Query 045222
Match_columns 1049
No_of_seqs 386 out of 1894
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 11:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02436 cellulose synthase A 100.0 7E-304 2E-308 2678.1 79.1 1040 1-1049 1-1094(1094)
2 PLN02400 cellulose synthase 100.0 4E-302 9E-307 2673.5 77.4 1024 1-1048 1-1085(1085)
3 PLN02638 cellulose synthase A 100.0 1E-290 2E-295 2573.1 76.1 1008 22-1048 3-1079(1079)
4 PLN02189 cellulose synthase 100.0 2E-284 4E-289 2513.2 77.1 993 1-1048 1-1040(1040)
5 PLN02915 cellulose synthase A 100.0 3E-280 6E-285 2477.6 73.7 970 31-1048 10-1044(1044)
6 PLN02195 cellulose synthase A 100.0 4E-263 8E-268 2319.7 73.2 933 33-1048 3-977 (977)
7 PLN02248 cellulose synthase-li 100.0 5E-230 1E-234 2044.3 66.7 917 3-1035 88-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 5E-199 1E-203 1734.8 44.4 681 354-1042 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 9E-185 2E-189 1617.4 53.4 694 256-1027 7-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 3E-175 7E-180 1544.0 59.1 671 255-1025 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 7.9E-67 1.7E-71 634.4 45.6 490 275-1000 57-560 (713)
12 PRK11498 bcsA cellulose syntha 100.0 9.2E-67 2E-71 635.3 42.3 472 277-1000 189-673 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 2.8E-44 6.1E-49 316.0 4.7 80 28-108 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 2.3E-36 5.1E-41 364.7 42.9 354 274-840 41-414 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 2E-34 4.3E-39 312.1 21.7 244 354-797 1-253 (254)
16 COG1215 Glycosyltransferases, 100.0 2.4E-32 5.2E-37 311.1 28.3 233 351-801 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 3.1E-31 6.7E-36 307.2 30.7 231 349-801 72-306 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 2.2E-29 4.7E-34 291.7 32.2 288 348-853 45-341 (439)
19 PRK11204 N-glycosyltransferase 100.0 5.8E-29 1.3E-33 284.5 31.7 234 349-801 51-285 (420)
20 PRK14716 bacteriophage N4 adso 100.0 3E-27 6.4E-32 277.6 29.9 266 350-828 64-356 (504)
21 PRK11234 nfrB bacteriophage N4 100.0 7.4E-27 1.6E-31 284.0 26.4 269 349-830 60-363 (727)
22 cd06437 CESA_CaSu_A2 Cellulose 99.9 6.6E-27 1.4E-31 245.3 21.3 228 352-795 1-232 (232)
23 cd06421 CESA_CelA_like CESA_Ce 99.9 5.6E-27 1.2E-31 243.3 19.4 229 352-799 1-234 (234)
24 cd06427 CESA_like_2 CESA_like_ 99.9 2.2E-25 4.8E-30 236.1 19.6 233 352-801 1-236 (241)
25 cd06435 CESA_NdvC_like NdvC_li 99.9 9E-25 2E-29 228.7 21.3 231 355-803 1-235 (236)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 5.7E-25 1.2E-29 228.6 6.1 224 352-794 1-228 (228)
27 TIGR03472 HpnI hopanoid biosyn 99.9 9.3E-22 2E-26 223.5 25.4 235 349-796 38-273 (373)
28 PRK15489 nfrB bacteriophage N4 99.9 1.3E-21 2.7E-26 236.5 27.8 239 349-800 68-342 (703)
29 cd04190 Chitin_synth_C C-termi 99.9 4.9E-23 1.1E-27 220.2 11.4 223 356-797 1-243 (244)
30 cd04192 GT_2_like_e Subfamily 99.9 1.8E-21 3.9E-26 200.7 17.3 226 356-794 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.9 3.5E-21 7.6E-26 198.0 16.3 192 352-793 1-194 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.8 7.9E-20 1.7E-24 190.7 18.2 120 353-564 1-120 (235)
33 cd06439 CESA_like_1 CESA_like_ 99.8 2.7E-19 5.9E-24 189.1 20.0 127 348-563 25-151 (251)
34 TIGR03469 HonB hopene-associat 99.8 1.5E-18 3.3E-23 198.1 24.7 133 348-557 36-169 (384)
35 cd02525 Succinoglycan_BP_ExoA 99.7 3.6E-17 7.9E-22 170.8 18.5 232 353-800 1-232 (249)
36 COG2943 MdoH Membrane glycosyl 99.7 3.6E-14 7.9E-19 162.5 36.0 285 350-843 142-437 (736)
37 cd06436 GlcNAc-1-P_transferase 99.7 6.3E-16 1.4E-20 159.2 13.8 165 356-604 1-175 (191)
38 PF13632 Glyco_trans_2_3: Glyc 99.6 1.2E-15 2.7E-20 155.9 13.9 138 519-795 1-143 (193)
39 cd06438 EpsO_like EpsO protein 99.6 1E-14 2.2E-19 148.4 12.5 162 356-604 1-167 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.6 8.6E-14 1.9E-18 141.8 17.3 122 352-560 1-123 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.5 6.2E-13 1.3E-17 135.7 17.6 121 355-562 1-122 (201)
42 cd06433 GT_2_WfgS_like WfgS an 99.4 7.1E-12 1.5E-16 125.9 15.4 116 355-562 1-117 (202)
43 cd04196 GT_2_like_d Subfamily 99.4 9.5E-12 2.1E-16 127.2 15.1 119 355-562 1-121 (214)
44 cd02510 pp-GalNAc-T pp-GalNAc- 99.4 1.2E-11 2.6E-16 136.1 16.3 110 355-544 1-110 (299)
45 cd06913 beta3GnTL1_like Beta 1 99.3 5E-11 1.1E-15 124.4 16.4 111 356-544 1-111 (219)
46 cd06420 GT2_Chondriotin_Pol_N 99.3 5.8E-11 1.3E-15 119.1 16.0 106 356-545 1-106 (182)
47 cd02522 GT_2_like_a GT_2_like_ 99.3 6.2E-11 1.3E-15 122.6 16.7 100 354-545 1-100 (221)
48 PLN02726 dolichyl-phosphate be 99.3 7.4E-11 1.6E-15 125.9 17.5 124 349-557 6-129 (243)
49 cd04186 GT_2_like_c Subfamily 99.3 8.9E-11 1.9E-15 114.6 15.0 110 356-557 1-111 (166)
50 PF13506 Glyco_transf_21: Glyc 99.3 2.1E-11 4.6E-16 125.9 10.5 61 496-564 14-74 (175)
51 PF03142 Chitin_synth_2: Chiti 99.2 1.4E-09 3E-14 129.1 26.1 52 745-798 324-377 (527)
52 cd06442 DPM1_like DPM1_like re 99.2 2.7E-10 5.7E-15 118.1 17.4 114 356-557 1-114 (224)
53 PF00535 Glycos_transf_2: Glyc 99.2 1.8E-11 3.9E-16 118.4 7.1 164 355-605 1-166 (169)
54 cd04185 GT_2_like_b Subfamily 99.2 2.3E-10 4.9E-15 117.4 15.1 117 356-560 1-117 (202)
55 cd02526 GT2_RfbF_like RfbF is 99.2 1.6E-10 3.5E-15 120.9 12.5 113 356-560 1-117 (237)
56 PRK10073 putative glycosyl tra 99.2 7E-10 1.5E-14 125.1 17.3 110 350-545 4-113 (328)
57 cd06423 CESA_like CESA_like is 99.1 5.4E-10 1.2E-14 107.8 12.8 163 356-606 1-168 (180)
58 PRK10063 putative glycosyl tra 99.0 4.1E-09 8.8E-14 114.4 16.6 105 352-541 1-106 (248)
59 cd04188 DPG_synthase DPG_synth 99.0 3.6E-09 7.8E-14 109.9 14.6 117 356-559 1-120 (211)
60 PRK10018 putative glycosyl tra 99.0 7.7E-09 1.7E-13 114.5 17.6 110 350-544 3-112 (279)
61 PF14570 zf-RING_4: RING/Ubox 99.0 1.8E-10 4E-15 95.1 3.2 48 39-90 1-48 (48)
62 cd04179 DPM_DPG-synthase_like 99.0 3.9E-09 8.3E-14 106.0 13.2 120 356-562 1-120 (185)
63 TIGR01556 rhamnosyltran L-rham 98.8 5.2E-08 1.1E-12 106.2 15.3 70 482-561 45-114 (281)
64 cd04187 DPM1_like_bac Bacteria 98.8 3.7E-08 8E-13 99.6 12.5 107 482-606 55-161 (181)
65 PTZ00260 dolichyl-phosphate be 98.8 9.3E-08 2E-12 108.3 17.1 117 349-544 67-189 (333)
66 PRK13915 putative glucosyl-3-p 98.8 8E-08 1.7E-12 107.8 14.7 123 350-556 29-152 (306)
67 cd00761 Glyco_tranf_GTA_type G 98.7 4.1E-07 8.8E-12 85.7 13.7 113 356-557 1-114 (156)
68 KOG2571 Chitin synthase/hyalur 98.7 4.4E-07 9.5E-12 111.8 17.2 50 745-796 549-598 (862)
69 PF10111 Glyco_tranf_2_2: Glyc 98.6 1.1E-06 2.3E-11 97.1 16.1 63 498-566 74-136 (281)
70 COG1216 Predicted glycosyltran 98.5 2.2E-06 4.7E-11 95.6 15.8 123 351-562 2-126 (305)
71 PRK10714 undecaprenyl phosphat 98.4 2.7E-06 5.9E-11 96.2 13.1 111 351-543 5-116 (325)
72 COG0463 WcaA Glycosyltransfera 98.3 6.2E-06 1.4E-10 78.7 11.7 101 351-536 2-102 (291)
73 cd02511 Beta4Glucosyltransfera 98.1 2.6E-05 5.5E-10 83.1 11.6 99 353-545 1-99 (229)
74 KOG2547 Ceramide glucosyltrans 97.9 3.4E-05 7.4E-10 87.4 9.7 232 349-793 82-314 (431)
75 COG5175 MOT2 Transcriptional r 97.6 3E-05 6.6E-10 86.1 2.3 49 38-90 16-64 (480)
76 KOG2978 Dolichol-phosphate man 97.0 0.0037 7.9E-08 65.9 9.6 53 482-544 63-115 (238)
77 cd02514 GT13_GLCNAC-TI GT13_GL 96.8 0.012 2.6E-07 67.5 12.5 42 354-399 2-43 (334)
78 TIGR00570 cdk7 CDK-activating 95.5 0.016 3.6E-07 65.4 5.1 60 35-97 2-61 (309)
79 PF14446 Prok-RING_1: Prokaryo 94.5 0.027 5.8E-07 48.4 2.5 45 36-89 5-51 (54)
80 PF02364 Glucan_synthase: 1,3- 93.9 0.7 1.5E-05 58.4 14.0 101 689-824 382-483 (817)
81 KOG3737 Predicted polypeptide 93.4 0.3 6.5E-06 56.6 8.8 133 347-566 150-283 (603)
82 KOG3736 Polypeptide N-acetylga 91.9 0.18 3.8E-06 61.7 4.8 49 348-399 138-186 (578)
83 KOG2977 Glycosyltransferase [G 91.0 1 2.3E-05 50.7 9.1 43 497-543 142-186 (323)
84 KOG3738 Predicted polypeptide 89.2 1.4 2.9E-05 51.7 8.4 48 349-399 121-168 (559)
85 cd00162 RING RING-finger (Real 88.5 0.51 1.1E-05 36.7 3.3 44 38-88 1-44 (45)
86 PF05290 Baculo_IE-1: Baculovi 88.0 0.37 7.9E-06 48.6 2.6 52 37-93 81-135 (140)
87 KOG2068 MOT2 transcription fac 86.3 0.54 1.2E-05 53.7 3.1 52 36-92 249-300 (327)
88 KOG3800 Predicted E3 ubiquitin 84.9 0.71 1.5E-05 51.9 3.1 53 37-92 1-53 (300)
89 smart00504 Ubox Modified RING 84.7 1.2 2.7E-05 38.1 3.9 44 38-90 3-46 (63)
90 PRK14503 mannosyl-3-phosphogly 83.1 3.5 7.5E-05 48.0 7.6 43 497-542 142-184 (393)
91 PHA02929 N1R/p28-like protein; 82.1 1.7 3.7E-05 48.1 4.6 56 34-90 172-227 (238)
92 PF13704 Glyco_tranf_2_4: Glyc 81.7 3.4 7.5E-05 38.2 5.9 31 366-401 3-33 (97)
93 PF03452 Anp1: Anp1; InterPro 81.0 27 0.00058 39.6 13.4 57 348-408 21-79 (269)
94 TIGR02460 osmo_MPGsynth mannos 79.5 4.5 9.7E-05 46.9 6.8 43 497-542 141-183 (381)
95 PF13639 zf-RING_2: Ring finge 75.7 1.7 3.7E-05 35.1 1.7 43 38-86 2-44 (44)
96 KOG0823 Predicted E3 ubiquitin 74.3 3.1 6.6E-05 45.7 3.6 47 35-90 46-95 (230)
97 PF03604 DNA_RNApol_7kD: DNA d 74.2 2.1 4.6E-05 33.3 1.7 26 38-66 2-27 (32)
98 PRK14559 putative protein seri 74.1 1.4 3E-05 55.1 1.1 46 38-90 3-52 (645)
99 PLN03208 E3 ubiquitin-protein 73.6 3.7 8.1E-05 44.1 4.0 52 31-90 13-79 (193)
100 PF14447 Prok-RING_4: Prokaryo 72.8 1.5 3.3E-05 38.1 0.7 47 35-92 6-52 (55)
101 PHA02862 5L protein; Provision 71.9 2.9 6.2E-05 43.0 2.5 49 36-91 2-54 (156)
102 KOG0006 E3 ubiquitin-protein l 71.4 3.4 7.3E-05 47.0 3.2 40 31-72 310-352 (446)
103 PF13712 Glyco_tranf_2_5: Glyc 70.4 9 0.0002 41.6 6.1 50 497-554 39-89 (217)
104 PRK14502 bifunctional mannosyl 70.2 12 0.00027 47.2 7.9 43 497-542 146-188 (694)
105 smart00659 RPOLCX RNA polymera 66.3 3.5 7.6E-05 34.2 1.5 27 37-66 3-29 (44)
106 PF09488 Osmo_MPGsynth: Mannos 65.0 45 0.00099 39.2 10.5 40 498-540 142-181 (381)
107 smart00184 RING Ring finger. E 63.9 7.8 0.00017 28.7 3.0 39 39-85 1-39 (39)
108 PF02318 FYVE_2: FYVE-type zin 63.4 1 2.2E-05 44.4 -2.6 49 34-85 52-100 (118)
109 PF13920 zf-C3HC4_3: Zinc fing 63.2 7.5 0.00016 32.3 3.0 45 38-91 4-49 (50)
110 PF13923 zf-C3HC4_2: Zinc fing 62.7 7.1 0.00015 30.9 2.6 39 39-85 1-39 (39)
111 KOG2068 MOT2 transcription fac 62.0 3.2 6.9E-05 47.6 0.7 30 63-92 1-32 (327)
112 PF03966 Trm112p: Trm112p-like 61.4 1.4 2.9E-05 39.4 -1.9 26 68-93 42-67 (68)
113 COG4858 Uncharacterized membra 60.3 28 0.00061 37.5 7.1 64 946-1009 95-161 (226)
114 PF14471 DUF4428: Domain of un 60.1 6 0.00013 33.8 1.9 28 38-72 1-28 (51)
115 KOG0916 1,3-beta-glucan syntha 59.9 2.3E+02 0.005 38.9 16.3 80 745-834 1173-1258(1679)
116 COG5114 Histone acetyltransfer 58.5 3.2 6.9E-05 47.2 -0.1 36 38-78 7-43 (432)
117 PHA02825 LAP/PHD finger-like p 58.0 9 0.00019 40.1 3.1 51 35-92 7-61 (162)
118 KOG2932 E3 ubiquitin ligase in 57.5 6.7 0.00014 44.7 2.2 41 53-93 87-137 (389)
119 PF00097 zf-C3HC4: Zinc finger 56.6 8.2 0.00018 30.4 2.0 40 39-85 1-41 (41)
120 PRK00420 hypothetical protein; 56.2 4.7 0.0001 39.9 0.7 29 58-92 25-53 (112)
121 PHA02926 zinc finger-like prot 53.5 16 0.00036 40.1 4.3 63 33-95 167-235 (242)
122 PRK12495 hypothetical protein; 49.4 8.7 0.00019 42.0 1.5 28 57-91 43-70 (226)
123 TIGR00155 pqiA_fam integral me 47.7 11 0.00024 44.9 2.1 30 55-92 214-243 (403)
124 TIGR00599 rad18 DNA repair pro 47.7 15 0.00033 43.7 3.2 53 29-90 18-71 (397)
125 KOG0311 Predicted E3 ubiquitin 47.3 2.7 5.9E-05 48.5 -2.8 46 38-90 45-90 (381)
126 PF07282 OrfB_Zn_ribbon: Putat 46.2 15 0.00032 32.5 2.2 33 35-69 27-59 (69)
127 PF13240 zinc_ribbon_2: zinc-r 45.2 13 0.00028 26.9 1.3 8 39-46 2-9 (23)
128 KOG3507 DNA-directed RNA polym 44.8 9.4 0.0002 33.7 0.7 28 36-66 20-47 (62)
129 cd02335 ZZ_ADA2 Zinc finger, Z 44.7 17 0.00038 30.5 2.2 30 38-72 2-32 (49)
130 PRK15103 paraquat-inducible me 44.4 17 0.00037 43.4 3.0 29 55-92 220-248 (419)
131 smart00249 PHD PHD zinc finger 42.3 14 0.0003 29.0 1.3 31 38-73 1-31 (47)
132 COG1813 Predicted transcriptio 42.1 17 0.00037 38.3 2.2 35 39-78 6-40 (165)
133 PF14634 zf-RING_5: zinc-RING 42.0 27 0.00059 28.4 3.0 43 39-87 2-44 (44)
134 PF04641 Rtf2: Rtf2 RING-finge 41.7 21 0.00045 40.0 2.9 53 34-92 111-163 (260)
135 KOG1941 Acetylcholine receptor 40.3 13 0.00028 43.7 1.0 68 36-107 365-438 (518)
136 PRK04023 DNA polymerase II lar 40.1 19 0.00042 46.9 2.6 45 34-90 624-674 (1121)
137 PRK07220 DNA topoisomerase I; 39.4 13 0.00028 47.6 1.0 49 37-87 590-643 (740)
138 PRK00398 rpoP DNA-directed RNA 39.0 18 0.00039 29.9 1.5 27 38-66 5-31 (46)
139 COG0068 HypF Hydrogenase matur 38.6 23 0.0005 44.7 2.9 60 34-94 99-190 (750)
140 cd02249 ZZ Zinc finger, ZZ typ 38.2 27 0.00059 28.8 2.4 30 38-73 2-32 (46)
141 cd00350 rubredoxin_like Rubred 37.6 9.3 0.0002 29.6 -0.4 18 73-90 11-28 (33)
142 PF13896 Glyco_transf_49: Glyc 37.5 34 0.00073 39.4 3.9 40 514-554 125-164 (317)
143 COG0551 TopA Zn-finger domain 35.8 19 0.00041 36.3 1.4 49 34-87 15-68 (140)
144 KOG0320 Predicted E3 ubiquitin 35.5 32 0.0007 36.7 3.0 46 37-89 132-177 (187)
145 PF06906 DUF1272: Protein of u 35.1 39 0.00085 29.7 2.9 47 38-91 7-53 (57)
146 cd02336 ZZ_RSC8 Zinc finger, Z 34.9 27 0.00058 29.3 1.9 30 38-73 2-32 (45)
147 KOG3005 GIY-YIG type nuclease 34.3 27 0.00058 39.4 2.3 61 25-91 171-244 (276)
148 PF03884 DUF329: Domain of unk 34.2 22 0.00047 31.4 1.3 32 77-108 16-53 (57)
149 PF07649 C1_3: C1-like domain; 34.2 25 0.00054 26.5 1.5 28 38-70 2-29 (30)
150 TIGR01562 FdhE formate dehydro 34.0 46 0.001 38.4 4.2 44 35-88 183-233 (305)
151 KOG0457 Histone acetyltransfer 33.8 16 0.00034 43.6 0.5 57 37-101 15-74 (438)
152 COG1996 RPC10 DNA-directed RNA 32.9 21 0.00045 30.6 0.9 29 36-66 6-34 (49)
153 COG4818 Predicted membrane pro 32.5 4E+02 0.0086 26.2 9.3 88 898-1010 5-92 (105)
154 COG4092 Predicted glycosyltran 32.3 2.4E+02 0.0052 32.4 9.1 90 481-580 61-151 (346)
155 PF11238 DUF3039: Protein of u 32.3 14 0.00031 32.5 -0.1 10 81-90 46-55 (58)
156 PRK14973 DNA topoisomerase I; 31.9 26 0.00057 46.0 2.1 49 37-88 589-644 (936)
157 PF09484 Cas_TM1802: CRISPR-as 30.7 26 0.00057 43.6 1.7 44 33-78 195-254 (593)
158 TIGR01206 lysW lysine biosynth 30.6 35 0.00075 29.8 1.9 14 38-51 4-17 (54)
159 TIGR00143 hypF [NiFe] hydrogen 30.6 37 0.00079 43.4 2.9 57 34-91 66-152 (711)
160 TIGR00595 priA primosomal prot 30.3 21 0.00046 43.6 0.8 43 55-97 212-258 (505)
161 KOG1785 Tyrosine kinase negati 30.3 31 0.00068 40.7 2.1 46 37-90 370-416 (563)
162 PRK12380 hydrogenase nickel in 30.1 18 0.0004 35.6 0.2 27 56-89 70-96 (113)
163 PRK11827 hypothetical protein; 30.0 34 0.00073 30.5 1.8 18 79-96 26-43 (60)
164 TIGR02443 conserved hypothetic 29.7 30 0.00066 30.7 1.4 31 34-65 7-40 (59)
165 PF04123 DUF373: Domain of unk 29.6 3E+02 0.0065 32.5 9.8 52 968-1020 286-338 (344)
166 KOG2824 Glutaredoxin-related p 28.9 33 0.00072 38.9 1.9 22 33-63 226-247 (281)
167 cd00065 FYVE FYVE domain; Zinc 28.9 23 0.00051 29.8 0.6 38 36-77 2-39 (57)
168 PRK00564 hypA hydrogenase nick 28.3 20 0.00044 35.5 0.2 29 56-91 71-100 (117)
169 smart00291 ZnF_ZZ Zinc-binding 28.3 47 0.001 27.3 2.2 34 36-75 4-38 (44)
170 PRK07219 DNA topoisomerase I; 27.9 29 0.00062 45.0 1.4 54 36-92 688-746 (822)
171 PF14354 Lar_restr_allev: Rest 27.7 35 0.00077 29.4 1.5 27 38-64 5-37 (61)
172 PRK14890 putative Zn-ribbon RN 27.6 80 0.0017 28.2 3.6 50 35-87 6-56 (59)
173 PF03071 GNT-I: GNT-I family; 27.5 66 0.0014 38.9 4.2 48 349-401 90-138 (434)
174 PRK09382 ispDF bifunctional 2- 27.3 1.3E+02 0.0029 35.6 6.6 39 501-543 84-122 (378)
175 TIGR00100 hypA hydrogenase nic 27.3 22 0.00048 35.1 0.2 30 56-92 70-99 (115)
176 PF08274 PhnA_Zn_Ribbon: PhnA 27.2 25 0.00054 27.2 0.4 24 38-64 4-27 (30)
177 PF00628 PHD: PHD-finger; Int 27.1 46 0.001 27.5 2.0 45 38-87 1-50 (51)
178 COG1326 Uncharacterized archae 26.5 30 0.00065 37.4 1.0 27 38-64 8-38 (201)
179 PRK06393 rpoE DNA-directed RNA 26.2 31 0.00068 31.1 0.9 23 55-88 4-26 (64)
180 PF04564 U-box: U-box domain; 26.0 60 0.0013 29.3 2.8 45 38-90 6-50 (73)
181 PRK14873 primosome assembly pr 25.9 24 0.00053 44.6 0.3 13 79-91 422-434 (665)
182 KOG0317 Predicted E3 ubiquitin 25.7 66 0.0014 36.8 3.5 49 34-91 237-285 (293)
183 COG0551 TopA Zn-finger domain 25.6 23 0.0005 35.7 0.0 53 34-90 58-112 (140)
184 COG4739 Uncharacterized protei 25.3 39 0.00085 35.1 1.5 44 46-90 78-121 (182)
185 PF12773 DZR: Double zinc ribb 25.2 46 0.001 27.6 1.7 12 36-47 12-23 (50)
186 PF03833 PolC_DP2: DNA polymer 25.0 24 0.00052 45.3 0.0 46 35-91 654-704 (900)
187 PRK14714 DNA polymerase II lar 24.6 34 0.00073 45.8 1.2 48 37-92 668-722 (1337)
188 PF07851 TMPIT: TMPIT-like pro 24.6 1.2E+03 0.026 27.5 15.4 17 880-896 173-189 (330)
189 PRK03681 hypA hydrogenase nick 24.3 24 0.00052 34.8 -0.1 28 56-90 70-98 (114)
190 PF15227 zf-C3HC4_4: zinc fing 24.3 58 0.0012 26.6 2.1 39 39-85 1-42 (42)
191 PF00643 zf-B_box: B-box zinc 24.1 53 0.0012 26.1 1.8 30 36-73 3-32 (42)
192 KOG2177 Predicted E3 ubiquitin 23.7 41 0.00089 35.8 1.5 42 36-86 13-54 (386)
193 COG5220 TFB3 Cdk activating ki 22.9 28 0.00061 38.6 0.0 55 36-93 10-67 (314)
194 PRK11595 DNA utilization prote 22.8 56 0.0012 35.7 2.3 39 36-88 5-43 (227)
195 PF07754 DUF1610: Domain of un 22.8 70 0.0015 23.7 2.0 24 39-64 1-24 (24)
196 COG2835 Uncharacterized conser 22.7 29 0.00062 30.9 0.0 42 56-102 8-49 (60)
197 COG2888 Predicted Zn-ribbon RN 22.6 76 0.0016 28.4 2.5 48 36-86 9-57 (61)
198 PRK15103 paraquat-inducible me 22.5 36 0.00079 40.8 0.8 33 57-92 11-43 (419)
199 COG1198 PriA Primosomal protei 22.4 39 0.00085 43.3 1.1 44 39-95 438-491 (730)
200 PF00265 TK: Thymidine kinase; 22.3 27 0.00058 36.9 -0.3 35 37-71 138-176 (176)
201 PF13717 zinc_ribbon_4: zinc-r 22.1 38 0.00081 27.0 0.6 10 81-90 4-13 (36)
202 COG1645 Uncharacterized Zn-fin 22.0 44 0.00095 34.1 1.2 26 58-90 30-55 (131)
203 PRK03564 formate dehydrogenase 22.0 73 0.0016 36.9 3.1 44 35-87 186-234 (309)
204 PRK04296 thymidine kinase; Pro 21.8 33 0.00071 36.2 0.3 36 37-72 141-186 (190)
205 PF01396 zf-C4_Topoisom: Topoi 21.8 61 0.0013 26.2 1.7 29 37-68 2-31 (39)
206 cd02339 ZZ_Mind_bomb Zinc fing 21.5 76 0.0017 26.6 2.3 30 38-72 2-32 (45)
207 COG1592 Rubrerythrin [Energy p 21.5 42 0.00091 35.5 1.0 29 56-92 134-162 (166)
208 PF13719 zinc_ribbon_5: zinc-r 21.5 39 0.00085 26.9 0.6 11 81-91 4-14 (37)
209 PF01155 HypA: Hydrogenase exp 21.3 35 0.00075 33.6 0.3 30 56-92 70-99 (113)
210 COG5236 Uncharacterized conser 21.1 60 0.0013 37.8 2.1 50 35-92 60-110 (493)
211 smart00744 RINGv The RING-vari 21.1 1.3E+02 0.0029 25.4 3.7 45 38-86 1-49 (49)
212 KOG1039 Predicted E3 ubiquitin 21.0 83 0.0018 37.0 3.3 67 34-101 159-233 (344)
213 PF13248 zf-ribbon_3: zinc-rib 20.9 24 0.00052 26.0 -0.7 13 76-88 13-25 (26)
214 PRK08359 transcription factor; 20.9 35 0.00075 36.4 0.2 35 37-75 7-42 (176)
215 COG5222 Uncharacterized conser 20.9 60 0.0013 37.1 2.0 46 37-89 275-320 (427)
216 COG3813 Uncharacterized protei 20.8 85 0.0018 29.1 2.5 48 38-92 7-54 (84)
217 PF04724 Glyco_transf_17: Glyc 20.7 2.3E+02 0.0049 33.6 6.8 37 500-538 163-199 (356)
218 PRK06319 DNA topoisomerase I/S 20.2 53 0.0012 42.9 1.7 56 35-93 591-659 (860)
219 COG4391 Uncharacterized protei 20.2 40 0.00086 30.2 0.4 17 75-91 44-60 (62)
220 PRK00418 DNA gyrase inhibitor; 20.2 65 0.0014 29.0 1.7 12 92-103 41-52 (62)
No 1
>PLN02436 cellulose synthase A
Probab=100.00 E-value=7.4e-304 Score=2678.05 Aligned_cols=1040 Identities=70% Similarity=1.263 Sum_probs=968.2
Q ss_pred CCCCccccccccCCceEEEeeccCccCCCccCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCC
Q 045222 1 MEVSAGLVAGSHNRNELIIIRRDRESAARPLQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQ 80 (1049)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q 80 (1049)
||+++|||||||||||||+++.|++.++||++++++|+||||||+||+|+| ||+|||||||+|||||||||||||||+|
T Consensus 1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~d-Ge~FVACn~C~fpvCr~Cyeyer~eg~~ 79 (1094)
T PLN02436 1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVD-GEPFVACNECAFPVCRPCYEYERREGNQ 79 (1094)
T ss_pred CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCC-CCEEEeeccCCCccccchhhhhhhcCCc
Confidence 999999999999999999999997667799999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCccccccccCCcccCCCCccccchhhhhhccCCC-CCccccchhhhcccCCCCCcCCCCCCCCC----C--CC--C
Q 045222 81 VCPQCKTRFRRLKGSARVEGDEEEDDIDDLENELNFDG-TDRRQHGAEAMLHDHGGNISYGPASDSYL----P--KV--P 151 (1049)
Q Consensus 81 ~CPqCkt~Ykr~kgsprv~gd~~~~~~~d~e~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~--~ 151 (1049)
+|||||||||||||||||+||||||++||+||||++.+ +++.++++|+|+|++ |+||++.+-.. + +. .
T Consensus 80 ~Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 156 (1094)
T PLN02436 80 ACPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGNNGLDPEQVAEAMLSSR---LNTGRHSNVSGIATPSELDSAPP 156 (1094)
T ss_pred cCcccCCchhhccCCCCcCCccccccchhhhhhhcCcccccchHHHHHHHhhhh---cccCccccccccccccccccCCC
Confidence 99999999999999999999999999999999999873 333477899999998 99998865111 1 12 1
Q ss_pred CCCCCcccCCCcCCCCCccccc-ccCCcCCCCcccccCCCCCC---CCCCCCCCCcCcccCCCCccccchhhHHHHHHHH
Q 045222 152 LPQVPMLTNGQLVDDTPHEQRA-LVPSFMGGGKRIHPFPYSDP---VQPRSLDPSKDLAAYGYGSVAWKERVENWKQKQE 227 (1049)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~ 227 (1049)
.+++|++++||.++|++++|++ ++++.+|.||||||+||+|+ .+++.+||+||+++|||||++||||||+||+||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~ 236 (1094)
T PLN02436 157 GSQIPLLTYGEEDVEISSDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQN 236 (1094)
T ss_pred cCCCcccccCcccCccCCcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhh
Confidence 2467999999988999855655 47787888999999999996 7889999999999999999999999999999997
Q ss_pred hhh-cccCCC--CCCCCC-CCCCCCCcccccccCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccccchhHH
Q 045222 228 KLQ-SLNNDT--GGKDWG-YNIDAPDFPLMDEARQPLSRKIPIPSSQINPYRMIVIIRLVVLGFFFHYRVMHPVKDAYAL 303 (1049)
Q Consensus 228 ~~~-~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~iv~~lv~l~~yl~wRi~~~~~~a~~l 303 (1049)
|+. ++.+.. ...+.+ ++.+++|++++|++++||+||+++++++|+|||++++++++++++||+||++|++.+++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~ 316 (1094)
T PLN02436 237 EKLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGL 316 (1094)
T ss_pred hcccccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHH
Confidence 433 333321 112221 3334678888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhccCCCCCCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCC
Q 045222 304 WVISVICEVWFALSWILDQFPKWLPIDRETYLDRLSLRYEKPGQPSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDY 383 (1049)
Q Consensus 304 Wl~~~i~Eiwfa~~wiL~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDY 383 (1049)
|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+||.||||++|+|||||+||+||
T Consensus 317 Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DY 396 (1094)
T PLN02436 317 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDY 396 (1094)
T ss_pred HHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCChhhHHHhhhhHHHhhhC----------CCCchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 045222 384 PVDKVSCYVSDDGAAMLTFEALSETSEFARKW----------PRAPEWYFAQKIDYLKDKVLASFVRERRAMKREYEQFK 453 (1049)
Q Consensus 384 P~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~W----------pr~Pe~YF~~k~~~lk~~~~~~fv~err~~kr~yee~k 453 (1049)
|++||+|||||||++++|||||.||++|||+| ||+||+||++|.+++++|++++|++|||+|||||||||
T Consensus 397 P~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K 476 (1094)
T PLN02436 397 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFK 476 (1094)
T ss_pred cccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh---------------------------hhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHH
Q 045222 454 VRINALVAKAQI---------------------------IFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNA 506 (1049)
Q Consensus 454 vRIn~l~~~a~k---------------------------v~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~ 506 (1049)
+|||+|++++++ |+|+++|+.|.+|++||+||||||||||||+||+||||||+
T Consensus 477 ~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNa 556 (1094)
T PLN02436 477 VKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNS 556 (1094)
T ss_pred HHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhh
Confidence 999999986332 88999988999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhhhhHhhhcccccc
Q 045222 507 LVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDINMKGLDG 586 (1049)
Q Consensus 507 ~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg 586 (1049)
++||||++||||||||||||||+|||+++|++|||||||+.|+++|||||||+|+|+|++|||+||++||||++|+|+||
T Consensus 557 LlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDG 636 (1094)
T PLN02436 557 LIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG 636 (1094)
T ss_pred hhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccc
Q 045222 587 IQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEG 666 (1049)
Q Consensus 587 ~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1049)
+|||+||||||+|||+||||++||...+.+...++||+.||| +||+.|+++++..+... ++.+......+++++++
T Consensus 637 lqGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 712 (1094)
T PLN02436 637 IQGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCC---LCCGSRKKKKKKKSKEK-KKKKNREASKQIHALEN 712 (1094)
T ss_pred CCCccccccCceeeeeeeeccCCccccccccccccccccccc---ccccccccccccccccc-ccccccccccccccccc
Confidence 999999999999999999999999877766667889999997 47777776443221111 11101122457888999
Q ss_pred hhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccc
Q 045222 667 IEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSV 746 (1049)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsv 746 (1049)
++++++++++|++..+++++++++||+|++|++|++++.||.+...+++++++||+|||||+||++|+||+||||+|||+
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSv 792 (1094)
T PLN02436 713 IEEGIEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSV 792 (1094)
T ss_pred cccccccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccce
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhhhHhHHhhh
Q 045222 747 TKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLERLSYINAC 826 (1049)
Q Consensus 747 TEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QRL~Yl~s~ 826 (1049)
|||+.||++||++||||+||+|.++||.|+||+|+.++++||+|||+|++|||++|+||+|||+.++|+|+||++|++++
T Consensus 793 TEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ 872 (1094)
T PLN02436 793 TEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSV 872 (1094)
T ss_pred ecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887899999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhCCcchhhchHHHHHHHHHHHHHHHHHhhhheeeccccccccccchhHHHhhhhhhHHH
Q 045222 827 LYPFTSIPLLVYCALPAVCLLTGKFITPELTAVAGLYFMSLFMCIFATSILEMRWSGVGIDEWWRNEQFWVIGGISAHPV 906 (1049)
Q Consensus 827 ly~l~sl~~liylllP~l~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsGvsi~~wWr~e~~W~I~~~sa~Lf 906 (1049)
+||++++++++|+++|++||++|++++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|+++|+|+|
T Consensus 873 ly~l~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lf 952 (1094)
T PLN02436 873 VYPWTSIPLIVYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLF 952 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCeEeccCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 045222 907 AVFQGLLKVLAGVDTDFTVTSKAGDVEAFSELYAFKWTTLLIPPTTLLIINLVGMVAGVSNAINNGHESWGLLFGKLFFA 986 (1049)
Q Consensus 907 Av~~aLlkvl~g~~~~F~VT~K~~~~~~~~~ly~f~wt~l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~~l~g~l~~~ 986 (1049)
|++++++|+|+|++++|+||+|..+++.++++|+|+||++++|++|++++|++|+++|+++++++++++|+++++++||+
T Consensus 953 avl~~iLKvLggs~~~F~VTsK~~d~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~ 1032 (1094)
T PLN02436 953 ALFQGLLKVLAGVNTNFTVTSKAADDGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFA 1032 (1094)
T ss_pred HHHHHHHHHhccCcccceecccccccccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 99999999999999999999999887778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCccchhHHHHHHHHHHHHHhheeeecCCCcCCCCCccccccCCCC
Q 045222 987 LWVIIHLFPFLKGLIGRHNRISTIVVVWSILLASIFSLLWIRIDPFFAKPDGPLLEECGLDCH 1049 (1049)
Q Consensus 987 ~Wvi~~l~Pf~~gL~gR~~~~P~~v~~~s~~la~~~~llwv~i~~~~~~~~~~~~~~~~~~~~ 1049 (1049)
+||++|+|||+||||||++|+||||++||++||++||||||+||||+++ +||++++||++|+
T Consensus 1033 ~wvvv~lyPf~kgL~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~-~~~~~~~~~~~~~ 1094 (1094)
T PLN02436 1033 LWVIVHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVSK-GGPVLEICGLDCD 1094 (1094)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeeccccCC-CCccccccCccCC
Confidence 9999999999999999999999999999999999999999999999999 9999999999996
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=3.9e-302 Score=2673.49 Aligned_cols=1024 Identities=66% Similarity=1.179 Sum_probs=939.2
Q ss_pred CCCCccccccccCCceEEEeeccCccCCCccCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCC
Q 045222 1 MEVSAGLVAGSHNRNELIIIRRDRESAARPLQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQ 80 (1049)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q 80 (1049)
||+++|||||||||||||+|+.|++.++||++++++|+||||||+||+|+| ||+|||||||||||||||||||||||+|
T Consensus 1 ~~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~d-Ge~FVAC~eCaFPVCRpCYEYERkeGnq 79 (1085)
T PLN02400 1 MEANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTET-GDVFVACNECAFPVCRPCYEYERKDGTQ 79 (1085)
T ss_pred CCCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCC-CCEEEEEccCCCccccchhheecccCCc
Confidence 999999999999999999999998777899999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCccccccccCCcccCCCCccccchhhhhhccCCCCCcc--ccchhhhcccCCCCCcCCCCCC-CCCCCCCCCCCCc
Q 045222 81 VCPQCKTRFRRLKGSARVEGDEEEDDIDDLENELNFDGTDRR--QHGAEAMLHDHGGNISYGPASD-SYLPKVPLPQVPM 157 (1049)
Q Consensus 81 ~CPqCkt~Ykr~kgsprv~gd~~~~~~~d~e~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 157 (1049)
+|||||||||||||||||+|||||||+||+||||+|...+++ ++.+ |++.+ ......+.+++|+
T Consensus 80 ~CPQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~p~ 146 (1085)
T PLN02400 80 CCPQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKARHQWQ-------------GEDIELSSSSRHESQPIPL 146 (1085)
T ss_pred cCcccCCccccccCCCCCCcccccccchhhhhhhcccccccccccccc-------------ccCccccCcccccCCCCcc
Confidence 999999999999999999999999999999999998643221 2211 22221 0000011257899
Q ss_pred ccCCC-cCCCCC---cccccccCCcC---CCCcccccCCCCCC---CCCCCCCCCcCcccCCCCccccchhhHHHHHHHH
Q 045222 158 LTNGQ-LVDDTP---HEQRALVPSFM---GGGKRIHPFPYSDP---VQPRSLDPSKDLAAYGYGSVAWKERVENWKQKQE 227 (1049)
Q Consensus 158 ~~~~~-~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~ 227 (1049)
||+|| +++|++ ++|+++.++++ |.||||||+||+|| ++++.+||+||+++|||||++||||||+||+||+
T Consensus 147 lt~g~~~s~ei~~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~ 226 (1085)
T PLN02400 147 LTHGQPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQD 226 (1085)
T ss_pred ccCCcccCCCCCCCCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHHhhhh
Confidence 99998 688996 56667666543 44799999999996 7789999999999999999999999999999996
Q ss_pred hhhcc--cCC--CCCCCC-CCCCCCCCcccccccCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccccchhH
Q 045222 228 KLQSL--NND--TGGKDW-GYNIDAPDFPLMDEARQPLSRKIPIPSSQINPYRMIVIIRLVVLGFFFHYRVMHPVKDAYA 302 (1049)
Q Consensus 228 ~~~~~--~~~--~~~~~~-~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~iv~~lv~l~~yl~wRi~~~~~~a~~ 302 (1049)
|++.. .+. +...+. +++.+++|+++||++++||+||+++++++|+|||++++++++++++||+||++|++.+++|
T Consensus 227 k~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~ 306 (1085)
T PLN02400 227 KNMMQMTNKYHEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYG 306 (1085)
T ss_pred hhccccccccccccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHH
Confidence 54332 221 111122 1223467889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhccCCCCCCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCC
Q 045222 303 LWVISVICEVWFALSWILDQFPKWLPIDRETYLDRLSLRYEKPGQPSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVD 382 (1049)
Q Consensus 303 lWl~~~i~Eiwfa~~wiL~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalD 382 (1049)
+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+||.||||++|+|||||+||+|
T Consensus 307 ~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~D 386 (1085)
T PLN02400 307 LWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVD 386 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhC----------CCCchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 045222 383 YPVDKVSCYVSDDGAAMLTFEALSETSEFARKW----------PRAPEWYFAQKIDYLKDKVLASFVRERRAMKREYEQF 452 (1049)
Q Consensus 383 YP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~W----------pr~Pe~YF~~k~~~lk~~~~~~fv~err~~kr~yee~ 452 (1049)
||++||+|||||||++++|||||.||++|||+| ||+||+||++|.++++|+.+|+|++|||+||||||||
T Consensus 387 YP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~ 466 (1085)
T PLN02400 387 YPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEF 466 (1085)
T ss_pred ccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---------------------------hhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHH
Q 045222 453 KVRINALVAKAQI---------------------------IFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMN 505 (1049)
Q Consensus 453 kvRIn~l~~~a~k---------------------------v~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN 505 (1049)
|+|||+|++++++ |+|+++|+.|.+|++||+||||||||||||+||+||||||
T Consensus 467 k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMN 546 (1085)
T PLN02400 467 KVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMN 546 (1085)
T ss_pred HHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhH
Confidence 9999999976554 8899999889999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhhhhHhhhccccc
Q 045222 506 ALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDINMKGLD 585 (1049)
Q Consensus 506 ~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glD 585 (1049)
+++||||++||||||||||||||+|||+++|++|||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+|
T Consensus 547 aLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~Gld 626 (1085)
T PLN02400 547 ALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLD 626 (1085)
T ss_pred HHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccchhhhhhhcCCCCCCCCCC--CCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhh--cccCCcc
Q 045222 586 GIQGPINVGTGCVFRRQAFYGYDAPKTKKS--PTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFA--MKDTAPM 661 (1049)
Q Consensus 586 g~qgp~yvGTgcvfRR~ALyg~~p~~~~~~--~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~--~~~~~~~ 661 (1049)
|+|||+||||||+|||+||||++||..++. +... +| +||+.|+++++.+....+.++.. ...+.++
T Consensus 627 GlqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1085)
T PLN02400 627 GIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNII--------VK--SCCGSRKKGKGSKKYNIDKKRAMKRTESNVPI 696 (1085)
T ss_pred cCCCccccccCcceeeeeeccCCCcccccccccccc--------cc--cccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999865432 2221 11 46666665433211111111111 1236689
Q ss_pred ccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccccccc
Q 045222 662 CAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGW 741 (1049)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW 741 (1049)
++++++++|+++++++++..+++++++++||+|++|++|++++.||.+...+++++++||+|||||+||++|+||+||||
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGw 776 (1085)
T PLN02400 697 FNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGW 776 (1085)
T ss_pred ccccccccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCe
Confidence 99999999999999999889999999999999999999999999999988899999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhhhHh
Q 045222 742 IYGSVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLERLS 821 (1049)
Q Consensus 742 ~ygsvTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QRL~ 821 (1049)
+|||+|||+.||++||++||||+||+|+++||.|+||+|+.++++||+|||+|++|||++||||+++|+.++|+++||++
T Consensus 777 iYGSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~ 856 (1085)
T PLN02400 777 IYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLA 856 (1085)
T ss_pred eccceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988778999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhhchHHHHHHHHHHHHHHHHHhhhheeeccccccccccchhHHHhhhh
Q 045222 822 YINACLYPFTSIPLLVYCALPAVCLLTGKFITPELTAVAGLYFMSLFMCIFATSILEMRWSGVGIDEWWRNEQFWVIGGI 901 (1049)
Q Consensus 822 Yl~s~ly~l~sl~~liylllP~l~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsGvsi~~wWr~e~~W~I~~~ 901 (1049)
|+++++|||+++++++|+++|++||++|++++|.++++++++|+++|+++++++++|++|+|+++++||||||||+|+++
T Consensus 857 Yl~~~~y~~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~ 936 (1085)
T PLN02400 857 YINTIVYPITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGT 936 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCeEeccCCCCc-cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhH
Q 045222 902 SAHPVAVFQGLLKVLAGVDTDFTVTSKAGDV-EAFSELYAFKWTTLLIPPTTLLIINLVGMVAGVSNAINNGHESWGLLF 980 (1049)
Q Consensus 902 sa~LfAv~~aLlkvl~g~~~~F~VT~K~~~~-~~~~~ly~f~wt~l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~~l~ 980 (1049)
|+|+||++++++|+|+|++++|+||+|..++ +.++++|+|+||+|++|++|++++|++|+++|+++++++++++|++++
T Consensus 937 Sa~Lfavl~~ilKvLgg~~~~F~VTsK~~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~ 1016 (1085)
T PLN02400 937 SAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLF 1016 (1085)
T ss_pred HHHHHHHHHHHHHHhcCCcccceecCCcccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 9999999999999999999999999998764 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCccchhHHHHHHHHHHHHHhheeeecCCCcCCCCC-ccccccCCC
Q 045222 981 GKLFFALWVIIHLFPFLKGLIGRHNRISTIVVVWSILLASIFSLLWIRIDPFFAKPDGP-LLEECGLDC 1048 (1049)
Q Consensus 981 g~l~~~~Wvi~~l~Pf~~gL~gR~~~~P~~v~~~s~~la~~~~llwv~i~~~~~~~~~~-~~~~~~~~~ 1048 (1049)
+++||++||++|+|||+||||||++|+||||++||++||++||||||+|+||+++++|| ++++||++|
T Consensus 1017 ~~~~~~~wvvv~l~Pf~kgL~gR~~r~P~~v~~~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1017 GKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFVSDTTKAAANGQCGVNC 1085 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHheeccccccCCCCchhHhhcCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999 899999999
No 3
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=1.2e-290 Score=2573.11 Aligned_cols=1008 Identities=68% Similarity=1.201 Sum_probs=920.2
Q ss_pred ccCccCCCccCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccccCCcccCCC
Q 045222 22 RDRESAARPLQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRLKGSARVEGD 101 (1049)
Q Consensus 22 ~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kgsprv~gd 101 (1049)
.|++.++||++++++|+||||||+||+|+| ||+|||||||||||||||||||||||+|+|||||||||||||||||+||
T Consensus 3 ~~~~~~~k~~~~~~~qiCqICGD~vg~~~~-Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gD 81 (1079)
T PLN02638 3 SEGETGAKPMKHGGGQVCQICGDNVGKTVD-GEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGD 81 (1079)
T ss_pred CCCCCCCCCccccCCceeeecccccCcCCC-CCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCcc
Confidence 356667789999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred Ccccc-chhhhhhccCCCC--CccccchhhhcccCCCCCcCCCCCC----CCCCCCCCCCCCcccCCC-cCCCCC---cc
Q 045222 102 EEEDD-IDDLENELNFDGT--DRRQHGAEAMLHDHGGNISYGPASD----SYLPKVPLPQVPMLTNGQ-LVDDTP---HE 170 (1049)
Q Consensus 102 ~~~~~-~~d~e~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~---~~ 170 (1049)
||||+ +||+||||+|... +..++++|+|+|++ |+||++.| +++.+.+.+++|+||+|| +++|++ ++
T Consensus 82 eeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 158 (1079)
T PLN02638 82 EEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWR---MNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPE 158 (1079)
T ss_pred ccccCcchhhhhhhccccccccchhHHHHHHhhhh---cccCcCcccccccccccCCCCCCcccccCccccCccCCCCCc
Confidence 88886 8999999998632 23477889999998 99999866 122222335789999999 578885 45
Q ss_pred cccccCCcCCCCcccccCCCCCC----CCCCCCCCCcCcccCCCCccccchhhHHHHHHHHhhhc--ccCC------C-C
Q 045222 171 QRALVPSFMGGGKRIHPFPYSDP----VQPRSLDPSKDLAAYGYGSVAWKERVENWKQKQEKLQS--LNND------T-G 237 (1049)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~--~~~~------~-~ 237 (1049)
|++++++.+ .|||| ||+|+ .++|.|||+||+++|||||++||||||+||.||+|++. +.+. | +
T Consensus 159 ~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~ 234 (1079)
T PLN02638 159 RLSMASPGA-GGKRI---PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGG 234 (1079)
T ss_pred cccccCccc-cCCcc---cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcC
Confidence 666666544 57998 88885 67899999999999999999999999999999965433 2221 1 1
Q ss_pred CCCCCCCCCCCCcccccccCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHH
Q 045222 238 GKDWGYNIDAPDFPLMDEARQPLSRKIPIPSSQINPYRMIVIIRLVVLGFFFHYRVMHPVKDAYALWVISVICEVWFALS 317 (1049)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~iv~~lv~l~~yl~wRi~~~~~~a~~lWl~~~i~Eiwfa~~ 317 (1049)
+.+.+++.+++|+++|+++++||+||+++++++|+|||++++++++++++||+||++|++.+++|+|+++++||+||+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~ 314 (1079)
T PLN02638 235 DIDASTDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALS 314 (1079)
T ss_pred CCCCccccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence 22211222367899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccccccchhhhhhhhccCCCCCCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCC
Q 045222 318 WILDQFPKWLPIDRETYLDRLSLRYEKPGQPSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGA 397 (1049)
