Query 045222
Match_columns 1049
No_of_seqs 386 out of 1894
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:30:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 8E-52 2.7E-56 507.7 45.0 492 274-1001 65-571 (802)
2 1weo_A Cellulose synthase, cat 100.0 1.3E-44 4.4E-49 324.9 8.2 84 28-112 8-91 (93)
3 2z86_A Chondroitin synthase; G 99.6 3.7E-15 1.3E-19 176.8 16.3 129 348-564 89-218 (625)
4 1xhb_A Polypeptide N-acetylgal 99.6 9.9E-15 3.4E-19 167.6 16.1 116 348-545 25-143 (472)
5 3bcv_A Putative glycosyltransf 99.6 9.4E-15 3.2E-19 150.7 13.5 110 350-545 3-112 (240)
6 2d7i_A Polypeptide N-acetylgal 99.5 2.6E-14 8.8E-19 169.4 15.3 114 349-544 109-223 (570)
7 1qg8_A Protein (spore coat pol 99.5 4.1E-15 1.4E-19 155.1 6.7 124 352-561 1-129 (255)
8 2ffu_A Ppgalnact-2, polypeptid 99.5 5.4E-14 1.9E-18 163.2 12.0 113 348-545 62-174 (501)
9 2z86_A Chondroitin synthase; G 99.4 1.7E-13 5.8E-18 162.6 10.9 125 349-563 372-497 (625)
10 3ckj_A Putative uncharacterize 99.2 4.4E-11 1.5E-15 131.9 12.6 124 350-558 46-170 (329)
11 4fix_A UDP-galactofuranosyl tr 99.2 5.5E-11 1.9E-15 143.6 10.6 127 348-556 176-304 (657)
12 3l7i_A Teichoic acid biosynthe 99.1 3.7E-12 1.3E-16 154.7 0.0 111 351-545 1-111 (729)
13 2fy7_A Beta-1,4-galactosyltran 99.0 2.5E-10 8.7E-15 125.0 5.1 53 747-799 201-263 (287)
14 3f1y_A Mannosyl-3-phosphoglyce 98.7 4.1E-08 1.4E-12 111.8 13.2 117 351-556 93-216 (387)
15 2nxv_A ATP synthase subunits r 98.3 1.7E-06 5.7E-11 91.7 10.9 45 501-554 63-112 (249)
16 2bo4_A Mannosylglycerate synth 97.4 0.00056 1.9E-08 78.2 11.7 43 497-543 73-119 (397)
17 1e4u_A Transcriptional repress 97.1 0.00076 2.6E-08 60.2 6.2 52 36-91 11-62 (78)
18 2zu9_A Mannosyl-3-phosphoglyce 97.0 0.0026 8.8E-08 72.7 11.3 42 498-542 143-185 (394)
19 1fo8_A Alpha-1,3-mannosyl-glyc 96.9 0.0015 5.1E-08 73.5 8.1 44 351-399 1-44 (343)
20 2wvl_A Mannosyl-3-phosphoglyce 96.7 0.013 4.6E-07 66.0 13.8 42 351-401 52-93 (391)
21 2ea6_A Ring finger protein 4; 89.6 0.38 1.3E-05 40.2 4.8 56 34-91 13-68 (69)
22 2d8s_A Cellular modulator of i 89.0 0.77 2.6E-05 41.0 6.5 55 33-91 12-70 (80)
23 2ect_A Ring finger protein 126 88.4 0.94 3.2E-05 39.1 6.6 53 34-92 13-65 (78)
24 3ng2_A RNF4, snurf, ring finge 88.2 0.23 7.9E-06 42.0 2.5 56 34-91 8-63 (71)
25 1t1h_A Gspef-atpub14, armadill 87.5 0.38 1.3E-05 41.6 3.5 47 36-90 8-54 (78)
26 1vyx_A ORF K3, K3RING; zinc-bi 87.1 0.56 1.9E-05 39.7 4.2 50 35-90 5-58 (60)
27 2ecy_A TNF receptor-associated 86.9 0.39 1.3E-05 40.4 3.1 48 36-91 15-62 (66)
28 2csz_A Synaptotagmin-like prot 86.8 0.33 1.1E-05 43.4 2.7 60 10-74 1-60 (76)
29 2ckl_B Ubiquitin ligase protei 86.2 0.37 1.3E-05 47.9 3.1 48 37-91 55-102 (165)
30 1chc_A Equine herpes virus-1 r 84.6 1.1 3.9E-05 37.4 4.9 49 36-92 5-53 (68)
31 2ct2_A Tripartite motif protei 84.6 1.7 5.8E-05 38.1 6.2 52 36-91 15-68 (88)
32 1iym_A EL5; ring-H2 finger, ub 84.5 1.2 4E-05 35.8 4.7 49 36-89 5-53 (55)
33 2xeu_A Ring finger protein 4; 84.4 0.38 1.3E-05 39.6 1.8 54 36-91 3-56 (64)
34 2ecm_A Ring finger and CHY zin 84.1 1.2 3.9E-05 35.7 4.6 50 35-89 4-53 (55)
35 1g25_A CDK-activating kinase a 83.9 1.1 3.7E-05 37.5 4.4 53 36-91 3-55 (65)
36 2c2l_A CHIP, carboxy terminus 83.4 0.69 2.4E-05 48.9 3.8 48 35-90 207-254 (281)
37 2ysl_A Tripartite motif-contai 82.9 0.98 3.4E-05 38.3 3.9 49 35-91 19-69 (73)
38 2f42_A STIP1 homology and U-bo 82.8 0.84 2.9E-05 46.9 3.9 47 36-90 106-152 (179)
39 2kiz_A E3 ubiquitin-protein li 82.5 2.2 7.6E-05 35.8 5.9 53 34-92 12-64 (69)
40 1v87_A Deltex protein 2; ring- 81.9 1.4 4.7E-05 40.8 4.8 58 36-93 25-96 (114)
41 3fl2_A E3 ubiquitin-protein li 81.2 1.2 4E-05 42.2 4.0 47 37-91 53-99 (124)
42 1x4j_A Ring finger protein 38; 80.9 0.68 2.3E-05 39.8 2.1 52 35-92 22-73 (75)
43 2ecv_A Tripartite motif-contai 80.4 1.8 6E-05 37.4 4.6 48 36-91 19-71 (85)
44 2yur_A Retinoblastoma-binding 79.5 1.9 6.4E-05 37.1 4.5 49 36-91 15-64 (74)
45 3lrq_A E3 ubiquitin-protein li 79.0 1.2 4.2E-05 40.7 3.3 47 37-90 23-69 (100)
46 2ecw_A Tripartite motif-contai 78.1 2 6.7E-05 37.1 4.2 48 36-91 19-71 (85)
47 2y43_A E3 ubiquitin-protein li 77.4 1.4 4.9E-05 39.8 3.3 47 37-91 23-69 (99)
48 2zet_C Melanophilin; complex, 77.0 0.3 1E-05 49.0 -1.5 51 35-88 67-117 (153)
49 2djb_A Polycomb group ring fin 76.8 4.4 0.00015 34.4 6.0 49 36-92 15-63 (72)
50 2ep4_A Ring finger protein 24; 76.7 2.7 9.3E-05 35.8 4.6 51 35-91 14-64 (74)
51 2kr4_A Ubiquitin conjugation f 76.6 1.8 6.1E-05 38.7 3.6 46 36-90 14-59 (85)
52 2csy_A Zinc finger protein 183 75.9 3.8 0.00013 35.6 5.5 46 36-90 15-60 (81)
53 3ztg_A E3 ubiquitin-protein li 75.7 2.1 7.3E-05 38.0 3.8 48 36-90 13-61 (92)
54 2kre_A Ubiquitin conjugation f 75.3 1.7 6E-05 40.1 3.2 46 36-90 29-74 (100)
55 1wgm_A Ubiquitin conjugation f 73.6 2.3 7.8E-05 39.2 3.6 46 36-90 22-68 (98)
56 2d8t_A Dactylidin, ring finger 73.6 3.6 0.00012 34.9 4.6 49 34-91 13-61 (71)
57 3hct_A TNF receptor-associated 73.5 2.4 8E-05 39.8 3.7 47 37-91 19-65 (118)
58 1z6u_A NP95-like ring finger p 71.7 3 0.0001 41.2 4.1 47 37-91 79-125 (150)
59 2ct0_A Non-SMC element 1 homol 71.4 1.7 5.7E-05 38.5 2.0 47 37-90 16-63 (74)
60 3l11_A E3 ubiquitin-protein li 71.3 1.3 4.3E-05 41.3 1.3 48 36-91 15-62 (115)
61 2ecl_A Ring-box protein 2; RNF 71.0 4.2 0.00014 35.8 4.5 55 35-91 14-76 (81)
62 1zbd_B Rabphilin-3A; G protein 69.8 2.6 9E-05 41.3 3.2 37 34-73 53-89 (134)
63 1jm7_A BRCA1, breast cancer ty 67.2 4.6 0.00016 36.9 4.2 47 37-91 22-70 (112)
64 2ckl_A Polycomb group ring fin 66.8 3.1 0.00011 38.3 2.9 48 36-91 15-62 (108)
65 1rmd_A RAG1; V(D)J recombinati 66.2 4.9 0.00017 37.3 4.2 48 36-91 23-70 (116)
66 4ayc_A E3 ubiquitin-protein li 65.4 4.3 0.00015 39.1 3.7 45 38-91 55-99 (138)
67 4ap4_A E3 ubiquitin ligase RNF 65.3 2.1 7.2E-05 40.0 1.5 55 35-91 71-125 (133)
68 3hcs_A TNF receptor-associated 64.8 3.4 0.00011 41.1 2.9 47 37-91 19-65 (170)
69 2l0b_A E3 ubiquitin-protein li 64.2 3.2 0.00011 37.2 2.4 50 35-90 39-88 (91)
70 1jm7_B BARD1, BRCA1-associated 63.3 3.7 0.00013 38.4 2.7 45 36-90 22-66 (117)
71 4ap4_A E3 ubiquitin ligase RNF 62.3 3.6 0.00012 38.3 2.5 56 35-92 6-61 (133)
72 2ecn_A Ring finger protein 141 61.4 6.4 0.00022 33.0 3.6 48 35-92 14-61 (70)
73 2gvi_A Conserved hypothetical 61.0 2.1 7.2E-05 44.6 0.6 29 34-73 170-202 (204)
74 2ysj_A Tripartite motif-contai 60.6 9.1 0.00031 31.4 4.4 42 36-85 20-63 (63)
75 1bor_A Transcription factor PM 60.3 7.8 0.00027 31.6 3.8 45 36-92 6-50 (56)
76 2egp_A Tripartite motif-contai 59.2 2.5 8.5E-05 36.3 0.6 48 36-91 12-65 (79)
77 2ea5_A Cell growth regulator w 59.1 11 0.00038 32.2 4.8 45 34-91 13-58 (68)
78 2vje_A E3 ubiquitin-protein li 58.5 4.7 0.00016 34.0 2.2 50 34-90 6-56 (64)
79 2y1n_A E3 ubiquitin-protein li 58.3 6.6 0.00022 44.9 4.1 47 37-91 333-379 (389)
80 3vth_A Hydrogenase maturation 56.5 4.2 0.00015 50.2 2.3 58 34-91 109-195 (761)
81 3dpl_R Ring-box protein 1; ubi 56.2 11 0.00038 35.2 4.6 55 35-90 36-100 (106)
82 3nw0_A Non-structural maintena 55.4 6.9 0.00024 41.7 3.4 49 36-91 180-229 (238)
83 3h0g_L DNA-directed RNA polyme 55.3 8.1 0.00028 33.4 3.2 30 34-66 19-48 (63)
84 3knv_A TNF receptor-associated 53.7 4.3 0.00015 39.7 1.4 45 37-89 32-76 (141)
85 2vje_B MDM4 protein; proto-onc 53.5 4.7 0.00016 33.9 1.4 47 36-91 7-56 (63)
86 2ecj_A Tripartite motif-contai 51.3 30 0.001 27.5 5.9 43 35-85 14-58 (58)
87 3ky9_A Proto-oncogene VAV; cal 46.4 8.4 0.00029 45.7 2.6 36 34-73 527-563 (587)
88 2k16_A Transcription initiatio 46.2 8.4 0.00029 33.5 1.9 53 35-92 17-72 (75)
89 3vk6_A E3 ubiquitin-protein li 44.9 8.3 0.00028 36.2 1.7 49 37-92 2-50 (101)
90 2vrw_B P95VAV, VAV1, proto-onc 43.8 13 0.00044 41.8 3.5 35 34-72 355-390 (406)
91 4g9i_A Hydrogenase maturation 42.1 6.6 0.00023 48.6 0.8 58 34-91 104-190 (772)
92 1wim_A KIAA0161 protein; ring 41.5 15 0.00052 32.8 2.9 49 36-89 5-62 (94)
93 3d00_A Tungsten formylmethanof 40.5 11 0.00037 39.0 2.0 26 34-72 161-186 (191)
94 2yu4_A E3 SUMO-protein ligase 40.3 22 0.00075 32.0 3.8 45 37-88 8-59 (94)
95 3ttc_A HYPF, transcriptional r 38.3 9.2 0.00031 46.5 1.2 55 35-89 16-99 (657)
96 1twf_L ABC10-alpha, DNA-direct 37.1 13 0.00043 32.8 1.6 26 37-65 29-54 (70)
97 2ecg_A Baculoviral IAP repeat- 36.7 28 0.00096 29.8 3.7 43 36-91 25-68 (75)
98 4ic3_A E3 ubiquitin-protein li 36.4 14 0.00048 31.8 1.7 42 37-91 25-67 (74)
99 3t6p_A Baculoviral IAP repeat- 35.0 12 0.00042 41.9 1.5 43 36-91 295-338 (345)
100 2ku3_A Bromodomain-containing 34.7 12 0.00041 32.7 1.1 56 30-88 10-66 (71)
101 2l43_A N-teminal domain from h 34.4 14 0.00046 33.6 1.4 55 32-89 21-76 (88)
102 2hf1_A Tetraacyldisaccharide-1 34.1 3.5 0.00012 36.0 -2.5 45 56-105 8-52 (68)
103 2cup_A Skeletal muscle LIM-pro 33.7 33 0.0011 30.7 3.8 24 63-89 53-76 (101)
104 3htk_C E3 SUMO-protein ligase 33.7 25 0.00086 38.2 3.5 50 34-90 179-231 (267)
105 2js4_A UPF0434 protein BB2007; 32.8 3.4 0.00012 36.3 -2.7 44 56-104 8-51 (70)
106 1tot_A CREB-binding protein; z 32.8 11 0.00036 31.2 0.3 31 36-73 6-37 (52)
107 1m3v_A FLIN4, fusion of the LI 32.2 32 0.0011 32.2 3.7 25 64-90 55-80 (122)
108 1xwh_A Autoimmune regulator; P 30.3 15 0.00051 31.4 0.9 58 31-97 3-63 (66)
109 1dl6_A Transcription factor II 30.1 44 0.0015 28.1 3.7 7 38-44 13-19 (58)
110 4a0k_B E3 ubiquitin-protein li 30.1 13 0.00044 35.6 0.5 55 35-90 47-111 (117)
111 2gmg_A Hypothetical protein PF 29.6 13 0.00045 35.1 0.5 27 57-89 68-94 (105)
112 3v43_A Histone acetyltransfera 28.9 42 0.0014 31.4 3.8 53 36-89 5-65 (112)
113 2c0n_A A197; thermophil protei 28.8 58 0.002 34.1 5.1 79 514-609 51-133 (203)
114 2d8y_A Eplin protein; LIM doma 28.6 1.1E+02 0.0036 27.0 6.3 20 29-48 8-27 (91)
115 3t7l_A Zinc finger FYVE domain 28.1 50 0.0017 29.9 4.0 57 30-90 14-75 (90)
116 1rut_X Flinc4, fusion protein 28.0 39 0.0013 34.0 3.7 25 64-90 55-80 (188)
117 1m4f_A Hepcidin; strand-loop-s 27.2 3.4 0.00012 29.9 -3.0 23 63-87 3-25 (26)
118 2xjy_A Rhombotin-2; oncoprotei 27.0 33 0.0011 32.2 2.8 47 37-89 30-76 (131)
119 2xqn_T Testin, TESS; metal-bin 26.8 48 0.0016 30.9 3.8 43 38-90 32-74 (126)
120 2jr6_A UPF0434 protein NMA0874 26.2 6.7 0.00023 34.2 -2.0 32 75-106 22-53 (68)
121 3lqh_A Histone-lysine N-methyl 26.2 28 0.00097 35.7 2.3 54 35-89 1-64 (183)
122 2kdx_A HYPA, hydrogenase/ureas 26.0 10 0.00035 35.9 -1.0 31 55-92 72-103 (119)
123 1we9_A PHD finger family prote 25.3 21 0.00073 29.9 1.0 54 35-92 5-62 (64)
124 2yho_A E3 ubiquitin-protein li 24.9 43 0.0015 29.3 2.9 42 37-91 19-61 (79)
125 3a43_A HYPD, hydrogenase nicke 24.9 9.8 0.00033 37.3 -1.4 13 79-91 107-119 (139)
126 2gai_A DNA topoisomerase I; zi 24.6 14 0.00048 44.7 -0.4 45 38-88 574-621 (633)
127 3q80_A 2-C-methyl-D-erythritol 24.5 70 0.0024 33.4 5.0 28 517-544 100-127 (231)
128 2pk7_A Uncharacterized protein 24.2 5.3 0.00018 35.0 -3.1 32 75-106 22-53 (69)
129 2jny_A Uncharacterized BCR; st 23.1 6.7 0.00023 34.2 -2.6 30 75-104 24-53 (67)
130 1z2q_A LM5-1; membrane protein 22.1 83 0.0028 28.0 4.3 39 31-73 16-54 (84)
131 2dj7_A Actin-binding LIM prote 22.0 49 0.0017 28.8 2.7 37 29-66 8-52 (80)
132 2l5u_A Chromodomain-helicase-D 21.8 57 0.0019 27.4 2.9 47 33-87 8-57 (61)
133 2jtn_A LIM domain-binding prot 21.8 1.2E+02 0.0042 30.1 5.9 52 34-89 58-129 (182)
134 2co8_A NEDD9 interacting prote 21.2 50 0.0017 28.8 2.6 62 31-96 10-79 (82)
135 2l9u_A Receptor tyrosine-prote 21.1 59 0.002 25.0 2.5 17 277-293 16-32 (40)
136 2orw_A Thymidine kinase; TMTK, 20.8 35 0.0012 34.1 1.7 35 37-72 138-178 (184)
137 2e72_A POGO transposable eleme 20.7 33 0.0011 28.2 1.1 15 78-92 11-25 (49)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=8e-52 Score=507.68 Aligned_cols=492 Identities=21% Similarity=0.315 Sum_probs=374.6
Q ss_pred hHH-HHHHHHHHHHHHHhhhhcccccc-----hhHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhccCCCC
Q 045222 274 YRM-IVIIRLVVLGFFFHYRVMHPVKD-----AYALWVISVICEVWFALSWILDQFPKWLPIDRETYLDRLSLRYEKPGQ 347 (1049)
Q Consensus 274 yR~-~iv~~lv~l~~yl~wRi~~~~~~-----a~~lWl~~~i~Eiwfa~~wiL~q~~kw~Pv~R~t~~drL~~r~~~~~~ 347 (1049)
.|+ ++++.+++.+.|++||++.+++. +.++|++++++|+++.+.|++..+..+.|..|...++ ..
