Query 045217
Match_columns 224
No_of_seqs 193 out of 1074
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 19:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i7d_A DNA topoisomerase III; 100.0 3E-63 1E-67 476.7 21.0 217 5-224 188-421 (659)
2 1mw9_X DNA topoisomerase I; de 100.0 7.2E-60 2.4E-64 449.2 21.6 212 4-224 185-409 (592)
3 2gai_A DNA topoisomerase I; zi 100.0 1.5E-58 5.3E-63 442.8 17.8 205 4-224 157-379 (633)
4 4ddu_A Reverse gyrase; topoiso 100.0 9.5E-52 3.3E-56 416.7 14.7 184 7-224 746-943 (1104)
5 1gku_B Reverse gyrase, TOP-RG; 100.0 3.4E-50 1.2E-54 404.1 15.8 177 7-224 708-898 (1054)
6 1mw9_X DNA topoisomerase I; de 94.3 0.1 3.4E-06 49.5 7.7 115 16-132 387-511 (592)
7 2gai_A DNA topoisomerase I; zi 92.1 0.097 3.3E-06 50.0 3.9 113 18-133 359-480 (633)
8 1i7d_A DNA topoisomerase III; 91.6 0.089 3E-06 50.5 3.0 116 16-132 399-542 (659)
9 2xvc_A ESCRT-III, SSO0910; cel 91.0 0.23 8E-06 32.4 3.6 27 106-132 30-56 (59)
10 2vn2_A DNAD, chromosome replic 83.2 1.5 5.3E-05 32.6 4.7 53 99-155 53-107 (128)
11 2v79_A DNA replication protein 78.5 1.6 5.3E-05 33.2 3.3 50 106-155 56-107 (135)
12 1p6r_A Penicillinase repressor 67.9 9.5 0.00033 25.4 5.0 39 97-135 23-61 (82)
13 4ddu_A Reverse gyrase; topoiso 65.7 18 0.00063 36.4 8.4 113 12-133 917-1037(1104)
14 1tbx_A ORF F-93, hypothetical 62.8 12 0.00042 25.6 4.9 37 97-133 22-58 (99)
15 1q1h_A TFE, transcription fact 58.4 9.6 0.00033 26.8 3.7 33 98-134 34-66 (110)
16 2qvo_A Uncharacterized protein 58.1 12 0.0004 25.8 4.0 31 104-134 33-63 (95)
17 2heo_A Z-DNA binding protein 1 55.9 10 0.00034 24.7 3.2 36 97-136 25-60 (67)
18 2fbi_A Probable transcriptiona 55.7 13 0.00045 26.6 4.2 29 106-134 55-83 (142)
19 2htj_A P fimbrial regulatory p 55.1 12 0.0004 25.0 3.5 32 98-133 15-46 (81)
20 2dk5_A DNA-directed RNA polyme 54.2 15 0.00051 25.7 4.0 29 104-132 39-67 (91)
21 2d1h_A ST1889, 109AA long hypo 54.0 13 0.00045 25.4 3.7 34 98-135 37-70 (109)
22 2nnn_A Probable transcriptiona 53.7 15 0.00051 26.2 4.2 28 106-133 57-84 (140)
23 3h0d_A CTSR; protein DNA compl 53.6 33 0.0011 26.7 6.2 32 101-132 78-111 (155)
24 3hrs_A Metalloregulator SCAR; 52.7 12 0.0004 30.1 3.7 40 104-143 23-62 (214)
25 3bpv_A Transcriptional regulat 52.7 13 0.00045 26.5 3.7 29 105-133 47-75 (138)
26 1sd4_A Penicillinase repressor 52.3 20 0.00069 25.4 4.7 39 97-135 24-62 (126)
27 3r0a_A Putative transcriptiona 52.3 13 0.00046 27.0 3.7 32 98-133 43-74 (123)
28 1gku_B Reverse gyrase, TOP-RG; 51.6 21 0.0007 35.8 6.0 112 13-133 873-991 (1054)
29 1oyi_A Double-stranded RNA-bin 51.6 15 0.00051 25.5 3.5 29 106-134 35-63 (82)
30 2hr3_A Probable transcriptiona 51.1 17 0.00059 26.3 4.2 30 105-134 54-83 (147)
31 2frh_A SARA, staphylococcal ac 50.7 16 0.00055 26.3 3.9 31 104-134 56-86 (127)
32 1ub9_A Hypothetical protein PH 50.5 20 0.00067 24.2 4.2 28 106-133 35-62 (100)
33 2nyx_A Probable transcriptiona 50.4 14 0.00048 27.8 3.7 29 106-134 64-92 (168)
34 1jgs_A Multiple antibiotic res 50.3 15 0.00052 26.3 3.7 29 106-134 53-81 (138)
35 1sfx_A Conserved hypothetical 50.0 16 0.00056 24.7 3.7 29 106-134 39-67 (109)
36 3cuo_A Uncharacterized HTH-typ 50.0 17 0.00058 24.5 3.7 35 97-135 38-72 (99)
37 2a61_A Transcriptional regulat 49.9 15 0.00053 26.4 3.7 29 106-134 52-80 (145)
38 3hsr_A HTH-type transcriptiona 49.7 16 0.00053 26.6 3.7 30 106-135 55-84 (140)
39 2fbh_A Transcriptional regulat 49.7 16 0.00053 26.4 3.7 30 106-135 57-86 (146)
40 3bro_A Transcriptional regulat 49.6 16 0.00054 26.2 3.7 35 97-135 50-84 (141)
41 4ev0_A Transcription regulator 49.4 14 0.00049 28.4 3.7 32 104-135 166-197 (216)
42 3bdd_A Regulatory protein MARR 49.2 16 0.00055 26.1 3.7 29 106-134 50-78 (142)
43 2eth_A Transcriptional regulat 49.1 19 0.00063 26.5 4.1 29 106-134 63-91 (154)
44 3f3x_A Transcriptional regulat 49.0 16 0.00055 26.4 3.7 31 105-135 54-84 (144)
45 1ku9_A Hypothetical protein MJ 49.0 21 0.00071 25.7 4.3 35 97-135 41-75 (152)
46 3dv8_A Transcriptional regulat 48.7 15 0.00052 28.3 3.7 33 104-136 172-204 (220)
47 2gxg_A 146AA long hypothetical 47.7 21 0.00072 25.7 4.2 29 106-134 55-83 (146)
48 3cdh_A Transcriptional regulat 47.7 21 0.0007 26.2 4.2 31 105-135 61-91 (155)
49 1lj9_A Transcriptional regulat 47.6 18 0.0006 26.1 3.7 30 105-134 47-76 (144)
50 2rdp_A Putative transcriptiona 47.4 18 0.0006 26.3 3.7 29 106-134 61-89 (150)
51 3tgn_A ADC operon repressor AD 47.2 18 0.00062 26.1 3.7 30 106-135 56-85 (146)
52 1okr_A MECI, methicillin resis 47.1 28 0.00097 24.5 4.7 42 97-138 24-65 (123)
53 2oz6_A Virulence factor regula 47.1 17 0.00057 27.8 3.7 32 104-135 167-198 (207)
54 3b02_A Transcriptional regulat 47.0 18 0.00061 27.6 3.9 33 104-136 142-174 (195)
55 2pg4_A Uncharacterized protein 46.6 13 0.00045 25.4 2.7 28 105-132 34-62 (95)
56 1s3j_A YUSO protein; structura 46.6 18 0.00061 26.4 3.7 29 106-134 56-84 (155)
57 3oop_A LIN2960 protein; protei 46.2 19 0.00065 26.0 3.7 30 106-135 56-85 (143)
58 3cjn_A Transcriptional regulat 46.1 19 0.00064 26.7 3.7 29 106-134 71-99 (162)
59 2x4h_A Hypothetical protein SS 45.8 20 0.00067 26.0 3.7 30 106-135 36-65 (139)
60 3eco_A MEPR; mutlidrug efflux 45.7 20 0.00067 25.7 3.7 35 96-134 46-80 (139)
61 2p8t_A Hypothetical protein PH 45.7 18 0.0006 29.3 3.6 39 105-144 34-72 (200)
62 3bj6_A Transcriptional regulat 45.4 20 0.00067 26.1 3.7 29 106-134 59-87 (152)
63 3e6m_A MARR family transcripti 45.3 23 0.00079 26.3 4.2 31 106-136 72-102 (161)
64 2qww_A Transcriptional regulat 44.7 20 0.0007 26.1 3.7 28 106-133 60-87 (154)
65 2k4b_A Transcriptional regulat 44.7 14 0.00047 26.3 2.6 38 97-134 49-86 (99)
66 3ryp_A Catabolite gene activat 44.6 19 0.00066 27.5 3.7 32 104-135 170-201 (210)
67 3dkw_A DNR protein; CRP-FNR, H 44.4 19 0.00064 27.9 3.6 33 104-136 181-213 (227)
68 3e97_A Transcriptional regulat 44.3 21 0.00071 27.9 3.9 33 104-136 178-210 (231)
69 1on2_A Transcriptional regulat 44.1 21 0.00072 26.0 3.7 31 106-136 27-57 (142)
70 2qq9_A Diphtheria toxin repres 44.1 21 0.00072 28.8 3.9 39 105-143 28-66 (226)
71 2fa5_A Transcriptional regulat 43.9 21 0.00072 26.3 3.7 29 106-134 68-96 (162)
72 3iwz_A CAP-like, catabolite ac 43.8 20 0.00068 27.8 3.7 32 104-135 190-221 (230)
73 2cfx_A HTH-type transcriptiona 43.5 22 0.00075 26.3 3.7 27 106-132 24-50 (144)
74 2pex_A Transcriptional regulat 43.3 22 0.00076 26.0 3.7 29 106-134 66-94 (153)
75 2zcw_A TTHA1359, transcription 43.1 21 0.00072 27.3 3.7 32 104-135 149-180 (202)
76 3i4p_A Transcriptional regulat 43.0 18 0.00061 27.5 3.2 36 106-141 22-59 (162)
77 2w25_A Probable transcriptiona 42.5 22 0.00077 26.3 3.7 27 106-132 26-52 (150)
78 3nrv_A Putative transcriptiona 42.4 24 0.0008 25.6 3.7 30 106-135 59-88 (148)
79 1z91_A Organic hydroperoxide r 42.2 26 0.00088 25.3 3.9 30 105-134 58-87 (147)
80 2pn6_A ST1022, 150AA long hypo 42.2 20 0.00068 26.6 3.3 27 106-132 22-48 (150)
81 3bja_A Transcriptional regulat 42.1 15 0.00052 26.2 2.5 29 106-134 52-80 (139)
82 1xmk_A Double-stranded RNA-spe 41.8 20 0.00068 24.5 2.9 29 104-132 28-57 (79)
83 3s2w_A Transcriptional regulat 41.7 24 0.00082 26.1 3.7 30 106-135 69-98 (159)
84 2gau_A Transcriptional regulat 41.4 27 0.00091 27.2 4.1 33 104-136 183-215 (232)
85 2cg4_A Regulatory protein ASNC 41.1 23 0.00077 26.4 3.5 28 106-133 27-54 (152)
86 2bv6_A MGRA, HTH-type transcri 40.9 18 0.00061 26.1 2.8 30 105-134 55-84 (142)
87 3kcc_A Catabolite gene activat 40.4 25 0.00086 28.3 3.9 32 104-135 220-251 (260)
88 2hzt_A Putative HTH-type trans 40.0 34 0.0012 23.9 4.1 32 98-133 28-60 (107)
89 2dbb_A Putative HTH-type trans 39.8 29 0.00099 25.7 3.9 27 106-132 28-54 (151)
90 3fm5_A Transcriptional regulat 39.7 20 0.00068 26.2 2.9 30 106-135 59-88 (150)
91 4aik_A Transcriptional regulat 39.6 26 0.0009 26.1 3.7 32 104-135 49-80 (151)
92 1ft9_A Carbon monoxide oxidati 39.6 25 0.00086 27.3 3.7 34 104-137 166-199 (222)
93 2fmy_A COOA, carbon monoxide o 39.5 27 0.00093 27.0 3.9 33 104-136 170-203 (220)
94 4hbl_A Transcriptional regulat 39.3 26 0.00088 25.6 3.5 30 105-134 59-88 (149)
95 3la7_A Global nitrogen regulat 39.3 25 0.00087 27.9 3.7 33 104-136 196-228 (243)
96 3k2z_A LEXA repressor; winged 39.2 32 0.0011 26.9 4.2 37 104-140 27-63 (196)
97 2p5v_A Transcriptional regulat 38.9 27 0.00093 26.3 3.7 27 106-132 29-55 (162)
98 3d0s_A Transcriptional regulat 38.7 26 0.0009 27.2 3.7 32 104-135 180-211 (227)
99 2kko_A Possible transcriptiona 38.7 28 0.00097 24.4 3.5 35 97-135 38-72 (108)
100 2v4x_A JSRV capsid, capsid pro 38.7 35 0.0012 26.0 4.1 43 89-131 7-49 (140)
101 2nr3_A Hypothetical protein; A 38.2 21 0.0007 28.5 2.8 44 89-132 37-86 (183)
102 3jth_A Transcription activator 38.1 31 0.0011 23.4 3.6 36 97-136 36-71 (98)
103 3ech_A MEXR, multidrug resista 38.1 19 0.00064 26.1 2.5 30 106-135 56-85 (142)
104 2oqg_A Possible transcriptiona 37.9 38 0.0013 23.4 4.1 32 98-133 35-66 (114)
105 3nqo_A MARR-family transcripti 37.7 28 0.00096 26.8 3.7 35 97-135 57-91 (189)
106 2g9w_A Conserved hypothetical 37.6 36 0.0012 24.9 4.1 39 97-135 24-62 (138)
107 2ia0_A Putative HTH-type trans 36.6 30 0.001 26.6 3.7 27 106-132 36-62 (171)
108 3g3z_A NMB1585, transcriptiona 36.4 45 0.0015 23.9 4.5 30 106-135 50-79 (145)
109 1u2w_A CADC repressor, cadmium 35.7 37 0.0013 24.4 3.8 34 98-135 57-90 (122)
110 3kp7_A Transcriptional regulat 35.5 22 0.00074 26.0 2.5 28 106-133 56-83 (151)
111 3kp1_E D-ornithine aminomutase 35.4 39 0.0013 25.1 3.8 36 97-132 43-78 (121)
112 3b73_A PHIH1 repressor-like pr 35.3 35 0.0012 24.7 3.6 27 108-134 34-62 (111)
113 3bz6_A UPF0502 protein pspto_2 35.3 24 0.00083 28.1 2.8 44 89-132 37-86 (183)
114 1y0u_A Arsenical resistance op 35.2 39 0.0013 22.9 3.7 34 98-135 44-77 (96)
115 3deu_A Transcriptional regulat 35.1 34 0.0012 25.7 3.7 34 98-135 69-102 (166)
116 3e6c_C CPRK, cyclic nucleotide 34.8 35 0.0012 27.0 3.9 32 105-136 181-212 (250)
117 1zyb_A Transcription regulator 34.8 31 0.001 27.1 3.5 32 104-135 189-220 (232)
118 3k0l_A Repressor protein; heli 34.7 24 0.00081 26.2 2.7 30 106-135 65-94 (162)
119 1em9_A GAG polyprotein capsid 34.2 39 0.0013 26.2 3.7 43 89-131 7-49 (154)
