Query 045218
Match_columns 405
No_of_seqs 164 out of 338
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 11:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2463 Predicted RNA-binding 100.0 8.4E-32 1.8E-36 264.6 5.1 113 44-157 3-115 (376)
2 PRK12496 hypothetical protein; 99.8 1.4E-19 3.1E-24 162.4 8.4 93 47-142 2-96 (164)
3 COG1439 Predicted nucleic acid 99.8 1.4E-19 3E-24 166.0 7.5 91 48-139 8-100 (177)
4 smart00670 PINc Large family o 97.6 2.8E-06 6E-11 67.8 -3.5 87 49-137 1-98 (111)
5 PRK04358 hypothetical protein; 97.5 8.1E-05 1.7E-09 71.2 3.6 28 113-142 153-180 (217)
6 TIGR03875 RNA_lig_partner RNA 97.3 0.00016 3.4E-09 68.8 2.8 22 121-142 155-176 (206)
7 PF08745 UPF0278: UPF0278 fami 97.1 0.00023 4.9E-09 67.8 1.8 27 114-142 147-173 (205)
8 PF14367 DUF4411: Domain of un 95.4 0.042 9E-07 49.4 6.4 129 49-184 1-157 (162)
9 PF01850 PIN: PIN domain; Int 91.0 0.3 6.5E-06 38.8 3.8 89 49-141 1-108 (121)
10 TIGR00028 Mtu_PIN_fam Mycobact 88.3 1 2.2E-05 37.3 5.0 98 49-147 2-129 (142)
11 PF10130 PIN_2: PIN domain; I 86.5 0.49 1.1E-05 42.0 2.3 87 50-140 1-108 (133)
12 PF13638 PIN_4: PIN domain; PD 77.4 0.46 9.9E-06 39.8 -1.3 34 49-82 1-35 (133)
13 COG2405 Predicted nucleic acid 76.9 2.1 4.6E-05 39.8 2.8 81 49-138 2-88 (157)
14 PRK13764 ATPase; Provisional 63.3 6.5 0.00014 43.0 3.3 93 48-140 2-126 (602)
15 COG4374 PIN domain nuclease, a 61.2 12 0.00026 33.9 4.0 93 46-140 2-110 (130)
16 COG1569 Predicted nucleic acid 54.2 20 0.00043 33.2 4.3 79 48-139 2-106 (142)
17 COG5378 Predicted nucleotide-b 42.9 11 0.00025 35.4 1.0 88 48-139 16-126 (175)
18 COG1487 VapC Predicted nucleic 37.6 59 0.0013 27.6 4.4 92 47-140 2-111 (133)
19 COG1458 Predicted DNA-binding 37.0 14 0.0003 36.2 0.6 42 46-87 3-66 (221)
20 COG4113 Predicted nucleic acid 36.5 54 0.0012 29.6 4.2 93 46-142 1-115 (134)
21 TIGR00305 probable toxin-antit 34.0 56 0.0012 27.1 3.7 34 49-82 2-45 (114)
22 PRK13725 plasmid maintenance p 32.7 81 0.0018 27.4 4.6 92 48-141 3-113 (132)
23 COG1875 NYN ribonuclease and A 28.6 28 0.00061 37.1 1.2 88 47-142 3-119 (436)
24 COG4956 Integral membrane prot 27.6 45 0.00098 34.8 2.5 79 48-142 162-261 (356)
25 COG1848 Predicted nucleic acid 26.0 84 0.0018 26.7 3.5 86 48-137 1-117 (140)
26 PF09603 Fib_succ_major: Fibro 21.9 54 0.0012 28.9 1.6 19 169-187 72-90 (184)
27 PF13470 PIN_3: PIN domain 20.4 51 0.0011 26.9 1.1 38 49-86 2-50 (119)
28 COG1412 Uncharacterized protei 20.3 1.1E+02 0.0024 27.9 3.2 41 44-84 8-58 (136)
No 1
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.4e-32 Score=264.58 Aligned_cols=113 Identities=49% Similarity=0.726 Sum_probs=109.0
Q ss_pred CCceEEEEechhhhcCCCCcccccCcceehhhHhhhcCCHHHHhhhhcCCCCcEEeCCChhHHHHHHHHHHHhCCCCCCC
Q 045218 44 EGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLS 123 (405)
Q Consensus 44 ~~ik~lVLDTsAFIkg~~~L~~~a~kiYTtPeVI~EIRDk~SR~rLe~Lp~~LkIrEPs~EsIkkV~eFAKKTGD~~sLS 123 (405)
++|+++|+||+|||.+ ..++.+|+.|||+|+|+.||||..+|++|+.|||+|++|+|++++|++|++|||+||||++||
T Consensus 3 ~~i~hlViDt~aiI~~-~~l~n~a~~fYt~p~V~~EIrd~asRk~le~~pf~i~~rePspe~v~kV~~fak~TGDyssLS 81 (376)
T KOG2463|consen 3 PKIMHLVIDTGAIIEK-RILTNKADSFYTTPEVVNEIRDAASRKRLEFLPFTIKLREPSPEYVRKVIKFAKLTGDYSSLS 81 (376)
T ss_pred CceeEEEEeccccccc-cchhhhhhcccccHHHHHHhhCHHhhcchhhcccEEEEecCCHHHHHHHHHHHHhcCCccccc
Confidence 4589999999999999 778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcceeecccccccCCCCCccccc
Q 045218 124 DVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVN 157 (405)
Q Consensus 124 ~TDIkVIALAyeLe~E~~Gt~hLR~eP~~~~~v~ 157 (405)
.|||+||||||+|+.+.+|.++||+.|.+.++..
T Consensus 82 ~tDi~vlALTYeLe~e~~g~~~Lr~~p~~~~~~~ 115 (376)
T KOG2463|consen 82 DTDIKVLALTYELEAEVVGGDRLRKKPGDALDAS 115 (376)
T ss_pred cccceeeeeeeeeehhhcccccccccCcchhhcc
Confidence 9999999999999999999999999999887766
No 2
>PRK12496 hypothetical protein; Provisional
Probab=99.79 E-value=1.4e-19 Score=162.39 Aligned_cols=93 Identities=35% Similarity=0.493 Sum_probs=83.6
Q ss_pred eEEEEechhhhcCCCCcccccCcceehhhHhhhcCCHHHHhhhhcCCC--CcEEeCCChhHHHHHHHHHHHhCCCCCCCh
Q 045218 47 AVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPF--SIDSMEPSPDSLNKVIKFARATGDLQTLSD 124 (405)
Q Consensus 47 k~lVLDTsAFIkg~~~L~~~a~kiYTtPeVI~EIRDk~SR~rLe~Lp~--~LkIrEPs~EsIkkV~eFAKKTGD~~sLS~ 124 (405)
.++|+||||||++ ..+. .+++||||+|++||+|.+++.+|+.+.. .|+|++|+++++..|.+||++||||..||.
