Query 045218
Match_columns 405
No_of_seqs 164 out of 338
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 19:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lcq_A Putative toxin VAPC6; P 99.6 6.3E-16 2.2E-20 134.5 7.1 92 44-141 8-101 (165)
2 3ix7_A Uncharacterized protein 95.4 0.011 3.9E-07 51.2 4.0 79 47-142 6-103 (134)
3 3i8o_A KH domain-containing pr 95.2 0.022 7.4E-07 50.2 5.3 85 47-142 4-111 (142)
4 2fe1_A Conserved hypothetical 92.7 0.26 8.9E-06 41.4 6.9 93 44-142 23-141 (156)
5 1w8i_A Putative VAPC ribonucle 92.4 0.21 7.1E-06 41.7 5.7 100 48-148 2-126 (156)
6 1v8p_A Hypothetical protein PA 91.2 0.15 5.2E-06 44.1 3.8 93 43-142 23-133 (158)
7 2dok_A Telomerase-binding prot 74.1 0.43 1.5E-05 42.0 -1.2 37 47-83 13-53 (186)
8 2h1c_A Trafficking protein B; 71.1 7.7 0.00026 30.4 5.6 92 49-142 2-120 (139)
9 1v96_A Hypothetical protein PH 69.4 3 0.0001 33.8 3.0 92 48-141 6-113 (149)
10 3tnd_A TRNA(FMet)-specific end 68.9 4.7 0.00016 32.0 4.0 102 47-150 2-124 (132)
11 3zvk_A VAPC2, toxin of toxin-a 61.2 15 0.00051 29.2 5.5 101 48-150 2-125 (134)
12 3h87_A Putative uncharacterize 57.4 52 0.0018 28.2 8.7 94 48-141 20-129 (156)
13 3dbo_B Uncharacterized protein 52.6 55 0.0019 27.6 8.0 96 43-140 17-129 (150)
14 1o4w_A PIN (PILT N-terminus) d 52.4 2.8 9.4E-05 35.1 -0.2 42 43-84 20-69 (147)
15 2hwy_A Protein SMG5; RNA degra 50.4 3 0.0001 37.6 -0.3 88 47-139 3-106 (164)
16 3hz7_A Uncharacterized protein 23.2 83 0.0028 24.7 4.0 34 84-117 17-53 (87)
No 1
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=99.61 E-value=6.3e-16 Score=134.54 Aligned_cols=92 Identities=29% Similarity=0.482 Sum_probs=82.1
Q ss_pred CCceEEEEechhhhcCCCCcccccCcceehhhHhhhcCCHHHHhhhhcCC-C-CcEEeCCChhHHHHHHHHHHHhCCCCC
Q 045218 44 EGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIP-F-SIDSMEPSPDSLNKVIKFARATGDLQT 121 (405)
Q Consensus 44 ~~ik~lVLDTsAFIkg~~~L~~~a~kiYTtPeVI~EIRDk~SR~rLe~Lp-~-~LkIrEPs~EsIkkV~eFAKKTGD~~s 121 (405)
++++++|+|||+||.+ ..+ .+|||+.|++||++.++|..|..+. . .|++++|.++++..|.++++++|||..
T Consensus 8 ~~~~~~VlDTs~lI~~-~~~-----~l~~p~~V~~El~~~~~r~~l~~l~~~~~l~v~~~~~~~i~~v~~~~~~~gd~~~ 81 (165)
T 2lcq_A 8 NLKKTLVLDSSVFIQG-IDI-----EGYTTPSVVEEIKDRESKIFLESLISAGKVKIAEPSKESIDRIIQVAKETGEVNE 81 (165)
T ss_dssp CCCSSCEECHHHHHHT-CCC-----CEEECHHHHTTCCSSHHHHHHHHHHHTTSEEECCCCHHHHHHHHHHHHHHSCSSC
T ss_pred CCCcEEEEcChHHHcC-CCC-----CEEEChhhHHhhcCHHHHHHHHHhhccCCEEEecCCHHHHHHHHHHHHHcCCccc
Confidence 4556789999999998 433 8999999999999999998888763 3 599999999999999999999999999
Q ss_pred CChHHHHHHHhhhhcceeec
Q 045218 122 LSDVDLKLIALTCTLETQMH 141 (405)
Q Consensus 122 LS~TDIkVIALAyeLe~E~~ 141 (405)
||.+|++|||||+++.....