120 2fu4_A Ferric uptake regulatio 34.1 70 0.0024 20.8 4.8 38 96-133 32-70 (83)
121 4b8x_A SCO5413, possible MARR- 34.0 38 0.0013 24.9 3.7 30 106-135 56-85 (147)
122 1z7u_A Hypothetical protein EF 33.8 46 0.0016 23.4 4.0 28 106-133 40-68 (112)
123 3jw4_A Transcriptional regulat 33.6 20 0.00069 26.1 2.1 30 106-135 62-91 (148)
124 3boq_A Transcriptional regulat 33.2 19 0.00066 26.5 1.9 29 106-134 67-95 (160)
125 1r1u_A CZRA, repressor protein 33.0 43 0.0015 23.2 3.7 34 98-135 40-73 (106)
126 3u2r_A Regulatory protein MARR 32.9 27 0.00091 26.1 2.7 30 106-135 67-96 (168)
127 2y75_A HTH-type transcriptiona 32.7 48 0.0016 23.8 4.0 36 97-136 26-61 (129)
128 2bgc_A PRFA; bacterial infecti 32.5 37 0.0013 26.7 3.6 33 104-136 172-205 (238)
129 2fxa_A Protease production reg 32.5 42 0.0015 26.4 4.0 33 104-136 65-97 (207)
130 1qgp_A Protein (double strande 32.4 42 0.0014 22.4 3.4 28 106-133 36-63 (77)
131 2fsw_A PG_0823 protein; alpha- 32.2 56 0.0019 22.7 4.2 32 98-133 39-71 (107)
132 3df8_A Possible HXLR family tr 31.9 54 0.0019 23.1 4.1 30 100-133 45-75 (111)
133 2lkp_A Transcriptional regulat 31.3 34 0.0012 24.1 3.0 30 106-135 50-79 (119)
134 2f2e_A PA1607; transcription f 31.3 45 0.0015 24.9 3.7 32 98-133 38-69 (146)
135 2cyy_A Putative HTH-type trans 31.1 49 0.0017 24.4 4.0 28 106-133 26-53 (151)
136 2jt1_A PEFI protein; solution 30.7 51 0.0017 22.2 3.5 28 106-133 29-56 (77)
137 2h09_A Transcriptional regulat 30.5 46 0.0016 24.5 3.7 31 105-135 58-88 (155)
138 1i1g_A Transcriptional regulat 29.4 58 0.002 23.5 4.0 30 106-135 23-52 (141)
139 1qbj_A Protein (double-strande 29.3 51 0.0017 22.4 3.4 32 98-133 28-59 (81)
140 2jpc_A SSRB; DNA binding prote 29.2 65 0.0022 19.5 3.7 24 105-128 17-40 (61)
141 2kgf_A Capsid protein P27; ret 28.6 82 0.0028 24.0 4.7 41 91-131 14-54 (140)
142 1r7j_A Conserved hypothetical 28.3 55 0.0019 22.7 3.5 27 108-134 27-53 (95)
143 2b0l_A GTP-sensing transcripti 28.3 59 0.002 22.8 3.7 29 107-135 49-77 (102)
144 3i71_A Ethanolamine utilizatio 28.2 53 0.0018 21.4 3.0 26 106-131 23-48 (68)
145 3f6o_A Probable transcriptiona 28.2 56 0.0019 23.1 3.7 34 98-135 32-65 (118)
146 1sfu_A 34L protein; protein/Z- 27.9 71 0.0024 21.7 3.8 27 106-132 34-60 (75)
147 1yyv_A Putative transcriptiona 27.9 64 0.0022 23.6 4.0 31 98-132 49-80 (131)
148 3pqk_A Biofilm growth-associat 27.6 41 0.0014 23.0 2.7 34 98-135 37-70 (102)
149 2hgc_A YJCQ protein; SR346, st 27.5 42 0.0014 24.1 2.8 25 108-132 23-47 (102)
150 2e1c_A Putative HTH-type trans 27.5 58 0.002 24.9 3.9 30 106-135 46-75 (171)
151 3r4k_A Transcriptional regulat 27.1 55 0.0019 26.8 3.9 43 95-141 19-61 (260)
152 1r1t_A Transcriptional repress 27.1 50 0.0017 23.8 3.2 34 98-135 60-93 (122)
153 2xub_A DNA-directed RNA polyme 26.4 43 0.0015 30.8 3.4 29 108-136 381-409 (534)
154 1wi9_A Protein C20ORF116 homol 26.4 59 0.002 21.9 3.1 27 106-132 26-52 (72)
155 1fsh_A Dishevelled-1; three-he 26.2 84 0.0029 22.3 4.3 67 67-134 21-89 (105)
156 1uly_A Hypothetical protein PH 25.6 60 0.0021 25.5 3.7 32 98-133 34-65 (192)
157 1fx7_A Iron-dependent represso 24.9 67 0.0023 25.7 3.9 31 105-135 28-58 (230)
158 3g2b_A Coenzyme PQQ synthesis 24.9 1.1E+02 0.0036 21.4 4.5 48 65-132 43-94 (95)
159 2wte_A CSA3; antiviral protein 24.8 64 0.0022 26.5 3.9 29 106-134 171-199 (244)
160 3tqn_A Transcriptional regulat 24.8 72 0.0025 22.5 3.7 38 106-143 38-75 (113)
161 1o5l_A Transcriptional regulat 23.0 18 0.0006 28.1 0.0 32 104-135 167-198 (213)
162 3l7w_A Putative uncharacterize 23.0 98 0.0034 21.6 4.1 33 101-133 26-58 (108)
163 1p4x_A Staphylococcal accessor 22.7 45 0.0015 27.5 2.5 36 104-139 53-88 (250)
164 3neu_A LIN1836 protein; struct 22.3 84 0.0029 22.6 3.7 38 106-143 42-79 (125)
165 2k02_A Ferrous iron transport 22.3 94 0.0032 21.4 3.7 30 106-135 21-50 (87)
166 2ek5_A Predicted transcription 22.3 98 0.0033 22.5 4.1 38 106-143 33-70 (129)
167 3f6v_A Possible transcriptiona 22.2 79 0.0027 23.7 3.7 34 98-135 72-105 (151)
168 2fbk_A Transcriptional regulat 22.1 26 0.00089 26.6 0.8 34 98-135 87-120 (181)
169 1xn7_A Hypothetical protein YH 22.1 1E+02 0.0035 20.7 3.8 27 106-132 21-47 (78)
170 1ylf_A RRF2 family protein; st 21.8 80 0.0027 23.4 3.6 55 97-155 30-88 (149)
171 2jsc_A Transcriptional regulat 21.7 55 0.0019 23.2 2.5 28 108-135 41-68 (118)
172 3mq0_A Transcriptional repress 21.4 63 0.0022 26.7 3.2 41 96-141 44-84 (275)
173 2bzb_A Conserved domain protei 21.1 65 0.0022 20.9 2.5 23 103-126 17-39 (62)
174 1p4x_A Staphylococcal accessor 20.7 82 0.0028 25.8 3.7 25 108-132 181-205 (250)
175 1hry_A Human SRY; DNA, DNA-bin 20.6 1.1E+02 0.0038 19.7 3.7 29 196-224 44-75 (76)
176 2o03_A Probable zinc uptake re 20.4 1.7E+02 0.0057 21.1 5.1 37 96-132 25-62 (131)
No 1
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=100.00 E-value=3e-63 Score=476.65 Aligned_cols=217 Identities=18% Similarity=0.324 Sum_probs=185.1
Q ss_pred ccCCccccCcchhHHHHHHHHHHHHHHcCcCcceEEEEEEE-EecCeEEEEEEe-----------ccccCCHHHHHHHHH
Q 045217 5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWE-----------RQKLFDFDVATMFQK 72 (224)
Q Consensus 5 ~~~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~y~~i~~~~-~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~ 72 (224)
+++++||+||||||||+|||+||+||+||+|++||+|.+.+ ..+++.|.+.|. +++++|++.|+.+.+
T Consensus 188 ~~~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~yw~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~~~~ 267 (659)
T 1i7d_A 188 GYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVN 267 (659)
T ss_dssp TCCSCCCCCTTHHHHHHHHHHHHHHHHTCCCCEEEEEEEEEECTTCCEEEEEECCCGGGTTTBCTTCCBCCHHHHHHHHH
T ss_pred CCCCceecCccccchHHHHHHHHHHHHhCCCcceEEEEEEEecCCCcEEEEEEEeccccccccccccccCCHHHHHHHHH
Confidence 45678999999999999999999999999999999999999 555677999993 348999999999999
Q ss_pred HHccCCceEEEEEeeecccccCCCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhh-ccceeccCCCCcccCCCc--ChHH
Q 045217 73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT-QGFISYPRTESTAYPSSF--DFRG 149 (224)
Q Consensus 73 ~~~~~~~~~V~~v~~k~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE-~glITYPRTds~~l~~~~--~~~~ 149 (224)
.|.+ ..++|++|++++++++||+||||++||++||++|||||++||++||+||| +||||||||||++||+++ ++++
T Consensus 268 ~~~~-~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~Tm~iAQ~LYE~~glITYpRTDS~~ls~~~~~~~~~ 346 (659)
T 1i7d_A 268 RISG-QPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITFPRSDCRYLPEEHFAGRHA 346 (659)
T ss_dssp HHSS-CEEECCEEEEEEEEECCCCSBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCBSCSSCCCCCBCGGGGGGHHH
T ss_pred Hhcc-CCeEEEEEEeEEEEecCCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCeEeccCCCCcccCHHHHHHHHH
Confidence 9987 48999999999999999999999999999999999999999999999999 799999999999999986 6788
Q ss_pred HHHHHhc-CCchHHHHHHHhhcCCCCCCCCCCCCCCCCcccCCCC-CcCCCCHHHHHHHHHHHHHHHHhcCcCcccC
Q 045217 150 TLSALAN-NPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSA-TEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224 (224)
Q Consensus 150 ~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~k~~aH~AI~PT~~~-~~~~L~~~e~~iY~lI~~r~la~f~~~a~y~ 224 (224)
++..+.. .+.|+.++ .+......+..++++++||||||||... +.+ |+++|++||+||||||||+|||||+|+
T Consensus 347 ~i~~~~~~~~~~~~~~-~~~~~~~~r~~~~~kv~aH~AI~PT~~~~~~~-Ls~de~klY~LI~rRflA~~~~~a~~~ 421 (659)
T 1i7d_A 347 VMNAISVHAPDLLPQP-VVDPDIRNRCWDDKKVDAHHAIIPTARSSAIN-LTENEAKVYNLIARQYLMQFCPDAVFR 421 (659)
T ss_dssp HHHHHHHHSTTTCCCT-TCCTTCCCTTBCGGGCCSSCCBCBCSCCSCCC-CCHHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred HHHHHhccchhhhhhh-hccccccccccCCCccCCCCCcCCcCCCCccC-CCHHHHHHHHHHHHHHHHHhCchheEE
Confidence 8887753 23332210 0000011233456789999999999985 445 999999999999999999999999984
No 2
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=100.00 E-value=7.2e-60 Score=449.23 Aligned_cols=212 Identities=25% Similarity=0.378 Sum_probs=170.3
Q ss_pred cccCCccccCcchhHHHHHHHHHHHHHHcCcCcceEEEEEEEEe-cCeEEEEEEe--cc---ccCCHHHHHHHHHHHccC
Q 045217 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWE--RQ---KLFDFDVATMFQKLVMQD 77 (224)
Q Consensus 4 ~~~~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~-~~~~~~~~~~--~~---~~~~~~~a~~~~~~~~~~ 77 (224)
.++++.+|+||||||||+|||+||+||+||+|++||+|.+.+.. +|..|.+.|. .+ ++.+++.|+.+.+.|.+
T Consensus 185 ~~~~~~lS~GRVQtptL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~- 263 (592)
T 1mw9_X 185 KKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEK- 263 (592)
T ss_dssp HHTCTTCCCCTTHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECTTCCEEEEEEEEETTEECCCCSHHHHHHHHHHHHH-
T ss_pred hhhccccccCccchhHHHHHHHHHHHHHhCCCcceEEEEEEEecCCCcEEEEEEEecCCcccccCCHHHHHHHHHHhcC-
Confidence 34556899999999999999999999999999999999999965 4456887774 22 57789999999999876
Q ss_pred CceEEEEEeeecccccCCCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCcccCCCc--ChHHHHHHHh
Q 045217 78 RILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSF--DFRGTLSALA 155 (224)
Q Consensus 78 ~~~~V~~v~~k~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l~~~~--~~~~~l~~l~ 155 (224)
..++|++|++++++++||+||+|++||++||++|||||++||++||+|||+||||||||||++||+++ ++++.+..+
T Consensus 264 ~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~iAQ~LYE~glITYpRTDs~~ls~~~~~~~~~~i~~~- 342 (592)
T 1mw9_X 264 ARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDN- 342 (592)
T ss_dssp CCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTSBCCSCCCCCCCCHHHHHHHHHHHHHH-
T ss_pred CCeEEEEEEEEEEeccCCCCccHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCeeeccCCCCCccCHHHHHHHHHHHHHh-
Confidence 47999999999999999999999999999999999999999999999999999999999999999874 234444332
Q ss_pred cCCchHHHHHHHhhcCCCCCCC-CCCCCCCCCcccCCCC----CcCCCCHHHHHHHHHHHHHHHHhcCcCcccC
Q 045217 156 NNPVWGDYVERLLAEGYAKPRS-GTDAGDHPPITPMRSA----TEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224 (224)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~-~~k~~aH~AI~PT~~~----~~~~L~~~e~~iY~lI~~r~la~f~~~a~y~ 224 (224)
|+. .++........+ .++++||||||||... ....|+++|++||+||+|||||+||+||+|+