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------LQ 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------CC
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---------CC
Confidence 455 45567777789999999987763 2467888999999999999999999999998876432 13
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhh
Q 045222 348 PSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKI 427 (1049)
Q Consensus 348 ~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~ 427 (1049)
++++|.|+|+||||| |++.++.+||.|+++++||.++++|+|+|||++|.|.+..
T Consensus 136 ~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~---------------------- 190 (802)
T 4hg6_A 136 PEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSP---------------------- 190 (802)
T ss_dssp TTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCS----------------------
T ss_pred ccCCCcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccC----------------------
Confidence 467999999999999 9998999999999999999999999999999998664320
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHH
Q 045222 428 DYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNAL 507 (1049)
Q Consensus 428 ~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~ 507 (1049)
.|+.+++.+ +.+++ ++.+.++ ..+.|+.|++ ++++|+||+|.+
T Consensus 191 -------d~~i~~~~~---~~~~~----l~~~~~~-------------------~~v~~i~~~~----~~~GKa~alN~g 233 (802)
T 4hg6_A 191 -------DPELAQKAQ---ERRRE----LQQLCRE-------------------LGVVYSTRER----NEHAKAGNMSAA 233 (802)
T ss_dssp -------SHHHHHHHH---HHHHH----HHHHHHH-------------------HTCEEEECSS----CCSHHHHHHHHH
T ss_pred -------CHHHHHHHH---hhhHH----HHHHHHh-------------------cCcEEEEecC----CCCcchHHHHHH
Confidence 011111111 01111 1111111 0268888877 578999999999
Q ss_pred HHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEEecCccccCCCCc-------cccchhhhhhHhh
Q 045222 508 VRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYVQFPRRFDGINQD-------DRFANRKTVFFDI 579 (1049)
Q Consensus 508 lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~VQ~PQ~F~nid~~-------D~yan~~~vFfdi 579 (1049)
++ .++++||+++|||++ +.|++|++++.+| .|| ++++||+|+.+.|.++. .++.+++..||..
T Consensus 234 l~----~a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp----~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (802)
T 4hg6_A 234 LE----RLKGELVVVFDADHV-PSRDFLARTVGYFVEDP----DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGK 304 (802)
T ss_dssp HH----HCCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHT
T ss_pred HH----hcCCCEEEEECCCCC-cChHHHHHHHHHHhcCC----CeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHH
Confidence 99 479999999999999 5899999999988 588 79999999999987642 4456778899999
Q ss_pred hccccccCCCcccccccchhhhhhhcCCCCCCCCCCCCCcCCCCCCCcCCCCcccCcccccccCCCchhhhhhhhcccCC
Q 045222 580 NMKGLDGIQGPINVGTGCVFRRQAFYGYDAPKTKKSPTRTSKCLPKWCCSGHCCSGRRRKKKINRPKSEIKKKFAMKDTA 659 (1049)
Q Consensus 580 ~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~~~~~~~~~~~~~~~~~~~~ 659 (1049)
...+.+.+++++++|++++|||+++.
T Consensus 305 ~~~~~~~~~~~~~~G~~~~~Rr~al~------------------------------------------------------ 330 (802)
T 4hg6_A 305 IHRGLDRWGGAFFCGSAAVLRRRALD------------------------------------------------------ 330 (802)
T ss_dssp HHHHHHHTTCCCCCSSSEEEEHHHHH------------------------------------------------------
T ss_pred HHhhHhhcCCceecccchhhhHHHHH------------------------------------------------------
Confidence 99999999999999999999998872
Q ss_pred ccccccchhccccccccccchhhhhHHHHHhhCCcHHHHhhhhhhcCCCCCCcchhhHHHHHHHhhcccccccccccccc
Q 045222 660 PMCAWEGIEEGIEGAEGEKSDTLLHQELEKKFGQSPVFVASTLLEDGGTPKSASLASLLKEAIHVISCGYEVKTEWGKEV 739 (1049)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~ev 739 (1049)
++||+++
T Consensus 331 --------------------------------------------~vGgf~~----------------------------- 337 (802)
T 4hg6_A 331 --------------------------------------------EAGGFAG----------------------------- 337 (802)
T ss_dssp --------------------------------------------HHTTCCC-----------------------------
T ss_pred --------------------------------------------HcCCcCC-----------------------------
Confidence 3566554
Q ss_pred ccccccccchHHHHHHHHHCCcEEEEecCCCCccccCCCcCHHHHHhhhheecccchhhhhhccCccccccCCCCChhhh
Q 045222 740 GWIYGSVTKDMLTGLIMHCHGWRSIYCIPDRPAFKGPAPINLSVCLHWVLRWALGSVEVFLSRHCPVWYGYGGGLKWLER 819 (1049)
Q Consensus 740 GW~ygsvTEDi~Tg~rLh~rGWrSvY~~~~~~Af~GlaP~tl~~~l~QR~RWA~G~lQI~lsr~~Pl~~g~~~~Ltl~QR 819 (1049)
++++||.+++++|+.+||+++|+++... ++.+|+|+.++++||.||++|.+|+++ +++|++ .+++++.||
T Consensus 338 ----~~~~ED~~l~~rl~~~G~ri~~~~~~~~--~~~~p~t~~~~~~Qr~RW~~G~~q~l~-~~~pl~---~~~l~~~~r 407 (802)
T 4hg6_A 338 ----ETITEDAETALEIHSRGWKSLYIDRAMI--AGLQPETFASFIQQRGRWATGMMQMLL-LKNPLF---RRGLGIAQR 407 (802)
T ss_dssp ----SSSSHHHHHHHHHHTTTCCEEECCCCCE--EECCCCSHHHHHHHHHHHHHHHHHHHH-HSCTTS---CSSCCHHHH
T ss_pred ----CCcchHHHHHHHHHHcCCeEEEecCCEE--EecCCCCHHHHHHHHHHHHccHHHHHH-HhCccc---cCCCCHHHH
Confidence 4788999999999999999999975554 899999999999999999999999998 457886 688999999
Q ss_pred HhHHhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhhchHHHHHHHHHHHH-HHHHHhhhheeeccccccccccchhHHHh
Q 045222 820 LSYINACLYPFTSIPLLVYCALPAVCLLTGKFITPELTAVAGLYFMSLFM-CIFATSILEMRWSGVGIDEWWRNEQFWVI 898 (1049)
Q Consensus 820 L~Yl~s~ly~l~sl~~liylllP~l~LltG~~iip~~s~~~~~~fi~lfl-s~~~~~lLe~rwsGvsi~~wWr~e~~W~I 898 (1049)
+.|+...++|+.+++.++++++|+++++++..++......+..+++.+++ ...+...+. .+.. ..|| ++.++.+
T Consensus 408 l~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l~~~~~~~~~~---~~~r-~~~~-~~l~~~~ 482 (802)
T 4hg6_A 408 LCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAVSFLVQNALF---ARQR-WPLV-SEVYEVA 482 (802)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHH---TTTS-CTTH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHh---cCcH-HHHH-HHHHHHH
Confidence 99999999999999999999999999999998877543333322222222 222222221 1111 1233 3454433
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCCCeEeccCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh
Q 045222 899 GGISAHPVAVFQGLLKVLAGVDTDFTVTSKAGDVEAFSELYAFKWTTLLIPPTTLLIINLVGMVAGVSNAINNGHESWGL 978 (1049)
Q Consensus 899 ~~~sa~LfAv~~aLlkvl~g~~~~F~VT~K~~~~~~~~~ly~f~wt~l~iP~~tllilnlv~iv~gi~~~~~~~~~~w~~ 978 (1049)
.+.. .+.+++. ..+.+++.+|.||+|+...+.. +-+ .++.|++++++++++++++|+++...... +
T Consensus 483 ~~~~-~~~a~l~---~l~~~~~~~f~VT~Kg~~~~~~-----~~~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~~----~ 548 (802)
T 4hg6_A 483 QAPY-LARAIVT---TLLRPRSARFAVTAKDETLSEN-----YIS-PIYRPLLFTFLLCLSGVLATLVRWVAFPG----D 548 (802)
T ss_dssp HHHH-HHHHHHH---HHHSTTCCCCCCCCCCCCCSSC-----CBC-TTCHHHHHHHHHHHHHHHHHHHHHHHCGG----G
T ss_pred HHHH-HHHHHHH---HHhCCCCCcceECCCCcccccc-----chh-hHHHHHHHHHHHHHHHHHHHHHHHhccCC----c
Confidence 2221 1223333 3345688999999998754332 113 57789999999999999999998876532 3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 045222 979 LFGKLFFALWVIIHLFPFLKGLI 1001 (1049)
Q Consensus 979 l~g~l~~~~Wvi~~l~Pf~~gL~ 1001 (1049)
..+.+++++|+++|++...-++.
T Consensus 549 ~~~~~~~~~w~~~~l~~l~~~~~ 571 (802)
T 4hg6_A 549 RSVLLVVGGWAVLNVLLVGFALR 571 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhHHHHHHHHHHHHHHH
Confidence 55678999999999999888873
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=1.3e-44 Score=324.95 Aligned_cols=84 Identities=68% Similarity=1.353 Sum_probs=81.5
Q ss_pred CCccCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccccCCcccCCCCccccc
Q 045222 28 ARPLQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRLKGSARVEGDEEEDDI 107 (1049)
Q Consensus 28 ~~~~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kgsprv~gd~~~~~~ 107 (1049)
+|||+++++|+||||||+||+|+| ||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||+|+
T Consensus 8 ~kp~~~~~~qiCqiCGD~VG~~~~-Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~ 86 (93)
T 1weo_A 8 PKPLKNLDGQFCEICGDQIGLTVE-GDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDI 86 (93)
T ss_dssp SSCCSCCSSCBCSSSCCBCCBCSS-SSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCS
T ss_pred CCcccccCCCccccccCccccCCC-CCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCcccccccccc
Confidence 689999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q 045222 108 DDLEN 112 (1049)
Q Consensus 108 ~d~e~ 112 (1049)
||+++
T Consensus 87 dD~~~ 91 (93)
T 1weo_A 87 DSGPS 91 (93)
T ss_dssp CCCCS
T ss_pred ccccc
Confidence 98753
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.61 E-value=3.7e-15 Score=176.81 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=100.1
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhh
Q 045222 348 PSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKI 427 (1049)
Q Consensus 348 ~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~ 427 (1049)
+..+|.|+|+||||| |+ ..+.+||.|+++++||. .++|+|+|||+++.|.+.+ +
T Consensus 89 ~~~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~-------~-------------- 142 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIV-------R-------------- 142 (625)
T ss_dssp -CCCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHH-------H--------------
T ss_pred cccCCcEEEEEecCC---cH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHH-------H--------------
Confidence 356899999999999 86 68999999999999986 6899999999987431111 0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHH
Q 045222 428 DYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNAL 507 (1049)
Q Consensus 428 ~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~ 507 (1049)
++ . ..+++.|+.+++ +.++|++|+|.+
T Consensus 143 -----------------------~~----------------~----------~~~~i~~i~~~~----~~~g~~~a~N~g 169 (625)
T 2z86_A 143 -----------------------EF----------------E----------SLLNIKYVRQKD----YGYQLCAVRNLG 169 (625)
T ss_dssp -----------------------TT----------------T----------TTSCEEEEEECC----CSCCHHHHHHHH
T ss_pred -----------------------Hh----------------h----------hcCCeEEEEeCC----CCcchhHHHHHH
Confidence 00 0 113478887654 345799999999
Q ss_pred HHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCceeEEEecCccccCCC
Q 045222 508 VRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMM-DPLLGKRVCYVQFPRRFDGIN 564 (1049)
Q Consensus 508 lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~-Dp~~g~~v~~VQ~PQ~F~nid 564 (1049)
++ .++++||+++|+|++ +.|++|.+++.+|. +| .++.|+..+.+.+..
T Consensus 170 ~~----~a~g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~----~~~~~g~~~~~~~~~ 218 (625)
T 2z86_A 170 LR----AAKYNYVAILDCDMA-PNPLWVQSYMELLAVDD----NVALIGPRKYIDTSK 218 (625)
T ss_dssp HH----HCCSSEEEEECTTEE-ECTTHHHHHHHHHHHCT----TEEEECCEEEECCTT
T ss_pred HH----hCCcCEEEEECCCCC-CCHHHHHHHHHHHhcCC----ceEEEEeeeeccCcc
Confidence 99 469999999999999 58999999998775 56 688888777665543
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.58 E-value=9.9e-15 Score=167.64 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=92.7
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChh-hHHHhhhhHHHhhhCCCCchhhhhhh
Q 045222 348 PSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAML-TFEALSETSEFARKWPRAPEWYFAQK 426 (1049)
Q Consensus 348 ~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~-Tf~al~Ea~~fA~~Wpr~Pe~YF~~k 426 (1049)
++.+|.|+|+||+|| |+...+.+||.|+++++||...++|+|+|||+++. |.+.+
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l--------------------- 80 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPL--------------------- 80 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHH---------------------
T ss_pred CcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHH---------------------
Confidence 457999999999999 88678999999999999998778999999999872 32111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCC-cEEEEeccCCCCCCCCChHHHHH
Q 045222 427 IDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELP-RLVYVSREKRPGFNNHKKAGAMN 505 (1049)
Q Consensus 427 ~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP-~lvYvsRekrpg~~h~~KAGALN 505 (1049)
++|.+ ..| ++.++..+++ .++++|+|
T Consensus 81 --------------------~~~~~----------------------------~~~~~v~vi~~~~n-----~G~~~a~N 107 (472)
T 1xhb_A 81 --------------------ESYVK----------------------------KLKVPVHVIRMEQR-----SGLIRARL 107 (472)
T ss_dssp --------------------HHHHH----------------------------SSSSCEEEEECSSC-----CCHHHHHH
T ss_pred --------------------HHHHH----------------------------HCCCcEEEEECCCC-----CChHHHHH
Confidence 11111 235 6888877653 45999999
Q ss_pred HHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhc-CC
Q 045222 506 ALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMM-DP 545 (1049)
Q Consensus 506 ~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~-Dp 545 (1049)
.+++ .+.|+||+++|+|.. .+|++|.+++..+. +|
T Consensus 108 ~g~~----~A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~ 143 (472)
T 1xhb_A 108 KGAA----VSRGQVITFLDAHCE-CTAGWLEPLLARIKHDR 143 (472)
T ss_dssp HHHH----HCCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT
T ss_pred HHHH----hccCCeEEEECCCeE-eCccHHHHHHHHHHhCC
Confidence 9999 478999999999999 58999999998775 45
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.58 E-value=9.4e-15 Score=150.71 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=87.4
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhh
Q 045222 350 KLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDY 429 (1049)
Q Consensus 350 ~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~ 429 (1049)
..|.|+|+||||| ++ ..+.++|.|+++++||. ++|+|+|||+++.|.+.+.