T Consensus 82 Ls~~D~~lIaLA~~l~~~lv 101 (165)
T 2lcq_A 82 LSKADIEVLALAYELKGEIF 101 (165)
T ss_dssp SCHHHHHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHhHHHhCCeEE
Confidence 99999999999999997543
No 2
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=95.38 E-value=0.011 Score=51.24 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=54.6
Q ss_pred eEEEEechhhhcCCC----CcccccCcceehhhHhhhcCCHH----------HHhhhhcCC-----CCcEEeCCChhHHH
Q 045218 47 AVAVVDANAIIQGAH----NLTNFADKFVTVPEVLAEIRDPV----------SRNRLNFIP-----FSIDSMEPSPDSLN 107 (405)
Q Consensus 47 k~lVLDTsAFIkg~~----~L~~~a~kiYTtPeVI~EIRDk~----------SR~rLe~Lp-----~~LkIrEPs~EsIk 107 (405)
..+|+|||++|.|-. .-..+...+|.+.-|++|+.... .|+.|+.|- +.++|.+
T Consensus 6 ~~~vlDTSviIdGri~~~~~~gf~eg~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~~vei~~------- 78 (134)
T 3ix7_A 6 GGKVLDTSVLVDGRVAEVAAVGFLEGPLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAAPLEVLE------- 78 (134)
T ss_dssp SCEEECHHHHHHCHHHHHHTTTCCCSCEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHSCEEEEC-------
T ss_pred CCeEcccceEEecHHHHHHHhccccCceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCEEEeC-------
Confidence 468999999998721 11112358999999999998644 455555431 1234443
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218 108 KVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG 142 (405)
Q Consensus 108 kV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G 142 (405)
|+...+.+|-+|++||.++.+....
T Consensus 79 ----------~~~~~~~vD~~ll~lA~~~~~~lvT 103 (134)
T 3ix7_A 79 ----------TTPKGESVDEKLLFLARDLEAALVT 103 (134)
T ss_dssp ----------CCCSCSSHHHHHHHHHHHTTCEEEE
T ss_pred ----------CCCCcccHHHHHHHHHHHhCCEEEe
Confidence 4667899999999999999876554
No 3
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=95.23 E-value=0.022 Score=50.17 Aligned_cols=85 Identities=13% Similarity=0.239 Sum_probs=51.4
Q ss_pred eEEEEechhhhcCCCC-c--ccc-cC-cceehhhHhhhcCCH------HHHhhhhcC----------CCCcEEeC--CCh
Q 045218 47 AVAVVDANAIIQGAHN-L--TNF-AD-KFVTVPEVLAEIRDP------VSRNRLNFI----------PFSIDSME--PSP 103 (405)
Q Consensus 47 k~lVLDTsAFIkg~~~-L--~~~-a~-kiYTtPeVI~EIRDk------~SR~rLe~L----------p~~LkIrE--Ps~ 103 (405)
++||+|||++|.|-.. + .++ .+ +++.+..|++|+.-. +.|+-|+.| ...|++.. |+.
T Consensus 4 ~~~vlDTSviIdGrI~~~~~~g~leg~~iiIP~~Vl~EL~~~a~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~ 83 (142)
T 3i8o_A 4 KKVCVDTCVVIDGRITELIERGKLKDATIIIPEAVVSELEYQANMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTR 83 (142)
T ss_dssp CEEEECHHHHHTTHHHHHHHTTTTTTCEEEEEHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCH
T ss_pred CEEEeecceEEEcHHHHHHHcCCccCCeEEehHHHHHHHHHHHHccchhhHHHHHHHHHHHHHhhccCceEEEecccCch
Confidence 5899999999988201 0 123 23 588889999998632 333334332 11233332 222
Q ss_pred hHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218 104 DSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG 142 (405)
Q Consensus 104 EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G 142 (405)
+.++ +..-..+|.+|++||.++.+....
T Consensus 84 ~~i~-----------~~~~~~vD~~l~~lA~~~~a~lvT 111 (142)
T 3i8o_A 84 EEIF-----------LAKSGEIDAMIRKVAKETNSILLT 111 (142)
T ss_dssp HHHH-----------SCCSSSHHHHHHHHHHHTTCEEEE
T ss_pred hhhc-----------cccCCcHHHHHHHHHHHhCCEEEc
Confidence 2221 234468999999999999886654
No 4
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=92.75 E-value=0.26 Score=41.43 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=56.9
Q ss_pred CCceEEEEechhhhcCCCC--cc----c---ccCcceehhhHhhhcCCH-------------HHHhhhhc----CCCCcE
Q 045218 44 EGIAVAVVDANAIIQGAHN--LT----N---FADKFVTVPEVLAEIRDP-------------VSRNRLNF----IPFSID 97 (405)
Q Consensus 44 ~~ik~lVLDTsAFIkg~~~--L~----~---~a~kiYTtPeVI~EIRDk-------------~SR~rLe~----Lp~~Lk 97 (405)
.++..+|||||+||.-... .. . -...+++++-++.|+..- ..+..+.. +. .+.