T Consensus 343 ----~g~---~~~~~~~~~~~~~~~~~~aH~AI~PT~~~~~~~~l~~Ls~~e~klY~LI~rrflA~~~~~a~~~ 409 (592)
T 1mw9_X 343 ----FGK---KYLPESPNQYASKENSQEAREAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYD 409 (592)
T ss_dssp ----TCG---GGSCSSCCCCC--------CCCBCBSCTTCCGGGCSSCCHHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred ----hhh---hhcccCCccccCCCCCCCCCCCEecccCccCccchhhCCHHHHHHHHHHHHHHHHHhCchhEEE
Confidence 221 112111111112 2346899999999752 2367999999999999999999999999984
No 3
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=100.00 E-value=1.5e-58 Score=442.77 Aligned_cols=205 Identities=25% Similarity=0.368 Sum_probs=165.5
Q ss_pred cccCCccccCcchhHHHHHHHHHHHHHHcCcCcceEEEEEEEEecCeEEEEEE--eccccCCHHHHHHHHHHHccCCceE
Q 045217 4 AVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW--ERQKLFDFDVATMFQKLVMQDRILE 81 (224)
Q Consensus 4 ~~~~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~ 81 (224)
.+++..||+||||||||+|||+||+||+||+|++||+|.+.+. + |.+.| ..++++|++.|+.+. .+ ..++
T Consensus 157 ~~~~~~lS~GRVQtptL~lIv~Re~eI~~F~p~~y~~i~~~~~--~--~~a~~~~~~~~~~~~~~a~~~~-~~---~~~~ 228 (633)
T 2gai_A 157 RNFKSNLSAGRVQSATLKLVCDREREILRFVPKKYHRITVNFD--G--LTAEIDVKEKKFFDAETLKEIQ-SI---DELV 228 (633)
T ss_dssp HHHSCCCTTHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEET--T--EEEEECCSSCCCCCHHHHHHHH-TC---CCEE
T ss_pred HhhhcccccCccchHHHHHHHHHHHHHHhCCCcceEEEEEEEe--e--EEEEEecCCcccCCHHHHHHHH-hC---CCeE
Confidence 3456789999999999999999999999999999999999984 2 88887 345788999999998 77 3699
Q ss_pred EEEEeeecccccCCCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhc--------cceeccCCCCcccCCCc--ChHHHH
Q 045217 82 VIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ--------GFISYPRTESTAYPSSF--DFRGTL 151 (224)
Q Consensus 82 V~~v~~k~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~--------glITYPRTds~~l~~~~--~~~~~l 151 (224)
|++|++++++++||+||||++||++||++|||||++||++||+|||+ ||||||||||++||+++ ++++.+
T Consensus 229 V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~iaQ~LYE~~~~~~~~~glITYpRTDs~~ls~~~~~~~~~~i 308 (633)
T 2gai_A 229 VEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVETKDGHIAFITYMRTDSTRVSDYAKEEARNLI 308 (633)
T ss_dssp EEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEECSSSEECCBCCSCCSCCCCCHHHHHHHHHHH
T ss_pred EEEEEEEEEEecCCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccccCccceEEecCCCccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 99999999999999875 234444
Q ss_pred HHHhcCCchHHHHHHHhhcCCCCCCCCCC-CCCCCCcccCCCC-Cc----CCCCHHHHHHHHHHHHHHHHhcCcCcccC
Q 045217 152 SALANNPVWGDYVERLLAEGYAKPRSGTD-AGDHPPITPMRSA-TE----DMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224 (224)
Q Consensus 152 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~k-~~aH~AI~PT~~~-~~----~~L~~~e~~iY~lI~~r~la~f~~~a~y~ 224 (224)
... |+. .++....+...++++ ++||||||||... .+ +.|+++|++||+|||+||||+||+||+|+
T Consensus 309 ~~~-----~g~---~~~~~~~r~~~~~~~~~~aH~AI~PT~~~~~p~~~~~~L~~~e~klY~LI~rrflA~~~~~a~~~ 379 (633)
T 2gai_A 309 TEV-----FGE---EYVGSKRERRKSNAKIQDAHEAIRPTNVFMTPEEAGKYLNSDQKKLYELIWKRFLASQMKPSQYE 379 (633)
T ss_dssp HHH-----TCG---GGBC--------------CCCCBCBSCTTSCHHHHTTTSCHHHHHHHHHHHHHHHHHTBCCEEEE
T ss_pred HHH-----hhh---hhcccCCccccCCCCcCCCCCCcccccccCChhhhhhcCCHHHHHHHHHHHHHHHHHhCchheEE
Confidence 322 221 111111111122345 4589999999873 33 46999999999999999999999999984
No 4
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.5e-52 Score=416.67 Aligned_cols=184 Identities=29% Similarity=0.365 Sum_probs=150.9
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHcCcCcceEEEEEEEEecCeEEEEEEeccccCCHHHHHHHHHHHccCCceEEEEEe
Q 045217 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDIS 86 (224)
Q Consensus 7 ~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~V~~v~ 86 (224)
++++|+||||||||+|||+||+||+ +|++||+|. ...+|..|.+.|.++ + +.++|++|+
T Consensus 746 ~~~lS~GRVQtptL~liv~Re~ei~--~~~~~~~i~--~~~~~~~~~~~~~~~----------------~-~~~~V~~v~ 804 (1104)
T 4ddu_A 746 RSNLSAGRVQSTVLGWIVEREEEYK--KSEKDFTLL--VLENGVNLEVEGKIA----------------D-DVVTVVELQ 804 (1104)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHHTTT--TCCCCEEEE--EETTSCEEEEESCCC----------------C-CEEEEEEEE
T ss_pred CcccccCccccHHHHHHHHHHHHHh--ccCcEEEEE--EecCcEEEEeecccc----------------C-CcEEEEEEE
Confidence 3579999999999999999999999 667899983 344566676666431 2 579999999
Q ss_pred eecccccCCCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCcccCCCc--ChHHHHHHHhcCCchHHHH
Q 045217 87 EKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYV 164 (224)
Q Consensus 87 ~k~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l~~~~--~~~~~l~~l~~~~~~~~~~ 164 (224)
+++++++||+||||++||++||++|||||++||++||+|||+||||||||||++||++. .+++.+..+
T Consensus 805 ~k~~~~~pp~pf~t~~Lq~~a~~~~g~s~~~tm~iaQ~LYe~g~iTYpRTds~~l~~~~~~~~~~~i~~~---------- 874 (1104)
T 4ddu_A 805 EAEEEKNPLPPYTTSSALSEISQKLRLGVQEVMDILQDLFEKGFITYHRTDSTRISLEGQNVARTYLRKI---------- 874 (1104)
T ss_dssp EEEEEECCCCCBCHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTSBSCSCCSCCCCCHHHHHHHHHHHHHH----------
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCceeecCCCccccCHHHHHHHHHHHHHh----------
Confidence 99999999999999999999999999999999999999999999999999999999763 122333222
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCcccCCCCC------------cCCCCHHHHHHHHHHHHHHHHhcCcCcccC
Q 045217 165 ERLLAEGYAKPRSGTDAGDHPPITPMRSAT------------EDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224 (224)
Q Consensus 165 ~~~~~~~~~~~~~~~k~~aH~AI~PT~~~~------------~~~L~~~e~~iY~lI~~r~la~f~~~a~y~ 224 (224)
.+..+.+++..++++||||||||...+ ...|+++|++||+|||+||||+||+||+|+
T Consensus 875 ---~~~~~~~~r~~~~~~aH~aI~Pt~~~~~~~~~~~~~~~~~~~l~~~e~~lY~lI~~rfla~~~~~a~~~ 943 (1104)
T 4ddu_A 875 ---GKEDIFMGRSWSTEGAHEAIRPVKPIDARELEEMIEEGLIADLTKKHLRVYELIFNRFLASQSAAVKVK 943 (1104)
T ss_dssp ---SCGGGBCCCCCCSSCSSCCBCBSSSCCHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHHHHHHBCCEEEE
T ss_pred ---hCccccCCCCCCCCCCCcCcCCCccCChHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHhCCceeEE
Confidence 111222344445689999999998632 236999999999999999999999999984
No 5
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.4e-50 Score=404.10 Aligned_cols=177 Identities=23% Similarity=0.368 Sum_probs=144.6
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHcCcCcceEEEEEEEEecCeEEEEEEeccccCCHHHHHHHHHHHccCCceEEEEEe
Q 045217 7 TLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDIS 86 (224)
Q Consensus 7 ~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~V~~v~ 86 (224)
++.+|+||||||||+|||+||+|| +|++||.+. +|..|.+.|+++ .+ .++|++|+
T Consensus 708 ~~~lS~GRVQtptL~~iv~Re~ei---~~~~~~~~~-----~~~~~~~~~~~~-------------~~----~~~V~~v~ 762 (1054)
T 1gku_B 708 NRNLSAGRAQTLVLGWIIDRFQES---RERRKIAIV-----RDFDLVLEHDEE-------------EF----DLTIKLVE 762 (1054)
T ss_dssp CSSCCCCTTHHHHHHHHHHHHTGG---GSEEEEEEE-----TTTTEEESCCCS-------------EE----EEEEEEEE
T ss_pred CceeeeccccchHHHHHHHHHHhh---CCcCcEEEE-----CCEEEEeccccc-------------ce----EEEEEEEE
Confidence 358999999999999999999999 788999874 455566544321 11 57899999
Q ss_pred eecccccCCCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCcccCCCcChHHHHHHHhcCCchHHHHHH
Q 045217 87 EKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVER 166 (224)
Q Consensus 87 ~k~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l~~~~~~~~~l~~l~~~~~~~~~~~~ 166 (224)
+++++++||+||||++||++||++|||||++||++||+|||+||||||||||++||++. .+.+..+
T Consensus 763 ~k~~~~~pp~pf~~~~Lq~~a~~~~g~s~~~tm~iaQ~LYe~g~iTYpRTds~~l~~~~--~~~~~~~------------ 828 (1054)
T 1gku_B 763 EREELRTPLPPYTTETMLSDANRILKFSVKQTMQIAQELFENGLITYHRTDSTRVSDVG--QRIAKEY------------ 828 (1054)
T ss_dssp EEEEEECCCCCBCHHHHHHHHHHTSCCCHHHHHHHHHHHHHTTSBBCSSCCCCCCCHHH--HHHHHHH------------
T ss_pred eeEEEecCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCceeecCCCccccCHHH--HHHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999864 1111111
Q ss_pred HhhcCCCCCCCCCCCCCCCCcccCCCCCc--------------CCCCHHHHHHHHHHHHHHHHhcCcCcccC
Q 045217 167 LLAEGYAKPRSGTDAGDHPPITPMRSATE--------------DMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224 (224)
Q Consensus 167 ~~~~~~~~~~~~~k~~aH~AI~PT~~~~~--------------~~L~~~e~~iY~lI~~r~la~f~~~a~y~ 224 (224)
++..+ +++..++.+||||||||...++ ..|+++|++||+||+|||||+||+||+|+
T Consensus 829 -~~~~~-~~r~~~~~~aH~aI~Pt~~~~~~~~~~~~~~~~~~~~~l~~~e~~lY~lI~~rfla~~~~~a~~~ 898 (1054)
T 1gku_B 829 -LGDDF-VGREWGESGAHECIRPTRPLTRDDVQRLIQEGVLVVEGLRWEHFALYDLIFRRFMASQCRPFKVV 898 (1054)
T ss_dssp -HTTSB-CCCCSCSCCSCCCBCBSSSCCHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHHHTTBCCEEEE
T ss_pred -hhhhh-ccccCCCCCCCCCCCCCCCCChHHHhhhhhcccccccCCCHHHHHHHHHHHHHHHHHhCcceEEE
Confidence 11222 3443334589999999986321 27999999999999999999999999984
No 6
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=94.29 E-value=0.1 Score=49.46 Aligned_cols=115 Identities=12% Similarity=0.211 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHHcCcCcceEEEEEEEEecCeEEEEEEe----cc--ccCC--HHH-HHHHHHHHccCCceEEEEEe
Q 045217 16 QTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE----RQ--KLFD--FDV-ATMFQKLVMQDRILEVIDIS 86 (224)
Q Consensus 16 QTPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~----~~--~~~~--~~~-a~~~~~~~~~~~~~~V~~v~ 86 (224)
+--+--||++|..+.. ..|..|-+..+.+..+|..|.++-. .| .++. .+. .+..+-.+..+..+.+.+++
T Consensus 387 e~klY~LI~rrflA~~-~~~a~~~~t~v~~~~~~~~F~a~g~~i~~~Gw~~vy~~~~~~~~~~~LP~l~~G~~~~~~~~~ 465 (592)
T 1mw9_X 387 AQKLYQLIWRQFVACQ-MTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELT 465 (592)
T ss_dssp HHHHHHHHHHHHHHHT-SCCEEEEEEEEEEEETTEEEEEEEEEEEECGGGGGSCCC----CCCCCCCCCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHh-CchhEEEEEEEEEEECCEEEEEEEEEEeeCChHHhcCccccccccccccccCCCCEeEeeEeE
Confidence 3446689999988754 4566777788888888888887632 12 2221 110 00011112233467788889
Q ss_pred eecccccCCCcccHHHHHHHHHHhCCCCHHHHH-HHHHHHhhcccee
Q 045217 87 EKQESKVRPCGLNTVNLLKVASSALGYGPQMAM-QLAERLYTQGFIS 132 (224)
Q Consensus 87 ~k~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl-~iaQ~LYE~glIT 132 (224)
.+++...||.+|+-++|.+.+- ..|+.-.-|. .|.+.|.+.|||.
