BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045218
(405 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UTK0|NOB1_SCHPO 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nob1 PE=3 SV=1
Length = 388
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 43 TEGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPS 102
++ I V+D II + L N A+ F T+P V+AEIRD SR + P
Sbjct: 2 SKSITHLVLDTGGIICSSTLLRNSAESFYTIPRVIAEIRDETSRKNFELWGDQVIQRVPK 61
Query: 103 PDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMH----------GTKHLRDAPP 151
P+ + KV +FA+ TGD +LS D++++ALT LE + + G KH+ PP
Sbjct: 62 PEFIKKVSEFAKQTGDYSSLSVTDIQILALTYELEVEFNGGDWRLRKYPGQKHINGKPP 120
>sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1
Length = 412
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 49 AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
V DA A ++ A L + T+ EV+ EIRD +R RL +P+ + EP P+ +
Sbjct: 7 VVADAGAFLRHA-ALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRL 65
Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
V +F++ TGD +LS D++++ALT LE + G HL+ P
Sbjct: 66 VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEP 107
>sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1
Length = 411
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 49 AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
V DA A ++ A L + T+ EV+ EIRD +R RL +P+ + EP P+ +
Sbjct: 7 VVADAGAFLRDA-ALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRL 65
Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
V +F++ TGD +LS D++++ALT LE + G HL+ P
Sbjct: 66 VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEP 107
>sp|Q8BW10|NOB1_MOUSE RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1
Length = 403
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 49 AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
V DA A ++ A L + T+ EV+ EIRD +R RL +P+ + EP P+ +
Sbjct: 7 VVADAGAFLRDA-PLQDIGKNIYTIREVVREIRDKATRRRLAVLPYQLRFKEPLPEYVRL 65
Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
V +F++ TGD +LS D++++ALT LE + G HL+ P
Sbjct: 66 VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKKEP 107
>sp|Q6VEU1|NOB1_RAT RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1
Length = 410
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 49 AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
V DA A ++ A L + T+ EV+ EIRD +R RL +P+ + EP P+ +
Sbjct: 7 VVADAGAFLRDA-PLQDIGKNIYTIREVVREIRDKATRRRLAVLPYELRFKEPFPEYVRL 65
Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
V +F++ TGD +LS D++++ALT LE + G HL+ P
Sbjct: 66 VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKKEP 107
>sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1
Length = 412
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 49 AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
V DA A ++ A L + T+ EV+ EIRD +R RL +P+ + EP P +
Sbjct: 7 VVADAGAFLRDA-ALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPQYVRL 65
Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
V +F++ TGD +LS D++++ALT LE + G HL+ P
Sbjct: 66 VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEP 107
>sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1
Length = 413
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 49 AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
V DA A + A L + T+ V++EIRD +R RL +P+ + EP P+ +
Sbjct: 7 VVADAGAFLLDA-ALQDIGKNIYTIRNVISEIRDKATRRRLAVLPYELRFKEPFPEYVRL 65
Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
V +F++ TGD +LS D++++ALT LE + G HL+ P
Sbjct: 66 VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEP 107
>sp|Q08444|NOB1_YEAST 20S-pre-rRNA D-site endonuclease NOB1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NOB1 PE=1 SV=1
Length = 459
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 41 NSTEGIAVAVVDANAII-QGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPF--SID 97
N T + ++DA +I Q + N+A F T P V EI+D +R L ++
Sbjct: 4 NQTAHVRALILDATPLITQSYTHYQNYAQSFYTTPTVFQEIKDAQARKNLEIWQSLGTLK 63
Query: 98 SMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQM-HGTKHLRDAP 150
+ PS +S+ KV FA+ TGD LS DL ++ALT LE ++ +G LR P
Sbjct: 64 LVHPSENSIAKVSTFAKLTGDYSVLSANDLHILALTYELEIKLNNGDWRLRKKP 117
>sp|O29862|VAPC8_ARCFU Putative ribonuclease VapC8 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=vapC8 PE=3 SV=1
Length = 166