T Consensus 23 ~~~M~ivlDTsvli~~l~~~~~~~~a~~~l~~~~~~~is~~~~~Ev~~vl~r~~~~~~l~~~~~~~~l~~~~~~l~-~l~ 101 (156)
T 2fe1_A 23 QGAMELVVDASAIAALYVPEERSEQAERAVSQAQELHTLDLAAYEVANDLWKHARRGLLREDEASNMLEELWEFFK-ALK 101 (156)
T ss_dssp ---CEEEECHHHHHTTSSSCCCCHHHHHHHHHCSEEEEEHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT-TSE
T ss_pred hccCeEEEEHHHHHHHHhCCCCcHHHHHHHhhccCeehHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-hcc
Confidence 3444689999999976211 10 0 013688999999998531 12222222 21 133
Q ss_pred EeCCChhHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218 98 SMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG 142 (405)
Q Consensus 98 IrEPs~EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G 142 (405)
+. ..++.+..+.+.+++.| |+..|--++|+|..+......
T Consensus 102 i~-~~~~~~~~A~~l~~~~~----l~~~Dal~lA~A~~~~~~LvT 141 (156)
T 2fe1_A 102 VH-SYAEVLKDAFALALKHG----VTVYDAAYVALAEKIGGKLLT 141 (156)
T ss_dssp EE-CGGGTHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCEEEC
T ss_pred cc-cchHHHHHHHHHHHHhC----cCHHHHHHHHHHHHcCCCEEe
Confidence 33 22266677777888766 899999999999998876533
No 5
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=92.36 E-value=0.21 Score=41.72 Aligned_cols=100 Identities=9% Similarity=0.049 Sum_probs=69.0
Q ss_pred EEEEechhhhcCC---CC--------cc-cc---cCcceehhhHhhhcCCH------HHHhhhhcC--CCCcEEeCCChh
Q 045218 48 VAVVDANAIIQGA---HN--------LT-NF---ADKFVTVPEVLAEIRDP------VSRNRLNFI--PFSIDSMEPSPD 104 (405)
Q Consensus 48 ~lVLDTsAFIkg~---~~--------L~-~~---a~kiYTtPeVI~EIRDk------~SR~rLe~L--p~~LkIrEPs~E 104 (405)
+++||||++|.-. .+ +. .+ ...+|+++-|+.|+--- ..+..+..+ ...+.|..++++
T Consensus 2 mi~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~l~~~~~~~~~~l~~l~~~~~~~v~~~~~~ 81 (156)
T 1w8i_A 2 AALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVESGVLNIIYTDDE 81 (156)
T ss_dssp EEEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTTSSSEEECCCHH
T ss_pred eEEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCeEEEeCCHH
Confidence 5899999998621 11 11 22 35789999999998432 233444544 345889888988
Q ss_pred HHHHHHHHHH-HhCCCCCCChHHHHHHHhhhhcceeecc-cccccC
Q 045218 105 SLNKVIKFAR-ATGDLQTLSDVDLKLIALTCTLETQMHG-TKHLRD 148 (405)
Q Consensus 105 sIkkV~eFAK-KTGD~~sLS~TDIkVIALAyeLe~E~~G-t~hLR~ 148 (405)
.+....+..+ +-++ ..|+-.|.-++|+|......... ..|++.