T Consensus 466 ~~~~~T~PP~ryTEasLi~~Me-~~GIGtpATrA~iI~~L~~R~Yv~ 511 (592)
T 1mw9_X 466 PAQHFTKPPARFSEASLVKELE-KRGIGRPSTYASIISTIQDRGYVR 511 (592)
T ss_dssp EEEEECCCCCCCCHHHHHHHHH-HTTCCCTTTHHHHHHHHHHTTSEE
T ss_pred EeeeeccCCCCCCHHHHHHHHH-hcCCCchhhHHHHHHHHHhcCcee
Confidence 8999999999999999999985 4688655554 5899999999997
No 7
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=92.14 E-value=0.097 Score=49.99 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHcCcCcceEEEEEEEEe--cCeEEEEEEe----cc--ccCCHHHHHHHHHHHccCCceEEEEEeeec
Q 045217 18 PTLGFCVQRYLQITSFKPEKFWTLHPYLVQ--NGYELKLEWE----RQ--KLFDFDVATMFQKLVMQDRILEVIDISEKQ 89 (224)
Q Consensus 18 PtL~lIv~Re~eI~~F~p~~y~~i~~~~~~--~~~~~~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~V~~v~~k~ 89 (224)
-+--||++|..+.. ..|..|-+..+.+.. ++..|.++-. .| .+++.+. +..+-.+..+..+.+.+++.++
T Consensus 359 klY~LI~rrflA~~-~~~a~~~~t~v~~~~~~~~~~F~a~g~~i~~~G~~~vy~~~~-~~~LP~l~~G~~~~~~~~~~~~ 436 (633)
T 2gai_A 359 KLYELIWKRFLASQ-MKPSQYEETRFVLRTKDGKYRFKGTVLKKIFDGYEKVWKTER-NTGEFPFEEGESVKPVVVKIEE 436 (633)
T ss_dssp HHHHHHHHHHHHHT-BCCEEEEEEEEEEECTTSSCEEEEEEEEEEECGGGGTSCCCC-CBCCCCCCTTCEECCCEEEEEE
T ss_pred HHHHHHHHHHHHHh-CchheEEEEEEEEEEeCCCcEEEEEEEEEecCCHHHhhcccc-cccCCCcCCCCEEEEeEEEEee
Confidence 35579999988763 456677777888887 7778887632 12 2332110 0011112223456677888889
Q ss_pred ccccCCCcccHHHHHHHHHHhCCCCHHHHH-HHHHHHhhccceec
Q 045217 90 ESKVRPCGLNTVNLLKVASSALGYGPQMAM-QLAERLYTQGFISY 133 (224)
Q Consensus 90 ~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl-~iaQ~LYE~glITY 133 (224)
+...||.+|+-++|.+.+-+ .|+.-.-|. .|.+.|.+.|||.-
T Consensus 437 ~~T~PP~ryTEasLi~~Me~-~GIGtpaT~A~iI~~L~~R~Yv~~ 480 (633)
T 2gai_A 437 QETKPKPRYTEGSLVKEMER-LGIGRPSTYASTIKLLLNRGYIKK 480 (633)
T ss_dssp EECCCCCCCCHHHHHHHHHH-HTCCCTTTHHHHHHHHHHTTSEEE
T ss_pred eecCCCCCCCHHHHHHHhhc-cCCCCcccHHHHHHHHhhcCcEEE
Confidence 99999999999999999854 588644444 58999999999873
No 8
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=91.65 E-value=0.089 Score=50.47 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHcCcCcceEEEEEEEEecCeEEEEEEe----cc--ccCCH---HH--HHHHHHHHccCCceEEEE
Q 045217 16 QTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE----RQ--KLFDF---DV--ATMFQKLVMQDRILEVID 84 (224)
Q Consensus 16 QTPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~----~~--~~~~~---~~--a~~~~~~~~~~~~~~V~~ 84 (224)
+--+--||++|..+.. ..|-.|-+..+.+..+|..|.++-. .| .++.. ++ .+..+-.+..+..+.+.+
T Consensus 399 e~klY~LI~rRflA~~-~~~a~~~~t~v~~~~~~~~F~a~G~~i~~~Gw~~vy~~~~~~~~~~~~~LP~l~~Ge~~~~~~ 477 (659)
T 1i7d_A 399 EAKVYNLIARQYLMQF-CPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEK 477 (659)
T ss_dssp HHHHHHHHHHHHHHTT-SCCEEEEEEEEEECSTTCCEEECEEEEEECGGGGGSCTTGGGTTCEECCCCCCCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHh-CchheEEEEEEEEEECCEEEEEEEEEEecCChhheecccccccccccccCCccCCCCEEEEeE
Confidence 4446678999988753 3566677777888777777876532 11 22221 10 000111122334577889
Q ss_pred EeeecccccCCCcccHHHHHHHHHH----------------hCCCCHHHHH-HHHHHHhhcccee
Q 045217 85 ISEKQESKVRPCGLNTVNLLKVASS----------------ALGYGPQMAM-QLAERLYTQGFIS 132 (224)
Q Consensus 85 v~~k~~~~~pP~p~~l~~Lq~~a~~----------------~~g~sa~~tl-~iaQ~LYE~glIT 132 (224)
++.+++...||.+|+-++|.+.|-+ ..|+.-.-|. .|.+.|++.|||.
T Consensus 478 ~~~~e~~T~PP~ryTEasLi~~Me~~~k~v~d~e~~~~lk~~~GIGtpATrA~iIe~L~~R~Yv~ 542 (659)
T 1i7d_A 478 GEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLT 542 (659)
T ss_dssp EEEEEEECCCCCCEEHHHHHHHHHTGGGGCCCHHHHHHHHHTTSSSCTTTHHHHHHHHHHTTSEE
T ss_pred eEEeeeecCCCCCCCHHHHHHHHHHhccccCCHHHHHHHhhccCCCccccHHHHHHHHHhCCcEe
Confidence 9999999999999999999999875 3587544443 5999999999997
No 9
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=91.03 E-value=0.23 Score=32.44 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=25.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
.++++||.+.++++++..+|=++|+|.
T Consensus 30 ~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 30 HFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 567899999999999999999999996
No 10
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=83.21 E-value=1.5 Score=32.62 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceec--cCCCCcccCCCcChHHHHHHHh
Q 045217 99 NTVNLLKVASSALGYGPQMAMQLAERLYTQGFISY--PRTESTAYPSSFDFRGTLSALA 155 (224)
Q Consensus 99 ~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITY--PRTds~~l~~~~~~~~~l~~l~ 155 (224)
+.++| ++++|+|...+..+.++|-++|||+- .+.|...+++.+|+..++..|.
T Consensus 53 s~~~L----A~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~kL~ 107 (128)
T 2vn2_A 53 TPAEL----AERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEKLV 107 (128)
T ss_dssp CHHHH----HHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHHHH
T ss_pred CHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHHHH
Confidence 55544 56789999999999999999999975 2233334444456666666654
No 11
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=78.49 E-value=1.6 Score=33.20 Aligned_cols=50 Identities=6% Similarity=0.083 Sum_probs=37.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc-CCCCc-ccCCCcChHHHHHHHh
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP-RTEST-AYPSSFDFRGTLSALA 155 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP-RTds~-~l~~~~~~~~~l~~l~ 155 (224)
..++++|+|+.++..+.++|-++|||+.- |+|.. ...+.+++..+++.|.
T Consensus 56 ~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ekL~ 107 (135)
T 2v79_A 56 QLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKLY 107 (135)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHHHHH
Confidence 44688999999999999999999999873 55553 2233346666666664
No 12
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=67.86 E-value=9.5 Score=25.38 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=34.0
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|.+..+|....+..-++++.-+..++..|-++|+|+.-+
T Consensus 23 ~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 23 SINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp SEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 468888888887766899999999999999999998755
No 13
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=65.69 E-value=18 Score=36.45 Aligned_cols=113 Identities=10% Similarity=0.085 Sum_probs=72.9
Q ss_pred cCcchhHHHHHHHHHHHHHHcCcCcceEEEEEEEEecCeEEEEEEe-----cc--ccCCHHHHHHHHHHHccCCceEEEE
Q 045217 12 YGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWE-----RQ--KLFDFDVATMFQKLVMQDRILEVID 84 (224)
Q Consensus 12 ~GRVQTPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~-----~~--~~~~~~~a~~~~~~~~~~~~~~V~~ 84 (224)
...-|--+-.||++|..+.. ..|..|-+..+.+..+|..|.++.. .| .++.. ..+-.+..+ .+.+.+
T Consensus 917 l~~~e~~lY~lI~~rfla~~-~~~a~~~~t~v~~~~~~~~f~~~g~~~i~~~G~~~v~~~----~~lp~l~~g-~~~~~~ 990 (1104)
T 4ddu_A 917 LTKKHLRVYELIFNRFLASQ-SAAVKVKKQIVTVDVDGKRMGIEQIVEILRDGWNLFVPL----TVSPRFEHR-TYKIKE 990 (1104)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-BCCEEEEEEEEEEESSSCEEEEEEEEEEEECSGGGTSCC----CCCCCCCSS-EEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHh-CCceeEEEEEEEEEECCEEEEEEEEEEEEECCHHHhccc----ccCCCCCCC-ceEEEE
Confidence 34455567789999998865 4566787888888888877876542 11 12220 001112222 334444
Q ss_pred EeeecccccCCCcccHHHHHHHHHHhCCCCHHHH-HHHHHHHhhccceec
Q 045217 85 ISEKQESKVRPCGLNTVNLLKVASSALGYGPQMA-MQLAERLYTQGFISY 133 (224)
Q Consensus 85 v~~k~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~t-l~iaQ~LYE~glITY 133 (224)
++ ..+..||.+|+-++|.+.+-+ .|+.-.-| -.|.+.|.+.|||.-
T Consensus 991 ~~--~~~~~~p~~~tea~Li~~me~-~GIGtpaT~a~iI~~l~~r~Yv~~ 1037 (1104)
T 4ddu_A 991 KK--FYKKHTVPLFTQASIVEEMKK-RGIGRPSTYAKIVEVLFRRGYVYE 1037 (1104)
T ss_dssp EE--EECCCSSCCBCHHHHHHHHHH-HTCSCTTTHHHHHHHHHHTTSEEE
T ss_pred ee--eeecCCCCCCCHHHHHHHHHh-cCCCCccchHHHHHHHHhCCeEEE
Confidence 43 356677889999999999854 58864444 458999999999973
No 14
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=62.76 E-value=12 Score=25.60 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
+.+.++|.+..++.+|++..-+-.+++.|-++|||.-
T Consensus 22 ~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r 58 (99)
T 1tbx_A 22 GIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKE 58 (99)
T ss_dssp TCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEE
Confidence 3566777666578999999999999999999999975
No 15
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=58.41 E-value=9.6 Score=26.83 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
.+..+| ++.+|+|..-+-++.+.|.+.|+|+.-
T Consensus 34 ~s~~eL----a~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 34 MTDEEI----ANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp BCHHHH----HHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 455554 678999999999999999999999874
No 16
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=58.08 E-value=12 Score=25.76 Aligned_cols=31 Identities=3% Similarity=0.089 Sum_probs=26.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
|.+.++.+|++..-+-.++..|-++|||..|
T Consensus 33 ~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~ 63 (95)
T 2qvo_A 33 IQYIASKVNSPHSYVWLIIKKFEEAKMVECE 63 (95)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCcCccCC
Confidence 3455778999999999999999999999443
No 17
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=55.85 E-value=10 Score=24.73 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
|.+.++| ++.+|+|...+..+++.|=+.|+|.-+++
T Consensus 25 ~~s~~eL----A~~lglsr~tv~~~l~~L~~~G~I~~~~~ 60 (67)
T 2heo_A 25 PVAIFQL----VKKCQVPKKTLNQVLYRLKKEDRVSSPSP 60 (67)
T ss_dssp CEEHHHH----HHHHCSCHHHHHHHHHHHHHTTSEEEEET
T ss_pred CcCHHHH----HHHHCcCHHHHHHHHHHHHHCCcEecCCC
Confidence 4566655 67789999999999999999999976554
No 18
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=55.66 E-value=13 Score=26.62 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=25.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|+|...+-.+++.|-++|||+--
T Consensus 55 ela~~l~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 55 QLANQACILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 44677899999999999999999999753
No 19
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=55.11 E-value=12 Score=25.02 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
.+.++| ++.+|+|...+-...+.|-+.|+|..
T Consensus 15 ~s~~eL----a~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 15 GKTAEI----AEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCHHHH----HHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 455554 56779999999999999999999975
No 20
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=54.15 E-value=15 Score=25.69 Aligned_cols=29 Identities=7% Similarity=-0.014 Sum_probs=26.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
|++..++++++...+-.++++|=++|||.
T Consensus 39 qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 39 SRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 67888999999999999999999999997
No 21
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=53.95 E-value=13 Score=25.35 Aligned_cols=34 Identities=9% Similarity=0.212 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++| ++.+|+|..-+-.+++.|-+.|+|..-+
T Consensus 37 ~t~~el----a~~l~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 37 ITSEEL----ADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp EEHHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHH----HHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 555555 4677999999999999999999997643
No 22
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=53.73 E-value=15 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=25.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
+.++.+|++...+-.++++|-++|||.-
T Consensus 57 ela~~l~~~~~tvs~~l~~L~~~glv~r 84 (140)
T 2nnn_A 57 QLGRLTAMDAATIKGVVERLDKRGLIQR 84 (140)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4467789999999999999999999975
No 23
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=53.61 E-value=33 Score=26.67 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHhhcccee
Q 045217 101 VNLLKVASSALG--YGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 101 ~~Lq~~a~~~~g--~sa~~tl~iaQ~LYE~glIT 132 (224)
.+++.......| +|-+.+..+.|.|+|.|+||
T Consensus 78 ~~~~~~l~~~ig~~is~~~a~~ii~~L~e~~~it 111 (155)
T 3h0d_A 78 AQLIDQLLELIDHRISQSSAEDVIKRLMEEKVIS 111 (155)
T ss_dssp HHHHHHHHTTCCSCCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHHcCCCC
Confidence 567777777777 89999999999999999997
No 24
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=52.71 E-value=12 Score=30.10 Aligned_cols=40 Identities=8% Similarity=0.160 Sum_probs=32.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCcccCC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPS 143 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l~~ 143 (224)
+.+.++.+|+|+.-+-.++++|-++|||++-+.-.-+|++
T Consensus 23 ~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~i~LT~ 62 (214)
T 3hrs_A 23 NKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTD 62 (214)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECH
T ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCEEEecCCCeEECH
Confidence 3455788899999999999999999999997753334554
No 25
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=52.71 E-value=13 Score=26.54 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=25.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
.+.++.+|+|...+..+++.|-++|||+-
T Consensus 47 ~ela~~l~~s~~tvs~~l~~L~~~glv~~ 75 (138)
T 3bpv_A 47 DELATFFHVDKGTIARTLRRLEESGFIER 75 (138)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34466779999999999999999999975
No 26
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=52.28 E-value=20 Score=25.43 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|-+..+|....+...|+++.-+..++.+|-++|||+--|
T Consensus 24 ~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 24 SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 357788877777666799999999999999999998755
No 27
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=52.27 E-value=13 Score=26.98 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
.+..+| ++.+|+|...+..+++.|.++|+|.-
T Consensus 43 ~t~~eL----a~~l~~s~sTV~r~L~~L~~~GlV~r 74 (123)
T 3r0a_A 43 IDTDAL----SKSLKLDVSTVQRSVKKLHEKEILQR 74 (123)
T ss_dssp EEHHHH----HHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 566666 56679999999999999999999974
No 28
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=51.59 E-value=21 Score=35.80 Aligned_cols=112 Identities=9% Similarity=0.130 Sum_probs=67.5
Q ss_pred CcchhHHHHHHHHHHHHHHcCcCcceEEEEEEEEecCeEEEEEEeccccCCHHHHHHH-----HHHHccCCceEEEEEee
Q 045217 13 GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMF-----QKLVMQDRILEVIDISE 87 (224)
Q Consensus 13 GRVQTPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~V~~v~~ 87 (224)
+.-+--+--||++|..+.. ..|..|-+..+.+..+|..|.++-. ..+.+.--- .+ ...+. .+. ..+.