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~~--~eiIvvDd~S~d~t~~~~~----------------------- 53 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLSD--IEIILIDDESPDNCPKICD----------------------- 53 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSSS--EEEEEEECCCSSSHHHHHH-----------------------
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCCC--eEEEEEECCCCcCHHHHHH-----------------------
Confidence 4689999999999 76 57899999999999984 8999999999985422111
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHH
Q 045222 430 LKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVR 509 (1049)
Q Consensus 430 lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lr 509 (1049)
+|.+ +.|++.++..+ +.++++|.|.+++
T Consensus 54 ------------------~~~~----------------------------~~~~i~~i~~~------n~G~~~a~N~g~~ 81 (240)
T 3bcv_A 54 ------------------DYAA----------------------------QYPNIKVIHKK------NAGLGMACNSGLD 81 (240)
T ss_dssp ------------------HHHH----------------------------HCSSEEEEECC------CCCHHHHHHHHHH
T ss_pred ------------------HHHh----------------------------hCCCEEEEECC------CCChHHHHHHHHH
Confidence 1111 12557888532 4579999999999
Q ss_pred hccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 045222 510 VSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDP 545 (1049)
Q Consensus 510 vSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp 545 (1049)
.++|+||+++|+|.+ ..|++|.+++..+.++
T Consensus 82 ----~a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 82 ----VATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp ----HCCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred ----HcCCCEEEEECCCCc-CCHHHHHHHHHHHHhc
Confidence 579999999999999 5899999999988763
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.54 E-value=2.6e-14 Score=169.41 Aligned_cols=114 Identities=16% Similarity=0.063 Sum_probs=91.5
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhh-HHHhhhhHHHhhhCCCCchhhhhhhh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT-FEALSETSEFARKWPRAPEWYFAQKI 427 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~T-f~al~Ea~~fA~~Wpr~Pe~YF~~k~ 427 (1049)
+.+|.|+|+||+|| |+...+.+||.|+++..||...++|+|+|||+++.| .+.+
T Consensus 109 ~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l---------------------- 163 (570)
T 2d7i_A 109 ETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPL---------------------- 163 (570)
T ss_dssp SSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHH----------------------
T ss_pred CCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHH----------------------
Confidence 56899999999999 886789999999999999976679999999999744 1111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHH
Q 045222 428 DYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNAL 507 (1049)
Q Consensus 428 ~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~ 507 (1049)
+++. ...|++.++..++ ..++++|+|.+
T Consensus 164 ----------------------~~~~-------------------------~~~~~v~vi~~~~-----n~G~~~A~N~G 191 (570)
T 2d7i_A 164 ----------------------EDYM-------------------------ALFPSVRILRTKK-----REGLIRTRMLG 191 (570)
T ss_dssp ----------------------HHHH-------------------------TTSTTEEEEECSS-----CCCHHHHHHHH
T ss_pred ----------------------HHHH-------------------------HhCCeEEEEECCC-----CCCHHHHHHHH
Confidence 1110 0235688887765 35699999999
Q ss_pred HHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 045222 508 VRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMD 544 (1049)
Q Consensus 508 lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~D 544 (1049)
++ .+.++||+++|+|.++ +|++|.+++..+.+
T Consensus 192 ~~----~A~gd~i~fLD~D~~~-~p~~L~~ll~~l~~ 223 (570)
T 2d7i_A 192 AS----VATGDVITFLDSHCEA-NVNWLPPLLDRIAR 223 (570)
T ss_dssp HH----HCCSSEEEECCSSEEE-CTTCSHHHHHHHHH
T ss_pred HH----hcCCCEEEEEcCCccc-cccHHHHHHHHHHh
Confidence 99 4789999999999995 89999999987754
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.54 E-value=4.1e-15 Score=155.10 Aligned_cols=124 Identities=13% Similarity=0.220 Sum_probs=95.0
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhhh
Q 045222 352 MPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYLK 431 (1049)
Q Consensus 352 P~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~lk 431 (1049)
|.|+|+||||| ++ ..+.+||.|+++++||. ++|+|+|||+++.|.+.+.+
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~~--~eiivvDd~S~d~t~~~~~~------------------------ 50 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFSD--FELFIMDDNSNEETLNVIRP------------------------ 50 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCCC--EEEEEEECSCCHHHHHHHGG------------------------
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCCc--eEEEEEECCCCchHHHHHHH------------------------
Confidence 78999999999 76 58999999999999994 89999999999854222111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCC----CCCChHHHHHHH
Q 045222 432 DKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGF----NNHKKAGAMNAL 507 (1049)
Q Consensus 432 ~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~----~h~~KAGALN~~ 507 (1049)
|. .-|++.|+..+. ++. ...++++|+|.+
T Consensus 51 -----------------~~-----------------------------~~~~i~~i~~~~-~~~~~~~~n~G~~~a~N~g 83 (255)
T 1qg8_A 51 -----------------FL-----------------------------NDNRVRFYQSDI-SGVKERTEKTRYAALINQA 83 (255)
T ss_dssp -----------------GG-----------------------------GSTTEEEEECCC-CSHHHHHSSCHHHHHHHHH
T ss_pred -----------------Hh-----------------------------hcCCEEEEeccc-ccccccccccCHHHHHHHH
Confidence 00 014578887751 000 135799999999
Q ss_pred HHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCceeEEEecCcccc
Q 045222 508 VRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMM-DPLLGKRVCYVQFPRRFD 561 (1049)
Q Consensus 508 lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~-Dp~~g~~v~~VQ~PQ~F~ 561 (1049)
++ .++|+||+++|+|.++ .|++|.+++..|. +| ++++|.....+.
T Consensus 84 i~----~a~g~~i~~lD~Dd~~-~~~~l~~~~~~~~~~~----~~~~v~~~~~~~ 129 (255)
T 1qg8_A 84 IE----MAEGEYITYATDDNIY-MPDRLLKMVRELDTHP----EKAVIYSASKTY 129 (255)
T ss_dssp HH----HCCCSEEEEEETTEEE-CTTHHHHHHHHHHHCT----TCCEEEEEEEEE
T ss_pred HH----HcCCCEEEEeCCCCcc-ChHHHHHHHHHHHhCC----CceEEEeceEEE
Confidence 99 4799999999999995 8999999998775 56 677887776655
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.49 E-value=5.4e-14 Score=163.24 Aligned_cols=113 Identities=14% Similarity=0.078 Sum_probs=91.4
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhh
Q 045222 348 PSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKI 427 (1049)
Q Consensus 348 ~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~ 427 (1049)
+..+|.|+|+||+|| |+...+.+||.|+++..||...++|+|+|||+++.|.+.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH----------------------
Confidence 357999999999999 8865899999999999999766799999999997432100
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHH
Q 045222 428 DYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNAL 507 (1049)
Q Consensus 428 ~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~ 507 (1049)
+ ...|++.++..++ ..++++|+|.+
T Consensus 117 ------------------------~--------------------------~~~~~v~vi~~~~-----n~G~~~A~N~G 141 (501)
T 2ffu_A 117 ------------------------L--------------------------GKIEKVRVLRNDR-----REGLMRSRVRG 141 (501)
T ss_dssp ------------------------G--------------------------GGBTTEEEEECSS-----CCHHHHHHHHH
T ss_pred ------------------------H--------------------------hcCCCEEEEECCC-----CcCHHHHHHHH
Confidence 0 0135688887665 34699999999
Q ss_pred HHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 045222 508 VRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDP 545 (1049)
Q Consensus 508 lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp 545 (1049)
++ .+.|+||+++|+|.. ..|++|.+++..+.+.
T Consensus 142 ~~----~A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 142 AD----AAQAKVLTFLDSHCE-CNEHWLEPLLERVAED 174 (501)
T ss_dssp HH----HCCSSEEEECCSSEE-ECTTCHHHHHHHHHHC
T ss_pred HH----hcCCCEEEEECCCcc-cCccHHHHHHHHHHhC
Confidence 99 478999999999999 5799999999877543
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.44 E-value=1.7e-13 Score=162.57 Aligned_cols=125 Identities=23% Similarity=0.263 Sum_probs=97.0
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhh
Q 045222 349 SKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKID 428 (1049)
Q Consensus 349 ~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~ 428 (1049)
...|.|+|+||||| ++ ..+.++|.|+++++||. ++|+|+|||+++.|.+.+.
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~~--~eiivvdd~S~d~t~~~~~---------------------- 423 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTITD--LEVCICDDGSTDDTLRILQ---------------------- 423 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCCS--EEEEEEEESCSSSHHHHHH----------------------
T ss_pred ccCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCCC--eEEEEEECcCChhHHHHHH----------------------
Confidence 45789999999999 76 57899999999999985 8999999999985422111
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHH
Q 045222 429 YLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALV 508 (1049)
Q Consensus 429 ~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~l 508 (1049)
+|.+ ..|++.++. ++ ..++++|+|.++
T Consensus 424 -------------------~~~~----------------------------~~~~i~~~~-~~-----n~G~~~a~n~g~ 450 (625)
T 2z86_A 424 -------------------EHYA----------------------------NHPRVRFIS-QK-----NKGIGSASNTAV 450 (625)
T ss_dssp -------------------HHHT----------------------------TCTTEEEEE-EC-----CCCHHHHHHHHH
T ss_pred -------------------HHHh----------------------------hCCcEEEEe-CC-----CCCHHHHHHHHH
Confidence 1100 125678885 32 357999999999
Q ss_pred HhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEEecCccccCC
Q 045222 509 RVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYVQFPRRFDGI 563 (1049)
Q Consensus 509 rvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~VQ~PQ~F~ni 563 (1049)
+ .++|+||+++|+|.+ ..|++|.+++..| .+| +++.|.....+.+.
T Consensus 451 ~----~a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~~~~ 497 (625)
T 2z86_A 451 R----LCRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL----SLACVYTTNRNIDR 497 (625)
T ss_dssp H----HCCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----TCSEEEEEEEEECT
T ss_pred H----hcCCCEEEEECCCcc-cChhHHHHHHHHHHhCC----CeeEEEeeeEEECC
Confidence 9 479999999999999 5899999999766 566 68888877665543
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=99.21 E-value=4.4e-11 Score=131.89 Aligned_cols=124 Identities=12% Similarity=-0.005 Sum_probs=89.3
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhh
Q 045222 350 KLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDY 429 (1049)
Q Consensus 350 ~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~ 429 (1049)
.-|.|+|+||+|| |+ ..+.++|.|++++.||. ..+|+|+|||+++.|.+.+.+.. . +
T Consensus 46 ~~~~vSViIp~yN---~~-~~l~~~l~sl~~q~~~~-~~eiivVDdgS~D~t~~~~~~~~---~------------~--- 102 (329)
T 3ckj_A 46 AGRTISVVLPALD---EE-DTIGSVIDSISPLVDGL-VDELIVLDSGSTDDTEIRAVAAG---A------------R--- 102 (329)
T ss_dssp TTCCEEEEEEESS---CT-TTHHHHHHHHGGGBTTT-BSEEEEEECSCCSSHHHHHHHTT---C------------E---
T ss_pred cCCcEEEEEeeCC---CH-HHHHHHHHHHHHhhCCC-CcEEEEEeCCCCchHHHHHHHhh---h------------h---
Confidence 4689999999999 77 47899999999999994 47899999999986533221110 0 0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHH
Q 045222 430 LKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVR 509 (1049)
Q Consensus 430 lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lr 509 (1049)
-.+++.++.+.+ .+.+|++|+|.+++
T Consensus 103 --------------------------------------------------~~~~~~~~~~~~----~n~G~~~a~n~g~~ 128 (329)
T 3ckj_A 103 --------------------------------------------------VVSREQALPEVP----IRPGKGEALWRSLA 128 (329)
T ss_dssp --------------------------------------------------EEEHHHHCTTSC----CCCSHHHHHHHHHH
T ss_pred --------------------------------------------------hccceeeeccCC----CCCCHHHHHHHHHH
Confidence 000011111111 34679999999999
Q ss_pred hccCCCCCCEEEEecCCCCCChHHHHHHHHHh-hcCCCCCceeEEEecCc
Q 045222 510 VSAVLTNSPYLLNLDCDHYINNSKALREAMCF-MMDPLLGKRVCYVQFPR 558 (1049)
Q Consensus 510 vSav~tng~~Il~lDaD~~~~~p~~Lr~~m~f-f~Dp~~g~~v~~VQ~PQ 558 (1049)
.++|+||+++|+|.+...|++|.+++.. +.+| ++++|+...
T Consensus 129 ----~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~----~~~~v~g~~ 170 (329)
T 3ckj_A 129 ----ASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGD----GVHLVKSFY 170 (329)
T ss_dssp ----HCCCSEEEECCTTEESCCTTHHHHHHHHHHSCS----SCCEEEEEE
T ss_pred ----hCCCCEEEEECCCCCCcChHHHHHHHHHHHhCC----CccEEEEEe
Confidence 4789999999999983378999999976 5677 577777643
No 11
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=99.15 E-value=5.5e-11 Score=143.64 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=89.8
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCe-EEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhh
Q 045222 348 PSKLMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKV-SCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQK 426 (1049)
Q Consensus 348 ~~~lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl-~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k 426 (1049)
+..-|.|+|+||||| ++ ..+.++|.|++++.|+.++. +|+|+|||+++.+ ++.+
T Consensus 176 ~~~~pkVSVVIptYN---~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s-----~~~~---------------- 230 (657)
T 4fix_A 176 APGTANIAVGIPTFN---RP-ADCVNALRELTADPLVDQVIGAVIVPDQGERKVR-----DHPD---------------- 230 (657)
T ss_dssp CCSCCCEEEECCBSS---CH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGG-----GSTT----------------
T ss_pred CCCCCeEEEEEEecC---CH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCCcc-----chHH----------------
Confidence 345689999999999 76 58899999999999965555 8999999998621 0000
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHH
Q 045222 427 IDYLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNA 506 (1049)
Q Consensus 427 ~~~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~ 506 (1049)
+ .+..++. -|++.|+..+ +.+.|+|.|.
T Consensus 231 -----------~-------~e~~~~~----------------------------~~~I~vI~~~------N~G~a~a~N~ 258 (657)
T 4fix_A 231 -----------F-------PAAAARL----------------------------GSRLSIHDQP------NLGGSGGYSR 258 (657)
T ss_dssp -----------H-------HHHHHHH----------------------------GGGEEEEECC------CCHHHHHHHH
T ss_pred -----------H-------HHHHHhc----------------------------CCCEEEEECC------CCCHHHHHHH
Confidence 0 0000110 0347888643 3578999999
Q ss_pred HHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCceeEEEec
Q 045222 507 LVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMM-DPLLGKRVCYVQF 556 (1049)
Q Consensus 507 ~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~-Dp~~g~~v~~VQ~ 556 (1049)
+++...-.++++||+++|.|.+ +.|++|.+++.++. +| +++.|+.