T Consensus 2 m~~VlDtS~~I~~-~~~~--~~~i~tp~~V~~Ev~d~~~~~~~~~l~~~~~i~v~~p~~~~i~~v~~~a~~tgd~~~Ls~ 78 (164)
T PRK12496 2 MIKVLDASAFIHG-YNPE--DGEHYTTPSVVEEVKDKESRLILESAISAGKLKILEPSPESIEKVEEAAIKTGDLMRLSN 78 (164)
T ss_pred CEEEEEChHHHcc-chhh--CCCEEecHHHHHHHhCHHHHHHHHHhcccCCeEEECCCHHHHHHHHHHHHhcCCccccch
Confidence 4799999999998 5443 4789999999999999999999987743 499999999999999999999999999999
Q ss_pred HHHHHHHhhhhcceeecc
Q 045218 125 VDLKLIALTCTLETQMHG 142 (405)
Q Consensus 125 TDIkVIALAyeLe~E~~G 142 (405)
+|++|||||++|......
T Consensus 79 ~D~~~iaLA~el~~~lvt 96 (164)
T PRK12496 79 TDIEVLALALELNGTLYT 96 (164)
T ss_pred hhHHHHHHHHHhCCcEEC
Confidence 999999999999876544
No 3
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=99.79 E-value=1.4e-19 Score=165.95 Aligned_cols=91 Identities=33% Similarity=0.502 Sum_probs=81.5
Q ss_pred EEEEechhhhcCCCCcccccCcceehhhHhhhcCCHHHHhhhhcCC--CCcEEeCCChhHHHHHHHHHHHhCCCCCCChH
Q 045218 48 VAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIP--FSIDSMEPSPDSLNKVIKFARATGDLQTLSDV 125 (405)
Q Consensus 48 ~lVLDTsAFIkg~~~L~~~a~kiYTtPeVI~EIRDk~SR~rLe~Lp--~~LkIrEPs~EsIkkV~eFAKKTGD~~sLS~T 125 (405)
.+|+||+|||+|..++. +....||||+|++||||.++|-.++.+. +.++|++|++|+++.|++.|++|||+..||.|
T Consensus 8 ~~vlDtsa~I~g~~~~~-~~g~~yttp~Vv~Eikd~~s~~~~e~~~~~~~~kv~~P~~e~vk~V~e~a~~tgd~~~LS~t 86 (177)
T COG1439 8 LYVLDTSAFINGKIPLL-LDGRLYTTPSVVEEIKDRESRSLLELLLESGKVKVAEPSTEYVKEVREAAKKTGDLGNLSPT 86 (177)
T ss_pred eEEecchhhccCCCCcc-cCCcccccHHHHHHHhchhhhHHHHHHhhhcCeeEecCCHHHHHHHHHHHHhhCcccccChh
Confidence 59999999999965532 1234899999999999999998887753 58999999999999999999999999999999
Q ss_pred HHHHHHhhhhccee
Q 045218 126 DLKLIALTCTLETQ 139 (405)
Q Consensus 126 DIkVIALAyeLe~E 139 (405)
||+|||||++|..+
T Consensus 87 Di~VlalAlel~~~ 100 (177)
T COG1439 87 DIEVLALALELGEE 100 (177)
T ss_pred hHHHHHHHHhhccc
Confidence 99999999999996
No 4
>smart00670 PINc Large family of predicted nucleotide-binding domains. From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi.
Probab=97.64 E-value=2.8e-06 Score=67.84 Aligned_cols=87 Identities=20% Similarity=0.155 Sum_probs=63.2
Q ss_pred EEEechhhhcCCCC---ccccc---CcceehhhHhhhcCCHH---HHhhhhcCC--CCcEEeCCChhHHHHHHHHHHHhC
Q 045218 49 AVVDANAIIQGAHN---LTNFA---DKFVTVPEVLAEIRDPV---SRNRLNFIP--FSIDSMEPSPDSLNKVIKFARATG 117 (405)
Q Consensus 49 lVLDTsAFIkg~~~---L~~~a---~kiYTtPeVI~EIRDk~---SR~rLe~Lp--~~LkIrEPs~EsIkkV~eFAKKTG 117 (405)
+|+||++||.. .. +..+. .++|+++.|+.|++... ++.+|..+. ..+.+..|.... ..+..++..+|
T Consensus 1 ~vlDTnvli~~-~~~~~~~~~~~~~~~~~i~~~v~~El~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 78 (111)
T smart00670 1 VVLDTNVLIDG-LIGKALEKLLEKKGEVYIPPTVLEELEYLAKLRSLKKLEELALEGKIKLKVLKEER-KLEEEILERLS 78 (111)
T ss_pred CEeeHHHHHHH-HHHHHHHHHHcCCCcEEECHHHHHHHHHHHHHHHHhhHHHHHHhcccccceeecCC-CeEEEecccCC
Confidence 58999999977 32 33221 57899999999999976 566666543 245565565553 24456777777
Q ss_pred CCCCCChHHHHHHHhhhhcc
Q 045218 118 DLQTLSDVDLKLIALTCTLE 137 (405)
Q Consensus 118 D~~sLS~TDIkVIALAyeLe 137 (405)
+...++.+|..+||+|+.+.
T Consensus 79 ~~~~~~~~D~~il~~a~~~~ 98 (111)
T smart00670 79 LKLELLPNDALILATAKELG 98 (111)
T ss_pred hhhcCCCChHHHHHHHHHCC
Confidence 77779999999999999984
No 5
>PRK04358 hypothetical protein; Provisional
Probab=97.49 E-value=8.1e-05 Score=71.25 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=23.7
Q ss_pred HHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218 113 ARATGDLQTLSDVDLKLIALTCTLETQMHG 142 (405)
Q Consensus 113 AKKTGD~~sLS~TDIkVIALAyeLe~E~~G 142 (405)
|-++| ..+|.+||+|||||++|.+....
T Consensus 153 Alr~G--~ldS~~DidvlaLA~ELda~lvT 180 (217)
T PRK04358 153 ALRKG--ILDSAEDLDVLLLAKELDAAVVS 180 (217)
T ss_pred HHHcC--cccchhhHHHHHHHHHhCCEEEe
Confidence 45678 48999999999999999887654
No 6
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=97.28 E-value=0.00016 Score=68.84 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.4
Q ss_pred CCChHHHHHHHhhhhcceeecc
Q 045218 121 TLSDVDLKLIALTCTLETQMHG 142 (405)
Q Consensus 121 sLS~TDIkVIALAyeLe~E~~G 142 (405)
-+|.+||+|||||++|.+..+.