Q Consensus 318 wiL~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~ 397 (1049)
|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+||.||||++|+|||||+||+|||++||+|||||||+
T Consensus 315 Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGg 394 (1079)
T PLN02638 315 WILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGA 394 (1079)
T ss_pred HHHhccccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCc
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhhhHHHhhhC----------CCCchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 045222 398 AMLTFEALSETSEFARKW----------PRAPEWYFAQKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQI-- 465 (1049)
Q Consensus 398 s~~Tf~al~Ea~~fA~~W----------pr~Pe~YF~~k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~k-- 465 (1049)
+++|||||.||++|||+| ||+||+||++|.+++|++.+|+|++|||+|||||||||+|||++++++++
T Consensus 395 S~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p 474 (1079)
T PLN02638 395 AMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVP 474 (1079)
T ss_pred hHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 999999999999999999 99999999999999999999999999999999999999999999977653
Q ss_pred -------------------------hhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCCCCCEE
Q 045222 466 -------------------------IFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLTNSPYL 520 (1049)
Q Consensus 466 -------------------------v~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~tng~~I 520 (1049)
|+++++|+.|.+|++||+||||||||||||+||+||||||+++||||++||||||
T Consensus 475 ~~~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfI 554 (1079)
T PLN02638 475 EEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFL 554 (1079)
T ss_pred CccccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeE
Confidence 8899999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhhhhHhhhccccccCCCcccccccchhh
Q 045222 521 LNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDINMKGLDGIQGPINVGTGCVFR 600 (1049)
Q Consensus 521 l~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~qgp~yvGTgcvfR 600 (1049)
||||||||+|||++||++||||+||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+||
T Consensus 555 LNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fR 634 (1079)
T PLN02638 555 LNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFN 634 (1079)
T ss_pred eecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCC--CCCCcCCCCCCCcCCCCcccCccccc-ccCCCchhhhhh--hhcccCCccccccchhccccc--
Q 045222 601 RQAFYGYDAPKTKK--SPTRTSKCLPKWCCSGHCCSGRRRKK-KINRPKSEIKKK--FAMKDTAPMCAWEGIEEGIEG-- 673 (1049)
Q Consensus 601 R~ALyg~~p~~~~~--~~~~~~~~~~~~~~~~~~c~~~r~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-- 673 (1049)
|+||||++||+..+ .|... + +||+..+++ ++.+++...++. +....+.+++++++++++.++
T Consensus 635 R~ALYG~~p~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1079)
T PLN02638 635 RTALYGYEPPIKPKHKKPGFL--------S---SLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAG 703 (1079)
T ss_pred ehhhcCcCCcccccccccccc--------c---ccccccccccccccchhhccccccccccccccccccccccccccccc
Confidence 99999999987532 22221 1 344443322 221111111110 011124567788888888775
Q ss_pred cccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHH
Q 045222 674 AEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLTG 753 (1049)
Q Consensus 674 ~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~Tg 753 (1049)
++++++.+++++.++++||+|++|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+|||+|||+.||
T Consensus 704 ~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG 783 (1079)
T PLN02638 704 FDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTG 783 (1079)
T ss_pred cchhhhhhhhhhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHH
Confidence 55677788999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhhhHhHHhhhhhhhhHH
Q 045222 754 LIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLERLSYINACLYPFTSI 833 (1049)
Q Consensus 754 ~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QRL~Yl~s~ly~l~sl 833 (1049)
++||++||||+|++|.++||.|+||+|+.++++||+|||+|++||+++|+||+++|+.++|+++||++|+++++||++++
T Consensus 784 ~rLH~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~si 863 (1079)
T PLN02638 784 FKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSI 863 (1079)
T ss_pred HHHHcCCCcEEecCCCchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcchhhchHHHHHHHHHHHHHHHHHhhhheeeccccccccccchhHHHhhhhhhHHHHHHHHHH
Q 045222 834 PLLVYCALPAVCLLTGKFITPELTAVAGLYFMSLFMCIFATSILEMRWSGVGIDEWWRNEQFWVIGGISAHPVAVFQGLL 913 (1049)
Q Consensus 834 ~~liylllP~l~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsGvsi~~wWr~e~~W~I~~~sa~LfAv~~aLl 913 (1049)
++++|+++|++||++|++++|.++++++++|+++|+++++++++|++|+|+++++||||||||+|+++|+|+||++++++
T Consensus 864 p~liY~llP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iL 943 (1079)
T PLN02638 864 PLLLYCTLPAVCLLTGKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLL 943 (1079)
T ss_pred HHHHHHHHHHHHHHcCCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCeEeccCCCCc-cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHH
Q 045222 914 KVLAGVDTDFTVTSKAGDV-EAFSELYAFKWTTLLIPPTTLLIINLVGMVAGVSNAINNGHESWGLLFGKLFFALWVIIH 992 (1049)
Q Consensus 914 kvl~g~~~~F~VT~K~~~~-~~~~~ly~f~wt~l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~~l~g~l~~~~Wvi~~ 992 (1049)
|+|+|++++|+||+|..++ +.++++|+|+||++|||++||+++|++|+++|+++++++++++|+++++++||++||++|
T Consensus 944 K~Lggs~~~F~VTsK~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~ 1023 (1079)
T PLN02638 944 KVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVH 1023 (1079)
T ss_pred HHHccCcccceeccccccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHH
Confidence 9999999999999998764 468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCccchhHHHHHHHHHHHHHhheeeecCCCcCCCCCccccccCCC
Q 045222 993 LFPFLKGLIGRHNRISTIVVVWSILLASIFSLLWIRIDPFFAKPDGPLLEECGLDC 1048 (1049)
Q Consensus 993 l~Pf~~gL~gR~~~~P~~v~~~s~~la~~~~llwv~i~~~~~~~~~~~~~~~~~~~ 1048 (1049)
+|||+||||||++|+||||++||++|+++||||||+|+||+++++||.+++||++|
T Consensus 1024 l~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1024 LYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred HHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999
No 4
>PLN02189 cellulose synthase
Probab=100.00 E-value=2e-284 Score=2513.15 Aligned_cols=993 Identities=68% Similarity=1.213 Sum_probs=917.7
Q ss_pred CCCCccccccccCCceEEEeeccCccCCCccCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCC
Q 045222 1 MEVSAGLVAGSHNRNELIIIRRDRESAARPLQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQ 80 (1049)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q 80 (1049)
||+++||+||||||||||+++.| + +.||++++++|+||||||+||+|+| ||+|||||||+|||||||||||||||+|
T Consensus 1 ~~~~~g~~~gs~~r~~~~~~~~~-~-~~k~~~~~~~~~C~iCgd~vg~~~~-g~~fvaC~~C~fpvCr~Cyeyer~eg~q 77 (1040)
T PLN02189 1 MEASAGLVAGSHNRNELVVIHGH-E-EPKPLRNLDGQVCEICGDEIGLTVD-GDLFVACNECGFPVCRPCYEYERREGTQ 77 (1040)
T ss_pred CCcccccccccccccceeeeccc-c-CCCCcccccCccccccccccCcCCC-CCEEEeeccCCCccccchhhhhhhcCCc
Confidence 99999999999999999999977 3 4588999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCccccccccCCcccCCCCccccchhhhhhccCCCC-CccccchhhhcccCCCCCcCCCCCCCCCCCCCCCCCCccc
Q 045222 81 VCPQCKTRFRRLKGSARVEGDEEEDDIDDLENELNFDGT-DRRQHGAEAMLHDHGGNISYGPASDSYLPKVPLPQVPMLT 159 (1049)
Q Consensus 81 ~CPqCkt~Ykr~kgsprv~gd~~~~~~~d~e~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1049)
+|||||||||||||||||+|||||||+||+||||+|... ++.++++|+|++++ ++||++.+. ..+.+++|+++
T Consensus 78 ~CpqCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~ 151 (1040)
T PLN02189 78 NCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDEQDKNKHITEAMLHGK---MSYGRGPDD---DENNQFPPVIT 151 (1040)
T ss_pred cCcccCCchhhccCCCCcCCccccccchhhhhhccccccccchhHHHHHHhhhh---cccCCCccc---CCCcCCCcccc
Confidence 999999999999999999999999999999999998643 33477899999988 999988761 12235789999
Q ss_pred CCC---cCCCCCc-----ccccccCCcCCCCcccccCCCCCCCCCCCCCCCcCcccCCCCccccchhhHHHHHHHHhhhc
Q 045222 160 NGQ---LVDDTPH-----EQRALVPSFMGGGKRIHPFPYSDPVQPRSLDPSKDLAAYGYGSVAWKERVENWKQKQEKLQS 231 (1049)
Q Consensus 160 ~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~ 231 (1049)
+|| +++|+++ +|+++.++. .||+|||+||+| .+++.|||+||++ ||||||+||+||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~--------wk~rv~~wk~~~~~--- 217 (1040)
T PLN02189 152 GVRSRPVSGEFPIGSGYGHGEQMLSSS--LHKRVHPYPVSE-PGSAKWDEKKEGG--------WKERMDDWKMQQGN--- 217 (1040)
T ss_pred cCccccccCCcCccccccccccccCCc--ccCccCcccccC-CCcccCCcccccc--------HHHHHHHHHhhccc---
Confidence 987 5788864 555666653 589999999998 5778999999975 99999999999961
Q ss_pred ccCCCCCCCCCCCCCCCCcccccccCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHH
Q 045222 232 LNNDTGGKDWGYNIDAPDFPLMDEARQPLSRKIPIPSSQINPYRMIVIIRLVVLGFFFHYRVMHPVKDAYALWVISVICE 311 (1049)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~iv~~lv~l~~yl~wRi~~~~~~a~~lWl~~~i~E 311 (1049)
.++ +++.+++|+++++++++||+||+++++++|+|||++++++++++++||+||++|++.+++|+|+++++||
T Consensus 218 ---~~~----~~~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E 290 (1040)
T PLN02189 218 ---LGP----DPDDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICE 290 (1040)
T ss_pred ---CCC----CCCCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHH
Confidence 111 1223356778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccccccccchhhhhhhhccCCCCCCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEE
Q 045222 312 VWFALSWILDQFPKWLPIDRETYLDRLSLRYEKPGQPSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCY 391 (1049)
Q Consensus 312 iwfa~~wiL~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vy 391 (1049)
+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+||.||||++|+|||||+||+|||++||+||
T Consensus 291 ~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscY 370 (1040)
T PLN02189 291 IWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCY 370 (1040)
T ss_pred HHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEE
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred EEcCCCChhhHHHhhhhHHHhhhC----------CCCchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045222 392 VSDDGAAMLTFEALSETSEFARKW----------PRAPEWYFAQKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVA 461 (1049)
Q Consensus 392 V~DDG~s~~Tf~al~Ea~~fA~~W----------pr~Pe~YF~~k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~ 461 (1049)
|||||++++|||||.||++|||+| ||+||+||++|.++++++.+++|++|||+||+||||||+|||++++
T Consensus 371 vSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a 450 (1040)
T PLN02189 371 VSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVA 450 (1040)
T ss_pred EecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999997
Q ss_pred HHHh---------------------------hhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCC
Q 045222 462 KAQI---------------------------IFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVL 514 (1049)
Q Consensus 462 ~a~k---------------------------v~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~ 514 (1049)
++.+ |+++++|+.|.+|++||+|||||||||||++||+||||||+++||||++
T Consensus 451 ~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavm 530 (1040)
T PLN02189 451 KAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVL 530 (1040)
T ss_pred hcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhc
Confidence 6553 8899988889999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhhhhHhhhccccccCCCccccc
Q 045222 515 TNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDINMKGLDGIQGPINVG 594 (1049)
Q Consensus 515 tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~qgp~yvG 594 (1049)
||||||||||||||+|||++||++||||+||+.|+++|||||||+|+|+|++|||+|++++|||++|+|+||+|||+|||
T Consensus 531 TNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvG 610 (1040)
T PLN02189 531 TNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVG 610 (1040)
T ss_pred cCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccchhcccccc
Q 045222 595 TGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGIEEGIEGA 674 (1049)
Q Consensus 595 TgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1049)
|||+|||+||||++||+..+.+...+ ++| +||..++++++.+ .. .....++++++
T Consensus 611 TGC~fRR~ALyG~~p~~~~~~~~~~~------~~~--~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~ 665 (1040)
T PLN02189 611 TGCVFRRQALYGYDPPKGPKRPKMVT------CDC--CPCFGRRKKKHAK-NG----------------LNGEVAALGGM 665 (1040)
T ss_pred cCceeeeeeeeccCcccccccccccc------cch--hhhcccccccccc-cc----------------ccccccccccc
Confidence 99999999999999987655444322 111 3444333221100 00 00011334455
Q ss_pred ccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHH
Q 045222 675 EGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLTGL 754 (1049)
Q Consensus 675 ~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~Tg~ 754 (1049)
+++++..+++++++++||+|.+|++|++.+.+|.+..+.++++++||++|+||+||++|+||+||||+|||+|||+.||+
T Consensus 666 ~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~TG~ 745 (1040)
T PLN02189 666 ESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGF 745 (1040)
T ss_pred chhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHHHHH
Confidence 66666778899999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred HHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccC-CCCChhhhHhHHhhhhhhhhHH
Q 045222 755 IMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYG-GGLKWLERLSYINACLYPFTSI 833 (1049)
Q Consensus 755 rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~-~~Ltl~QRL~Yl~s~ly~l~sl 833 (1049)
+||++||||+||+|+++||.|+||+|+.++++||+|||+|++|||++|+||+++|+. ++|+++||++|+++++||++++
T Consensus 746 rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly~~~si 825 (1040)
T PLN02189 746 KMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIYPFTSL 825 (1040)
T ss_pred HHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998864 6799999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcchhhchHHHHHHHHHHHHHHHHHhhhheeeccccccccccchhHHHhhhhhhHHHHHHHHHH
Q 045222 834 PLLVYCALPAVCLLTGKFITPELTAVAGLYFMSLFMCIFATSILEMRWSGVGIDEWWRNEQFWVIGGISAHPVAVFQGLL 913 (1049)
Q Consensus 834 ~~liylllP~l~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsGvsi~~wWr~e~~W~I~~~sa~LfAv~~aLl 913 (1049)
++++|+++|++||++|++++|.++++++++|+++|++++++.++|++|+|+++++||||||||+|+++|+|+||++++++
T Consensus 826 p~liY~~lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfavl~~il 905 (1040)
T PLN02189 826 PLLAYCTLPAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLL 905 (1040)
T ss_pred HHHHHHHHHHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCeEeccCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHH
Q 045222 914 KVLAGVDTDFTVTSKAGDVEAFSELYAFKWTTLLIPPTTLLIINLVGMVAGVSNAINNGHESWGLLFGKLFFALWVIIHL 993 (1049)
Q Consensus 914 kvl~g~~~~F~VT~K~~~~~~~~~ly~f~wt~l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~~l~g~l~~~~Wvi~~l 993 (1049)
|+|+|++++|.||+|..++++++++|+|+||++|||++||+++|++|+++|+++++++++++|+++++++||++|+++|+
T Consensus 906 Kvlggs~~~F~VTsK~~~d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~wvv~~~ 985 (1040)
T PLN02189 906 KVLAGIDTNFTVTSKATDDDEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHL 985 (1040)
T ss_pred HHhccCcccceeccccccccccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHH
Confidence 99999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCccchhHHHHHHHHHHHHHhheeeecCCCcCCCCCccccccCCC
Q 045222 994 FPFLKGLIGRHNRISTIVVVWSILLASIFSLLWIRIDPFFAKPDGPLLEECGLDC 1048 (1049)
Q Consensus 994 ~Pf~~gL~gR~~~~P~~v~~~s~~la~~~~llwv~i~~~~~~~~~~~~~~~~~~~ 1048 (1049)
|||+||||||++|+||||++||++|+++||||||+|+||+++.+||.+++||++|
T Consensus 986 ~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1040 (1040)
T PLN02189 986 YPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDVKQCGINC 1040 (1040)
T ss_pred HHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 9999999999999999999999999999999999999999999999999999999
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=3e-280 Score=2477.59 Aligned_cols=970 Identities=66% Similarity=1.225 Sum_probs=894.4
Q ss_pred cCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccccCCcccCCC-Cccccchh
Q 045222 31 LQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRLKGSARVEGD-EEEDDIDD 109 (1049)
Q Consensus 31 ~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kgsprv~gd-~~~~~~~d 109 (1049)
-+..++|+||||||+||+|+| ||+|||||||+|||||||||||||||+|+|||||||||||||||||+|| |||+++||
T Consensus 10 ~~~~~~~~c~iCGd~vg~~~~-Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd 88 (1044)
T PLN02915 10 RQSADAKTCRVCGDEVGVKED-GQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDD 88 (1044)
T ss_pred ccCCCcchhhccccccCcCCC-CCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchh
Confidence 367899999999999999999 9999999999999999999999999999999999999999999999999 56788999
Q ss_pred hhhhccCCCCCccccchhhhcccCCCCCcCCCCCCCCCCCCCCCCCCcccCCCcCCCCCcccccccCCcCCCCcccccCC
Q 045222 110 LENELNFDGTDRRQHGAEAMLHDHGGNISYGPASDSYLPKVPLPQVPMLTNGQLVDDTPHEQRALVPSFMGGGKRIHPFP 189 (1049)
Q Consensus 110 ~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1049)
+||||++...+++ +.|++++ +++|++.+...++ +.+++|++++ ++|++
T Consensus 89 ~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~--------------------- 136 (1044)
T PLN02915 89 FEDEFQIKSPQDH----EPVHQNV---FAGSENGDYNAQQ-WRPGGPAFSS---TGSVA--------------------- 136 (1044)
T ss_pred hhhhhcccccccc----chhhhhh---ccCCCCccccccc-cCCCCccccC---CCCcC---------------------
Confidence 9999998643321 2277776 8888876511111 1245566654 12222
Q ss_pred CCCCCCCCCCCCCcCcccCCCCccccchhhHHHHHHHHhhhcccCCCCCCCCCCCCCCCCcccccccCCCceeeeccCCC
Q 045222 190 YSDPVQPRSLDPSKDLAAYGYGSVAWKERVENWKQKQEKLQSLNNDTGGKDWGYNIDAPDFPLMDEARQPLSRKIPIPSS 269 (1049)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~ 269 (1049)
.+.+||+|| ||||++||||||+||+||+|++.+.++.++. ++..+++|+++|+++++||+||++++++
T Consensus 137 ------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~pL~~~~~i~~~ 204 (1044)
T PLN02915 137 ------GKDLEAERE----GYGNAEWKDRVDKWKTRQEKRGLVNKDDSDD--GDDKGDEEEYLLAEARQPLWRKVPIPSS 204 (1044)
T ss_pred ------CCCcCcccc----CcCCHHHHHHHHHHHhhhhhhccccccccCC--CCCCCCcccccccccCCCceEEEecCcc
Confidence 125899998 8999999999999999998777766643221 1223367889999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhccCCCCCC
Q 045222 270 QINPYRMIVIIRLVVLGFFFHYRVMHPVKDAYALWVISVICEVWFALSWILDQFPKWLPIDRETYLDRLSLRYEKPGQPS 349 (1049)
Q Consensus 270 ~~~~yR~~iv~~lv~l~~yl~wRi~~~~~~a~~lWl~~~i~Eiwfa~~wiL~q~~kw~Pv~R~t~~drL~~r~~~~~~~~ 349 (1049)
+|+|||++++++++++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||+++++++
T Consensus 205 ~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~e~~~~~~ 284 (1044)
T PLN02915 205 KINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMRFERDGEPN 284 (1044)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCHHHHHHHhccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhC----------CCCc
Q 045222 350 KLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW----------PRAP 419 (1049)
Q Consensus 350 ~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~W----------pr~P 419 (1049)
+||+|||||+|+||.||||++|+|||||+||+|||++||+|||||||++++|||||.||++|||+| ||+|
T Consensus 285 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaP 364 (1044)
T PLN02915 285 RLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRAP 364 (1044)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------hhcCCCC
Q 045222 420 EWYFAQKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQI---------------------------IFLGPSV 472 (1049)
Q Consensus 420 e~YF~~k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~k---------------------------v~lg~~g 472 (1049)
|+||++|.++++++++++|++|||+|||||||||+|||+|++++++ |+|++++
T Consensus 365 e~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~ 444 (1044)
T PLN02915 365 EFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEG 444 (1044)
T ss_pred HHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccceEEeecCCC
Confidence 9999999999999999999999999999999999999999998653 8899988
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeE
Q 045222 473 GLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVC 552 (1049)
Q Consensus 473 ~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~ 552 (1049)
+.|.+|++||+||||||||||||+||+||||||+++||||++||||||||||||||+|||+++|++|||||||+.|+++|
T Consensus 445 ~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~a 524 (1044)
T PLN02915 445 ALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKLC 524 (1044)
T ss_pred CcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeecCCCCCeeE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCccccCCCCccccchhhhhhHhhhccccccCCCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCc
Q 045222 553 YVQFPRRFDGINQDDRFANRKTVFFDINMKGLDGIQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHC 632 (1049)
Q Consensus 553 ~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~ 632 (1049)
||||||+|+|+|++|||+|||+||||++|+|+||+|||+||||||+|||+||||++||..++.|+.+++||+.|+||
T Consensus 525 fVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~~~~~~--- 601 (1044)
T PLN02915 525 YVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCC--- 601 (1044)
T ss_pred EEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCcccccccccccccccccccc---
Confidence 99999999999999999999999999999999999999999999999999999999998888888899999999974
Q ss_pred ccCcccccccCCCc-h-----------------------hhhhhhhcccCCccccccchhcccccccc-ccchhhhhHHH
Q 045222 633 CSGRRRKKKINRPK-S-----------------------EIKKKFAMKDTAPMCAWEGIEEGIEGAEG-EKSDTLLHQEL 687 (1049)
Q Consensus 633 c~~~r~~~~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 687 (1049)
||+.++++++..++ . +..++...+.++++++++||++|+|++++ |++..++++.+
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1044)
T PLN02915 602 CCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLMSQKNF 681 (1044)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhh
Confidence 66666654332100 0 00000011235678899999999999887 77788999999
Q ss_pred HHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCcEEEEec
Q 045222 688 EKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLTGLIMHCHGWRSIYCI 767 (1049)
Q Consensus 688 ~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrSvY~~ 767 (1049)
+++||+|++|++|++++.+|.+..++++++++||+|||||+||++|+||+||||+|||+|||+.||++||++||||+||+
T Consensus 682 ~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~ 761 (1044)
T PLN02915 682 EKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCM 761 (1044)
T ss_pred hhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHHHHHccCCcEEeeC
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhhhHhHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 045222 768 PDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLERLSYINACLYPFTSIPLLVYCALPAVCLL 847 (1049)
Q Consensus 768 ~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QRL~Yl~s~ly~l~sl~~liylllP~l~Ll 847 (1049)
|.++||.|+||+|+.++++||+|||+|++|||+++|||+|+++.++|+++||++|+++++||++|+++++|+++|++||+
T Consensus 762 p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl~~~~yp~~slp~liY~llP~l~LL 841 (1044)
T PLN02915 762 PKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLL 841 (1044)
T ss_pred CCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998777899999999999999999999999999999999999
Q ss_pred hCCcchhhchHHHHHHHHHHHHHHHHHhhhheeeccccccccccchhHHHhhhhhhHHHHHHHHHHHHHcCCCCCeEecc
Q 045222 848 TGKFITPELTAVAGLYFMSLFMCIFATSILEMRWSGVGIDEWWRNEQFWVIGGISAHPVAVFQGLLKVLAGVDTDFTVTS 927 (1049)
Q Consensus 848 tG~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsGvsi~~wWr~e~~W~I~~~sa~LfAv~~aLlkvl~g~~~~F~VT~ 927 (1049)
+|++++|.++.++.++|+++|+++++++++|++|+|+++++||||||||+|+++|+|+||++++++|+|++++++|+||+
T Consensus 842 tG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLg~se~~F~VTs 921 (1044)
T PLN02915 842 TGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTS 921 (1044)
T ss_pred cCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCcceecC
Confidence 99999998888788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcc--ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCCC
Q 045222 928 KAGDVE--AFSELYAFKWTTLLIPPTTLLIINLVGMVAGVSNAINNGHESWGLLFGKLFFALWVIIHLFPFLKGLIGRHN 1005 (1049)
Q Consensus 928 K~~~~~--~~~~ly~f~wt~l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~~l~g~l~~~~Wvi~~l~Pf~~gL~gR~~ 1005 (1049)
|+.+++ +++++|+|+||++++|++|++++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||++
T Consensus 922 K~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~~~l~~~~wvvv~lyPf~kgLmgR~~ 1001 (1044)
T PLN02915 922 KAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQN 1001 (1044)
T ss_pred CccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 987643 578999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHhheeeecCCCcCCCCCccccccCCC
Q 045222 1006 RISTIVVVWSILLASIFSLLWIRIDPFFAKPDGPLLEECGLDC 1048 (1049)
Q Consensus 1006 ~~P~~v~~~s~~la~~~~llwv~i~~~~~~~~~~~~~~~~~~~ 1048 (1049)
|+||||++||++||++||||||+|+||+++++||++++||++|
T Consensus 1002 r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~~~~~~~~~~~~~ 1044 (1044)
T PLN02915 1002 RTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC 1044 (1044)
T ss_pred CCCeeehHHHHHHHHHHHHHHheeccccCCCCCccccccCCCC
Confidence 9999999999999999999999999999999999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=3.6e-263 Score=2319.73 Aligned_cols=933 Identities=61% Similarity=1.138 Sum_probs=837.2
Q ss_pred ccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccccCCcccCCCCccccchhhhh
Q 045222 33 QLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRLKGSARVEGDEEEDDIDDLEN 112 (1049)
Q Consensus 33 ~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kgsprv~gd~~~~~~~d~e~ 112 (1049)
++++|+||||||+||+++| ||+|||||||+|||||||||||||||+|+||||||||| ||++.||+||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~-g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~ 69 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSN-GEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVET 69 (977)
T ss_pred cCCCccceecccccCcCCC-CCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhh
Confidence 5689999999999999999 99999999999999999999999999999999999998 5777899999
Q ss_pred hccCCCCCccccchhhhcccCCCCCcCCCCCCCCCCCCCCCCCCcccCCCcCCCCCcccccccCCcCCCCcccccCCCCC
Q 045222 113 ELNFDGTDRRQHGAEAMLHDHGGNISYGPASDSYLPKVPLPQVPMLTNGQLVDDTPHEQRALVPSFMGGGKRIHPFPYSD 192 (1049)
Q Consensus 113 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1049)
||+-+ .++++ ++ +++|++.+ .+.+++|++++- .+|
T Consensus 70 ~~~~~----~~~~~-----~~---~~~~~~~~-----~~~~~~~~~~~~--~~~-------------------------- 104 (977)
T PLN02195 70 KHSRN----QSTMA-----SH---LNDTQDVG-----IHARHISSVSTV--DSE-------------------------- 104 (977)
T ss_pred hhccc----hhhhh-----hh---cccCcCCC-----CCCccccccccC--CCc--------------------------
Confidence 99422 13322 33 66665532 112334444430 010
Q ss_pred CCCCCCCCCCcCcccCCCCccccchhhHHHHHHHHhhhcccC-CC-CCCCCCCCCCCCCcccccccCCCceeeeccCCCC
Q 045222 193 PVQPRSLDPSKDLAAYGYGSVAWKERVENWKQKQEKLQSLNN-DT-GGKDWGYNIDAPDFPLMDEARQPLSRKIPIPSSQ 270 (1049)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~ 270 (1049)
+. . +|||++||||||+||.||+|++.... .+ .+.+.+++.+++|+++ ||.++||+||+++++++
T Consensus 105 ------~~-~------~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pL~~~~~i~~~~ 170 (977)
T PLN02195 105 ------LN-D------EYGNPIWKNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEKPS-ADAYEPLSRVIPIPRNK 170 (977)
T ss_pred ------cc-C------ccCCHHHHHHHHHHHHhhhhhccccccccccccCCCCccCCccccc-ccccCCceEEEecCccc
Confidence 11 1 39999999999999999965544222 21 1122223344677775 99999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhccCCCCCCC
Q 045222 271 INPYRMIVIIRLVVLGFFFHYRVMHPVKDAYALWVISVICEVWFALSWILDQFPKWLPIDRETYLDRLSLRYEKPGQPSK 350 (1049)
Q Consensus 271 ~~~yR~~iv~~lv~l~~yl~wRi~~~~~~a~~lWl~~~i~Eiwfa~~wiL~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~ 350 (1049)
|+|||++++++++++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++
T Consensus 171 ~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~ 250 (977)
T PLN02195 171 LTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRLSARYEREGEPSQ 250 (977)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHHHHHhccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhC----------CCCch
Q 045222 351 LMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW----------PRAPE 420 (1049)
Q Consensus 351 lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~W----------pr~Pe 420 (1049)
||+|||||+|+||.||||++|+|||||+||+|||++||+|||||||++++|||||.||++|||+| ||+||
T Consensus 251 LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe 330 (977)
T PLN02195 251 LAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRAPE 330 (977)
T ss_pred CCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------hhcCCCCC
Q 045222 421 WYFAQKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQI---------------------------IFLGPSVG 473 (1049)
Q Consensus 421 ~YF~~k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~k---------------------------v~lg~~g~ 473 (1049)
+||++|.++++++.+|+|++|||+|||||||||+|||++++++++ |+|+++++
T Consensus 331 ~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVll~~~~~ 410 (977)
T PLN02195 331 FYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGETGA 410 (977)
T ss_pred HHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCcchhhhhccCCCC
Confidence 999999999999999999999999999999999999999988543 88999998
Q ss_pred CCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEE
Q 045222 474 LDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCY 553 (1049)
Q Consensus 474 ~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~ 553 (1049)
.|.+|++||+|||||||||||++||+||||||+++||||++||||||||||||||+|||++||++||||+||+.|+++||
T Consensus 411 ~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~va~ 490 (977)
T PLN02195 411 RDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDVCY 490 (977)
T ss_pred cccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcccCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCccccCCCCccccchhhhhhHhhhccccccCCCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcc
Q 045222 554 VQFPRRFDGINQDDRFANRKTVFFDINMKGLDGIQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCC 633 (1049)
Q Consensus 554 VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c 633 (1049)
|||||+|+|++++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++||+.++.++.++.+| | ||
T Consensus 491 VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~---~----~~ 563 (977)
T PLN02195 491 VQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSSSS---S----CC 563 (977)
T ss_pred EcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccccccc---c----cc
Confidence 9999999999999999999999999999999999999999999999999999999987655544433332 2 24
Q ss_pred cCcccccccCCCchhhhhhhhcccCCccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcc
Q 045222 634 SGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSAS 713 (1049)
Q Consensus 634 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~ 713 (1049)
|+.+++..+ .++.+.+..+....+.++.+++++++ ..+++++..+++++++++||+|.+|++|++++.+|.+....
T Consensus 564 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~ 639 (977)
T PLN02195 564 CPTKKKPEQ-DPSEIYRDAKREDLNAAIFNLREIDN---YDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPESAN 639 (977)
T ss_pred ccccccccc-cchhhccccccccccccccccccccc---cchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCCCCCC
Confidence 443333211 11110000000011223333433322 12336677889999999999999999999999999998888
Q ss_pred hhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecc
Q 045222 714 LASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWAL 793 (1049)
Q Consensus 714 ~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~ 793 (1049)
++++++||++|+||+||++|+||+||||+|||+|||+.||++||++||||+||+|.++||.|+||+|+.++++||+|||+
T Consensus 640 ~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~ 719 (977)
T PLN02195 640 PSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWAL 719 (977)
T ss_pred cHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhccCccccccC-CCCChhhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhhchHHHHHHHHHHHHHHH
Q 045222 794 GSVEVFLSRHCPVWYGYG-GGLKWLERLSYINACLYPFTSIPLLVYCALPAVCLLTGKFITPELTAVAGLYFMSLFMCIF 872 (1049)
Q Consensus 794 G~lQI~lsr~~Pl~~g~~-~~Ltl~QRL~Yl~s~ly~l~sl~~liylllP~l~LltG~~iip~~s~~~~~~fi~lfls~~ 872 (1049)
|++||+++|+||+|+|+. ++|+++||++|+++++||++|+++++|+++|++||++|++++|.++++++++|+++|++++
T Consensus 720 G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~ 799 (977)
T PLN02195 720 GSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISII 799 (977)
T ss_pred chhhhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHHHHHHHHHH
Confidence 999999999999998764 7899999999999999999999999999999999999999999999989899999999999
Q ss_pred HHhhhheeeccccccccccchhHHHhhhhhhHHHHHHHHHHHHHcCCCCCeEeccCCCCccccccccccccccchHHHHH
Q 045222 873 ATSILEMRWSGVGIDEWWRNEQFWVIGGISAHPVAVFQGLLKVLAGVDTDFTVTSKAGDVEAFSELYAFKWTTLLIPPTT 952 (1049)
Q Consensus 873 ~~~lLe~rwsGvsi~~wWr~e~~W~I~~~sa~LfAv~~aLlkvl~g~~~~F~VT~K~~~~~~~~~ly~f~wt~l~iP~~t 952 (1049)
+++++|++|+|+++++||||||||+|+++|+||||++++++|+|+|++++|+||+|..++++++++|+|+||++|||++|
T Consensus 800 ~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~dd~~~~~~Y~f~~S~l~iP~tt 879 (977)
T PLN02195 800 LTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAADDTEFGELYMVKWTTLLIPPTS 879 (977)
T ss_pred HHHHHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceeccccccccchhcceeccceehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCCCccchhHHHHHHHHHHHHHhheeeecCC
Q 045222 953 LLIINLVGMVAGVSNAINNGHESWGLLFGKLFFALWVIIHLFPFLKGLIGRHNRISTIVVVWSILLASIFSLLWIRIDPF 1032 (1049)
Q Consensus 953 llilnlv~iv~gi~~~~~~~~~~w~~l~g~l~~~~Wvi~~l~Pf~~gL~gR~~~~P~~v~~~s~~la~~~~llwv~i~~~ 1032 (1049)
++++|++|+++|+++++++++++|+++++++||++|+++|+|||+||||||++|+||||++||++|+++||||||+||||
T Consensus 880 l~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~ 959 (977)
T PLN02195 880 LLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPF 959 (977)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCc-cccc-cCCC
Q 045222 1033 FAKPDGPL-LEEC-GLDC 1048 (1049)
Q Consensus 1033 ~~~~~~~~-~~~~-~~~~ 1048 (1049)
+++++||+ +++| |++|
T Consensus 960 ~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 960 VGKTDTTTLSNNCISIDC 977 (977)
T ss_pred ccCCCCCchhhccCCCCC
Confidence 99999999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=5.4e-230 Score=2044.26 Aligned_cols=917 Identities=48% Similarity=0.879 Sum_probs=791.9
Q ss_pred CCccccccccC---CceEEEeeccCccCCCccCccCCcccCC--cCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhh
Q 045222 3 VSAGLVAGSHN---RNELIIIRRDRESAARPLQQLGGQKCHI--CGDDVGLPVDGGDPFVACNECAFPICRTCYEYERRE 77 (1049)
Q Consensus 3 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Cqi--Cgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerke 77 (1049)
.+++||||+|| |.|+|++..|++..|+++.+.++..|.+ |+.+++.+++ |+...+| ||+|.|||+||-++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (1135)
T PLN02248 88 VSNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDER-GEDLLPC-ECGFKICRDCYIDAVKS 165 (1135)
T ss_pred cccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccc-cccCCcc-cccchhHHhHhhhhhhc
Confidence 37899999999 9999999999999999999999999998 9999999999 9999999 99999999999999999
Q ss_pred cCCCCCCCccccccccCCcccCCCCccccchhhhhhccCCCCCccccchhhhcccCCCCCcCCCCCCCCCCCCCCCCCCc
Q 045222 78 GNQVCPQCKTRFRRLKGSARVEGDEEEDDIDDLENELNFDGTDRRQHGAEAMLHDHGGNISYGPASDSYLPKVPLPQVPM 157 (1049)
Q Consensus 78 g~q~CPqCkt~Ykr~kgsprv~gd~~~~~~~d~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1049)
| +.||+||++||.+ |+++++ +|.++ +. .. ++.. ..++...+.. .+. ....
T Consensus 166 ~-~~~~~~~~~~~~~--------~~~~~~-~~~~~------~~--~~----~~~~-----~~~~~~~~~~-~~~--~~~~ 215 (1135)
T PLN02248 166 G-GICPGCKEPYKVT--------DLDDEV-PDESS------GA--LP----LPPP-----GGSKMDRRLS-LMK--SNSL 215 (1135)
T ss_pred C-CCCCCCccccccc--------cccccc-ccccc------cc--cc----CCCC-----CCcccccccc-ccc--ccch
Confidence 6 7999999999765 332222 21111 01 11 1100 0000000000 000 0011
Q ss_pred ccCCCcCCCCCcccccccCCcCCCCcccccCCCCCCCCCCCCCCCcCcccCCCCccccchhhHHHHHHHHhhhcccCCCC
Q 045222 158 LTNGQLVDDTPHEQRALVPSFMGGGKRIHPFPYSDPVQPRSLDPSKDLAAYGYGSVAWKERVENWKQKQEKLQSLNNDTG 237 (1049)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~ 237 (1049)
+..+| +|||+ | +||++++| ++|||||+.|+++.. .|+
T Consensus 216 ~~~~~-~~~~~--~------------------------~~w~~~~~--~~~~~~~~~~~~~~~--------------~~~ 252 (1135)
T PLN02248 216 LMRSQ-TGDFD--H------------------------NRWLFETK--GTYGYGNAVWPKDDG--------------YGD 252 (1135)
T ss_pred hccCC-CCCCC--C------------------------ceeeeecc--cccccccccCccccc--------------cCC
Confidence 23345 56676 4 68999998 999999999998732 222
Q ss_pred CCCCCCCCCCCCcccccccCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHH
Q 045222 238 GKDWGYNIDAPDFPLMDEARQPLSRKIPIPSSQINPYRMIVIIRLVVLGFFFHYRVMHPVKDAYALWVISVICEVWFALS 317 (1049)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~iv~~lv~l~~yl~wRi~~~~~~a~~lWl~~~i~Eiwfa~~ 317 (1049)
+.+ + .+ ...+||++++||+||+++++++|+|||++++++++++++||+||++|++.+++|+|+++++||+||+|+
T Consensus 253 ~~~---~-~~-~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~ 327 (1135)
T PLN02248 253 DGG---G-GG-PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFS 327 (1135)
T ss_pred CCC---c-cc-cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHH
Confidence 111 1 11 114799999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHhhcCccccccccchhhhhhhhccCCCC-----CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEE
Q 045222 318 WILDQFPKWLPIDRETYLDRLSLRYEKPGQ-----PSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYV 392 (1049)
Q Consensus 318 wiL~q~~kw~Pv~R~t~~drL~~r~~~~~~-----~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV 392 (1049)
|+|+|++||+||+|.||+|||++||++|++ +++||+|||||+|+||.||||++|+|||||+||+|||++||+|||
T Consensus 328 Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYv 407 (1135)
T PLN02248 328 WLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYL 407 (1135)
T ss_pred HHHhccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEE
Confidence 999999999999999999999999986543 578999999999999999999999999999999999999999999
Q ss_pred EcCCCChhhHHHhhhhHHHhhhC----------CCCchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045222 393 SDDGAAMLTFEALSETSEFARKW----------PRAPEWYFAQKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAK 462 (1049)
Q Consensus 393 ~DDG~s~~Tf~al~Ea~~fA~~W----------pr~Pe~YF~~k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~ 462 (1049)
||||++++|||||.||++|||+| ||+||+||++|.++++++.+|+|++|||.|||||||||+|||+|++.
T Consensus 408 SDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~ 487 (1135)
T PLN02248 408 SDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDS 487 (1135)
T ss_pred ecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999641
Q ss_pred ---------------HH-------------------------------------------------hhhcCCCC------
Q 045222 463 ---------------AQ-------------------------------------------------IIFLGPSV------ 472 (1049)
Q Consensus 463 ---------------a~-------------------------------------------------kv~lg~~g------ 472 (1049)
++ +|+|++++
T Consensus 488 ~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~wm~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g 567 (1135)
T PLN02248 488 IRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATWMADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMG 567 (1135)
T ss_pred ccccccccchhHHHHhhhhhhhhcccccccccccccceeeccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccC
Confidence 10 05665432
Q ss_pred ------CCCCC--CCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 045222 473 ------GLDTD--GNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMD 544 (1049)
Q Consensus 473 ------~~d~~--~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~D 544 (1049)
..|.+ +++||+||||||||||||+||+||||||+++||||++||||||||||||||+|||++||++||||+|
T Consensus 568 ~~~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 568 SADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred cccccccccccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 12333 3489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEecCccccCCCCccccchhhhhhHhhhccccccCCCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCC
Q 045222 545 PLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDINMKGLDGIQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLP 624 (1049)
Q Consensus 545 p~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~ 624 (1049)
|+ |+++|||||||+|+|+|++|||+||+++|||++|+|+||+|||+||||||+|||+||||++||+..+.++
T Consensus 648 ~~-g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~------- 719 (1135)
T PLN02248 648 RG-GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSG------- 719 (1135)
T ss_pred CC-CCceEEEcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCcccccccc-------
Confidence 97 9999999999999999999999999999999999999999999999999999999999999987644322
Q ss_pred CCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhh-
Q 045222 625 KWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLL- 703 (1049)
Q Consensus 625 ~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~- 703 (1049)
+|+ +||+.++++++.. .+.+. .+++++ .++ .++.+.++++||+|..|++|+..