T Consensus 259 Gl~~A~g~~~~dyIlfLD~D~~-~~pd~L~~ll~~l~~~~----~~~~vg~ 304 (657)
T 4fix_A 259 VMYEALKNTDCQQILFMDDDIR-LEPDSILRVLAMHRFAK----APMLVGG 304 (657)
T ss_dssp HHHHHHHHCCCSEEEEECSSEE-ECTHHHHHHHHHHHHBS----SCCEEEE
T ss_pred HHHHHHhcCCCCEEEEECCCCc-cChhHHHHHHHHHHhCC----CcEEEEe
Confidence 9984311237899999999999 57999999998875 44 4565654
No 12
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=99.15 E-value=3.7e-12 Score=154.74 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhhhh
Q 045222 351 LMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKIDYL 430 (1049)
Q Consensus 351 lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~~l 430 (1049)
+|.|+|+||||| ++ ..+.++|.|+++++||. ++|+|+|||+++.|.+.+.+.+
T Consensus 1 Mp~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~~--~EIIVVDDgStD~t~~il~~~~--------------------- 53 (729)
T 3l7i_A 1 MNKLTIIVTYYN---AE-EYITGCLESIKQQRTQD--FNLIIVNDGSTDQSKKLMDEAI--------------------- 53 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCC---CH-HHHHHHHHHHHhCCCCC--eEEEEEECCCCCcHHHHHHHHH---------------------
Confidence 478999999999 76 58899999999999994 7899999999985533221110
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEeccCCCCCCCCChHHHHHHHHHh
Q 045222 431 KDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSREKRPGFNNHKKAGAMNALVRV 510 (1049)
Q Consensus 431 k~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRekrpg~~h~~KAGALN~~lrv 510 (1049)
+.|. +++.++..++ +.++++|.|.+++
T Consensus 54 ----------------~~~~-------------------------------~~i~~i~~~~-----n~G~~~arN~gi~- 80 (729)
T 3l7i_A 54 ----------------KDYD-------------------------------KNIRFIDLDE-----NSGHAHARNIALE- 80 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------HhCC-------------------------------CCEEEEECCC-----CCCHHHHHHHHHH-
Confidence 0000 2466666553 3568999999999
Q ss_pred ccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 045222 511 SAVLTNSPYLLNLDCDHYINNSKALREAMCFMMDP 545 (1049)
Q Consensus 511 Sav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~Dp 545 (1049)
.++|+||+++|+|.+ ..|++|.+++..+.++
T Consensus 81 ---~A~gdyI~flD~Dd~-~~p~~l~~l~~~l~~~ 111 (729)
T 3l7i_A 81 ---EVETPYFMFLDADDE-LASYAITFYLEKFNNT 111 (729)
T ss_dssp -----------------------------------
T ss_pred ---hccCCEEEEECCCCC-CChhHHHHHHHHhcCC
Confidence 579999999999999 5899999999888754
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.97 E-value=2.5e-10 Score=124.95 Aligned_cols=53 Identities=9% Similarity=-0.106 Sum_probs=40.6
Q ss_pred cchHHHHHHHHHCCcEEEEecCCCCcc----------ccCCCcCHHHHHhhhheecccchhhh
Q 045222 747 TKDMLTGLIMHCHGWRSIYCIPDRPAF----------KGPAPINLSVCLHWVLRWALGSVEVF 799 (1049)
Q Consensus 747 TEDi~Tg~rLh~rGWrSvY~~~~~~Af----------~GlaP~tl~~~l~QR~RWA~G~lQI~ 799 (1049)
.||++.++||+.+||+..+..+...-+ .-..|+.+..+.+||.||+++.+..+
T Consensus 201 ~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 201 GEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp CHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred cchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 499999999999999877443211111 12478999999999999999999886
No 14
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=98.75 E-value=4.1e-08 Score=111.75 Aligned_cols=117 Identities=17% Similarity=0.099 Sum_probs=84.2
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHc--CCCCCCCeEEEEEcCCCChhhHHHhhhhHHHhhhCCCCchhhhhhhhh
Q 045222 351 LMPVDIFVSTVDPIKEPSLVTANTVLSILA--VDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWPRAPEWYFAQKID 428 (1049)
Q Consensus 351 lP~VDVfV~t~nP~kEpp~vv~~Tvls~la--lDYP~~kl~vyV~DDG~s~~Tf~al~Ea~~fA~~Wpr~Pe~YF~~k~~ 428 (1049)
.|.|+|+||||| |. ..+.++|.++++ .+||.+ .+|+|+|||++|.|.+.+.+.
T Consensus 93 ~p~vSVVIP~yN---e~-~~l~~~l~sl~~~l~~~~~~-~EIIVVDDgStD~T~~i~~~~-------------------- 147 (387)
T 3f1y_A 93 GLTVSAVLPSRN---VA-DTVGGIIDEIHALNERAPLI-DQILVVDADSEDGTAGVAASH-------------------- 147 (387)
T ss_dssp TCCEEEEEEESS---CT-TTHHHHHHHHHHHHHHSCCC-SEEEEEECSCSSSHHHHHHHT--------------------
T ss_pred CCeEEEEEEcCC---CH-HHHHHHHHHHHHHHhcCCCC-eEEEEEcCcCCccHHHHHHHh--------------------
Confidence 688999999999 77 578889999987 477753 699999999998653322110
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----CCCCCCCCChHHHH
Q 045222 429 YLKDKVLASFVRERRAMKREYEQFKVRINALVAKAQIIFLGPSVGLDTDGNELPRLVYVSRE----KRPGFNNHKKAGAM 504 (1049)
Q Consensus 429 ~lk~~~~~~fv~err~~kr~yee~kvRIn~l~~~a~kv~lg~~g~~d~~~~~lP~lvYvsRe----krpg~~h~~KAGAL 504 (1049)
+ ..++.+. ..+ ...+|++|+
T Consensus 148 ----------------------------------------~--------------~~v~~~~~~~i~~~--~n~G~g~A~ 171 (387)
T 3f1y_A 148 ----------------------------------------G--------------AEVYSENELMSGYG--DAHGKGDAM 171 (387)
T ss_dssp ----------------------------------------T--------------CEEEEGGGTTGGGC--SCCSHHHHH
T ss_pred ----------------------------------------C--------------chhcccceeEecCC--ccCCHHHHH
Confidence 0 0111111 001 246799999
Q ss_pred HHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCceeEEEec
Q 045222 505 NALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFM-MDPLLGKRVCYVQF 556 (1049)
Q Consensus 505 N~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff-~Dp~~g~~v~~VQ~ 556 (1049)
|.+++ .++|+||+++|+|....+|++|.+++..+ .+| ++.+|..
T Consensus 172 n~G~~----~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p----~~d~v~G 216 (387)
T 3f1y_A 172 WRALS----VTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVP----GVRFVKA 216 (387)
T ss_dssp HHHTT----TCCSSEEEECCTTCSSCCTHHHHTTHHHHHHST----TCCEEEE
T ss_pred HHHHH----hcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCC----CceEEEE
Confidence 99999 57899999999999833899999999766 566 4555554
No 15
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=98.33 E-value=1.7e-06 Score=91.75 Aligned_cols=45 Identities=7% Similarity=0.084 Sum_probs=38.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhcC-----CCCCceeEEE
Q 045222 501 AGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMMD-----PLLGKRVCYV 554 (1049)
Q Consensus 501 AGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~D-----p~~g~~v~~V 554 (1049)
|.|+|.+++ .++|+||+++|+|.++ ++++|.+++-++.. | +++.|
T Consensus 63 a~a~N~Gi~----~A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~----~vg~v 112 (249)
T 2nxv_A 63 FSWHKQMLP----RCKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADP----KWLVA 112 (249)
T ss_dssp TTHHHHHGG----GCCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCT----TEEEE
T ss_pred HHHHHHHHH----hcCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCC----CeeEE
Confidence 678999999 5789999999999995 89999999988763 7 56655
No 16
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=97.42 E-value=0.00056 Score=78.25 Aligned_cols=43 Identities=16% Similarity=-0.009 Sum_probs=35.3
Q ss_pred CCChHHHHHHHH----HhccCCCCCCEEEEecCCCCCChHHHHHHHHHhhc
Q 045222 497 NHKKAGAMNALV----RVSAVLTNSPYLLNLDCDHYINNSKALREAMCFMM 543 (1049)
Q Consensus 497 h~~KAGALN~~l----rvSav~tng~~Il~lDaD~~~~~p~~Lr~~m~ff~ 543 (1049)
..+|..|+|+++ + .++|++|+++|||..-.+|+.+.+++..+.
T Consensus 73 n~GkG~Al~~G~~~Al~----~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 73 RPGKGDGMNTALRYFLE----ETQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSSHHHHHHHHHHHHHH----HCCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----hCCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 468999999999 5 378999999999995237899999887553
No 17
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.06 E-value=0.00076 Score=60.23 Aligned_cols=52 Identities=27% Similarity=0.832 Sum_probs=43.3
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
...|.||-|.+.++.- .|.+| .||.-.|+.|+.--.++++..||.|+++|..
T Consensus 11 ~~~CpICle~~~~~d~---~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDI---NFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCBCTTTCCBCCTTTT---TCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCcCCccCccCccccc---ccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4589999998754433 68889 8999999999986666788999999999974
No 18
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=97.01 E-value=0.0026 Score=72.74 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHhccCCCCCCEEEEecCCCCCChHHHHHHHH-Hhh
Q 045222 498 HKKAGAMNALVRVSAVLTNSPYLLNLDCDHYINNSKALREAM-CFM 542 (1049)
Q Consensus 498 ~~KAGALN~~lrvSav~tng~~Il~lDaD~~~~~p~~Lr~~m-~ff 542 (1049)
++|..||=+++.+.. ..++++|+++|||-++ |..+.+.+ +|.
T Consensus 143 ~GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~i--P~~v~~~~kgy~ 185 (394)
T 2zu9_A 143 SGKGEGMLVGLLLAK-AIGAEYVGFVDADNYI--PGAVNEYVKDYA 185 (394)
T ss_dssp CSHHHHHHHHHHHHH-HTTCSEEEECCSCBSC--HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh-hCCCCEEEEEeCCCCC--HHHHHHHHHHhh
Confidence 489999999998531 1189999999999974 77776655 344
No 19
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=96.89 E-value=0.0015 Score=73.47 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=38.2
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCh
Q 045222 351 LMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 399 (1049)
Q Consensus 351 lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~ 399 (1049)
|+.+.|+|+||| =| . +.+++.|++++..+.++..|+|+|||+.+
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 456889999999 77 6 99999999999977777889999999864
No 20
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=96.71 E-value=0.013 Score=66.03 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=34.8
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCChhh
Q 045222 351 LMPVDIFVSTVDPIKEPSLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 401 (1049)
Q Consensus 351 lP~VDVfV~t~nP~kEpp~vv~~Tvls~lalDYP~~kl~vyV~DDG~s~~T 401 (1049)
+..+.|+||+|| |.. +++.+++++-|.. .+|+|+|||+.|.|
T Consensus 52 ~~klSIVVPvYN---Ee~----~lLesVl~qi~~d--~eIIlVdDGS~D~s 93 (391)
T 2wvl_A 52 LEQTAIVVPTRN---ERL----KLLEGVLSGIPHE--ALILVASNSSPDRF 93 (391)
T ss_dssp HTTEEEEEEESS---CCH----HHHHHHHHTSCTT--SEEEEEECCCHHHH
T ss_pred HhceEEEEeccC---cHH----HHHHHHHhcCCCC--ceEEEEECCCCCCh
Confidence 567999999999 885 3688888888763 78999999998755
No 21
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.62 E-value=0.38 Score=40.20 Aligned_cols=56 Identities=27% Similarity=0.663 Sum_probs=39.8
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.....|.||-+...-...+++..+.- .|+--.|+.|.+--.+ .+..||-|++++.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLK-NANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHH-HCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHH-cCCCCCCCCCccCc
Confidence 34568999999875443324444444 7899999999964333 36899999998753
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.97 E-value=0.77 Score=41.00 Aligned_cols=55 Identities=18% Similarity=0.463 Sum_probs=39.4
Q ss_pred ccCCcccCCcCCCCcCCCCCCCceeccCCCC---CccchhhHHHHHhh-cCCCCCCCcccccc
Q 045222 33 QLGGQKCHICGDDVGLPVDGGDPFVACNECA---FPICRTCYEYERRE-GNQVCPQCKTRFRR 91 (1049)
Q Consensus 33 ~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~---FpvCRpCYeyerke-g~q~CPqCkt~Ykr 91 (1049)
......|.||-++.. ++ +.+..+| .|. --+.+.|.+-=.+. ++..||.||++|.-
T Consensus 12 ~~~~~~C~IC~~~~~--~~-~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGD--DE-SPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCC--SS-SCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCcccc--CC-CeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 345669999998743 33 4567788 563 67999999744444 44799999999973
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=88.43 E-value=0.94 Score=39.10 Aligned_cols=53 Identities=21% Similarity=0.496 Sum_probs=37.1
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
.....|.||-+.+...+. .+.- .|+--.|+.|.. +.-..+..||-|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~----~~~~-~C~H~fc~~Ci~-~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGES----VRQL-PCNHLFHDSCIV-PWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSC----EEEC-TTSCEEETTTTH-HHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCC----EEEe-CCCCeecHHHHH-HHHHcCCcCcCcCCccCCc
Confidence 345699999998743322 2222 488889999996 3334458999999998643
No 24
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=88.23 E-value=0.23 Score=41.97 Aligned_cols=56 Identities=27% Similarity=0.654 Sum_probs=40.0
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.....|.||-+.+.....+++..+.- .|+--.|+.|.+--. ..+..||.|++++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSL-KNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHH-HHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHH-HcCCCCCCCCCccCh
Confidence 34568999999975543314444444 799999999996333 344799999999863
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=87.50 E-value=0.38 Score=41.61 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=37.1
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.-.|.||.+.. .+ +.+. .||.-.|+.|.+--.+.++..||.|++++.
T Consensus 8 ~~~C~IC~~~~---~~---Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELM---KD---PVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCC---SS---EEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cCCCCCccccc---cC---CEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 45899999864 12 4343 599999999998667777899999999885
No 26
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=87.09 E-value=0.56 Score=39.69 Aligned_cols=50 Identities=24% Similarity=0.598 Sum_probs=36.2
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCC---ccchhhHHHHHhh-cCCCCCCCccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAF---PICRTCYEYERRE-GNQVCPQCKTRFR 90 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~F---pvCRpCYeyerke-g~q~CPqCkt~Yk 90 (1049)
.+..|.||-++ .+ +++..+| .|.= -|=+.|.+-=.++ ++..||.||++|.
T Consensus 5 ~~~~CrIC~~~----~~-~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEE----LG-NERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEE----CS-CCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecC----CC-CceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45689999876 23 4578888 5743 4557788644553 6789999999996
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.88 E-value=0.39 Score=40.37 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=36.5
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
...|.||.+... + +.+ -.|+--.|+.|.+--.+.++..||.|++++..
T Consensus 15 ~~~C~IC~~~~~---~---p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLC---S---PKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEES---S---CCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhc---C---eeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 458999998752 2 222 26888899999976665677899999999864
No 28
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.76 E-value=0.33 Score=43.39 Aligned_cols=60 Identities=27% Similarity=0.547 Sum_probs=45.4
Q ss_pred cccCCceEEEeeccCccCCCccCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHH
Q 045222 10 GSHNRNELIIIRRDRESAARPLQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYE 74 (1049)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeye 74 (1049)
||.-.|||..++.-+. ..+-++-+...|..|+...|+--+ --+.|..|...||+.|-.+.
T Consensus 1 ~~~~~~eL~elrrkga--k~~s~~~~~r~CarC~~~LG~l~~---~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 1 GSSGSSGLLEIKRKGA--KRGSQHYSDRTCARCQESLGRLSP---KTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp CCCCCCCCCCCCCCCS--CSCCTTCCCCBCSSSCCBCSSSCT---TTSEETTTTEECCTTSEEEC
T ss_pred CchhHHHHHHHHHccc--cCcCcCCCccchhhhCcccccccc---CCCcCcccChhhcccccccC
Confidence 4555899998886432 123345666799999999999855 66889999999999997644
No 29
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=86.24 E-value=0.37 Score=47.90 Aligned_cols=48 Identities=29% Similarity=0.731 Sum_probs=37.5
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
..|.||-+.+. + + +.+..|+--.|+.|.+--.+.++..||.|++++..
T Consensus 55 ~~C~IC~~~~~---~---p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLK---N---T-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCS---S---E-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhh---C---c-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 38999988753 1 3 23336999999999987777778999999999853
No 30
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=84.58 E-value=1.1 Score=37.43 Aligned_cols=49 Identities=24% Similarity=0.593 Sum_probs=34.4
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
...|.||-+... + +.+ .-.|+--.|+.|..-- -..+..||-|+++....
T Consensus 5 ~~~C~IC~~~~~---~---~~~-~~~C~H~fc~~Ci~~~-~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 5 AERCPICLEDPS---N---YSM-ALPCLHAFCYVCITRW-IRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCSSCCSCCC---S---CEE-ETTTTEEESTTHHHHH-HHHSCSTTTTCCCCCCE
T ss_pred CCCCeeCCcccc---C---CcE-ecCCCCeeHHHHHHHH-HhCcCcCcCCChhhHhh
Confidence 458999999853 1 111 2247888999999633 34458999999998643
No 31
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.57 E-value=1.7 Score=38.05 Aligned_cols=52 Identities=25% Similarity=0.427 Sum_probs=37.0
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhh--cCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERRE--GNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerke--g~q~CPqCkt~Ykr 91 (1049)
...|.||-+....+.. ..+.- .|+-..|+.|.+--.+. +...||.|+++++.
T Consensus 15 ~~~C~IC~~~~~~~~~---~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTEEQL---RPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCTTSS---CEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCccCCccccccCC---CeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4589999988643321 23444 68999999999754443 35899999999853
No 32
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=84.53 E-value=1.2 Score=35.78 Aligned_cols=49 Identities=16% Similarity=0.453 Sum_probs=35.1
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRF 89 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Y 89 (1049)
...|.||-+++... +..+....|+--.|+.|.. +.-..+..||-|++++
T Consensus 5 ~~~C~IC~~~~~~~----~~~~~~~~C~H~f~~~Ci~-~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELEDG----EEARFLPRCGHGFHAECVD-MWLGSHSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCTT----SCCEECSSSCCEECTTHHH-HTTTTCCSCSSSCCCS
T ss_pred CCcCccCCccccCC----CceEECCCCCCcccHHHHH-HHHHcCCcCcCCCCEe
Confidence 45899999987433 2233333588899999995 4444578999999875
No 33
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=84.40 E-value=0.38 Score=39.60 Aligned_cols=54 Identities=26% Similarity=0.636 Sum_probs=38.6
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
...|.||-+...-..++++..+.- .|+--.|+.|.+--. +.+..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSL-KNANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHH-HHCSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHH-HcCCCCCCCCccCCc
Confidence 458999999875443214444444 789999999996333 337899999999863
No 34
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=84.12 E-value=1.2 Score=35.71 Aligned_cols=50 Identities=32% Similarity=0.625 Sum_probs=35.5
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRF 89 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Y 89 (1049)
....|.||-+++... ++. +....|+--.|+.|.+--.+.. ..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~~---~~~-~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS---RVV-AHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTT---TSC-EEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcCC---CcC-eEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 456899999987432 223 3333589999999997444444 8999999875
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=83.90 E-value=1.1 Score=37.49 Aligned_cols=53 Identities=23% Similarity=0.531 Sum_probs=37.0
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
...|.||-+++-.+.. ..++.- .||--.|+.|.+--...+...||.|++++.+
T Consensus 3 ~~~C~IC~~~~~~~~~--~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS--LKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSS--CCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCc--cCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3589999984322221 123333 6899999999974445677889999999964
No 36
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=83.40 E-value=0.69 Score=48.86 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=36.7
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.--.|.||.+-. -++.+. .||.-.||.|-+--.+++...||.|+++..