T Consensus 155 LdS~~DidvlaLA~ELda~lvT 176 (206)
T TIGR03875 155 LDSAEDLDVLLLAKELDAAVVS 176 (206)
T ss_pred cCchhhHHHHHHHHHcCcEEEe
Confidence 5899999999999999887654
No 7
>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains. Members of the UPF0278 family are uncharacterised and about 200 amino acids in length.; PDB: 2LCQ_A.
Probab=97.09 E-value=0.00023 Score=67.77 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=15.1
Q ss_pred HHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218 114 RATGDLQTLSDVDLKLIALTCTLETQMHG 142 (405)
Q Consensus 114 KKTGD~~sLS~TDIkVIALAyeLe~E~~G 142 (405)
-++|. -+|.+|++||+|||+|.+..+.
T Consensus 147 lr~G~--ldS~~D~dvl~LA~El~a~lvt 173 (205)
T PF08745_consen 147 LRKGI--LDSREDIDVLLLALELDAVLVT 173 (205)
T ss_dssp ----------HHHHHHHHHHHHHT--EE-
T ss_pred ccccc--CCChHhHHHHHHHHHcCCEEEe
Confidence 34454 3499999999999999997654
No 8
>PF14367 DUF4411: Domain of unknown function (DUF4411)
Probab=95.40 E-value=0.042 Score=49.40 Aligned_cols=129 Identities=15% Similarity=0.042 Sum_probs=74.6
Q ss_pred EEEechhhhcC---CCCcc------------cccCcceehhhHhhhcC--CHHHHhhhhcCCC-CcEEeCCChhHHHH--
Q 045218 49 AVVDANAIIQG---AHNLT------------NFADKFVTVPEVLAEIR--DPVSRNRLNFIPF-SIDSMEPSPDSLNK-- 108 (405)
Q Consensus 49 lVLDTsAFIkg---~~~L~------------~~a~kiYTtPeVI~EIR--Dk~SR~rLe~Lp~-~LkIrEPs~EsIkk-- 108 (405)
|+||||+||.. +.+.+ ...+.++++.+|.+||. +..-...+..+.. ...+..++...+..
T Consensus 1 YllDtN~~I~a~~~yY~~d~~p~fW~~L~~~~~~g~i~~~~~V~~El~~~~d~l~~W~k~~~~~~~~~~~~d~~~~~~~~ 80 (162)
T PF14367_consen 1 YLLDTNVFIQAWNRYYPFDIFPSFWDWLEQLIESGRIISPDEVYDELERGDDELAKWAKNNEPKFFFFSTDDEAIQAEYA 80 (162)
T ss_pred CccchHHHHHHHHhcCCchHHHHHHHHHHHHHhCCeEeehHHHHHHHhhCChhHHHHHHhCCccccccCCChHHHHHHHH
Confidence 68999999943 23322 11458999999999999 3344455555543 24455555445444
Q ss_pred -HHHHH-HHhCCC------CCCChHHHHHHHhhhhcceeecccccccCCCCCcccccccCCCCCCCCCCCCcCCChHHHH
Q 045218 109 -VIKFA-RATGDL------QTLSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWE 180 (405)
Q Consensus 109 -V~eFA-KKTGD~------~sLS~TDIkVIALAyeLe~E~~Gt~hLR~eP~~~~~v~~k~~~ek~lpG~gfn~P~~~eWe 180 (405)
|..++ ...+-| .-|+..|--|||.|+......+..+.. .|...+ .+..=+-.+-.|+||-.+-.+
T Consensus 81 ~v~~~~~~~~~~~~~~a~~~f~~~ADp~LIA~A~~~~~~VVT~E~~--~~~~~~-----~~~KIPdvC~~~gV~ci~~~~ 153 (162)
T PF14367_consen 81 EVLNWVIINSQQYKKGAKDEFLSVADPWLIAYAKAYGATVVTHEVS--NPNKKK-----KKIKIPDVCEHFGVPCINLFE 153 (162)
T ss_pred HHHHHHhhcchhhchhHHhhhcccCCHHHHHHHHhcCCEEEccCCC--CCCCCc-----cCCCCChhHHhCCCcCCCHHH
Confidence 44443 222222 225999999999999988766654433 111111 011113334456688777766
Q ss_pred Hhhh
Q 045218 181 ALDN 184 (405)
Q Consensus 181 ~ld~ 184 (405)
-|.+
T Consensus 154 ~lr~ 157 (162)
T PF14367_consen 154 FLRE 157 (162)
T ss_pred HHHH
Confidence 6644
No 9
>PF01850 PIN: PIN domain; InterPro: IPR002716 The PilT protein, N-terminal domain (PIN) is a compact domain of about 100 amino acids. The domain has two nearly invariant aspartates and forms a coiled-coil with other monomer units to polymerise a pilus fibre []. The function of the PIN domain is unknown but a role in signalling appears likely given the presence of this domain in some bacterial plasmid stability proteins and Dis3 from yeast that is implicated in mitotic control [].; PDB: 3TND_G 2H1O_B 2BSQ_B 2H1C_A 2FE1_A 3ZVK_C 1V8P_F 1V8O_C 3H87_A 1O4W_A ....
Probab=91.03 E-value=0.3 Score=38.79 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=64.0
Q ss_pred EEEechhhhcCC--CCcc-------cccCcceehhhHhhhcCCHHHH--------hh--hhcCCCCcEEeCCChhHHHHH
Q 045218 49 AVVDANAIIQGA--HNLT-------NFADKFVTVPEVLAEIRDPVSR--------NR--LNFIPFSIDSMEPSPDSLNKV 109 (405)
Q Consensus 49 lVLDTsAFIkg~--~~L~-------~~a~kiYTtPeVI~EIRDk~SR--------~r--Le~Lp~~LkIrEPs~EsIkkV 109 (405)
++||||++|.-. .+.. .....+|+++-|+.|+--.-.+ .. +..+...+.+...+.+....+
T Consensus 1 i~lDTsili~~~~~~~~~~~~~~~~~~~~~~~is~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (121)
T PF01850_consen 1 ILLDTSILIALLRDEENHEKARELLERAIEIVISSLVLAELLYVLRRRSKQQKAIALLELLILLSNFNILPITSEVFERA 80 (121)
T ss_dssp EEE-HHHHHHHHSHSCHHHHHHHHHHTHSEEEEEHHHHHHHHHHHHHSHCHHHHHHHHHHHHHHCTSEEEEBCHHHHHHH
T ss_pred EEEcChhhccccCCChhHHHHHHHHhcCCCEEEcHHHHHHHHHHhhhccccchhhhHHHHHHHHhhhccccchhHHHHHH
Confidence 689999999521 1110 1116889999999999765544 11 111234588888999999999
Q ss_pred HHHHHHhCCCCCCChHHHHHHHhhhhcceeec
Q 045218 110 IKFARATGDLQTLSDVDLKLIALTCTLETQMH 141 (405)
Q Consensus 110 ~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~ 141 (405)
.++..+.| ++..|.-++|+|........