T Consensus 873 ~~~e~~lY~lI~~rfla~~-~~~a~~~~t~v~~~~~~~~f~~~~~-~~~~~~G~~-~v~~~~~~~~l~---~g~-~~~~- 944 (1054)
T 1gku_B 873 RWEHFALYDLIFRRFMASQ-CRPFKVVVKKYSIEFDGKTAEEERI-VRAEGRAYE-LYRAVWVKNELP---TGT-FRVK- 944 (1054)
T ss_dssp CHHHHHHHHHHHHHHHHTT-BCCEEEEEEEEEEEETTEEEEECCE-EEEESHHHH-HSCCSCCCCCCC---CEE-EEEE-
T ss_pred CHHHHHHHHHHHHHHHHHh-CcceEEEEEEEEEEeCCEEEEEEee-EEEEeCCce-EEeccccCCCCC---CCc-eEEe-
Confidence 3445556789999988753 3566677777888888888876510 011111000 00 00121 232 2233
Q ss_pred ecccccCC-CcccHHHHHHHHHHhCCCCHHHHH-HHHHHHhhccceec
Q 045217 88 KQESKVRP-CGLNTVNLLKVASSALGYGPQMAM-QLAERLYTQGFISY 133 (224)
Q Consensus 88 k~~~~~pP-~p~~l~~Lq~~a~~~~g~sa~~tl-~iaQ~LYE~glITY 133 (224)
+++...|| .+|+-++|.+.|-+ .|+.-.-|. .|.+.|.+.|||.-
T Consensus 945 ~~~~t~pp~~~~tea~Li~~Me~-~GIGtpaT~a~iI~~l~~r~Yv~~ 991 (1054)
T 1gku_B 945 AEVKSVPKVLPFTQSEIIQMMKE-RGIGRPSTYATIVDRLFMRNYVVE 991 (1054)
T ss_dssp BCCEEEESSCCBCHHHHHHHHHH-HTCCCTTTHHHHHHHHHHTTSEEE
T ss_pred eeeeeCCCCCCCCHHHHHHhhhc-CCCCCcccHHHHHHHHHhCCchhh
Confidence 34444455 79999999999855 588655554 58999999999973
No 29
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=51.57 E-value=15 Score=25.48 Aligned_cols=29 Identities=7% Similarity=-0.011 Sum_probs=25.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|+|...+-....+|-+.|+|.+-
T Consensus 35 eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 35 QLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 44789999999999999999999999874
No 30
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.06 E-value=17 Score=26.28 Aligned_cols=30 Identities=17% Similarity=0.061 Sum_probs=25.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
.+.++.+|+|...+-.+++.|-++|||+--
T Consensus 54 ~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 54 SELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 344678899999999999999999999764
No 31
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=50.70 E-value=16 Score=26.35 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=26.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
|.+.++.+|+++..+-.++++|-++|||..-
T Consensus 56 ~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 56 LKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3445678999999999999999999999873
No 32
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=50.53 E-value=20 Score=24.18 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=24.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
+.++.+|+|...+-.+.+.|-+.|+|.-
T Consensus 35 ela~~l~is~~tvs~~l~~L~~~gli~~ 62 (100)
T 1ub9_A 35 QIQKVLDLTPGNLDSHIRVLERNGLVKT 62 (100)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3456789999999999999999999973
No 33
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=50.38 E-value=14 Score=27.85 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=25.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|++...+-.+++.|-++|||+.-
T Consensus 64 eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 64 TLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 44667899999999999999999999863
No 34
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=50.32 E-value=15 Score=26.26 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=25.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|+|...+..++++|-++|||+--
T Consensus 53 ~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 53 ELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 33577899999999999999999999753
No 35
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=49.99 E-value=16 Score=24.74 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=24.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|+|...+-.+++.|-+.|+|.--
T Consensus 39 ela~~l~is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 39 EIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 33566799999999999999999999753
No 36
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=49.99 E-value=17 Score=24.53 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.+.++| ++.+|+|...+-.+.+.|-+.|+|..-+
T Consensus 38 ~~s~~el----a~~l~is~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 38 GTSAGEL----TRITGLSASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp SEEHHHH----HHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3455554 5667999999999999999999997654
No 37
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=49.86 E-value=15 Score=26.41 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|+|...+..+++.|-++|||+--
T Consensus 52 ~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 52 ELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 34567799999999999999999999863
No 38
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=49.71 E-value=16 Score=26.56 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=25.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+++..+-.++.+|-++|||+--+
T Consensus 55 eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 55 KLGERVFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHCCChhhHHHHHHHHHHCCCeEecC
Confidence 345667999999999999999999998644
No 39
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=49.67 E-value=16 Score=26.36 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=25.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+|...+-.+++.|-++|||+--+
T Consensus 57 ~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 57 ELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 335667999999999999999999997643
No 40
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=49.56 E-value=16 Score=26.21 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=28.2
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.+.++| ++.+|+++..+-.+++.|-++|||.--+
T Consensus 50 ~~~~~el----a~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 50 EVLQRDL----ESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp CCBHHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHH----HHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 4555555 5667999999999999999999997643
No 41
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=49.39 E-value=14 Score=28.37 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=28.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|++.+..+|+|+..+..+..+|-+.|+|.+-|
T Consensus 166 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 197 (216)
T 4ev0_A 166 HHELAALAGTSRETVSRVLHALAEEGVVRLGP 197 (216)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 66667889999999999999999999999866
No 42
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=49.18 E-value=16 Score=26.13 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=24.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|+|...+-.+++.|-++|+|.--
T Consensus 50 ela~~l~is~~~vs~~l~~L~~~gli~~~ 78 (142)
T 3bdd_A 50 ALQERLQIDRAAVTRHLKLLEESGYIIRK 78 (142)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 44567899999999999999999999753
No 43
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=49.06 E-value=19 Score=26.55 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=25.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|++...+-.+++.|-++|||+--
T Consensus 63 ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 63 EIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 44677899999999999999999999863
No 44
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=49.01 E-value=16 Score=26.44 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=26.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++.+|+++..+-.++.+|-++|||+--+
T Consensus 54 ~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 54 VYLANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 3446678999999999999999999998644
No 45
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=48.99 E-value=21 Score=25.69 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|.+.++| ++.+|+|...+..+++.|-++|||+.-+
T Consensus 41 ~~t~~el----a~~l~~~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 41 PLTISDI----MEELKISKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp CEEHHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3555555 5677999999999999999999998743
No 46
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=48.68 E-value=15 Score=28.31 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
|++.+..+|.|+..+-.+..+|-+.|+|++-|-
T Consensus 172 ~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~ 204 (220)
T 3dv8_A 172 HETIANHLGSHREVITRMLRYFQVEGLVKLSRG 204 (220)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCC
Confidence 556678899999999999999999999998654
No 47
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=47.70 E-value=21 Score=25.69 Aligned_cols=29 Identities=7% Similarity=0.004 Sum_probs=25.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|+|...+-.+++.|-++|||+--
T Consensus 55 ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 55 YLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 44667899999999999999999999753
No 48
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=47.66 E-value=21 Score=26.21 Aligned_cols=31 Identities=3% Similarity=0.068 Sum_probs=26.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++.+|++...+-.++..|-++|||+--+
T Consensus 61 ~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 61 TRLAKLSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 3446778999999999999999999998543
No 49
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=47.63 E-value=18 Score=26.12 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=25.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
.+.++.+|+|...+..+++.|-++|||.--
T Consensus 47 ~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 47 EKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 345667899999999999999999999753
No 50
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=47.37 E-value=18 Score=26.31 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=25.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|++...+..+++.|-++|||..-
T Consensus 61 ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 61 ELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 44567899999999999999999999763
No 51
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=47.15 E-value=18 Score=26.13 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=25.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+|..-+-.++..|-++|||+--+
T Consensus 56 eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 56 ELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 446677999999999999999999998644
No 52
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=47.07 E-value=28 Score=24.49 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccCCCC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTES 138 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds 138 (224)
|.+.++|....+...++|...+..++..|-++|||..-+.|-
T Consensus 24 ~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~r 65 (123)
T 1okr_A 24 YASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNK 65 (123)
T ss_dssp SEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred CcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCC
Confidence 467788887777667799999999999999999998765443
No 53
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=47.06 E-value=17 Score=27.79 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=28.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|++.+..+|.|+..+-.+..+|-+.|+|++.|
T Consensus 167 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 167 RQEIGRIVGCSREMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 56667889999999999999999999999865
No 54
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=47.03 E-value=18 Score=27.58 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=29.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
|++.+..+|.|+..+-.+..+|-+.|+|++.|-
T Consensus 142 ~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~ 174 (195)
T 3b02_A 142 HEEIADATASIRESVSKVLADLRREGLIATAYR 174 (195)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 566678999999999999999999999998763
No 55
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=46.64 E-value=13 Score=25.38 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.6
Q ss_pred HHHHHhCCCCHHH-HHHHHHHHhhcccee
Q 045217 105 KVASSALGYGPQM-AMQLAERLYTQGFIS 132 (224)
Q Consensus 105 ~~a~~~~g~sa~~-tl~iaQ~LYE~glIT 132 (224)
.+.++.+|+++.- +-.+++.|-++|||.
T Consensus 34 ~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 34 AEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 3446778999999 899999999999999
No 56
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=46.63 E-value=18 Score=26.44 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=25.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|+|...+..+++.|-++|||+--
T Consensus 56 ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 56 EIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 44667899999999999999999999753
No 57
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=46.16 E-value=19 Score=26.00 Aligned_cols=30 Identities=7% Similarity=-0.048 Sum_probs=25.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+++..+-.++.+|-++|||+--+
T Consensus 56 eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 56 EIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 335667999999999999999999998543
No 58
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=46.07 E-value=19 Score=26.68 Aligned_cols=29 Identities=7% Similarity=-0.005 Sum_probs=24.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|++...+-.+++.|-++|||+--
T Consensus 71 ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 71 TLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 34567799999999999999999999753
No 59
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=45.79 E-value=20 Score=26.02 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=26.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+|..-+-.+++.|-++|||..-+
T Consensus 36 ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 36 RIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 446778999999999999999999998755
No 60
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=45.75 E-value=20 Score=25.72 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=28.3
Q ss_pred CcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 96 CGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 96 ~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
-+.+.++| ++.+|+|+..+-.++.+|-++|||+--
T Consensus 46 ~~~t~~el----a~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 46 DGLTQNDI----AKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp TCEEHHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHH----HHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 34565555 566799999999999999999999853
No 61
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=45.67 E-value=18 Score=29.33 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=30.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCcccCCC
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSS 144 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l~~~ 144 (224)
++.++.+|+|+..+-.....|=++|||+|-+ ---.|++.
T Consensus 34 ~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~-~Gv~LTe~ 72 (200)
T 2p8t_A 34 KQISERLELGEGSVRTLLRKLSHLDIIRSKQ-RGHFLTLK 72 (200)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---CEEECHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC-CCeEECHH
Confidence 3446788999999999999999999999988 33345543
No 62
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=45.45 E-value=20 Score=26.11 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=24.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|++...+-.+++.|-++|||.--
T Consensus 59 ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 59 QLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 34567799999999999999999999753
No 63
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=45.34 E-value=23 Score=26.26 Aligned_cols=31 Identities=6% Similarity=0.049 Sum_probs=26.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
+.++.+|+++..+-.++.+|-++|||+--+.
T Consensus 72 eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~ 102 (161)
T 3e6m_A 72 QLATLGVMEQSTTSRTVDQLVDEGLAARSIS 102 (161)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 3467889999999999999999999987553
No 64
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=44.70 E-value=20 Score=26.14 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=24.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
+.++.+|+++..+-.++..|-++|||+.
T Consensus 60 eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 60 DLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4466779999999999999999999986
No 65
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=44.66 E-value=14 Score=26.26 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
|.+..+|....+..-++++.-+..++.+|-++|||+--
T Consensus 49 ~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 49 EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 35667776666554568999999999999999999854
No 66
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=44.62 E-value=19 Score=27.45 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=28.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|++.+..+|.|...+-.+..+|-+.|+|++-|
T Consensus 170 ~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 170 RQEIGQIVGCSRETVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCC
Confidence 56667889999999999999999999999865
No 67
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=44.41 E-value=19 Score=27.95 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
|++.+..+|.|...+-.+..+|-+.|+|++-|-
T Consensus 181 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~ 213 (227)
T 3dkw_A 181 KQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGR 213 (227)
T ss_dssp THHHHHHTTSCHHHHHHHHHHHHHHTSEEESSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCC
Confidence 556678899999999999999999999998664
No 68
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=44.34 E-value=21 Score=27.86 Aligned_cols=33 Identities=6% Similarity=0.061 Sum_probs=28.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
|++.+..+|+|+..+-.+..+|-+.|+|++-|-
T Consensus 178 ~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~ 210 (231)
T 3e97_A 178 TQDIMARTSSSRETVSRVLKRLEAHNILEVSPR 210 (231)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCC
Confidence 455677889999999999999999999998663
No 69
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=44.06 E-value=21 Score=26.00 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=26.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
+.++.+|+|+.-+-.+++.|-++|||..-|.
T Consensus 27 ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 27 DIAEALAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 4467889999999999999999999987653
No 70
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=44.06 E-value=21 Score=28.76 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=30.8
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCcccCC
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPS 143 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l~~ 143 (224)
.+.++.+|+|+.-+-.++++|-++|||++-+.-.-+|++
T Consensus 28 ~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~v~LT~ 66 (226)
T 2qq9_A 28 ARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTP 66 (226)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCCeEECH
Confidence 456778999999999999999999999996542233444
No 71
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=43.88 E-value=21 Score=26.30 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|++...+-.+++.|-++|||.--
T Consensus 68 ela~~l~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 68 EVSDRTAMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEeee
Confidence 44567899999999999999999999853
No 72
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=43.78 E-value=20 Score=27.82 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=28.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|++.+..+|.|...+-.+..+|-+.|+|++-|
T Consensus 190 ~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 190 RQELARLVGCSREMAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHCCCEEECC
Confidence 55667889999999999999999999999865
No 73
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=43.51 E-value=22 Score=26.30 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=24.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
+.++.+|+|+..+....+.|-+.|+|.