T Consensus 720 -~~~---~~~~~~~~~~~~~------------~~~~~-~~~~~~-----~~~----~~~~~~~~~rfG~S~~fi~S~~~a 773 (1135)
T PLN02248 720 -CFG---SCKFTKKKKKETS------------ASEPE-EQPDLE-----DDD----DLELSLLPKRFGNSTMFAASIPVA 773 (1135)
T ss_pred -ccc---ccccccccccccc------------ccccc-cccccc-----ccc----hhhhhhhhhhhccchhhhhhhHHH
Confidence 222 3554444322111 00000 011111 111 13567789999999999999953
Q ss_pred hcCCCCC-------------------CcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCcEEE
Q 045222 704 EDGGTPK-------------------SASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLTGLIMHCHGWRSI 764 (1049)
Q Consensus 704 e~GG~~~-------------------~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrSv 764 (1049)
+.+|.+. ...++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+
T Consensus 774 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSv 853 (1135)
T PLN02248 774 EFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSV 853 (1135)
T ss_pred hhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceE
Confidence 3232221 123568999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhhhHhHHhhhhhhhhHHHHHHHHHHHHH
Q 045222 765 YCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLERLSYINACLYPFTSIPLLVYCALPAV 844 (1049)
Q Consensus 765 Y~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QRL~Yl~s~ly~l~sl~~liylllP~l 844 (1049)
||+|++.||.|+||+|+.++++||+|||+|++|||++|++|+++ .++|+++||++|+++++|||+++++++|+++|++
T Consensus 854 Y~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l 931 (1135)
T PLN02248 854 YCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPAL 931 (1135)
T ss_pred eCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999985 4799999999999999999999999999999999
Q ss_pred HHHhCCcchhhchHHHHHHHHHHHHHHHHHhhhheeeccccccccccchhHHHhhhhhhHHHHHHHHHHHHHcCCCCCeE
Q 045222 845 CLLTGKFITPELTAVAGLYFMSLFMCIFATSILEMRWSGVGIDEWWRNEQFWVIGGISAHPVAVFQGLLKVLAGVDTDFT 924 (1049)
Q Consensus 845 ~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsGvsi~~wWr~e~~W~I~~~sa~LfAv~~aLlkvl~g~~~~F~ 924 (1049)
||++|++++|+.+..++++++.+++++++++++|++|+|+++++||||||||+|+++++|++|++++++|+|+|++++|+
T Consensus 932 ~LLtGi~~~p~~~~~fl~yll~l~l~~~~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~ 1011 (1135)
T PLN02248 932 SLFSGQFIVQTLNVTFLVYLLIITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFT 1011 (1135)
T ss_pred HHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccce
Confidence 99999999998766555556566788899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcc---ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHhhhc
Q 045222 925 VTSKAGDVE---AFSELYAFKWTTLLIPPTTLLIINLVGMVAGVSNAINNGHESWGLLFGKLFFALWVIIHLFPFLKGLI 1001 (1049)
Q Consensus 925 VT~K~~~~~---~~~~ly~f~wt~l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~~l~g~l~~~~Wvi~~l~Pf~~gL~ 1001 (1049)
||+|+.+++ .++++|+|+||++++|+++++++|++|+++|++|+++++++.|+.+++++||++|+++|+|||+||||
T Consensus 1012 VTsK~~~~d~~~~~a~ly~f~wS~L~iP~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~ 1091 (1135)
T PLN02248 1012 LTSKSAGDDEDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLM 1091 (1135)
T ss_pred eCCcccccccccccchheecCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999987543 57899999999999999999999999999999999988888999999999999999999999999999
Q ss_pred cCCCccchhHHHHHHHHHHHHHhheeeecCCCcC
Q 045222 1002 GRHNRISTIVVVWSILLASIFSLLWIRIDPFFAK 1035 (1049)
Q Consensus 1002 gR~~~~P~~v~~~s~~la~~~~llwv~i~~~~~~ 1035 (1049)
||++|+||||+|||++|++++|||||+|+||...
T Consensus 1092 gR~gr~P~iv~v~s~ll~~~~sll~v~~~~~~~~ 1125 (1135)
T PLN02248 1092 GRRGRTPTIVYVWSGLLSITISLLWVAISPPSGA 1125 (1135)
T ss_pred ccCCCCCeehHHHHHHHHHHHHHHheEeccccCc
Confidence 9999999999999999999999999999999854
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=5.2e-199 Score=1734.82 Aligned_cols=681 Identities=66% Similarity=1.175 Sum_probs=644.6
Q ss_pred eEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhC----------CCCchhhh
Q 045222 354 VDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW----------PRAPEWYF 423 (1049)
Q Consensus 354 VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~W----------pr~Pe~YF 423 (1049)
|||||+|+||.||||++|+|||||+||+|||.+||+|||||||++++|||||.||++|||+| ||+||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------hhcCCCCCCCC
Q 045222 424 AQKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQI---------------------------IFLGPSVGLDT 476 (1049)
Q Consensus 424 ~~k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~k---------------------------v~lg~~g~~d~ 476 (1049)
++|.|+++++.+++|++|||+|||+|||||+|||++++++++ |+++++++.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 999999999999999999999999999999999999987764 88999999999
Q ss_pred CCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEec
Q 045222 477 DGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQF 556 (1049)
Q Consensus 477 ~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~ 556 (1049)
+|++||+||||||||||+++||+||||||+++||||++||||||||||||||+|||+++|++||||+||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCccccchhhhhhHhhhccccccCCCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCc
Q 045222 557 PRRFDGINQDDRFANRKTVFFDINMKGLDGIQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGR 636 (1049)
Q Consensus 557 PQ~F~nid~~D~yan~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~ 636 (1049)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++||...+.++.++ +++ +||.+
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~-----~~~---~~c~~ 312 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTC-----CCC---SCCFG 312 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcce-----eee---ecccC
Confidence 9999999999999999999999999999999999999999999999999999998877655532 122 24444
Q ss_pred ccccccCCCchhhhhhhhcccCCccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhh
Q 045222 637 RRKKKINRPKSEIKKKFAMKDTAPMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLAS 716 (1049)
Q Consensus 637 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~ 716 (1049)
++|+++.+++...+..+..+.+.++++++|++|++++.+++++..+++++|+++||+|++|++|+.++.|+.+.+.++++
T Consensus 313 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~ 392 (720)
T PF03552_consen 313 RRKKKKSKKKPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPAS 392 (720)
T ss_pred CcccccccccchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHH
Confidence 55444332222111111223477899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccch
Q 045222 717 LLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSV 796 (1049)
Q Consensus 717 ~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~l 796 (1049)
+|+||+||+||+||++|+|||||||+|||+|||+.||++||++||||+||+|+++||.|.||+||.+.|.|++|||.|++
T Consensus 393 ~L~EA~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~Gsl 472 (720)
T PF03552_consen 393 LLEEAIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSL 472 (720)
T ss_pred HHHHHHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCccccccCCCCChhhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhhchHHHHHHHHHHHHHHHHHhh
Q 045222 797 EVFLSRHCPVWYGYGGGLKWLERLSYINACLYPFTSIPLLVYCALPAVCLLTGKFITPELTAVAGLYFMSLFMCIFATSI 876 (1049)
Q Consensus 797 QI~lsr~~Pl~~g~~~~Ltl~QRL~Yl~s~ly~l~sl~~liylllP~l~LltG~~iip~~s~~~~~~fi~lfls~~~~~l 876 (1049)
||++|||||+|||+.++|+++||++|++.++|+++|+|.++|+++|++||++|++++|++++.++++|+++|++++++++
T Consensus 473 EI~fSr~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~l 552 (720)
T PF03552_consen 473 EIFFSRHCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSL 552 (720)
T ss_pred eeehhcCCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHH
Confidence 99999999999988799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeeccccccccccchhHHHhhhhhhHHHHHHHHHHHHHcCCCCCeEeccCCCC--ccccccccccccccchHHHHHHH
Q 045222 877 LEMRWSGVGIDEWWRNEQFWVIGGISAHPVAVFQGLLKVLAGVDTDFTVTSKAGD--VEAFSELYAFKWTTLLIPPTTLL 954 (1049)
Q Consensus 877 Le~rwsGvsi~~wWr~e~~W~I~~~sa~LfAv~~aLlkvl~g~~~~F~VT~K~~~--~~~~~~ly~f~wt~l~iP~~tll 954 (1049)
+|++|+|+++++||||||||+|+++++|+||++++++|+|+|++++|+||+|+.+ +++++++|+|+||++++|++||+
T Consensus 553 lE~~wsG~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTll 632 (720)
T PF03552_consen 553 LEFRWSGVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLL 632 (720)
T ss_pred HHHHhccCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876 45678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCCCccchhHHHHHHHHHHHHHhheeeecCCCc
Q 045222 955 IINLVGMVAGVSNAINNGHESWGLLFGKLFFALWVIIHLFPFLKGLIGRHNRISTIVVVWSILLASIFSLLWIRIDPFFA 1034 (1049)
Q Consensus 955 ilnlv~iv~gi~~~~~~~~~~w~~l~g~l~~~~Wvi~~l~Pf~~gL~gR~~~~P~~v~~~s~~la~~~~llwv~i~~~~~ 1034 (1049)
++|++|+++|+++++++++++|+++++++||++||++|+|||+||||||++|+||||++||++||++|+||||+||||++
T Consensus 633 ilNLva~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~ 712 (720)
T PF03552_consen 633 ILNLVAFVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLA 712 (720)
T ss_pred HHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccc
Q 045222 1035 KPDGPLLE 1042 (1049)
Q Consensus 1035 ~~~~~~~~ 1042 (1049)
+++||+++
T Consensus 713 ~~~~~~~~ 720 (720)
T PF03552_consen 713 KTTGPDLK 720 (720)
T ss_pred CCCCCCCC
Confidence 99999875
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=9.2e-185 Score=1617.35 Aligned_cols=694 Identities=33% Similarity=0.590 Sum_probs=626.2
Q ss_pred cCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhcCccccccccchh
Q 045222 256 ARQPLSRKIPIPSSQINPYRMIVIIRLVVLGFFFHYRVMHPVKDAYALWVISVICEVWFALSWILDQFPKWLPIDRETYL 335 (1049)
Q Consensus 256 ~~~pl~~k~~~~~~~~~~yR~~iv~~lv~l~~yl~wRi~~~~~~a~~lWl~~~i~Eiwfa~~wiL~q~~kw~Pv~R~t~~ 335 (1049)
+..||+++++++++. ||++.++.+++++.||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.++|
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999995 899999999999999999999999887 6899999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhC
Q 045222 336 DRLSLRYEKPGQPSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 415 (1049)
Q Consensus 336 drL~~r~~~~~~~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~W 415 (1049)
|+|++|++ +||+|||||+||||.||||++|+|||+|+||+|||+|||+|||||||++++|||||.||++|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------CCCchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Q 045222 416 ----------PRAPEWYFAQKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQ--------------------- 464 (1049)
Q Consensus 416 ----------pr~Pe~YF~~k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~--------------------- 464 (1049)
||+||+||+++.+ ++..++|++|||.||+||||||+|||+++...+
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~~~~~~~~~~~~~~~~~~~~~~dH~~ 233 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDATGDSHWLDAEDDFEAFSNTKPNDHST 233 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhccCCCCcccCCcccccCCCCCCCCcc
Confidence 9999999998543 334579999999999999999999998743100
Q ss_pred --hhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh
Q 045222 465 --IIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM 542 (1049)
Q Consensus 465 --kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff 542 (1049)
+|+++++|+ +.+|++||+||||||||||+++||+||||||+++||||++||||||||||||||+|||+++|++||||
T Consensus 234 iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ 312 (756)
T PLN02190 234 IVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIF 312 (756)
T ss_pred ceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhh
Confidence 178888664 44689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-ceeEEEecCccccCCCCccccchhhhhhHhhhccccccCCCcccccccchhhhhhhcCCCCCCCCCCCCCcCC
Q 045222 543 MDPLLG-KRVCYVQFPRRFDGINQDDRFANRKTVFFDINMKGLDGIQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSK 621 (1049)
Q Consensus 543 ~Dp~~g-~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~ 621 (1049)
+||+.+ +++|||||||+|+ |+|+||+++|||++|+|+||+|||+||||||+|||+||||++||+..+....
T Consensus 313 ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~~~~--- 384 (756)
T PLN02190 313 LQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDDGSL--- 384 (756)
T ss_pred cCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCcccccccccc---
Confidence 998744 6899999999998 7899999999999999999999999999999999999999998754221000
Q ss_pred CCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhh
Q 045222 622 CLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVAST 701 (1049)
Q Consensus 622 ~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~ 701 (1049)
. +.+ ++ ...++.+++++||+|+.|++|+
T Consensus 385 ------------~-----------------------~~~----------------~~-~~~~~~~~~~~fg~s~~f~~s~ 412 (756)
T PLN02190 385 ------------S-----------------------SVA----------------TR-EFLAEDSLAREFGNSKEMVKSV 412 (756)
T ss_pred ------------c-----------------------ccc----------------cc-cccchhhhhhhcCCcHHHHHHH
Confidence 0 000 00 1234566789999999999999
Q ss_pred hhhcCCCCC-CcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCcEEEEecCCCCccccCCCcC
Q 045222 702 LLEDGGTPK-SASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPIN 780 (1049)
Q Consensus 702 l~e~GG~~~-~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~t 780 (1049)
.++..+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|+++||.|++|++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~ 492 (756)
T PLN02190 413 VDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPG 492 (756)
T ss_pred HHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCCCC
Confidence 865544332 3345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhheecccchhhhhhccCccccccCCCCChhhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhhchHHH
Q 045222 781 LSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLERLSYINACLYPFTSIPLLVYCALPAVCLLTGKFITPELTAVA 860 (1049)
Q Consensus 781 l~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QRL~Yl~s~ly~l~sl~~liylllP~l~LltG~~iip~~s~~~ 860 (1049)
+.++++||+|||+|++||+++|+||+++++.++|+++||++|++.++ |++++|+++|+++|++||++|++++|.. ++
T Consensus 493 l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~--~~ 569 (756)
T PLN02190 493 GPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG--VY 569 (756)
T ss_pred hHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc--cH
Confidence 99999999999999999999999999987678999999999999988 9999999999999999999999999975 45
Q ss_pred HHHHHHHHHHHHHHhhhheeeccccccccccchhHHHhhhhhhHHHHHHHHHHHHHcCCCCCeEeccCCCC---------
Q 045222 861 GLYFMSLFMCIFATSILEMRWSGVGIDEWWRNEQFWVIGGISAHPVAVFQGLLKVLAGVDTDFTVTSKAGD--------- 931 (1049)
Q Consensus 861 ~~~fi~lfls~~~~~lLe~rwsGvsi~~wWr~e~~W~I~~~sa~LfAv~~aLlkvl~g~~~~F~VT~K~~~--------- 931 (1049)
+++++++++++.+++++|++|+|+++++||||||||+|+++|+|++|++++++|+|++++++|+||+|..+
T Consensus 570 ~~~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~~~ 649 (756)
T PLN02190 570 LGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSGSG 649 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccccccc
Confidence 67788888999999999999999999999999999999999999999999999999999999999999643
Q ss_pred ----c--cc--cccccccccccchHHHHHHHHHHHHHHHHHHHHHHh---cCCCcchhhHHHHHHHHHHHHHHHHHHhhh
Q 045222 932 ----V--EA--FSELYAFKWTTLLIPPTTLLIINLVGMVAGVSNAIN---NGHESWGLLFGKLFFALWVIIHLFPFLKGL 1000 (1049)
Q Consensus 932 ----~--~~--~~~ly~f~wt~l~iP~~tllilnlv~iv~gi~~~~~---~~~~~w~~l~g~l~~~~Wvi~~l~Pf~~gL 1000 (1049)
+ ++ .+++|+|+||++++|++|++++|++|+++|+.+.+. +..+.|+. ++++|+++|+++|+|||+|||
T Consensus 650 ~~~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~~-l~q~~~~~~vv~~~~P~~~gl 728 (756)
T PLN02190 650 PSQGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGSG-LAEACGCILVVMLFLPFLKGL 728 (756)
T ss_pred cccccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccc-HHHHHHHHHHHHHHHHHHHHH
Confidence 1 12 268899999999999999999999999988876643 34456665 499999999999999999999
Q ss_pred ccCC-CccchhHHHHHHHHHHHHHhhee
Q 045222 1001 IGRH-NRISTIVVVWSILLASIFSLLWI 1027 (1049)
Q Consensus 1001 ~gR~-~~~P~~v~~~s~~la~~~~llwv 1027 (1049)
|+|. +++|++|++.|++|+++|..+.|
T Consensus 729 ~~kdkg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 729 FEKGKYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred hcCCCCCCChhHHHHHHHHHHHHHhccC
Confidence 9665 59999999999999999998764
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=3.1e-175 Score=1544.03 Aligned_cols=671 Identities=34% Similarity=0.643 Sum_probs=618.1
Q ss_pred ccCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccccch-hHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Q 045222 255 EARQPLSRKIPIPSSQINPYRMIVIIRLVVLGFFFHYRVMHPVKDA-YALWVISVICEVWFALSWILDQFPKWLPIDRET 333 (1049)
Q Consensus 255 ~~~~pl~~k~~~~~~~~~~yR~~iv~~lv~l~~yl~wRi~~~~~~a-~~lWl~~~i~Eiwfa~~wiL~q~~kw~Pv~R~t 333 (1049)
....||+++++++++. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+|++|.|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 4556999999998886 5999999999999999999999877655 789999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhh
Q 045222 334 YLDRLSLRYEKPGQPSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAR 413 (1049)
Q Consensus 334 ~~drL~~r~~~~~~~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~ 413 (1049)
++|||+++++ +++||+|||||||+||.||||++|+|||||+||+|||.|||+|||||||++++|||||.||++|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997664 368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hC----------CCCchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Q 045222 414 KW----------PRAPEWYFAQKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQ------------------- 464 (1049)
Q Consensus 414 ~W----------pr~Pe~YF~~k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~------------------- 464 (1049)
+| ||+||+||+++. ++|++|||.||+||||||+|||+++++.+
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~~~~~~~~~~~~~~~~~f~~w~ 234 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVERGKVSTDYITCDQEREAFSRWT 234 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhcCcCchhhhhhcccccccccCc
Confidence 99 999999999872 46789999999999999999999974211
Q ss_pred ------------hhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChH
Q 045222 465 ------------IIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNS 532 (1049)
Q Consensus 465 ------------kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p 532 (1049)
+|+++++++.|.+|+++|+|+|||||||||++||+||||||+++||||++||||||+|||||||+|||
T Consensus 235 ~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p 314 (734)
T PLN02893 235 DKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDP 314 (734)
T ss_pred CCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCch
Confidence 17888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhhhhHhhhccccccCCCcccccccchhhhhhhcCCCCCCC
Q 045222 533 KALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDINMKGLDGIQGPINVGTGCVFRRQAFYGYDAPKT 612 (1049)
Q Consensus 533 ~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~ 612 (1049)
++|+++||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+...
T Consensus 315 ~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~~~ 394 (734)
T PLN02893 315 QTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSSLI 394 (734)
T ss_pred hHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999743100
Q ss_pred CCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccchhccccccccccchhhhhHHHHHhhC
Q 045222 613 KKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFG 692 (1049)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG 692 (1049)
. ++++ .++
T Consensus 395 ~---------------------------------------------------~~~~---------------------~~~ 402 (734)
T PLN02893 395 L---------------------------------------------------PEIP---------------------ELN 402 (734)
T ss_pred c---------------------------------------------------hhhh---------------------hcc
Confidence 0 0000 000
Q ss_pred CcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCcEEEEecCCCCc
Q 045222 693 QSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLTGLIMHCHGWRSIYCIPDRPA 772 (1049)
Q Consensus 693 ~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrSvY~~~~~~A 772 (1049)
+ .++...++...++++||++|+||.||++|+||+||||.|+|+|||+.||++||++||||+||+|++.|
T Consensus 403 ~-----------~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~a 471 (734)
T PLN02893 403 P-----------DHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPA 471 (734)
T ss_pred c-----------ccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchh
Confidence 0 01112344567899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhCCcc
Q 045222 773 FKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLERLSYINACLYPFTSIPLLVYCALPAVCLLTGKFI 852 (1049)
Q Consensus 773 f~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QRL~Yl~s~ly~l~sl~~liylllP~l~LltG~~i 852 (1049)
|.|++|+|+.++++||+|||+|++||+++|+||+++|. ++|+++||++|++.++||++|+++++|+++|++||++|+++
T Consensus 472 f~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i 550 (734)
T PLN02893 472 FLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSI 550 (734)
T ss_pred hccCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999764 78999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhhhheeeccccccccccchhHHHhhhhhhHHHHHHHHHHHHHcCCCCCeEeccCCCCc
Q 045222 853 TPELTAVAGLYFMSLFMCIFATSILEMRWSGVGIDEWWRNEQFWVIGGISAHPVAVFQGLLKVLAGVDTDFTVTSKAGDV 932 (1049)
Q Consensus 853 ip~~s~~~~~~fi~lfls~~~~~lLe~rwsGvsi~~wWr~e~~W~I~~~sa~LfAv~~aLlkvl~g~~~~F~VT~K~~~~ 932 (1049)
+|.++.+++++++.+++++++++++|++|+|.++++|||+||+|+|.++++|++|++++++|+|++++++|+||+|+.++
T Consensus 551 ~p~~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~ 630 (734)
T PLN02893 551 FPKASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDE 630 (734)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCccc
Confidence 99999989888999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred cc---c-cccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCCC--
Q 045222 933 EA---F-SELYAFKW-TTLLIPPTTLLIINLVGMVAGVSNAINNGHESWGLLFGKLFFALWVIIHLFPFLKGLIGRHN-- 1005 (1049)
Q Consensus 933 ~~---~-~~ly~f~w-t~l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~~l~g~l~~~~Wvi~~l~Pf~~gL~gR~~-- 1005 (1049)
++ + .++|+|+| +++++|+++++++|++|+++|+++++.+ ..|+.+++++|+++|+++|+|||++|||+|++
T Consensus 631 ~~~~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~--~~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg 708 (734)
T PLN02893 631 EQSKRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQ--RNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDG 708 (734)
T ss_pred ccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 32 2 48999995 8899999999999999999999999875 46888999999999999999999999999986
Q ss_pred ccchhHHHHHHHHHHHHHhh
Q 045222 1006 RISTIVVVWSILLASIFSLL 1025 (1049)
Q Consensus 1006 ~~P~~v~~~s~~la~~~~ll 1025 (1049)
|+|++|++||++|+.++.++
T Consensus 709 ~~P~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 709 KLPVKITLISIVLAWALYLA 728 (734)
T ss_pred CCCccHHHHHHHHHHHHHHH
Confidence 99999999999999887764
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=7.9e-67 Score=634.43 Aligned_cols=490 Identities=25% Similarity=0.381 Sum_probs=383.3
Q ss_pred HHH-HHHHHHHHHHHHhhhhcccccch----hHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhccCCCCCC
Q 045222 275 RMI-VIIRLVVLGFFFHYRVMHPVKDA----YALWVISVICEVWFALSWILDQFPKWLPIDRETYLDRLSLRYEKPGQPS 349 (1049)
Q Consensus 275 R~~-iv~~lv~l~~yl~wRi~~~~~~a----~~lWl~~~i~Eiwfa~~wiL~q~~kw~Pv~R~t~~drL~~r~~~~~~~~ 349 (1049)
|++ +++.+++.+.|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|...+ .+..++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVP--------LPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC--------CCCCcc
Confidence 665 44566667899999999887643 23567789999998888888878777888775421 122356
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhh
Q 045222 350 KLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDY 429 (1049)
Q Consensus 350 ~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~ 429 (1049)
.+|+|||+||||| |++.++++|+.+++++|||++|++|||+|||++|.|.....+.++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~------------------- 186 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQA------------------- 186 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhh-------------------
Confidence 7999999999999 999999999999999999999999999999999865322211110
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHH
Q 045222 430 LKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVR 509 (1049)
Q Consensus 430 lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lr 509 (1049)
+..+.|..+++ + +++ + .+.|+.|++ ++|+||||||++++
T Consensus 187 -------~~~~~~~~~~~----l----------~~~--~--------------~v~yi~r~~----n~~~KAgnLN~al~ 225 (713)
T TIGR03030 187 -------EAAQRREELKE----F----------CRK--L--------------GVNYITRPR----NVHAKAGNINNALK 225 (713)
T ss_pred -------hhhhhHHHHHH----H----------HHH--c--------------CcEEEECCC----CCCCChHHHHHHHH
Confidence 00001111111 1 111 1 279999987 67899999999999
Q ss_pred hccCCCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEEecCccccCCCCc-------cccchhhhhhHhhhc
Q 045222 510 VSAVLTNSPYLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYVQFPRRFDGINQD-------DRFANRKTVFFDINM 581 (1049)
Q Consensus 510 vSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~VQ~PQ~F~nid~~-------D~yan~~~vFfdi~~ 581 (1049)
.++||||+++|||++ ++|++|++++++| .|| ++++||+||.|+|.|+. +++.+++..||..++
T Consensus 226 ----~a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~ 296 (713)
T TIGR03030 226 ----HTDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQ 296 (713)
T ss_pred ----hcCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHH
Confidence 579999999999999 6899999999988 588 89999999999998753 345678889999999
Q ss_pred cccccCCCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCcc
Q 045222 582 KGLDGIQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPM 661 (1049)
Q Consensus 582 ~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1049)
+|+|.++++++|||++++||+||.
T Consensus 297 ~g~~~~~~~~~~Gs~~~iRR~al~-------------------------------------------------------- 320 (713)
T TIGR03030 297 DGNDFWNAAFFCGSAAVLRREALD-------------------------------------------------------- 320 (713)
T ss_pred HHHhhhCCeeecCceeEEEHHHHH--------------------------------------------------------
Confidence 999999999999999999998872
Q ss_pred ccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccccccc
Q 045222 662 CAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGW 741 (1049)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW 741 (1049)
++||+++
T Consensus 321 ------------------------------------------~iGGf~~------------------------------- 327 (713)
T TIGR03030 321 ------------------------------------------EIGGIAG------------------------------- 327 (713)
T ss_pred ------------------------------------------HcCCCCC-------------------------------
Confidence 3576654
Q ss_pred ccccccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhhhHh
Q 045222 742 IYGSVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLERLS 821 (1049)
Q Consensus 742 ~ygsvTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QRL~ 821 (1049)
+++|||++++++||++||+++|+++... .|++|+|++++++||.||++|++|+++. ++|++ .++|++.||++
T Consensus 328 --~~vtED~~l~~rL~~~G~~~~y~~~~~~--~g~~p~sl~~~~~Qr~RWa~G~~qi~~~-~~pl~---~~gl~~~qrl~ 399 (713)
T TIGR03030 328 --ETVTEDAETALKLHRRGWNSAYLDRPLI--AGLAPETLSGHIGQRIRWAQGMMQIFRL-DNPLL---KRGLSFPQRLC 399 (713)
T ss_pred --CCcCcHHHHHHHHHHcCCeEEEeccccc--cccCCCCHHHHHHHHHHHhcChHHHHhh-hCccc---cCCCCHHHHHH
Confidence 5899999999999999999999986665 7999999999999999999999999974 58997 68999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhhchHHHHHHHHHHHHHHHHHhhhhee-eccccccccccchhHHHhhh
Q 045222 822 YINACLYPFTSIPLLVYCALPAVCLLTGKFITPELTAVAGLYFMSLFMCIFATSILEMR-WSGVGIDEWWRNEQFWVIGG 900 (1049)
Q Consensus 822 Yl~s~ly~l~sl~~liylllP~l~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~r-wsGvsi~~wWr~e~~W~I~~ 900 (1049)
|+++++||+.++++++|+++|++++++|..+++.... .++++++++++.+++.+. ..|.....||+ |.|-.+
T Consensus 400 y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~----~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 472 (713)
T TIGR03030 400 YLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASAL----EILAYALPHMLHSLLTNSYLFGRVRWPFWS-EVYETV-- 472 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCHH----HHHHHHHHHHHHHHHHHHHHcCCeecchHH-HHHHHH--
Confidence 9999999999999999999999999999998886321 123344555555555533 33444456774 544322
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCeEeccCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhH
Q 045222 901 ISAHPVAVFQGLLKVLAGVDTDFTVTSKAGDVEAFSELYAFKWTTLLIPPTTLLIINLVGMVAGVSNAINNGHESWGLLF 980 (1049)
Q Consensus 901 ~sa~LfAv~~aLlkvl~g~~~~F~VT~K~~~~~~~~~ly~f~wt~l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~~l~ 980 (1049)
.+ ++.+...+.++|++++.+|+||+|+...+.. ..+.+++|.++++++|++|+++|+++.+.... ...
T Consensus 473 -~~-~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~------~~~~~~~p~~~l~~l~~~~~~~~~~~~~~~~~----~~~ 540 (713)
T TIGR03030 473 -LA-VYLLPPVLVTLLNPKKPKFNVTPKGELLDED------YFSPLSRPYLILFALILAGLAFGLYRIYGYPI----ERG 540 (713)
T ss_pred -HH-HHHHHHHHHHHhCcCCCCceecCCCcccccc------ccchHHHHHHHHHHHHHHHHHHHHHHHhcCcc----ccc
Confidence 22 2344455666788899999999998753221 12358899999999999999999999864332 234
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 045222 981 GKLFFALWVIIHLFPFLKGL 1000 (1049)
Q Consensus 981 g~l~~~~Wvi~~l~Pf~~gL 1000 (1049)
+.+++.+|.++|++-...++
T Consensus 541 ~~~~~~~w~~~n~~~~~~~~ 560 (713)
T TIGR03030 541 VLLVVLGWNLLNLILLGAAL 560 (713)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 56899999999998777777
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=9.2e-67 Score=635.31 Aligned_cols=472 Identities=26% Similarity=0.413 Sum_probs=373.7
Q ss_pred HHHHHHHHHHHHHhhhhcccccch----hHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhccCCCCCCCCC
Q 045222 277 IVIIRLVVLGFFFHYRVMHPVKDA----YALWVISVICEVWFALSWILDQFPKWLPIDRETYLDRLSLRYEKPGQPSKLM 352 (1049)
Q Consensus 277 ~iv~~lv~l~~yl~wRi~~~~~~a----~~lWl~~~i~Eiwfa~~wiL~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lP 352 (1049)
++++.+++.+.|++||++.+++.. ..+.++++++|+++.++.++..+..+.|..|.+. ..+...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCCC
Confidence 566777888999999999887633 3456778999999888888888887778877532 1122345789
Q ss_pred ceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhh
Q 045222 353 PVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKD 432 (1049)
Q Consensus 353 ~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~ 432 (1049)
+|||+||||| |++.++++||.+++++|||++|++|||+|||+++.| .++|
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t-------~~la-------------------- 310 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF-------RQFA-------------------- 310 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH-------HHHH--------------------
Confidence 9999999999 999999999999999999999999999999998621 1111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhcc
Q 045222 433 KVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSA 512 (1049)
Q Consensus 433 ~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSa 512 (1049)
++ + .+.|+.|++ +.|+||||+|++++
T Consensus 311 -----------------~~----------------~--------------~v~yI~R~~----n~~gKAGnLN~aL~--- 336 (852)
T PRK11498 311 -----------------QE----------------V--------------GVKYIARPT----HEHAKAGNINNALK--- 336 (852)
T ss_pred -----------------HH----------------C--------------CcEEEEeCC----CCcchHHHHHHHHH---
Confidence 11 1 168998876 67899999999999
Q ss_pred CCCCCCEEEEecCCCCCChHHHHHHHHHh-hcCCCCCceeEEEecCccccCCCCcc-------ccchhhhhhHhhhcccc
Q 045222 513 VLTNSPYLLNLDCDHYINNSKALREAMCF-MMDPLLGKRVCYVQFPRRFDGINQDD-------RFANRKTVFFDINMKGL 584 (1049)
Q Consensus 513 v~tng~~Il~lDaD~~~~~p~~Lr~~m~f-f~Dp~~g~~v~~VQ~PQ~F~nid~~D-------~yan~~~vFfdi~~~gl 584 (1049)
.++||||+++|||++ +++++|+++|++ +.|| ++|+||+||.|+|.|+.. .+.+++..||+..++|+
T Consensus 337 -~a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~ 410 (852)
T PRK11498 337 -YAKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGN 410 (852)
T ss_pred -hCCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHH
Confidence 579999999999999 799999999986 4788 799999999999987642 24577889999999999
Q ss_pred ccCCCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccc
Q 045222 585 DGIQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAW 664 (1049)
Q Consensus 585 Dg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1049)
|.+++.++|||++++||+||
T Consensus 411 ~~~~a~~~~Gs~aviRReaL------------------------------------------------------------ 430 (852)
T PRK11498 411 DMWDATFFCGSCAVIRRKPL------------------------------------------------------------ 430 (852)
T ss_pred HhhcccccccceeeeEHHHH------------------------------------------------------------
Confidence 99999999999999999887
Q ss_pred cchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccc
Q 045222 665 EGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYG 744 (1049)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~yg 744 (1049)
+|+||+++ +
T Consensus 431 --------------------------------------eeVGGfd~---------------------------------~ 439 (852)
T PRK11498 431 --------------------------------------DEIGGIAV---------------------------------E 439 (852)
T ss_pred --------------------------------------HHhcCCCC---------------------------------C
Confidence 24687765 4
Q ss_pred cccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhhhHhHHh
Q 045222 745 SVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLERLSYIN 824 (1049)
Q Consensus 745 svTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QRL~Yl~ 824 (1049)
++|||++++++||++||+++|++++.. .|++|+|++++++||.|||+|++|+++ +++|++ .++|++.||++|++
T Consensus 440 titED~dlslRL~~~Gyrv~yl~~~~a--~glaPesl~~~~~QR~RWarG~lQi~r-~~~pl~---~~gL~~~qRl~y~~ 513 (852)
T PRK11498 440 TVTEDAHTSLRLHRRGYTSAYMRIPQA--AGLATESLSAHIGQRIRWARGMVQIFR-LDNPLT---GKGLKLAQRLCYAN 513 (852)
T ss_pred ccCccHHHHHHHHHcCCEEEEEeccce--eEECCCCHHHHHHHHHHHHHHHHHHHH-HhChhc---cCCCCHHHHHHHHH
Confidence 899999999999999999999987777 799999999999999999999999997 678997 78999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCcchhhchHHHHHHHHHHHHHHHHHhhhheee-ccccccccccchhHHHhhhhhh
Q 045222 825 ACLYPFTSIPLLVYCALPAVCLLTGKFITPELTAVAGLYFMSLFMCIFATSILEMRW-SGVGIDEWWRNEQFWVIGGISA 903 (1049)
Q Consensus 825 s~ly~l~sl~~liylllP~l~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~rw-sGvsi~~wWr~e~~W~I~~~sa 903 (1049)
+++||+.++++++|+++|++|+++|..++.+... . ++++++++++...+...| +|.....||+ |. +..+.+
T Consensus 514 ~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~~---~-i~~y~lP~~~~~~l~~~~~~g~~r~~~ws-ei---ye~v~a 585 (852)
T PRK11498 514 AMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPAL---M-IALFVLPHMIHASLTNSRIQGKYRHSFWS-EI---YETVLA 585 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChheeCChH---H-HHHHHHHHHHHHHHHHHHhcCcchHhHHH-HH---HHHHHH
Confidence 9999999999999999999999999988754221 1 222334444444333322 2332334442 33 333444
Q ss_pred HHHHHHHHHHHHHcCCCCCeEeccCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHH
Q 045222 904 HPVAVFQGLLKVLAGVDTDFTVTSKAGDVEAFSELYAFKWTTLLIPPTTLLIINLVGMVAGVSNAINNGHESWGLLFGKL 983 (1049)
Q Consensus 904 ~LfAv~~aLlkvl~g~~~~F~VT~K~~~~~~~~~ly~f~wt~l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~~l~g~l 983 (1049)
+.++. ..+..++++++.+|+||+|+...+. + .|.|. +..|+++++++|++|+++|+++.+.+.. ....+.+
T Consensus 586 ~~l~~-~~~~~ll~p~~~~F~VTpKg~~~~~--~--~~~~~-~~~P~~~L~~L~l~gl~~g~~r~~~~~~---~~~~~~~ 656 (852)
T PRK11498 586 WYIAP-PTTVALFNPHKGKFNVTAKGGLVEE--E--YVDWV-ISRPYIFLVLLNLVGVAVGIWRYFYGPP---NEILTVI 656 (852)
T ss_pred HHHHH-HHHHHHcCccCCCcccCCCCccccc--c--ceehH-HHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchhhh
Confidence 44443 3344477889999999999865332 1 24554 5789999999999999999999876421 2234567
Q ss_pred HHHHHHHHHHHHHHhhh
Q 045222 984 FFALWVIIHLFPFLKGL 1000 (1049)
Q Consensus 984 ~~~~Wvi~~l~Pf~~gL 1000 (1049)
++.+|+++|++-...++
T Consensus 657 ~~~~W~~~nl~~l~~a~ 673 (852)
T PRK11498 657 VSLVWVFYNLIILGGAV 673 (852)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999987766665
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=2.8e-44 Score=316.05 Aligned_cols=80 Identities=74% Similarity=1.460 Sum_probs=42.1
Q ss_pred CCccCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccccCCcccCCCCccccc
Q 045222 28 ARPLQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRLKGSARVEGDEEEDDI 107 (1049)
Q Consensus 28 ~~~~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kgsprv~gd~~~~~~ 107 (1049)
+||++++++|+||||||+||+++| ||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~-Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~ 79 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTEN-GEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDV 79 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SS-SSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S
T ss_pred CcChhhcCCcccccccCccccCCC-CCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCC
Confidence 589999999999999999999999 9999999999999999999999999999999999999999999999999999887
Q ss_pred h
Q 045222 108 D 108 (1049)
Q Consensus 108 ~ 108 (1049)
|
T Consensus 80 d 80 (80)
T PF14569_consen 80 D 80 (80)
T ss_dssp -
T ss_pred C
Confidence 5
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=2.3e-36 Score=364.73 Aligned_cols=354 Identities=18% Similarity=0.212 Sum_probs=238.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccch-h--------HHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhccC
Q 045222 274 YRMIVIIRLVVLGFFFHYRVMHPVKDA-Y--------ALWVISVICEVWFALSWILDQFPKWLPIDRETYLDRLSLRYEK 344 (1049)
Q Consensus 274 yR~~iv~~lv~l~~yl~wRi~~~~~~a-~--------~lWl~~~i~Eiwfa~~wiL~q~~kw~Pv~R~t~~drL~~r~~~ 344 (1049)
-|+++++..++...|..|+....++.. . .+..+.+..+.+.+..-++..+.... .|... .+...-..
T Consensus 41 rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~~ 116 (691)
T PRK05454 41 RRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAAG 116 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCccccc
Confidence 567777777778889999987654321 1 11122223333322222233222111 11111 01000001
Q ss_pred CCCCCCCCceEEEEecCCCCCCchHH----HHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCch
Q 045222 345 PGQPSKLMPVDIFVSTVDPIKEPSLV----TANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPE 420 (1049)
Q Consensus 345 ~~~~~~lP~VDVfV~t~nP~kEpp~v----v~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe 420 (1049)
+.+....|+|+|+||+|| |++.. ++.|+.|+.+++|| ++++++|+||++++.+-.
T Consensus 117 ~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~----------------- 175 (691)
T PRK05454 117 DPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA----------------- 175 (691)
T ss_pred CCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH-----------------
Confidence 123456899999999999 99875 45556677779998 479999999999863210
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCCh
Q 045222 421 WYFAQKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKK 500 (1049)
Q Consensus 421 ~YF~~k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~K 500 (1049)
.|++ .++++..+ ++ .-+++.|..|++ |.++|
T Consensus 176 -------------------~e~~----~~~~L~~~------------~~----------~~~~i~yr~R~~----n~~~K 206 (691)
T PRK05454 176 -------------------AEEA----AWLELRAE------------LG----------GEGRIFYRRRRR----NVGRK 206 (691)
T ss_pred -------------------HHHH----HHHHHHHh------------cC----------CCCcEEEEECCc----CCCcc
Confidence 1111 12232211 11 014689988877 67899
Q ss_pred HHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCceeEEEecCccccCCCCccccch----hhhh
Q 045222 501 AGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMM-DPLLGKRVCYVQFPRRFDGINQDDRFAN----RKTV 575 (1049)
Q Consensus 501 AGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~-Dp~~g~~v~~VQ~PQ~F~nid~~D~yan----~~~v 575 (1049)
|||+|.+++.++ .+++||+++|||++ +.+|+|++++.+|. || ++|.||+|+.+.|.+. .++. ...+
T Consensus 207 aGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m~~dP----~vGlVQt~~~~~n~~s--lfaR~qqf~~~~ 277 (691)
T PRK05454 207 AGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLMEANP----RAGLIQTLPVAVGADT--LFARLQQFATRV 277 (691)
T ss_pred HHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHHhhCc----CEEEEeCCccCcCCCC--HHHHHHHHHHHH
Confidence 999999999654 57899999999999 68999999999885 88 8999999999998753 2221 1335
Q ss_pred hHhhhccccccCC--CcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhh
Q 045222 576 FFDINMKGLDGIQ--GPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKF 653 (1049)
Q Consensus 576 Ffdi~~~glDg~q--gp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~ 653 (1049)
+.++...|++.+| ...|+|+|+++||+|+... | +...
T Consensus 278 y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~-------------------------~-glp~--------------- 316 (691)
T PRK05454 278 YGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEH-------------------------C-GLPP--------------- 316 (691)
T ss_pred HHHHHHhhhhhhccCccccccceEEEEHHHHHHh-------------------------c-CCcc---------------
Confidence 5556677877666 3568999999999998531 1 1000
Q ss_pred hcccCCccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccc
Q 045222 654 AMKDTAPMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKT 733 (1049)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T 733 (1049)
+.+.|
T Consensus 317 ------------------------------------------------L~g~~--------------------------- 321 (691)
T PRK05454 317 ------------------------------------------------LPGRG--------------------------- 321 (691)
T ss_pred ------------------------------------------------ccccC---------------------------
Confidence 01123
Q ss_pred ccccccccccccccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCC
Q 045222 734 EWGKEVGWIYGSVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGG 813 (1049)
Q Consensus 734 ~WG~evGW~ygsvTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~ 813 (1049)
||..+++|||+++|.+|+++|||++|+++... .++++|+|+.++++||.||++|++|++.. ++ .++
T Consensus 322 ------p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~~-~~ee~P~tl~~~~~qr~RW~~G~lQ~l~~----l~---~~g 387 (691)
T PRK05454 322 ------PFGGHILSHDFVEAALMRRAGWGVWLAPDLPG-SYEELPPNLLDELKRDRRWCQGNLQHLRL----LL---AKG 387 (691)
T ss_pred ------CCCCCcccHHHHHHHHHHHCCCEEEEcCcccc-ccccCCCCHHHHHHHHHHHHhchHHHHHH----HH---hcC
Confidence 34446999999999999999999999965322 27999999999999999999999999852 33 578
Q ss_pred CChhhhHhHHhhhhhhhhHHHHHHHHH
Q 045222 814 LKWLERLSYINACLYPFTSIPLLVYCA 840 (1049)
Q Consensus 814 Ltl~QRL~Yl~s~ly~l~sl~~liyll 840 (1049)
+++.+|+.|++.++.++.+...+++++
T Consensus 388 l~~~~R~~~l~g~~~yl~~P~wll~l~ 414 (691)
T PRK05454 388 LHPVSRLHFLTGIMSYLSAPLWLLFLL 414 (691)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988877776655444443
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=2e-34 Score=312.12 Aligned_cols=244 Identities=19% Similarity=0.276 Sum_probs=184.8
Q ss_pred eEEEEecCCCCCCchHHHHHHHHHHHc----CCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhh
Q 045222 354 VDIFVSTVDPIKEPSLVTANTVLSILA----VDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDY 429 (1049)
Q Consensus 354 VDVfV~t~nP~kEpp~vv~~Tvls~la----lDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~ 429 (1049)
|+|+||+|| |+|.++.+||.+++. +||+. +++|||+|||+++ +.
T Consensus 1 ~SIliP~~n---e~~~~l~~~l~~~~~~~~~~~~~~-~~eI~vldD~~d~--------------------~~-------- 48 (254)
T cd04191 1 TAIVMPVYN---EDPARVFAGLRAMYESLAKTGLAD-HFDFFILSDTRDP--------------------DI-------- 48 (254)
T ss_pred CEEEEeCCC---CCHHHHHHHHHHHHHHHHhcCCcC-ceEEEEECCCCCh--------------------HH--------
Confidence 689999999 999999999999775 56632 4999999999874 11
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHH
Q 045222 430 LKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVR 509 (1049)
Q Consensus 430 lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lr 509 (1049)
.+.|+..+.+..+++ + +.++++|+.|++ +.|+||||||+++.
T Consensus 49 --------~~~~~~~~~~l~~~~----------------~----------~~~~v~~~~r~~----~~g~Kag~l~~~~~ 90 (254)
T cd04191 49 --------WLAEEAAWLDLCEEL----------------G----------AQGRIYYRRRRE----NTGRKAGNIADFCR 90 (254)
T ss_pred --------HHHHHHHHHHHHHHh----------------C----------CCCcEEEEEcCC----CCCccHHHHHHHHH
Confidence 011112222222221 1 136799999988 56789999999998
Q ss_pred hccCCCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCceeEEEecCccccCCCCc-ccc-chhhhhhHhhhcccccc
Q 045222 510 VSAVLTNSPYLLNLDCDHYINNSKALREAMCFMM-DPLLGKRVCYVQFPRRFDGINQD-DRF-ANRKTVFFDINMKGLDG 586 (1049)
Q Consensus 510 vSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~-Dp~~g~~v~~VQ~PQ~F~nid~~-D~y-an~~~vFfdi~~~glDg 586 (1049)
.. .++++||+++|||+. +.|++|++++.+|. || +||.||+||+|.|.+.- .+. +-.+..|..+.+.|++.
T Consensus 91 ~~--~~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (254)
T cd04191 91 RW--GSRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKLIGAETLFARLQQFANRLYGPVFGRGLAA 163 (254)
T ss_pred Hh--CCCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCceeECCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 268899999999999 69999999999885 88 89999999999987642 111 12356667777888877
Q ss_pred CCC--cccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccc
Q 045222 587 IQG--PINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAW 664 (1049)
Q Consensus 587 ~qg--p~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1049)
+++ .+++||+.++||+||... |.
T Consensus 164 ~~~~~~~~~G~~~~~Rr~al~~~-------------------------~~------------------------------ 188 (254)
T cd04191 164 WQGGEGNYWGHNAIIRVAAFMEH-------------------------CA------------------------------ 188 (254)
T ss_pred hcCCccCccceEEEEEHHHHHHh-------------------------cC------------------------------
Confidence 654 588999999999998421 00
Q ss_pred cchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccc
Q 045222 665 EGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYG 744 (1049)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~yg 744 (1049)
+.++||+. ||..+
T Consensus 189 -------------------------------------~~~i~g~g------------------------------~~~~~ 201 (254)
T cd04191 189 -------------------------------------LPVLPGRP------------------------------PFGGH 201 (254)
T ss_pred -------------------------------------CccccCCC------------------------------CCCCC
Confidence 01233321 35567
Q ss_pred cccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchh
Q 045222 745 SVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVE 797 (1049)
Q Consensus 745 svTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQ 797 (1049)
+++||+++|++++.+||+++|.+..... ++++|+|++++++||.||++|++|
T Consensus 202 ~l~eD~~l~~~~~~~G~ri~~~~~~~~~-~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 202 ILSHDFVEAALMRRAGWEVRLAPDLEGS-YEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred eecHHHHHHHHHHHcCCEEEEccCCcce-EeECCCCHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999654432 689999999999999999999998
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-32 Score=311.10 Aligned_cols=233 Identities=28% Similarity=0.345 Sum_probs=171.6
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhh
Q 045222 351 LMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYL 430 (1049)
Q Consensus 351 lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~l 430 (1049)
+|.|||+||+|| |++.++++|+.|++++|||. ++|+|+|||++|.|++-+.|.
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~~---------------------- 105 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEEL---------------------- 105 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHHH----------------------
Confidence 699999999999 99999999999999999998 789999999998443321111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHh
Q 045222 431 KDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRV 510 (1049)
Q Consensus 431 k~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrv 510 (1049)
.++. + |++..+..++ .+++|++|+|.++.