T Consensus 81 ~~~~~~~~----~~~~Da~~~a~A~~~~~~~v 108 (121)
T PF01850_consen 81 AELMRKYG----LDFADALIAATAKENGAPLV 108 (121)
T ss_dssp HHHHHHHH----SSHHHHHHHHHHHHHT-EEE
T ss_pred HHHHHhcc----CChhHHHHHHHHHHcCCEEE
Confidence 99999988 99999999999999887654
No 10
>TIGR00028 Mtu_PIN_fam Mycobacterium tuberculosis PIN domain family. Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see Pfam pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis. Two more are now found in Synechococcus sp. WH8102. The specific function is unknown but may be in signal transduction.
Probab=88.30 E-value=1 Score=37.26 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=57.7
Q ss_pred EEEechhhhcCC---CC--------cccc--cCcceehhhHhhhcCC--------------HHHHhhhhcCC--CCcEEe
Q 045218 49 AVVDANAIIQGA---HN--------LTNF--ADKFVTVPEVLAEIRD--------------PVSRNRLNFIP--FSIDSM 99 (405)
Q Consensus 49 lVLDTsAFIkg~---~~--------L~~~--a~kiYTtPeVI~EIRD--------------k~SR~rLe~Lp--~~LkIr 99 (405)
++||||.||... .+ +... ...+++++.|+.|+.- ...+..|..+. ..+.+.
T Consensus 2 i~lDTnvli~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vl~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (142)
T TIGR00028 2 LLLDVNVLLAAVNRDHPHHDAARAWLDRFAAGGDWATCPLTLAGFVRLLTNPRVLPAPLSPAEAIAVVAAFLATPRHRLL 81 (142)
T ss_pred ccchhhHHHHhcCCCCcchHHHHHHHHHHhcCCCceechhhhhhheeeeccCCcCCCCCCHHHHHHHHHHHHhCCCeeec
Confidence 789999999641 11 1111 1357888899999732 22233344332 235555
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc-ccccc
Q 045218 100 EPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG-TKHLR 147 (405)
Q Consensus 100 EPs~EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G-t~hLR 147 (405)
.|.+........+++.-|+ ...+..|.-++|+|.+....... ..+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~~~~D~~i~a~A~~~~~~lvT~D~~f~ 129 (142)
T TIGR00028 82 WPGPRHLAVLRGLADPVIA-GGRLVTDAHLAALAREHGAELVTFDRGFA 129 (142)
T ss_pred CCCcchHHHHHHHHHHhcc-CCCCchHHHHHHHHHHcCCEEEecCCCcc
Confidence 5655444444445555443 34678999999999999865543 23444
No 11
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=86.47 E-value=0.49 Score=42.02 Aligned_cols=87 Identities=21% Similarity=0.212 Sum_probs=56.2
Q ss_pred EEechhhhcCC-----CC---cccccCcceehhhHhhhcCCHHHHhh-------------hhcCCCCcEEeCCChhHHHH
Q 045218 50 VVDANAIIQGA-----HN---LTNFADKFVTVPEVLAEIRDPVSRNR-------------LNFIPFSIDSMEPSPDSLNK 108 (405)
Q Consensus 50 VLDTsAFIkg~-----~~---L~~~a~kiYTtPeVI~EIRDk~SR~r-------------Le~Lp~~LkIrEPs~EsIkk 108 (405)
|||||.||+.- .. +..-...+||+..++.||+....+.. |..|...|+|.. ...+-..
T Consensus 1 VvDaNIl~Sall~~~~~~~~~~~~~~~~f~~p~~~~~Ei~kh~~~I~~k~~l~~~~~~~~l~~l~~~I~iv~-~~~~~~~ 79 (133)
T PF10130_consen 1 VVDANILFSALLGKRSRTRILLVEPRIEFFAPDYALEEIEKHLPKIAKKSKLSEEELEEVLNILFSRIKIVP-EEIYSEN 79 (133)
T ss_pred CccHHHHHHHHHccCcceeeeecccchheeccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhheEEec-HHHhHHH
Confidence 68888777531 00 11112488999999999986443221 222333456654 4444477
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHhhhhcceee
Q 045218 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQM 140 (405)
Q Consensus 109 V~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~ 140 (405)
..++.+..+|. -.-|+-.+|||+.|.+..
T Consensus 80 ~~~A~~~~~~~---D~~D~p~vALaL~l~~~I 108 (133)
T PF10130_consen 80 IEEAREIIRDR---DPDDWPFVALALQLNAPI 108 (133)
T ss_pred HHHHHHHhcCC---CcchHHHHHHHHHcCCCe
Confidence 77777777764 678999999999998753
No 12
>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J.
Probab=77.43 E-value=0.46 Score=39.79 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=22.8
Q ss_pred EEEechhhhcCCCCcccc-cCcceehhhHhhhcCC
Q 045218 49 AVVDANAIIQGAHNLTNF-ADKFVTVPEVLAEIRD 82 (405)
Q Consensus 49 lVLDTsAFIkg~~~L~~~-a~kiYTtPeVI~EIRD 82 (405)
||+|||+||.....+..+ ...++-+.-|++||..