T Consensus 82 ~~~~A~~l~~~~~~~-~~l~~~Dali~A~A~~~g~~l~T~D~dF~~ 126 (156)
T 1w8i_A 82 VERKALEVFKARVYE-KGFSYTDAISEVVAEELKLKLISYDSRFSL 126 (156)
T ss_dssp HHHHHHHHHHHTTTS-TTCCHHHHHHHHHHHHHTCEEECSCTTCSS
T ss_pred HHHHHHHHHHHHhcc-CCCCHhHHHHHHHHHHcCCEEEEeCcccCc
Confidence 8888888877 6665 45999999999999988875443 245543
No 6
>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural genomics, unknown function; 2.52A {Pyrobaculum aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A
Probab=91.23 E-value=0.15 Score=44.13 Aligned_cols=93 Identities=19% Similarity=0.236 Sum_probs=61.3
Q ss_pred CCCceE-EEEechhhhcCCCC----cccccCcceehhhHhhhcCCHHHHh-------------hhhcCCCCcEEeCCChh
Q 045218 43 TEGIAV-AVVDANAIIQGAHN----LTNFADKFVTVPEVLAEIRDPVSRN-------------RLNFIPFSIDSMEPSPD 104 (405)
Q Consensus 43 ~~~ik~-lVLDTsAFIkg~~~----L~~~a~kiYTtPeVI~EIRDk~SR~-------------rLe~Lp~~LkIrEPs~E 104 (405)
..+|.. +|||||++++-... +.. ...++++.-|+.|+..--.|. .|..+...+.+...+
T Consensus 23 ~~~M~~~ivvDTSvlv~~l~~~~~~l~~-~~~~~ip~l~~~Ev~~vL~r~~r~~~l~~~~a~~~l~~ll~~l~v~~~~-- 99 (158)
T 1v8p_A 23 QGAMAVEYLVDASALYALAAHYDKWIKH-REKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDP-- 99 (158)
T ss_dssp ----CCCEEECHHHHHHHTTCHHHHGGG-GGGEEECHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHTSEECCCC--
T ss_pred cCCCcceEEeeHHHHHHHHHhhHHHHhh-cCCEEeHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCeEEeCc--
Confidence 356765 99999999976211 111 246788888999987543332 222111125666665
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218 105 SLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG 142 (405)
Q Consensus 105 sIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G 142 (405)
.+..+.+.+.+.| ||--|--.||+|..+......
T Consensus 100 ~~~~A~~la~~~~----Ls~yDA~~lAlA~~~g~~L~T 133 (158)
T 1v8p_A 100 PLDEVLRVAVERG----LTFYDASYAYVAESSGLVLVT 133 (158)
T ss_dssp CHHHHHHHHHHHT----CCHHHHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHHHC----cCHHHHHHHHHHHHhCCeEEe
Confidence 3788888898877 899999999999999876543
No 7
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=74.12 E-value=0.43 Score=42.01 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=27.8
Q ss_pred eEEEEechhhhcCCCCccccc----CcceehhhHhhhcCCH
Q 045218 47 AVAVVDANAIIQGAHNLTNFA----DKFVTVPEVLAEIRDP 83 (405)
Q Consensus 47 k~lVLDTsAFIkg~~~L~~~a----~kiYTtPeVI~EIRDk 83 (405)
+++|+|||+||..-..|..+. ..++.+.-|++||+..
T Consensus 13 ~~~VlDTNvLl~~~~~l~~~~~~~~~~viIP~~VleELd~l 53 (186)
T 2dok_A 13 LFLVPDTNGFIDHLASLARLLESRKYILVVPLIVINELDGL 53 (186)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHTSSEEEEEHHHHHHHHHH
T ss_pred CEEEEEhHHHHcCHHHHHHHHcCCCeEEEECHHHHHHHHHh
Confidence 589999999998732344443 4788888899999863
No 8
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=71.12 E-value=7.7 Score=30.36 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=58.7
Q ss_pred EEEechhhhcCC--CC-------cccc-cCcceehhhHhhhcCCHHH-----------HhhhhcC-C--CCcEEeCCChh
Q 045218 49 AVVDANAIIQGA--HN-------LTNF-ADKFVTVPEVLAEIRDPVS-----------RNRLNFI-P--FSIDSMEPSPD 104 (405)
Q Consensus 49 lVLDTsAFIkg~--~~-------L~~~-a~kiYTtPeVI~EIRDk~S-----------R~rLe~L-p--~~LkIrEPs~E 104 (405)
++||||+||.-. .+ +... ...+|+.+-|+.|+.-.-. +..+..+ . +.+.+...+.+
T Consensus 2 ~llDTnvli~~~~~~~~~~~~~~l~~~~~~~~~is~~~~~El~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~il~~~~~ 81 (139)
T 2h1c_A 2 ILLDTNVISEPLRPQPNERVVAWLDSLILEDVYLSAITVAELRLGVALLLNGKKKNVLHERLEQSILPLFAGRILPFDEP 81 (139)
T ss_dssp EEECHHHHTGGGSSSCCHHHHHHHHHSCGGGEEEEHHHHHHHHHHHHTCSCHHHHHHHHHHHHHTTGGGGTTCEECCCHH
T ss_pred EeeehHHHHHHHcCCCCHHHHHHHHhCCcccEEeeHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhccCCcCCCCHH
Confidence 789999998641 11 1111 2468899999999863221 1223332 2 22478888877
Q ss_pred HHHHHHHHHHH---hCCCCCCChHHHHHHHhhhhcceeecc
Q 045218 105 SLNKVIKFARA---TGDLQTLSDVDLKLIALTCTLETQMHG 142 (405)
Q Consensus 105 sIkkV~eFAKK---TGD~~sLS~TDIkVIALAyeLe~E~~G 142 (405)
......+...+ .|- .++..|.-++|.|.........