T Consensus 207 ~~~~c~i~~~~~------~dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELM------REPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBC------SSEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHh------cCCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 445899998864 225443 389999999998667776667999999885
No 37
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.90 E-value=0.98 Score=38.31 Aligned_cols=49 Identities=31% Similarity=0.636 Sum_probs=35.9
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHh--hcCCCCCCCcccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERR--EGNQVCPQCKTRFRR 91 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerk--eg~q~CPqCkt~Ykr 91 (1049)
....|.||-+... + +.+. .|+--.|+.|..--.+ .+...||.|++++..
T Consensus 19 ~~~~C~IC~~~~~---~---~~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ---K---PVTI--DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS---S---EEEC--TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC---C---eEEc--CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3458999998753 2 3222 6899999999975444 356799999999864
No 38
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=82.79 E-value=0.84 Score=46.91 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=35.7
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.-.|.||++-. .| |.+.. ||.-.||.|-+--.+.+...||.|++++.
T Consensus 106 ~f~CPI~~elm---~D---PV~~~--~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 106 YLCGKISFELM---RE---PCITP--SGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGBCTTTCSBC---SS---EEECT--TSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hhcccCccccC---CC---CeECC--CCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 34899998753 23 66664 99999999997666654457999999884
No 39
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=82.48 E-value=2.2 Score=35.81 Aligned_cols=53 Identities=19% Similarity=0.396 Sum_probs=36.7
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
.....|.||-+.+... +..+.- .|+--.|+.|.. +.-..+..||-|+++....
T Consensus 12 ~~~~~C~IC~~~~~~~----~~~~~~-~C~H~fc~~Ci~-~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEG----EDVRRL-PCMHLFHQVCVD-QWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSS----SCEEEC-TTSCEEEHHHHH-HHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCC----CcEEEe-CCCCHHHHHHHH-HHHHcCCCCcCcCccccCc
Confidence 3456899999987433 223333 588889999996 4333356799999988643
No 40
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=81.90 E-value=1.4 Score=40.85 Aligned_cols=58 Identities=21% Similarity=0.433 Sum_probs=39.8
Q ss_pred CcccCCcCCCCcCCC----------CCCCceeccCCCCCccchhhHHHHHh----hcCCCCCCCcccccccc
Q 045222 36 GQKCHICGDDVGLPV----------DGGDPFVACNECAFPICRTCYEYERR----EGNQVCPQCKTRFRRLK 93 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~----------~~G~~FvaC~eC~FpvCRpCYeyerk----eg~q~CPqCkt~Ykr~k 93 (1049)
...|.||-+++...+ .+....+..-.|+=-.|+.|.+-=.+ .....||-|++.|...+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 458999998875432 10112333456888999999974444 45679999999997554
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=81.17 E-value=1.2 Score=42.19 Aligned_cols=47 Identities=26% Similarity=0.660 Sum_probs=35.4
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
-.|.||-+..- + +.+. .|+--.|+.|..--.+.+...||.|++++..
T Consensus 53 ~~C~IC~~~~~---~---p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF---R---PITT--VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS---S---EEEC--TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc---C---cEEe--eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999998753 2 3222 6899999999975555555699999999964
No 42
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.87 E-value=0.68 Score=39.83 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=36.3
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
....|.||-+++.. ++..+.- .|+--.|+.|..--. ..+..||-|+.++...
T Consensus 22 ~~~~C~IC~~~~~~----~~~~~~l-~C~H~fh~~Ci~~w~-~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFES----RQLLRVL-PCNHEFHAKCVDKWL-KANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCB----TCEEEEE-TTTEEEETTHHHHHH-HHCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCC----CCeEEEE-CCCCHhHHHHHHHHH-HcCCcCcCcCCcCCCC
Confidence 45689999998643 2222222 488889999996333 3457999999988654
No 43
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.38 E-value=1.8 Score=37.44 Aligned_cols=48 Identities=23% Similarity=0.776 Sum_probs=34.9
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHh-----hcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERR-----EGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerk-----eg~q~CPqCkt~Ykr 91 (1049)
...|.||-+...- +.+ . .|+-..|+.|..--.+ .+...||.|++++..
T Consensus 19 ~~~C~IC~~~~~~------p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQ------PLS-L-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSS------CBC-C-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCC------cee-C-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4589999998621 222 2 5888999999974333 357899999999863
No 44
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=79.53 E-value=1.9 Score=37.11 Aligned_cols=49 Identities=27% Similarity=0.542 Sum_probs=34.7
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhh-cCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERRE-GNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerke-g~q~CPqCkt~Ykr 91 (1049)
...|.||-+... + +.+ -..|+--.|+.|.+--.+. +...||.|++++.+
T Consensus 15 ~~~C~IC~~~~~---~---p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 15 ELLCLICKDIMT---D---AVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGSCSSSCCCCT---T---CEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCcCCChHHh---C---CeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 458999988752 2 222 3349999999999755443 44799999997654
No 45
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=79.01 E-value=1.2 Score=40.67 Aligned_cols=47 Identities=26% Similarity=0.674 Sum_probs=36.7
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
-.|.||-+..- + -|.|-.|+--.|+.|..--.+.....||.|++++.
T Consensus 23 ~~C~IC~~~~~---~----p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLR---D----ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCS---S----EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCcccc---C----ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 48999999862 2 24556799999999997555555579999999985
No 46
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=78.06 E-value=2 Score=37.11 Aligned_cols=48 Identities=27% Similarity=0.743 Sum_probs=34.8
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhh-----cCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERRE-----GNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerke-----g~q~CPqCkt~Ykr 91 (1049)
...|.||-+...- + +.. .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 19 ~~~C~IC~~~~~~------p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKE------P-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSS------C-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCc------c-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4589999988521 2 223 48889999999754444 47899999998853
No 47
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=77.41 E-value=1.4 Score=39.80 Aligned_cols=47 Identities=19% Similarity=0.545 Sum_probs=34.3
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
..|.||.+...- +.+ ...|+--.|+.|.+-- -..+..||.|++++..
T Consensus 23 ~~C~IC~~~~~~------p~~-~~~CgH~fC~~Ci~~~-~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNI------AMI-IPQCSHNYCSLCIRKF-LSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSS------EEE-CTTTCCEEEHHHHHHH-HTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCC------cCE-ECCCCCHhhHHHHHHH-HHCCCCCCCCCCcCCh
Confidence 489999987521 222 2358999999999633 3456899999999864
No 48
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=77.01 E-value=0.3 Score=49.02 Aligned_cols=51 Identities=22% Similarity=0.567 Sum_probs=43.8
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTR 88 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~ 88 (1049)
+...|.+|+...|+-.+ .-+.|..|...||+-|-.|-++++.=.|--|-..
T Consensus 67 ~~~~C~~C~~~fg~l~~---~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLN---SRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSS---CCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccC---CCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 56799999999998866 6899999999999999988888887888777554
No 49
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.80 E-value=4.4 Score=34.43 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=35.0
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
...|.||-+...- +.+ ...|+--.|+.|.+--.+. ...||.|++++...
T Consensus 15 ~~~C~IC~~~~~~------p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID------ATT-ITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS------CEE-CSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC------cCE-ECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcc
Confidence 4589999887521 222 2358888899999744443 68999999998753
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.67 E-value=2.7 Score=35.76 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=36.0
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
....|.||-+++...+ ..+.. .|+-..|+.|..--.+ .+..||-|++++..
T Consensus 14 ~~~~C~IC~~~~~~~~----~~~~~-~C~H~f~~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRD----ELGIC-PCKHAFHRKCLIKWLE-VRKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSS----CEEEE-TTTEEEEHHHHHHHHH-HCSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCC----cEEEc-CCCCEecHHHHHHHHH-cCCcCCCcCccccc
Confidence 3558999999964332 23333 4888899999963333 34699999998864
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=76.55 E-value=1.8 Score=38.69 Aligned_cols=46 Identities=9% Similarity=-0.024 Sum_probs=34.7
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.-.|.||++-. .| +.+.- ||.-.||.|-+--.+ ++..||.|++++.
T Consensus 14 ~~~CpI~~~~m---~d---PV~~~--cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 14 EFRDPLMDTLM---TD---PVRLP--SGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTBCTTTCSBC---SS---EEECT--TSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred heECcccCchh---cC---CeECC--CCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 45899998753 22 54443 899999999975555 4689999999885
No 52
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.89 E-value=3.8 Score=35.57 Aligned_cols=46 Identities=22% Similarity=0.546 Sum_probs=34.3
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
...|.||-+.. .+ +.+ -.|+--.|+.|..--. +....||.|++++.
T Consensus 15 ~~~C~IC~~~~---~~---p~~--~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAF---QN---PVV--TKCRHYFCESCALEHF-RATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBC---CS---EEE--CTTSCEEEHHHHHHHH-HHCSBCSSSCCBCC
T ss_pred CCCCcCCCchh---cC---eeE--ccCCCHhHHHHHHHHH-HCCCcCCCcCcccc
Confidence 45899998886 22 333 2688889999996444 44789999999985
No 53
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=75.69 E-value=2.1 Score=38.00 Aligned_cols=48 Identities=21% Similarity=0.476 Sum_probs=34.1
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHh-hcCCCCCCCccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERR-EGNQVCPQCKTRFR 90 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerk-eg~q~CPqCkt~Yk 90 (1049)
.-.|.||.+..- .- +..+ .|+--.|+.|.+--.+ .+...||.|++++.
T Consensus 13 ~~~C~IC~~~~~--~p---~~~~--~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMT--DA---VVIP--CCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECS--SC---EECT--TTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhc--Cc---eECC--CCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 458999998652 11 2233 3999999999974443 34579999999873
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=75.28 E-value=1.7 Score=40.12 Aligned_cols=46 Identities=9% Similarity=-0.019 Sum_probs=34.8
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.-.|.||++-. .| +.+.- ||.-.||.|-+--.+ ++..||.|+.++.
T Consensus 29 ~~~CpI~~~~m---~d---PV~~~--cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 29 EFRDPLMDTLM---TD---PVRLP--SGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTBCTTTCSBC---SS---EEEET--TTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred hhCCcCccCcc---cC---CeECC--CCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 45999998753 22 55543 899999999975554 5789999999884
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=73.60 E-value=2.3 Score=39.19 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=34.1
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCC-CccchhhHHHHHhhcCCCCCCCccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECA-FPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~-FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.-.|.||.+-. . | +.+. .|+ .-.||.|-+--.++ +..||.|++++.
T Consensus 22 ~~~CpI~~~~m-~--d---PV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTLM-C--D---PVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSBC-S--S---EEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCccccc-c--C---CeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 45899998753 2 2 4443 478 99999999755554 689999999885
No 56
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.56 E-value=3.6 Score=34.90 Aligned_cols=49 Identities=18% Similarity=0.404 Sum_probs=34.7
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.....|.||-+.+.. - +.. .|+--.|+.|.. +.-..+..||.|++++..
T Consensus 13 ~~~~~C~IC~~~~~~--~---~~~---~CgH~fC~~Ci~-~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH--P---VSL---PCKHVFCYLCVK-GASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS--E---EEE---TTTEEEEHHHHH-HCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC--C---EEc---cCCCHHHHHHHH-HHHHCCCcCcCcCchhCH
Confidence 455689999988521 1 223 478889999996 433344899999999863
No 57
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=73.46 E-value=2.4 Score=39.83 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=35.9
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
-.|.||.+..- + + |.. .|+=-.|+.|..--.+.++..||.|+++...
T Consensus 19 ~~C~IC~~~~~---~---p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALR---E---A-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCS---S---E-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhc---C---e-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 48999998752 2 3 223 6999999999976666666699999998854
No 58
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=71.68 E-value=3 Score=41.20 Aligned_cols=47 Identities=23% Similarity=0.635 Sum_probs=35.3
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
..|.||-+..- + +.+ . .|+--.|+.|..--.+.+...||.|++++..
T Consensus 79 ~~C~IC~~~~~---~---pv~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVY---Q---PVT-T-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCS---S---EEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhc---C---CEE-c-CCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 48999988652 2 333 2 6898999999976666666689999999864
No 59
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.38 E-value=1.7 Score=38.51 Aligned_cols=47 Identities=19% Similarity=0.571 Sum_probs=34.4
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHH-HhhcCCCCCCCccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYE-RREGNQVCPQCKTRFR 90 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeye-rkeg~q~CPqCkt~Yk 90 (1049)
..|.||-+.|... ..|..|+-..=..|..-= +..+++.||.|++...
T Consensus 16 ~~C~IC~~~i~~g-------~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQG-------QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSS-------EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccC-------CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4899999998632 347788777777887522 3445589999998874
No 60
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=71.32 E-value=1.3 Score=41.33 Aligned_cols=48 Identities=23% Similarity=0.732 Sum_probs=35.6
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.-.|.||-+..- + +.+. .|+--.|+.|..--.+.+...||.|++++..
T Consensus 15 ~~~C~iC~~~~~---~---p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV---E---PVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS---S---CEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC---c---eeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 348999998753 1 3222 6899999999964455667899999999863
No 61
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.05 E-value=4.2 Score=35.77 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=38.1
Q ss_pred CCcccCCcCCCCcCC--------CCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 35 GGQKCHICGDDVGLP--------VDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~--------~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
....|.||-+++.-. .. ++.-+.-..|+=--|+.|.+ +--+.++.||-|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~-~~~~~~~~~C~H~FH~~Ci~-~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQ-EDCVVVWGECNHSFHNCCMS-LWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCT-TTCCEEEETTSCEEEHHHHH-HHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCC-CceEEEeCCCCCccChHHHH-HHHHhCCCCCCcCCCcch
Confidence 456899999997542 12 33333333689999999996 444445799999999864
No 62
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=69.84 E-value=2.6 Score=41.32 Aligned_cols=37 Identities=27% Similarity=0.748 Sum_probs=30.8
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHH
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEY 73 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYey 73 (1049)
.+...|.+|+...|+-.+ .-+.|..|...||+-|-.+
T Consensus 53 ~~~~~C~~C~~~~g~l~~---~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGS---ASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp CSSSBCSSSCCBCSTTSC---CEEECTTTCCEEETTSEEE
T ss_pred CCCccccccCCCcccccC---CCCCCCCCCcccccccCCc
Confidence 456799999999987654 4589999999999999764
No 63
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=67.23 E-value=4.6 Score=36.91 Aligned_cols=47 Identities=26% Similarity=0.685 Sum_probs=33.5
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHh--hcCCCCCCCcccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERR--EGNQVCPQCKTRFRR 91 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerk--eg~q~CPqCkt~Ykr 91 (1049)
..|.||-+..- + +.+ . .|+--.|+.|..--.+ .+...||.|++++..
T Consensus 22 ~~C~IC~~~~~---~---p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIK---E---PVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCS---S---CCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhc---C---eEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 48999998752 2 222 2 5899999999974444 334689999998864
No 64
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=66.84 E-value=3.1 Score=38.25 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=34.6
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.-.|.||.+..- + +.+ ...|+--.|+.|..--.+ .+..||.|++.+..
T Consensus 15 ~~~C~IC~~~~~---~---p~~-~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI---D---ATT-IIECLHSFCKTCIVRYLE-TSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS---S---EEE-ETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSCS
T ss_pred cCCCccCChHHh---C---cCE-eCCCCChhhHHHHHHHHH-hCCcCcCCCccccc
Confidence 348999988752 2 333 235899999999964444 45899999999864
No 65
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=66.20 E-value=4.9 Score=37.30 Aligned_cols=48 Identities=25% Similarity=0.584 Sum_probs=36.4
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.-.|.||.+..- + +.+ . .|+--.|+.|.+--.+.+...||.|++++..
T Consensus 23 ~~~C~IC~~~~~---~---p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA---D---PVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS---S---EEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc---C---cEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 348999988752 2 333 3 6899999999976666657899999999864
No 66
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=65.41 E-value=4.3 Score=39.10 Aligned_cols=45 Identities=24% Similarity=0.691 Sum_probs=32.6
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.|.||-+..- + +.+ . .||--.|+.|.. +.-..+..||.|+++.+.