T Consensus 106 ------------------~~~~----------------~------------~~~~~~~~~~----~~~gK~~al~~~l~- 134 (439)
T COG1215 106 ------------------GAEY----------------G------------PNFRVIYPEK----KNGGKAGALNNGLK- 134 (439)
T ss_pred ------------------Hhhc----------------C------------cceEEEeccc----cCccchHHHHHHHh-
Confidence 0110 0 2233331112 68899999999999
Q ss_pred ccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhhhhHh-----hhccccc
Q 045222 511 SAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFD-----INMKGLD 585 (1049)
Q Consensus 511 Sav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfd-----i~~~glD 585 (1049)
.+.+|+|+++|||++ +.||+|+++++.|.|+. .++.+|.||.+.+.++.........+.|. ....+.+
T Consensus 135 ---~~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (439)
T COG1215 135 ---RAKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASK 207 (439)
T ss_pred ---hcCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhh
Confidence 567999999999999 79999999999999874 44799999999887641111111111111 1111112
Q ss_pred cCCCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCcccccc
Q 045222 586 GIQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWE 665 (1049)
Q Consensus 586 g~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1049)
+-...++.|++.+
T Consensus 208 ~g~~~~~~G~~~~------------------------------------------------------------------- 220 (439)
T COG1215 208 GGLISFLSGSSSA------------------------------------------------------------------- 220 (439)
T ss_pred cCCeEEEcceeee-------------------------------------------------------------------
Confidence 2133444444444
Q ss_pred chhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccccccccccc
Q 045222 666 GIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGS 745 (1049)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygs 745 (1049)
|+++++++.||+. ..+
T Consensus 221 -------------------------------~rr~aL~~~g~~~---------------------------------~~~ 236 (439)
T COG1215 221 -------------------------------FRRSALEEVGGWL---------------------------------EDT 236 (439)
T ss_pred -------------------------------EEHHHHHHhCCCC---------------------------------CCc
Confidence 4445555666544 469
Q ss_pred ccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhh
Q 045222 746 VTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLS 801 (1049)
Q Consensus 746 vTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~ls 801 (1049)
+|||.+++++||.+|||++|+++... .+++|+|+.++++||.||++|++|++..
T Consensus 237 i~ED~~lt~~l~~~G~~~~~~~~~~~--~~~~p~t~~~~~~Qr~RW~~g~~~~~~~ 290 (439)
T COG1215 237 ITEDADLTLRLHLRGYRVVYVPEAIV--WTEAPETLKELWRQRLRWARGGLQVLLL 290 (439)
T ss_pred eeccHHHHHHHHHCCCeEEEeecceE--eeeCcccHHHHHHHHHHHHcccceeeeh
Confidence 99999999999999999999987655 8999999999999999999999999974
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=100.00 E-value=3.1e-31 Score=307.20 Aligned_cols=231 Identities=22% Similarity=0.219 Sum_probs=167.9
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKID 428 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~ 428 (1049)
...|.|+|+||+|| |+. .+.+||.|+++++||. ++|+|+|||+++.|.+.+.+.
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp~--~eIivVdDgs~D~t~~~~~~~-------------------- 125 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYTN--IEVIAINDGSSDDTAQVLDAL-------------------- 125 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCCC--eEEEEEECCCCccHHHHHHHH--------------------
Confidence 35799999999999 985 6789999999999994 899999999998543222110
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHH
Q 045222 429 YLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALV 508 (1049)
Q Consensus 429 ~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~l 508 (1049)
.+ +.|++.++.+++ ..+||+|+|+++
T Consensus 126 ---------------------~~----------------------------~~~~v~vv~~~~-----n~Gka~AlN~gl 151 (444)
T PRK14583 126 ---------------------LA----------------------------EDPRLRVIHLAH-----NQGKAIALRMGA 151 (444)
T ss_pred ---------------------HH----------------------------hCCCEEEEEeCC-----CCCHHHHHHHHH
Confidence 00 114466666543 346999999999
Q ss_pred HhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEEecCccccCCCCc-ccc-chhhhhhHhhhccccc
Q 045222 509 RVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYVQFPRRFDGINQD-DRF-ANRKTVFFDINMKGLD 585 (1049)
Q Consensus 509 rvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~VQ~PQ~F~nid~~-D~y-an~~~vFfdi~~~glD 585 (1049)
+ .+++|+|+++|||++ ++|++|++++..| .|| +++.||..++..|.+.. .+. ..+...++....++.+
T Consensus 152 ~----~a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 222 (444)
T PRK14583 152 A----AARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----RTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQR 222 (444)
T ss_pred H----hCCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----CeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 8 478999999999999 7999999999755 566 79999998776543211 111 1122233333333333
Q ss_pred cCCCccc-ccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccc
Q 045222 586 GIQGPIN-VGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAW 664 (1049)
Q Consensus 586 g~qgp~y-vGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1049)
-.+..+. .|++++|||
T Consensus 223 ~~g~~~~~sG~~~~~rr--------------------------------------------------------------- 239 (444)
T PRK14583 223 VYGQVFTVSGVVAAFRR--------------------------------------------------------------- 239 (444)
T ss_pred HhCCceEecCceeEEEH---------------------------------------------------------------
Confidence 3322222 233334444
Q ss_pred cchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccc
Q 045222 665 EGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYG 744 (1049)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~yg 744 (1049)
++++++||+++ +
T Consensus 240 -----------------------------------~al~~vGg~~~---------------------------------~ 251 (444)
T PRK14583 240 -----------------------------------RALADVGYWSP---------------------------------D 251 (444)
T ss_pred -----------------------------------HHHHHcCCCCC---------------------------------C
Confidence 44456776554 5
Q ss_pred cccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhh
Q 045222 745 SVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLS 801 (1049)
Q Consensus 745 svTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~ls 801 (1049)
+++||++++++|+.+||++.|++.... ++++|+|+.++++||.||++|.+|++++
T Consensus 252 ~i~ED~dl~~rl~~~G~~i~~~p~a~~--~~~~p~t~~~~~~Qr~RW~~G~~~~~~~ 306 (444)
T PRK14583 252 MITEDIDISWKLQLKHWSVFFEPRGLC--WILMPETLRGLWKQRLRWAQGGAEVFLK 306 (444)
T ss_pred cccccHHHHHHHHHcCCeEEEeeccEE--eeeCCCCHHHHHHHHHHHhCcHHHHHHH
Confidence 899999999999999999999975554 8999999999999999999999999974
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.97 E-value=2.2e-29 Score=291.69 Aligned_cols=288 Identities=15% Similarity=0.155 Sum_probs=193.2
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhh
Q 045222 348 PSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKI 427 (1049)
Q Consensus 348 ~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~ 427 (1049)
++.+|.|+|+||+|| |+ ..+.++|.|+++++||.++++|+|+|||++|.|.+.+.+.+
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------------------ 102 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------------------ 102 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------------------
Confidence 357899999999999 88 68999999999999999999999999999986543222110
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHH
Q 045222 428 DYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNAL 507 (1049)
Q Consensus 428 ~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~ 507 (1049)
+ +.|++..+.-++ .++||+|+|++
T Consensus 103 -----------------------~----------------------------~~~~v~v~~~~~-----~~Gka~AlN~g 126 (439)
T TIGR03111 103 -----------------------N----------------------------EFPGLSLRYMNS-----DQGKAKALNAA 126 (439)
T ss_pred -----------------------H----------------------------hCCCeEEEEeCC-----CCCHHHHHHHH
Confidence 0 012232222222 36899999999
Q ss_pred HHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCceeEEEecCccccCCCCccc-------cchhhhhhHhh
Q 045222 508 VRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMM-DPLLGKRVCYVQFPRRFDGINQDDR-------FANRKTVFFDI 579 (1049)
Q Consensus 508 lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~-Dp~~g~~v~~VQ~PQ~F~nid~~D~-------yan~~~vFfdi 579 (1049)
++ .++++||+++|+|++ ++|++|++++..|. || +++.|+..+.-. .+..+. +..++ -+++.
T Consensus 127 l~----~s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~----~v~~v~g~~~~~-~~~~~~~~~~~~~~~~~~-~~~~y 195 (439)
T TIGR03111 127 IY----NSIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP----DIHAMTGVILTD-KELIEKTKGRFLKLIRRC-EYFEY 195 (439)
T ss_pred HH----HccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----CeEEEEeEEecC-chhhhhhcchhhhHhHHh-HHHHH
Confidence 99 478999999999999 69999999998775 77 566665443211 110000 00000 01111
Q ss_pred hccccccCCCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCC
Q 045222 580 NMKGLDGIQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTA 659 (1049)
Q Consensus 580 ~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~ 659 (1049)
.. ..+.|. +.. ...+ .-++
T Consensus 196 ~~--------------------~~l~~r-~~~--s~~~-------~~~~------------------------------- 214 (439)
T TIGR03111 196 AQ--------------------AFLAGR-NFE--SQVN-------SLFT------------------------------- 214 (439)
T ss_pred HH--------------------HHHhhh-HHH--HhcC-------CeEE-------------------------------
Confidence 00 000000 000 0000 0000
Q ss_pred ccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccccc
Q 045222 660 PMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEV 739 (1049)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~ev 739 (1049)
--|....|+++++++.||+++
T Consensus 215 ------------------------------~sGa~~~~Rr~~l~~vggf~~----------------------------- 235 (439)
T TIGR03111 215 ------------------------------LSGAFSAFRRETILKTQLYNS----------------------------- 235 (439)
T ss_pred ------------------------------EccHHHhhhHHHHHHhCCCCC-----------------------------
Confidence 014455677778888898765
Q ss_pred ccccccccchHHHHHHHHH-CCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhh
Q 045222 740 GWIYGSVTKDMLTGLIMHC-HGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLE 818 (1049)
Q Consensus 740 GW~ygsvTEDi~Tg~rLh~-rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~Q 818 (1049)
++++||++++++++. .|+|..|+.+.. ++..+|+|++++++||.||++|.+|++....++.. .++.++.+
T Consensus 236 ----~~i~ED~~l~~rl~~~~g~kv~~~~~a~--~~~~~p~t~~~~~~QR~RW~rG~~qv~~~~~~~~~---~~~~~~~~ 306 (439)
T TIGR03111 236 ----ETVGEDTDMTFQIRELLDGKVYLCENAI--FYVDPIDGLNKLYTQRQRWQRGELEVSHMFFESAN---KSIKGFFS 306 (439)
T ss_pred ----CCcCccHHHHHHHHHhcCCeEEECCCCE--EEEECCcCHHHHHHHHHHHhccHHHHHHHHHhhhh---hchhhhhh
Confidence 489999999999985 588988886444 37899999999999999999999999964333332 34566777
Q ss_pred hHhHHhhhhhhhhHHHHHHHHHHHHHHHHhCCcch
Q 045222 819 RLSYINACLYPFTSIPLLVYCALPAVCLLTGKFIT 853 (1049)
Q Consensus 819 RL~Yl~s~ly~l~sl~~liylllP~l~LltG~~ii 853 (1049)
++.+...+..+...++++++.++++++.+++..+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
T TIGR03111 307 NFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVK 341 (439)
T ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 76665555566667888888888888888876544
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.97 E-value=5.8e-29 Score=284.51 Aligned_cols=234 Identities=26% Similarity=0.284 Sum_probs=166.4
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKID 428 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~ 428 (1049)
...|.|+|+||+|| |+ ..+.+|+.|+++++|| +++|+|+|||++|.|.+.+.
T Consensus 51 ~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~---------------------- 102 (420)
T PRK11204 51 KEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILD---------------------- 102 (420)
T ss_pred CCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHH----------------------
Confidence 46899999999999 87 5789999999999999 47999999999974422111
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHH
Q 045222 429 YLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALV 508 (1049)
Q Consensus 429 ~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~l 508 (1049)
++. .+.|++.++.+++ +.+||+|+|.++
T Consensus 103 ----------------------~~~-------------------------~~~~~v~~i~~~~-----n~Gka~aln~g~ 130 (420)
T PRK11204 103 ----------------------RLA-------------------------AQIPRLRVIHLAE-----NQGKANALNTGA 130 (420)
T ss_pred ----------------------HHH-------------------------HhCCcEEEEEcCC-----CCCHHHHHHHHH
Confidence 110 0125578887654 346999999999
Q ss_pred HhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEEecCccccCCCCccccchhhhhhHhhhccccccC
Q 045222 509 RVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDINMKGLDGI 587 (1049)
Q Consensus 509 rvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~ 587 (1049)
+ .+++|||+++|+|.+ ++|++|.+++..| .|| +++.||...+..|... ..+..+...|...
T Consensus 131 ~----~a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~----~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~------- 192 (420)
T PRK11204 131 A----AARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP----RVGAVTGNPRIRNRST--LLGRIQVGEFSSI------- 192 (420)
T ss_pred H----HcCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----CeEEEECCceeccchh--HHHHHHHHHHHHh-------
Confidence 9 478999999999999 6999999999877 577 7999999877665321 1111111111100
Q ss_pred CCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccch
Q 045222 588 QGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGI 667 (1049)
Q Consensus 588 qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1049)
.|..-+-+..+|.. ++.
T Consensus 193 -------~~~~~~~~~~~~~~------------------~~~-------------------------------------- 209 (420)
T PRK11204 193 -------IGLIKRAQRVYGRV------------------FTV-------------------------------------- 209 (420)
T ss_pred -------hhHHHHHHHHhCCc------------------eEe--------------------------------------
Confidence 00000011111100 000
Q ss_pred hccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccccccccccccc
Q 045222 668 EEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVT 747 (1049)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvT 747 (1049)
-|....|++++++++||+++ ..++
T Consensus 210 -----------------------~G~~~~~rr~~l~~vgg~~~---------------------------------~~~~ 233 (420)
T PRK11204 210 -----------------------SGVITAFRKSALHEVGYWST---------------------------------DMIT 233 (420)
T ss_pred -----------------------cceeeeeeHHHHHHhCCCCC---------------------------------Cccc
Confidence 02333445556667787654 4789
Q ss_pred chHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhh
Q 045222 748 KDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLS 801 (1049)
Q Consensus 748 EDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~ls 801 (1049)
||++++++++.+||++.|+++... +++.|+|++++++||.||++|.+|.++.
T Consensus 234 ED~~l~~rl~~~G~~i~~~p~~~~--~~~~p~t~~~~~~Qr~RW~~G~~~~l~~ 285 (420)
T PRK11204 234 EDIDISWKLQLRGWDIRYEPRALC--WILMPETLKGLWKQRLRWAQGGAEVLLK 285 (420)
T ss_pred chHHHHHHHHHcCCeEEeccccEE--EeECcccHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999976554 8999999999999999999999999974
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.96 E-value=3e-27 Score=277.58 Aligned_cols=266 Identities=19% Similarity=0.218 Sum_probs=184.3
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHH-cCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhh
Q 045222 350 KLMPVDIFVSTVDPIKEPSLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKID 428 (1049)
Q Consensus 350 ~lP~VDVfV~t~nP~kEpp~vv~~Tvls~l-alDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~ 428 (1049)
..|+|+|+||+|| |. .++.+||.+++ ++||| +++|+|.||++++.|.+.+.+.+
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l~------------------- 118 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRLA------------------- 118 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHHH-------------------
Confidence 4899999999999 98 69999999965 78996 58999999999875533222210
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHH
Q 045222 429 YLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALV 508 (1049)
Q Consensus 429 ~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~l 508 (1049)
+ +.|++..+. .+++| .++||+|||.++
T Consensus 119 ------------------~--------------------------------~~p~v~~vv-~~~~g--p~~Ka~aLN~~l 145 (504)
T PRK14716 119 ------------------A--------------------------------RYPRVHLVI-VPHDG--PTSKADCLNWIY 145 (504)
T ss_pred ------------------H--------------------------------HCCCeEEEE-eCCCC--CCCHHHHHHHHH
Confidence 0 124444333 23333 468999999998
Q ss_pred Hhcc--CCCC---CCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccc----cchhhhhhHhh
Q 045222 509 RVSA--VLTN---SPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDR----FANRKTVFFDI 579 (1049)
Q Consensus 509 rvSa--v~tn---g~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~----yan~~~vFfdi 579 (1049)
+... .... .++|+++|||.+ ++|++|+....++.| .++||.|....+.+.+.. |..+....+..
T Consensus 146 ~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~------~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~ 218 (504)
T PRK14716 146 QAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR------HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLK 218 (504)
T ss_pred HHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC------CCEEecceeccCCchhHHHHHHHHHHHHHHHHH
Confidence 7421 0123 499999999999 699999976655543 468999987665433321 22222333444
Q ss_pred hccccccCCCcc-cccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccC
Q 045222 580 NMKGLDGIQGPI-NVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDT 658 (1049)
Q Consensus 580 ~~~glDg~qgp~-yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~ 658 (1049)
.++.++.+++++ ..|||++|||++|-.
T Consensus 219 ~l~~r~~LG~~~~~~Gtg~afRR~aLe~---------------------------------------------------- 246 (504)
T PRK14716 219 DLPVREALGGLIPSAGVGTAFSRRALER---------------------------------------------------- 246 (504)
T ss_pred HHHHHHhcCCccccCCeeEEeEHHHHHH----------------------------------------------------
Confidence 566677787765 578999999888721
Q ss_pred CccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccc
Q 045222 659 APMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKE 738 (1049)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~e 738 (1049)
++.+.||.
T Consensus 247 ------------------------------------------l~~~~GG~------------------------------ 254 (504)
T PRK14716 247 ------------------------------------------LAAERGGQ------------------------------ 254 (504)
T ss_pred ------------------------------------------HHhhcCCC------------------------------
Confidence 01122331
Q ss_pred cccccccccchHHHHHHHHHCCcEEEEecCCCC-------------ccccCCCcCHHHHHhhhheecccc-hhhhhhcc-
Q 045222 739 VGWIYGSVTKDMLTGLIMHCHGWRSIYCIPDRP-------------AFKGPAPINLSVCLHWVLRWALGS-VEVFLSRH- 803 (1049)
Q Consensus 739 vGW~ygsvTEDi~Tg~rLh~rGWrSvY~~~~~~-------------Af~GlaP~tl~~~l~QR~RWA~G~-lQI~lsr~- 803 (1049)
+|..+++|||+++|++|+.+|||++|++.... +.++++|+|++++++||.||++|. +|.....-
T Consensus 255 -~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw 333 (504)
T PRK14716 255 -PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARWIYGIAFQGWERLGW 333 (504)
T ss_pred -CCCCCCcchHHHHHHHHHHCCCEEEEecccccccccccccccccccccccCccCHHHHHHHHHHHHhchHHhhHHhcCC
Confidence 25567999999999999999999999975521 235889999999999999999995 78874211
Q ss_pred -CccccccCCCCChhhhHhHHhhhhh
Q 045222 804 -CPVWYGYGGGLKWLERLSYINACLY 828 (1049)
Q Consensus 804 -~Pl~~g~~~~Ltl~QRL~Yl~s~ly 828 (1049)
.++. .+.+.|++|...+..++-
T Consensus 334 ~~~~~---~~~~~~rdr~~~~~~~~~ 356 (504)
T PRK14716 334 KGPAA---TKYMLWRDRKGLLTNLLL 356 (504)
T ss_pred CCchh---hhhhHHHHHHHHHHHHHH
Confidence 1121 244778888887776553
No 21
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.95 E-value=7.4e-27 Score=283.97 Aligned_cols=269 Identities=19% Similarity=0.258 Sum_probs=180.3
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHH-cCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKI 427 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~l-alDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~ 427 (1049)
.+.|+|+|+||+|| |+ .++.+|+.+++ ++|||+ ++|+|.+|++++.|-+.+.+
T Consensus 60 ~~~~~vsIlVPa~n---E~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD~~T~~~~~~-------------------- 113 (727)
T PRK11234 60 PDEKPLAIMVPAWN---ET-GVIGNMAELAATTLDYEN--YHIFVGTYPNDPATQADVDA-------------------- 113 (727)
T ss_pred CCCCCEEEEEecCc---ch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCChhHHHHHHH--------------------
Confidence 45799999999999 99 69999999987 799997 89999988666533221111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHH
Q 045222 428 DYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNAL 507 (1049)
Q Consensus 428 ~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~ 507 (1049)
+.+ +.|++..|.-++ || .++||+|||.+
T Consensus 114 -----------------l~~--------------------------------~~p~~~~v~~~~-~g--~~gKa~aLN~~ 141 (727)
T PRK11234 114 -----------------VCA--------------------------------RFPNVHKVVCAR-PG--PTSKADCLNNV 141 (727)
T ss_pred -----------------HHH--------------------------------HCCCcEEEEeCC-CC--CCCHHHHHHHH
Confidence 111 123333332222 44 46899999999
Q ss_pred HHhccC-----CCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccc----cchhhhhhHh
Q 045222 508 VRVSAV-----LTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDR----FANRKTVFFD 578 (1049)
Q Consensus 508 lrvSav-----~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~----yan~~~vFfd 578 (1049)
+....- -...++++++|||.+ ++|++|+ .+.+|.++ + ++||.|..-.+...+.. |..+....+.
T Consensus 142 l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~----~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~ 214 (727)
T PRK11234 142 LDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER----K-DLIQIPVYPFEREWTHFTSGTYIDEFAELHG 214 (727)
T ss_pred HHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC----C-CeEeecccCCCccHHHHHHHHHHHHHHHHhh
Confidence 985310 013467888999999 6999998 67778876 4 89999966333222221 3344444555
Q ss_pred hhccccccCCCcc-cccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhccc
Q 045222 579 INMKGLDGIQGPI-NVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKD 657 (1049)
Q Consensus 579 i~~~glDg~qgp~-yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~ 657 (1049)
..+++++.++|++ +.|||++|.|++|
T Consensus 215 ~~~~~~~~lgg~~~l~G~~~af~Rr~l----------------------------------------------------- 241 (727)
T PRK11234 215 KDVPVREALAGQVPSAGVGTCFSRRAV----------------------------------------------------- 241 (727)
T ss_pred hhhHHHHHcCCCcccCCceEEEecccH-----------------------------------------------------
Confidence 6678888887764 4577777744332
Q ss_pred CCccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccc
Q 045222 658 TAPMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGK 737 (1049)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~ 737 (1049)
+++.+.||
T Consensus 242 ------------------------------------------~al~~~gg------------------------------ 249 (727)
T PRK11234 242 ------------------------------------------TALLEDGD------------------------------ 249 (727)
T ss_pred ------------------------------------------HHHHHhcC------------------------------
Confidence 12234442
Q ss_pred ccccccccccchHHHHHHHHHCCcEEEEecCCC---------------------CccccCCCcCHHHHHhhhheeccc-c
Q 045222 738 EVGWIYGSVTKDMLTGLIMHCHGWRSIYCIPDR---------------------PAFKGPAPINLSVCLHWVLRWALG-S 795 (1049)
Q Consensus 738 evGW~ygsvTEDi~Tg~rLh~rGWrSvY~~~~~---------------------~Af~GlaP~tl~~~l~QR~RWA~G-~ 795 (1049)
..+|..+++|||+++|++|+.+||+++|++.+. .+++...|+|+++.++||.||.+| .
T Consensus 250 g~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G~~ 329 (727)
T PRK11234 250 GIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWIIGIV 329 (727)
T ss_pred CCCcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHHHHHcccH
Confidence 124778999999999999999999999997222 335678899999999999999999 6
Q ss_pred hhhhhhccCcccccc--CCCCChhhhHhHHhhhhhhh
Q 045222 796 VEVFLSRHCPVWYGY--GGGLKWLERLSYINACLYPF 830 (1049)
Q Consensus 796 lQI~lsr~~Pl~~g~--~~~Ltl~QRL~Yl~s~ly~l 830 (1049)
+|.+... .|.|. .+=+.|+.|-.++..++..+
T Consensus 330 ~q~~~~~---~w~~~~~~~~~~~r~r~~~~~~~~s~~ 363 (727)
T PRK11234 330 FQGFKTL---GWTSSLTLNYFLWRDRKGAITNFVSFL 363 (727)
T ss_pred HHHHHHh---CCCcchhhhhhhHHhhhHHHHHHHHHH
Confidence 8887422 12110 12244566655555444433
No 22
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.95 E-value=6.6e-27 Score=245.30 Aligned_cols=228 Identities=21% Similarity=0.274 Sum_probs=163.0
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhh
Q 045222 352 MPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLK 431 (1049)
Q Consensus 352 P~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk 431 (1049)
|.|+|+||+|| |+ ..+.++|.|+++++||.++++|+|+|| +++.|++.+.+..
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~---------------------- 53 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIV---------------------- 53 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHH----------------------
Confidence 67999999999 87 688999999999999999999999998 7775544332210
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhc
Q 045222 432 DKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVS 511 (1049)
Q Consensus 432 ~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvS 511 (1049)
.++.+ .-+++.++.+.+++ ++|++|+|.+++
T Consensus 54 ---------------~~~~~----------------------------~~~~i~~~~~~~~~----G~k~~a~n~g~~-- 84 (232)
T cd06437 54 ---------------EEYAA----------------------------QGVNIKHVRRADRT----GYKAGALAEGMK-- 84 (232)
T ss_pred ---------------HHHhh----------------------------cCCceEEEECCCCC----CCchHHHHHHHH--
Confidence 01110 11457888876643 469999999999
Q ss_pred cCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCcc--ccc-hhhhhhHhhhccccccCC
Q 045222 512 AVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDD--RFA-NRKTVFFDINMKGLDGIQ 588 (1049)
Q Consensus 512 av~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D--~ya-n~~~vFfdi~~~glDg~q 588 (1049)
.++++||+++|+|.+ ++|++|++++.++.|| ++++||.+..+.+.+.+- ++. -....+|.....+.....
T Consensus 85 --~a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (232)
T cd06437 85 --VAKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTG 157 (232)
T ss_pred --hCCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcC
Confidence 579999999999999 6899999988888887 799999987666543321 000 000111222111111111
Q ss_pred Ccc-cccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccch
Q 045222 589 GPI-NVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGI 667 (1049)
Q Consensus 589 gp~-yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1049)
..+ .+
T Consensus 158 ~~~~~~-------------------------------------------------------------------------- 163 (232)
T cd06437 158 LFFNFN-------------------------------------------------------------------------- 163 (232)
T ss_pred CeEEec--------------------------------------------------------------------------
Confidence 111 12
Q ss_pred hccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccccccccccccc
Q 045222 668 EEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVT 747 (1049)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvT 747 (1049)
|....|++++++++||++. .++.
T Consensus 164 ------------------------g~~~~~rr~~~~~vgg~~~---------------------------------~~~~ 186 (232)
T cd06437 164 ------------------------GTAGVWRKECIEDAGGWNH---------------------------------DTLT 186 (232)
T ss_pred ------------------------cchhhhhHHHHHHhCCCCC---------------------------------Ccch
Confidence 3334455566667888765 3678
Q ss_pred chHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccc
Q 045222 748 KDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGS 795 (1049)
Q Consensus 748 EDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~ 795 (1049)
||+++++||+.+||+.+|++.... +...|+|+.++++||+||++|.
T Consensus 187 ED~~l~~rl~~~G~~~~~~~~~~v--~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 187 EDLDLSYRAQLKGWKFVYLDDVVV--PAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred hhHHHHHHHHHCCCeEEEecccee--eeeCCcCHHHHHHHHHHhccCC
Confidence 999999999999999999964444 8999999999999999999994
No 23
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.95 E-value=5.6e-27 Score=243.28 Aligned_cols=229 Identities=34% Similarity=0.567 Sum_probs=176.0
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhh
Q 045222 352 MPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLK 431 (1049)
Q Consensus 352 P~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk 431 (1049)
|.|+|+||+|| |++..+++++.|+++++||.++++|+|+|||+++.|.+-+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-------------------------- 51 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-------------------------- 51 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH--------------------------
Confidence 68999999999 8888999999999999999999999999999987432111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhc
Q 045222 432 DKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVS 511 (1049)
Q Consensus 432 ~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvS 511 (1049)
+++.. . .++.++.+++ +.++|+||+|.+++
T Consensus 52 ------------------~~~~~-------------------------~-~~~~~~~~~~----~~~~~~~~~n~~~~-- 81 (234)
T cd06421 52 ------------------AELGV-------------------------E-YGYRYLTRPD----NRHAKAGNLNNALA-- 81 (234)
T ss_pred ------------------HHhhc-------------------------c-cCceEEEeCC----CCCCcHHHHHHHHH--
Confidence 01100 0 0246666654 55789999999999
Q ss_pred cCCCCCCEEEEecCCCCCChHHHHHHHHHhhcC-CCCCceeEEEecCccccCCCCcc----ccchhhhhhHhhhcccccc
Q 045222 512 AVLTNSPYLLNLDCDHYINNSKALREAMCFMMD-PLLGKRVCYVQFPRRFDGINQDD----RFANRKTVFFDINMKGLDG 586 (1049)
Q Consensus 512 av~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~D-p~~g~~v~~VQ~PQ~F~nid~~D----~yan~~~vFfdi~~~glDg 586 (1049)
.++++||+++|+|.+ ++|++|.+++..|.+ | +++.||+++.+.+.+..+ .+......|+.....+...
T Consensus 82 --~a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (234)
T cd06421 82 --HTTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDR 154 (234)
T ss_pred --hCCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999 589999999998876 6 799999999998776542 2233344455544444443
Q ss_pred CCCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccc
Q 045222 587 IQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEG 666 (1049)
Q Consensus 587 ~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1049)
.....+.|++.+|||+++
T Consensus 155 ~~~~~~~g~~~~~r~~~~-------------------------------------------------------------- 172 (234)
T cd06421 155 WGAAFCCGSGAVVRREAL-------------------------------------------------------------- 172 (234)
T ss_pred cCCceecCceeeEeHHHH--------------------------------------------------------------
Confidence 444555555555555544
Q ss_pred hhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccc
Q 045222 667 IEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSV 746 (1049)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsv 746 (1049)
+++||++. ..+
T Consensus 173 ------------------------------------~~ig~~~~---------------------------------~~~ 183 (234)
T cd06421 173 ------------------------------------DEIGGFPT---------------------------------DSV 183 (234)
T ss_pred ------------------------------------HHhCCCCc---------------------------------cce
Confidence 45677654 356
Q ss_pred cchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhh
Q 045222 747 TKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVF 799 (1049)
Q Consensus 747 TEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~ 799 (1049)
.||++++++|+.+||+++|++.... ++..|.++..+++||.||++|.+|++
T Consensus 184 ~eD~~l~~r~~~~g~~i~~~~~~~~--~~~~~~~~~~~~~q~~rw~~~~~~~~ 234 (234)
T cd06421 184 TEDLATSLRLHAKGWRSVYVPEPLA--AGLAPETLAAYIKQRLRWARGMLQIL 234 (234)
T ss_pred eccHHHHHHHHHcCceEEEecCccc--cccCCccHHHHHHHHHHHhcCCeeeC
Confidence 7999999999999999999987665 89999999999999999999999964
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.93 E-value=2.2e-25 Score=236.11 Aligned_cols=233 Identities=23% Similarity=0.265 Sum_probs=165.5
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhh
Q 045222 352 MPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLK 431 (1049)
Q Consensus 352 P~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk 431 (1049)
|.|+|+||+|| |+ ..+.+||.|+++++||.++++|+|+|||+++.|.+.+.+
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~------------------------ 52 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA------------------------ 52 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH------------------------
Confidence 78999999999 87 689999999999999998999999999998754321110
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhc
Q 045222 432 DKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVS 511 (1049)
Q Consensus 432 ~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvS 511 (1049)
+.. ....+++++... ...+|++|+|++++
T Consensus 53 -----------------~~~---------------------------~~~~~i~~~~~~-----~~~G~~~a~n~g~~-- 81 (241)
T cd06427 53 -----------------LRL---------------------------PSIFRVVVVPPS-----QPRTKPKACNYALA-- 81 (241)
T ss_pred -----------------hcc---------------------------CCCeeEEEecCC-----CCCchHHHHHHHHH--
Confidence 100 001234554432 23589999999999
Q ss_pred cCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCcc---ccchhhhhhHhhhccccccCC
Q 045222 512 AVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDD---RFANRKTVFFDINMKGLDGIQ 588 (1049)
Q Consensus 512 av~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D---~yan~~~vFfdi~~~glDg~q 588 (1049)
.++|+||+++|+|.+ ..|++|.+++.+|.+. ..++++||.+..+.+...+- .+......+|+..+++....+
T Consensus 82 --~a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (241)
T cd06427 82 --FARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLG 156 (241)
T ss_pred --hcCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578999999999999 6899999999988621 13899999998877643220 011111122333333332222
Q ss_pred CcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccchh
Q 045222 589 GPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGIE 668 (1049)
Q Consensus 589 gp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1049)
.+..+
T Consensus 157 ~~~~~--------------------------------------------------------------------------- 161 (241)
T cd06427 157 LPIPL--------------------------------------------------------------------------- 161 (241)
T ss_pred Ceeec---------------------------------------------------------------------------
Confidence 22111
Q ss_pred ccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccc
Q 045222 669 EGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTK 748 (1049)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTE 748 (1049)
.|+...|++++++++||+++ ...+|
T Consensus 162 ----------------------~g~~~~~rr~~~~~vgg~~~---------------------------------~~~~e 186 (241)
T cd06427 162 ----------------------GGTSNHFRTDVLRELGGWDP---------------------------------FNVTE 186 (241)
T ss_pred ----------------------CCchHHhhHHHHHHcCCCCc---------------------------------ccchh
Confidence 12333445555667787654 36789
Q ss_pred hHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhh
Q 045222 749 DMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLS 801 (1049)
Q Consensus 749 Di~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~ls 801 (1049)
|++.++|++.+|||.+|+.. .. +...|+|+..+++||.||++|.+|++..
T Consensus 187 D~~l~~rl~~~G~r~~~~~~-~~--~~~~~~~~~~~~~q~~Rw~~g~~~~~~~ 236 (241)
T cd06427 187 DADLGLRLARAGYRTGVLNS-TT--LEEANNALGNWIRQRSRWIKGYMQTWLV 236 (241)
T ss_pred hHHHHHHHHHCCceEEEecc-cc--cccCcHhHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999943 33 6899999999999999999999999963
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.93 E-value=9e-25 Score=228.67 Aligned_cols=231 Identities=26% Similarity=0.375 Sum_probs=161.2
Q ss_pred EEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhh
Q 045222 355 DIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKV 434 (1049)
Q Consensus 355 DVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~ 434 (1049)
+|+||+|| |++..+.+++.|+++++||. ++|+|+|||+++.|..
T Consensus 1 siiip~~n---e~~~~l~~~l~sl~~q~~~~--~eiiVvdd~s~D~t~~------------------------------- 44 (236)
T cd06435 1 SIHVPCYE---EPPEMVKETLDSLAALDYPN--FEVIVIDNNTKDEALW------------------------------- 44 (236)
T ss_pred CeeEeeCC---CcHHHHHHHHHHHHhCCCCC--cEEEEEeCCCCchhHH-------------------------------
Confidence 48999999 98889999999999999996 7899999999874421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCC
Q 045222 435 LASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVL 514 (1049)
Q Consensus 435 ~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~ 514 (1049)
..+++...+. + +++.++..++ +.+.|+||+|.+++.. .
T Consensus 45 --------~~i~~~~~~~----------------~------------~~i~~i~~~~----~~G~~~~a~n~g~~~a--~ 82 (236)
T cd06435 45 --------KPVEAHCAQL----------------G------------ERFRFFHVEP----LPGAKAGALNYALERT--A 82 (236)
T ss_pred --------HHHHHHHHHh----------------C------------CcEEEEEcCC----CCCCchHHHHHHHHhc--C
Confidence 0011100000 0 2366776654 3456999999999953 2
Q ss_pred CCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccc----hhhhhhHhhhccccccCCCc
Q 045222 515 TNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFA----NRKTVFFDINMKGLDGIQGP 590 (1049)
Q Consensus 515 tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~ya----n~~~vFfdi~~~glDg~qgp 590 (1049)
.+++||+++|+|.. ..|++|.+++.+|.+| +++.||+|+.+.+...+ .+. -....+|...++.....+..
T Consensus 83 ~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (236)
T cd06435 83 PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDGEES-LFKRMCYAEYKGFFDIGMVSRNERNAI 156 (236)
T ss_pred CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCCCcc-HHHHHHhHHHHHHHHHHhccccccCce
Confidence 45899999999998 6899999999998877 79999998765432211 110 00001111111111111111
Q ss_pred ccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccchhcc
Q 045222 591 INVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGIEEG 670 (1049)
Q Consensus 591 ~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1049)
+..
T Consensus 157 ~~~----------------------------------------------------------------------------- 159 (236)
T cd06435 157 IQH----------------------------------------------------------------------------- 159 (236)
T ss_pred EEe-----------------------------------------------------------------------------
Confidence 222
Q ss_pred ccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchH
Q 045222 671 IEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDM 750 (1049)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi 750 (1049)
|....|+++++.++||+++ ....||+
T Consensus 160 ---------------------g~~~~~rr~~~~~iGgf~~---------------------------------~~~~eD~ 185 (236)
T cd06435 160 ---------------------GTMCLIRRSALDDVGGWDE---------------------------------WCITEDS 185 (236)
T ss_pred ---------------------cceEEEEHHHHHHhCCCCC---------------------------------ccccchH
Confidence 2333444555667888765 3568999
Q ss_pred HHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhhcc
Q 045222 751 LTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRH 803 (1049)
Q Consensus 751 ~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~ 803 (1049)
+++++++.+||+..|++.... +...|.|+.++++||.||++|++|++. +|
T Consensus 186 dl~~r~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~q~~rw~~g~~~~~~-~~ 235 (236)
T cd06435 186 ELGLRMHEAGYIGVYVAQSYG--HGLIPDTFEAFKKQRFRWAYGAVQILK-KH 235 (236)
T ss_pred HHHHHHHHCCcEEEEcchhhc--cCcCcccHHHHHHHHHHHhcchhhhhh-cc
Confidence 999999999999999976554 789999999999999999999999996 55
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.91 E-value=5.7e-25 Score=228.60 Aligned_cols=224 Identities=27% Similarity=0.387 Sum_probs=133.7
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhh
Q 045222 352 MPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLK 431 (1049)
Q Consensus 352 P~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk 431 (1049)
|.|+|+||+|| |+. .+.++|.|+++++||. ++|+|+||++++.|.+.+.+
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~~--~~v~vvd~~~~~~~~~~~~~------------------------ 50 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYPR--LEVVVVDDGSDDETAEILRA------------------------ 50 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHHT--EEEEEEEE-SSS-GCTTHHH------------------------
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCCC--eEEEEEECCCChHHHHHHHH------------------------
Confidence 78999999999 885 8899999999999954 99999999988643221110
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhc
Q 045222 432 DKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVS 511 (1049)
Q Consensus 432 ~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvS 511 (1049)
+.+.|.. -++.++.+.+++| ...|++|+|.+++.
T Consensus 51 -------------~~~~~~~------------------------------~~v~vi~~~~~~g--~~~k~~a~n~~~~~- 84 (228)
T PF13641_consen 51 -------------LAARYPR------------------------------VRVRVIRRPRNPG--PGGKARALNEALAA- 84 (228)
T ss_dssp -------------HHHTTGG-------------------------------GEEEEE----HH--HHHHHHHHHHHHHH-
T ss_pred -------------HHHHcCC------------------------------CceEEeecCCCCC--cchHHHHHHHHHHh-
Confidence 0000100 0257777654221 23699999999994
Q ss_pred cCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhhhhHhh----hccccccC
Q 045222 512 AVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDI----NMKGLDGI 587 (1049)
Q Consensus 512 av~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi----~~~glDg~ 587 (1049)
..+++|+++|+|.+ ++|++|++++.+|.+| +++.||.+..+++ +.+ .+......++.. ...+....
T Consensus 85 ---~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 154 (228)
T PF13641_consen 85 ---ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAVGGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRAL 154 (228)
T ss_dssp ------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EEEEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B--
T ss_pred ---cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeEeeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhccc
Confidence 67999999999999 5999999999988888 8999998886665 332 111111112111 11222233
Q ss_pred CCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccch
Q 045222 588 QGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGI 667 (1049)
Q Consensus 588 qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1049)
+.+++.|++++|||++|
T Consensus 155 ~~~~~~G~~~~~rr~~~--------------------------------------------------------------- 171 (228)
T PF13641_consen 155 GVAFLSGSGMLFRRSAL--------------------------------------------------------------- 171 (228)
T ss_dssp --S-B--TEEEEEHHHH---------------------------------------------------------------
T ss_pred ceeeccCcEEEEEHHHH---------------------------------------------------------------
Confidence 33344455555555444
Q ss_pred hccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccccccccccccc
Q 045222 668 EEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVT 747 (1049)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvT 747 (1049)
+++||+++ ....
T Consensus 172 -----------------------------------~~~g~fd~---------------------------------~~~~ 183 (228)
T PF13641_consen 172 -----------------------------------EEVGGFDP---------------------------------FILG 183 (228)
T ss_dssp -----------------------------------HHH-S--S---------------------------------SSSS
T ss_pred -----------------------------------HHhCCCCC---------------------------------CCcc
Confidence 45676654 3777
Q ss_pred chHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheeccc
Q 045222 748 KDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALG 794 (1049)
Q Consensus 748 EDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G 794 (1049)
||.+++++++.+||+++|++.... +...|.|+.++++||.||++|
T Consensus 184 eD~~l~~r~~~~G~~~~~~~~~~v--~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 184 EDFDLCLRLRAAGWRIVYAPDALV--YHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp HHHHHHHHHHHTT--EEEEEEEEE--EE--SSSTHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHCCCcEEEECCcEE--EEeCCCCHHHHHHHHhccCcC
Confidence 999999999999999999965444 899999999999999999987
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.89 E-value=9.3e-22 Score=223.51 Aligned_cols=235 Identities=16% Similarity=0.175 Sum_probs=159.1
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKID 428 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~ 428 (1049)
...|+|+|+||+|| |++ .+.++|.|++++|||. ++|+|.||+++|.|.+.+.+
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~--------------------- 90 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR--------------------- 90 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH---------------------
Confidence 34899999999999 986 6789999999999997 89999999998744221110
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHH
Q 045222 429 YLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALV 508 (1049)
Q Consensus 429 ~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~l 508 (1049)
++++|. -.++.++...++.| .++|++|+|.++
T Consensus 91 ----------------~~~~~p------------------------------~~~i~~v~~~~~~G--~~~K~~~l~~~~ 122 (373)
T TIGR03472 91 ----------------LRADFP------------------------------DADIDLVIDARRHG--PNRKVSNLINML 122 (373)
T ss_pred ----------------HHHhCC------------------------------CCceEEEECCCCCC--CChHHHHHHHHH
Confidence 000010 02366775544333 467999999988
Q ss_pred HhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhh-hhHhhhccccccC
Q 045222 509 RVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKT-VFFDINMKGLDGI 587 (1049)
Q Consensus 509 rvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~-vFfdi~~~glDg~ 587 (1049)
+ .+++|+|+++|+|.+ +.|++|++++..|.|| +++.|+.+.+..+ ... +.++.. .+.. .
T Consensus 123 ~----~a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v~~V~~~~~~~~--~~~-~~~~l~~~~~~-------~- 182 (373)
T TIGR03472 123 P----HARHDILVIADSDIS-VGPDYLRQVVAPLADP----DVGLVTCLYRGRP--VPG-FWSRLGAMGIN-------H- 182 (373)
T ss_pred H----hccCCEEEEECCCCC-cChhHHHHHHHHhcCC----CcceEeccccCCC--CCC-HHHHHHHHHhh-------h-
Confidence 8 579999999999999 5899999999988888 7999998644221 111 111110 0000 0
Q ss_pred CCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccch
Q 045222 588 QGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGI 667 (1049)
Q Consensus 588 qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1049)
.++-+. ... ...+. .
T Consensus 183 --~~~~~~--~~~--~~~~~----------------------------------------------------~------- 197 (373)
T TIGR03472 183 --NFLPSV--MVA--RALGR----------------------------------------------------A------- 197 (373)
T ss_pred --hhhHHH--HHH--HhccC----------------------------------------------------C-------
Confidence 000000 000 00000 0
Q ss_pred hccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccccccccccccc
Q 045222 668 EEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVT 747 (1049)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvT 747 (1049)
..-.|++..|++++++++||++.. ..+++
T Consensus 198 --------------------~~~~G~~~a~RR~~l~~iGGf~~~-------------------------------~~~~~ 226 (373)
T TIGR03472 198 --------------------RFCFGATMALRRATLEAIGGLAAL-------------------------------AHHLA 226 (373)
T ss_pred --------------------ccccChhhheeHHHHHHcCChHHh-------------------------------cccch
Confidence 001366667777888889998641 14778
Q ss_pred chHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccch
Q 045222 748 KDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSV 796 (1049)
Q Consensus 748 EDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~l 796 (1049)
||++++.+++.+||++.|.+.... ....|+|++++++||.||++..-
T Consensus 227 ED~~l~~~i~~~G~~v~~~~~~v~--~~~~~~s~~~~~~q~~RW~r~~~ 273 (373)
T TIGR03472 227 DDYWLGELVRALGLRVVLAPVVVD--TDVHETSFATLLAHELRWSRTIR 273 (373)
T ss_pred HHHHHHHHHHHcCCeEEecchhhh--cCCCccCHHHHHHHHHHHHhhhh
Confidence 999999999999999999865443 67888999999999999975443
No 28
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.89 E-value=1.3e-21 Score=236.46 Aligned_cols=239 Identities=18% Similarity=0.278 Sum_probs=172.6
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHH-cCCCCCCCeEEEE---EcCCCChhhHHHhhhhHHHhhhCCCCchhhhh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSIL-AVDYPVDKVSCYV---SDDGAAMLTFEALSETSEFARKWPRAPEWYFA 424 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~l-alDYP~~kl~vyV---~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~ 424 (1049)
.+.|.|+|+||+|| |. .|+.+||.+++ ++|||. ++|+| .||+.+. +++
T Consensus 68 ~~~~~vsIlVPa~n---E~-~VI~~~v~~ll~~ldYp~--~~I~v~~~~nD~~T~---~~~------------------- 119 (703)
T PRK15489 68 RDEQPLAIMVPAWK---EY-DVIAKMIENMLATLDYRR--YVIFVGTYPNDAETI---TEV------------------- 119 (703)
T ss_pred cCCCceEEEEeCCC---cH-HHHHHHHHHHHhcCCCCC--eEEEEEecCCCccHH---HHH-------------------
Confidence 35789999999999 99 79999999986 899995 78899 5787442 111
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHH
Q 045222 425 QKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAM 504 (1049)
Q Consensus 425 ~k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGAL 504 (1049)
++++ .+.|++.-|..+. + ...+||.||
T Consensus 120 -------------------------~~~~-------------------------~~~p~~~~v~~~~-~--gp~gKa~AL 146 (703)
T PRK15489 120 -------------------------ERMR-------------------------RRYKRLVRVEVPH-D--GPTCKADCL 146 (703)
T ss_pred -------------------------HHHh-------------------------ccCCcEEEEEcCC-C--CCCCHHHHH
Confidence 1110 1236566655432 1 356899999
Q ss_pred HHHHHhc---cCCCCCCE--EEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCcc-ccCCCCc---cccchhhhh
Q 045222 505 NALVRVS---AVLTNSPY--LLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRR-FDGINQD---DRFANRKTV 575 (1049)
Q Consensus 505 N~~lrvS---av~tng~~--Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~-F~nid~~---D~yan~~~v 575 (1049)
|.++... .-.+.++| |+++|||.+ ++|++|+.. -++.+. . -+||.|-. ..|...+ ..|+.+...
T Consensus 147 N~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~~-~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~~~~~Efa~ 219 (703)
T PRK15489 147 NWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKYF-NYLLPR----K-DLVQLPVLSLERKWYEWVAGTYMDEFAE 219 (703)
T ss_pred HHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHHH-HhhcCC----c-ceeeeeeccCCCccccHHHHHHHHHHHH
Confidence 9988742 11124444 999999999 799999754 555543 1 36998821 2222111 337788888
Q ss_pred hHhhhccccccCCCcccc-cccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhh
Q 045222 576 FFDINMKGLDGIQGPINV-GTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFA 654 (1049)
Q Consensus 576 Ffdi~~~glDg~qgp~yv-GTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~ 654 (1049)
.|+..|+++..+.|++.+ |||++|||.||-.