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 46 IAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDS 105
+ V V+D++AI Q N VTVPEV+AEI D S + F ++ E SP+S
Sbjct: 4 VEVHVIDSSAIFQRKAVYRNM----VTVPEVVAEILDEASALYFSVKNFRVE--EASPES 57
Query: 106 LNKVIKFARATGDLQTLSDVDLKLIA 131
+ +V + AR TGD+ LSD D+K++A
Sbjct: 58 VEEVKEAARKTGDIHKLSDTDIKVLA 83
>sp|O58440|VAPC6_PYRHO Putative ribonuclease VapC6 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=vapC6 PE=1 SV=1
Length = 161
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 55/94 (58%), Gaps = 8/94 (8%)
Query: 50 VVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFS--IDSMEPSPDSLN 107
V+D++ IQG ++ + T P V+ EI+D S+ L + + + EPS +S++
Sbjct: 10 VLDSSVFIQGI-DIEGY-----TTPSVVEEIKDRESKIFLESLISAGKVKIAEPSKESID 63
Query: 108 KVIKFARATGDLQTLSDVDLKLIALTCTLETQMH 141
++I+ A+ TG++ LS D++++AL L+ ++
Sbjct: 64 RIIQVAKETGEVNELSKADIEVLALAYELKGEIF 97
>sp|Q9UZ20|VPC14_PYRAB Putative ribonuclease VapC14 OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=vapC14 PE=3 SV=1
Length = 161
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 50 VVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFS--IDSMEPSPDSLN 107
V+D++ IQG ++ + T P+V+ E++D SR L + S + +EPS ++L
Sbjct: 8 VLDSSVFIQGL-DIEGY-----TTPKVVDEVKDRESRILLESLISSGKVKVVEPSKEALR 61
Query: 108 KVIKFARATGDLQTLSDVDLKLIALTCTLETQMH 141
V A TG+++ LS+ DL+++AL L+ ++
Sbjct: 62 AVKNAALKTGEIEELSEADLEVLALAYELKAEVF 95
>sp|Q58869|VAPC5_METJA Putative ribonuclease VapC5 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=vapC5 PE=3 SV=1
Length = 197
Score = 38.9 bits (89), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 46 IAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEI--RDPVSRNRLNFIPFSIDSMEPSP 103
+ V V+DA+AII G + + + + T PEVL EI + + L+F I M P+
Sbjct: 31 MKVKVLDASAIIHGYNPIIEEGEHYTT-PEVLEEIESKKIIVEQALDFGKLKI--MSPNR 87
Query: 104 DSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMH 141
+ + KV + + TGD LS D+ ++AL L ++
Sbjct: 88 EYIKKVEEVVKKTGD--NLSQQDIGVLALALNLNAILY 123
>sp|Q9YD10|VAPC3_AERPE Putative ribonuclease VapC3 OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=vapC3 PE=3
SV=1
Length = 139
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 38 QSCNSTEGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFS-- 95
Q C+ T G V+D A I G + T P VL E+RD SR+ L + +
Sbjct: 6 QGCSPT-GREAIVLDTGAFIAG--KAAALPGRLATPPRVLEEVRDRGSRSLLELLQSTGR 62
Query: 96 IDSMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQ 139
++ + PS +L + + AR G L LS DL+++AL L Q
Sbjct: 63 LEVLAPSTRALERAREEARRAGVLGRLSGADLEVLALALDLAWQ 106
>sp|Q6IE62|PRS45_RAT Inactive serine protease 45 OS=Rattus norvegicus GN=Prss45 PE=2
SV=1
Length = 330
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 130 IALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSN--------VANLEEWEA 181
IAL C LET + K+++ P H N+K + + GWG +LE WEA
Sbjct: 139 IALLC-LETPVTFNKYIQPICLPEHNFNLKVGMKCWVTGWGQAKQHPSAKLTRSLELWEA 197
Query: 182 ----LDNDNADKLNTNSRILP--LRDLNLNVIAGDYHSENGSVESQGG 223
+DN N D++ P + + N+I H EN GG
Sbjct: 198 EVSIVDNKNCDRVFHKKTFYPQVIPLIRKNMICTTNHRENPCYGDPGG 245
>sp|Q5W283|TPSCM_MENPI Cis-muuroladiene synthase OS=Mentha piperita PE=1 SV=1
Length = 551
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 257 VAAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYYDSLTDKDSQQEKEMGDDSN 316
V I+ EDD D R R +R + +D DKD + E+ + SN
Sbjct: 87 VEYKIEQINAAAEDDGFDLFATALRFRLLRQHQRHVSCDVFDKFVDKDGKFEESL---SN 143
Query: 317 NVDESGNLEQQLHLGSEEAR 336
NV+ +L + H+G E R
Sbjct: 144 NVEGLLSLYEAAHVGFREER 163
>sp|A0KN00|LOLB_AERHH Outer-membrane lipoprotein LolB OS=Aeromonas hydrophila subsp.
hydrophila (strain ATCC 7966 / NCIB 9240) GN=lolB PE=3
SV=1
Length = 194
Score = 32.0 bits (71), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 166 LPGWGSNVANLEEW-EALDNDNADKLNTNSRILPLRDLNLNVIAGDYHSENG 216
L GW VA L EW + L +LN + + +RD ++ GDY ++G
Sbjct: 116 LTGWNIPVAGLPEWIKGLPGQAEFELNPDRSLASVRDGQWQIVYGDYRDQDG 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.126 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,683,940
Number of Sequences: 539616
Number of extensions: 6803490
Number of successful extensions: 23733
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 23315
Number of HSP's gapped (non-prelim): 534
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)