T Consensus 24 ela~~lg~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 24 ELGRKIKLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 456788999999999999999999996
No 74
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=43.27 E-value=22 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=24.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|+|...+-.++++|-++|||.--
T Consensus 66 ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 66 EIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 33567799999999999999999999853
No 75
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=43.12 E-value=21 Score=27.28 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=28.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|++.+..+|.|...+-.+..+|-+.|+|++-|
T Consensus 149 ~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 180 (202)
T 2zcw_A 149 HDELAAAVGSVRETVTKVIGELAREGYIRSGY 180 (202)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 55667889999999999999999999999765
No 76
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.01 E-value=18 Score=27.50 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=28.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhcccee-c-cCCCCccc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFIS-Y-PRTESTAY 141 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glIT-Y-PRTds~~l 141 (224)
+.++.+|+|+..+....++|-+.|+|. | ..-|-..+
T Consensus 22 ~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~l 59 (162)
T 3i4p_A 22 DLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKV 59 (162)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTT
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHh
Confidence 446788999999999999999999998 4 34444433
No 77
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=42.52 E-value=22 Score=26.34 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=24.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
+.++.+|+|+..+....+.|-+.|+|.
T Consensus 26 ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 26 ELATRAGLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 446778999999999999999999995
No 78
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=42.37 E-value=24 Score=25.59 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+++..+-.++.+|-++|||+--+
T Consensus 59 ela~~l~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 59 KISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEeec
Confidence 346678999999999999999999998643
No 79
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=42.21 E-value=26 Score=25.28 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=26.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
.+.++.+|++...+-.++..|-++|||..-
T Consensus 58 ~~la~~l~~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 58 KKMGEQLYLDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred HHHHHHHCCCcCcHHHHHHHHHHCCCEEec
Confidence 345678899999999999999999999864
No 80
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=42.17 E-value=20 Score=26.57 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=24.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
+.++.+|+|+..+....+.|-+.|+|.
T Consensus 22 ela~~lg~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 22 EIAREIRIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 446778999999999999999999996
No 81
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=42.09 E-value=15 Score=26.20 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=25.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|+|...+-.+++.|-++|||+--
T Consensus 52 ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 52 KLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 44677899999999999999999999763
No 82
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=41.82 E-value=20 Score=24.54 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCHH-HHHHHHHHHhhcccee
Q 045217 104 LKVASSALGYGPQ-MAMQLAERLYTQGFIS 132 (224)
Q Consensus 104 q~~a~~~~g~sa~-~tl~iaQ~LYE~glIT 132 (224)
..+.++.+|+|+. .+-.+.++|-+.|+|.
T Consensus 28 a~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 28 ALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 4466788999998 8999999999999998
No 83
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=41.71 E-value=24 Score=26.07 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=25.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+++..+-.++.+|-++|||+--+
T Consensus 69 eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 69 SLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 446778999999999999999999997543
No 84
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=41.40 E-value=27 Score=27.24 Aligned_cols=33 Identities=3% Similarity=0.017 Sum_probs=29.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
|++.+..+|+|+..+-.+..+|-+.|+|++-|-
T Consensus 183 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~ 215 (232)
T 2gau_A 183 REELATLSNMTVSNAIRTLSTFVSERMLALDGK 215 (232)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCC
Confidence 566678899999999999999999999998763
No 85
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=41.08 E-value=23 Score=26.40 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=24.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
+.++.+|+|+..+....+.|-+.|+|.-
T Consensus 27 ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 27 ELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 4467889999999999999999999973
No 86
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=40.90 E-value=18 Score=26.06 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=25.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
.+.++.+|+|...+..++..|-++|||+--
T Consensus 55 ~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 84 (142)
T 2bv6_A 55 KKVVTELALDTGTVSPLLKRMEQVDLIKRE 84 (142)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 344677899999999999999999999753
No 87
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=40.37 E-value=25 Score=28.30 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=28.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|++.+..+|+|...+..+..+|-+.|+|++-|
T Consensus 220 ~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~ 251 (260)
T 3kcc_A 220 RQEIGQIVGCSRETVGRILKMLEDQNLISAHG 251 (260)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcC
Confidence 55667789999999999999999999999865
No 88
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=39.98 E-value=34 Score=23.91 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHhC-CCCHHHHHHHHHHHhhccceec
Q 045217 98 LNTVNLLKVASSAL-GYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~-g~sa~~tl~iaQ~LYE~glITY 133 (224)
.+.++| .+.+ |+|+..+-...+.|-+.|||+-
T Consensus 28 ~~~~eL----a~~l~~is~~tls~~L~~Le~~GlI~r 60 (107)
T 2hzt_A 28 KRTSEL----KRLMPNITQKMLTQQLRELEADGVINR 60 (107)
T ss_dssp BCHHHH----HHHCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHH----HHHhcCCCHHHHHHHHHHHHHCCCEEE
Confidence 344555 4567 9999999999999999999963
No 89
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=39.85 E-value=29 Score=25.68 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=24.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
+.++.+|+|+..+....+.|-+.|+|.
T Consensus 28 ela~~lg~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 28 ELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 446789999999999999999999997
No 90
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=39.72 E-value=20 Score=26.17 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=24.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+++..+-.++.+|-++|||+--+
T Consensus 59 eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 59 GVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred HHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 335677999999999999999999998643
No 91
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=39.60 E-value=26 Score=26.05 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=27.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|.+.++.+|+++.-+-.++.+|-++|||+--+
T Consensus 49 ~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 49 QIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 45667889999999999999999999997544
No 92
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=39.58 E-value=25 Score=27.30 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=29.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccCCC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPRTE 137 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTd 137 (224)
|++.+..+|+|...+-.+..+|-+.|+|++.|--
T Consensus 166 ~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 166 VEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 5666788999999999999999999999986543
No 93
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=39.54 E-value=27 Score=26.98 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceecc-CC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYP-RT 136 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYP-RT 136 (224)
|++.+..+|.|+..+-.+..+|-+.|+|++. |-
T Consensus 170 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~ 203 (220)
T 2fmy_A 170 TEEIALMLGTTRQTVSVLLNDFKKMGILERVNQR 203 (220)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSS
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCC
Confidence 5566788999999999999999999999985 54
No 94
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=39.31 E-value=26 Score=25.62 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=25.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
.+.++.+|+++..+-.++.+|-++|||+--
T Consensus 59 ~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 59 NSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 344666799999999999999999999853
No 95
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=39.27 E-value=25 Score=27.86 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=28.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
|++.+..+|.|...+-.+..+|-+.|+|.+-|-
T Consensus 196 ~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~ 228 (243)
T 3la7_A 196 HQAIAEAIGSTRVTVTRLLGDLREKKMISIHKK 228 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCC
Confidence 344467889999999999999999999998764
No 96
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=39.22 E-value=32 Score=26.93 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=27.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCcc
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTA 140 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~ 140 (224)
+++.++.+|+|..-+....+.|=++|+|...+.+++.
T Consensus 27 ~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~~~~r~ 63 (196)
T 3k2z_A 27 VREIARRFRITPRGALLHLIALEKKGYIERKNGKPRA 63 (196)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEECC---TTC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHCCCEEecCCCcce
Confidence 4566788999998888899999999999876555443
No 97
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=38.92 E-value=27 Score=26.28 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=24.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
+.++.+|+|+..+....+.|-+.|+|.
T Consensus 29 ela~~lg~s~~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 29 ELSERVALSPSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 446778999999999999999999997
No 98
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=38.70 E-value=26 Score=27.17 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=28.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|++.+..+|.|+..+-.+..+|-+.|+|++-|
T Consensus 180 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 211 (227)
T 3d0s_A 180 QEEIAQLVGASRETVNKALADFAHRGWIRLEG 211 (227)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC
Confidence 55667789999999999999999999999865
No 99
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=38.66 E-value=28 Score=24.42 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|.+.++| ++.+|+|...+-...+.|-+.|+|..-|
T Consensus 38 ~~s~~eL----a~~lgis~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 38 ERAVEAI----ATATGMNLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp CEEHHHH----HHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCHHHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 3566666 4566999999999999999999997544
No 100
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=38.65 E-value=35 Score=26.04 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=36.4
Q ss_pred cccccCCCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccce
Q 045217 89 QESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131 (224)
Q Consensus 89 ~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glI 131 (224)
.....-|++|.+-.=.++|.+.||-++-=||.++++|=..-|+
T Consensus 7 ~~~~~~pl~~K~IkeLk~Av~~YGp~APyT~a~le~La~~~Lt 49 (140)
T 2v4x_A 7 NQRYYESLPFKQLKELKIACSQYGPTAPFTIAMIENLGTQALP 49 (140)
T ss_dssp SCEEECCCCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHTSCCC
T ss_pred CCccccCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHhCCCC
Confidence 3466789999988888899999999999999999999875443
No 101
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Probab=38.21 E-value=21 Score=28.46 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=37.1
Q ss_pred cccccCCCcccHHHHHHHHHHhCC------CCHHHHHHHHHHHhhcccee
Q 045217 89 QESKVRPCGLNTVNLLKVASSALG------YGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 89 ~~~~~pP~p~~l~~Lq~~a~~~~g------~sa~~tl~iaQ~LYE~glIT 132 (224)
+.+..=--|++|..|...||.|-. +|-.++..+...|-.+||++
T Consensus 37 ~~TTPd~YPLsLNaL~~aCNQKsnRePVm~l~e~eV~~aLd~L~~~~Lv~ 86 (183)
T 2nr3_A 37 QATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTR 86 (183)
T ss_dssp HHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEE
T ss_pred cccCCCcCcchHHHHHHHhccccccCccccCCHHHHHHHHHHHHHCCCee
Confidence 344455578999999999999854 88999999999999999984
No 102
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=38.12 E-value=31 Score=23.44 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
|.+.++|. +.+|+|...+-...+.|-+.|+|..-|.
T Consensus 36 ~~~~~ela----~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 36 ELSVGELC----AKLQLSQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp CEEHHHHH----HHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCHHHHH----HHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 46666664 4559999999999999999999986543
No 103
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=38.12 E-value=19 Score=26.08 Aligned_cols=30 Identities=7% Similarity=0.051 Sum_probs=21.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+|+..+-.++.+|-++|||+--+
T Consensus 56 eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 56 DLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 335677999999999999999999998643
No 104
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=37.95 E-value=38 Score=23.43 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
.+.++| ++.+|+|...+-.+.+.|-+.|+|..
T Consensus 35 ~~~~el----a~~l~is~~tv~~~l~~L~~~gli~~ 66 (114)
T 2oqg_A 35 QSASSL----ATRLPVSRQAIAKHLNALQACGLVES 66 (114)
T ss_dssp BCHHHH----HHHSSSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHH----HHHHCcCHHHHHHHHHHHHHCCCeeE
Confidence 455554 56789999999999999999999975
No 105
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=37.72 E-value=28 Score=26.83 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=28.1
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+-+.++| ++.+|+++..+-.++.+|-++|||+--+
T Consensus 57 ~~t~~eL----a~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 57 ETTLNNI----ARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp GCCHHHH----HHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHH----HHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4454544 5677999999999999999999998643
No 106
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=37.64 E-value=36 Score=24.87 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|.+..+|....+...++++.-+..++..|-++|||+--+
T Consensus 24 ~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 24 PQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp CEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 457777777765555699999999999999999998754
No 107
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=36.64 E-value=30 Score=26.57 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=24.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
+.++.+|+|+..+....++|-+.|+|.
T Consensus 36 eLA~~lglS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 36 ELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 446778999999999999999999996
No 108
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=36.40 E-value=45 Score=23.93 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+++..+-.++..|-++|||+--+
T Consensus 50 eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 50 HIGEKWSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEeecc
Confidence 345678999999999999999999998543
No 109
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=35.72 E-value=37 Score=24.37 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++| ++.+|+|...+-.+.+.|-+.|+|..-|
T Consensus 57 ~s~~eL----a~~l~is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 57 LCVCDI----ANILGVTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp EEHHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred cCHHHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 566655 4567999999999999999999998754
No 110
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=35.54 E-value=22 Score=26.02 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=24.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
+.++.+|+|+..+-.++..|-++|||+-
T Consensus 56 eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 56 QITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3466789999999999999999999995
No 111
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=35.41 E-value=39 Score=25.13 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=32.5
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
.++|.+.-+...+++|++.-++-.++..+-|+|++.
T Consensus 43 ~hTTvSVERtVlr~mGidgvda~~iVd~~~e~gLLg 78 (121)
T 3kp1_E 43 KNTTPSIERSVLLRMGFSSLEAKAIVDKTMDRGLMG 78 (121)
T ss_dssp HEECHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCGG
T ss_pred cCCccHHHHHHHHHhCCCccchHHHHHHHHHccccc
Confidence 378889999999999999999999999999998875
No 112
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=35.35 E-value=35 Score=24.71 Aligned_cols=27 Identities=4% Similarity=-0.042 Sum_probs=24.4
Q ss_pred HHhC--CCCHHHHHHHHHHHhhccceecc
Q 045217 108 SSAL--GYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 108 ~~~~--g~sa~~tl~iaQ~LYE~glITYP 134 (224)
++.+ |+|+..+-+.++.|-+.|+|+..
