BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045222
         (1049 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic
          Subunit (Irx3) Of Cellulose Synthase
          Length = 93

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 26 SAARPLQQLGGQKCHICXXXXXXXXXXXXXFVACNECAFPICRTCYEYERREGNQVCPQC 85
          S  +PL+ L GQ C IC             FVACNEC FP CR CYEYERREG Q CPQC
Sbjct: 6  SGPKPLKNLDGQFCEICGDQIGLTVEGDL-FVACNECGFPACRPCYEYERREGTQNCPQC 64

Query: 86 KTRFRRLKGSARV 98
          KTR++RL+GS RV
Sbjct: 65 KTRYKRLRGSPRV 77


>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 738 EVGWIYG-SVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSV 796
           E G   G ++T+D  T L +H  GW+S+Y   DR    G  P   +  +    RWA G +
Sbjct: 331 EAGGFAGETITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMM 388

Query: 797 EVFLSRHCPVWYGYGGGLKWLERLSYINACLYPFTSIPLLVYCALPAVCLLTG 849
           ++ L ++ P+   +  GL   +RL Y+N+  + F  +  +++   P + L  G
Sbjct: 389 QMLLLKN-PL---FRRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFG 437



 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 118/318 (37%), Gaps = 89/318 (27%)

Query: 296 PVKDAYALWVISVICEVWFALS-WILDQFPKWLPIDRETYLDRLSLRYEKPGQPSKLMPV 354
           P  DA  L+ + +     F++S + L+ F    P DR          + +P QP +L  V
Sbjct: 92  PALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRP---------FPRPLQPEELPTV 142

Query: 355 DIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARK 414
           DI V + +   EP+ + + T+ +   + YP    +  + DDG        +S   E A+K
Sbjct: 143 DILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGT--DQRCMSPDPELAQK 197

Query: 415 WPRAPEWYFAQKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGL 474
                                    +ERR   RE +Q    +                  
Sbjct: 198 ------------------------AQERR---RELQQLCRELG----------------- 213

Query: 475 DTDGNELPRLVYVSREKRPGFNNHKKAGAMNA-LVRVSAVLTNSPYLLNLDCDHYINNSK 533
                    +VY +RE+    N H KAG M+A L R+   L     ++  D DH  +   
Sbjct: 214 ---------VVYSTRER----NEHAKAGNMSAALERLKGEL-----VVVFDADHVPSRDF 255

Query: 534 ALREAMCFMMDPLLGKRVCYVQFPRRF---DGINQD----DRFANRKTVFFDINMKGLDG 586
             R    F+ DP L      VQ P  F   D I ++    DR      +F+    +GLD 
Sbjct: 256 LARTVGYFVEDPDL----FLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDR 311

Query: 587 IQGPINVGTGCVFRRQAF 604
             G    G+  V RR+A 
Sbjct: 312 WGGAFFCGSAAVLRRRAL 329


>pdb|1UR6|B Chain B, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
          Length = 52

 Score = 31.6 bits (70), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 56 FVACNECAFPICRTCYEYERREGNQVCPQCKTRF 89
          F  C  C + ICR C+   R + N +CP C+  +
Sbjct: 17 FFPCT-CGYQICRFCWHRIRTDENGLCPACRKPY 49


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,582,771
Number of Sequences: 62578
Number of extensions: 1252045
Number of successful extensions: 3276
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3270
Number of HSP's gapped (non-prelim): 5
length of query: 1049
length of database: 14,973,337
effective HSP length: 109
effective length of query: 940
effective length of database: 8,152,335
effective search space: 7663194900
effective search space used: 7663194900
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)