T Consensus 1 ~V~DTnvll~~~~~l~~~~~~~ivIP~~Vl~ELd~ 35 (133)
T PF13638_consen 1 YVLDTNVLLHHPDLLEKLEQNKIVIPLTVLEELDR 35 (133)
T ss_dssp EEE-HHHHHHHHHHHHHHSSSEEEEEHHHHHHHHH
T ss_pred CEeehhHHhCChHHHhccccCEEEechHHHHHHHH
Confidence 799999999872123322 2367777789999954
No 13
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=76.89 E-value=2.1 Score=39.80 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=59.1
Q ss_pred EEEechhhhcCCCCc------ccccCcceehhhHhhhcCCHHHHhhhhcCCCCcEEeCCChhHHHHHHHHHHHhCCCCCC
Q 045218 49 AVVDANAIIQGAHNL------TNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTL 122 (405)
Q Consensus 49 lVLDTsAFIkg~~~L------~~~a~kiYTtPeVI~EIRDk~SR~rLe~Lp~~LkIrEPs~EsIkkV~eFAKKTGD~~sL 122 (405)
+|.||+++++- +.+ +.+.++++++..|.+|+-.-..+..+-.++.-++|..+.+..+- .- -+. .|
T Consensus 2 vvsdts~i~nl-a~ig~i~ll~~~ye~viip~~v~~E~~~~~~s~~~~~~l~~iei~~~~n~~lv--~~-lre-----~L 72 (157)
T COG2405 2 VVSDTSPIINL-ANIGEIDLLHALYEKVIIPEQVAEEFEFGVNSGVLPALLGWIEILRLKNRDLV--NL-LRE-----KL 72 (157)
T ss_pred eeecchhHHHH-HhcchhhHHHHHhhcccCCchHHHHHHHhhcccccccccCceEEeccCcHHHH--HH-HHH-----hc
Confidence 68899999875 333 33446889999999999987777766667778999999887432 22 221 24
Q ss_pred ChHHHHHHHhhhhcce
Q 045218 123 SDVDLKLIALTCTLET 138 (405)
Q Consensus 123 S~TDIkVIALAyeLe~ 138 (405)
-+-.-+.||||+++.+
T Consensus 73 d~GEa~aIALA~e~~a 88 (157)
T COG2405 73 DKGEAEAIALALELKA 88 (157)
T ss_pred ccchHHHHHHHHHcCC
Confidence 4556789999999998
No 14
>PRK13764 ATPase; Provisional
Probab=63.33 E-value=6.5 Score=43.04 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=51.7
Q ss_pred EEEEechhhhcCC-CCc---cc-ccCcceehhhHhhhcCCHHH---------HhhhhcC---C----CCcEEeCCCh---
Q 045218 48 VAVVDANAIIQGA-HNL---TN-FADKFVTVPEVLAEIRDPVS---------RNRLNFI---P----FSIDSMEPSP--- 103 (405)
Q Consensus 48 ~lVLDTsAFIkg~-~~L---~~-~a~kiYTtPeVI~EIRDk~S---------R~rLe~L---p----~~LkIrEPs~--- 103 (405)
.||+|||++|.|- ..+ .. ....++-+..|++|+-.... +..|..| . ..|++....+
T Consensus 2 ~yVlDTSVIIDGri~~~i~~g~~~~~~IiIP~~Vl~ELe~~A~~~r~~G~~gLeeL~~L~~l~~~g~i~ie~~~~~p~~~ 81 (602)
T PRK13764 2 KIVPDTSVVIDGRVSELIEKGEYIGGTIIIPEAVVAELEAQANQGREIGFSGLEELKKLRELAEEGLIELEFVGERPTLE 81 (602)
T ss_pred eEEccceEEEechHHHHHHcCCccCCEEEeehHHHHHHHHHhhccchhhHHHHHHHHHHHHhhccCceEEEEeccccchh
Confidence 6899999999882 011 11 24678889999999965322 2222222 1 1233332222
Q ss_pred --------hHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceee
Q 045218 104 --------DSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQM 140 (405)
Q Consensus 104 --------EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~ 140 (405)
+.-.++.++|++.|=.-.-++.=+...|.+.-+...+
T Consensus 82 ~~~~~~~gevD~~I~~~A~~~~~~lvT~D~~l~~~A~~~GI~V~~ 126 (602)
T PRK13764 82 QIKLAKGGEIDALIREVAKELGATLVTSDRVQAEVARAKGIDVIY 126 (602)
T ss_pred hcccccCCCHHHHHHHHHHHcCCEEEeCCHHHHHHHHHcCCEEEE
Confidence 2224666777766544444555566666666666554
No 15
>COG4374 PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) [Signal transduction]
Probab=61.23 E-value=12 Score=33.92 Aligned_cols=93 Identities=17% Similarity=0.108 Sum_probs=62.7
Q ss_pred ceEEEEechhhhcC------C------CCcccccCcceehhhHhhhcCC-HHHHhhhhc-CCC--CcEEeCCChhHHHHH
Q 045218 46 IAVAVVDANAIIQG------A------HNLTNFADKFVTVPEVLAEIRD-PVSRNRLNF-IPF--SIDSMEPSPDSLNKV 109 (405)
Q Consensus 46 ik~lVLDTsAFIkg------~------~~L~~~a~kiYTtPeVI~EIRD-k~SR~rLe~-Lp~--~LkIrEPs~EsIkkV 109 (405)
|.++|||++|++.- + .|.+ --.-++.-||+.++-| .-+-++.+. +.. .+.-.-|...+..+=
T Consensus 2 mnk~~lDaSAlLA~~~~E~G~~~V~~~lp~~--~iSsVnlaEV~~k~ld~~l~p~~I~a~~~~~ls~~~~v~fd~d~a~~ 79 (130)
T COG4374 2 MNKMLLDASALLAFLLKEEGGLEVLKVLPSQ--WISSVNLAEVQGKLLDGALTPRQIEAQLGPLLSFVREVPFDSDCAKK 79 (130)
T ss_pred cceeehhHHHHHHHHHHHhcchhHHhhcchh--hhhheeHHHHHHHHhccCCCHHHHHHhhccceeeeeeccccHHHHHH
Confidence 56789999998852 1 1222 1244788999999544 344444442 221 233344677777777
Q ss_pred HHHHHHhCCCCCCChHHHHHHHhhhhcceee
Q 045218 110 IKFARATGDLQTLSDVDLKLIALTCTLETQM 140 (405)
Q Consensus 110 ~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~ 140 (405)
..|-+|+-.-.-||--|--+|+||..+....
T Consensus 80 a~~l~k~ts~~GLSLGDrACl~la~~~k~pv 110 (130)
T COG4374 80 ASFLYKRTSPYGLSLGDRACLGLAEALKLPV 110 (130)
T ss_pred HHHHHhcccccCcCcchHHHHHHHHHhCCce
Confidence 7788888777889999999999999887654
No 16
>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=54.17 E-value=20 Score=33.18 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=47.3
Q ss_pred EEEEechhhhcCCCCccccc-----------CcceehhhHhhhcCCHHHHhhhhc-CCC--------------CcEEeCC
Q 045218 48 VAVVDANAIIQGAHNLTNFA-----------DKFVTVPEVLAEIRDPVSRNRLNF-IPF--------------SIDSMEP 101 (405)
Q Consensus 48 ~lVLDTsAFIkg~~~L~~~a-----------~kiYTtPeVI~EIRDk~SR~rLe~-Lp~--------------~LkIrEP 101 (405)
.+|+|||.+|.+-..-.+++ -..||-++.++|+.-.-++-.|.- +|. .+..-.|
T Consensus 2 kVViDTNV~isaLi~p~Gl~~~l~~ll~~~~i~n~tS~eil~El~~v~~~pKl~k~l~~e~~~~~v~~l~~~~~~i~I~p 81 (142)
T COG1569 2 KVVIDTNVWISALISPGGLPGELISLLIKEKIENYTSEEILDELEEVLSYPKLKKYLPLEVLGELVLVLFESVSLIAINP 81 (142)
T ss_pred eEEEEhhHHHHHHhCCCCCcHHHHHHHhhCceEEEecHHHHHHHHHHHhhHHHHhhcchHHHHHHHHHHHHhheeEeecc
Confidence 57999999987421111111 157999999999976555555543 221 1111334
Q ss_pred ChhHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhccee
Q 045218 102 SPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQ 139 (405)
Q Consensus 102 s~EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E 139 (405)
... ... .=-.-|.++||+||+=.+.
