLKDRLEGMQVKP-YAQHVARILKRGVKANKSFVNDAKV 362
Query: 182 GDHPPITPMRSATE-DMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
DH I P L + +LY + + FL + P +Y
Sbjct: 363 SDHHAIIPTEEPLALGALSEKERKLYDLIAKRFLAVLMPPFEY 405
>sp|O51934|RGYR_THEMA Reverse gyrase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rgy PE=1 SV=1
Length = 1104
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 44/222 (19%)
Query: 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQK 72
G Q+ LG+ V+R + K EK +TL +++NG L++E +
Sbjct: 752 GRVQSTVLGWIVEREEEYK--KSEKDFTL--LVLENGVNLEVEGK--------------- 792
Query: 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132
+ D ++ V+++ E +E K T + L S L G Q M + + L+ +GFI+
Sbjct: 793 --IADDVVTVVELQEAEEEKNPLPPYTTSSALSEISQKLRLGVQEVMDILQDLFEKGFIT 850
Query: 133 YPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMR- 191
Y RT+ST +L V Y+ ++ E RS + G H I P++
Sbjct: 851 YHRTDSTRI-----------SLEGQNVARTYLRKIGKEDIFMGRSWSTEGAHEAIRPVKP 899
Query: 192 ---SATEDM--------LGKDAWRLYSYVCQHFLGTVSPDCK 222
E+M L K R+Y + FL + S K
Sbjct: 900 IDARELEEMIEEGLIADLTKKHLRVYELIFNRFLASQSAAVK 941
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,986,948
Number of Sequences: 539616
Number of extensions: 3314381
Number of successful extensions: 7218
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 7086
Number of HSP's gapped (non-prelim): 127
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)