T Consensus 34 A~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 34 EDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp HTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 5677 99999999999999999999864
No 113
>3bz6_A UPF0502 protein pspto_2686; APC84902, conserved domain, pseudomonas syringae PV. tomato DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} SCOP: a.4.5.75 a.4.5.75
Probab=35.33 E-value=24 Score=28.07 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=37.3
Q ss_pred cccccCCCcccHHHHHHHHHHhCC------CCHHHHHHHHHHHhhcccee
Q 045217 89 QESKVRPCGLNTVNLLKVASSALG------YGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 89 ~~~~~pP~p~~l~~Lq~~a~~~~g------~sa~~tl~iaQ~LYE~glIT 132 (224)
+....=--|++|..|...||.|-+ +|-.++.++...|-.+||++
T Consensus 37 ~~TTPd~YPLsLNaL~~aCNQKsnR~PVm~l~e~eV~~ald~L~~~~lv~ 86 (183)
T 3bz6_A 37 QATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTR 86 (183)
T ss_dssp HHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEE
T ss_pred cccCCCcCcchHHHHHHHhccccccCccccCCHHHHHHHHHHHHHCCCeE
Confidence 444455578999999999999855 88999999999999999995
No 114
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=35.21 E-value=39 Score=22.93 Aligned_cols=34 Identities=9% Similarity=-0.103 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++| ++.+|+|...+-.+++.|-+.|+|..-+
T Consensus 44 ~~~~eL----a~~l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 44 RSEEEI----MQTLSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp CCHHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 555555 5567999999999999999999998655
No 115
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=35.14 E-value=34 Score=25.70 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++| ++.+|++..-+-.++.+|-++|||+--+
T Consensus 69 ~t~~eL----a~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 69 QSQIQL----AKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp EEHHHH----HHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCHHHH----HHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 454444 5677999999999999999999998644
No 116
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=34.82 E-value=35 Score=27.00 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=27.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
++.+..+|.|+..+-.+..+|-+.|+|++-|-
T Consensus 181 ~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~ 212 (250)
T 3e6c_C 181 KSIGEITGVHHVTVSRVLASLKRENILDKKKN 212 (250)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCC
Confidence 34467789999999999999999999998664
No 117
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=34.81 E-value=31 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=28.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|++.+..+|.|+..+-.+..+|-+.|+|++.|
T Consensus 189 ~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~ 220 (232)
T 1zyb_A 189 MDDLARCLDDTRLNISKTLNELQDNGLIELHR 220 (232)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSCEEET
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCEEecC
Confidence 56667889999999999999999999999865
No 118
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=34.74 E-value=24 Score=26.23 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+++..+-.++.+|-++|||+--+
T Consensus 65 eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 65 KLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp HHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 446778999999999999999999998543
No 119
>1em9_A GAG polyprotein capsid protein P27; virus/viral protein; 2.05A {Rous sarcoma virus - prague C} SCOP: a.73.1.1
Probab=34.20 E-value=39 Score=26.16 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=36.6
Q ss_pred cccccCCCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccce
Q 045217 89 QESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131 (224)
Q Consensus 89 ~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glI 131 (224)
+....-|++|.+..=.++|...+|.++-=||.+++.|=...|+
T Consensus 7 ~~~~w~pl~~K~ikeLk~A~~~yG~~aP~T~a~lEaL~~~~L~ 49 (154)
T 1em9_A 7 EGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLL 49 (154)
T ss_dssp SSEEECCCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHTSSCCC
T ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHcCCCC
Confidence 5566889999998888888999999999999999999755443
No 120
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.08 E-value=70 Score=20.84 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=31.7
Q ss_pred CcccHHHHHHHHHHhC-CCCHHHHHHHHHHHhhccceec
Q 045217 96 CGLNTVNLLKVASSAL-GYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 96 ~p~~l~~Lq~~a~~~~-g~sa~~tl~iaQ~LYE~glITY 133 (224)
.|++..+|...+.+.. ++|..-+-.+.+.|-+.|+|.-
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 4688888888775543 7999999999999999999974
No 121
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=34.03 E-value=38 Score=24.94 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=25.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+++..+-.++.+|-++|||+--+
T Consensus 56 eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 56 KIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 446778999999999999999999998543
No 122
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=33.85 E-value=46 Score=23.41 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.4
Q ss_pred HHHHhC-CCCHHHHHHHHHHHhhccceec
Q 045217 106 VASSAL-GYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 106 ~a~~~~-g~sa~~tl~iaQ~LYE~glITY 133 (224)
+..+.+ |+|...+-.++..|-+.|||.-
T Consensus 40 eLa~~l~~is~~tvs~~L~~Le~~GlI~r 68 (112)
T 1z7u_A 40 ELMRALDGITQRVLTDRLREMEKDGLVHR 68 (112)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCEEE
Confidence 345678 9999999999999999999974
No 123
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=33.62 E-value=20 Score=26.08 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=19.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+++..+-.++.+|-++|||+--+
T Consensus 62 eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 62 DLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 346778999999999999999999997543
No 124
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=33.20 E-value=19 Score=26.48 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=25.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|++...+-.++..|-++|||+--
T Consensus 67 ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 67 KLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 44677899999999999999999999853
No 125
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=33.03 E-value=43 Score=23.20 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++| ++.+|+|...+-.+.+.|-+.|+|..-|
T Consensus 40 ~~~~el----a~~l~is~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 40 ASVGHI----SHQLNLSQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp BCHHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 455555 5667999999999999999999997655
No 126
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=32.89 E-value=27 Score=26.12 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=22.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+++..+-.++.+|-++|||+--+
T Consensus 67 eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 67 QIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 346778999999999999999999998644
No 127
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=32.73 E-value=48 Score=23.82 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
|.+..+| +..+|+|+.-+.++.+.|-+.|+|..-|-
T Consensus 26 ~~s~~el----a~~~~i~~~~v~~il~~L~~~Glv~~~~g 61 (129)
T 2y75_A 26 PTSLKSI----AQTNNLSEHYLEQLVSPLRNAGLVKSIRG 61 (129)
T ss_dssp CBCHHHH----HHHTTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred cCCHHHH----HHHHCcCHHHHHHHHHHHHHCCceEecCC
Confidence 4565554 57789999999999999999999987664
No 128
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=32.54 E-value=37 Score=26.71 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=28.3
Q ss_pred HHHHHHhCCCCH-HHHHHHHHHHhhccceeccCC
Q 045217 104 LKVASSALGYGP-QMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 104 q~~a~~~~g~sa-~~tl~iaQ~LYE~glITYPRT 136 (224)
|++.+..+|.|. +.+-.+..+|-+.|+|++.|-
T Consensus 172 ~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~ 205 (238)
T 2bgc_A 172 MQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNS 205 (238)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCC
Confidence 455578899999 799999999999999998764
No 129
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=32.47 E-value=42 Score=26.40 Aligned_cols=33 Identities=9% Similarity=0.247 Sum_probs=27.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
|.+.++.+|++...+-.++..|-++|||+--+.
T Consensus 65 ~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~ 97 (207)
T 2fxa_A 65 ISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKR 97 (207)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 445577899999999999999999999986543
No 130
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=32.44 E-value=42 Score=22.37 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=24.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
+.++++|+|...+-..+.+|-+.|+|.-
T Consensus 36 eLA~~Lgvs~~tV~~~L~~L~~~G~I~~ 63 (77)
T 1qgp_A 36 DLSGKLGTPKKEINRVLYSLAKKGKLQK 63 (77)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3467789999999999999999999965
No 131
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=32.19 E-value=56 Score=22.69 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHHhC-CCCHHHHHHHHHHHhhccceec
Q 045217 98 LNTVNLLKVASSAL-GYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~-g~sa~~tl~iaQ~LYE~glITY 133 (224)
.+.++| .+.+ |+|+..+-.+...|-+.|+|+-
T Consensus 39 ~~~~eL----~~~l~gis~~~ls~~L~~Le~~GlV~r 71 (107)
T 2fsw_A 39 IRYGEL----KRAIPGISEKMLIDELKFLCGKGLIKK 71 (107)
T ss_dssp EEHHHH----HHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHH----HHHcccCCHHHHHHHHHHHHHCCCEEE
Confidence 455555 4566 5999999999999999999973
No 132
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=31.87 E-value=54 Score=23.12 Aligned_cols=30 Identities=13% Similarity=0.291 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHhhccceec
Q 045217 100 TVNLLKVASSAL-GYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 100 l~~Lq~~a~~~~-g~sa~~tl~iaQ~LYE~glITY 133 (224)
.++| .+.+ |+|+.-.-.....|-+.|||+-
T Consensus 45 ~~eL----~~~l~gis~~~ls~~L~~Le~~GlV~r 75 (111)
T 3df8_A 45 FNDI----RSSIPGISSTILSRRIKDLIDSGLVER 75 (111)
T ss_dssp HHHH----HHTSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHH----HHHccCCCHHHHHHHHHHHHHCCCEEE
Confidence 5555 5678 9999999999999999999974
No 133
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=31.32 E-value=34 Score=24.07 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=26.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
++++.+|+|..-+-.+.+.|-+.|+|..-|
T Consensus 50 ela~~l~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 50 DLAEAIGMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 345677999999999999999999998766
No 134
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=31.30 E-value=45 Score=24.85 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
.+.++|+ +.+|+|+.-.-.....|-+.|||+=
T Consensus 38 ~~~~eLa----~~lgis~~tls~~L~~Le~~GlI~r 69 (146)
T 2f2e_A 38 TRFGEFQ----KSLGLAKNILAARLRNLVEHGVMVA 69 (146)
T ss_dssp CSHHHHH----HHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHH----HHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 3455554 4569999999999999999999963
No 135
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=31.09 E-value=49 Score=24.43 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=24.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
+.++.+|+|+..+....+.|-+.|+|.-
T Consensus 26 ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 26 EISKITGLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 4467789999999999999999999974
No 136
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=30.69 E-value=51 Score=22.20 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=23.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
+.++.||+|+.-+-.....|=++|+|.-
T Consensus 29 EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 29 DIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 3467789999999999999999999964
No 137
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=30.52 E-value=46 Score=24.52 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=27.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++.+|+|..-+-.+.+.|-+.|||..-+
T Consensus 58 ~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 58 VDMAARLGVSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 4667889999999999999999999998644
No 138
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=29.37 E-value=58 Score=23.51 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=24.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+|...+....+.|-+.|+|.--+
T Consensus 23 ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 23 EIAKKLGISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEeccc
Confidence 445677999999999999999999996333
No 139
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=29.33 E-value=51 Score=22.38 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
.+..+| ++++|+|-..+-....+|-+.|+|..
T Consensus 28 ~t~~eL----A~~Lgvsr~tV~~~L~~Le~~G~I~~ 59 (81)
T 1qbj_A 28 TTAHDL----SGKLGTPKKEINRVLYSLAKKGKLQK 59 (81)
T ss_dssp BCHHHH----HHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 455555 56789999999999999999999975
No 140
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.23 E-value=65 Score=19.51 Aligned_cols=24 Identities=8% Similarity=-0.040 Sum_probs=17.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhc
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQ 128 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~ 128 (224)
++.+..+|+|...+-....+++++
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 355677788887777777777763
No 141
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=28.58 E-value=82 Score=23.95 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=35.1
Q ss_pred cccCCCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccce
Q 045217 91 SKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFI 131 (224)
Q Consensus 91 ~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glI 131 (224)
...-|++|.+-.=.++|.+.||-++-=||.++++|=..-|+
T Consensus 14 ~~~~pl~~K~iKeLk~Av~~YGp~APyT~~lle~la~~~Lt 54 (140)
T 2kgf_A 14 RHHNGFDFAVIKELKTAASQYGATAPYTLAIVESVADNWLT 54 (140)
T ss_dssp EEECCCCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHTSBCC
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHhCCCC
Confidence 56789999888888888999999999999999999864443
No 142
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=28.33 E-value=55 Score=22.66 Aligned_cols=27 Identities=7% Similarity=-0.027 Sum_probs=24.2
Q ss_pred HHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 108 SSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 108 ~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+..+|+|+..+-.....|-++|||.--
T Consensus 27 a~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 27 MYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 456799999999999999999999864
No 143
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=28.30 E-value=59 Score=22.85 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=25.2
Q ss_pred HHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 107 ASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 107 a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.++.||.|..-+-+..+.|-+.|+|..-+
T Consensus 49 La~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 49 IADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 46788999999999999999999997543
No 144
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=28.23 E-value=53 Score=21.37 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=21.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccce
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFI 131 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glI 131 (224)
+....|||+-+++-...+.||-.|-+
T Consensus 23 EVAA~f~w~Le~ar~aLeqLf~~G~L 48 (68)
T 3i71_A 23 EVAAHFGWPLEKARNALEQLFSAGTL 48 (68)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCCcHHHHHHHHHHHHhcchh
Confidence 34568999999999999999987755
No 145
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=28.19 E-value=56 Score=23.10 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++| ++.+|+|...+-.+...|-+.|+|+.-|
T Consensus 32 ~~~~eL----a~~l~is~~tvs~hL~~L~~~GlV~~~~ 65 (118)
T 3f6o_A 32 ATVSEL----AKPFDMALPSFMKHIHFLEDSGWIRTHK 65 (118)
T ss_dssp EEHHHH----HTTCCSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHH----HHHhCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 566655 5678999999999999999999997644
No 146
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=27.92 E-value=71 Score=21.65 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=23.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
..+++||++-+.+-.++=+|.++|++-
T Consensus 34 ~IAkkLg~sK~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 34 SLSNRLKINKKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 346899999999999999999999883
No 147
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=27.90 E-value=64 Score=23.60 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHhC-CCCHHHHHHHHHHHhhcccee
Q 045217 98 LNTVNLLKVASSAL-GYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~-g~sa~~tl~iaQ~LYE~glIT 132 (224)
.+.++| .+.+ |+|+.-.-..+..|-+.|||+
T Consensus 49 ~~~~eL----a~~l~gis~~tls~~L~~Le~~GlV~ 80 (131)
T 1yyv_A 49 HRFSDL----RRXMGGVSEXMLAQSLQALEQDGFLN 80 (131)
T ss_dssp EEHHHH----HHHSTTCCHHHHHHHHHHHHHHTCEE
T ss_pred CCHHHH----HHHhccCCHHHHHHHHHHHHHCCcEE
Confidence 445555 4566 799999999999999999997
No 148
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=27.56 E-value=41 Score=23.02 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++|. +.+|+|...+-.+.+.|-+.|+|..-|
T Consensus 37 ~~~~ela----~~l~is~~tvs~~L~~L~~~Glv~~~~ 70 (102)
T 3pqk_A 37 FSVGELE----QQIGIGQPTLSQQLGVLRESGIVETRR 70 (102)
T ss_dssp BCHHHHH----HHHTCCTTHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHH----HHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 5666664 456999999999999999999998655
No 149
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=27.54 E-value=42 Score=24.15 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=22.0
Q ss_pred HHhCCCCHHHHHHHHHHHhhcccee
Q 045217 108 SSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 108 ~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
.+.+|+|-..=.++.|.|.|.|||.
