BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045218
         (405 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCQ|A Chain A, Solution Structure Of The Endonuclease Nob1 From
           P.Horikoshii
          Length = 165

 Score = 38.1 bits (87), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 72  TVPEVLAEIRDPVSRNRLNFIPFS--IDSMEPSPDSLNKVIKFARATGDLQTLSDVDLKL 129
           T P V+ EI+D  S+  L  +  +  +   EPS +S++++I+ A+ TG++  LS  D+++
Sbjct: 30  TTPSVVEEIKDRESKIFLESLISAGKVKIAEPSKESIDRIIQVAKETGEVNELSKADIEV 89

Query: 130 IALTCTLETQMH 141
           +AL   L+ ++ 
Sbjct: 90  LALAYELKGEIF 101


>pdb|3L9R|A Chain A, Crystal Structure Of Bovine Cd1b3 With Endogenously Bound
           Ligands
 pdb|3L9R|C Chain C, Crystal Structure Of Bovine Cd1b3 With Endogenously Bound
           Ligands
 pdb|3L9R|E Chain E, Crystal Structure Of Bovine Cd1b3 With Endogenously Bound
           Ligands
 pdb|3L9R|G Chain G, Crystal Structure Of Bovine Cd1b3 With Endogenously Bound
           Ligands
          Length = 283

 Score = 32.0 bits (71), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 89  LNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTC 134
           L+F+     S  P+PDS ++  KF   T   Q +SD+  +L++ TC
Sbjct: 121 LDFVSIQNHSCVPAPDSGSRGQKFCALTTQYQGISDIIERLLSETC 166


>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
 pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
 pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
 pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
 pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
 pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
          Length = 499

 Score = 28.1 bits (61), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 233 EHGLRRPRRYLPKKIEVNIE----GKKMVAAGIDASQGQVEDDAADWMPAVSR 281
           EHG++  R+++P KIE  IE    G+  V A    S+  +ED+    + AV R
Sbjct: 242 EHGIKFIRQFVPTKIE-QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGR 293


>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Reduced C-Terminal Tail
 pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Reduced C-Terminal Tail
 pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Reduced C-Terminal Tail
 pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Reduced C-Terminal Tail
 pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Reduced C-Terminal Tail
 pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Reduced C-Terminal Tail
 pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
 pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
 pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
 pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
 pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
 pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
           Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
          Length = 499

 Score = 28.1 bits (61), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 233 EHGLRRPRRYLPKKIEVNIE----GKKMVAAGIDASQGQVEDDAADWMPAVSR 281
           EHG++  R+++P KIE  IE    G+  V A    S+  +ED+    + AV R
Sbjct: 242 EHGIKFIRQFVPTKIE-QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGR 293


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.125    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,469,821
Number of Sequences: 62578
Number of extensions: 458587
Number of successful extensions: 839
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 8
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)