T Consensus 55 ~C~iC~~~~~---~---~~~-~-~CgH~fc~~Ci~-~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFI---E---AVT-L-NCAHSFCSYCIN-EWMKRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCS---S---EEE-E-TTSCEEEHHHHH-HHTTTCSBCTTTCCBCCC
T ss_pred CCcccCcccC---C---ceE-C-CCCCCccHHHHH-HHHHcCCcCCCCCCcCCC
Confidence 6999998752 2 222 2 488899999986 433456789999998853
No 67
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=65.32 E-value=2.1 Score=39.99 Aligned_cols=55 Identities=27% Similarity=0.679 Sum_probs=39.3
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
+...|.||-+.+.-.+..+..-+.+ .|+-..|..|.+--. +.+..||.|++.+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSL-KNANTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHH-HHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHH-HcCCCCCCCCCcCCh
Confidence 4557999998865432214445555 799999999996444 345799999999853
No 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=64.78 E-value=3.4 Score=41.08 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=37.0
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
-.|.||.+..- + + |.+ .|+--.|+.|.+--.+.+...||.|++++..
T Consensus 19 ~~C~IC~~~~~---~---p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALR---E---A-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCS---S---E-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhc---C---c-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 38999998752 2 3 346 7999999999987667776799999988854
No 69
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=64.17 E-value=3.2 Score=37.22 Aligned_cols=50 Identities=22% Similarity=0.471 Sum_probs=35.9
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
....|.||-++... |+..+.. .|+=-.|+.|.. ..-..+..||-|+.++.
T Consensus 39 ~~~~C~IC~~~~~~----~~~~~~l-~C~H~Fh~~Ci~-~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVK----GDVATEL-PCHHYFHKPCVS-IWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCT----TCEEEEE-TTTEEEEHHHHH-HHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcC----CCcEEec-CCCChHHHHHHH-HHHHcCCcCcCcCccCC
Confidence 44589999988643 3334434 388889999996 44455689999998764
No 70
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.33 E-value=3.7 Score=38.43 Aligned_cols=45 Identities=22% Similarity=0.490 Sum_probs=32.6
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.-.|.||.+... + +.+.. .||--.|+.|..--.+ ..||.|++++.
T Consensus 22 ~~~C~IC~~~~~---~---pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR---E---PVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS---S---CBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh---C---ccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 358999988752 2 33332 5899999999953222 78999999984
No 71
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=62.26 E-value=3.6 Score=38.33 Aligned_cols=56 Identities=27% Similarity=0.654 Sum_probs=39.5
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
+.-.|.||-+...-...+|+..+.- .||=--|+.|.+--. +....||.|++.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSL-KNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHH-TTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHH-HhCCCCCCCCCcCccc
Confidence 3458999999865432214444544 799999999996433 4457999999999643
No 72
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.41 E-value=6.4 Score=33.00 Aligned_cols=48 Identities=23% Similarity=0.680 Sum_probs=35.2
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
....|.||-+.... ... .|+--.|+.|.. +.-..+..||.|+++....
T Consensus 14 ~~~~C~IC~~~~~~------~~~---~CgH~fc~~Ci~-~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD------LIL---PCAHSFCQKCID-KWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS------EEE---TTTEEECHHHHH-HSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC------ccc---CCCCcccHHHHH-HHHHCcCcCCCcCCcccCC
Confidence 34589999987521 334 467778999996 4445789999999998643
No 73
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=61.00 E-value=2.1 Score=44.61 Aligned_cols=29 Identities=24% Similarity=0.608 Sum_probs=21.6
Q ss_pred cCCcccCCcCCCCcCC----CCCCCceeccCCCCCccchhhHHH
Q 045222 34 LGGQKCHICGDDVGLP----VDGGDPFVACNECAFPICRTCYEY 73 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~----~~~G~~FvaC~eC~FpvCRpCYey 73 (1049)
.+..+|++||+.|.-+ .| | =+||++|++.
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~-g----------~~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLN-G----------KPVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEET-T----------EEECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeC-C----------cEEChhhhcc
Confidence 3466899999998765 23 3 3899999963
No 74
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.64 E-value=9.1 Score=31.41 Aligned_cols=42 Identities=29% Similarity=0.668 Sum_probs=30.7
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhh--cCCCCCCC
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERRE--GNQVCPQC 85 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerke--g~q~CPqC 85 (1049)
...|.||-+... + +.+. .|+--.|+.|.+--.+. +...||.|
T Consensus 20 ~~~C~IC~~~~~---~---p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQ---K---PVTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCS---S---CEEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhC---C---eEEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 458999998753 2 3332 68999999999755543 56789988
No 75
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.34 E-value=7.8 Score=31.55 Aligned_cols=45 Identities=22% Similarity=0.651 Sum_probs=32.0
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
...|.||-+..-.. ... .|+--.|+.|..- ....||.|+++....
T Consensus 6 ~~~C~IC~~~~~~p-----~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKCP-----KLL---PCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBCC-----SCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCCe-----EEc---CCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 34799999875321 123 4777789999742 678999999998654
No 76
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=59.16 E-value=2.5 Score=36.26 Aligned_cols=48 Identities=27% Similarity=0.798 Sum_probs=33.8
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhh------cCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERRE------GNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerke------g~q~CPqCkt~Ykr 91 (1049)
...|.||-+... + +.+ . .|+--.|+.|..--.+. +...||.|++++..
T Consensus 12 ~~~C~IC~~~~~---~---p~~-l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLT---E---PLS-L-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECS---S---CCC-C-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccC---C---eeE-C-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 458999998752 1 222 2 58889999999633222 36799999999853
No 77
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.08 E-value=11 Score=32.15 Aligned_cols=45 Identities=20% Similarity=0.586 Sum_probs=32.1
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCc-cchhhHHHHHhhcCCCCCCCcccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFP-ICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~Fp-vCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
.+...|.||-|.. ..- +|++| +=- .|..|.. ..+.||-|+++...
T Consensus 13 ~~~~~C~IC~~~~--~~~---v~~pC---gH~~~C~~C~~-----~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNW---VLLPC---RHTCLCDGCVK-----YFQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC--CCC---EETTT---TBCCSCTTHHH-----HCSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC--CCE---EEECC---CChhhhHHHHh-----cCCCCCCCCcchhc
Confidence 3456899998863 112 46776 333 8999997 24899999998864
No 78
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=58.54 E-value=4.7 Score=34.00 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=33.4
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCc-cchhhHHHHHhhcCCCCCCCccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFP-ICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~Fp-vCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.....|.||-|... + -+|+.- .||=- .|..|.+ .....+..||-|+.+.+
T Consensus 6 ~~~~~C~IC~~~~~---~--~~~~~~-pCgH~~~C~~C~~-~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPK---N--GCIVHG-KTGHLMACFTCAK-KLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCS---C--EEEEET-TEEEEEECHHHHH-HHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCC---C--EEEECC-CCCChhhHHHHHH-HHHHcCCcCCCcCcchh
Confidence 34558999998731 1 145511 35655 6999997 44455688999999875
No 79
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=58.35 E-value=6.6 Score=44.89 Aligned_cols=47 Identities=26% Similarity=0.662 Sum_probs=33.3
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
..|.||-+.. .+ -+.. .|+=-.|+.|..--.+.....||-|+++...
T Consensus 333 ~~C~ICle~~---~~--pv~l---pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAEND---KD--VKIE---PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSB---CC--EEEE---TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCC---CC--eEEe---CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 5899998775 22 0233 4666669999964444477899999998865
No 80
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=56.54 E-value=4.2 Score=50.20 Aligned_cols=58 Identities=28% Similarity=0.672 Sum_probs=41.4
Q ss_pred cCCcccCCcCCCCcCCC--CCCCceeccCCCC--------------------CccchhhHH-HH----Hh--hcCCCCCC
Q 045222 34 LGGQKCHICGDDVGLPV--DGGDPFVACNECA--------------------FPICRTCYE-YE----RR--EGNQVCPQ 84 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~--~~G~~FvaC~eC~--------------------FpvCRpCYe-ye----rk--eg~q~CPq 84 (1049)
..-.+|.-|=.++---. +-.-+|.-|..|| ||.|..|.. |+ || ----+||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 34468999988874222 2256899999998 999999975 33 33 12258999
Q ss_pred Ccccccc
Q 045222 85 CKTRFRR 91 (1049)
Q Consensus 85 Ckt~Ykr 91 (1049)
|+=++.-
T Consensus 189 CGP~l~l 195 (761)
T 3vth_A 189 CGPSLSF 195 (761)
T ss_dssp TSCCEEE
T ss_pred cCCeeEE
Confidence 9988754
No 81
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=56.21 E-value=11 Score=35.22 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=37.1
Q ss_pred CCcccCCcCCCCcCC----------CCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 35 GGQKCHICGDDVGLP----------VDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~----------~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
....|.||-+++... ..+++--+.--.|+-.-++.|.. +--..+..||-|+.+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~-~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHH-HHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHH-HHHHcCCcCcCCCCcce
Confidence 456899999887643 11011122223689999999985 54455799999999964
No 82
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=55.40 E-value=6.9 Score=41.71 Aligned_cols=49 Identities=18% Similarity=0.529 Sum_probs=38.6
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHH-HhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYE-RREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeye-rkeg~q~CPqCkt~Ykr 91 (1049)
-..|.||-+-|... +.|..|+-..=+.|+.-- +..++..||.|++....
T Consensus 180 i~~C~iC~~iv~~g-------~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQG-------QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSC-------EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCC-------cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 45899999998754 569889999999999643 44456799999998753
No 83
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=55.25 E-value=8.1 Score=33.37 Aligned_cols=30 Identities=20% Similarity=0.476 Sum_probs=24.3
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCcc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPI 66 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~Fpv 66 (1049)
.-.-+|.-||.++.+... .-+-|.+|++.|
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~---~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK---EVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS---SCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCC---CceECCCCCcEE
Confidence 345699999999998865 458999999876
No 84
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=53.67 E-value=4.3 Score=39.69 Aligned_cols=45 Identities=22% Similarity=0.544 Sum_probs=35.5
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRF 89 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Y 89 (1049)
-.|.||.+-+- + + |.. .|+=-.|+.|..--.+.+...||.|+++.
T Consensus 32 ~~C~IC~~~~~---~---p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLR---R---P-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCS---S---E-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhc---C---c-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 48999998752 2 4 334 79999999999876777778999999875
No 85
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=53.51 E-value=4.7 Score=33.88 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=32.1
Q ss_pred CcccCCcCCCCcCCCCCCCcee--ccCCCCCc-cchhhHHHHHhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFV--ACNECAFP-ICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~Fv--aC~eC~Fp-vCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
...|.||-|.--- . .++ +| |-- .|..|..-- ++.+..||-|+.+.+.
T Consensus 7 ~~~C~IC~~~~~~--~---~~~~~pC---gH~~~C~~C~~~~-~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRD--G---NIIHGRT---GHLVTCFHCARRL-KKAGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSC--E---EEEETTE---EEEEECHHHHHHH-HHTTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCC--e---EEEecCC---CCHhHHHHHHHHH-HHhCCcCCCcCchhhc
Confidence 4589999986311 1 344 55 554 799999744 4445899999998753
No 86
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.27 E-value=30 Score=27.48 Aligned_cols=43 Identities=26% Similarity=0.685 Sum_probs=30.2
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHh--hcCCCCCCC
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERR--EGNQVCPQC 85 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerk--eg~q~CPqC 85 (1049)
....|.||-+...-. ... .|+--.|+.|..--.+ .++..||.|
T Consensus 14 ~~~~C~IC~~~~~~p-----~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP-----VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC-----CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc-----EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345899999886321 122 5788889999974443 367899988
No 87
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=46.36 E-value=8.4 Score=45.73 Aligned_cols=36 Identities=19% Similarity=0.461 Sum_probs=30.0
Q ss_pred cCCcccCCcCCCC-cCCCCCCCceeccCCCCCccchhhHHH
Q 045222 34 LGGQKCHICGDDV-GLPVDGGDPFVACNECAFPICRTCYEY 73 (1049)
Q Consensus 34 ~~~~~CqiCgd~v-g~~~~~G~~FvaC~eC~FpvCRpCYey 73 (1049)
.....|..|++-+ |+.-. | ..|..|+|.||+-|.+.
T Consensus 527 ~~~t~C~~C~~~l~gl~~q-g---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQ-G---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCC-E---EEETTTCCEECSGGGGG
T ss_pred CCCcccccccccccccccC-C---cCCCCCCCccchhhhhc
Confidence 4457999999997 77655 4 78999999999999963
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=46.17 E-value=8.4 Score=33.49 Aligned_cols=53 Identities=23% Similarity=0.538 Sum_probs=35.7
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHH---HhhcCCCCCCCccccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYE---RREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeye---rkeg~q~CPqCkt~Ykr~ 92 (1049)
+...|.+|+.. .+ |+..+.|..|.--.=-.|.... ..++.-.||.|...-++.
T Consensus 17 ~~~~C~~C~~~----~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKP----DD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBC----CS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCC----CC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 44589999876 35 7789999988544334555332 224678999998876543
No 89
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=44.86 E-value=8.3 Score=36.21 Aligned_cols=49 Identities=22% Similarity=0.709 Sum_probs=36.5
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~ 92 (1049)
+.|.+|+-.+-.-.+ -++| .=-.|-.|+..-.+++.+.||.|+.+..|.
T Consensus 2 hfC~~C~~Pi~iygR----mIPC---kHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGR----MIPC---KHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp CBCTTTCSBCSEEEE----EETT---CCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred eecCccCCCeEEEee----eccc---cccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 367777777644433 3444 446799999877789999999999999876
No 90
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=43.84 E-value=13 Score=41.81 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=28.9
Q ss_pred cCCcccCCcCCCC-cCCCCCCCceeccCCCCCccchhhHH
Q 045222 34 LGGQKCHICGDDV-GLPVDGGDPFVACNECAFPICRTCYE 72 (1049)
Q Consensus 34 ~~~~~CqiCgd~v-g~~~~~G~~FvaC~eC~FpvCRpCYe 72 (1049)
.....|..|+.-+ |+... -..|..|++.||+.|..
T Consensus 355 ~~~t~C~~C~~~~~g~~~q----g~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQ----GYRCYRCRAPAHKECLG 390 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSC----EEEETTTCCEECGGGGG
T ss_pred CCCCCCccccchhceeCCC----CCCCCCCcCccchhhhh
Confidence 4567999999997 66554 36799999999999995
No 91
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=42.11 E-value=6.6 Score=48.59 Aligned_cols=58 Identities=33% Similarity=0.756 Sum_probs=40.8
Q ss_pred cCCcccCCcCCCCcCCC--CCCCceeccCCCC--------------------CccchhhHH-HH----Hh--hcCCCCCC
Q 045222 34 LGGQKCHICGDDVGLPV--DGGDPFVACNECA--------------------FPICRTCYE-YE----RR--EGNQVCPQ 84 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~--~~G~~FvaC~eC~--------------------FpvCRpCYe-ye----rk--eg~q~CPq 84 (1049)
..-.+|.-|=.++--.. +-+=+|+-|..|| ||.|..|-. |+ || ----+||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 45568999988863222 1156899999994 999999974 44 33 11249999
Q ss_pred Ccccccc
Q 045222 85 CKTRFRR 91 (1049)
Q Consensus 85 Ckt~Ykr 91 (1049)
|+=++.-
T Consensus 184 CGP~l~l 190 (772)
T 4g9i_A 184 CGPSYRL 190 (772)
T ss_dssp TSCCEEE
T ss_pred CCceEEE
Confidence 9988753
No 92
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.53 E-value=15 Score=32.80 Aligned_cols=49 Identities=20% Similarity=0.596 Sum_probs=34.1
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHH----HhhcC---CCCCC--Ccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYE----RREGN---QVCPQ--CKTRF 89 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeye----rkeg~---q~CPq--Ckt~Y 89 (1049)
...|.||-|++.. ..++.-..|+=--|+.|..-- .++|. -.||+ |+..+
T Consensus 5 ~~~C~IC~~~~~~-----~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 5 SSGCKLCLGEYPV-----EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp BCCCSSSCCCCBG-----GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcCCcccCccccc-----ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 3489999998532 234544468999999997533 23664 48999 99874
No 93
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=40.55 E-value=11 Score=39.04 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=20.6
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHH
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYE 72 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYe 72 (1049)
....+|++||+.|.-. +=++|++|++
T Consensus 161 ~~~~~C~~CGE~~~~~-------------g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ-------------DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG-------------GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC-------------CCcCCccccC
Confidence 4667999999987643 5589999984
No 94
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.26 E-value=22 Score=32.00 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=32.0
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhc-----CCCCCC--Cccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREG-----NQVCPQ--CKTR 88 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg-----~q~CPq--Ckt~ 88 (1049)
-+|.||.+-. .| +.+.- .||.-.||.|-+--.+++ ...||. |+..