T Consensus 82 ~~~-f~~------------~RDp~Dn~~L~~A~~~kA~ 106 (142)
T COG1569 82 LEK-FNI------------CRDPKDNKLLALAYESKAD 106 (142)
T ss_pred ccc-ccc------------cCCchHHHHHHHHHhccCC
Confidence 433 111 1126799999999999885
No 17
>COG5378 Predicted nucleotide-binding protein [General function prediction only]
Probab=42.90 E-value=11 Score=35.40 Aligned_cols=88 Identities=19% Similarity=0.237 Sum_probs=59.9
Q ss_pred EEEEechhhhcC-------C-CC--cccccCcceehhhHhhhcCCHHHHh-------------hhhcCCCCcEEeCCChh
Q 045218 48 VAVVDANAIIQG-------A-HN--LTNFADKFVTVPEVLAEIRDPVSRN-------------RLNFIPFSIDSMEPSPD 104 (405)
Q Consensus 48 ~lVLDTsAFIkg-------~-~~--L~~~a~kiYTtPeVI~EIRDk~SR~-------------rLe~Lp~~LkIrEPs~E 104 (405)
.+||||+-++.. + .+ +....-++|.+..|++|+|....+. .+..+...++| -|...
T Consensus 16 ~lvvdtniifs~v~s~~~~~~~~~i~~~~~ieLyaP~~il~El~eh~~k~~kka~V~e~~f~~ia~l~lsnVkI-ipke~ 94 (175)
T COG5378 16 KLVVDTNIIFSQVLSYVTKGELPWILDFINIELYAPQLILDELKEHIEKKCKKANVDESKFIKIANLILSNVKI-IPKEK 94 (175)
T ss_pred EEEEeccchHHHHHhhhhccccceeecccccceechHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHhcee-cchhh
Confidence 789999988752 0 11 1111238899999999998643321 11111123555 48888
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHhhhhccee
Q 045218 105 SLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQ 139 (405)
Q Consensus 105 sIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E 139 (405)
+..+.+++-+-.| ..-.-|+=-+|||+.|++-
T Consensus 95 y~dk~~eAy~iig---~~D~kD~PfvaLaLkl~a~ 126 (175)
T COG5378 95 YNDKSKEAYNIIG---HRDVKDIPFVALALKLDAH 126 (175)
T ss_pred hhhHHHHHHHHhc---cCCCCcCceeeeeeeccCC
Confidence 9999998888888 4567889999999999875
No 18
>COG1487 VapC Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=37.60 E-value=59 Score=27.62 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=59.6
Q ss_pred eEEEEechhhhcCCC--Cc----cccc-CcceehhhHhhhcCCHHHH--------hhhhcCCCCcEEeCCChhHH---HH
Q 045218 47 AVAVVDANAIIQGAH--NL----TNFA-DKFVTVPEVLAEIRDPVSR--------NRLNFIPFSIDSMEPSPDSL---NK 108 (405)
Q Consensus 47 k~lVLDTsAFIkg~~--~L----~~~a-~kiYTtPeVI~EIRDk~SR--------~rLe~Lp~~LkIrEPs~EsI---kk 108 (405)
.+++||||.+|.-.. +- ..+. ..+|++.=|+.|+.--..+ ..+..+.+.+.+-..+.... ..
T Consensus 2 ~~~llDTnv~i~l~~~~~~~~~~~~~~~~~~~~s~it~~El~~g~~~~~~~~~~~~~~~~~~~~~~il~~~~~~a~~~~~ 81 (133)
T COG1487 2 MMYLLDTSVIIALLRGEPKELLELRLAEFEIYLSSITVAELLLGALKEAKREDNLEEIEVLLEAFRILPFDDDAAEIAAE 81 (133)
T ss_pred CceeeeHHHHHHHHhcCChHHHHHHHhcCCeeecHHHHHHHHHHHHHhccHHHhHHHHHHHHhcCceecCCHHHHHHHHH
Confidence 478999999997200 00 1112 4688888899998754333 12233344456665555553 56
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHhhhhcceee
Q 045218 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQM 140 (405)
Q Consensus 109 V~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~ 140 (405)
+..-.++.|- ..+..|+-+-|.|+......
T Consensus 82 i~~~l~~~G~--~~~~~D~lIAa~A~~~~~~L 111 (133)
T COG1487 82 IQARLRKEGI--PIGLNDLLIAATAIAHGLLL 111 (133)
T ss_pred HHHHHHhcCC--CCChHHHHHHHHHHHcCCEE
Confidence 6677788885 88999999988888766543
No 19
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=37.03 E-value=14 Score=36.22 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred ceEEEEechhhhcCC--CCcc--------------------cccCcceehhhHhhhcCCHHHHh
Q 045218 46 IAVAVVDANAIIQGA--HNLT--------------------NFADKFVTVPEVLAEIRDPVSRN 87 (405)
Q Consensus 46 ik~lVLDTsAFIkg~--~~L~--------------------~~a~kiYTtPeVI~EIRDk~SR~ 87 (405)
++.+||||+||-..+ .-+. .++-.||.+|.|..|++..-.|.
T Consensus 3 ~qrFVLDTtafTd~~~r~~lG~~sl~ea~~~~ldlia~ar~~~~iscyiPPsVY~El~~fm~r~ 66 (221)
T COG1458 3 KQRFVLDTTAFTDPQVREKLGYESLCEAMKTFLDLIARARLKLGISCYIPPSVYRELMGFMERN 66 (221)
T ss_pred ceEEEeecccccCHHHHHHhccccHHHHHHHHHHHHHHhhhhcCeEEEeChHHHHHHHHHHHhC
No 20
>COG4113 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=36.49 E-value=54 Score=29.56 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=55.7
Q ss_pred ceEEEEechhhhcCCCCccc--------ccCcceehhhHhhhcC-------------CHHHHhhhhcCC-CCcEEeCCCh
Q 045218 46 IAVAVVDANAIIQGAHNLTN--------FADKFVTVPEVLAEIR-------------DPVSRNRLNFIP-FSIDSMEPSP 103 (405)
Q Consensus 46 ik~lVLDTsAFIkg~~~L~~--------~a~kiYTtPeVI~EIR-------------Dk~SR~rLe~Lp-~~LkIrEPs~ 103 (405)
+.++|+||||+++-..+-.. ....+.++--++.|+= +..++..+..+. +.+.+-.|+.