T Consensus 82 ~~~~a~~l~~~~~~~g~--~~~~~D~liaA~A~~~~~~lvT 120 (139)
T 2h1c_A 82 VAAIYAQIRSYAKTHGK--EIAAADGYIAATAKQHSLTVAT 120 (139)
T ss_dssp HHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHHHHcCC--CCCccHHHHHHHHHHcCCeEEE
Confidence 77666665544 352 6899999999999988775433
No 9
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=69.38 E-value=3 Score=33.85 Aligned_cols=92 Identities=9% Similarity=-0.060 Sum_probs=57.6
Q ss_pred EEEEechhhhcCCC----Cccc---ccCcceehhhHhhhcCCHH------HHhhhhcCCCCcEEeCCChhHHHHHHHHHH
Q 045218 48 VAVVDANAIIQGAH----NLTN---FADKFVTVPEVLAEIRDPV------SRNRLNFIPFSIDSMEPSPDSLNKVIKFAR 114 (405)
Q Consensus 48 ~lVLDTsAFIkg~~----~L~~---~a~kiYTtPeVI~EIRDk~------SR~rLe~Lp~~LkIrEPs~EsIkkV~eFAK 114 (405)
.++||||+||.-.. .+.. -...+|+.+-|+.|+.-.- .+..+..+...+.+...+.+.+....+...
T Consensus 6 ~~llDTnvli~~l~~~~~~~~~~~~~~~~~~is~i~~~El~~~~~~~~~~~~~~~~~~l~~~~il~~~~~~~~~a~~l~~ 85 (149)
T 1v96_A 6 DITFDSLALIKMHSQNMKRILEVTLAKFTVNLSIVTVYRYLTARAYLKKNIEAEFEILKDIYNIVPLLDDIAIKAAQIEA 85 (149)
T ss_dssp EEEECHHHHHHHTSGGGHHHHHHHHHHCEEEEEHHHHHHHHHHC--CCSCHHHHHHHHHHHSEEECCCHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHccchHHHHHHHhcCCCEEeeHhhHHHHHHHHHhcCcchHHHHHHHHhcCCeeCCCHHHHHHHHHHHH
Confidence 58999999997511 0100 0135789999999986321 122232222236777777776666555543
Q ss_pred ---HhCCCCCCChHHHHHHHhhhhcceeec
Q 045218 115 ---ATGDLQTLSDVDLKLIALTCTLETQMH 141 (405)
Q Consensus 115 ---KTGD~~sLS~TDIkVIALAyeLe~E~~ 141 (405)
+.|- .++..|.-++|.|........
T Consensus 86 ~~~~~g~--~~~~~D~lIaA~A~~~~~~lv 113 (149)
T 1v96_A 86 NLIKKEI--TLDMEDIITATTAIYTNSLLV 113 (149)
T ss_dssp HHHHTTC--CCCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHCCC--CCCHhHHHHHHHHHHcCCEEE
Confidence 3352 488999999999998876544
No 10
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=68.88 E-value=4.7 Score=32.02 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=64.5
Q ss_pred eEEEEechhhhcC---CCC-c----ccccCcceehhhHhhhcCCHH--------HHhhhhcCCCCcEEeCCChhHHHHHH
Q 045218 47 AVAVVDANAIIQG---AHN-L----TNFADKFVTVPEVLAEIRDPV--------SRNRLNFIPFSIDSMEPSPDSLNKVI 110 (405)
Q Consensus 47 k~lVLDTsAFIkg---~~~-L----~~~a~kiYTtPeVI~EIRDk~--------SR~rLe~Lp~~LkIrEPs~EsIkkV~ 110 (405)
..++|||+++|.- ..+ + ......+|+..-++.|+.-.- .+..+..+...+.|...+.+......