T Consensus 8 ~~CPI~~~~~---~d---PV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 8 FTCPITKEEM---KK---PVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CBCTTTCSBC---SS---EEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred eECcCcCchh---cC---CEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4899999653 12 55542 599999999986544432 468999 8876
No 95
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=38.31 E-value=9.2 Score=46.52 Aligned_cols=55 Identities=33% Similarity=0.852 Sum_probs=39.9
Q ss_pred CCcccCCcCCCCcCCC--CCCCceeccCCC--------------------CCccchhhHH-HH----Hhh--cCCCCCCC
Q 045222 35 GGQKCHICGDDVGLPV--DGGDPFVACNEC--------------------AFPICRTCYE-YE----RRE--GNQVCPQC 85 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~--~~G~~FvaC~eC--------------------~FpvCRpCYe-ye----rke--g~q~CPqC 85 (1049)
.-.+|.-|=.++--.. +-+=+|.-|..| .||.|..|.. |+ ||= ---+||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 4458999998873222 225589999999 4999999974 54 441 22599999
Q ss_pred cccc
Q 045222 86 KTRF 89 (1049)
Q Consensus 86 kt~Y 89 (1049)
+=++
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 9887
No 96
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=37.14 E-value=13 Score=32.75 Aligned_cols=26 Identities=23% Similarity=0.609 Sum_probs=17.0
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFP 65 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~Fp 65 (1049)
-+|.-||-++.+... .-+.|.+||..
T Consensus 29 Y~C~~CG~~~e~~~~---d~irCp~CG~R 54 (70)
T 1twf_L 29 YICAECSSKLSLSRT---DAVRCKDCGHR 54 (70)
T ss_dssp EECSSSCCEECCCTT---STTCCSSSCCC
T ss_pred EECCCCCCcceeCCC---CCccCCCCCce
Confidence 478888888776633 22467777763
No 97
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.68 E-value=28 Score=29.80 Aligned_cols=43 Identities=33% Similarity=0.672 Sum_probs=30.3
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCc-cchhhHHHHHhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFP-ICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~Fp-vCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
...|.||-|.. ..- ++++ |+-- .|+.|.+ ....||-|+++...
T Consensus 25 ~~~C~IC~~~~--~~~---~~~p---CgH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN--IAI---VFVP---CGHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC--CCB---CCSS---SCCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCC--CCE---EEec---CCCHHHHHHHhh-----CCCCCccCCceecC
Confidence 34899998873 111 3444 5666 8999984 23889999998864
No 98
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=36.43 E-value=14 Score=31.79 Aligned_cols=42 Identities=33% Similarity=0.675 Sum_probs=30.1
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCc-cchhhHHHHHhhcCCCCCCCcccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFP-ICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~Fp-vCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
..|.||-|.. ..- ++.+ |+=- .|+.|..- . ..||-|++++..
T Consensus 25 ~~C~iC~~~~--~~~---~~~p---CgH~~~C~~C~~~-~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRN--IAI---VFVP---CGHLVTCKQCAEA-V----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSB--CCE---EEET---TCCBCCCHHHHTT-C----SBCTTTCCBCSE
T ss_pred CCCCCCCCCC--CCE---EEcC---CCChhHHHHhhhc-C----ccCCCcCcCccC
Confidence 4899999873 111 3554 5777 89999751 1 899999998864
No 99
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=34.98 E-value=12 Score=41.93 Aligned_cols=43 Identities=23% Similarity=0.687 Sum_probs=31.0
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCCCCc-cchhhHHHHHhhcCCCCCCCcccccc
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNECAFP-ICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC~Fp-vCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
...|.||-|..- .- ++++ ||-- .|+.|..- -..||-|+++..+
T Consensus 295 ~~~C~IC~~~~~--~~---v~lp---CgH~~fC~~C~~~-----~~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV--SV---VFIP---CGHLVVCQECAPS-----LRKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC--CE---EEET---TCCEEECTTTGGG-----CSBCTTTCCBCCE
T ss_pred CCCCCccCCcCC--ce---EEcC---CCChhHhHHHHhc-----CCcCCCCCCCccC
Confidence 358999998741 11 3454 5777 89999851 1789999999864
No 100
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=34.68 E-value=12 Score=32.71 Aligned_cols=56 Identities=21% Similarity=0.532 Sum_probs=41.0
Q ss_pred ccCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHH-HhhcCCCCCCCccc
Q 045222 30 PLQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYE-RREGNQVCPQCKTR 88 (1049)
Q Consensus 30 ~~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeye-rkeg~q~CPqCkt~ 88 (1049)
+....+...|.||++.- ..+ ++..+.|..|.-.+=..||.-. .-+|.=.||.|...
T Consensus 10 ~~~~~~~~~C~vC~~~~--s~~-~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDGE--SQN-SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCCCSSCSCSSSCCCC--CCS-SSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCCCCCCCCCCC--CCC-CCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34455677999999752 223 4578999999888888898643 44788899999753
No 101
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=34.37 E-value=14 Score=33.61 Aligned_cols=55 Identities=22% Similarity=0.536 Sum_probs=40.0
Q ss_pred CccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHH-HhhcCCCCCCCcccc
Q 045222 32 QQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYE-RREGNQVCPQCKTRF 89 (1049)
Q Consensus 32 ~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeye-rkeg~q~CPqCkt~Y 89 (1049)
...+...|.||++.= ..+ ++..+-|..|.-..=..||.-. .-+|.=.||.|...-
T Consensus 21 ~~~~~~~C~vC~~~~--s~~-~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 21 LIDEDAVCSICMDGE--SQN-SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCCSSCCSSS--SCS-EEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred cCCCCCcCCcCCCCC--CCC-CCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 345667999999752 123 4579999999877778888633 457889999997643
No 102
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=34.06 E-value=3.5 Score=36.04 Aligned_cols=45 Identities=16% Similarity=0.405 Sum_probs=30.8
Q ss_pred eeccCCCCCccchhhHHHHHhhcCCCCCCCccccccccCCcccCCCCccc
Q 045222 56 FVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRLKGSARVEGDEEED 105 (1049)
Q Consensus 56 FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kgsprv~gd~~~~ 105 (1049)
..+|..|.=| .+|++.+|.-.||.|+..|--..|-|..--||...
T Consensus 8 iL~CP~ck~~-----L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear~ 52 (68)
T 2hf1_A 8 ILVCPLCKGP-----LVFDKSKDELICKGDRLAFPIKDGIPMMLESEARE 52 (68)
T ss_dssp ECBCTTTCCB-----CEEETTTTEEEETTTTEEEEEETTEECCCGGGCEE
T ss_pred heECCCCCCc-----CeEeCCCCEEEcCCCCcEecCCCCeeeeChhhccC
Confidence 4566444333 23444567789999999999999999877665443
No 103
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=33.70 E-value=33 Score=30.71 Aligned_cols=24 Identities=21% Similarity=0.603 Sum_probs=17.1
Q ss_pred CCccchhhHHHHHhhcCCCCCCCcccc
Q 045222 63 AFPICRTCYEYERREGNQVCPQCKTRF 89 (1049)
Q Consensus 63 ~FpvCRpCYeyerkeg~q~CPqCkt~Y 89 (1049)
+-+.|++||+ ++- ...|.+|+++-
T Consensus 53 g~~yC~~cy~--~~~-~~~C~~C~~~I 76 (101)
T 2cup_A 53 NKILCNKCTT--RED-SPKCKGCFKAI 76 (101)
T ss_dssp TEEECHHHHT--TCC-CCBCSSSCCBC
T ss_pred CEEEChhHhh--hhc-CCccccCCCcc
Confidence 3467999994 333 37899998865
No 104
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.67 E-value=25 Score=38.22 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=36.0
Q ss_pred cCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhh-cCCCCCC--Cccccc
Q 045222 34 LGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERRE-GNQVCPQ--CKTRFR 90 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerke-g~q~CPq--Ckt~Yk 90 (1049)
...-+|.||++-.- + +.+ ...||---||.|.+--.++ |...||. |+.++.
T Consensus 179 ~~el~CPIcl~~f~---D---PVt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYE---A---PLI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCS---S---EEE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCccc---C---Cee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34458999998761 2 332 3469999999999754444 4568999 999875
No 105
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=32.81 E-value=3.4 Score=36.30 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=30.2
Q ss_pred eeccCCCCCccchhhHHHHHhhcCCCCCCCccccccccCCcccCCCCcc
Q 045222 56 FVACNECAFPICRTCYEYERREGNQVCPQCKTRFRRLKGSARVEGDEEE 104 (1049)
Q Consensus 56 FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kgsprv~gd~~~ 104 (1049)
..+|..|.=| .+|++.+|.-.|+.|+..|--..|-|..--||..
T Consensus 8 iL~CP~ck~~-----L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (70)
T 2js4_A 8 ILVCPVCKGR-----LEFQRAQAELVCNADRLAFPVRDGVPIMLEAEAR 51 (70)
T ss_dssp CCBCTTTCCB-----EEEETTTTEEEETTTTEEEEEETTEECCCGGGSE
T ss_pred heECCCCCCc-----CEEeCCCCEEEcCCCCceecCCCCeeeeChhhcc
Confidence 4566444333 3344556778999999999999999987666533
No 106
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=32.78 E-value=11 Score=31.22 Aligned_cols=31 Identities=26% Similarity=0.740 Sum_probs=25.4
Q ss_pred CcccCCcCCCCcCCCCCCCceeccCCC-CCccchhhHHH
Q 045222 36 GQKCHICGDDVGLPVDGGDPFVACNEC-AFPICRTCYEY 73 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~~~~G~~FvaC~eC-~FpvCRpCYey 73 (1049)
+..|-.|+.+|| .-.-|.+| .|-+|..||.-
T Consensus 6 ~~~Cd~C~~~ig-------~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVE-------TRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEES-------SEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCc-------ceEEcCCCCCchhHHHHHhC
Confidence 458999999864 24779999 89999999974
No 107
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.18 E-value=32 Score=32.23 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=17.5
Q ss_pred CccchhhHHHHHhhcC-CCCCCCccccc
Q 045222 64 FPICRTCYEYERREGN-QVCPQCKTRFR 90 (1049)
Q Consensus 64 FpvCRpCYeyerkeg~-q~CPqCkt~Yk 90 (1049)
-|.|+.||. ++-+. ..|-.|+.+-.
T Consensus 55 ~~yC~~cy~--~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 55 MILCRNDYI--RLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp EEECHHHHH--HHHCCCCSSSCSSCCSC
T ss_pred eeecHHHHH--HHcCCCCccccCCCCcC
Confidence 356999994 34443 38999998764
No 108
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=30.31 E-value=15 Score=31.35 Aligned_cols=58 Identities=22% Similarity=0.566 Sum_probs=38.3
Q ss_pred cCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHH--H-HHhhcCCCCCCCccccccccCCcc
Q 045222 31 LQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYE--Y-ERREGNQVCPQCKTRFRRLKGSAR 97 (1049)
Q Consensus 31 ~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYe--y-erkeg~q~CPqCkt~Ykr~kgspr 97 (1049)
+...+...|.+|++. | ..+.|..|.-..=..|+. . +.-+|.=.||.|...- ..++.+|
T Consensus 3 ~~~~~~~~C~vC~~~-------g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~-~~~~~~~ 63 (66)
T 1xwh_A 3 MAQKNEDECAVCRDG-------G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT-VQEVQPR 63 (66)
T ss_dssp CCCSCCCSBSSSSCC-------S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC-CCCCCCC
T ss_pred cCCCCCCCCccCCCC-------C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc-cccCccc
Confidence 345567799999973 3 368899997665566775 1 2346888999997542 2334444
No 109
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=30.11 E-value=44 Score=28.06 Aligned_cols=7 Identities=29% Similarity=0.453 Sum_probs=4.6
Q ss_pred ccCCcCC
Q 045222 38 KCHICGD 44 (1049)
Q Consensus 38 ~CqiCgd 44 (1049)
.|..||.
T Consensus 13 ~Cp~C~~ 19 (58)
T 1dl6_A 13 TCPNHPD 19 (58)
T ss_dssp SBTTBSS
T ss_pred cCcCCCC
Confidence 5777765
No 110
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=30.08 E-value=13 Score=35.58 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=0.8
Q ss_pred CCcccCCcCCCCcCCC----------CCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 35 GGQKCHICGDDVGLPV----------DGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~----------~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
....|.||-+++.... ++++.-+.-..|+-.-|+.|-. +--..+..||-|+.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~-~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHH-HHHHcCCcCCCCCCeee
Confidence 3468999999975421 1123333334688888999985 43344789999999875
No 111
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.57 E-value=13 Score=35.10 Aligned_cols=27 Identities=26% Similarity=0.751 Sum_probs=18.9
Q ss_pred eccCCCCCccchhhHHHHHhhcCCCCCCCcccc
Q 045222 57 VACNECAFPICRTCYEYERREGNQVCPQCKTRF 89 (1049)
Q Consensus 57 vaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Y 89 (1049)
.-|.+|||-. + ++......||.||..-
T Consensus 68 ~~C~~CG~~F---~---~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVF---K---AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBC---C---CCSSCCSSCSSSCCCC
T ss_pred cChhhCcCee---c---ccCCCCCCCcCCCCCc
Confidence 4599999886 1 2344558999998653
No 112
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=28.89 E-value=42 Score=31.38 Aligned_cols=53 Identities=17% Similarity=0.408 Sum_probs=38.9
Q ss_pred CcccCCcCCCCcCC--CCCCCceeccCCCCCccchhhHHH------HHhhcCCCCCCCcccc
Q 045222 36 GQKCHICGDDVGLP--VDGGDPFVACNECAFPICRTCYEY------ERREGNQVCPQCKTRF 89 (1049)
Q Consensus 36 ~~~CqiCgd~vg~~--~~~G~~FvaC~eC~FpvCRpCYey------erkeg~q~CPqCkt~Y 89 (1049)
..+|.+|..+=..+ .+ ++.++.|..|+-..=..|..+ ..++++=.||.||+=.
T Consensus 5 ~~~C~~C~~~~~~~~~g~-~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~ 65 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKK-PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCS 65 (112)
T ss_dssp CSSBTTTCCCTTCCTTSC-CCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBT
T ss_pred CccccccCCchhhCcCCC-chhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccc
Confidence 35899997653333 34 678999999988777788753 3568889999998533
No 113
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=28.81 E-value=58 Score=34.05 Aligned_cols=79 Identities=13% Similarity=0.089 Sum_probs=44.6
Q ss_pred CCCCCEEEEecCC---CCCChHHHHHHHHHhhcCCCCCceeEEEecCccccCCCCccccchhhhhhHhhhccccccCCCc
Q 045222 514 LTNSPYLLNLDCD---HYINNSKALREAMCFMMDPLLGKRVCYVQFPRRFDGINQDDRFANRKTVFFDINMKGLDGIQGP 590 (1049)
Q Consensus 514 ~tng~~Il~lDaD---~~~~~p~~Lr~~m~ff~Dp~~g~~v~~VQ~PQ~F~nid~~D~yan~~~vFfdi~~~glDg~qgp 590 (1049)
..++++++.+||| .- -+|+.+.+.+.. |++|..=--|..=.+ . ++.-.. .|-.+..+ + ..
T Consensus 51 ~~~~dhllfIDAD~~~I~-FdPe~V~rLl~~------g~DVV~GsYp~K~~~--~---~s~~a~-~y~~~i~~--~--~V 113 (203)
T 2c0n_A 51 MKDYDTLAFLDEDVVPIE-IDFQKVEAKFNE------GYDVVCGYYYLKTLR--G---YSVYRK-DWEKEIFD--G--EV 113 (203)
T ss_dssp CTTCCEEEEECTTEEEEE-CCHHHHHHHHHH------TCSEEEEECBCTTSS--S---BSEESS-SBCSSCCC--E--EC
T ss_pred cCCCCEEEEEeCCCCccc-cCHHHHHHHHhC------CCCEEEEEeeccCCC--c---cchHHH-HHHHhccC--c--ee
Confidence 5788999999999 77 478888888732 223433222222111 0 111001 11111111 1 45
Q ss_pred ccccccc-hhhhhhhcCCCC
Q 045222 591 INVGTGC-VFRRQAFYGYDA 609 (1049)
Q Consensus 591 ~yvGTgc-vfRR~ALyg~~p 609 (1049)
.++|||+ ++||++|-.+..