T Consensus 220 ~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~------------------------------------------------ 251 (703)
T PRK15489 220 WHQKDLVVRESLTGTVPSAGVGTCFSRRALLA------------------------------------------------ 251 (703)
T ss_pred HhhhHHHHHHHcCCceeccCcceeeeHHHHHH------------------------------------------------
Confidence 899999999999998874 7999999998821
Q ss_pred cccCCccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccc
Q 045222 655 MKDTAPMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTE 734 (1049)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~ 734 (1049)
+.+.||..
T Consensus 252 -----------------------------------------------l~~~gg~~------------------------- 259 (703)
T PRK15489 252 -----------------------------------------------LMKERGNQ------------------------- 259 (703)
T ss_pred -----------------------------------------------HHHhcCCC-------------------------
Confidence 11234322
Q ss_pred cccccccccccccchHHHHHHHHHCCcEEEEecC---------------------CCCccccCCCcCHHHHHhhhheecc
Q 045222 735 WGKEVGWIYGSVTKDMLTGLIMHCHGWRSIYCIP---------------------DRPAFKGPAPINLSVCLHWVLRWAL 793 (1049)
Q Consensus 735 WG~evGW~ygsvTEDi~Tg~rLh~rGWrSvY~~~---------------------~~~Af~GlaP~tl~~~l~QR~RWA~ 793 (1049)
+|..+|+|||++.|+||+.+|||+.|+.- ...+.+...|.|+.+.++||.||-.
T Consensus 260 -----~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~~ 334 (703)
T PRK15489 260 -----PFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWVL 334 (703)
T ss_pred -----CCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHHh
Confidence 47789999999999999999999999422 1244577899999999999999999
Q ss_pred cch-hhhh
Q 045222 794 GSV-EVFL 800 (1049)
Q Consensus 794 G~l-QI~l 800 (1049)
|-. |-..
T Consensus 335 Gi~~q~~~ 342 (703)
T PRK15489 335 GIAFQGWE 342 (703)
T ss_pred HHHHhhHH
Confidence 988 7763
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.88 E-value=4.9e-23 Score=220.21 Aligned_cols=223 Identities=17% Similarity=0.118 Sum_probs=148.5
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCC--------CCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYP--------VDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKI 427 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP--------~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~ 427 (1049)
|+||+|| |++.++++||.|++++||| .++++|+|+|||+++.
T Consensus 1 v~ip~yN---E~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d~--------------------------- 50 (244)
T cd04190 1 VCVTMYN---EDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIKK--------------------------- 50 (244)
T ss_pred CEEeeec---CCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCcccc---------------------------
Confidence 6899999 9878999999999999999 7899999999999840
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChH-----H
Q 045222 428 DYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKA-----G 502 (1049)
Q Consensus 428 ~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KA-----G 502 (1049)
.+.| .+| .
T Consensus 51 ------------------------------------------------------------~~gk-------~~~~~~~~~ 63 (244)
T cd04190 51 ------------------------------------------------------------NRGK-------RDSQLWFFN 63 (244)
T ss_pred ------------------------------------------------------------cCcc-------hHHHHHHHH
Confidence 0000 011 1
Q ss_pred HHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEEecCccccCCCCccc--cch-hhhhhHh
Q 045222 503 AMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYVQFPRRFDGINQDDR--FAN-RKTVFFD 578 (1049)
Q Consensus 503 ALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~VQ~PQ~F~nid~~D~--yan-~~~vFfd 578 (1049)
++|.++. .++++||+++|+|.+ ++|++|++++..| .|| +++-||..+...|...+-. +.+ +...++-
T Consensus 64 ~~~~~~~----~a~~e~i~~~DaD~~-~~~~~l~~l~~~~~~~p----~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~ 134 (244)
T cd04190 64 YFCRVLF----PDDPEFILLVDADTK-FDPDSIVQLYKAMDKDP----EIGGVCGEIHPMGKKQGPLVMYQVFEYAISHW 134 (244)
T ss_pred HHHHHhh----cCCCCEEEEECCCCc-CCHhHHHHHHHHHHhCC----CEEEEEeeeEEcCCcchhHHHhHheehhhhhh
Confidence 3444444 578999999999999 5999999999877 688 7999999988776533311 111 0001011
Q ss_pred hhccccccCCC-cccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhccc
Q 045222 579 INMKGLDGIQG-PINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKD 657 (1049)
Q Consensus 579 i~~~glDg~qg-p~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~ 657 (1049)
....+...++. ....|++.+|||+||..... .|..+ +.+ +
T Consensus 135 ~~~~~~s~~g~~~~~~G~~~~~R~~~l~~~~~------------~~~~~----~~~-~---------------------- 175 (244)
T cd04190 135 LDKAFESVFGFVTCLPGCFSMYRIEALKGDNG------------GKGPL----LDY-A---------------------- 175 (244)
T ss_pred hcccHHHcCCceEECCCceEEEEehhhcCCcc------------ccccc----hhh-c----------------------
Confidence 11112222222 33457888899998864210 00000 000 0
Q ss_pred CCccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccc
Q 045222 658 TAPMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGK 737 (1049)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~ 737 (1049)
+.++++.+ |+
T Consensus 176 ---------------------------------------~~~~~~~~-~~------------------------------ 185 (244)
T cd04190 176 ---------------------------------------YLTNTVDS-LH------------------------------ 185 (244)
T ss_pred ---------------------------------------cccCcccc-hH------------------------------
Confidence 00001101 10
Q ss_pred ccccccccccchHHHHHHHHHCCcEEEE--ecCCCCccccCCCcCHHHHHhhhheecccchh
Q 045222 738 EVGWIYGSVTKDMLTGLIMHCHGWRSIY--CIPDRPAFKGPAPINLSVCLHWVLRWALGSVE 797 (1049)
Q Consensus 738 evGW~ygsvTEDi~Tg~rLh~rGWrSvY--~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQ 797 (1049)
+....+++||.+++++|..+||++.| +..... +..+|+|+.++++||+||++|++.
T Consensus 186 --~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~a~~--~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 186 --KKNNLDLGEDRILCTLLLKAGPKRKYLYVPGAVA--ETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred --HHHHHhHhcccceeHHHhccCCccEEEEecccEE--EEECCCCHHHHHHHhHhhhccccc
Confidence 11235899999999999999999999 654444 899999999999999999999864
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.87 E-value=1.8e-21 Score=200.74 Aligned_cols=226 Identities=16% Similarity=0.172 Sum_probs=155.0
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
|+||||| |+ ..+.+||.|+++++||.++++|+|+|||+++.|.+.+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----------------------------- 47 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----------------------------- 47 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-----------------------------
Confidence 6899999 87 68999999999999999899999999999875422111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCC
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLT 515 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~t 515 (1049)
+... ...|++.++.++. + ...+|+.|+|.++. .+
T Consensus 48 -------------~~~~--------------------------~~~~~v~~~~~~~-~--~~~g~~~a~n~g~~----~~ 81 (229)
T cd04192 48 -------------FAAA--------------------------KPNFQLKILNNSR-V--SISGKKNALTTAIK----AA 81 (229)
T ss_pred -------------HHHh--------------------------CCCcceEEeeccC-c--ccchhHHHHHHHHH----Hh
Confidence 0000 0124466665543 1 34689999999998 47
Q ss_pred CCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCc-cccchhhhhhHhhhccccccCCCc-ccc
Q 045222 516 NSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQD-DRFANRKTVFFDINMKGLDGIQGP-INV 593 (1049)
Q Consensus 516 ng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~-D~yan~~~vFfdi~~~glDg~qgp-~yv 593 (1049)
+++||+++|+|.+ +.|++|.+++..|.++ ..+.|+.++.+...+.. ..+......+......+..+.+.+ +..
T Consensus 82 ~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (229)
T cd04192 82 KGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCN 156 (229)
T ss_pred cCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccc
Confidence 8999999999999 5899999999977665 57788888887622111 111110000111111111111111 111
Q ss_pred cccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccchhccccc
Q 045222 594 GTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGIEEGIEG 673 (1049)
Q Consensus 594 GTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1049)
T Consensus 157 -------------------------------------------------------------------------------- 156 (229)
T cd04192 157 -------------------------------------------------------------------------------- 156 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHH
Q 045222 674 AEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLTG 753 (1049)
Q Consensus 674 ~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~Tg 753 (1049)
|.+..|++++++++||+++. ....+||.+..
T Consensus 157 ------------------g~~~~~rr~~~~~~ggf~~~-------------------------------~~~~~eD~~~~ 187 (229)
T cd04192 157 ------------------GANMAYRKEAFFEVGGFEGN-------------------------------DHIASGDDELL 187 (229)
T ss_pred ------------------cceEEEEHHHHHHhcCCccc-------------------------------cccccCCHHHH
Confidence 23334445566678888642 24678999999
Q ss_pred HHHHHCCc-EEEEecCCCCccccCCCcCHHHHHhhhheeccc
Q 045222 754 LIMHCHGW-RSIYCIPDRPAFKGPAPINLSVCLHWVLRWALG 794 (1049)
Q Consensus 754 ~rLh~rGW-rSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G 794 (1049)
++++.+|| ++.|+..+....+...|.++.++++||+||++|
T Consensus 188 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 188 LAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred HHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 99999999 999986555555899999999999999999988
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.86 E-value=3.5e-21 Score=198.00 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=145.7
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhh
Q 045222 352 MPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLK 431 (1049)
Q Consensus 352 P~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk 431 (1049)
|.|+|+||+|| |.. .+.++|.|+++++||. ++++|+|||+++.|.+.+.+
T Consensus 1 p~vsviip~~n---~~~-~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~------------------------ 50 (196)
T cd02520 1 PGVSILKPLCG---VDP-NLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRK------------------------ 50 (196)
T ss_pred CCeEEEEecCC---CCc-cHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHH------------------------
Confidence 67999999999 875 4789999999999997 89999999999854332211
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCC--cEEEEeccCCCCCCCCChHHHHHHHHH
Q 045222 432 DKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELP--RLVYVSREKRPGFNNHKKAGAMNALVR 509 (1049)
Q Consensus 432 ~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP--~lvYvsRekrpg~~h~~KAGALN~~lr 509 (1049)
+.+ ..| ++.++...++.| ..+|++|+|.+++
T Consensus 51 -----------------~~~----------------------------~~~~~~~~~~~~~~~~g--~~~~~~~~n~g~~ 83 (196)
T cd02520 51 -----------------LIA----------------------------KYPNVDARLLIGGEKVG--INPKVNNLIKGYE 83 (196)
T ss_pred -----------------HHH----------------------------HCCCCcEEEEecCCcCC--CCHhHHHHHHHHH
Confidence 000 011 134554443222 3468999999999
Q ss_pred hccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhhhhHhhhccccccCCC
Q 045222 510 VSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDINMKGLDGIQG 589 (1049)
Q Consensus 510 vSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~qg 589 (1049)
.++++|++++|+|.. ..|++|.+++..+.+| +++.|+..
T Consensus 84 ----~a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~-------------------------------- 122 (196)
T cd02520 84 ----EARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLVTCL-------------------------------- 122 (196)
T ss_pred ----hCCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeEEee--------------------------------
Confidence 578999999999998 5899999999888887 57778765
Q ss_pred cccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccchhc
Q 045222 590 PINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGIEE 669 (1049)
Q Consensus 590 p~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1049)
...|+++++||+++
T Consensus 123 -~~~g~~~~~r~~~~----------------------------------------------------------------- 136 (196)
T cd02520 123 -CAFGKSMALRREVL----------------------------------------------------------------- 136 (196)
T ss_pred -cccCceeeeEHHHH-----------------------------------------------------------------
Confidence 34567777777665
Q ss_pred cccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccch
Q 045222 670 GIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKD 749 (1049)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTED 749 (1049)
+++||++.. ...+.||
T Consensus 137 ---------------------------------~~~ggf~~~-------------------------------~~~~~eD 152 (196)
T cd02520 137 ---------------------------------DAIGGFEAF-------------------------------ADYLAED 152 (196)
T ss_pred ---------------------------------HhccChHHH-------------------------------hHHHHHH
Confidence 234555320 1246799
Q ss_pred HHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecc
Q 045222 750 MLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWAL 793 (1049)
Q Consensus 750 i~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~ 793 (1049)
++.++++..+||++.|+..... +...|.++.++++||.||++
T Consensus 153 ~~l~~rl~~~G~~i~~~~~~~~--~~~~~~~~~~~~~q~~rw~~ 194 (196)
T cd02520 153 YFLGKLIWRLGYRVVLSPYVVM--QPLGSTSLASFWRRQLRWSR 194 (196)
T ss_pred HHHHHHHHHcCCeEEEcchhee--ccCCcccHHHHHHHHHHHhc
Confidence 9999999999999999965444 78999999999999999986
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.83 E-value=7.9e-20 Score=190.66 Aligned_cols=120 Identities=23% Similarity=0.220 Sum_probs=94.2
Q ss_pred ceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhh
Q 045222 353 PVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKD 432 (1049)
Q Consensus 353 ~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~ 432 (1049)
+|+|+||||| |++..+.+||.|+++++ | .+|+|+|||+++-|.+.|.
T Consensus 1 ~isVvIp~~n---e~~~~l~~~l~sl~~q~-~---~eiivvdd~s~d~~~~~l~-------------------------- 47 (235)
T cd06434 1 DVTVIIPVYD---EDPDVFRECLRSILRQK-P---LEIIVVTDGDDEPYLSILS-------------------------- 47 (235)
T ss_pred CeEEEEeecC---CChHHHHHHHHHHHhCC-C---CEEEEEeCCCChHHHHHHH--------------------------
Confidence 4899999999 98789999999999999 4 5799999999873322110
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhcc
Q 045222 433 KVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSA 512 (1049)
Q Consensus 433 ~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSa 512 (1049)
+.+ ..|.+.++. + ++.+|++|+|.+++
T Consensus 48 ------------------~~~--------------------------~~~~~~v~~-~-----~~~g~~~a~n~g~~--- 74 (235)
T cd06434 48 ------------------QTV--------------------------KYGGIFVIT-V-----PHPGKRRALAEGIR--- 74 (235)
T ss_pred ------------------hhc--------------------------cCCcEEEEe-c-----CCCChHHHHHHHHH---
Confidence 000 012244443 3 24679999999998
Q ss_pred CCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCC
Q 045222 513 VLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGIN 564 (1049)
Q Consensus 513 v~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid 564 (1049)
.+++++|+++|+|.+ +.|++|++++..|.|| +++.|+..+.+.+.+
T Consensus 75 -~a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~ 120 (235)
T cd06434 75 -HVTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPR 120 (235)
T ss_pred -HhCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCc
Confidence 468999999999999 6899999999988887 799999999887764
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.83 E-value=2.7e-19 Score=189.09 Aligned_cols=127 Identities=26% Similarity=0.328 Sum_probs=99.6
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhh
Q 045222 348 PSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKI 427 (1049)
Q Consensus 348 ~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~ 427 (1049)
.+..|.|+|+||+|| |+ ..+.++|.|+++++||.++++|+|+|||+++.|.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~------------------------ 76 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAE------------------------ 76 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHH------------------------
Confidence 456899999999999 77 67899999999999999889999999999974421
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHH
Q 045222 428 DYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNAL 507 (1049)
Q Consensus 428 ~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~ 507 (1049)
+.+++.+ . ++.++..++ ..+|++|+|.+
T Consensus 77 -----------------~~~~~~~----------------------------~--~v~~i~~~~-----~~g~~~a~n~g 104 (251)
T cd06439 77 -----------------IAREYAD----------------------------K--GVKLLRFPE-----RRGKAAALNRA 104 (251)
T ss_pred -----------------HHHHHhh----------------------------C--cEEEEEcCC-----CCChHHHHHHH
Confidence 1111111 0 145555443 35799999999
Q ss_pred HHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCC
Q 045222 508 VRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGI 563 (1049)
Q Consensus 508 lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~ni 563 (1049)
++ .+++++|+++|+|.+ +.|++|++++..+.++ +++.|+......+.
T Consensus 105 i~----~a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 151 (251)
T cd06439 105 LA----LATGEIVVFTDANAL-LDPDALRLLVRHFADP----SVGAVSGELVIVDG 151 (251)
T ss_pred HH----HcCCCEEEEEccccC-cCHHHHHHHHHHhcCC----CccEEEeEEEecCC
Confidence 99 467899999999999 4799999999988876 68888887766543
No 34
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.81 E-value=1.5e-18 Score=198.12 Aligned_cols=133 Identities=23% Similarity=0.187 Sum_probs=95.6
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhh
Q 045222 348 PSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKI 427 (1049)
Q Consensus 348 ~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~ 427 (1049)
++..|+|+|+||+|| |+ ..+.+++.|+++++||. +++|+|+|||++|.|.+.+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 457899999999999 88 57899999999999995 489999999999855321111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHH
Q 045222 428 DYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNAL 507 (1049)
Q Consensus 428 ~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~ 507 (1049)
+.+ + . ..-+++.++..+.+|. ...+|+.|+|.+
T Consensus 91 ---------------------~~~-------------~----~--------~~~~~i~vi~~~~~~~-g~~Gk~~A~n~g 123 (384)
T TIGR03469 91 ---------------------AAR-------------A----Y--------GRGDRLTVVSGQPLPP-GWSGKLWAVSQG 123 (384)
T ss_pred ---------------------HHH-------------h----c--------CCCCcEEEecCCCCCC-CCcchHHHHHHH
Confidence 100 0 0 0012466665444332 356899999999
Q ss_pred HHhccCC-CCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecC
Q 045222 508 VRVSAVL-TNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFP 557 (1049)
Q Consensus 508 lrvSav~-tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~P 557 (1049)
++.+... ..+|+|+++|+|.. ++|++|++++..+.++ ++++|..+
T Consensus 124 ~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~----~~~~vs~~ 169 (384)
T TIGR03469 124 IAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE----GLDLVSLM 169 (384)
T ss_pred HHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----CCCEEEec
Confidence 9853211 12899999999999 6899999999988775 35555543
No 35
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.75 E-value=3.6e-17 Score=170.85 Aligned_cols=232 Identities=15% Similarity=0.142 Sum_probs=152.6
Q ss_pred ceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhh
Q 045222 353 PVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKD 432 (1049)
Q Consensus 353 ~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~ 432 (1049)
.|+|+||||| |+ ..+.+++.++++++||..+++|+|+|||+++-|.+-
T Consensus 1 ~~sIiip~~n---~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~---------------------------- 48 (249)
T cd02525 1 FVSIIIPVRN---EE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREI---------------------------- 48 (249)
T ss_pred CEEEEEEcCC---ch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHH----------------------------
Confidence 3899999999 77 468999999999999977889999999998733110
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhcc
Q 045222 433 KVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSA 512 (1049)
Q Consensus 433 ~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSa 512 (1049)
.+++. ...|.+.++..+ .+++++|+|.+++
T Consensus 49 ----------------~~~~~-------------------------~~~~~v~~i~~~------~~~~~~a~N~g~~--- 78 (249)
T cd02525 49 ----------------VQEYA-------------------------AKDPRIRLIDNP------KRIQSAGLNIGIR--- 78 (249)
T ss_pred ----------------HHHHH-------------------------hcCCeEEEEeCC------CCCchHHHHHHHH---
Confidence 01110 012456777543 2468999999999
Q ss_pred CCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhhhhHhhhccccccCCCccc
Q 045222 513 VLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDINMKGLDGIQGPIN 592 (1049)
Q Consensus 513 v~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~qgp~y 592 (1049)
.+++++|+++|+|.+ +.|++|.+++.++.++ ++..|+.+....+.+. +.. .+.. .. ..+
T Consensus 79 -~a~~d~v~~lD~D~~-~~~~~l~~~~~~~~~~----~~~~v~~~~~~~~~~~---~~~---~~~~-~~------~~~-- 137 (249)
T cd02525 79 -NSRGDIIIRVDAHAV-YPKDYILELVEALKRT----GADNVGGPMETIGESK---FQK---AIAV-AQ------SSP-- 137 (249)
T ss_pred -HhCCCEEEEECCCcc-CCHHHHHHHHHHHhcC----CCCEEecceecCCCCh---HHH---HHHH-Hh------hch--
Confidence 468999999999999 6999999999888776 4555555433222111 100 0000 00 000
Q ss_pred ccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccchhcccc
Q 045222 593 VGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGIEEGIE 672 (1049)
Q Consensus 593 vGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1049)
.+.+....+.... .. .++
T Consensus 138 ~~~~~~~~~~~~~-----------~~------~~~--------------------------------------------- 155 (249)
T cd02525 138 LGSGGSAYRGGAV-----------KI------GYV--------------------------------------------- 155 (249)
T ss_pred hccCCcccccccc-----------cc------ccc---------------------------------------------
Confidence 0000000000000 00 000
Q ss_pred ccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHH
Q 045222 673 GAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLT 752 (1049)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~T 752 (1049)
-.|....|.++++.+.||+++. ....||.+.
T Consensus 156 -----------------~~~~~~~~~~~~~~~~g~~~~~--------------------------------~~~~eD~~l 186 (249)
T cd02525 156 -----------------DTVHHGAYRREVFEKVGGFDES--------------------------------LVRNEDAEL 186 (249)
T ss_pred -----------------cccccceEEHHHHHHhCCCCcc--------------------------------cCccchhHH
Confidence 0133334555667778887752 134699999
Q ss_pred HHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhh
Q 045222 753 GLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFL 800 (1049)
Q Consensus 753 g~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~l 800 (1049)
+++++.+|+++.|+..... .-..|.+++++++|+.||+.|..|.+.
T Consensus 187 ~~r~~~~G~~~~~~~~~~~--~~~~~~s~~~~~~~~~r~~~~~~~~~~ 232 (249)
T cd02525 187 NYRLRKAGYKIWLSPDIRV--YYYPRSTLKKLARQYFRYGKWRARTLR 232 (249)
T ss_pred HHHHHHcCcEEEEcCCeEE--EEcCCCCHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999965555 567789999999999999999999986
No 36
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=3.6e-14 Score=162.50 Aligned_cols=285 Identities=21% Similarity=0.313 Sum_probs=183.3
Q ss_pred CCCceEEEEecCCCCCCchHHHHH----HHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhh
Q 045222 350 KLMPVDIFVSTVDPIKEPSLVTAN----TVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQ 425 (1049)
Q Consensus 350 ~lP~VDVfV~t~nP~kEpp~vv~~----Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~ 425 (1049)
++-+-.|++|+|| |.|.-|-. |..|+.+-. -.+.+.++|+.|..++. -+++|..
T Consensus 142 ~~hrTAilmPiyn---Ed~~rVfAgLrA~~eSla~Tg-~~~~FD~FVLSDs~dpd--ialAEq~---------------- 199 (736)
T COG2943 142 DLHRTAILMPIYN---EDVNRVFAGLRATYESLAATG-HAEHFDFFVLSDSRDPD--IALAEQK---------------- 199 (736)
T ss_pred cccceeEEeeccc---cCHHHHHHHHHHHHHHHHhhC-CcccceEEEEcCCCCch--hhhhHHH----------------
Confidence 3446889999999 99876543 444444333 34678999999988741 1222222
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHH
Q 045222 426 KIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMN 505 (1049)
Q Consensus 426 k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN 505 (1049)
.|.++..+. +..| ++.|-.|.+ |-..||||+.
T Consensus 200 ----------------------a~~~l~~e~------------~g~~----------~ifYRrRr~----n~~RKaGNIa 231 (736)
T COG2943 200 ----------------------AWAELCREL------------GGEG----------NIFYRRRRR----NVKRKAGNIA 231 (736)
T ss_pred ----------------------HHHHHHHHh------------CCCC----------ceeeehHhh----hhcccccCHH
Confidence 233332211 1111 245544444 6788999999
Q ss_pred HHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEEecCccccCCCCccccchh----hhhhHhhh
Q 045222 506 ALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYVQFPRRFDGINQDDRFANR----KTVFFDIN 580 (1049)
Q Consensus 506 ~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~----~~vFfdi~ 580 (1049)
...|-=| +.+++++++|||.+. ..+.+-+++..| .+| +.|.+|+--.--|.|- .|+-- .+|+=-+.
T Consensus 232 DfcrRwG--~~Y~~MlVLDADSvM-tgd~lvrLv~~ME~~P----~aGlIQt~P~~~gg~T--L~AR~qQFatrvYGpl~ 302 (736)
T COG2943 232 DFCRRWG--SAYSYMLVLDADSVM-TGDCLVRLVRLMEANP----DAGLIQTSPKASGGDT--LYARCQQFATRVYGPLF 302 (736)
T ss_pred HHHHHhC--cccceEEEeeccccc-CchHHHHHHHHHhhCC----CCceeecchhhcCcch--HHHHHHHHHHHHhchHH
Confidence 9998654 678999999999995 889999999988 477 8999999655444331 22211 11222223
Q ss_pred ccccccCCC--cccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccC
Q 045222 581 MKGLDGIQG--PINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDT 658 (1049)
Q Consensus 581 ~~glDg~qg--p~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~ 658 (1049)
--|+.-||+ .-|-|.|++.|-+|+.
T Consensus 303 ~~GLawW~~~Es~yWGHNAIIRt~aF~----------------------------------------------------- 329 (736)
T COG2943 303 TAGLAWWQLGESHYWGHNAIIRTKAFI----------------------------------------------------- 329 (736)
T ss_pred hhhhHHHhccccccccccceeechhhH-----------------------------------------------------
Confidence 334444444 2445555555555542
Q ss_pred CccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccc
Q 045222 659 APMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKE 738 (1049)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~e 738 (1049)
|.-|.|+-. -+-.
T Consensus 330 ---------------------------------------------~hcgLp~Lp------------------G~~p---- 342 (736)
T COG2943 330 ---------------------------------------------EHCGLPPLP------------------GRGP---- 342 (736)
T ss_pred ---------------------------------------------HhcCCCCCC------------------CCCC----
Confidence 222222100 0000
Q ss_pred cccccccccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhh
Q 045222 739 VGWIYGSVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLE 818 (1049)
Q Consensus 739 vGW~ygsvTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~Q 818 (1049)
|.-.-++.|+..+-.|.+.|| ++++.+.+..-|.+.|.|+.|.++.-+|||+|++|-+. ++. .++|.+..
T Consensus 343 --FgG~ilSHDfvEAALmRRaGW-~v~ia~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~r-----l~~--~~GlHwvs 412 (736)
T COG2943 343 --FGGHILSHDFVEAALMRRAGW-GVWIAYDLDGSYEELPPNLLDELKRDRRWCHGNLQHFR-----LFL--VKGLHWVS 412 (736)
T ss_pred --CCccccchHHHHHHHHhhcCc-eEEEeccCCCchhhCCchHHHHHhhhhHhhhcchhhce-----eec--cCCccHHH
Confidence 111256789999999999999 56666778777899999999999999999999999873 331 58999999
Q ss_pred hHhHHhhhhhhhhHHHHHHHHHHHH
Q 045222 819 RLSYINACLYPFTSIPLLVYCALPA 843 (1049)
Q Consensus 819 RL~Yl~s~ly~l~sl~~liylllP~ 843 (1049)
|+.++.+++.|+++-...+++++-.
T Consensus 413 R~h~~tGVmsYlsaPlWfl~ll~g~ 437 (736)
T COG2943 413 RAHFLTGVMSYLSAPLWFLFLLLGT 437 (736)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999888877654444444333
No 37
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.66 E-value=6.3e-16 Score=159.15 Aligned_cols=165 Identities=19% Similarity=0.143 Sum_probs=118.9
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
|+||+|| |+ .++.++|.|+++++ | +++|+|+|||+++.|.+.+.
T Consensus 1 ViIp~~N---e~-~~l~~~l~sl~~~~-~--~~eIivvdd~S~D~t~~~~~----------------------------- 44 (191)
T cd06436 1 VLVPCLN---EE-AVIQRTLASLLRNK-P--NFLVLVIDDASDDDTAGIVR----------------------------- 44 (191)
T ss_pred CEEeccc---cH-HHHHHHHHHHHhCC-C--CeEEEEEECCCCcCHHHHHh-----------------------------
Confidence 6899999 88 68999999999999 5 47999999999985522110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhcc---
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSA--- 512 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSa--- 512 (1049)
+.. .-|++.++.++. ++ .+.+|++|+|.+++.+.
T Consensus 45 -------------~~~----------------------------~~~~v~~i~~~~-~~-~~~Gk~~aln~g~~~~~~~~ 81 (191)
T cd06436 45 -------------LAI----------------------------TDSRVHLLRRHL-PN-ARTGKGDALNAAYDQIRQIL 81 (191)
T ss_pred -------------hee----------------------------cCCcEEEEeccC-Cc-CCCCHHHHHHHHHHHHhhhc
Confidence 000 013477776642 11 24579999999998531
Q ss_pred ----CCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCcc--c-cchhhhhhHhhhccccc
Q 045222 513 ----VLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDD--R-FANRKTVFFDINMKGLD 585 (1049)
Q Consensus 513 ----v~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D--~-yan~~~vFfdi~~~glD 585 (1049)
.-..+++|+++|+|.. ++|++|++++.+|.|| +++.||.+.++.|.+.+- + +..+...++.+++.++.
T Consensus 82 ~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 156 (191)
T cd06436 82 IEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQSLRA 156 (191)
T ss_pred cccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0113589999999999 6899999988999988 799999999998865441 1 12233334455566665
Q ss_pred cCCCcccccccchhhhhhh
Q 045222 586 GIQGPINVGTGCVFRRQAF 604 (1049)
Q Consensus 586 g~qgp~yvGTgcvfRR~AL 604 (1049)
......+.|+|++|||+||
T Consensus 157 ~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 157 LTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred hcCcEEECCeeEEEeHHHH
Confidence 5555557889999999887
No 38
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.65 E-value=1.2e-15 Score=155.89 Aligned_cols=138 Identities=26% Similarity=0.351 Sum_probs=102.4
Q ss_pred EEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhhhhHhhhc----cccccCCC-cccc
Q 045222 519 YLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDINM----KGLDGIQG-PINV 593 (1049)
Q Consensus 519 ~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~----~glDg~qg-p~yv 593 (1049)
+|+++|+|+. +.+++|++++.+|.|| +++.||+|+.+++ .++...+.+..+|+... +..+..+. ....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 5899999999 6899999999999888 8999999999873 34445555555553221 11111222 2234
Q ss_pred cccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccchhccccc
Q 045222 594 GTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGIEEGIEG 673 (1049)
Q Consensus 594 GTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1049)
|+|.++||+||
T Consensus 74 G~~~~~r~~~l--------------------------------------------------------------------- 84 (193)
T PF13632_consen 74 GSGMLFRREAL--------------------------------------------------------------------- 84 (193)
T ss_pred CcceeeeHHHH---------------------------------------------------------------------
Confidence 55555555444
Q ss_pred cccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHH
Q 045222 674 AEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLTG 753 (1049)
Q Consensus 674 ~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~Tg 753 (1049)
+++||++ . ..+++||.+++
T Consensus 85 -----------------------------~~vg~~~-~-------------------------------~~~~~ED~~l~ 103 (193)
T PF13632_consen 85 -----------------------------REVGGFD-D-------------------------------PFSIGEDMDLG 103 (193)
T ss_pred -----------------------------HHhCccc-c-------------------------------cccccchHHHH
Confidence 4566554 0 36899999999
Q ss_pred HHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccc
Q 045222 754 LIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGS 795 (1049)
Q Consensus 754 ~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~ 795 (1049)
+++..+||+..|++.... +..+|.|+.++++||+||+.|.
T Consensus 104 ~~l~~~G~~~~~~~~~~~--~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 104 FRLRRAGYRIVYVPDAIV--YTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred HHHHHCCCEEEEecccce--eeeCCCCHHHHHHHHHHHHhhh
Confidence 999999999999976544 8999999999999999999998
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.58 E-value=1e-14 Score=148.36 Aligned_cols=162 Identities=22% Similarity=0.192 Sum_probs=104.3
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
|+||+|| |+ ..+.+||.++++++||.++++|+|+|||+++.|.+ .++
T Consensus 1 VvIp~~n---e~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~-------~~~---------------------- 47 (183)
T cd06438 1 ILIPAHN---EE-AVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQ-------VAR---------------------- 47 (183)
T ss_pred CEEeccc---hH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHH-------HHH----------------------
Confidence 6899999 88 68899999999999998889999999999874421 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhcc-CC
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSA-VL 514 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSa-v~ 514 (1049)
++ + ..++.|.+ ..+.+|++|+|.+++... .-
T Consensus 48 ---------------~~----------------~--------------~~~~~~~~---~~~~gk~~aln~g~~~a~~~~ 79 (183)
T cd06438 48 ---------------AA----------------G--------------ATVLERHD---PERRGKGYALDFGFRHLLNLA 79 (183)
T ss_pred ---------------Hc----------------C--------------CeEEEeCC---CCCCCHHHHHHHHHHHHHhcC
Confidence 00 0 01122221 135679999999998531 12
Q ss_pred CCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccc---cchhhhhhHhhhccccccCCCc-
Q 045222 515 TNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDR---FANRKTVFFDINMKGLDGIQGP- 590 (1049)
Q Consensus 515 tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~---yan~~~vFfdi~~~glDg~qgp- 590 (1049)
+++++|+++|+|.+ +.|++|++++..|.+. ...||......+.+.+-. ++-....++.+...++..+.+.
T Consensus 80 ~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (183)
T cd06438 80 DDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPDDSWITRLYAFAFLVFNRLRPLGRSNLGLSC 153 (183)
T ss_pred CCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccCHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 47999999999999 5899999999888653 346887776665433211 1111222222233333334333
Q ss_pred ccccccchhhhhhh
Q 045222 591 INVGTGCVFRRQAF 604 (1049)
Q Consensus 591 ~yvGTgcvfRR~AL 604 (1049)
...|+|.+|||++|
T Consensus 154 ~~~G~~~~~rr~~l 167 (183)
T cd06438 154 QLGGTGMCFPWAVL 167 (183)
T ss_pred eecCchhhhHHHHH
Confidence 33566666666555
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.56 E-value=8.6e-14 Score=141.81 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=91.3
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhh
Q 045222 352 MPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLK 431 (1049)
Q Consensus 352 P~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk 431 (1049)
|.|+|+||+|| |....+.+||.|++++.||. ++|+|+|||+++.|.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~-------------------------- 49 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRV-------------------------- 49 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHH--------------------------
Confidence 67999999999 77567899999999999986 789999999986321111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhc
Q 045222 432 DKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVS 511 (1049)
Q Consensus 432 ~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvS 511 (1049)
.+.|.+ ..+++.++..+. ..+++.|+|.+++
T Consensus 50 --------------~~~~~~----------------------------~~~~~~~~~~~~-----~~g~~~a~n~g~~-- 80 (202)
T cd04184 50 --------------LKKYAA----------------------------QDPRIKVVFREE-----NGGISAATNSALE-- 80 (202)
T ss_pred --------------HHHHHh----------------------------cCCCEEEEEccc-----CCCHHHHHHHHHH--
Confidence 111111 113456655443 4578999999999
Q ss_pred cCCCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEEecCccc
Q 045222 512 AVLTNSPYLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYVQFPRRF 560 (1049)
Q Consensus 512 av~tng~~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~VQ~PQ~F 560 (1049)
.+.++||+++|+|.+ +.|++|.+++..+ .+| +++.|+.....
T Consensus 81 --~a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~ 123 (202)
T cd04184 81 --LATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADLIYSDEDK 123 (202)
T ss_pred --hhcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCEEEccHHh
Confidence 468999999999999 6999999999877 677 57777655443
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.50 E-value=6.2e-13 Score=135.68 Aligned_cols=121 Identities=20% Similarity=0.238 Sum_probs=89.5
Q ss_pred EEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhh
Q 045222 355 DIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKV 434 (1049)
Q Consensus 355 DVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~ 434 (1049)
+|+||||| .|.+..+.+||.|+++++||. .+++|+|||+++.+ +.
T Consensus 1 sviip~~n--~~~~~~l~~~l~Sl~~q~~~~--~eiiivdd~ss~d~------t~------------------------- 45 (201)
T cd04195 1 SVLMSVYI--KEKPEFLREALESILKQTLPP--DEVVLVKDGPVTQS------LN------------------------- 45 (201)
T ss_pred CEEEEccc--cchHHHHHHHHHHHHhcCCCC--cEEEEEECCCCchh------HH-------------------------
Confidence 48999999 345678999999999999995 57899999985311 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCC
Q 045222 435 LASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVL 514 (1049)
Q Consensus 435 ~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~ 514 (1049)
.+.++|.+ ..| +.++..++ ..++++|+|.+++ .
T Consensus 46 ---------~~~~~~~~----------------------------~~~-i~~i~~~~-----n~G~~~a~N~g~~----~ 78 (201)
T cd04195 46 ---------EVLEEFKR----------------------------KLP-LKVVPLEK-----NRGLGKALNEGLK----H 78 (201)
T ss_pred ---------HHHHHHHh----------------------------cCC-eEEEEcCc-----cccHHHHHHHHHH----h
Confidence 11111111 113 67777654 3579999999999 5
Q ss_pred CCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCceeEEEecCccccC
Q 045222 515 TNSPYLLNLDCDHYINNSKALREAMCFMM-DPLLGKRVCYVQFPRRFDG 562 (1049)
Q Consensus 515 tng~~Il~lDaD~~~~~p~~Lr~~m~ff~-Dp~~g~~v~~VQ~PQ~F~n 562 (1049)
++|+||+++|+|.+ ..|++|.+++.+|. +| +++.|.......+
T Consensus 79 a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 79 CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 78999999999999 68999999999874 55 6788877665443
No 42
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.38 E-value=7.1e-12 Score=125.92 Aligned_cols=116 Identities=23% Similarity=0.270 Sum_probs=84.7
Q ss_pred EEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhh
Q 045222 355 DIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKV 434 (1049)
Q Consensus 355 DVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~ 434 (1049)
+|+||||| ++ ..+.+++.|++++.||. ++|+|+|||+++.|.+.+
T Consensus 1 sivi~~~n---~~-~~l~~~l~sl~~q~~~~--~evivvDd~s~d~~~~~~----------------------------- 45 (202)
T cd06433 1 SIITPTYN---QA-ETLEETIDSVLSQTYPN--IEYIVIDGGSTDGTVDII----------------------------- 45 (202)
T ss_pred CEEEeccc---hH-HHHHHHHHHHHhCCCCC--ceEEEEeCCCCccHHHHH-----------------------------
Confidence 48999999 77 68899999999999986 799999999987432111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCC
Q 045222 435 LASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVL 514 (1049)
Q Consensus 435 ~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~ 514 (1049)
+.+.+ .++++..++ ..++++|+|.+++ .
T Consensus 46 ------------~~~~~-------------------------------~~~~~~~~~-----~~g~~~a~n~~~~----~ 73 (202)
T cd06433 46 ------------KKYED-------------------------------KITYWISEP-----DKGIYDAMNKGIA----L 73 (202)
T ss_pred ------------HHhHh-------------------------------hcEEEEecC-----CcCHHHHHHHHHH----H
Confidence 01110 013333333 3479999999999 5
Q ss_pred CCCCEEEEecCCCCCChHHHHHHHH-HhhcCCCCCceeEEEecCccccC
Q 045222 515 TNSPYLLNLDCDHYINNSKALREAM-CFMMDPLLGKRVCYVQFPRRFDG 562 (1049)
Q Consensus 515 tng~~Il~lDaD~~~~~p~~Lr~~m-~ff~Dp~~g~~v~~VQ~PQ~F~n 562 (1049)
++++||+++|+|.. ..++.+.+++ .+..++ ++..|.....+.+
T Consensus 74 a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~~ 117 (202)
T cd06433 74 ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLVD 117 (202)
T ss_pred cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEEc
Confidence 78999999999999 5789999998 445666 5666766655443
No 43
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.36 E-value=9.5e-12 Score=127.22 Aligned_cols=119 Identities=20% Similarity=0.213 Sum_probs=89.7
Q ss_pred EEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhh
Q 045222 355 DIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKV 434 (1049)
Q Consensus 355 DVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~ 434 (1049)
+|+||||| |+ ..+.++|.|+++++|| +++|+|+|||+++-|.+.+.+
T Consensus 1 sIvIp~yn---~~-~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~--------------------------- 47 (214)
T cd04196 1 AVLMATYN---GE-KYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKE--------------------------- 47 (214)
T ss_pred CEEEEecC---cH-HHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHH---------------------------
Confidence 48999999 77 6789999999999999 589999999999855332211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCC-CcEEEEeccCCCCCCCCChHHHHHHHHHhccC
Q 045222 435 LASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNEL-PRLVYVSREKRPGFNNHKKAGAMNALVRVSAV 513 (1049)
Q Consensus 435 ~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~l-P~lvYvsRekrpg~~h~~KAGALN~~lrvSav 513 (1049)
+.+ +. +.+.++..++ .+++++|+|.++.
T Consensus 48 --------------~~~----------------------------~~~~~~~~~~~~~-----~~G~~~~~n~g~~---- 76 (214)
T cd04196 48 --------------YID----------------------------KDPFIIILIRNGK-----NLGVARNFESLLQ---- 76 (214)
T ss_pred --------------HHh----------------------------cCCceEEEEeCCC-----CccHHHHHHHHHH----
Confidence 110 01 1245554443 4679999999998
Q ss_pred CCCCCEEEEecCCCCCChHHHHHHHHHh-hcCCCCCceeEEEecCccccC
Q 045222 514 LTNSPYLLNLDCDHYINNSKALREAMCF-MMDPLLGKRVCYVQFPRRFDG 562 (1049)
Q Consensus 514 ~tng~~Il~lDaD~~~~~p~~Lr~~m~f-f~Dp~~g~~v~~VQ~PQ~F~n 562 (1049)
.++++||+++|+|.+ ..|+.|.+++-. +.++ +.+++.....+.+
T Consensus 77 ~~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 121 (214)
T cd04196 77 AADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELVD 121 (214)
T ss_pred hCCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEEC
Confidence 578999999999999 589999999987 5565 6777877765543
No 44
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.35 E-value=1.2e-11 Score=136.05 Aligned_cols=110 Identities=20% Similarity=0.139 Sum_probs=85.3
Q ss_pred EEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhh
Q 045222 355 DIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKV 434 (1049)
Q Consensus 355 DVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~ 434 (1049)
+|+||+|| |++..+.+||.|+++..||....+|+|+|||+++.|.+.+.+
T Consensus 1 SIIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~--------------------------- 50 (299)
T cd02510 1 SVIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE--------------------------- 50 (299)
T ss_pred CEEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH---------------------------
Confidence 48999999 887799999999999999876679999999999854221110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCC
Q 045222 435 LASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVL 514 (1049)
Q Consensus 435 ~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~ 514 (1049)
.+.. ...|++.++..++ ..+++.|.|.+++ .
T Consensus 51 -------------~~~~---------------------------~~~~~v~vi~~~~-----n~G~~~a~N~g~~----~ 81 (299)
T cd02510 51 -------------EYYK---------------------------KYLPKVKVLRLKK-----REGLIRARIAGAR----A 81 (299)
T ss_pred -------------HHHh---------------------------hcCCcEEEEEcCC-----CCCHHHHHHHHHH----H
Confidence 0000 1235577776553 4579999999999 5
Q ss_pred CCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 045222 515 TNSPYLLNLDCDHYINNSKALREAMCFMMD 544 (1049)
Q Consensus 515 tng~~Il~lDaD~~~~~p~~Lr~~m~ff~D 544 (1049)
+.|+||+++|+|.. +.|++|.+++-.+..
T Consensus 82 A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~ 110 (299)
T cd02510 82 ATGDVLVFLDSHCE-VNVGWLEPLLARIAE 110 (299)
T ss_pred ccCCEEEEEeCCcc-cCccHHHHHHHHHHh
Confidence 78999999999999 589999999987754
No 45
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.30 E-value=5e-11 Score=124.37 Aligned_cols=111 Identities=15% Similarity=0.175 Sum_probs=80.4
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
|+||+|| ++ ..+.++|.|+++++||. .++|+|+|||+++.|.+.+
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~~-~~eiiVvDd~S~d~t~~i~------------------------------ 45 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFEG-TLELSVFNDASTDKSAEII------------------------------ 45 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCCC-CEEEEEEeCCCCccHHHHH------------------------------
Confidence 6899999 66 58999999999999994 5899999999998553211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCC
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLT 515 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~t 515 (1049)
++|.+ + + ..+++.++..+.+.+ ...+.+.|.|.+++ .+
T Consensus 46 -----------~~~~~---~------------~-----------~~~~~~~~~~~~~~~-~~~G~~~a~N~g~~----~a 83 (219)
T cd06913 46 -----------EKWRK---K------------L-----------EDSGVIVLVGSHNSP-SPKGVGYAKNQAIA----QS 83 (219)
T ss_pred -----------HHHHH---h------------C-----------cccCeEEEEecccCC-CCccHHHHHHHHHH----hc
Confidence 11111 0 0 012356665443211 34678999999998 57
Q ss_pred CCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 045222 516 NSPYLLNLDCDHYINNSKALREAMCFMMD 544 (1049)
Q Consensus 516 ng~~Il~lDaD~~~~~p~~Lr~~m~ff~D 544 (1049)
+|+||+.+|+|.+ ..|+.|.+.+..+.+
T Consensus 84 ~gd~i~~lD~D~~-~~~~~l~~~~~~~~~ 111 (219)
T cd06913 84 SGRYLCFLDSDDV-MMPQRIRLQYEAALQ 111 (219)
T ss_pred CCCEEEEECCCcc-CChhHHHHHHHHHHh
Confidence 9999999999999 588999887765543
No 46
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.30 E-value=5.8e-11 Score=119.13 Aligned_cols=106 Identities=19% Similarity=0.292 Sum_probs=77.6
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
|+||+|| |+ ..+.+||.|+++++|+. .+|+|+|||+++.|.+.+
T Consensus 1 ivip~~n---~~-~~l~~~l~sl~~q~~~~--~eiivvdd~s~d~t~~~~------------------------------ 44 (182)
T cd06420 1 LIITTYN---RP-EALELVLKSVLNQSILP--FEVIIADDGSTEETKELI------------------------------ 44 (182)
T ss_pred CEEeecC---Ch-HHHHHHHHHHHhccCCC--CEEEEEeCCCchhHHHHH------------------------------
Confidence 6799999 77 57899999999999886 589999999987431111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCC
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLT 515 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~t 515 (1049)
+++.+. . .. +++++.+++ +..+|++|+|.+++ .+
T Consensus 45 -----------~~~~~~------------------~--------~~-~~~~~~~~~----~~~~~~~~~n~g~~----~a 78 (182)
T cd06420 45 -----------EEFKSQ------------------F--------PI-PIKHVWQED----EGFRKAKIRNKAIA----AA 78 (182)
T ss_pred -----------HHHHhh------------------c--------CC-ceEEEEcCC----cchhHHHHHHHHHH----Hh
Confidence 111100 0 00 145554432 22479999999999 57
Q ss_pred CCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 045222 516 NSPYLLNLDCDHYINNSKALREAMCFMMDP 545 (1049)
Q Consensus 516 ng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp 545 (1049)
++++|+++|+|.+ +.|++|.+++.++ ++
T Consensus 79 ~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 79 KGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred cCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 8999999999999 6899999999877 44
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.30 E-value=6.2e-11 Score=122.56 Aligned_cols=100 Identities=20% Similarity=0.181 Sum_probs=75.9
Q ss_pred eEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhh
Q 045222 354 VDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDK 433 (1049)
Q Consensus 354 VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~ 433 (1049)
|+|+||+|| |+. .+.++|.|++++.|+ .++|+|+||++++.|.+. ++
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d~~~~~-------~~-------------------- 47 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTDGTVAI-------AR-------------------- 47 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCccHHHH-------Hh--------------------
Confidence 689999999 875 789999999999995 478999999998733110 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccC
Q 045222 434 VLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAV 513 (1049)
Q Consensus 434 ~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav 513 (1049)
+ +.+.++..+ .+|++|+|.++.