T Consensus 2 M~~llDTnvli~~~~~~~~~~~~~l~~~~~~~~iS~i~~~El~~~~~~~~~~~~~~~~l~~~l~~~~il~~~~~~~~~a~ 81 (132)
T 3tnd_A 2 LKFMLDTNICIFTIKNKPASVRERFNLNQGKMCISSVTLMELIYGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHTG 81 (132)
T ss_dssp CCEEECHHHHHHHHHHCCHHHHHHHHHHTTSEEEEHHHHHHHHHHHHTSSCHHHHHHHHHHHHHTSEEECBCHHHHHHHH
T ss_pred ceeeeeHHHHHHHHcCCcHHHHHHHHhcCCCEEeeHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccCCCHHHHHHHH
Confidence 3589999999952 111 1 111257888888999985321 22334433234678888887776665
Q ss_pred HHHH---HhCCCCCCChHHHHHHHhhhhcceeecc--cccccCCC
Q 045218 111 KFAR---ATGDLQTLSDVDLKLIALTCTLETQMHG--TKHLRDAP 150 (405)
Q Consensus 111 eFAK---KTGD~~sLS~TDIkVIALAyeLe~E~~G--t~hLR~eP 150 (405)
++.. +.| ..++..|.-++|.|......... ..+.+.-|
T Consensus 82 ~l~~~~~~~g--~~~~~~D~lIaA~A~~~~~~lvT~d~~dF~~~~ 124 (132)
T 3tnd_A 82 QIRAELARQG--RPVGPFDQMIAGHARSRGLIIVTNNTREFERVG 124 (132)
T ss_dssp HHHHHHHHHT--CCCCHHHHHHHHHHHHTTCEEEESCCHHHHTST
T ss_pred HHHHHHHHCC--CCCCchHHHHHHHHHHcCCEEEECCHHHhCCCC
Confidence 5543 346 35899999999999988776543 24554433
No 11
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=61.21 E-value=15 Score=29.16 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=64.2
Q ss_pred EEEEechhhhcC---CCC-c----cccc--CcceehhhHhhhcCCHHH--------HhhhhcCCCCcEEeCCChhHHHHH
Q 045218 48 VAVVDANAIIQG---AHN-L----TNFA--DKFVTVPEVLAEIRDPVS--------RNRLNFIPFSIDSMEPSPDSLNKV 109 (405)
Q Consensus 48 ~lVLDTsAFIkg---~~~-L----~~~a--~kiYTtPeVI~EIRDk~S--------R~rLe~Lp~~LkIrEPs~EsIkkV 109 (405)
+++|||++||.- ..+ + .... ..+|+..-|+.|+.-.-. +..+..+...+.|...+.+.....
T Consensus 2 ~~llDTnvli~~~~~~~~~~~~~l~~~~~~~~~~is~i~~~El~~~~~~~~~~~~~~~~l~~~l~~~~il~~~~~~~~~a 81 (134)
T 3zvk_A 2 IYMLGTNICVYAINKHPDSYYNNLELLAKNNTIAISSIVLAELQYGVSKSKKKEQNQSKLDIFLSRLEIIDFSAKCTFYY 81 (134)
T ss_dssp EEEECHHHHHHHHHHCCHHHHHHHHHHHTTSEEEEEHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTSEEECBCHHHHHHH
T ss_pred eEEeeHHHHHHHHcCCcHHHHHHHHhcCcCCcEEeeheeHHHHHHHHHhcCCHHHHHHHHHHHHhcCceecCCHHHHHHH
Confidence 589999999952 111 1 1111 578999999999864322 233333323467887787777665
Q ss_pred HHHHH---HhCCCCCCChHHHHHHHhhhhcceeecc--cccccCCC
Q 045218 110 IKFAR---ATGDLQTLSDVDLKLIALTCTLETQMHG--TKHLRDAP 150 (405)
Q Consensus 110 ~eFAK---KTGD~~sLS~TDIkVIALAyeLe~E~~G--t~hLR~eP 150 (405)
.++.. +.|- .++..|.-++|.|+........ ..|.+.-|
T Consensus 82 ~~l~~~~~~~g~--~~~~~D~lIaA~A~~~~~~lvT~d~~df~~~~ 125 (134)
T 3zvk_A 82 GELRTELEQKGL--IIGNNDLLIASHAIAENATLVTNNIKEFKRIP 125 (134)
T ss_dssp HHHHHHHHHTTC--CCCHHHHHHHHHHHHHTCEEEESSTTTSCSCT
T ss_pred HHHHHHHHHcCC--CCCccHHHHHHHHHHCCCEEEECCHHHhcCCC
Confidence 55543 3453 6899999999999987776543 24555444
No 12
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=57.39 E-value=52 Score=28.21 Aligned_cols=94 Identities=12% Similarity=-0.030 Sum_probs=57.9
Q ss_pred EEEEechhhhcCC--CCcc---cc--cCcceehhhHhhhcC----CHHHHhhhhcC--CCCcEEeCCChhHHHHH---HH
Q 045218 48 VAVVDANAIIQGA--HNLT---NF--ADKFVTVPEVLAEIR----DPVSRNRLNFI--PFSIDSMEPSPDSLNKV---IK 111 (405)
Q Consensus 48 ~lVLDTsAFIkg~--~~L~---~~--a~kiYTtPeVI~EIR----Dk~SR~rLe~L--p~~LkIrEPs~EsIkkV---~e 111 (405)
.|+||||++|.-. .... .. ...+|+.+=|+.||. +...+.+|..+ ...+.|...+.+.-... ..