T Consensus 1 ~~~~vvDaSa~i~~~v~e~~~~~~~~~~~~~~~~~~~l~~~Ev~~~~~k~~~~~~l~~~~~~~~~~~l~~l~v~~~~~~~ 80 (134)
T COG4113 1 MEMIVVDASALVKLLVREENSDAVALRLKAEELHAPDLAIGEVANALWKLVVRVELSVEEALAALKLLRRLAVTRVPLSE 80 (134)
T ss_pred CcEEEeeHHHHHHHHhccccchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCceecCCcH
Confidence 35799999999975222111 0112233323333332 222222233332 4577777777
Q ss_pred hHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218 104 DSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG 142 (405)
Q Consensus 104 EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G 142 (405)
+.++...+.+.+ ..|.-.|-.-||||-.+..+...
T Consensus 81 ~ll~~A~~i~~~----~~lt~YDA~yialAe~~g~~l~T 115 (134)
T COG4113 81 ELLERAWEIALK----YSLTVYDALYIALAERLGLELVT 115 (134)
T ss_pred HHHHHHHHHHHh----cCccHHHHHHHHHHHHcCCeEEe
Confidence 767766666655 48999999999999999987654
No 21
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=33.99 E-value=56 Score=27.09 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=22.4
Q ss_pred EEEechhhhcCCC--C----cccc----cCcceehhhHhhhcCC
Q 045218 49 AVVDANAIIQGAH--N----LTNF----ADKFVTVPEVLAEIRD 82 (405)
Q Consensus 49 lVLDTsAFIkg~~--~----L~~~----a~kiYTtPeVI~EIRD 82 (405)
+|||||.||.... . +-.+ .-.+|.++.++.|++.
T Consensus 2 vvlDTNVli~all~~~~~~~l~~~~~~~~~~~~~s~~~l~E~~~ 45 (114)
T TIGR00305 2 VVIDTNVWISALIWKGLPGKLIKLIIDNKIVNCTSVEILQEVEF 45 (114)
T ss_pred EEEEhHHHHHHHhCCCCHHHHHHHHHhCCEEEEECHHHHHHHHH
Confidence 6999999886411 0 1001 1377899999999953
No 22
>PRK13725 plasmid maintenance protein; Provisional
Probab=32.74 E-value=81 Score=27.35 Aligned_cols=92 Identities=8% Similarity=0.018 Sum_probs=52.1
Q ss_pred EEEEechhhhcC--CCC------cccccCcceehhhHhhhcCC--------HHHHhhhhcCCCCcEEeCCChhHHH---H
Q 045218 48 VAVVDANAIIQG--AHN------LTNFADKFVTVPEVLAEIRD--------PVSRNRLNFIPFSIDSMEPSPDSLN---K 108 (405)
Q Consensus 48 ~lVLDTsAFIkg--~~~------L~~~a~kiYTtPeVI~EIRD--------k~SR~rLe~Lp~~LkIrEPs~EsIk---k 108 (405)
.|+|||+.+|.- +.+ +......+|+..=++.||+- ++.+..+..+...+.|-..+.+... .
T Consensus 3 ~yLLDTni~i~~~~~~~~~v~~~~~~~~~~~~iS~It~~EL~~G~~~~~~~~~~~~~~~~~l~~~~ilp~d~~~a~~~a~ 82 (132)
T PRK13725 3 KFMLDTNICIFTIKNKPEHVRERFNLNTGRMCISSVTLMELIYGAEKSQMPERNLAVIEGFVSRLEVLDYDTAAATHTGQ 82 (132)
T ss_pred chhhhHHHHHHHHhCCcHHHHHHHhCCCcceeehHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCccCCCCHHHHHHHHH
Confidence 489999988742 111 11112457777778888853 2222334333223445544444333 3
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHhhhhcceeec
Q 045218 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMH 141 (405)
Q Consensus 109 V~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~ 141 (405)
+..-.++.|. .++..|.-+.|.|+.-.....
T Consensus 83 i~~~l~~~g~--~i~~~D~lIAA~Al~~~~~Lv 113 (132)
T PRK13725 83 IRAELARQGR--PVGPFDQMIAGHARSRGLIVV 113 (132)
T ss_pred HHHHHHHcCC--CCChhHHHHHHHHHHCCCEEE
Confidence 4444566675 568889888888887666543
No 23
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=28.59 E-value=28 Score=37.11 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=51.9
Q ss_pred eEEEEechhhhcCCCCcccccC-cceehhhHhhhcCC---------HHHHhhhhc---C-----------C-----CCcE
Q 045218 47 AVAVVDANAIIQGAHNLTNFAD-KFVTVPEVLAEIRD---------PVSRNRLNF---I-----------P-----FSID 97 (405)
Q Consensus 47 k~lVLDTsAFIkg~~~L~~~a~-kiYTtPeVI~EIRD---------k~SR~rLe~---L-----------p-----~~Lk 97 (405)
+.||||||.||+.-..|-.|.+ .+|.+--|++|+-. ..+|+.+.. | | ..+.
T Consensus 3 ktyVLDTnVLi~DP~Alf~F~eh~VvIP~~VlEELd~~Kr~~~evgrnAR~a~r~ld~L~~~~~~l~~giPl~~~G~~l~ 82 (436)
T COG1875 3 KTYVLDTNVLIHDPTALFRFEEHDVVIPMVVIEELDATKRGHSEIGRNARQASRLLDELRNEHGRLKAGIPLGNKGGTLH 82 (436)
T ss_pred eEEEEecceeeeCcHHHhcccccceEeeehHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhcCCccCCcccCCCCCeEE
Confidence 6899999999987434445554 56666678999864 223333322 1 1 1133
Q ss_pred EeCCChhHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218 98 SMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG 142 (405)
Q Consensus 98 IrEPs~EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G 142 (405)
|.--..+..+...-|..+++ |-.+||++..|..+..|
T Consensus 83 iel~~~~~~~~~~~~~~~~~--------DnrIL~~~~~L~~~~~~ 119 (436)
T COG1875 83 VELNHQNSTKLPNGFREGVN--------DNRILAVVLNLQEEEPG 119 (436)
T ss_pred EEEeccCccccccccccccc--------hHHHHHHHHHHHhcCCC
Confidence 32212233344444555555 57899999999887654
No 24
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=27.60 E-value=45 Score=34.77 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=51.3
Q ss_pred EEEEechhhhcCC----CCcccccCcceehhhHhhhcC----------CHHHHhhhhcC-------CCCcEEeCCChhHH
Q 045218 48 VAVVDANAIIQGA----HNLTNFADKFVTVPEVLAEIR----------DPVSRNRLNFI-------PFSIDSMEPSPDSL 106 (405)
Q Consensus 48 ~lVLDTsAFIkg~----~~L~~~a~kiYTtPeVI~EIR----------Dk~SR~rLe~L-------p~~LkIrEPs~EsI 106 (405)
..|||||++|-|- +.-.-+.+.++.+.-|+.|+. -.+.|+-|+.| |-.++|.