T Consensus 23 ~e~l~Ise~~~~~il~~L~d~GyI~ 47 (102)
T 2hgc_A 23 ENDIGVTEDQFDDAVNFLKREGYII 47 (102)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHhcCCCHHHHHHHHHHHHHCCCcc
Confidence 3567999999999999999999983
No 150
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=27.52 E-value=58 Score=24.93 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=25.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.+|+|+..+....++|-+.|+|.--+
T Consensus 46 eLA~~lglS~~tv~~rl~~L~~~G~I~~~~ 75 (171)
T 2e1c_A 46 EISKITGLAESTIHERIRKLRESGVIKKFT 75 (171)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCeEeee
Confidence 346678999999999999999999997433
No 151
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=27.12 E-value=55 Score=26.79 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=33.3
Q ss_pred CCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCccc
Q 045217 95 PCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAY 141 (224)
Q Consensus 95 P~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l 141 (224)
+.+.++++| ++.+|++...+..+++.|-+.||+..-..+..|-
T Consensus 19 ~~~lsl~ei----a~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~ 61 (260)
T 3r4k_A 19 RLEIGLSDL----TRLSGMNKATVYRLMSELQEAGFVEQVEGARSYR 61 (260)
T ss_dssp BSEEEHHHH----HHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEE
T ss_pred CCCCCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEE
Confidence 346788877 5667999999999999999999998744333443
No 152
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=27.12 E-value=50 Score=23.82 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++| ++.+|+|...+-.+.+.|-+.|+|..-|
T Consensus 60 ~s~~el----a~~lgis~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 60 LCVGDL----AQAIGVSESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp BCHHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 455544 5677999999999999999999998755
No 153
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=26.38 E-value=43 Score=30.77 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=21.6
Q ss_pred HHhCCCCHHHHHHHHHHHhhccceeccCC
Q 045217 108 SSALGYGPQMAMQLAERLYTQGFISYPRT 136 (224)
Q Consensus 108 ~~~~g~sa~~tl~iaQ~LYE~glITYPRT 136 (224)
++..+++.+++-+++.+||+.|+|+|-|.
T Consensus 381 a~~a~i~~k~vR~~Ly~L~~~g~v~~qev 409 (534)
T 2xub_A 381 EDFAMIPAKEAKDMLYKMLSENFMSLQEI 409 (534)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTCC-----
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCeEEEEc
Confidence 44458999999999999999999999765
No 154
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=26.38 E-value=59 Score=21.93 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
+.+..||++.+++-+-.|+|=+.|-||
T Consensus 26 dLA~~F~l~t~~~i~RI~~Le~~g~lt 52 (72)
T 1wi9_A 26 DLAFQMGLRTQDAINRIQDLLTEGTLT 52 (72)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHhCCChHHHHHHHHHHHHCCCeE
Confidence 457789999999999999999976655
No 155
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=26.20 E-value=84 Score=22.33 Aligned_cols=67 Identities=7% Similarity=-0.002 Sum_probs=44.5
Q ss_pred HHHHHHHHccCCceEEEEEeeecccccCCCcccHHHHHHHHHHhC-C-CCHHHHHHHHHHHhhccceecc
Q 045217 67 ATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSAL-G-YGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 67 a~~~~~~~~~~~~~~V~~v~~k~~~~~pP~p~~l~~Lq~~a~~~~-g-~sa~~tl~iaQ~LYE~glITYP 134 (224)
-+.++..+.+...+. .--+.+-..+..|.=|.=++|-.=.-... | -+-.++..++|.|-+.|+|---
T Consensus 21 l~~iv~~M~~p~~Gv-~i~dr~~~~~~~~~~F~G~dlVdWL~~~~~~~~~r~eAv~lg~~Ll~~G~I~hv 89 (105)
T 1fsh_A 21 MSAIVRVMQLPDSGL-EIRDRMWLKITIANAVIGADVVDWLYTHVEGFKERREARKYASSMLKHGFLRHT 89 (105)
T ss_dssp HHHHHHHHHSTTSSS-CSSCEEETTEEESSCCHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTTEECS
T ss_pred HHHHHHHHhCCCCCc-eeEEeEeCCEECCceeEcHHHHHHHHHhCcCCCCHHHHHHHHHHHHHCCcEEEc
Confidence 345666665433332 11122223456777788888877666666 5 5899999999999999999654
No 156
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=25.65 E-value=60 Score=25.50 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
.+.++| ++.+|+|+..+....+.|-+.|+|.-
T Consensus 34 ~s~~eL----A~~lglS~stv~~~l~~Le~~GlI~~ 65 (192)
T 1uly_A 34 MTISQL----SEILGKTPQTIYHHIEKLKEAGLVEV 65 (192)
T ss_dssp BCHHHH----HHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 455554 56779999999999999999999964
No 157
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=24.93 E-value=67 Score=25.66 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=27.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 105 KVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 105 ~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++.+|+|+.-+-.++.+|-++|||++-+
T Consensus 28 ~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (230)
T 1fx7_A 28 ARIAERLDQSGPTVSQTVSRMERDGLLRVAG 58 (230)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 4556788999999999999999999999855
No 158
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=24.86 E-value=1.1e+02 Score=21.36 Aligned_cols=48 Identities=8% Similarity=0.164 Sum_probs=35.9
Q ss_pred HHHHHHHHHHccCCceEEEEEeeecccccCCCcccHHHHHHHHHHhCCCCH----HHHHHHHHHHhhcccee
Q 045217 65 DVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGP----QMAMQLAERLYTQGFIS 132 (224)
Q Consensus 65 ~~a~~~~~~~~~~~~~~V~~v~~k~~~~~pP~p~~l~~Lq~~a~~~~g~sa----~~tl~iaQ~LYE~glIT 132 (224)
+.|..+.+.|.+.+ +..++-.....+|+-.+ .++....+.|.++|+|.
T Consensus 43 ~~a~~Iw~l~DG~r--------------------tv~eIv~~L~~~y~~~~e~i~~DV~~FL~~L~~~g~I~ 94 (95)
T 3g2b_A 43 DIALVVAQRYDGTQ--------------------SLAQIAQTLAAEFDADASEIETDVIELTTTLHQKRLLR 94 (95)
T ss_dssp THHHHHHHHCCSSS--------------------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHccCCC--------------------CHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHCcCEe
Confidence 35667788886532 45677777788898774 57888999999999984
No 159
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=24.85 E-value=64 Score=26.46 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=26.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceecc
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYP 134 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYP 134 (224)
+.++.+|++...+-.+++.|-+.|||..-
T Consensus 171 eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 171 ELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 56788899999999999999999999764
No 160
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=24.76 E-value=72 Score=22.51 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=28.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccCCCCcccCC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPS 143 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l~~ 143 (224)
+.++.||.|..-+-++.+.|-+.|+|.--+---.++..
T Consensus 38 ~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~G~~V~~ 75 (113)
T 3tqn_A 38 KISTEYQINPLTVSKAYQSLLDDNVIEKRRGLGMLVKA 75 (113)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECT
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEEEeC
Confidence 34678999999999999999999999643333334443
No 161
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=23.04 E-value=18 Score=28.14 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
|++.+..+|.|...+-.+..+|-+.|+|++.|
T Consensus 167 ~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~ 198 (213)
T 1o5l_A 167 LEELSRLFGCARPALSRVFQELEREGYIEKHG 198 (213)
T ss_dssp --------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcC
Confidence 66777889999999999999999999999865
No 162
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=23.00 E-value=98 Score=21.57 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhhccceec
Q 045217 101 VNLLKVASSALGYGPQMAMQLAERLYTQGFISY 133 (224)
Q Consensus 101 ~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITY 133 (224)
.+|.+.....+++|+...-.+..+|=++|||+-
T Consensus 26 yel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~ 58 (108)
T 3l7w_A 26 YDISQTIKLIASIKESTLYPILKKLEKAGYLST 58 (108)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEE
Confidence 345555556789999999999999999999964
No 163
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=22.66 E-value=45 Score=27.47 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=30.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCc
Q 045217 104 LKVASSALGYGPQMAMQLAERLYTQGFISYPRTEST 139 (224)
Q Consensus 104 q~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~ 139 (224)
|++.++++++++..+-.+..+|.++|||+=-|....
T Consensus 53 ~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~D 88 (250)
T 1p4x_A 53 FKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKID 88 (250)
T ss_dssp HHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSS
T ss_pred HHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCC
Confidence 667788999999999999999999999987655443
No 164
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.27 E-value=84 Score=22.62 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=28.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccCCCCcccCC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPS 143 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l~~ 143 (224)
+.++.||.|..-+-++.+.|-+.|+|.--+---.++..
T Consensus 42 ~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
T 3neu_A 42 EMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEEEec
Confidence 34678999999999999999999999543333444554
No 165
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=22.26 E-value=94 Score=21.45 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=26.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
+.++.||.|+.-+-.-...|-++|+|.=-|
T Consensus 21 eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 21 QLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 557899999999999999999999998555
No 166
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=22.26 E-value=98 Score=22.54 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=28.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhccceeccCCCCcccCC
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPS 143 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l~~ 143 (224)
+.++.||.|..-+-++.+.|-..|+|.--+---.++..
T Consensus 33 ~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~G~~V~~ 70 (129)
T 2ek5_A 33 ELAAFHRINPATARNGLTLLVEAGILYKKRGIGMFVSA 70 (129)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEEECT
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCEEEEec
Confidence 44688999999999999999999999654433444443
No 167
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=22.20 E-value=79 Score=23.74 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
.+.++| .+.+|+|...+-...+.|-+.|||+--|
T Consensus 72 ~t~~eL----a~~lgls~stvs~hL~~L~~aGlV~~~~ 105 (151)
T 3f6v_A 72 QTVNNL----AAHFPASRSAISQHLRVLTEAGLVTPRK 105 (151)
T ss_dssp EEHHHH----HTTSSSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 455554 5778999999999999999999998543
No 168
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=22.12 E-value=26 Score=26.64 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 98 LNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 98 ~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
-+.++| ++.+|++...+..++.+|-++|||+--+
T Consensus 87 ~t~~eL----a~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 87 LRPTEL----SALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp BCHHHH----HHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CCHHHH----HHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 455554 5678999999999999999999998643
No 169
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=22.09 E-value=1e+02 Score=20.67 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=24.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhcccee
Q 045217 106 VASSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 106 ~a~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
+.++.||.|+.-+-.-...|-++|+|.
T Consensus 21 eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 21 QISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 557889999999999999999999985
No 170
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=21.76 E-value=80 Score=23.44 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=36.5
Q ss_pred cccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCccc-C---CCcChHHHHHHHh
Q 045217 97 GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAY-P---SSFDFRGTLSALA 155 (224)
Q Consensus 97 p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l-~---~~~~~~~~l~~l~ 155 (224)
|.+..+| +..+|+|+.-+.++.+.|-+.|+|.--|-.-.|. . ++..+.+++.++.
T Consensus 30 ~~~~~~i----A~~~~i~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p~~Itl~dVi~a~e 88 (149)
T 1ylf_A 30 LCTSDYM----AESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHEITLLDVYHAVN 88 (149)
T ss_dssp GCCHHHH----HHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSCGGGCBHHHHHHHHC
T ss_pred CcCHHHH----HHHHCcCHHHHHHHHHHHHHCCcEEEccCCCceEeCCChhhCcHHHHHHHHc
Confidence 4555544 5678999999999999999999998766532232 2 2234566666654
No 171
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=21.67 E-value=55 Score=23.24 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=24.5
Q ss_pred HHhCCCCHHHHHHHHHHHhhccceeccC
Q 045217 108 SSALGYGPQMAMQLAERLYTQGFISYPR 135 (224)
Q Consensus 108 ~~~~g~sa~~tl~iaQ~LYE~glITYPR 135 (224)
++.+|+|...+-...+.|-+.|+|..-|
T Consensus 41 a~~lgis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 41 AAHLGLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHSSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 4567999999999999999999997644
No 172
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=21.35 E-value=63 Score=26.75 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=31.3
Q ss_pred CcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCccc
Q 045217 96 CGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAY 141 (224)
Q Consensus 96 ~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l 141 (224)
.|.++++| ++.+|++...+..+++.|-+.||+..-. |..|-
T Consensus 44 ~~ltl~ei----a~~lgl~ksTv~RlL~tL~~~G~v~~~~-~~~Y~ 84 (275)
T 3mq0_A 44 RDLTAAEL----TRFLDLPKSSAHGLLAVMTELDLLARSA-DGTLR 84 (275)
T ss_dssp SCEEHHHH----HHHHTCC--CHHHHHHHHHHTTSEEECT-TSEEE
T ss_pred CCCCHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEECC-CCcEE
Confidence 36788877 5667999999999999999999999764 34453
No 173
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=21.06 E-value=65 Score=20.91 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHh
Q 045217 103 LLKVASSALGYGPQMAMQLAERLY 126 (224)
Q Consensus 103 Lq~~a~~~~g~sa~~tl~iaQ~LY 126 (224)
|-..|. ++||+..+|+.+-|.|=
T Consensus 17 L~~l~~-k~Gl~~~~vI~~SQeLD 39 (62)
T 2bzb_A 17 LIQLVA-RHGLDHDKVLLFSRDLD 39 (62)
T ss_dssp HHHHHH-HHHCCHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHH
Confidence 444444 67999999999999873
No 174
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=20.67 E-value=82 Score=25.81 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=12.0
Q ss_pred HHhCCCCHHHHHHHHHHHhhcccee
Q 045217 108 SSALGYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 108 ~~~~g~sa~~tl~iaQ~LYE~glIT 132 (224)
++.+++++..+-.++.+|-++|||+
T Consensus 181 a~~l~i~~~tvt~~v~rLe~~GlV~ 205 (250)
T 1p4x_A 181 IETIHHKYPQTVRALNNLKKQGYLI 205 (250)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHTSSE
T ss_pred HHHHCCChhhHHHHHHHHHHCCCEE
Confidence 3344444444444555555555554
No 175
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=20.57 E-value=1.1e+02 Score=19.67 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhc---CcCcccC
Q 045217 196 DMLGKDAWRLYSYVCQHFLGTV---SPDCKYI 224 (224)
Q Consensus 196 ~~L~~~e~~iY~lI~~r~la~f---~~~a~y~ 224 (224)
..|+++|+..|.--+.+--..+ +|+|.|.
T Consensus 44 k~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 75 (76)
T 1hry_A 44 KMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (76)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 5799999999998887755543 7777763
No 176
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.38 E-value=1.7e+02 Score=21.07 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=31.2
Q ss_pred CcccHHHHHHHHHHhC-CCCHHHHHHHHHHHhhcccee
Q 045217 96 CGLNTVNLLKVASSAL-GYGPQMAMQLAERLYTQGFIS 132 (224)
Q Consensus 96 ~p~~l~~Lq~~a~~~~-g~sa~~tl~iaQ~LYE~glIT 132 (224)
.|++..+|...+.+.. ++|..-+-..++.|-|.|+|.
T Consensus 25 ~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 25 DFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 4678888888886654 799999999999999999885
Done!