T Consensus 20 ~~LLDTnvli~~l~~~~~~~l~~~~~~~~l~iS~it~~El~~G~~~~~~~~~l~~~~~L~~~~vlp~d~~~a~~a~~i~~ 99 (156)
T 3h87_A 20 RWLIDKSALVRLTDSPDMEIWSNRIERGLVHITGVTRLEVGFSAECGEIARREFREPPLSAMPVEYLTPRIEDRALEVQT 99 (156)
T ss_dssp CEEECHHHHTTGGGCTTHHHHHHHHHTTCEEEEHHHHHHHHHHSSSHHHHHHHHHSTTGGGSCEECCCHHHHHHHHHHHH
T ss_pred CEEEEHHHHHHHHcCHHHHHHHHhccCCCEEEccccHHHHhhhhhCchHHHHHHHhhcccCCCeecCCHHHHHHHHHHHH
Confidence 5899999998531 1111 11 246788888888864 44455555544 33456666665544333 23
Q ss_pred HHHHhCCCCCCChHHHHHHHhhhhcceeec
Q 045218 112 FARATGDLQTLSDVDLKLIALTCTLETQMH 141 (405)
Q Consensus 112 FAKKTGD~~sLS~TDIkVIALAyeLe~E~~ 141 (405)
..++.|--..++..|+-|.|.|+.......
T Consensus 100 ~l~~~G~~~~i~~~D~lIAAtA~~~gl~Lv 129 (156)
T 3h87_A 100 LLADRGHHRGPSIPDLLIAATAELSGLTVL 129 (156)
T ss_dssp HHHHTTCTTSSCHHHHHHHHHHHHHTCEEE
T ss_pred HHHhcCCCCCCChhHHHHHHHHHHCCCEEE
Confidence 345667533589999988888888776654
No 13
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=52.55 E-value=55 Score=27.62 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=57.9
Q ss_pred CCCceEEEEechhhhcC--CCCccc--ccCcceehhhHhhhcCC-------HH-HHhhhhc--CCCCcEEeCCChhHHHH
Q 045218 43 TEGIAVAVVDANAIIQG--AHNLTN--FADKFVTVPEVLAEIRD-------PV-SRNRLNF--IPFSIDSMEPSPDSLNK 108 (405)
Q Consensus 43 ~~~ik~lVLDTsAFIkg--~~~L~~--~a~kiYTtPeVI~EIRD-------k~-SR~rLe~--Lp~~LkIrEPs~EsIkk 108 (405)
..++..++||||++|.- +.+... ....+|+..-++.||.- .. .+.+|.. +...+.|...+.+....
T Consensus 17 ~~~~~~~LlDTnvlI~~l~g~~~~~~~~~~~l~iS~It~~El~~G~~~~~~~~~~~~~l~~~~~l~~~~ilp~d~~~a~~ 96 (150)
T 3dbo_B 17 STTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARM 96 (150)
T ss_dssp ---CCEEEECSGGGBC-----CCCGGGSCSEEEEEHHHHHHHHHHHHHCSSHHHHHHHHHHHHTTTTBCEECCCHHHHHH
T ss_pred ccccCEEEEeHHHHHHHHcCCcchhhcCCCcEEEchhHHHHHHHHHHhCcchHHHHHHHHHHHHhhCCeEeccCHHHHHH
Confidence 34566899999999942 122111 13578888888888641 11 1234442 22346777777766655
Q ss_pred HHHH---HHHhCCCCCCChHHHHHHHhhhhcceee
Q 045218 109 VIKF---ARATGDLQTLSDVDLKLIALTCTLETQM 140 (405)
Q Consensus 109 V~eF---AKKTGD~~sLS~TDIkVIALAyeLe~E~ 140 (405)
..++ .++.|- .++..|.-+.|.|+......