T Consensus 48 -----------------~------------------------------~~~~~~~~~-------~g~~~a~n~g~~---- 69 (221)
T cd02522 48 -----------------S------------------------------AGVVVISSP-------KGRARQMNAGAA---- 69 (221)
T ss_pred -----------------c------------------------------CCeEEEeCC-------cCHHHHHHHHHH----
Confidence 0 124555422 358999999998
Q ss_pred CCCCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 045222 514 LTNSPYLLNLDCDHYINNSKALREAMCFMMDP 545 (1049)
Q Consensus 514 ~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp 545 (1049)
.+++++|+++|+|.+ +.|++|.+++..+.++
T Consensus 70 ~a~~~~i~~~D~D~~-~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 70 AARGDWLLFLHADTR-LPPDWDAAIIETLRAD 100 (221)
T ss_pred hccCCEEEEEcCCCC-CChhHHHHHHHHhhcC
Confidence 467999999999999 5899999987655544
No 48
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.29 E-value=7.4e-11 Score=125.92 Aligned_cols=124 Identities=19% Similarity=0.137 Sum_probs=85.9
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKID 428 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~ 428 (1049)
...|.|+|+||+|| |.. .+..++.++.....+...++|+|+|||+++.|.+.+.+.
T Consensus 6 ~~~~~vsVvIp~yn---e~~-~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~-------------------- 61 (243)
T PLN02726 6 EGAMKYSIIVPTYN---ERL-NIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQL-------------------- 61 (243)
T ss_pred CCCceEEEEEccCC---chh-hHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHH--------------------
Confidence 35789999999999 874 556676666543222236899999999998653322110
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHH
Q 045222 429 YLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALV 508 (1049)
Q Consensus 429 ~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~l 508 (1049)
+++|. -+++.++.+++ ..+|++|+|+++
T Consensus 62 -----------------~~~~~------------------------------~~~v~~~~~~~-----n~G~~~a~n~g~ 89 (243)
T PLN02726 62 -----------------QKVYG------------------------------EDRILLRPRPG-----KLGLGTAYIHGL 89 (243)
T ss_pred -----------------HHhcC------------------------------CCcEEEEecCC-----CCCHHHHHHHHH
Confidence 00000 12356665543 356999999999
Q ss_pred HhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecC
Q 045222 509 RVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFP 557 (1049)
Q Consensus 509 rvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~P 557 (1049)
+ .+.+++|+++|+|.. .+|++|.+++..+.++ +...|...
T Consensus 90 ~----~a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 90 K----HASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred H----HcCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 8 578999999999999 6999999999877664 35555543
No 49
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.27 E-value=8.9e-11 Score=114.58 Aligned_cols=110 Identities=23% Similarity=0.241 Sum_probs=81.7
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
|+||+|| |+ ..+.+|+.|+.+++||. .+++|+|||+.+.|.+.+.
T Consensus 1 vii~~~~---~~-~~l~~~l~sl~~~~~~~--~~iiivdd~s~~~~~~~~~----------------------------- 45 (166)
T cd04186 1 IIIVNYN---SL-EYLKACLDSLLAQTYPD--FEVIVVDNASTDGSVELLR----------------------------- 45 (166)
T ss_pred CEEEecC---CH-HHHHHHHHHHHhccCCC--eEEEEEECCCCchHHHHHH-----------------------------
Confidence 5899999 75 78999999999999954 6899999999863322111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCC
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLT 515 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~t 515 (1049)
++ .+++.++..++ +.++++|+|.+++ .+
T Consensus 46 ---------------~~----------------------------~~~~~~~~~~~-----~~g~~~a~n~~~~----~~ 73 (166)
T cd04186 46 ---------------EL----------------------------FPEVRLIRNGE-----NLGFGAGNNQGIR----EA 73 (166)
T ss_pred ---------------Hh----------------------------CCCeEEEecCC-----CcChHHHhhHHHh----hC
Confidence 00 01245555432 4679999999999 45
Q ss_pred CCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEEecC
Q 045222 516 NSPYLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYVQFP 557 (1049)
Q Consensus 516 ng~~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~VQ~P 557 (1049)
++++|+++|+|.+ +.++++.+.+-.+ .++ +++.|+..
T Consensus 74 ~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 74 KGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred CCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 8999999999999 6899999998755 444 67766555
No 50
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.26 E-value=2.1e-11 Score=125.94 Aligned_cols=61 Identities=21% Similarity=0.115 Sum_probs=52.5
Q ss_pred CCCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCC
Q 045222 496 NNHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGIN 564 (1049)
Q Consensus 496 ~h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid 564 (1049)
.-+.|..||..+++. ..++++|+++|+|+. .+|++|++++..|.|| +++.|..+.++.+.+
T Consensus 14 g~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~ 74 (175)
T PF13506_consen 14 GCNPKVNNLAQGLEA---GAKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPAR 74 (175)
T ss_pred CCChHHHHHHHHHHh---hCCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCc
Confidence 368999999999993 279999999999999 5899999999999998 799998877755543
No 51
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.24 E-value=1.4e-09 Score=129.06 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=44.9
Q ss_pred cccchHHHHHHHHHC--CcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhh
Q 045222 745 SVTKDMLTGLIMHCH--GWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEV 798 (1049)
Q Consensus 745 svTEDi~Tg~rLh~r--GWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI 798 (1049)
.+.||=.++..|..+ |||..|+....+ +..+|+|++.+++||+||..|++--
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~a--~T~aP~t~~vflsQRRRWinSTi~N 377 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAVA--YTDAPETFSVFLSQRRRWINSTIHN 377 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcccccc--cccCCccHHHHHHHhhhccchhHhh
Confidence 577998888777776 899999976666 8999999999999999999999843
No 52
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.24 E-value=2.7e-10 Score=118.11 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=84.5
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
|+||+|| |+ ..+.++|.|+.++.|+ ..++|+|+|||+++.|.+.+
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiiVDd~S~d~t~~~~------------------------------ 45 (224)
T cd06442 1 IIIPTYN---ER-ENIPELIERLDAALKG-IDYEIIVVDDNSPDGTAEIV------------------------------ 45 (224)
T ss_pred CeEeccc---hh-hhHHHHHHHHHHhhcC-CCeEEEEEeCCCCCChHHHH------------------------------
Confidence 6899999 87 4688999999999982 34899999999987542211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCC
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLT 515 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~t 515 (1049)
+.|.+ ..|++.++..++ +.+|++|+|.+++ .+
T Consensus 46 -----------~~~~~----------------------------~~~~i~~~~~~~-----n~G~~~a~n~g~~----~a 77 (224)
T cd06442 46 -----------RELAK----------------------------EYPRVRLIVRPG-----KRGLGSAYIEGFK----AA 77 (224)
T ss_pred -----------HHHHH----------------------------hCCceEEEecCC-----CCChHHHHHHHHH----Hc
Confidence 11111 013355565554 4679999999999 57
Q ss_pred CCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecC
Q 045222 516 NSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFP 557 (1049)
Q Consensus 516 ng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~P 557 (1049)
.+++|+++|+|.. .+|++|..++..+.++ +...|..+
T Consensus 78 ~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 78 RGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred CCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 8899999999998 6899999999987665 34555554
No 53
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.22 E-value=1.8e-11 Score=118.37 Aligned_cols=164 Identities=22% Similarity=0.197 Sum_probs=110.4
Q ss_pred EEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhh
Q 045222 355 DIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKV 434 (1049)
Q Consensus 355 DVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~ 434 (1049)
+|+||||| |+ ..+.+|+.|++.+.++. .+|+|+|||+++-|.+.+
T Consensus 1 Svvip~~n---~~-~~l~~~l~sl~~q~~~~--~eiivvdd~s~d~~~~~~----------------------------- 45 (169)
T PF00535_consen 1 SVVIPTYN---EA-EYLERTLESLLKQTDPD--FEIIVVDDGSTDETEEIL----------------------------- 45 (169)
T ss_dssp EEEEEESS----T-TTHHHHHHHHHHHSGCE--EEEEEEECS-SSSHHHHH-----------------------------
T ss_pred CEEEEeeC---CH-HHHHHHHHHHhhccCCC--EEEEEecccccccccccc-----------------------------
Confidence 68999999 74 68899999999995554 789999999986331111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCC
Q 045222 435 LASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVL 514 (1049)
Q Consensus 435 ~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~ 514 (1049)
+++. + ..+++.|+.+++ + .++++|+|.+++ .
T Consensus 46 ---------------~~~~-------~------------------~~~~i~~i~~~~----n-~g~~~~~n~~~~----~ 76 (169)
T PF00535_consen 46 ---------------EEYA-------E------------------SDPNIRYIRNPE----N-LGFSAARNRGIK----H 76 (169)
T ss_dssp ---------------HHHH-------C------------------CSTTEEEEEHCC----C-SHHHHHHHHHHH----H
T ss_pred ---------------cccc-------c------------------cccccccccccc----c-cccccccccccc----c
Confidence 1110 0 124589999875 2 389999999999 5
Q ss_pred CCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccch--hhhhhHhhhccccccCCCccc
Q 045222 515 TNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFAN--RKTVFFDINMKGLDGIQGPIN 592 (1049)
Q Consensus 515 tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan--~~~vFfdi~~~glDg~qgp~y 592 (1049)
+.++||+++|+|.+ ..+++|.+++.++.+. +..+.+...+....+......... ....++............+.+
T Consensus 77 a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
T PF00535_consen 77 AKGEYILFLDDDDI-ISPDWLEELVEALEKN--PPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFF 153 (169)
T ss_dssp --SSEEEEEETTEE-E-TTHHHHHHHHHHHC--TTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEE
T ss_pred cceeEEEEeCCCce-EcHHHHHHHHHHHHhC--CCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccc
Confidence 78999999999999 5788999999988773 124444444444443322222111 123344444555666778899
Q ss_pred ccccchhhhhhhc
Q 045222 593 VGTGCVFRRQAFY 605 (1049)
Q Consensus 593 vGTgcvfRR~ALy 605 (1049)
+|.++++||++|-
T Consensus 154 ~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 154 IGSCALFRRSVFE 166 (169)
T ss_dssp SSSCEEEEEHHHH
T ss_pred cccEEEEEHHHHH
Confidence 9999999999873
No 54
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.21 E-value=2.3e-10 Score=117.42 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=84.3
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
|+||||| |+ ..+.++|.|++++.||. .+|+|+|||+++.|.+.+.
T Consensus 1 viI~~~n---~~-~~l~~~l~sl~~q~~~~--~eiiivD~~s~d~t~~~~~----------------------------- 45 (202)
T cd04185 1 AVVVTYN---RL-DLLKECLDALLAQTRPP--DHIIVIDNASTDGTAEWLT----------------------------- 45 (202)
T ss_pred CEEEeeC---CH-HHHHHHHHHHHhccCCC--ceEEEEECCCCcchHHHHH-----------------------------
Confidence 6899999 77 68999999999999995 4799999999974421110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCC
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLT 515 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~t 515 (1049)
++ + ...| +.|+.-++ ..+.+.++|.+++..- ..
T Consensus 46 ---------------~~----------------~---------~~~~-i~~~~~~~-----n~g~~~~~n~~~~~a~-~~ 78 (202)
T cd04185 46 ---------------SL----------------G---------DLDN-IVYLRLPE-----NLGGAGGFYEGVRRAY-EL 78 (202)
T ss_pred ---------------Hh----------------c---------CCCc-eEEEECcc-----ccchhhHHHHHHHHHh-cc
Confidence 00 0 0112 56665544 3467888998887432 45
Q ss_pred CCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccc
Q 045222 516 NSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRF 560 (1049)
Q Consensus 516 ng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F 560 (1049)
.+++++++|+|.+ ++|++|++++..+.+| +++.| +|.++
T Consensus 79 ~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~-~~~~~ 117 (202)
T cd04185 79 GYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL-APLVL 117 (202)
T ss_pred CCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe-cceeE
Confidence 7999999999999 6899999999888776 46655 34343
No 55
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.18 E-value=1.6e-10 Score=120.92 Aligned_cols=113 Identities=13% Similarity=0.090 Sum_probs=77.4
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
++||+|| |+...+.+||.|++++. .+|+|+|||+++.+..
T Consensus 1 ~vI~~yn---~~~~~l~~~l~sl~~q~-----~~iivvDn~s~~~~~~-------------------------------- 40 (237)
T cd02526 1 AVVVTYN---PDLSKLKELLAALAEQV-----DKVVVVDNSSGNDIEL-------------------------------- 40 (237)
T ss_pred CEEEEec---CCHHHHHHHHHHHhccC-----CEEEEEeCCCCccHHH--------------------------------
Confidence 4799999 88678999999999972 4689999987752100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCC
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLT 515 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~t 515 (1049)
..++ .-+.+.++..++ ..++++|+|.+++.+. -.
T Consensus 41 -------------~~~~---------------------------~~~~i~~i~~~~-----n~G~~~a~N~g~~~a~-~~ 74 (237)
T cd02526 41 -------------RLRL---------------------------NSEKIELIHLGE-----NLGIAKALNIGIKAAL-EN 74 (237)
T ss_pred -------------Hhhc---------------------------cCCcEEEEECCC-----ceehHHhhhHHHHHHH-hC
Confidence 0000 002367776654 3459999999999431 12
Q ss_pred CCCEEEEecCCCCCChHHHHHHHH---Hhh-cCCCCCceeEEEecCccc
Q 045222 516 NSPYLLNLDCDHYINNSKALREAM---CFM-MDPLLGKRVCYVQFPRRF 560 (1049)
Q Consensus 516 ng~~Il~lDaD~~~~~p~~Lr~~m---~ff-~Dp~~g~~v~~VQ~PQ~F 560 (1049)
+++||+++|+|.+ ++|++|.+++ ..+ .++ .++.+ .|+..
T Consensus 75 ~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~----~~~~~-~~~~~ 117 (237)
T cd02526 75 GADYVLLFDQDSV-PPPDMVEKLLAYKILSDKNS----NIGAV-GPRII 117 (237)
T ss_pred CCCEEEEECCCCC-cCHhHHHHHHHHHHhhccCC----CeEEE-eeeEE
Confidence 5699999999999 5899999985 333 344 55544 55544
No 56
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.16 E-value=7e-10 Score=125.10 Aligned_cols=110 Identities=14% Similarity=0.212 Sum_probs=86.6
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhh
Q 045222 350 KLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDY 429 (1049)
Q Consensus 350 ~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~ 429 (1049)
..|.|+|+||+|| ++ ..+.++|.|++++.|+. ++|+|+|||+++.|.+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~~--~EIIiVdDgStD~t~~-------------------------- 51 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWTA--LEIIIVNDGSTDNSVE-------------------------- 51 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCCC--eEEEEEeCCCCccHHH--------------------------
Confidence 3588999999999 66 58899999999999985 7999999999985422
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHH
Q 045222 430 LKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVR 509 (1049)
Q Consensus 430 lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lr 509 (1049)
+.++|.+ +.|++.++..+ +.+.++|.|.++.
T Consensus 52 ---------------i~~~~~~----------------------------~~~~i~vi~~~------n~G~~~arN~gl~ 82 (328)
T PRK10073 52 ---------------IAKHYAE----------------------------NYPHVRLLHQA------NAGVSVARNTGLA 82 (328)
T ss_pred ---------------HHHHHHh----------------------------hCCCEEEEECC------CCChHHHHHHHHH
Confidence 1122221 12567777532 4579999999999
Q ss_pred hccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 045222 510 VSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDP 545 (1049)
Q Consensus 510 vSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp 545 (1049)
.++|+||+++|+|.+ ..|+.|.+++..+.++
T Consensus 83 ----~a~g~yi~flD~DD~-~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 83 ----VATGKYVAFPDADDV-VYPTMYETLMTMALED 113 (328)
T ss_pred ----hCCCCEEEEECCCCc-cChhHHHHHHHHHHhC
Confidence 589999999999999 5899999999876543
No 57
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.13 E-value=5.4e-10 Score=107.76 Aligned_cols=163 Identities=30% Similarity=0.396 Sum_probs=103.1
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
|+||||| |+ ..+.+||.|++++.|+. .+|+|+|||+++.|.+.+
T Consensus 1 Viip~~n---~~-~~l~~~l~sl~~q~~~~--~~iivvdd~s~d~t~~~~------------------------------ 44 (180)
T cd06423 1 IIVPAYN---EE-AVIERTIESLLALDYPK--LEVIVVDDGSTDDTLEIL------------------------------ 44 (180)
T ss_pred CeecccC---hH-HHHHHHHHHHHhCCCCc--eEEEEEeCCCccchHHHH------------------------------
Confidence 6799999 77 79999999999999964 789999999987432111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCC
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLT 515 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~t 515 (1049)
+++... ..+.++++..++ ..+|+.|+|.+++ .+
T Consensus 45 -----------~~~~~~---------------------------~~~~~~~~~~~~-----~~g~~~~~n~~~~----~~ 77 (180)
T cd06423 45 -----------EELAAL---------------------------YIRRVLVVRDKE-----NGGKAGALNAGLR----HA 77 (180)
T ss_pred -----------HHHhcc---------------------------ccceEEEEEecc-----cCCchHHHHHHHH----hc
Confidence 001000 002245555543 4679999999999 45
Q ss_pred CCCEEEEecCCCCCChHHHHHHHH-HhhcCCCCCceeEEEecCccccCCCCc--ccc-chhhhhhHhhhccccccCC-Cc
Q 045222 516 NSPYLLNLDCDHYINNSKALREAM-CFMMDPLLGKRVCYVQFPRRFDGINQD--DRF-ANRKTVFFDINMKGLDGIQ-GP 590 (1049)
Q Consensus 516 ng~~Il~lDaD~~~~~p~~Lr~~m-~ff~Dp~~g~~v~~VQ~PQ~F~nid~~--D~y-an~~~vFfdi~~~glDg~q-gp 590 (1049)
++++|+++|+|.. ..|++|.+++ .++.++ +++.|...+...+.+.+ ..+ .......+.....+..... -.
T Consensus 78 ~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
T cd06423 78 KGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVL 152 (180)
T ss_pred CCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheeccee
Confidence 9999999999999 5899999995 555666 56666655444333211 110 0111111111112111112 25
Q ss_pred ccccccchhhhhhhcC
Q 045222 591 INVGTGCVFRRQAFYG 606 (1049)
Q Consensus 591 ~yvGTgcvfRR~ALyg 606 (1049)
.+.|++.++||++|..
T Consensus 153 ~~~g~~~~~~~~~~~~ 168 (180)
T cd06423 153 VLSGAFGAFRREALRE 168 (180)
T ss_pred ecCchHHHHHHHHHHH
Confidence 6678889999999863
No 58
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.05 E-value=4.1e-09 Score=114.39 Aligned_cols=105 Identities=18% Similarity=0.111 Sum_probs=74.3
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCC-CCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhh
Q 045222 352 MPVDIFVSTVDPIKEPSLVTANTVLSILAVD-YPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYL 430 (1049)
Q Consensus 352 P~VDVfV~t~nP~kEpp~vv~~Tvls~lalD-YP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~l 430 (1049)
|.|+|+||||| |+ ..+.+||.|++++. .+...++|+|+|||++|.|.+-+.
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~------------------------ 52 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLE------------------------ 52 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHH------------------------
Confidence 67999999999 76 57899999998642 233358999999999985533211
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHh
Q 045222 431 KDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRV 510 (1049)
Q Consensus 431 k~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrv 510 (1049)
+|.. . +++.+++.+ .+++++|+|.+++
T Consensus 53 -----------------~~~~----------------------------~-~~i~~i~~~------~~G~~~A~N~Gi~- 79 (248)
T PRK10063 53 -----------------NLNG----------------------------I-FNLRFVSEP------DNGIYDAMNKGIA- 79 (248)
T ss_pred -----------------Hhcc----------------------------c-CCEEEEECC------CCCHHHHHHHHHH-
Confidence 1110 0 125666532 2479999999999
Q ss_pred ccCCCCCCEEEEecCCCCCChHHHHHHHHHh
Q 045222 511 SAVLTNSPYLLNLDCDHYINNSKALREAMCF 541 (1049)
Q Consensus 511 Sav~tng~~Il~lDaD~~~~~p~~Lr~~m~f 541 (1049)
.+.|++|+.+|+|.. ..|+.++....+
T Consensus 80 ---~a~g~~v~~ld~DD~-~~~~~~~~~~~~ 106 (248)
T PRK10063 80 ---MAQGRFALFLNSGDI-FHQDAANFVRQL 106 (248)
T ss_pred ---HcCCCEEEEEeCCcc-cCcCHHHHHHHH
Confidence 578999999999988 467765543333
No 59
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.03 E-value=3.6e-09 Score=109.88 Aligned_cols=117 Identities=20% Similarity=0.143 Sum_probs=82.9
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCC--CCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDY--PVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDK 433 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDY--P~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~ 433 (1049)
|+||+|| |+ ..+.++|.++++..| +...++|+|+|||+++.|.+.+
T Consensus 1 iiip~yN---~~-~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~---------------------------- 48 (211)
T cd04188 1 VVIPAYN---EE-KRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVA---------------------------- 48 (211)
T ss_pred CEEcccC---hH-HHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHH----------------------------
Confidence 6899999 77 578889999988765 4445899999999998542211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCc-EEEEeccCCCCCCCCChHHHHHHHHHhcc
Q 045222 434 VLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPR-LVYVSREKRPGFNNHKKAGAMNALVRVSA 512 (1049)
Q Consensus 434 ~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~-lvYvsRekrpg~~h~~KAGALN~~lrvSa 512 (1049)
++|.+ ..|. +.++..++ ..+|++|+|.+++
T Consensus 49 -------------~~~~~----------------------------~~~~~i~~i~~~~-----n~G~~~a~~~g~~--- 79 (211)
T cd04188 49 -------------RKLAR----------------------------KNPALIRVLTLPK-----NRGKGGAVRAGML--- 79 (211)
T ss_pred -------------HHHHH----------------------------hCCCcEEEEEccc-----CCCcHHHHHHHHH---
Confidence 11111 0122 35555443 2469999999999
Q ss_pred CCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCcc
Q 045222 513 VLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRR 559 (1049)
Q Consensus 513 v~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~ 559 (1049)
.+.+++|+++|+|.. .+|+.|.+++..+.++ ....|..+..
T Consensus 80 -~a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~ 120 (211)
T cd04188 80 -AARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRA 120 (211)
T ss_pred -HhcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEee
Confidence 578999999999999 6899999999886554 2444555433
No 60
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.02 E-value=7.7e-09 Score=114.52 Aligned_cols=110 Identities=20% Similarity=0.330 Sum_probs=84.7
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhh
Q 045222 350 KLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDY 429 (1049)
Q Consensus 350 ~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~ 429 (1049)
..|.|+|+||||| ++. .+.+||.|+++++||. ++++|+|||+++ .+.+
T Consensus 3 ~~p~VSVIip~yN---~~~-~l~~~l~Svl~Qt~~~--~EiIVVDDgS~~--~~~~------------------------ 50 (279)
T PRK10018 3 DNPLISIYMPTWN---RQQ-LAIRAIKSVLRQDYSN--WEMIIVDDCSTS--WEQL------------------------ 50 (279)
T ss_pred CCCEEEEEEEeCC---CHH-HHHHHHHHHHhCCCCC--eEEEEEECCCCC--HHHH------------------------
Confidence 4688999999999 775 5678999999999996 799999999973 1100
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHH
Q 045222 430 LKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVR 509 (1049)
Q Consensus 430 lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lr 509 (1049)
++|.+- + .-|++.|+..++ ..+++.|+|.++.
T Consensus 51 -----------------~~~~~~---------------~-----------~~~ri~~i~~~~-----n~G~~~a~N~gi~ 82 (279)
T PRK10018 51 -----------------QQYVTA---------------L-----------NDPRITYIHNDI-----NSGACAVRNQAIM 82 (279)
T ss_pred -----------------HHHHHH---------------c-----------CCCCEEEEECCC-----CCCHHHHHHHHHH
Confidence 011100 0 125688887654 4679999999999
Q ss_pred hccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 045222 510 VSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMD 544 (1049)
Q Consensus 510 vSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~D 544 (1049)
.++|+||+.+|+|.+ ..|+.|.+.+.++..
T Consensus 83 ----~a~g~~I~~lDaDD~-~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 83 ----LAQGEYITGIDDDDE-WTPNRLSVFLAHKQQ 112 (279)
T ss_pred ----HcCCCEEEEECCCCC-CCccHHHHHHHHHHh
Confidence 589999999999999 479999998887653
No 61
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.01 E-value=1.8e-10 Score=95.09 Aligned_cols=48 Identities=31% Similarity=0.946 Sum_probs=29.2
Q ss_pred cCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 39 CHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 39 CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
|.+|.+++ +++ |..|.+| +|+|.|||.||...++++++.||.||++|+
T Consensus 1 cp~C~e~~--d~~-d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DET-DKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CC-CTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccC-CCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 78999998 666 7789999 999999999999888888999999999996
No 62
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.00 E-value=3.9e-09 Score=106.05 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=89.1
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
|+||+|| |+ ..+.+|+.|+..+.|+....+|+|+|||+++.|.+.+
T Consensus 1 iii~~~n---~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~------------------------------ 46 (185)
T cd04179 1 VVIPAYN---EE-ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIA------------------------------ 46 (185)
T ss_pred CeecccC---hH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHH------------------------------
Confidence 5799999 76 6788999999999996556899999999987432211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCC
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLT 515 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~t 515 (1049)
+.|.+ ..|.+.++..+++ .+|++|+|.+++ .+
T Consensus 47 -----------~~~~~----------------------------~~~~~~~~~~~~n-----~G~~~a~n~g~~----~a 78 (185)
T cd04179 47 -----------RELAA----------------------------RVPRVRVIRLSRN-----FGKGAAVRAGFK----AA 78 (185)
T ss_pred -----------HHHHH----------------------------hCCCeEEEEccCC-----CCccHHHHHHHH----Hh
Confidence 11111 1233566655543 359999999999 57
Q ss_pred CCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccC
Q 045222 516 NSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDG 562 (1049)
Q Consensus 516 ng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~n 562 (1049)
.+++|+++|+|-. ..|++|.+++-.+..+ +..+|+.+....+
T Consensus 79 ~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 79 RGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred cCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 8899999999998 5899999999875554 4666777766554
No 63
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.83 E-value=5.2e-08 Score=106.20 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=51.1
Q ss_pred CcEEEEeccCCCCCCCCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCcccc
Q 045222 482 PRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFD 561 (1049)
Q Consensus 482 P~lvYvsRekrpg~~h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~ 561 (1049)
|++.|+..++ ..+.|+|+|.+++.. .-.++++|+++|.|.+ +.+++|.+++..+..+ +.+++.|. |..++
T Consensus 45 ~~i~~i~~~~-----N~G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~~ 114 (281)
T TIGR01556 45 QKIALIHLGD-----NQGIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFFD 114 (281)
T ss_pred CCeEEEECCC-----CcchHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEEc
Confidence 4578887553 457999999999842 1237899999999999 5799999999877542 23677775 44433
No 64
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.82 E-value=3.7e-08 Score=99.57 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=64.9
Q ss_pred CcEEEEeccCCCCCCCCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCcccc
Q 045222 482 PRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFD 561 (1049)
Q Consensus 482 P~lvYvsRekrpg~~h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~ 561 (1049)
|++.++..++ +.+|++|+|.+++ .+.+++|+++|+|.. ..+++|.+++..+ ++ +.++.+..... .
T Consensus 55 ~~i~~i~~~~-----n~G~~~a~n~g~~----~a~~d~i~~~D~D~~-~~~~~l~~l~~~~-~~--~~~~v~g~~~~--~ 119 (181)
T cd04187 55 PRVKVIRLSR-----NFGQQAALLAGLD----HARGDAVITMDADLQ-DPPELIPEMLAKW-EE--GYDVVYGVRKN--R 119 (181)
T ss_pred CCEEEEEecC-----CCCcHHHHHHHHH----hcCCCEEEEEeCCCC-CCHHHHHHHHHHH-hC--CCcEEEEEecC--C
Confidence 3467776544 4579999999999 578899999999999 5899999999764 33 12444433222 1
Q ss_pred CCCCccccchhhhhhHhhhccccccCCCcccccccchhhhhhhcC
Q 045222 562 GINQDDRFANRKTVFFDINMKGLDGIQGPINVGTGCVFRRQAFYG 606 (1049)
Q Consensus 562 nid~~D~yan~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg 606 (1049)
+.....++.+. .++. ....+.+..-+...|+..++||+++-.
T Consensus 120 ~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~ 161 (181)
T cd04187 120 KESWLKRLTSK--LFYR-LINKLSGVDIPDNGGDFRLMDRKVVDA 161 (181)
T ss_pred cchHHHHHHHH--HHHH-HHHHHcCCCCCCCCCCEEEEcHHHHHH
Confidence 11111111111 1111 112223344455667778999999853
No 65
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.82 E-value=9.3e-08 Score=108.35 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=82.9
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcC------CCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSILAV------DYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWY 422 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lal------DYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~Y 422 (1049)
...|.|+|+||+|| |.. .+..++.++.+. .+|...++|+|+|||++|.|.+.+.+
T Consensus 67 ~~~~~isVVIP~yN---e~~-~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~--------------- 127 (333)
T PTZ00260 67 DSDVDLSIVIPAYN---EED-RLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKD--------------- 127 (333)
T ss_pred CCCeEEEEEEeeCC---CHH-HHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHH---------------
Confidence 45789999999999 885 577788877653 24555689999999999866332211
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHH
Q 045222 423 FAQKIDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAG 502 (1049)
Q Consensus 423 F~~k~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAG 502 (1049)
|.+- + . +.-+++.++..++ ..+|++
T Consensus 128 --------------------------~~~~-----------------~-~------~~~~~i~vi~~~~-----N~G~~~ 152 (333)
T PTZ00260 128 --------------------------FWRQ-----------------N-I------NPNIDIRLLSLLR-----NKGKGG 152 (333)
T ss_pred --------------------------HHHh-----------------c-C------CCCCcEEEEEcCC-----CCChHH
Confidence 1100 0 0 0012356665443 457999
Q ss_pred HHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 045222 503 AMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMD 544 (1049)
Q Consensus 503 ALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~D 544 (1049)
|+|++++ .+.|++|+++|+|.. .+++.+.+++..+.+
T Consensus 153 A~~~Gi~----~a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 153 AVRIGML----ASRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred HHHHHHH----HccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 9999999 468999999999999 689999888876653
No 66
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.77 E-value=8e-08 Score=107.78 Aligned_cols=123 Identities=17% Similarity=0.102 Sum_probs=84.7
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhh
Q 045222 350 KLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDY 429 (1049)
Q Consensus 350 ~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~ 429 (1049)
.-|.|+|+||+|| |+ ..+.++|.++.++.++....+|+|+|||++|.|.+.+.+.
T Consensus 29 ~~~~vSVVIPayN---ee-~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~--------------------- 83 (306)
T PRK13915 29 AGRTVSVVLPALN---EE-ETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAA--------------------- 83 (306)
T ss_pred CCCCEEEEEecCC---cH-HHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHh---------------------
Confidence 4689999999999 88 5788899999987652223589999999998653322110
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHH
Q 045222 430 LKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVR 509 (1049)
Q Consensus 430 lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lr 509 (1049)
..++- ++...+.+.. ...+|++|+|.++.
T Consensus 84 -----------------------~~~v~------------------------~~~~~~~~~~----~n~Gkg~A~~~g~~ 112 (306)
T PRK13915 84 -----------------------GARVV------------------------SREEILPELP----PRPGKGEALWRSLA 112 (306)
T ss_pred -----------------------cchhh------------------------cchhhhhccc----cCCCHHHHHHHHHH
Confidence 00000 0000000100 24579999999998
Q ss_pred hccCCCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCceeEEEec
Q 045222 510 VSAVLTNSPYLLNLDCDHYINNSKALREAMCFMM-DPLLGKRVCYVQF 556 (1049)
Q Consensus 510 vSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~-Dp~~g~~v~~VQ~ 556 (1049)
.+++++|+++|+|....+|++|.+++..+. || ++++|..
T Consensus 113 ----~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 113 ----ATTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred ----hcCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 478999999999996358999999997664 77 5676764
No 67
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.67 E-value=4.1e-07 Score=85.68 Aligned_cols=113 Identities=29% Similarity=0.368 Sum_probs=80.6
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhhhhh
Q 045222 356 IFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKDKVL 435 (1049)
Q Consensus 356 VfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~~~~ 435 (1049)
|+||++| |+ ..+..|+.|++..+|+. .+++|+||++++.+.+.+.+
T Consensus 1 iii~~~~---~~-~~l~~~l~s~~~~~~~~--~~i~i~~~~~~~~~~~~~~~---------------------------- 46 (156)
T cd00761 1 VIIPAYN---EE-PYLERCLESLLAQTYPN--FEVIVVDDGSTDGTLEILEE---------------------------- 46 (156)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCccc--eEEEEEeCCCCccHHHHHHH----------------------------
Confidence 5799998 76 57889999999999954 67999999988632211110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCC
Q 045222 436 ASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLT 515 (1049)
Q Consensus 436 ~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~t 515 (1049)
.... .+...++.++ .+.+|++++|.++.. .
T Consensus 47 ------------~~~~-----------------------------~~~~~~~~~~-----~~~g~~~~~~~~~~~----~ 76 (156)
T cd00761 47 ------------YAKK-----------------------------DPRVIRVINE-----ENQGLAAARNAGLKA----A 76 (156)
T ss_pred ------------HHhc-----------------------------CCCeEEEEec-----CCCChHHHHHHHHHH----h
Confidence 0000 0113444444 356899999999994 5
Q ss_pred CCCEEEEecCCCCCChHHHHHHHHH-hhcCCCCCceeEEEecC
Q 045222 516 NSPYLLNLDCDHYINNSKALREAMC-FMMDPLLGKRVCYVQFP 557 (1049)
Q Consensus 516 ng~~Il~lDaD~~~~~p~~Lr~~m~-ff~Dp~~g~~v~~VQ~P 557 (1049)
++++++++|+|.+ ..|+++...+- +..++ +...|+.+
T Consensus 77 ~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 77 RGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred cCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 8999999999999 58899988744 44555 67777777
No 68
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.66 E-value=4.4e-07 Score=111.82 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=45.5
Q ss_pred cccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccch
Q 045222 745 SVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSV 796 (1049)
Q Consensus 745 svTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~l 796 (1049)
+..||=.+..++..+||+.-|+....+ ...+|+++..++.||+||..|.+
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~a--~t~~Pe~~~efl~QrrRW~~s~f 598 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASDA--ETEAPESFLEFLNQRRRWLNSIF 598 (862)
T ss_pred ccchhHHHHHHHHhccceeeeeccccc--cccCcHhHHHHHHHhhhhcccch
Confidence 488999999999999999999976665 89999999999999999999933
No 69
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.58 E-value=1.1e-06 Score=97.11 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=46.5
Q ss_pred CChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCc
Q 045222 498 HKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQD 566 (1049)
Q Consensus 498 ~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~ 566 (1049)
-.+|.|.|.++. .+++++|+++|+|.+ +.|++|.+++-+...=. ....+++-.|..|.+.+.+
T Consensus 74 f~~a~arN~g~~----~A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~~ 136 (281)
T PF10111_consen 74 FSRAKARNIGAK----YARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEGS 136 (281)
T ss_pred cCHHHHHHHHHH----HcCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchhh
Confidence 489999999999 579999999999999 68999999998321100 0134566667777655443
No 70
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.49 E-value=2.2e-06 Score=95.56 Aligned_cols=123 Identities=23% Similarity=0.255 Sum_probs=88.9
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhh
Q 045222 351 LMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYL 430 (1049)
Q Consensus 351 lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~l 430 (1049)
.|.+.++|+||| +...+.+++.++.+++||.+ .++++|+|+++.|.+.+.+.
T Consensus 2 ~~~i~~iiv~yn----~~~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~~~~~~---------------------- 53 (305)
T COG1216 2 MPKISIIIVTYN----RGEDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLEALKAR---------------------- 53 (305)
T ss_pred CcceEEEEEecC----CHHHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHHHHHhh----------------------
Confidence 478999999998 34678899999999999986 34478999987542211100
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHh
Q 045222 431 KDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRV 510 (1049)
Q Consensus 431 k~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrv 510 (1049)
..|.+.++.-.+. -+=||+.|.+++.
T Consensus 54 -------------------------------------------------~~~~v~~i~~~~N-----lG~agg~n~g~~~ 79 (305)
T COG1216 54 -------------------------------------------------FFPNVRLIENGEN-----LGFAGGFNRGIKY 79 (305)
T ss_pred -------------------------------------------------cCCcEEEEEcCCC-----ccchhhhhHHHHH
Confidence 0355788876543 4568889988774
Q ss_pred ccCCCCCC-EEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEEecCccccC
Q 045222 511 SAVLTNSP-YLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYVQFPRRFDG 562 (1049)
Q Consensus 511 Sav~tng~-~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~VQ~PQ~F~n 562 (1049)
. ..++. ++++++-|.+ .++++|.+++-.+ .+| .++.|+.-.+.++
T Consensus 80 a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~~~~~~~i~~~~ 126 (305)
T COG1216 80 A--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AAGVVGPLIRNYD 126 (305)
T ss_pred H--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CCeEeeeeEecCC
Confidence 2 23433 9999999977 6999999999766 455 6888877766544
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=98.38 E-value=2.7e-06 Score=96.20 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=76.2
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHc-CCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhh
Q 045222 351 LMPVDIFVSTVDPIKEPSLVTANTVLSILA-VDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDY 429 (1049)
Q Consensus 351 lP~VDVfV~t~nP~kEpp~vv~~Tvls~la-lDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~ 429 (1049)
.+.|+|+||+|| |+ ..+..++.++.+ ++-....++|+|+|||++|.|.+.+.+.+
T Consensus 5 ~~~vSVVIP~yN---E~-~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~-------------------- 60 (325)
T PRK10714 5 IKKVSVVIPVYN---EQ-ESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAA-------------------- 60 (325)
T ss_pred CCeEEEEEcccC---ch-hhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHH--------------------
Confidence 567999999999 87 355556655432 11111247999999999986643222110
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHH
Q 045222 430 LKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVR 509 (1049)
Q Consensus 430 lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lr 509 (1049)
++ .-++++.+..++ ..+|++|+|++++
T Consensus 61 --------------------~~----------------------------~~~~v~~i~~~~-----n~G~~~A~~~G~~ 87 (325)
T PRK10714 61 --------------------QA----------------------------PDSHIVAILLNR-----NYGQHSAIMAGFS 87 (325)
T ss_pred --------------------hh----------------------------cCCcEEEEEeCC-----CCCHHHHHHHHHH
Confidence 00 002355554432 3589999999998
Q ss_pred hccCCCCCCEEEEecCCCCCChHHHHHHHHHhhc
Q 045222 510 VSAVLTNSPYLLNLDCDHYINNSKALREAMCFMM 543 (1049)
Q Consensus 510 vSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~ 543 (1049)
.++|++++++|||.. .+|+.+.+++..+.
T Consensus 88 ----~A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 88 ----HVTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred ----hCCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 578999999999999 68999999997664
No 72
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=6.2e-06 Score=78.66 Aligned_cols=101 Identities=25% Similarity=0.272 Sum_probs=74.9
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhh
Q 045222 351 LMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYL 430 (1049)
Q Consensus 351 lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~l 430 (1049)
.|.++|+||||| |+ ..+.++|.|++++.|+. .+|+|+|||+++.|-+- +
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~~-------~------------------ 50 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTEI-------A------------------ 50 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHHH-------H------------------
Confidence 578999999999 77 78999999999999998 67999999999854221 1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHh
Q 045222 431 KDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRV 510 (1049)
Q Consensus 431 k~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrv 510 (1049)
++|..- .+++.+...+ ...+++.|+|.++.
T Consensus 51 ----------------~~~~~~----------------------------~~~~~~~~~~-----~~~g~~~~~~~~~~- 80 (291)
T COG0463 51 ----------------IEYGAK----------------------------DVRVIRLINE-----RNGGLGAARNAGLE- 80 (291)
T ss_pred ----------------HHHhhh----------------------------cceEEEeecc-----cCCChHHHHHhhHH-
Confidence 111110 0123333322 35789999999998
Q ss_pred ccCCCCCCEEEEecCCCCCChHHHHH
Q 045222 511 SAVLTNSPYLLNLDCDHYINNSKALR 536 (1049)
Q Consensus 511 Sav~tng~~Il~lDaD~~~~~p~~Lr 536 (1049)
...+++|+.+|+|.+ ..+...+
T Consensus 81 ---~~~~~~~~~~d~d~~-~~~~~~~ 102 (291)
T COG0463 81 ---YARGDYIVFLDADDQ-HPPELIP 102 (291)
T ss_pred ---hccCCEEEEEccCCC-CCHHHHH
Confidence 467799999999999 7766665
No 73
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=98.07 E-value=2.6e-05 Score=83.10 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=73.8
Q ss_pred ceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhhh
Q 045222 353 PVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLKD 432 (1049)
Q Consensus 353 ~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk~ 432 (1049)
+|+|+||||| |+ ..+.++|.|+..+. + +|+|+|||+++.|.+ .+
T Consensus 1 ~isvii~~~N---e~-~~l~~~l~sl~~~~---~--eiivvD~gStD~t~~-------i~-------------------- 44 (229)
T cd02511 1 TLSVVIITKN---EE-RNIERCLESVKWAV---D--EIIVVDSGSTDRTVE-------IA-------------------- 44 (229)
T ss_pred CEEEEEEeCC---cH-HHHHHHHHHHhccc---C--EEEEEeCCCCccHHH-------HH--------------------
Confidence 4899999999 87 47899999998662 1 799999999985421 11
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHhcc
Q 045222 433 KVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRVSA 512 (1049)
Q Consensus 433 ~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrvSa 512 (1049)
+ ++ + +.++.. + ..+.+.+.|.++.
T Consensus 45 --------------~---~~----------------~--------------~~v~~~-~-----~~g~~~~~n~~~~--- 68 (229)
T cd02511 45 --------------K---EY----------------G--------------AKVYQR-W-----WDGFGAQRNFALE--- 68 (229)
T ss_pred --------------H---Hc----------------C--------------CEEEEC-C-----CCChHHHHHHHHH---
Confidence 1 11 0 122333 2 3568999999998
Q ss_pred CCCCCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 045222 513 VLTNSPYLLNLDCDHYINNSKALREAMCFMMDP 545 (1049)
Q Consensus 513 v~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp 545 (1049)
.+.+++|+++|+|.. ..|+.+.++..++.++
T Consensus 69 -~a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 69 -LATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred -hCCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 578999999999999 5899999999887654
No 74
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.93 E-value=3.4e-05 Score=87.41 Aligned_cols=232 Identities=22% Similarity=0.319 Sum_probs=153.4
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKID 428 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~ 428 (1049)
..||+|+|+-|--+ -.| -..+.+.+-...+|| |++...+=+...| +|.+.-
T Consensus 82 ~~LPgVSiikPl~G---~d~-nl~~Nlesffts~Y~--~~ElLfcv~s~eD-------pAi~vv---------------- 132 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKG---VDP-NLYHNLESFFTSQYH--KYELLFCVESSED-------PAIEVV---------------- 132 (431)
T ss_pred CCCCCceEEeeccc---CCc-hhHHhHHHHHhhccC--ceEEEEEEccCCC-------cHHHHH----------------
Confidence 47999999999887 333 466789999999999 6787777666554 111100
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHH
Q 045222 429 YLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALV 508 (1049)
Q Consensus 429 ~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~l 508 (1049)
+.+-++|.. .| --+++.-++- .-+.|-.||=-+.
T Consensus 133 --------------~~Ll~kyp~----------------------Vd-------Aklf~gG~~v---g~npKInN~mpgy 166 (431)
T KOG2547|consen 133 --------------ERLLKKYPN----------------------VD-------AKLFFGGEKV---GLNPKINNMMPGY 166 (431)
T ss_pred --------------HHHHhhCCC----------------------cc-------eEEEEccccc---ccChhhhccCHHH
Confidence 111112221 01 0244555542 3567888888788
Q ss_pred HhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEE-ecCccccCCCCccccchhhhhhHhhhccccccC
Q 045222 509 RVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYV-QFPRRFDGINQDDRFANRKTVFFDINMKGLDGI 587 (1049)
Q Consensus 509 rvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~V-Q~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~ 587 (1049)
+ ....|+|++.|.|-.. .||.+....-=|+.++ ++|+| |+|-.++-.. ||.-+
T Consensus 167 ~----~a~ydlvlisDsgI~m-~pdtildm~t~M~she---kmalvtq~py~~dr~G------------f~atl------ 220 (431)
T KOG2547|consen 167 R----AAKYDLVLISDSGIFM-KPDTILDMATTMMSHE---KMALVTQTPYCKDRQG------------FDATL------ 220 (431)
T ss_pred H----HhcCCEEEEecCCeee-cCchHHHHHHhhhccc---ceeeecCCceeecccc------------chhhh------
Confidence 8 4789999999999994 8999999998888764 89998 7786665322 11111
Q ss_pred CCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCCccccccch
Q 045222 588 QGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTAPMCAWEGI 667 (1049)
Q Consensus 588 qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1049)
.-+|-||. +-|--|-| +|- |-.|.+
T Consensus 221 -e~~~fgTs--h~r~yl~~--------------n~~------~~~c~t-------------------------------- 245 (431)
T KOG2547|consen 221 -EQVYFGTS--HPRIYLSG--------------NVL------GFNCST-------------------------------- 245 (431)
T ss_pred -hheeeccC--CceEEEcc--------------ccc------cccccc--------------------------------
Confidence 11455553 22221111 000 001111
Q ss_pred hccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccccccccccccc
Q 045222 668 EEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVT 747 (1049)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvT 747 (1049)
|-|...+++++.|.||+... | +.+.
T Consensus 246 ------------------------gms~~mrK~~ld~~ggi~~f----------------------------~---~yLa 270 (431)
T KOG2547|consen 246 ------------------------GMSSMMRKEALDECGGISAF----------------------------G---GYLA 270 (431)
T ss_pred ------------------------cHHHHHHHHHHHHhccHHHH----------------------------H---HHHH
Confidence 55677888899999997642 2 3799
Q ss_pred chHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecc
Q 045222 748 KDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWAL 793 (1049)
Q Consensus 748 EDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~ 793 (1049)
||+-.+=.+..+||++.+.+-+.. --.+-.+...+..|-.||..
T Consensus 271 edyFaaksllSRG~ksaist~pal--QnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 271 EDYFAAKSLLSRGWKSAISTHPAL--QNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred HHHHHHHHHHhhhhhhhhcccchh--hhhhhhHHHHHHHHHHHhhh
Confidence 999999999999999999974443 56666888999999999963
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.58 E-value=3e-05 Score=86.12 Aligned_cols=49 Identities=29% Similarity=0.894 Sum_probs=45.7
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.|..|-+++.+++. -|.+| -|||.|||.||.--|.+-|+.||.|+..|.