T Consensus 162 ~KILDTSvIIDGRI~di~~TGFleG~iiiP~FVL~ELQ~iADssD~lKR~RGRRGLdILn~iqk~~~~~v~I~------- 234 (356)
T COG4956 162 PKILDTSVIIDGRIADILQTGFLEGTIIIPQFVLLELQHIADSSDDLKRNRGRRGLDILNEIQKEDPIQVEIY------- 234 (356)
T ss_pred CeEeeeceEEcchHHHHHHhCCccceEeeeHHHHHHHHHHhhccchhhhhcccchhHHHHHHHhhCCCcEEEc-------
Confidence 5699999999762 111122357888888999985 23344445543 3334443
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218 107 NKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG 142 (405)
Q Consensus 107 kkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G 142 (405)
-|||+.+-.+|-+++=||-+.......
T Consensus 235 ---------~~Df~di~eVD~KLvklAk~~~g~lvT 261 (356)
T COG4956 235 ---------EGDFEDIPEVDSKLVKLAKVTGGKLVT 261 (356)
T ss_pred ---------cCCccchhhHHHHHHHHHHHhCCEEEe
Confidence 367778888888888888777665443
No 25
>COG1848 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=25.96 E-value=84 Score=26.68 Aligned_cols=86 Identities=23% Similarity=0.296 Sum_probs=48.5
Q ss_pred EEEEechhhhcCC--C-C--------cccc---cCcceehhhHhhhcCCHHHHhh-----------hh---cCC-CC--c
Q 045218 48 VAVVDANAIIQGA--H-N--------LTNF---ADKFVTVPEVLAEIRDPVSRNR-----------LN---FIP-FS--I 96 (405)
Q Consensus 48 ~lVLDTsAFIkg~--~-~--------L~~~---a~kiYTtPeVI~EIRDk~SR~r-----------Le---~Lp-~~--L 96 (405)
++++|||.||.-. . + +... ....|+++-|+.|+--...|.. +. ..+ +. +
T Consensus 1 ~i~~Dtnvlv~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (140)
T COG1848 1 MIVIDTNVLVYALFRDHPHHDRARELLERLEAGDIRVYTPELVLAELLRVLTRRRRPLSLAEAIEVVAALLALPRFELLL 80 (140)
T ss_pred CeeeehHHHHHHHHccChhHHHHHHHHHHHhcCCCceeecHHHHHHHHHHHhhcccCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999631 1 1 1111 1368999999999865555421 11 001 11 2
Q ss_pred EEeCCChhHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcc
Q 045218 97 DSMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLE 137 (405)
Q Consensus 97 kIrEPs~EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe 137 (405)
.+-+-..+....+.... ....|...|--++|+|....
T Consensus 81 ~~~~~~~~~~~~a~~~~----~~~~l~~~DAl~lA~a~~~g 117 (140)
T COG1848 81 DILEVTAEAYRLAAALA----LKYGLLPNDALLLATAKRYG 117 (140)
T ss_pred hcccchHHHHHHHHHHH----HHcCCCCcHHHHHHHHHHcC
Confidence 22222333333333333 33678899999999998875
No 26
>PF09603 Fib_succ_major: Fibrobacter succinogenes major domain (Fib_succ_major); InterPro: IPR011871 This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes subsp. succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulphide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.
Probab=21.87 E-value=54 Score=28.90 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.6
Q ss_pred CCCcCCChHHHHHhhhhhh
Q 045218 169 WGSNVANLEEWEALDNDNA 187 (405)
Q Consensus 169 ~gfn~P~~~eWe~ld~~~~ 187 (405)
-|+|||..+||..|-....
T Consensus 72 ~GWrlPt~~Ew~~L~~~~~ 90 (184)
T PF09603_consen 72 EGWRLPTRAEWNSLFKYLG 90 (184)
T ss_pred CCCCCCCHHHHHHHHHhhc
Confidence 3446999999999998774
No 27
>PF13470 PIN_3: PIN domain
Probab=20.40 E-value=51 Score=26.90 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=25.0
Q ss_pred EEEechhhhcCCCC----cc---cc----cCcceehhhHhhhcCCHHHH
Q 045218 49 AVVDANAIIQGAHN----LT---NF----ADKFVTVPEVLAEIRDPVSR 86 (405)
Q Consensus 49 lVLDTsAFIkg~~~----L~---~~----a~kiYTtPeVI~EIRDk~SR 86 (405)
+|||||.||..... -. .+ .-.+|++++++.|++..-.|
T Consensus 2 VvlDTNVli~~ll~~~~~~~~l~~~~~~~~~~~~~s~~~l~E~~~vl~r 50 (119)
T PF13470_consen 2 VVLDTNVLISALLSREPAARKLLDLAEDGRIELYISPEILDELERVLSR 50 (119)
T ss_pred EEEEechhHHHHhCCCchHHHHHHHHHcCCCeEEecHHHHHHHHHHHhc
Confidence 69999999975210 00 00 13689999999999854433
No 28
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=20.28 E-value=1.1e+02 Score=27.89 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=27.4
Q ss_pred CCceEEEEechhhhcCC---CCcc-------cccCcceehhhHhhhcCCHH
Q 045218 44 EGIAVAVVDANAIIQGA---HNLT-------NFADKFVTVPEVLAEIRDPV 84 (405)
Q Consensus 44 ~~ik~lVLDTsAFIkg~---~~L~-------~~a~kiYTtPeVI~EIRDk~ 84 (405)
.++-.+|+|||+++.-+ ..+. ....+++.|.-|+.|++-..
T Consensus 8 ~~~~~VlvDTNfl~~~~q~~vdi~~~l~r~l~~~~~~~Ip~~Vi~EL~~l~ 58 (136)
T COG1412 8 RKPYQVLVDTNFLLYPYQFKVDIFEELERLLGAKYKPAIPSCVIRELEKLK 58 (136)
T ss_pred CCceEEEecchHHHHHHHccCCHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 34568899999998531 1111 11247888999999998543
Done!