T Consensus 97 a~~l~~~l~~~G~--~~~~~D~lIaA~A~~~~~~L 129 (150)
T 3dbo_B 97 WARLRIHLAESGR--RVRINDLWIAAVAASRALPV 129 (150)
T ss_dssp HHHHHHHHHHHTC--CCBHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHcCC--CCCCchHHHHHHHHHCCCEE
Confidence 4443 345673 78899999999998877654
No 14
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=52.39 E-value=2.8 Score=35.05 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=27.0
Q ss_pred CCCceEEEEechhhhcCC---CCcc----ccc-CcceehhhHhhhcCCHH
Q 045218 43 TEGIAVAVVDANAIIQGA---HNLT----NFA-DKFVTVPEVLAEIRDPV 84 (405)
Q Consensus 43 ~~~ik~lVLDTsAFIkg~---~~L~----~~a-~kiYTtPeVI~EIRDk~ 84 (405)
...|+.+|||||.+|... ..+. .+. ..++++.-|+.|+....
T Consensus 20 ~~pmk~vvLDTNvli~~~~~~~~~~~~l~~~l~~~~~I~~~vl~EL~~~~ 69 (147)
T 1o4w_A 20 NNKVRCAVVDTNVLMYVYLNKADVVGQLREFGFSRFLITASVKRELEKLE 69 (147)
T ss_dssp --CCEEEEECHHHHHHHHHHTCCHHHHHHHTTEEEEEEEHHHHHHHHHHH
T ss_pred CCCCCEEEEEhhHHHHHHHcCchHHHHHHHhccCCEEEcHHHHHHHHHHH
Confidence 445655999999999751 0110 110 47889999999998643
No 15
>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens}
Probab=50.36 E-value=3 Score=37.58 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=40.4
Q ss_pred eEEEEechhhhcCCCCcccc---cC-cceehhhHhhhcCC-----HHHHhhhhcC-------CCCcEEeCCChhHHHHHH
Q 045218 47 AVAVVDANAIIQGAHNLTNF---AD-KFVTVPEVLAEIRD-----PVSRNRLNFI-------PFSIDSMEPSPDSLNKVI 110 (405)
Q Consensus 47 k~lVLDTsAFIkg~~~L~~~---a~-kiYTtPeVI~EIRD-----k~SR~rLe~L-------p~~LkIrEPs~EsIkkV~ 110 (405)
.++|+||++||..-..+..+ .. .++.+--||+|+-. ..+|..+..| ...|+...+....... .
T Consensus 3 ~ylVlDTN~Li~~l~~i~~l~~~~~~~IvIP~~Vi~ELD~LK~~~~~AR~Air~Le~~~~~~~~~lr~Q~~~~~~~~~-~ 81 (164)
T 2hwy_A 3 PYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQKEVGKSFER-H 81 (164)
T ss_dssp CEEEECHHHHHHCHHHHHHHHHHSSSEEEECHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTCSSEEEC-----------
T ss_pred ceEEechHHHHhCHHHHHHHHhCCCcEEEEcHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCeEEEEecCCccccc-c
Confidence 37999999999863233333 22 45666669998742 3455544433 1225555443211110 0
Q ss_pred HHHHHhCCCCCCChHHHHHHHhhhhccee
Q 045218 111 KFARATGDLQTLSDVDLKLIALTCTLETQ 139 (405)
Q Consensus 111 eFAKKTGD~~sLS~TDIkVIALAyeLe~E 139 (405)
.+ +.-| .....|-.||--++.|...
T Consensus 82 ~~--~~~D--~~~~~~d~IL~CC~~l~~~ 106 (164)
T 2hwy_A 82 KL--KRQD--ADAWTLYKILDSCKQLTLA 106 (164)
T ss_dssp ---------------CHHHHHHHHHHSSC
T ss_pred cc--ccCC--ccccchhHHHHHHHHHHhc
Confidence 11 1112 3344556777777777544
No 16
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=23.18 E-value=83 Score=24.72 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=28.4
Q ss_pred HHHhhhhcC--CC-CcEEeCCChhHHHHHHHHHHHhC
Q 045218 84 VSRNRLNFI--PF-SIDSMEPSPDSLNKVIKFARATG 117 (405)
Q Consensus 84 ~SR~rLe~L--p~-~LkIrEPs~EsIkkV~eFAKKTG 117 (405)
++++.|..+ ++ .|+|.--++.+++-|..||+++|
T Consensus 17 ~~kkal~~l~~~G~~L~V~~dd~~a~~dI~~~~~~~G 53 (87)
T 3hz7_A 17 RAKKALAELGEAGGVVTVLVDNDISRQNLQKMAEGMG 53 (87)
T ss_dssp HHHHHHHTTGGGCCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCCEEEEEECCccHHHHHHHHHHHCC
Confidence 456777777 33 48999999999999999999999
Done!