T Consensus 16 ~cplcie~mditdk---nf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 16 YCPLCIEPMDITDK---NFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cCcccccccccccC---CcccC-CcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 69999999999875 69999 799999999999999999999999999994
No 76
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=96.99 E-value=0.0037 Score=65.88 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=38.4
Q ss_pred CcEEEEeccCCCCCCCCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 045222 482 PRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMD 544 (1049)
Q Consensus 482 P~lvYvsRekrpg~~h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~D 544 (1049)
+++.-..|.+.-| =.-|--+++. .+.|+|+++.|||-- -+|+++-+.+....+
T Consensus 63 d~i~l~pR~~klG-----LgtAy~hgl~----~a~g~fiviMDaDls-HhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 63 DNILLKPRTKKLG-----LGTAYIHGLK----HATGDFIVIMDADLS-HHPKFIPEFIRLQKE 115 (238)
T ss_pred CcEEEEeccCccc-----chHHHHhhhh----hccCCeEEEEeCccC-CCchhHHHHHHHhhc
Confidence 3477778876333 2334455666 689999999999998 789999888776554
No 77
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=96.78 E-value=0.012 Score=67.55 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=35.2
Q ss_pred eEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCh
Q 045222 354 VDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 399 (1049)
Q Consensus 354 VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~ 399 (1049)
+-|+|.+|| -| .-+.+||.|++++.+-.+...+||++||++.
T Consensus 2 ~PVlv~ayN---Rp-~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 2 IPVLVIACN---RP-DYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred cCEEEEecC---CH-HHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 358899998 54 7999999999998744567889999999875
No 78
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.49 E-value=0.016 Score=65.41 Aligned_cols=60 Identities=22% Similarity=0.466 Sum_probs=49.2
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccccCCcc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRLKGSAR 97 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kgspr 97 (1049)
..++|.+|-.+..++.+ =.+++. +||-..|+.|.+---+.|.+.||+|++..++.+=.|.
T Consensus 2 d~~~CP~Ck~~~y~np~-~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPS-LKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCCCcCCCCCccCcc-cccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 45799999999988887 445666 9999999999987667888999999999987643333
No 79
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.54 E-value=0.027 Score=48.43 Aligned_cols=45 Identities=42% Similarity=0.930 Sum_probs=35.4
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCC--Ccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQ--CKTRF 89 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPq--Ckt~Y 89 (1049)
+.+|++||+.+-. |+..|.|++|+=|.=|+||+++ +.|-- |++.+
T Consensus 5 ~~~C~~Cg~~~~~----~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKD----GDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccC----CCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 4589999999843 4469999999999999999865 34544 66665
No 80
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=93.91 E-value=0.7 Score=58.44 Aligned_cols=101 Identities=23% Similarity=0.293 Sum_probs=64.4
Q ss_pred HhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCcEEEEecC
Q 045222 689 KKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEVGWIYGSVTKDMLTGLIMHCHGWRSIYCIP 768 (1049)
Q Consensus 689 ~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrSvY~~~ 768 (1049)
-+||.-.+|=+--...-||++.. .. .-.++||+..|+....||-++.|+ +
T Consensus 382 lHYGHPD~~n~~f~~TRGGvSKA----------sk-------------------~lhLsEDIfaG~n~~lRGG~i~h~-e 431 (817)
T PF02364_consen 382 LHYGHPDVFNRIFMTTRGGVSKA----------SK-------------------GLHLSEDIFAGMNATLRGGRIKHC-E 431 (817)
T ss_pred ccCCCchhhhhhheeccCccchH----------hh-------------------cccccHHHHHHHHHHhcCCceeeh-h
Confidence 35666666655445677887652 11 137999999999999999999998 3
Q ss_pred CCCccccCCCc-CHHHHHhhhheecccchhhhhhccCccccccCCCCChhhhHhHHh
Q 045222 769 DRPAFKGPAPI-NLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLERLSYIN 824 (1049)
Q Consensus 769 ~~~Af~GlaP~-tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QRL~Yl~ 824 (1049)
-.+ .|-.-+ .|.+-+.=-..=+.|+=|..+||.--.+ +.+|.+.+=+++..
T Consensus 432 y~q--cGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yrL---g~~ld~~R~LSfyy 483 (817)
T PF02364_consen 432 YIQ--CGKGRDVGFNSILNFETKIASGMGEQMLSREYYRL---GTRLDFFRFLSFYY 483 (817)
T ss_pred hhh--cccccccCchhhhhhHhHhcCCccchhhhHHHHHh---hccCCHHHHHHHHh
Confidence 333 243222 2333333344568899999888853222 56788776664443
No 81
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.3 Score=56.58 Aligned_cols=133 Identities=23% Similarity=0.252 Sum_probs=86.8
Q ss_pred CCCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhh
Q 045222 347 QPSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQK 426 (1049)
Q Consensus 347 ~~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k 426 (1049)
-+++||+++|+|.-+| |--..+++||.|++.-.=|+---+|+++||-+..
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdK--------------------------- 199 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDK--------------------------- 199 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccCCcc---------------------------
Confidence 3578999999999999 9999999999999866533333467788886652
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHH
Q 045222 427 IDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNA 506 (1049)
Q Consensus 427 ~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~ 506 (1049)
..+|...+|.-.+.| | +|-|-|.+| ..|-+|+
T Consensus 200 ----------------ehLkekLDeYv~~fn-----------G--------------lVkV~Rne~-------REGLI~a 231 (603)
T KOG3737|consen 200 ----------------EHLKEKLDEYVKLFN-----------G--------------LVKVFRNER-------REGLIQA 231 (603)
T ss_pred ----------------HHHHHHHHHHHHHhc-----------C--------------EEEEEecch-------hhhhhhh
Confidence 123333334322222 2 677777442 3455554
Q ss_pred HHHhccCCCCCCEEEEecCCCCCChHHHHHHHH-HhhcCCCCCceeEEEecCccccCCCCc
Q 045222 507 LVRVSAVLTNSPYLLNLDCDHYINNSKALREAM-CFMMDPLLGKRVCYVQFPRRFDGINQD 566 (1049)
Q Consensus 507 ~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m-~ff~Dp~~g~~v~~VQ~PQ~F~nid~~ 566 (1049)
-- .-|..+.|++++.|||-.-+ |-+.|--++ |...|. .|+-|- -.++||.+
T Consensus 232 RS-iGA~~atGeV~ifLDAHCEV-ntNWlpPLlAPI~rdR----tvmTVP---~IDgId~n 283 (603)
T KOG3737|consen 232 RS-IGAQKATGEVLIFLDAHCEV-NTNWLPPLLAPISRDR----TVMTVP---LIDGIDGN 283 (603)
T ss_pred hc-cchhhccccEEEEEecceee-ecccccccccccccCc----eEEEEe---eeeeecCC
Confidence 21 12345789999999999886 556776655 556665 666553 45677765
No 82
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=0.18 Score=61.75 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=41.9
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCh
Q 045222 348 PSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 399 (1049)
Q Consensus 348 ~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~ 399 (1049)
...+|++.|+|+-+| |...++.+||-|++..-=|.---+|+|+||.+..
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999999887755545689999999874
No 83
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=90.97 E-value=1 Score=50.69 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHhccCCCCCCEEEEecCCCC--CChHHHHHHHHHhhc
Q 045222 497 NHKKAGAMNALVRVSAVLTNSPYLLNLDCDHY--INNSKALREAMCFMM 543 (1049)
Q Consensus 497 h~~KAGALN~~lrvSav~tng~~Il~lDaD~~--~~~p~~Lr~~m~ff~ 543 (1049)
..+|.||.--++- .+.|+++++.|||-- +++-+.|.++|.=..
T Consensus 142 nrgKGgAvR~g~l----~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~ 186 (323)
T KOG2977|consen 142 NRGKGGAVRKGML----SSRGQKILFADADGATKFADLEKLEKALNDKA 186 (323)
T ss_pred cCCCCcceehhhH----hccCceEEEEcCCCCccCCCHHHHHHHHHhhc
Confidence 4579999887665 479999999999963 467788888876433
No 84
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=1.4 Score=51.65 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=42.7
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 399 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~ 399 (1049)
.++|+-+|+|+-+| |.-..+-+||.|+|+-.=++=-.+++++||++.|
T Consensus 121 ~dlp~TsviITfHN---EARS~LLRTv~SvlnrsP~~li~EiILVDD~S~D 168 (559)
T KOG3738|consen 121 VDLPPTSVIITFHN---EARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQD 168 (559)
T ss_pred cCCCCceEEEEecc---HHHHHHHHHHHHHHcCChHHhhheeEEecCCCCC
Confidence 57999999999999 9999999999999998755545689999999987
No 85
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=88.51 E-value=0.51 Score=36.70 Aligned_cols=44 Identities=27% Similarity=0.742 Sum_probs=32.7
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTR 88 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~ 88 (1049)
.|.||.++. +.. + ....|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~--~~~----~-~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF--REP----V-VLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh--hCc----e-EecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488999987 222 2 2234899999999976666678889999975
No 86
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.98 E-value=0.37 Score=48.56 Aligned_cols=52 Identities=35% Similarity=0.814 Sum_probs=37.8
Q ss_pred cccCCcCCCCcCCCCCCCceeccCC-CCCccchhhHHHHHh--hcCCCCCCCcccccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNE-CAFPICRTCYEYERR--EGNQVCPQCKTRFRRLK 93 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~e-C~FpvCRpCYeyerk--eg~q~CPqCkt~Ykr~k 93 (1049)
--|.||.|.= .++ -|.-=|| |||.||--||--=.| .-.-+||-|||-||..+
T Consensus 81 YeCnIC~etS-~ee----~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETS-AEE----RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCccccc-chh----hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4699998751 222 3554444 599999999975555 55689999999998653
No 87
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.26 E-value=0.54 Score=53.67 Aligned_cols=52 Identities=31% Similarity=0.855 Sum_probs=44.6
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
...|.||+++.-.+.. .|++| -|+|.+|-+|.. -..+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~~~~d~---~~lP~-~~~~~~~l~~~~-t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDS---NFLPC-PCGFRLCLFCHK-TISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCccccccc---ccccc-cccccchhhhhh-cccccCCCCCccCCccccC
Confidence 4689999999755554 79999 799999999996 5679999999999999764
No 88
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.91 E-value=0.71 Score=51.86 Aligned_cols=53 Identities=30% Similarity=0.604 Sum_probs=47.3
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
+-|.+|--++-++.+ ++.--|+|+.+.|-.|..---.-|...||.|.+.-...
T Consensus 1 ~~Cp~CKt~~Y~np~---lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD---LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc---ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 469999999999998 99999999999999999766778899999999988754
No 89
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=84.69 E-value=1.2 Score=38.07 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=34.0
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
+|.||++-+. | +.+. .||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~~---~---Pv~~--~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMK---D---PVIL--PSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCC---C---CEEC--CCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 7999999741 2 4333 68999999999866666 689999998874
No 90
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=83.12 E-value=3.5 Score=47.99 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=30.2
Q ss_pred CCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh
Q 045222 497 NHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM 542 (1049)
Q Consensus 497 h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff 542 (1049)
.++|+-.|=-++-... ....+||-++|||.|+ |.++.+-+--|
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyi--PGaV~EYvk~y 184 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYI--PGAVNEYVKIY 184 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCC--CchHHHHHHHH
Confidence 4678877765443222 4588999999999998 56777766433
No 91
>PHA02929 N1R/p28-like protein; Provisional
Probab=82.12 E-value=1.7 Score=48.06 Aligned_cols=56 Identities=23% Similarity=0.490 Sum_probs=40.1
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.....|.||.+.+.-++-....|..-..|+=.-|+.|.. +-.+.++.||-|++++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 446799999998754321011233444799999999996 55567899999999875
No 92
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=81.69 E-value=3.4 Score=38.17 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhh
Q 045222 366 EPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 401 (1049)
Q Consensus 366 Epp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~T 401 (1049)
|.+ .+...|..-+++.+- ++||.|||+++.|
T Consensus 3 e~~-~L~~wl~~~~~lG~d----~i~i~d~~s~D~t 33 (97)
T PF13704_consen 3 EAD-YLPEWLAHHLALGVD----HIYIYDDGSTDGT 33 (97)
T ss_pred hHH-HHHHHHHHHHHcCCC----EEEEEECCCCccH
Confidence 664 677888888888764 4899999999854
No 93
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=80.97 E-value=27 Score=39.59 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=41.5
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCC--hhhHHHhhhh
Q 045222 348 PSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAA--MLTFEALSET 408 (1049)
Q Consensus 348 ~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s--~~Tf~al~Ea 408 (1049)
..+-++|=|+.|--| +++ .+..=...+.+++||++++++-++-.-++ +.|.+.|.++
T Consensus 21 ~~~~e~VLILtplrn--a~~--~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~ 79 (269)
T PF03452_consen 21 ARNKESVLILTPLRN--AAS--FLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAA 79 (269)
T ss_pred cccCCeEEEEEecCC--chH--HHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHH
Confidence 356788999999988 454 58888889999999999998854444444 5565655543
No 94
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=79.46 E-value=4.5 Score=46.91 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh
Q 045222 497 NHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM 542 (1049)
Q Consensus 497 h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff 542 (1049)
.++|+-.|=-++-... ....+||-++|||.|+ |.++.+-+--|
T Consensus 141 R~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyi--PGaV~EYvk~y 183 (381)
T TIGR02460 141 RSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYF--PGAVNEYVKIY 183 (381)
T ss_pred ecCcchHHHHHHHHHH-HhCCceEeEeecccCC--CchHHHHHHHH
Confidence 4678877765443222 4589999999999997 56777766433
No 95
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=75.68 E-value=1.7 Score=35.12 Aligned_cols=43 Identities=26% Similarity=0.612 Sum_probs=31.7
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCK 86 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCk 86 (1049)
.|.||-+++..+ +..+... |+=-.|+.|..-=. ..++.||-|+
T Consensus 2 ~C~IC~~~~~~~----~~~~~l~-C~H~fh~~Ci~~~~-~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDG----EKVVKLP-CGHVFHRSCIKEWL-KRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTT----SCEEEET-TSEEEEHHHHHHHH-HHSSB-TTTH
T ss_pred CCcCCChhhcCC----CeEEEcc-CCCeeCHHHHHHHH-HhCCcCCccC
Confidence 599999998653 3466664 99999999996333 3368999996
No 96
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.32 E-value=3.1 Score=45.67 Aligned_cols=47 Identities=36% Similarity=0.832 Sum_probs=38.7
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHH---HhhcCCCCCCCccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYE---RREGNQVCPQCKTRFR 90 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeye---rkeg~q~CPqCkt~Yk 90 (1049)
+---|.||=|.. =|+.|-| ||---|-||. |- .....++||=||..-.
T Consensus 46 ~~FdCNICLd~a------kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 46 GFFDCNICLDLA------KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred Cceeeeeecccc------CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 334899998865 3488999 9999999998 66 5688899999998765
No 97
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=74.22 E-value=2.1 Score=33.29 Aligned_cols=26 Identities=35% Similarity=0.735 Sum_probs=19.6
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCcc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPI 66 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~Fpv 66 (1049)
+|.-||.++.+... .-+-|.+||+.|
T Consensus 2 ~C~~Cg~~~~~~~~---~~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKPG---DPIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BSTS---STSSBSSSS-SE
T ss_pred CCCcCCCeeEcCCC---CcEECCcCCCeE
Confidence 68999999997765 348999999875
No 98
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=74.11 E-value=1.4 Score=55.08 Aligned_cols=46 Identities=24% Similarity=0.579 Sum_probs=29.5
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCc----cchhhHHHHHhhcCCCCCCCccccc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFP----ICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~Fp----vCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
+|.-||-++-- |.-| |.+||-+ .|.-|- .+...|..-||+|+++-.
T Consensus 3 ~Cp~Cg~~n~~----~akF--C~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFENPN----NNRF--CQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcCCC----CCcc--ccccCCCCCCCcCCCCC-CCCCcccccccccCCccc
Confidence 56666666421 2222 6666555 366666 367788899999998865
No 99
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=73.63 E-value=3.7 Score=44.07 Aligned_cols=52 Identities=31% Similarity=0.677 Sum_probs=36.0
Q ss_pred cCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHH---------------hhcCCCCCCCccccc
Q 045222 31 LQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYER---------------REGNQVCPQCKTRFR 90 (1049)
Q Consensus 31 ~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyer---------------keg~q~CPqCkt~Yk 90 (1049)
+...+.-.|.||.|.+ .+ +.+. .|+--.|++|-+.-. +.+...||-||++..
T Consensus 13 ~~~~~~~~CpICld~~---~d---PVvT--~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 13 VDSGGDFDCNICLDQV---RD---PVVT--LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred ccCCCccCCccCCCcC---CC---cEEc--CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3444556999999975 23 4442 599999999996311 113468999999885
No 100
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=72.77 E-value=1.5 Score=38.07 Aligned_cols=47 Identities=34% Similarity=0.670 Sum_probs=34.8
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
.-|.|=.||..-... ++. -||=-||+-|+.-||-.| ||=|.||+...
T Consensus 6 ~~~~~~~~~~~~~~~-----~~~---pCgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKG-----TVL---PCGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEcccccccc-----ccc---cccceeeccccChhhccC---CCCCCCcccCC
Confidence 346777787762221 233 369999999999999887 99999999764
No 101
>PHA02862 5L protein; Provisional
Probab=71.85 E-value=2.9 Score=42.96 Aligned_cols=49 Identities=22% Similarity=0.510 Sum_probs=32.8
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCC---CCccchhhHHHH-HhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNEC---AFPICRTCYEYE-RREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC---~FpvCRpCYeye-rkeg~q~CPqCkt~Ykr 91 (1049)
+.+|.||-++- +|..-+| .| -==|=+.|..-= ...++..|+|||++|.-
T Consensus 2 ~diCWIC~~~~------~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVC------DERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcC------CCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 46899998872 3345778 45 222446676422 44778999999999963
No 102
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=71.44 E-value=3.4 Score=46.99 Aligned_cols=40 Identities=38% Similarity=0.836 Sum_probs=31.3
Q ss_pred cCccCCcccCC--cCCCCcCCCCCCCceeccCC-CCCccchhhHH
Q 045222 31 LQQLGGQKCHI--CGDDVGLPVDGGDPFVACNE-CAFPICRTCYE 72 (1049)
Q Consensus 31 ~~~~~~~~Cqi--Cgd~vg~~~~~G~~FvaC~e-C~FpvCRpCYe 72 (1049)
+.+++|..|.- ||..+-...| +--|.|.. |+|--||.|.|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD--~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD--QRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC--CCcccCCCCchhHhHHHHHh
Confidence 55677889986 9988655544 23588987 99999999998
No 103
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=70.38 E-value=9 Score=41.56 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEE
Q 045222 497 NHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYV 554 (1049)
Q Consensus 497 h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~V 554 (1049)
...-|-+.|++++ .++++|++.+.=|..+.+++++.+++..| .|| ++|.|
T Consensus 39 ~~s~~~~yN~a~~----~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 39 AKSMAAAYNEAME----KAKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp -S-TTTHHHHHGG----G--SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred CcCHHHHHHHHHH----hCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 4567889999999 68999999999999998999999999988 888 56554
No 104
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=70.17 E-value=12 Score=47.15 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh
Q 045222 497 NHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM 542 (1049)
Q Consensus 497 h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff 542 (1049)
.++|+-.|=-++-... ....+||-++|||.|+ |.++.+-+-.|
T Consensus 146 r~gk~egm~~g~~la~-~~g~~yvgfidadny~--pg~v~ey~~~y 188 (694)
T PRK14502 146 RSGKAEGMILGIILTM-FSGRDYVGFIDTDNYI--PGAVWEYAKHF 188 (694)
T ss_pred ecCcchHHHHHHHHHH-hcCCceEeEeeccCCC--CchHHHHHHHH
Confidence 4678877775443322 5789999999999998 56777766433
No 105
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=66.28 E-value=3.5 Score=34.22 Aligned_cols=27 Identities=30% Similarity=0.748 Sum_probs=21.7
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCcc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPI 66 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~Fpv 66 (1049)
-+|.-||.++.+... .-+-|.+||+.|
T Consensus 3 Y~C~~Cg~~~~~~~~---~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK---DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC---CceECCCCCceE
Confidence 379999999888744 348899999876
No 106
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=65.00 E-value=45 Score=39.20 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=26.6
Q ss_pred CChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHH
Q 045222 498 HKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMC 540 (1049)
Q Consensus 498 ~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ 540 (1049)
++|+-.|=-++-+.. ....+||-++|||.|+ |.++.+-+-
T Consensus 142 ~GKgEGMiiGillAk-~~g~~YVGFvDADNyi--PGaV~EYvk 181 (381)
T PF09488_consen 142 NGKGEGMIIGILLAK-APGKRYVGFVDADNYI--PGAVNEYVK 181 (381)
T ss_dssp SSHHHHHHHHHHHHH-HTT-SEEEE--TTBS---HHHHHHHHH
T ss_pred cCchHHHHHHHHHHH-hcCCceEeEeeccCCC--cchHHHHHH
Confidence 578888876554333 4789999999999996 778877553
No 107
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=63.91 E-value=7.8 Score=28.73 Aligned_cols=39 Identities=38% Similarity=1.000 Sum_probs=27.5
Q ss_pred cCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCC
Q 045222 39 CHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQC 85 (1049)
Q Consensus 39 CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqC 85 (1049)
|.||.+.. .+ +.+. .|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~~---~~---~~~~--~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KD---PVVL--PCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CC---cEEe--cCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78898881 11 2222 4888899999975555577889987
No 108
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=63.38 E-value=1 Score=44.43 Aligned_cols=49 Identities=27% Similarity=0.765 Sum_probs=35.5
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCC
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQC 85 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqC 85 (1049)
.+...|.+|+...|+-.+ .-..|..|...||+.|-.|-.+++.=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~---~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFN---RGRVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTST---TCEEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCC---CCCcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 366799999999888755 3489999999999999987444444455544
No 109
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=63.16 E-value=7.5 Score=32.30 Aligned_cols=45 Identities=24% Similarity=0.658 Sum_probs=31.4
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCc-cchhhHHHHHhhcCCCCCCCcccccc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFP-ICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~Fp-vCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.|.||.+.. .+ -.+. .|+=- +|..|++--.+ ....||-|+++.++
T Consensus 4 ~C~iC~~~~---~~--~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 4 ECPICFENP---RD--VVLL---PCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp B-TTTSSSB---SS--EEEE---TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCccCCccC---Cc--eEEe---CCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 699999973 12 1344 46777 99999974444 77999999998753
No 110
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=62.68 E-value=7.1 Score=30.86 Aligned_cols=39 Identities=38% Similarity=0.956 Sum_probs=27.1
Q ss_pred cCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCC
Q 045222 39 CHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQC 85 (1049)
Q Consensus 39 CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqC 85 (1049)
|.||-|.. -++++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~------~~~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL------RDPVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-------SSEEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcc------cCcCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 78887764 2243333 69999999999755555 7999987
No 111
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=62.05 E-value=3.2 Score=47.64 Aligned_cols=30 Identities=23% Similarity=0.840 Sum_probs=25.6
Q ss_pred CCccchhhHHHHHhhcC--CCCCCCccccccc
Q 045222 63 AFPICRTCYEYERREGN--QVCPQCKTRFRRL 92 (1049)
Q Consensus 63 ~FpvCRpCYeyerkeg~--q~CPqCkt~Ykr~ 92 (1049)
+|.|||.|+.--|-+-+ +.||-|.++|+..
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 58899999987777666 9999999999844
No 112
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=61.37 E-value=1.4 Score=39.40 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=21.4
Q ss_pred hhhHHHHHhhcCCCCCCCcccccccc
Q 045222 68 RTCYEYERREGNQVCPQCKTRFRRLK 93 (1049)
Q Consensus 68 RpCYeyerkeg~q~CPqCkt~Ykr~k 93 (1049)
+-|++++..||.=.||+|+..|.-.+
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~d 67 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIRD 67 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEET
T ss_pred hhhhcccccCCEEEcCCCCCEEeCCC
Confidence 45777889999999999999996443
No 113
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=60.32 E-value=28 Score=37.46 Aligned_cols=64 Identities=14% Similarity=0.323 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh--hHHHHHHHHHHHHHHHHHHhhhccC-CCccch
Q 045222 946 LLIPPTTLLIINLVGMVAGVSNAINNGHESWGL--LFGKLFFALWVIIHLFPFLKGLIGR-HNRIST 1009 (1049)
Q Consensus 946 l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~~--l~g~l~~~~Wvi~~l~Pf~~gL~gR-~~~~P~ 1009 (1049)
+++-=..|+++.+++++.|+.-.++...+-.|- +....+..+++++.+|=|+--+.|- ..|.++
T Consensus 95 lm~lDssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~ 161 (226)
T COG4858 95 LMWLDSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGT 161 (226)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCch
Confidence 445556788889999999998888765544442 4444567788888888888777663 347777
No 114
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=60.10 E-value=6 Score=33.83 Aligned_cols=28 Identities=36% Similarity=0.928 Sum_probs=19.3
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHH
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYE 72 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYe 72 (1049)
.|.|||+++|+... +.= +=+| ||..|++
T Consensus 1 ~C~iCg~kigl~~~-----~k~-~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR-----FKI-KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc-----eec-cCcc-chHHHHH
Confidence 59999999999653 111 1234 8888886
No 115
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=59.87 E-value=2.3e+02 Score=38.87 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=50.6
Q ss_pred cccchHHHHHHHHHCCcEEEEec-----CCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhhh
Q 045222 745 SVTKDMLTGLIMHCHGWRSIYCI-----PDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLER 819 (1049)
Q Consensus 745 svTEDi~Tg~rLh~rGWrSvY~~-----~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QR 819 (1049)
.+.||+..|+....||=++.+|. .-+. .|+..++.=+ ..=|.|+=|..+||. .|-.+.++.+-.=
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~EYiQvGKGRD--vGlnqI~~Fe-----aKia~G~GEQ~LSRd---~YrLG~~ldffRm 1242 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHHEYIQVGKGRD--VGLNQISNFE-----AKIANGNGEQTLSRD---YYRLGTQLDFFRM 1242 (1679)
T ss_pred ccchHhhhhhhHHhhCCCcccceeeecccccc--cCcchhhhhh-----hhhcCCCcchhhhHH---HHHhcccccHHHH
Confidence 78999999999999999888873 1123 3454443322 234889998888875 2223566777655
Q ss_pred Hh-HHhhhhhhhhHHH
Q 045222 820 LS-YINACLYPFTSIP 834 (1049)
Q Consensus 820 L~-Yl~s~ly~l~sl~ 834 (1049)
|+ |+.+.-+++.++.
T Consensus 1243 LSfyftt~GF~~n~m~ 1258 (1679)
T KOG0916|consen 1243 LSFYFTTVGFYFNNMF 1258 (1679)
T ss_pred HHHHhccccHHHHhHH
Confidence 53 4444445555544
No 116
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=58.50 E-value=3.2 Score=47.22 Aligned_cols=36 Identities=33% Similarity=0.820 Sum_probs=27.4
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCC-CCccchhhHHHHHhhc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNEC-AFPICRTCYEYERREG 78 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC-~FpvCRpCYeyerkeg 78 (1049)
-|.+|--++ |.. .|+-|+|| +|-.|-||+.--...|
T Consensus 7 hCdvC~~d~--T~~---~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDM--TDL---TFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhh--hcc---eeeeeecccccceehhhhhcccccc
Confidence 588888764 433 79999999 9999999996333333
No 117
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=58.03 E-value=9 Score=40.07 Aligned_cols=51 Identities=22% Similarity=0.438 Sum_probs=34.6
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCC---ccchhhHHHHH-hhcCCCCCCCccccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAF---PICRTCYEYER-REGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~F---pvCRpCYeyer-keg~q~CPqCkt~Ykr~ 92 (1049)
.+..|.||-++- ++..-+| .|.= -|=+.|.+.=. ..++..|++|+++|.-.
T Consensus 7 ~~~~CRIC~~~~------~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEY------DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCC------CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 456999997772 2234588 5632 34577886443 35679999999999743
No 118
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=57.46 E-value=6.7 Score=44.68 Aligned_cols=41 Identities=37% Similarity=1.057 Sum_probs=33.7
Q ss_pred CCceeccCCCCCcc--------ch--hhHHHHHhhcCCCCCCCcccccccc
Q 045222 53 GDPFVACNECAFPI--------CR--TCYEYERREGNQVCPQCKTRFRRLK 93 (1049)
Q Consensus 53 G~~FvaC~eC~Fpv--------CR--pCYeyerkeg~q~CPqCkt~Ykr~k 93 (1049)
|+-.--|.-|+||| |+ .|||-.|.+..+.||.|-.|-.|..
T Consensus 87 ~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 87 GPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred CcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHH
Confidence 55456688899987 53 7999889999999999999988764
No 119
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=56.57 E-value=8.2 Score=30.44 Aligned_cols=40 Identities=33% Similarity=0.756 Sum_probs=30.0
Q ss_pred cCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHh-hcCCCCCCC
Q 045222 39 CHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERR-EGNQVCPQC 85 (1049)
Q Consensus 39 CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerk-eg~q~CPqC 85 (1049)
|.||.+...... --.+|+=..|+.|..--.+ .+...||.|
T Consensus 1 C~iC~~~~~~~~-------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV-------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE-------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC-------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 788988753322 2347899999999986655 788889988
No 120
>PRK00420 hypothetical protein; Validated
Probab=56.19 E-value=4.7 Score=39.91 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=22.7
Q ss_pred ccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 58 ACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 58 aC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
.|..|++|.= +-++|.-.||.|++.+.-.
T Consensus 25 ~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 25 HCPVCGLPLF------ELKDGEVVCPVHGKVYIVK 53 (112)
T ss_pred CCCCCCCcce------ecCCCceECCCCCCeeeec
Confidence 4888888873 3388889999999988643
No 121
>PHA02926 zinc finger-like protein; Provisional
Probab=53.48 E-value=16 Score=40.15 Aligned_cols=63 Identities=30% Similarity=0.526 Sum_probs=42.0
Q ss_pred ccCCcccCCcCCCCcCCCCCCC-ceeccCCCCCccchhhHHHHHhh-----cCCCCCCCccccccccCC
Q 045222 33 QLGGQKCHICGDDVGLPVDGGD-PFVACNECAFPICRTCYEYERRE-----GNQVCPQCKTRFRRLKGS 95 (1049)
Q Consensus 33 ~~~~~~CqiCgd~vg~~~~~G~-~FvaC~eC~FpvCRpCYeyerke-----g~q~CPqCkt~Ykr~kgs 95 (1049)
.+....|.||-|.+--....++ -|--=..|+=.-|..|..--|+. +...||.|+++++...=|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 3455799999999744311011 23333458999999999755553 246799999999865433
No 122
>PRK12495 hypothetical protein; Provisional
Probab=49.41 E-value=8.7 Score=42.01 Aligned_cols=28 Identities=36% Similarity=0.993 Sum_probs=21.3
Q ss_pred eccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 57 VACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 57 vaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 43 ~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 43 AHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 34666666664 45899999999999975
No 123
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=47.75 E-value=11 Score=44.87 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=21.5
Q ss_pred ceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 55 PFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 55 ~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
.-++|++|+..+ . ..+...||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999966 1 23446899999987544
No 124
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.66 E-value=15 Score=43.66 Aligned_cols=53 Identities=26% Similarity=0.635 Sum_probs=36.8
Q ss_pred CccCccCC-cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 29 RPLQQLGG-QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 29 ~~~~~~~~-~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
+.+..+.. ..|.||.+.. + + +.+ -.|+--.|..|...-.. ....||.|++.+.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~--~-~---Pvi--tpCgH~FCs~CI~~~l~-~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFF--D-V---PVL--TSCSHTFCSLCIRRCLS-NQPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccccCCCcCchhh--h-C---ccC--CCCCCchhHHHHHHHHh-CCCCCCCCCCccc
Confidence 33455444 4999999865 1 2 333 35999999999974433 3468999999875
No 125
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.33 E-value=2.7 Score=48.51 Aligned_cols=46 Identities=28% Similarity=0.660 Sum_probs=40.0
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
+|.||-+=+-.|-. -.||+-..|+.|.--.-+.|+.-||-|++.-.
T Consensus 45 ~c~icl~llk~tmt-------tkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 45 ICPICLSLLKKTMT-------TKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred ccHHHHHHHHhhcc-------cHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 89999988766644 35899999999999999999999999998764
No 126
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=46.20 E-value=15 Score=32.46 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=24.0
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchh
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRT 69 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRp 69 (1049)
.+|+|..||.....+.. +..| -|..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~-~r~~-~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRS-GRVF-TCPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccc-cceE-EcCCCCCEECcH
Confidence 57899999999877444 4444 488898876554
No 127
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=45.21 E-value=13 Score=26.86 Aligned_cols=8 Identities=38% Similarity=1.298 Sum_probs=4.9
Q ss_pred cCCcCCCC
Q 045222 39 CHICGDDV 46 (1049)
Q Consensus 39 CqiCgd~v 46 (1049)
|.-||.+|
T Consensus 2 Cp~CG~~~ 9 (23)
T PF13240_consen 2 CPNCGAEI 9 (23)
T ss_pred CcccCCCC
Confidence 55666665
No 128
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=44.80 E-value=9.4 Score=33.69 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=22.1
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCcc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPI 66 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~Fpv 66 (1049)
--+|.-||.+-.+... .-+-|.||||.|
T Consensus 20 iYiCgdC~~en~lk~~---D~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLKRG---DVIRCRECGYRI 47 (62)
T ss_pred EEEeccccccccccCC---CcEehhhcchHH
Confidence 4589999998777654 467899999976
No 129
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=44.65 E-value=17 Score=30.52 Aligned_cols=30 Identities=33% Similarity=1.060 Sum_probs=25.0
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCC-CCccchhhHH
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNEC-AFPICRTCYE 72 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC-~FpvCRpCYe 72 (1049)
.|..|+.++. +...+.|.+| .|-+|-.||.
T Consensus 2 ~Cd~C~~~~~-----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT-----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC-----CCcEEECCCCCCcchhHHhhh
Confidence 5889998753 3367999999 9999999996
No 130
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=44.36 E-value=17 Score=43.45 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=22.1
Q ss_pred ceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 55 PFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 55 ~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
.-++|++|+..+ ..+...||+|++.-.|.
T Consensus 220 ~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 220 GLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred CCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 367899999964 23456899999988655
No 131
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG1813 Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription]
Probab=42.11 E-value=17 Score=38.31 Aligned_cols=35 Identities=20% Similarity=0.766 Sum_probs=23.5
Q ss_pred cCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhc
Q 045222 39 CHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREG 78 (1049)
Q Consensus 39 CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg 78 (1049)
|.|||-.+--.-. |.-.-=-.-||+.||.|.++..
T Consensus 6 CEiCG~~i~~~~~-----v~vegsel~VC~~Cak~G~~~~ 40 (165)
T COG1813 6 CELCGREIDKPIK-----VKVEGAELTVCDDCAKFGTAAK 40 (165)
T ss_pred eeccccccCCCee-----EEeecceeehhHHHHHhccCcc
Confidence 9999999763222 3333344679999998885543
No 133
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=41.98 E-value=27 Score=28.37 Aligned_cols=43 Identities=21% Similarity=0.604 Sum_probs=31.3
Q ss_pred cCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcc
Q 045222 39 CHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKT 87 (1049)
Q Consensus 39 CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt 87 (1049)
|.||-.+. +++ . .++.= .|+=-+|..|.+- .......||.|++
T Consensus 2 C~~C~~~~--~~~-~-~~~l~-~CgH~~C~~C~~~-~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEE-R-RPRLT-SCGHIFCEKCLKK-LKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCC-C-CeEEc-ccCCHHHHHHHHh-hcCCCCCCcCCCC
Confidence 88999988 332 2 23333 6899999999963 3467799999985
No 134
>PF04641 Rtf2: Rtf2 RING-finger
Probab=41.68 E-value=21 Score=39.95 Aligned_cols=53 Identities=23% Similarity=0.523 Sum_probs=40.0
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
...-+|.|++.+. ++.--||+=--||=-+|..|.+ |.+ ....||.|.++|.+.
T Consensus 111 ~~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alk-e~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALK-ELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHH-hhc-ccccccccCCccccC
Confidence 3445999999887 2123588888999888888886 555 456799999999743
No 135
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=40.29 E-value=13 Score=43.70 Aligned_cols=68 Identities=25% Similarity=0.594 Sum_probs=42.4
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhh-HHHHHhhcCCCCCCCcccc---cc--ccCCcccCCCCccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTC-YEYERREGNQVCPQCKTRF---RR--LKGSARVEGDEEEDDI 107 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpC-Yeyerkeg~q~CPqCkt~Y---kr--~kgsprv~gd~~~~~~ 107 (1049)
+--|..||+-+|+... ----.+| .--.=--| |||=-+.|.+.||.|+.-- +| .-|||-||.+-++-++
T Consensus 365 ~L~Cg~CGe~~Glk~e-~LqALpC---sHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~v 438 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNE-RLQALPC---SHIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRCV 438 (518)
T ss_pred hhhhhhhhhhhcCCcc-cccccch---hHHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccccccccc
Confidence 4589999999999754 1113444 22222223 5566789999999998322 22 2367888776555444
No 136
>PRK04023 DNA polymerase II large subunit; Validated
Probab=40.07 E-value=19 Score=46.92 Aligned_cols=45 Identities=24% Similarity=0.663 Sum_probs=32.2
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCc-----cchhhHHHHHh-hcCCCCCCCccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFP-----ICRTCYEYERR-EGNQVCPQCKTRFR 90 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~Fp-----vCRpCYeyerk-eg~q~CPqCkt~Yk 90 (1049)
.....|.-||-.. ....|.+||=. .|.-| ++ .+.-.||.|++.-.
T Consensus 624 Vg~RfCpsCG~~t--------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET--------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC--------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4556999999883 34679999853 67777 34 33467999998764
No 137
>PRK07220 DNA topoisomerase I; Validated
Probab=39.40 E-value=13 Score=47.57 Aligned_cols=49 Identities=24% Similarity=0.667 Sum_probs=32.3
Q ss_pred cccCCcCCCCcCC-CCCCCceeccCCCCCccchhhHHHHHh----hcCCCCCCCcc
Q 045222 37 QKCHICGDDVGLP-VDGGDPFVACNECAFPICRTCYEYERR----EGNQVCPQCKT 87 (1049)
Q Consensus 37 ~~CqiCgd~vg~~-~~~G~~FvaC~eC~FpvCRpCYeyerk----eg~q~CPqCkt 87 (1049)
..|..||.++-.. ...|..|..|. +||-|+..+...++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999775432 22155799995 67888866543321 13478999985
No 138
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=39.04 E-value=18 Score=29.86 Aligned_cols=27 Identities=41% Similarity=0.808 Sum_probs=16.2
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCcc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPI 66 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~Fpv 66 (1049)
.|+-||..+..+++ .. -+-|..||.++
T Consensus 5 ~C~~CG~~~~~~~~-~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEY-GT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCC-CC-ceECCCCCCeE
Confidence 57777777766655 22 34565565554
No 139
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=38.57 E-value=23 Score=44.69 Aligned_cols=60 Identities=28% Similarity=0.841 Sum_probs=41.4
Q ss_pred cCCcccCCcCCCCcCCCCCCC---ceeccCCCC--------------------CccchhhHH-HH----Hh--hcCCCCC
Q 045222 34 LGGQKCHICGDDVGLPVDGGD---PFVACNECA--------------------FPICRTCYE-YE----RR--EGNQVCP 83 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~---~FvaC~eC~--------------------FpvCRpCYe-ye----rk--eg~q~CP 83 (1049)
..-.+|.-|-.++ .|.++=- +|..|-.|| ||.|-.|-+ |+ |+ ----+||
T Consensus 99 pD~a~C~~Cl~Ei-~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 99 PDAATCEDCLEEI-FDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CchhhhHHHHHHh-cCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 3456899999987 3433122 699999994 999999975 32 33 2236999
Q ss_pred CCccccc--cccC
Q 045222 84 QCKTRFR--RLKG 94 (1049)
Q Consensus 84 qCkt~Yk--r~kg 94 (1049)
.|+-.|. +++|
T Consensus 178 ~CGP~~~l~~~~g 190 (750)
T COG0068 178 KCGPHLFLVNHDG 190 (750)
T ss_pred ccCCCeEEEcCCC
Confidence 9997554 5544
No 140
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=38.25 E-value=27 Score=28.84 Aligned_cols=30 Identities=30% Similarity=0.806 Sum_probs=24.4
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCC-CccchhhHHH
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECA-FPICRTCYEY 73 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~-FpvCRpCYey 73 (1049)
.|.+|+-++ . | ....|.+|. |-+|..||..
T Consensus 2 ~C~~C~~~i--~---g-~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLKPI--V---G-VRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCcCCCCCC--c---C-CEEECCCCCCCcCHHHHHCc
Confidence 589999854 2 4 578999996 9999999963
No 141
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.62 E-value=9.3 Score=29.60 Aligned_cols=18 Identities=33% Similarity=0.702 Sum_probs=11.3
Q ss_pred HHHhhcCCCCCCCccccc
Q 045222 73 YERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 73 yerkeg~q~CPqCkt~Yk 90 (1049)
|+-++....||.|+.+-.
T Consensus 11 y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 11 YDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred ECCCcCCCcCcCCCCcHH
Confidence 333336678888887543
No 142
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=37.46 E-value=34 Score=39.43 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=28.4
Q ss_pred CCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCceeEEE
Q 045222 514 LTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRVCYV 554 (1049)
Q Consensus 514 ~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v~~V 554 (1049)
.+..+||+++|+|++ |.+++-+....+...-....+.+||
T Consensus 125 ~a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~V 164 (317)
T PF13896_consen 125 GARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFV 164 (317)
T ss_pred hcCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEE
Confidence 478999999999999 7777766666655332234466666
No 143
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=35.84 E-value=19 Score=36.34 Aligned_cols=49 Identities=31% Similarity=0.697 Sum_probs=36.0
Q ss_pred cCCcccCCcCCCCcCC--CCCCCceeccCCCCCccchhhHHH---HHhhcCCCCCCCcc
Q 045222 34 LGGQKCHICGDDVGLP--VDGGDPFVACNECAFPICRTCYEY---ERREGNQVCPQCKT 87 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~--~~~G~~FvaC~eC~FpvCRpCYey---erkeg~q~CPqCkt 87 (1049)
..+++|+.||....+- .. | -|+.| =.||.|+- |.- +..+....||+|+.
T Consensus 15 ~~~~~Cp~Cg~~m~~~~~~~-g-~f~gC--s~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 15 KTGQICPKCGKNMVKKFGKY-G-IFLGC--SNYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred ccCccCCcCCCeeEEEEccC-C-eEEEe--CCCCCCCC-CcccccccccCceeCCCCCC
Confidence 4578999999996664 45 7 89999 47999996 221 12255589999997
No 144
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.48 E-value=32 Score=36.73 Aligned_cols=46 Identities=30% Similarity=0.735 Sum_probs=37.0
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRF 89 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Y 89 (1049)
-.|.||-|.+.-.+ -|+= +||---|+.|-+..+|.+ ..||-|+.+-
T Consensus 132 ~~CPiCl~~~sek~-----~vsT-kCGHvFC~~Cik~alk~~-~~CP~C~kkI 177 (187)
T KOG0320|consen 132 YKCPICLDSVSEKV-----PVST-KCGHVFCSQCIKDALKNT-NKCPTCRKKI 177 (187)
T ss_pred cCCCceecchhhcc-----cccc-ccchhHHHHHHHHHHHhC-CCCCCccccc
Confidence 58999999864432 2444 799999999999999998 7899999743
No 145
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.12 E-value=39 Score=29.74 Aligned_cols=47 Identities=32% Similarity=0.798 Sum_probs=35.0
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
-|..|+.++--+. .+-++-=.||-| |.+|-+-.. .++||.|+..+-+
T Consensus 7 nCE~C~~dLp~~s--~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS--PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC--CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999975554 246776689987 999997332 5799999977653
No 146
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=34.93 E-value=27 Score=29.28 Aligned_cols=30 Identities=23% Similarity=0.685 Sum_probs=23.5
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCC-CccchhhHHH
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECA-FPICRTCYEY 73 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~-FpvCRpCYey 73 (1049)
.|.+||-|+. + +..-|-.++ +-+|.+||+-
T Consensus 2 ~C~~Cg~D~t-~-----vryh~~~~~~~dLC~~CF~~ 32 (45)
T cd02336 2 HCFTCGNDCT-R-----VRYHNLKAKKYDLCPSCYQE 32 (45)
T ss_pred cccCCCCccC-c-----eEEEecCCCccccChHHHhC
Confidence 6999999984 3 346677776 9999999973
No 147
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=34.30 E-value=27 Score=39.45 Aligned_cols=61 Identities=23% Similarity=0.537 Sum_probs=40.7
Q ss_pred ccCCCccCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchh-----hHHHHHh---hc-----CCCCCCCcccccc
Q 045222 25 ESAARPLQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRT-----CYEYERR---EG-----NQVCPQCKTRFRR 91 (1049)
Q Consensus 25 ~~~~~~~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRp-----CYeyerk---eg-----~q~CPqCkt~Ykr 91 (1049)
++-+++-...-+..|.+|+++|. .. +.++|| |-+|-|+. |.--|-. .| .+.||-|++.+.-
T Consensus 171 Dal~~~~~~~~~~~celc~~ei~-e~---~~~~a~--c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w 244 (276)
T KOG3005|consen 171 DALPQPRTGALNVECELCEKEIL-ET---DWSRAT--CPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSW 244 (276)
T ss_pred hcccCccccccchhhHHHHHHhc-cc---cceecc--CCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeH
Confidence 33334444455679999999986 22 358888 99999974 6654322 12 2679999998863
No 148
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=34.22 E-value=22 Score=31.38 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=12.2
Q ss_pred hcCCCCCCCccccc------cccCCcccCCCCccccch
Q 045222 77 EGNQVCPQCKTRFR------RLKGSARVEGDEEEDDID 108 (1049)
Q Consensus 77 eg~q~CPqCkt~Yk------r~kgsprv~gd~~~~~~~ 108 (1049)
+++..-|=|-+|=| -..|+=||.|.+++++.+
T Consensus 16 ~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 16 PENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp SSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred CCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 44444455555444 356677888876544433
No 149
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=34.19 E-value=25 Score=26.51 Aligned_cols=28 Identities=32% Similarity=0.924 Sum_probs=12.0
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhh
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTC 70 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpC 70 (1049)
.|.+||..+.. +.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~~-----~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG-----GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S-------EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC-----CceEECccCCCccChhc
Confidence 59999998643 37888999999998877
No 150
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=33.97 E-value=46 Score=38.40 Aligned_cols=44 Identities=23% Similarity=0.527 Sum_probs=30.1
Q ss_pred CCcccCCcCCCC--c---C--CCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccc
Q 045222 35 GGQKCHICGDDV--G---L--PVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTR 88 (1049)
Q Consensus 35 ~~~~CqiCgd~v--g---~--~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~ 88 (1049)
+.+.|.+||..= + . +.+ |.=+.-|.-|+. |.+-.+-.||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~-G~RyL~CslC~t---------eW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKET-GLRYLSCSLCAT---------EWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCC-CceEEEcCCCCC---------cccccCccCCCCCCC
Confidence 345999999881 1 1 135 888999987764 455556778888763
No 151
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=33.82 E-value=16 Score=43.59 Aligned_cols=57 Identities=23% Similarity=0.591 Sum_probs=37.8
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCC-CccchhhHHHHHhhcCCCCCCCccccccccC--CcccCCC
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECA-FPICRTCYEYERREGNQVCPQCKTRFRRLKG--SARVEGD 101 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~-FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kg--sprv~gd 101 (1049)
-.|-.|..+|. |-.+|-|.||. |-+|-+|+.--..-|.+ ||.-+|.-.+. .|.+.+|
T Consensus 15 y~C~~C~~dit-----~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~~s~~i~~~~ 74 (438)
T KOG0457|consen 15 YNCDYCSLDIT-----GLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDTNSFPILDPS 74 (438)
T ss_pred CCCccHhHHhc-----cceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecCCCCCCCCCC
Confidence 48999999863 44789999998 99999999532223322 44566664432 4454444
No 152
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=32.92 E-value=21 Score=30.63 Aligned_cols=29 Identities=31% Similarity=0.612 Sum_probs=21.1
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCcc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPI 66 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~Fpv 66 (1049)
.-.|..||.++.++.. ..-+.|..|++.|
T Consensus 6 ~Y~C~~Cg~~~~~~~~--~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQE--TRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhhc--cCceeCCCCCcEE
Confidence 3479999999965432 2458899999865
No 153
>COG4818 Predicted membrane protein [Function unknown]
Probab=32.49 E-value=4e+02 Score=26.19 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=45.0
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCCCCeEeccCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcch
Q 045222 898 IGGISAHPVAVFQGLLKVLAGVDTDFTVTSKAGDVEAFSELYAFKWTTLLIPPTTLLIINLVGMVAGVSNAINNGHESWG 977 (1049)
Q Consensus 898 I~~~sa~LfAv~~aLlkvl~g~~~~F~VT~K~~~~~~~~~ly~f~wt~l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~ 977 (1049)
|.+..+++++.+.+++-.|--++.+|..=- . ... .+|.+.++++.++....-.+ |
T Consensus 5 iegaLCY~lgwitGllFlllEre~~FVrFH------A------mQS------~ltF~~l~~l~ill~~iP~I-------g 59 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKFVRFH------A------MQS------FLTFLGLWLLIILLAFIPYI-------G 59 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcceeeh------h------HHH------HHHHHHHHHHHHHHHHhhhh-------H
Confidence 345567888888888877665666552110 0 011 12223333333333222111 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccCCCccchh
Q 045222 978 LLFGKLFFALWVIIHLFPFLKGLIGRHNRISTI 1010 (1049)
Q Consensus 978 ~l~g~l~~~~Wvi~~l~Pf~~gL~gR~~~~P~~ 1010 (1049)
-+...++..+=.+.-+.+.+||--|-+.|.|.+
T Consensus 60 ~lls~~v~l~a~iLwlv~mykAyrGe~fKlPv~ 92 (105)
T COG4818 60 WLLSGLVGLAAFILWLVCMYKAYRGERFKLPVV 92 (105)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCCeecCcee
Confidence 133333333333444567899988888898863
No 154
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=32.28 E-value=2.4e+02 Score=32.35 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=46.8
Q ss_pred CCcEEEEeccCCCCCCCCChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCcee-EEEecCcc
Q 045222 481 LPRLVYVSREKRPGFNNHKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDPLLGKRV-CYVQFPRR 559 (1049)
Q Consensus 481 lP~lvYvsRekrpg~~h~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp~~g~~v-~~VQ~PQ~ 559 (1049)
+|++.|++-...-.+-..+|.. |++..-|-..-++.+|+.+|+|.+...-+|.+ .+..-.-.++...| |+.=-|-.
T Consensus 61 ~~~~~yl~~~s~~~F~s~~~c~--n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k-~l~~~~ikk~~tnI~a~~vlPV~ 137 (346)
T COG4092 61 MPRVLYLDFGSPEPFASETICA--NNGADYSHEKCESNLVLFLDVDCFGSSDNFAK-MLSIATIKKMRTNIDAPLVLPVY 137 (346)
T ss_pred ccceEEEecCCCccccchhhhh--hccchhhhccccccEEEEEeccccccHHHHHH-HHHHHHHHHHHhccCcceeeeee
Confidence 5778888753311121222222 33333222245689999999999964334444 33222111222345 66666766
Q ss_pred ccCCCCccccchhhhhhHhhh
Q 045222 560 FDGINQDDRFANRKTVFFDIN 580 (1049)
Q Consensus 560 F~nid~~D~yan~~~vFfdi~ 580 (1049)
|-|-.. +.+||++.
T Consensus 138 ~LNk~~-------~~v~f~~~ 151 (346)
T COG4092 138 HLNKAD-------TQVFFDVE 151 (346)
T ss_pred ecchhh-------hhHHHHHH
Confidence 666543 44566654
No 155
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=32.26 E-value=14 Score=32.55 Aligned_cols=10 Identities=50% Similarity=1.394 Sum_probs=5.2
Q ss_pred CCCCCccccc
Q 045222 81 VCPQCKTRFR 90 (1049)
Q Consensus 81 ~CPqCkt~Yk 90 (1049)
+||+||.-|+
T Consensus 46 VCP~Ck~iye 55 (58)
T PF11238_consen 46 VCPECKEIYE 55 (58)
T ss_pred CCcCHHHHHH
Confidence 4455555554
No 156
>PRK14973 DNA topoisomerase I; Provisional
Probab=31.94 E-value=26 Score=46.00 Aligned_cols=49 Identities=24% Similarity=0.712 Sum_probs=31.9
Q ss_pred cccCCcCCCCcCC-CCCCCceeccCCCCCccchhhHHHHHh-hc-----CCCCCCCccc
Q 045222 37 QKCHICGDDVGLP-VDGGDPFVACNECAFPICRTCYEYERR-EG-----NQVCPQCKTR 88 (1049)
Q Consensus 37 ~~CqiCgd~vg~~-~~~G~~FvaC~eC~FpvCRpCYeyerk-eg-----~q~CPqCkt~ 88 (1049)
..|..||.++-+. ...|. |..|. +||-|+..+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 5799999876432 22144 99996 66888866544222 11 3689999973
No 157
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=30.65 E-value=26 Score=43.59 Aligned_cols=44 Identities=30% Similarity=0.543 Sum_probs=26.3
Q ss_pred ccCCcccCCcCCCCcCCCCCCCc-----------eec-----cCCCCCccchhhHHHHHhhc
Q 045222 33 QLGGQKCHICGDDVGLPVDGGDP-----------FVA-----CNECAFPICRTCYEYERREG 78 (1049)
Q Consensus 33 ~~~~~~CqiCgd~vg~~~~~G~~-----------Fva-----C~eC~FpvCRpCYeyerkeg 78 (1049)
....++|.|||.+-.++.+ -.. |++ =.-=.||||..|+. ...+|
T Consensus 195 ~~~~g~C~iCg~~~~V~~~-~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~-~l~~G 254 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGD-VSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCAL-KLEEG 254 (593)
T ss_pred cCCCCeEEeCCCCCeeccc-chhhheeeecCCcccccccccccccccChhhHHHHH-HHHHH
Confidence 3455689999998444433 111 222 00237899999996 44555
No 158
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=30.60 E-value=35 Score=29.76 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=11.3
Q ss_pred ccCCcCCCCcCCCC
Q 045222 38 KCHICGDDVGLPVD 51 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~ 51 (1049)
.|..||.+|.++.+
T Consensus 4 ~CP~CG~~iev~~~ 17 (54)
T TIGR01206 4 ECPDCGAEIELENP 17 (54)
T ss_pred CCCCCCCEEecCCC
Confidence 79999999888654
No 159
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=30.56 E-value=37 Score=43.44 Aligned_cols=57 Identities=30% Similarity=0.807 Sum_probs=41.6
Q ss_pred cCCcccCCcCCCCcCCCCC---CCceeccCCCC--------------------CccchhhHH-HH----Hhh--cCCCCC
Q 045222 34 LGGQKCHICGDDVGLPVDG---GDPFVACNECA--------------------FPICRTCYE-YE----RRE--GNQVCP 83 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~---G~~FvaC~eC~--------------------FpvCRpCYe-ye----rke--g~q~CP 83 (1049)
..-.+|.-|-+++ .+.++ +=+|.-|..|| |++|..|.. |+ |+- ---+||
T Consensus 66 pD~a~C~~Cl~E~-~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~ 144 (711)
T TIGR00143 66 ADVATCSDCLEEM-LDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACP 144 (711)
T ss_pred CchhhHHHHHHHh-cCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCC
Confidence 3556999999998 44332 55899999994 899999985 21 222 225899
Q ss_pred CCcccccc
Q 045222 84 QCKTRFRR 91 (1049)
Q Consensus 84 qCkt~Ykr 91 (1049)
.|+=|+.-
T Consensus 145 ~Cgp~l~l 152 (711)
T TIGR00143 145 RCGPQLNF 152 (711)
T ss_pred CCCcEEEE
Confidence 99988864
No 160
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.34 E-value=21 Score=43.59 Aligned_cols=43 Identities=23% Similarity=0.591 Sum_probs=18.3
Q ss_pred ceeccCCCCCc-cchhhH---HHHHhhcCCCCCCCccccccccCCcc
Q 045222 55 PFVACNECAFP-ICRTCY---EYERREGNQVCPQCKTRFRRLKGSAR 97 (1049)
Q Consensus 55 ~FvaC~eC~Fp-vCRpCY---eyerkeg~q~CPqCkt~Ykr~kgspr 97 (1049)
+++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.
T Consensus 212 ~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~ 258 (505)
T TIGR00595 212 KNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQ 258 (505)
T ss_pred CeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCC
Confidence 35555555543 244442 22233333444444444443333443
No 161
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=30.34 E-value=31 Score=40.71 Aligned_cols=46 Identities=26% Similarity=0.783 Sum_probs=33.1
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHH-hhcCCCCCCCccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYER-REGNQVCPQCKTRFR 90 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyer-keg~q~CPqCkt~Yk 90 (1049)
+.|.||.|+ +.| |-=.-||--.|-.|..-=. .++.|-||=|+-.-|
T Consensus 370 eLCKICaen---dKd-----vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAEN---DKD-----VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhcc---CCC-----cccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 679999876 222 3344689999999986433 455799999987654
No 162
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=30.06 E-value=18 Score=35.62 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=18.2
Q ss_pred eeccCCCCCccchhhHHHHHhhcCCCCCCCcccc
Q 045222 56 FVACNECAFPICRTCYEYERREGNQVCPQCKTRF 89 (1049)
Q Consensus 56 FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Y 89 (1049)
-+-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 46687777 4455555556699999653
No 163
>PRK11827 hypothetical protein; Provisional
Probab=29.99 E-value=34 Score=30.50 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=12.2
Q ss_pred CCCCCCCccccccccCCc
Q 045222 79 NQVCPQCKTRFRRLKGSA 96 (1049)
Q Consensus 79 ~q~CPqCkt~Ykr~kgsp 96 (1049)
.=+|..|+-.|--..|=|
T Consensus 26 ~Lic~~~~laYPI~dgIP 43 (60)
T PRK11827 26 ELICKLDNLAFPLRDGIP 43 (60)
T ss_pred eEECCccCeeccccCCcc
Confidence 356888888887554544
No 164
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=29.68 E-value=30 Score=30.71 Aligned_cols=31 Identities=23% Similarity=0.702 Sum_probs=23.7
Q ss_pred cCCcccCCcCC--CCcC-CCCCCCceeccCCCCCc
Q 045222 34 LGGQKCHICGD--DVGL-PVDGGDPFVACNECAFP 65 (1049)
Q Consensus 34 ~~~~~CqiCgd--~vg~-~~~~G~~FvaC~eC~Fp 65 (1049)
..|-+|.-|+. .|.+ .++ |...+-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~-~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKEN-NIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeC-CceEEEeccCCCc
Confidence 45779999984 4444 456 8889999999985
No 165
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=29.58 E-value=3e+02 Score=32.49 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=28.5
Q ss_pred HHhcCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCC-CccchhHHHHHHHHHH
Q 045222 968 AINNGHESWGLLFGKLFFALWVIIHLFPFLKGLIGRH-NRISTIVVVWSILLAS 1020 (1049)
Q Consensus 968 ~~~~~~~~w~~l~g~l~~~~Wvi~~l~Pf~~gL~gR~-~~~P~~v~~~s~~la~ 1020 (1049)
.++.....|. .....|+...+.+.+|++..-++.+. .-.+...++.+++.+.
T Consensus 286 ~l~~~~~~~~-~i~~~~~~~a~~~v~~~~~~~~l~~~~~~~~~~~~~~~i~~~i 338 (344)
T PF04123_consen 286 YLRRDFRLWR-YINAPFFVIAIGLVLYGFSAYFLSISFTLTSIQFLAISIVVGI 338 (344)
T ss_pred HHccCcchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3444444465 44556777777777778887777664 2333333334433333
No 166
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.88 E-value=33 Score=38.88 Aligned_cols=22 Identities=36% Similarity=0.992 Sum_probs=17.3
Q ss_pred ccCCcccCCcCCCCcCCCCCCCceeccCCCC
Q 045222 33 QLGGQKCHICGDDVGLPVDGGDPFVACNECA 63 (1049)
Q Consensus 33 ~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~ 63 (1049)
..++..|.-||+- =|++|-.|.
T Consensus 226 ~~~~~~C~~CGg~---------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA---------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc---------ceEecCCCC
Confidence 5566899999865 599999883
No 167
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=28.86 E-value=23 Score=29.85 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=30.6
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhh
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERRE 77 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerke 77 (1049)
.+.|++|+...++... -.-|.-||--+|..|-.+....
T Consensus 2 ~~~C~~C~~~F~~~~r----k~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRR----RHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCcc----ccccCcCcCCcChHHcCCeeec
Confidence 4689999999888654 3669999999999999877553
No 168
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.29 E-value=20 Score=35.50 Aligned_cols=29 Identities=17% Similarity=0.570 Sum_probs=16.8
Q ss_pred eeccCCCCCccchhhHHHHHhh-cCCCCCCCcccccc
Q 045222 56 FVACNECAFPICRTCYEYERRE-GNQVCPQCKTRFRR 91 (1049)
Q Consensus 56 FvaC~eC~FpvCRpCYeyerke-g~q~CPqCkt~Ykr 91 (1049)
-+-|+.|+ ++++..+ .-..||+|+.+-.+
T Consensus 71 ~~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 71 ELECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 45576666 2334333 22359999987544
No 169
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=28.27 E-value=47 Score=27.28 Aligned_cols=34 Identities=24% Similarity=0.876 Sum_probs=25.8
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCC-CCccchhhHHHHH
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNEC-AFPICRTCYEYER 75 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC-~FpvCRpCYeyer 75 (1049)
...|..|+..+ . |.-| -|.+| .|-+|..||..-+
T Consensus 4 ~~~C~~C~~~i--~---g~ry-~C~~C~d~dlC~~Cf~~~~ 38 (44)
T smart00291 4 SYSCDTCGKPI--V---GVRY-HCLVCPDYDLCQSCFAKGS 38 (44)
T ss_pred CcCCCCCCCCC--c---CCEE-ECCCCCCccchHHHHhCcC
Confidence 45799999854 2 4345 79999 9999999997433
No 170
>PRK07219 DNA topoisomerase I; Validated
Probab=27.93 E-value=29 Score=45.02 Aligned_cols=54 Identities=24% Similarity=0.706 Sum_probs=31.2
Q ss_pred CcccCCcCCCCcCC-CCCCCceeccCCCCCccchhhHHHHH----hhcCCCCCCCccccccc
Q 045222 36 GQKCHICGDDVGLP-VDGGDPFVACNECAFPICRTCYEYER----REGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~-~~~G~~FvaC~eC~FpvCRpCYeyer----keg~q~CPqCkt~Ykr~ 92 (1049)
...|+.||..+.+. -..|. |..|. +||-|+.-+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34677787664432 12155 88885 6777764332211 12347899998866543
No 171
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=27.70 E-value=35 Score=29.39 Aligned_cols=27 Identities=33% Similarity=0.794 Sum_probs=17.8
Q ss_pred ccCCcCCC-CcCCCCCCC-----ceeccCCCCC
Q 045222 38 KCHICGDD-VGLPVDGGD-----PFVACNECAF 64 (1049)
Q Consensus 38 ~CqiCgd~-vg~~~~~G~-----~FvaC~eC~F 64 (1049)
.|.-||.. +....+.+. .+|-|++|+.
T Consensus 5 PCPFCG~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 5 PCPFCGSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CCCCCCCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 59999955 433332232 6888999876
No 172
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=27.61 E-value=80 Score=28.18 Aligned_cols=50 Identities=26% Similarity=0.577 Sum_probs=36.3
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcC-CCCCCCcc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGN-QVCPQCKT 87 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~-q~CPqCkt 87 (1049)
....|.-||-.|--.+. + +-.+|.+||=-+-.=|.. -||-++ -.||.|+-
T Consensus 6 ~~~~CtSCg~~i~~~~~-~-~~F~CPnCG~~~I~RC~~-CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREK-A-VKFLCPNCGEVIIYRCEK-CRKQSNPYTCPKCGF 56 (59)
T ss_pred cCccccCCCCcccCCCc-c-CEeeCCCCCCeeEeechh-HHhcCCceECCCCCC
Confidence 34589999999755543 3 566899999875555773 677776 67999973
No 173
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=27.51 E-value=66 Score=38.85 Aligned_cols=48 Identities=25% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCC-CCeEEEEEcCCCChhh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPV-DKVSCYVSDDGAAMLT 401 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~-~kl~vyV~DDG~s~~T 401 (1049)
...|.+-|+|-+|| =| .-+.+||.++++.. |. ++..|+|+.||....|
T Consensus 90 ~~~~~~pVlV~AcN---Rp-~yl~r~L~sLl~~r-p~~~~fpIiVSQDg~~~~~ 138 (434)
T PF03071_consen 90 NKEPVIPVLVFACN---RP-DYLRRTLDSLLKYR-PSAEKFPIIVSQDGDDEEV 138 (434)
T ss_dssp -------EEEEESS----T-T-HHHHHHHHHHH--S-TTTS-EEEEE-TT-HHH
T ss_pred cCCCcceEEEEecC---Cc-HHHHHHHHHHHHcC-CCCCCccEEEEecCCcHHH
Confidence 34677888999998 55 67999999999988 65 6888999999987643
No 174
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=27.29 E-value=1.3e+02 Score=35.56 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=27.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhc
Q 045222 501 AGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMM 543 (1049)
Q Consensus 501 AGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~ 543 (1049)
...+-++++. + +.++|++.|||+-.-+++.+++++..+.
T Consensus 84 ~~SV~~gL~~---l-~~d~VLVhdadrPfv~~e~I~~li~~~~ 122 (378)
T PRK09382 84 QESVRNALEA---L-DSEYVLIHDAARPFVPKELIDRLIEALD 122 (378)
T ss_pred HHHHHHHHHh---c-CCCeEEEeeccccCCCHHHHHHHHHHhh
Confidence 4455555552 2 3489999999986568899988886553
No 175
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=27.27 E-value=22 Score=35.09 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=18.0
Q ss_pred eeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 56 FVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 56 FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
-.-|+.|+ ++++..+-.-.||+|+.+-.+.
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~i 99 (115)
T TIGR00100 70 ECECEDCS-------EEVSPEIDLYRCPKCHGIMLQV 99 (115)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCcCCCcEE
Confidence 35576666 3344444456799999765443
No 176
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=27.24 E-value=25 Score=27.20 Aligned_cols=24 Identities=42% Similarity=1.065 Sum_probs=11.8
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCC
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAF 64 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~F 64 (1049)
.|..|+.+-.+ +| |.+|| |.+|++
T Consensus 4 ~Cp~C~se~~y-~D-~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY-ED-GELLV-CPECGH 27 (30)
T ss_dssp --TTT-----E-E--SSSEE-ETTTTE
T ss_pred CCCCCCCccee-cc-CCEEe-CCcccc
Confidence 68889988666 55 66665 888875
No 177
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=27.05 E-value=46 Score=27.45 Aligned_cols=45 Identities=24% Similarity=0.750 Sum_probs=29.8
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHh-----hcCCCCCCCcc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERR-----EGNQVCPQCKT 87 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerk-----eg~q~CPqCkt 87 (1049)
+|+|||. ..+ ++..|.|..|.--+=..|.....+ ++.=.||.|+.
T Consensus 1 ~C~vC~~----~~~-~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDD-DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCT-TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCC-CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5999999 333 567999999987666666654322 33556766653
No 178
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=26.48 E-value=30 Score=37.38 Aligned_cols=27 Identities=37% Similarity=0.989 Sum_probs=17.6
Q ss_pred ccCCcCCC-C--c-CCCCCCCceeccCCCCC
Q 045222 38 KCHICGDD-V--G-LPVDGGDPFVACNECAF 64 (1049)
Q Consensus 38 ~CqiCgd~-v--g-~~~~~G~~FvaC~eC~F 64 (1049)
.|..||++ + . +.+.++++.+-|+|||.
T Consensus 8 ~Cp~Cg~eev~hEVik~~g~~~lvrC~eCG~ 38 (201)
T COG1326 8 ECPSCGSEEVSHEVIKERGREPLVRCEECGT 38 (201)
T ss_pred ECCCCCcchhhHHHHHhcCCceEEEccCCCc
Confidence 69999933 4 1 23443667888888874
No 179
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=26.22 E-value=31 Score=31.11 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=17.2
Q ss_pred ceeccCCCCCccchhhHHHHHhhcCCCCCCCccc
Q 045222 55 PFVACNECAFPICRTCYEYERREGNQVCPQCKTR 88 (1049)
Q Consensus 55 ~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~ 88 (1049)
.|.||.+|.+-+ + .+.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~-~~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------P-EKTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------C-CCcCCCCCCC
Confidence 467888888776 2 3599999984
No 180
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=26.03 E-value=60 Score=29.29 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=31.1
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.|.||++=. . | +-++. ||.-.||.|-+--.+.++..||.|+.+..
T Consensus 6 ~CpIt~~lM-~--d---PVi~~--~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 6 LCPITGELM-R--D---PVILP--SGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp B-TTTSSB--S--S---EEEET--TSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred CCcCcCcHh-h--C---ceeCC--cCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 799998642 2 2 54554 67999999998888888899999987763
No 181
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.88 E-value=24 Score=44.62 Aligned_cols=13 Identities=31% Similarity=0.744 Sum_probs=8.9
Q ss_pred CCCCCCCcccccc
Q 045222 79 NQVCPQCKTRFRR 91 (1049)
Q Consensus 79 ~q~CPqCkt~Ykr 91 (1049)
...||.|+...-+
T Consensus 422 p~~Cp~Cgs~~l~ 434 (665)
T PRK14873 422 DWRCPRCGSDRLR 434 (665)
T ss_pred CccCCCCcCCcce
Confidence 5688888776443
No 182
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.71 E-value=66 Score=36.76 Aligned_cols=49 Identities=22% Similarity=0.653 Sum_probs=38.7
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.+.-.|-+|=+.. .| -.|-.||---|-.|-. |--...+.||.|++.+.-
T Consensus 237 ~a~~kC~LCLe~~---~~-----pSaTpCGHiFCWsCI~-~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENR---SN-----PSATPCGHIFCWSCIL-EWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCC---CC-----CCcCcCcchHHHHHHH-HHHccccCCCcccccCCC
Confidence 4556899998874 12 4578999999999995 777777889999998864
No 183
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=25.58 E-value=23 Score=35.72 Aligned_cols=53 Identities=30% Similarity=0.614 Sum_probs=34.3
Q ss_pred cCCcccCCcCC-C-CcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 34 LGGQKCHICGD-D-VGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 34 ~~~~~CqiCgd-~-vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.-+..|.-||. + +......|-.|..| +.||.||.=.. .+...+.||+|.-+..
T Consensus 58 ~~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~~--~~~~~~~cp~c~~~~~ 112 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTEK--PKPKEKKCPKCGSRKL 112 (140)
T ss_pred cCceeCCCCCCCceEEEeccCCceEEee--cCCCcCceeec--CCcccccCCcCCCcee
Confidence 34568999994 3 33333323379999 89999996443 2333355999997444
No 184
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=25.29 E-value=39 Score=35.11 Aligned_cols=44 Identities=23% Similarity=0.579 Sum_probs=38.6
Q ss_pred CcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 46 VGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 46 vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
||+..+ |-.=+-|.-|+|.-|..=.|-++...+-+=|+|--+|-
T Consensus 78 IG~Kas-g~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 78 IGVKAS-GTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEeccC-CccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 677777 77888899999999999888888888889999999996
No 185
>PF12773 DZR: Double zinc ribbon
Probab=25.24 E-value=46 Score=27.56 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=6.5
Q ss_pred CcccCCcCCCCc
Q 045222 36 GQKCHICGDDVG 47 (1049)
Q Consensus 36 ~~~CqiCgd~vg 47 (1049)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 345555555554
No 186
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=24.97 E-value=24 Score=45.31 Aligned_cols=46 Identities=30% Similarity=0.811 Sum_probs=0.0
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCc-----cchhhHHHHHhhcCCCCCCCcccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFP-----ICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~Fp-----vCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.--.|.-||..- .+.-|.+||-+ .|+.|-. +..+ ..||.|++.-..
T Consensus 654 ~~r~Cp~Cg~~t--------~~~~Cp~CG~~T~~~~~Cp~C~~-~~~~--~~C~~C~~~~~~ 704 (900)
T PF03833_consen 654 GRRRCPKCGKET--------FYNRCPECGSHTEPVYVCPDCGI-EVEE--DECPKCGRETTS 704 (900)
T ss_dssp --------------------------------------------------------------
T ss_pred ecccCcccCCcc--------hhhcCcccCCccccceecccccc-ccCc--cccccccccCcc
Confidence 344788888762 45668889876 7888875 3222 388888877543
No 187
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.62 E-value=34 Score=45.81 Aligned_cols=48 Identities=23% Similarity=0.650 Sum_probs=30.2
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCcc-----chhhHHHHHh--hcCCCCCCCccccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPI-----CRTCYEYERR--EGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~Fpv-----CRpCYeyerk--eg~q~CPqCkt~Ykr~ 92 (1049)
..|.-||..+- ..-|.+||-+. |..|=..--. .+...||.|+++-...
T Consensus 668 rkCPkCG~~t~--------~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETY--------ENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCccc--------cccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 47888888641 12688888664 7777541111 2245799999876543
No 188
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.60 E-value=1.2e+03 Score=27.52 Aligned_cols=17 Identities=24% Similarity=0.636 Sum_probs=13.7
Q ss_pred eeccccccccccchhHH
Q 045222 880 RWSGVGIDEWWRNEQFW 896 (1049)
Q Consensus 880 rwsGvsi~~wWr~e~~W 896 (1049)
+-.|-.|+.||....|+
T Consensus 173 ~~NGS~Ik~WW~~HHy~ 189 (330)
T PF07851_consen 173 IVNGSRIKGWWVFHHYI 189 (330)
T ss_pred ccCCCcchHHHHHHHHH
Confidence 45577889999988887
No 189
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=24.30 E-value=24 Score=34.82 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=16.8
Q ss_pred eeccCCCCCccchhhHHHHHhhcC-CCCCCCccccc
Q 045222 56 FVACNECAFPICRTCYEYERREGN-QVCPQCKTRFR 90 (1049)
Q Consensus 56 FvaC~eC~FpvCRpCYeyerkeg~-q~CPqCkt~Yk 90 (1049)
-.-|+.|+. +++..+.. -.||+|+.+-.
T Consensus 70 ~~~C~~Cg~-------~~~~~~~~~~~CP~Cgs~~~ 98 (114)
T PRK03681 70 ECWCETCQQ-------YVTLLTQRVRRCPQCHGDML 98 (114)
T ss_pred EEEcccCCC-------eeecCCccCCcCcCcCCCCc
Confidence 455777762 34443333 56999997643
No 190
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=24.25 E-value=58 Score=26.57 Aligned_cols=39 Identities=38% Similarity=0.881 Sum_probs=24.0
Q ss_pred cCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCC---CCCCC
Q 045222 39 CHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQ---VCPQC 85 (1049)
Q Consensus 39 CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q---~CPqC 85 (1049)
|.||-|-..- + |.- +||--.|+.|.+--.++..+ .||+|
T Consensus 1 CpiC~~~~~~------P-v~l-~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD------P-VSL-PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS------E-EE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC------c-ccc-CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 6777766422 2 223 68999999999766554433 69998
No 191
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=24.14 E-value=53 Score=26.10 Aligned_cols=30 Identities=23% Similarity=0.609 Sum_probs=22.4
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHH
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEY 73 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYey 73 (1049)
...|..|++.. +-.-|.+|.-++|..|...
T Consensus 3 ~~~C~~H~~~~--------~~~~C~~C~~~~C~~C~~~ 32 (42)
T PF00643_consen 3 EPKCPEHPEEP--------LSLFCEDCNEPLCSECTVS 32 (42)
T ss_dssp SSB-SSTTTSB--------EEEEETTTTEEEEHHHHHT
T ss_pred CccCccCCccc--------eEEEecCCCCccCccCCCC
Confidence 45788887642 4467999999999999963
No 192
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.66 E-value=41 Score=35.82 Aligned_cols=42 Identities=29% Similarity=0.718 Sum_probs=34.2
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCK 86 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCk 86 (1049)
--.|+||-+...- + ....|+--.|+.|-..-.. +.-.||.|+
T Consensus 13 ~~~C~iC~~~~~~------p--~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 13 ELTCPICLEYFRE------P--VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred cccChhhHHHhhc------C--ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 4489999988633 3 4567999999999987777 778999999
No 193
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=22.90 E-value=28 Score=38.61 Aligned_cols=55 Identities=27% Similarity=0.661 Sum_probs=45.4
Q ss_pred CcccCCcCCCCcCCCCCCCc-eeccCCCCCccchhhHHHHHhhcCCCCC--CCcccccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDP-FVACNECAFPICRTCYEYERREGNQVCP--QCKTRFRRLK 93 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~-FvaC~eC~FpvCRpCYeyerkeg~q~CP--qCkt~Ykr~k 93 (1049)
...|.+|--|.-++.| + |.-=.||--.+|-.|..---.-|-.-|| +|++-.+..|
T Consensus 10 d~~CPvCksDrYLnPd---ik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k 67 (314)
T COG5220 10 DRRCPVCKSDRYLNPD---IKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK 67 (314)
T ss_pred cccCCccccccccCCC---eEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence 3479999999999988 4 5555689999999999877889999999 9988766543
No 194
>PRK11595 DNA utilization protein GntX; Provisional
Probab=22.82 E-value=56 Score=35.68 Aligned_cols=39 Identities=28% Similarity=0.642 Sum_probs=25.4
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTR 88 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~ 88 (1049)
+..|.+||..+..+. ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~-------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH-------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC-------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 457999998863221 23688887643332 3589999865
No 195
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.75 E-value=70 Score=23.67 Aligned_cols=24 Identities=29% Similarity=0.861 Sum_probs=11.6
Q ss_pred cCCcCCCCcCCCCCCCceeccCCCCC
Q 045222 39 CHICGDDVGLPVDGGDPFVACNECAF 64 (1049)
Q Consensus 39 CqiCgd~vg~~~~~G~~FvaC~eC~F 64 (1049)
|..||-.|--.+. |-. -.|.+|||
T Consensus 1 C~sC~~~i~~r~~-~v~-f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQ-AVP-FPCPNCGF 24 (24)
T ss_pred CccCCCcccCccc-Cce-EeCCCCCC
Confidence 4556555433332 333 34767765
No 196
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=22.66 E-value=29 Score=30.94 Aligned_cols=42 Identities=29% Similarity=0.649 Sum_probs=31.0
Q ss_pred eeccCCCCCccchhhHHHHHhhcCCCCCCCccccccccCCcccCCCC
Q 045222 56 FVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRLKGSARVEGDE 102 (1049)
Q Consensus 56 FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kgsprv~gd~ 102 (1049)
.+||..|.=| ..|-+..+.-.||+||.-|.-..|-|..--||
T Consensus 8 iLaCP~~kg~-----L~~~~~~~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 8 ILACPVCKGP-----LVYDEEKQELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred eeeccCcCCc-----ceEeccCCEEEecccCceeecccCccccCchh
Confidence 5778555444 55666666789999999999888888766554
No 197
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=76 Score=28.38 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=33.8
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcC-CCCCCCc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGN-QVCPQCK 86 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~-q~CPqCk 86 (1049)
..+|--||-.|-..+. + +-.+|.+||=-+-.-|-. -||-|+ -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~-~-v~F~CPnCGe~~I~Rc~~-CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGET-A-VKFPCPNCGEVEIYRCAK-CRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCc-e-eEeeCCCCCceeeehhhh-HHHcCCceECCCcC
Confidence 3589999999866655 4 455799999555445553 467666 6799886
No 198
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=22.53 E-value=36 Score=40.79 Aligned_cols=33 Identities=18% Similarity=0.554 Sum_probs=22.6
Q ss_pred eccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 57 VACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 57 vaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
++|++|+--+.+|=- +..+...||+|+++-.|+
T Consensus 11 ~~C~~Cd~l~~~~~l---~~g~~a~CpRCg~~L~~~ 43 (419)
T PRK15103 11 ILCPQCDMLVALPRL---EHGQKAACPRCGTTLTVR 43 (419)
T ss_pred ccCCCCCceeecCCC---CCCCeeECCCCCCCCcCC
Confidence 789999887654411 122346799999998765
No 199
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=22.38 E-value=39 Score=43.27 Aligned_cols=44 Identities=32% Similarity=0.751 Sum_probs=0.0
Q ss_pred cCCcCCCCcCCCCCCCceeccCCC----------CCccchhhHHHHHhhcCCCCCCCccccccccCC
Q 045222 39 CHICGDDVGLPVDGGDPFVACNEC----------AFPICRTCYEYERREGNQVCPQCKTRFRRLKGS 95 (1049)
Q Consensus 39 CqiCgd~vg~~~~~G~~FvaC~eC----------~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kgs 95 (1049)
|+-||.- .-|..| +-..|+-|= |. +.--+.||+|+..+-+..|.
T Consensus 438 C~~Cg~v-----------~~Cp~Cd~~lt~H~~~~~L~CH~Cg-~~-~~~p~~Cp~Cgs~~L~~~G~ 491 (730)
T COG1198 438 CRDCGYI-----------AECPNCDSPLTLHKATGQLRCHYCG-YQ-EPIPQSCPECGSEHLRAVGP 491 (730)
T ss_pred cccCCCc-----------ccCCCCCcceEEecCCCeeEeCCCC-CC-CCCCCCCCCCCCCeeEEecc
No 200
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=22.30 E-value=27 Score=36.90 Aligned_cols=35 Identities=31% Similarity=0.781 Sum_probs=21.4
Q ss_pred cccCCcCCCCcC----CCCCCCceeccCCCCCccchhhH
Q 045222 37 QKCHICGDDVGL----PVDGGDPFVACNECAFPICRTCY 71 (1049)
Q Consensus 37 ~~CqiCgd~vg~----~~~~G~~FvaC~eC~FpvCRpCY 71 (1049)
.+|..||.+--. ..++..+.|--+|--.|+||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988332 23312345556788899999998
No 201
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=22.07 E-value=38 Score=26.95 Aligned_cols=10 Identities=30% Similarity=1.384 Sum_probs=9.1
Q ss_pred CCCCCccccc
Q 045222 81 VCPQCKTRFR 90 (1049)
Q Consensus 81 ~CPqCkt~Yk 90 (1049)
.||+|+++|+
T Consensus 4 ~Cp~C~~~y~ 13 (36)
T PF13717_consen 4 TCPNCQAKYE 13 (36)
T ss_pred ECCCCCCEEe
Confidence 5999999996
No 202
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=21.98 E-value=44 Score=34.11 Aligned_cols=26 Identities=35% Similarity=0.916 Sum_probs=20.9
Q ss_pred ccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 58 ACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 58 aC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.|.+|+-|.=| |+|.-.||-|.++..
T Consensus 30 hCp~Cg~PLF~-------KdG~v~CPvC~~~~~ 55 (131)
T COG1645 30 HCPKCGTPLFR-------KDGEVFCPVCGYREV 55 (131)
T ss_pred hCcccCCccee-------eCCeEECCCCCceEE
Confidence 49999988743 899999999996544
No 203
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=21.95 E-value=73 Score=36.89 Aligned_cols=44 Identities=25% Similarity=0.568 Sum_probs=29.1
Q ss_pred CCcccCCcCCC--Cc---CCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcc
Q 045222 35 GGQKCHICGDD--VG---LPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKT 87 (1049)
Q Consensus 35 ~~~~CqiCgd~--vg---~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt 87 (1049)
..+.|.+||.. ++ ...++|.-+.-|.-|+. |.+-.+-.||.|+.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCES---------EWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCC---------cccccCccCCCCCC
Confidence 46799999988 22 22233888888877764 44445566777764
No 204
>PRK04296 thymidine kinase; Provisional
Probab=21.79 E-value=33 Score=36.23 Aligned_cols=36 Identities=31% Similarity=0.602 Sum_probs=24.0
Q ss_pred cccCCcCCCCcCCC---C------CCCc-eeccCCCCCccchhhHH
Q 045222 37 QKCHICGDDVGLPV---D------GGDP-FVACNECAFPICRTCYE 72 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~---~------~G~~-FvaC~eC~FpvCRpCYe 72 (1049)
.+|..||.+--.|. + +|+. -+--.|=-.|+||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 48999998843321 1 1443 35555667899999995
No 205
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=21.75 E-value=61 Score=26.21 Aligned_cols=29 Identities=34% Similarity=0.919 Sum_probs=20.0
Q ss_pred cccCCcCCCCcC-CCCCCCceeccCCCCCccch
Q 045222 37 QKCHICGDDVGL-PVDGGDPFVACNECAFPICR 68 (1049)
Q Consensus 37 ~~CqiCgd~vg~-~~~~G~~FvaC~eC~FpvCR 68 (1049)
..|..||..+-+ +...| .|.+|. +||-|+
T Consensus 2 ~~CP~Cg~~lv~r~~k~g-~F~~Cs--~yP~C~ 31 (39)
T PF01396_consen 2 EKCPKCGGPLVLRRGKKG-KFLGCS--NYPECK 31 (39)
T ss_pred cCCCCCCceeEEEECCCC-CEEECC--CCCCcC
Confidence 479999977433 33326 899994 677775
No 206
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=21.54 E-value=76 Score=26.57 Aligned_cols=30 Identities=30% Similarity=0.867 Sum_probs=22.3
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCC-CCccchhhHH
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNEC-AFPICRTCYE 72 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC-~FpvCRpCYe 72 (1049)
+|..|+...-... -..|.+| .|-+|..||.
T Consensus 2 ~Cd~C~~~~i~G~-----RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGIIGI-----RWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCcccC-----eEECCCCCCccchHHHhC
Confidence 6888985422222 3679999 8999999996
No 207
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=21.53 E-value=42 Score=35.53 Aligned_cols=29 Identities=28% Similarity=0.705 Sum_probs=19.3
Q ss_pred eeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 56 FVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 56 FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
.--|.+|||.+ +. |--..||-|+.+....
T Consensus 134 ~~vC~vCGy~~-------~g-e~P~~CPiCga~k~~F 162 (166)
T COG1592 134 VWVCPVCGYTH-------EG-EAPEVCPICGAPKEKF 162 (166)
T ss_pred EEEcCCCCCcc-------cC-CCCCcCCCCCChHHHh
Confidence 34577777753 34 6667888888776543
No 208
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=21.47 E-value=39 Score=26.91 Aligned_cols=11 Identities=64% Similarity=1.503 Sum_probs=9.6
Q ss_pred CCCCCcccccc
Q 045222 81 VCPQCKTRFRR 91 (1049)
Q Consensus 81 ~CPqCkt~Ykr 91 (1049)
.||+|+|.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999974
No 209
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=21.26 E-value=35 Score=33.58 Aligned_cols=30 Identities=23% Similarity=0.566 Sum_probs=15.2
Q ss_pred eeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 56 FVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 56 FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
-+-|+.|+..- +..+..-.||+|+.+..+.
T Consensus 70 ~~~C~~Cg~~~-------~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGHEF-------EPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS-EE-------ECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCCEE-------ecCCCCCCCcCCcCCCcEE
Confidence 45566666432 2223334499999986544
No 210
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.14 E-value=60 Score=37.84 Aligned_cols=50 Identities=26% Similarity=0.580 Sum_probs=35.4
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHh-hcCCCCCCCccccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERR-EGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerk-eg~q~CPqCkt~Ykr~ 92 (1049)
..++|+||...+-. ++---|+-.+|.-|----|. --...||=|||.-..-
T Consensus 60 en~~C~ICA~~~TY--------s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 60 ENMNCQICAGSTTY--------SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccceeEEecCCceE--------EEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 45799999987533 33334678899999854454 3347899999988643
No 211
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=21.06 E-value=1.3e+02 Score=25.39 Aligned_cols=45 Identities=29% Similarity=0.581 Sum_probs=27.9
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCC---ccchhhHHHHHh-hcCCCCCCCc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAF---PICRTCYEYERR-EGNQVCPQCK 86 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~F---pvCRpCYeyerk-eg~q~CPqCk 86 (1049)
+|.||-+ +-+++ ..+..+| .|.- -|=+.|.+.=.. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~-~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEG-DPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCC-CeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999988 23333 4457788 4643 244677764443 4467899996
No 212
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.03 E-value=83 Score=36.98 Aligned_cols=67 Identities=21% Similarity=0.473 Sum_probs=44.1
Q ss_pred cCCcccCCcCCCCcCCCCCCCc-eeccCCCCCccchhhHHHHHhhc------CCCCCCCccccccccCCc-ccCCC
Q 045222 34 LGGQKCHICGDDVGLPVDGGDP-FVACNECAFPICRTCYEYERREG------NQVCPQCKTRFRRLKGSA-RVEGD 101 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~-FvaC~eC~FpvCRpCYeyerkeg------~q~CPqCkt~Ykr~kgsp-rv~gd 101 (1049)
..-..|-||.|.|.-..- .+- |--=..|..--|--|+--.|.-. ...||+|++.-+.--=|- .|+-+
T Consensus 159 s~~k~CGICme~i~ek~~-~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~ 233 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAA-SERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETK 233 (344)
T ss_pred cccccceehhhhccccch-hhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeec
Confidence 455699999999866651 221 32223466778999998777433 489999999988653332 44433
No 213
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=20.89 E-value=24 Score=25.97 Aligned_cols=13 Identities=23% Similarity=0.874 Sum_probs=7.5
Q ss_pred hhcCCCCCCCccc
Q 045222 76 REGNQVCPQCKTR 88 (1049)
Q Consensus 76 keg~q~CPqCkt~ 88 (1049)
.++...||.|+++
T Consensus 13 ~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 13 DPDAKFCPNCGAK 25 (26)
T ss_pred CcccccChhhCCC
Confidence 4555666666654
No 214
>PRK08359 transcription factor; Validated
Probab=20.89 E-value=35 Score=36.44 Aligned_cols=35 Identities=31% Similarity=0.870 Sum_probs=19.8
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhH-HHHH
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCY-EYER 75 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCY-eyer 75 (1049)
..|-|||.+|--. | .-|--.-=-.-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~g~---~-~~v~ieGael~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIRGP---G-HRIRIEGAELLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccCCC---C-eEEEEcCeEEehHHHHHHHhCC
Confidence 4599999997422 0 01111112256788999 6644
No 215
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=20.87 E-value=60 Score=37.15 Aligned_cols=46 Identities=24% Similarity=0.662 Sum_probs=36.5
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRF 89 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Y 89 (1049)
-.|..|+.-+--.. -.+| |+--.|..|.+-..-|..-.||.|.++=
T Consensus 275 LkCplc~~Llrnp~-----kT~c--C~~~fc~eci~~al~dsDf~CpnC~rkd 320 (427)
T COG5222 275 LKCPLCHCLLRNPM-----KTPC--CGHTFCDECIGTALLDSDFKCPNCSRKD 320 (427)
T ss_pred ccCcchhhhhhCcc-----cCcc--ccchHHHHHHhhhhhhccccCCCccccc
Confidence 47999986542222 2578 9999999999989999999999998864
No 216
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.77 E-value=85 Score=29.08 Aligned_cols=48 Identities=29% Similarity=0.718 Sum_probs=31.7
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
-|.-|+.|+--+.+ +-.+-=-||-| |..|-| .|-+ +.||.|+...-+.
T Consensus 7 nCECCDrDLpp~s~--dA~ICtfEcTF--CadCae-~~l~--g~CPnCGGelv~R 54 (84)
T COG3813 7 NCECCDRDLPPDST--DARICTFECTF--CADCAE-NRLH--GLCPNCGGELVAR 54 (84)
T ss_pred CCcccCCCCCCCCC--ceeEEEEeeeh--hHhHHH-Hhhc--CcCCCCCchhhcC
Confidence 58889988654433 33333347766 999986 2333 6899999877654
No 217
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=20.71 E-value=2.3e+02 Score=33.57 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHH
Q 045222 500 KAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREA 538 (1049)
Q Consensus 500 KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~ 538 (1049)
.-.+|+.+++..+ +..+++|++-|.|-+ |+|++|+.+
T Consensus 163 qR~~l~~l~~~~~-~~~dDliivSDvDEI-P~p~~l~~L 199 (356)
T PF04724_consen 163 QRNALNGLLRLAG-IQDDDLIIVSDVDEI-PSPETLKFL 199 (356)
T ss_pred HHHHHHHHhhhcC-CCCCCEEEEcCcccc-cCHHHHHHH
Confidence 3356777777666 678999999999999 899888655
No 218
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=20.22 E-value=53 Score=42.92 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=32.1
Q ss_pred CCcccCCcCCCCcC--CCCCCCceeccCCCCCccchhhHHHHH-----------hhcCCCCCCCcccccccc
Q 045222 35 GGQKCHICGDDVGL--PVDGGDPFVACNECAFPICRTCYEYER-----------REGNQVCPQCKTRFRRLK 93 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~--~~~~G~~FvaC~eC~FpvCRpCYeyer-----------keg~q~CPqCkt~Ykr~k 93 (1049)
....|..||..-.+ ....| .|++|. +||-|+.=....+ ......||.|+......+
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~ 659 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRH 659 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEec
Confidence 45689999864222 23325 599994 6777742111111 112468999987665443
No 219
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.22 E-value=40 Score=30.20 Aligned_cols=17 Identities=53% Similarity=1.087 Sum_probs=14.4
Q ss_pred HhhcCCCCCCCcccccc
Q 045222 75 RREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 75 rkeg~q~CPqCkt~Ykr 91 (1049)
-++|.-.||=|.|+|+-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 46888999999999973
No 220
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=20.18 E-value=65 Score=28.96 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=7.2
Q ss_pred ccCCcccCCCCc
Q 045222 92 LKGSARVEGDEE 103 (1049)
Q Consensus 92 ~kgsprv~gd~~ 103 (1049)
..|.=||.|.++
T Consensus 41 ~~e~y~Ip~~~~ 52 (62)
T PRK00418 41 AAEEKRIPSSGD 52 (62)
T ss_pred HcCCcccCCCCC
Confidence 455667777543
Done!