T Consensus 114 ~d~~tGF~lIkR~V~e~L~~ 133 (203)
T 2c0n_A 114 NGCGLGFTFIKREFLEKIKR 133 (203)
T ss_dssp SEECSSEEEEEHHHHTTSCS
T ss_pred eeccccEEEEhHHHHHHHhh
Confidence 6899999 679999976643
No 114
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.56 E-value=1.1e+02 Score=26.98 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=14.1
Q ss_pred CccCccCCcccCCcCCCCcC
Q 045222 29 RPLQQLGGQKCHICGDDVGL 48 (1049)
Q Consensus 29 ~~~~~~~~~~CqiCgd~vg~ 48 (1049)
++.+......|..|+..|.-
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~ 27 (91)
T 2d8y_A 8 MKFQAPARETCVECQKTVYP 27 (91)
T ss_dssp SCSCSSSSCBCTTTCCBCCT
T ss_pred CccCCCCCCcCccCCCccCC
Confidence 44445567789999988753
No 115
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=28.14 E-value=50 Score=29.88 Aligned_cols=57 Identities=16% Similarity=0.407 Sum_probs=39.3
Q ss_pred ccCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHh-----hcCCCCCCCccccc
Q 045222 30 PLQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERR-----EGNQVCPQCKTRFR 90 (1049)
Q Consensus 30 ~~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerk-----eg~q~CPqCkt~Yk 90 (1049)
-+.......|.+|+...++... ---|..||.-+|..|-.+... .-..+|-.|-....
T Consensus 14 W~~d~~~~~C~~C~~~F~~~~R----rhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 14 WVPDSEAPNCMNCQVKFTFTKR----RHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSC----CEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CcccccCCcCcCCCCcccchhh----CccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 3555667799999999877654 366999999999999865321 12355655555443
No 116
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.99 E-value=39 Score=34.03 Aligned_cols=25 Identities=32% Similarity=0.689 Sum_probs=17.6
Q ss_pred CccchhhHHHHHhhcCC-CCCCCccccc
Q 045222 64 FPICRTCYEYERREGNQ-VCPQCKTRFR 90 (1049)
Q Consensus 64 FpvCRpCYeyerkeg~q-~CPqCkt~Yk 90 (1049)
-|.|+.||. ++-+.+ .|..|+++-.
T Consensus 55 ~~yC~~cy~--~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 55 MILCRNDYI--RLFGNSGACSACGQSIP 80 (188)
T ss_dssp EEECHHHHH--HHHSCCEECTTTCCEEC
T ss_pred ccccccccc--cccccCCccccCCCccc
Confidence 356999994 344444 7999998763
No 117
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=27.16 E-value=3.4 Score=29.85 Aligned_cols=23 Identities=39% Similarity=0.717 Sum_probs=14.9
Q ss_pred CCccchhhHHHHHhhcCCCCCCCcc
Q 045222 63 AFPICRTCYEYERREGNQVCPQCKT 87 (1049)
Q Consensus 63 ~FpvCRpCYeyerkeg~q~CPqCkt 87 (1049)
.||+||+|+.=-++ .++...|+|
T Consensus 3 ~~~iC~~CC~cc~~--~~CG~cC~~ 25 (26)
T 1m4f_A 3 HFPICIFCCGCCHR--SKCGMCCKT 25 (26)
T ss_dssp SSCCCEEEECSSSS--SSEEEECCC
T ss_pred cCCccceecccCCC--CCcCCeeCC
Confidence 59999999943333 455555654
No 118
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.05 E-value=33 Score=32.18 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=29.1
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCcccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRF 89 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Y 89 (1049)
-.|..|+..++. . |..|..= =+-|.|+.||. ++......|..|+++-
T Consensus 30 F~C~~C~~~L~~--~-~~~~~~~--~g~~yC~~~y~-~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 30 LSCDLCGCRLGE--V-GRRLYYK--LGRKLCRRDYL-RLFGQDGLCASCDKRI 76 (131)
T ss_dssp CBCTTTCCBCSS--T-TCCEEEE--TTEEECHHHHH-HHHCCCEECTTTCCEE
T ss_pred cccCcCCCcccc--C-CCeEEEE--CCEEeecCchh-hhCCCccChhhcCCcc
Confidence 378888877642 1 2234332 24678999995 3322234899999876
No 119
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=26.83 E-value=48 Score=30.91 Aligned_cols=43 Identities=26% Similarity=0.727 Sum_probs=26.6
Q ss_pred ccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccccc
Q 045222 38 KCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTRFR 90 (1049)
Q Consensus 38 ~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Yk 90 (1049)
.|..|+..+. |+.|+. .=+-|.|+.||. ++-+ ..|..|+++-.
T Consensus 32 ~C~~C~~~L~-----~~~f~~--~~g~~yC~~cy~--~~~~-~~C~~C~~~I~ 74 (126)
T 2xqn_T 32 CCFDCDSILA-----GEIYVM--VNDKPVCKPCYV--KNHA-VVCQGCHNAID 74 (126)
T ss_dssp BCTTTCCBCT-----TSEEEE--ETTEEEEHHHHH--HHSC-CBCTTTCSBCC
T ss_pred CcCCCCCCCC-----cCEEEe--ECCEEechHHhC--cCcC-ccCcccCCcCC
Confidence 5666666542 222332 125688999995 3333 78999999763
No 120
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.25 E-value=6.7 Score=34.24 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=25.0
Q ss_pred HhhcCCCCCCCccccccccCCcccCCCCcccc
Q 045222 75 RREGNQVCPQCKTRFRRLKGSARVEGDEEEDD 106 (1049)
Q Consensus 75 rkeg~q~CPqCkt~Ykr~kgsprv~gd~~~~~ 106 (1049)
+.+|.-.||.|+..|--..|-|..--||...-
T Consensus 22 ~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear~~ 53 (68)
T 2jr6_A 22 QDKQELWSRQAKLAYPIKDGIPYMLENEARPL 53 (68)
T ss_dssp TTTTEEEETTTTEEEEEETTEECCCTTTCEEC
T ss_pred CCCCEEEcCCCCcEecCCCCeeeeChhhccCc
Confidence 34566789999999999999998877754433
No 121
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=26.18 E-value=28 Score=35.71 Aligned_cols=54 Identities=20% Similarity=0.462 Sum_probs=34.9
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhH---H--HHHh-----hcCCCCCCCcccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCY---E--YERR-----EGNQVCPQCKTRF 89 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCY---e--yerk-----eg~q~CPqCkt~Y 89 (1049)
+|+.|.||+..-.-++. +...+.|..|.-=+=..|- + +|.- ...=.||.|...-
T Consensus 1 ~G~~CpiC~k~Y~~~~~-~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDY-ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCBCTTTCCBCTTCCT-TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCcCCCCcCccCCccc-CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 47899999876444433 4469999999765544443 2 2222 1357999998754
No 122
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.03 E-value=10 Score=35.94 Aligned_cols=31 Identities=16% Similarity=0.550 Sum_probs=20.3
Q ss_pred ceeccCCCCCccchhhHHHHHhhcCC-CCCCCccccccc
Q 045222 55 PFVACNECAFPICRTCYEYERREGNQ-VCPQCKTRFRRL 92 (1049)
Q Consensus 55 ~FvaC~eC~FpvCRpCYeyerkeg~q-~CPqCkt~Ykr~ 92 (1049)
...-|.+|++. ++..+-.. .||.|+.+-.+.
T Consensus 72 ~~~~C~~CG~~-------~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 72 VELECKDCSHV-------FKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp CEEECSSSSCE-------ECSCCSTTCCCSSSSSCCCEE
T ss_pred ceEEcCCCCCE-------EeCCCCCCCcCccccCCCcEE
Confidence 45668777754 23344456 899999986654
No 123
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.27 E-value=21 Score=29.91 Aligned_cols=54 Identities=17% Similarity=0.524 Sum_probs=33.8
Q ss_pred CCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHHHHh----hcCCCCCCCccccccc
Q 045222 35 GGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEYERR----EGNQVCPQCKTRFRRL 92 (1049)
Q Consensus 35 ~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYeyerk----eg~q~CPqCkt~Ykr~ 92 (1049)
.+..|++|+..- .+ ++..|+|..|.-=.=-.|...... .+.-.||.|..+..|.
T Consensus 5 e~~~C~~C~~~~---~~-~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~~ 62 (64)
T 1we9_A 5 SSGQCGACGESY---AA-DEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPS 62 (64)
T ss_dssp SCCCCSSSCCCC---CS-SSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCSS
T ss_pred CCCCCCCCCCcc---CC-CCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCCC
Confidence 355899998753 23 567999998843333344433222 2568899998765543
No 124
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=24.94 E-value=43 Score=29.27 Aligned_cols=42 Identities=26% Similarity=0.752 Sum_probs=29.6
Q ss_pred cccCCcCCCCcCCCCCCCceeccCCCCCc-cchhhHHHHHhhcCCCCCCCcccccc
Q 045222 37 QKCHICGDDVGLPVDGGDPFVACNECAFP-ICRTCYEYERREGNQVCPQCKTRFRR 91 (1049)
Q Consensus 37 ~~CqiCgd~vg~~~~~G~~FvaC~eC~Fp-vCRpCYeyerkeg~q~CPqCkt~Ykr 91 (1049)
..|.||-|..- .- +|++| |-- .|+.|.. .-+.||-|+++...
T Consensus 19 ~~C~IC~~~~~--~~---v~~pC---gH~~~C~~C~~-----~~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEI--NS---TFCPC---GHTVCCESCAA-----QLQSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBC--CE---EEETT---CBCCBCHHHHT-----TCSBCTTTCCBCCE
T ss_pred CEeEEeCcccC--cE---EEECC---CCHHHHHHHHH-----hcCcCCCCCchhhC
Confidence 48999988631 11 46665 544 7999985 22599999998864
No 125
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=24.85 E-value=9.8 Score=37.33 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=10.0
Q ss_pred CCCCCCCcccccc
Q 045222 79 NQVCPQCKTRFRR 91 (1049)
Q Consensus 79 ~q~CPqCkt~Ykr 91 (1049)
...||.|+.+--.
T Consensus 107 ~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 107 FLACPKCGSHDFE 119 (139)
T ss_dssp GCSCSSSSCCCEE
T ss_pred CCcCccccCCccE
Confidence 5789999987543
No 126
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=24.64 E-value=14 Score=44.69 Aligned_cols=45 Identities=7% Similarity=-0.149 Sum_probs=18.1
Q ss_pred ccCCcC-CCCcCC--CCCCCceeccCCCCCccchhhHHHHHhhcCCCCCCCccc
Q 045222 38 KCHICG-DDVGLP--VDGGDPFVACNECAFPICRTCYEYERREGNQVCPQCKTR 88 (1049)
Q Consensus 38 ~CqiCg-d~vg~~--~~~G~~FvaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~ 88 (1049)
.|..|| .++-.. .. |..|..| |+||-|+.-.-. +.....||+ +..
T Consensus 574 ~CP~Cg~g~l~~r~~k~-G~~f~gC--s~yp~C~f~~~~--~p~~~~Cp~-~~~ 621 (633)
T 2gai_A 574 FYLKCECGKTRSVKNDE-IAVIDDG--KIFLGRKDSESG--SPDGRSVEG-KGN 621 (633)
T ss_dssp EEEECSSSCCEECCTTS-BCEEETT--EEEC-----------------------
T ss_pred cCcccCCCcceeecccC-CCeEEeC--CCCcCCCCeecC--CccCCcCCC-CCe
Confidence 399998 565443 24 7789999 777777755422 224478998 643
No 127
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=24.55 E-value=70 Score=33.35 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=24.0
Q ss_pred CCEEEEecCCCCCChHHHHHHHHHhhcC
Q 045222 517 SPYLLNLDCDHYINNSKALREAMCFMMD 544 (1049)
Q Consensus 517 g~~Il~lDaD~~~~~p~~Lr~~m~ff~D 544 (1049)
.++|+++|||+=.-.++.+++++-.+.+
T Consensus 100 ~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 100 PEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 6899999999876789999999876654
No 128
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.25 E-value=5.3 Score=35.01 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=24.7
Q ss_pred HhhcCCCCCCCccccccccCCcccCCCCcccc
Q 045222 75 RREGNQVCPQCKTRFRRLKGSARVEGDEEEDD 106 (1049)
Q Consensus 75 rkeg~q~CPqCkt~Ykr~kgsprv~gd~~~~~ 106 (1049)
+.+|.-.|+.|+..|--..|-|..--||...-
T Consensus 22 ~~~~~LiC~~cg~~YPI~dGIPvmL~~ear~~ 53 (69)
T 2pk7_A 22 ADKTELISKGAGLAYPIRDGIPVMLESEARTL 53 (69)
T ss_dssp TTSSEEEETTTTEEEEEETTEECCCGGGCEEC
T ss_pred CCCCEEEcCCCCcEecCcCCeeeeChhhcccc
Confidence 34566789999999999999998776654433
No 129
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.12 E-value=6.7 Score=34.19 Aligned_cols=30 Identities=20% Similarity=0.090 Sum_probs=23.8
Q ss_pred HhhcCCCCCCCccccccccCCcccCCCCcc
Q 045222 75 RREGNQVCPQCKTRFRRLKGSARVEGDEEE 104 (1049)
Q Consensus 75 rkeg~q~CPqCkt~Ykr~kgsprv~gd~~~ 104 (1049)
..+|.-.|+.|+..|--..|-|..--||..
T Consensus 24 ~~~g~LvC~~c~~~YPI~dGIPvmL~~Ear 53 (67)
T 2jny_A 24 ESEQLLVNERLNLAYRIDDGIPVLLIDEAT 53 (67)
T ss_dssp TTTTEEEETTTTEEEEEETTEECCCSSCCE
T ss_pred CCCCEEEcCCCCccccCCCCEeeeChhHhc
Confidence 345667899999999999999987766533
No 130
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.11 E-value=83 Score=27.95 Aligned_cols=39 Identities=21% Similarity=0.534 Sum_probs=30.5
Q ss_pred cCccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHH
Q 045222 31 LQQLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEY 73 (1049)
Q Consensus 31 ~~~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYey 73 (1049)
+.......|.+|+..-++... ---|..||--+|..|-.+
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~R----rHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVR----RHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSC----CEECTTTCCEECTGGGCC
T ss_pred ccCCCCCCCcCcCCccccchh----cccccCCCcEEChHHhCC
Confidence 555677799999999777654 366888999999888754
No 131
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.02 E-value=49 Score=28.78 Aligned_cols=37 Identities=16% Similarity=0.556 Sum_probs=22.8
Q ss_pred CccCccCCcccCCcCCCCcCC----CCCCCce----eccCCCCCcc
Q 045222 29 RPLQQLGGQKCHICGDDVGLP----VDGGDPF----VACNECAFPI 66 (1049)
Q Consensus 29 ~~~~~~~~~~CqiCgd~vg~~----~~~G~~F----vaC~eC~Fpv 66 (1049)
+|.+......|..|+..|... +. |..+ ..|.+|.-++
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~~~v~a~-~~~wH~~CF~C~~C~~~L 52 (80)
T 2dj7_A 8 KPIKIRGPSHCAGCKEEIKHGQSLLAL-DKQWHVSCFKCQTCSVIL 52 (80)
T ss_dssp CCCCCSSCSCCTTTCCCCSSSCCEEET-TEEECTTTCBCSSSCCBC
T ss_pred CCcCCCCCCCCcCcCCeeCCCeEEEEC-CcccccccCCcCcCCCCc
Confidence 555666677999999988532 22 3222 3566775544
No 132
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=21.78 E-value=57 Score=27.36 Aligned_cols=47 Identities=23% Similarity=0.694 Sum_probs=35.2
Q ss_pred ccCCcccCCcCCCCcCCCCCCCceeccCCCCCccchhhHHH---HHhhcCCCCCCCcc
Q 045222 33 QLGGQKCHICGDDVGLPVDGGDPFVACNECAFPICRTCYEY---ERREGNQVCPQCKT 87 (1049)
Q Consensus 33 ~~~~~~CqiCgd~vg~~~~~G~~FvaC~eC~FpvCRpCYey---erkeg~q~CPqCkt 87 (1049)
..+...|.+|++. | ..+.|..|.-.-=-.|..- +.-+|.=.||.|..
T Consensus 8 ~~~~~~C~vC~~~-------g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG-------G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC-------S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC-------C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4456799999973 3 4788999977767777764 24578899999975
No 133
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=21.75 E-value=1.2e+02 Score=30.15 Aligned_cols=52 Identities=17% Similarity=0.455 Sum_probs=32.6
Q ss_pred cCCcccCCcCCCCcCC----CCCCCce----eccCCCCC------------ccchhhHHHHHhhcCCCCCCCcccc
Q 045222 34 LGGQKCHICGDDVGLP----VDGGDPF----VACNECAF------------PICRTCYEYERREGNQVCPQCKTRF 89 (1049)
Q Consensus 34 ~~~~~CqiCgd~vg~~----~~~G~~F----vaC~eC~F------------pvCRpCYeyerkeg~q~CPqCkt~Y 89 (1049)
....+|..|+..|.-. +. |..+ ..|.+|.- |.|+.||. ++-+ ..|..|+++-
T Consensus 58 ~~~~~C~~C~~~I~~~~~~~a~-~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~--~~f~-~kC~~C~~~I 129 (182)
T 2jtn_A 58 PEIPMCAGCDQHILDRFILKAL-DRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF--KRFG-TKCAACQLGI 129 (182)
T ss_dssp CSCCBCBTSSSBCCCSEEEEET-TEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHH--HTTS-CCCTTTCCCC
T ss_pred CCCCcCccCCCCccCceeEEec-CCeEccccCccCCCCCccCCCceeECCEeeecCccc--cccc-cccccCCCcc
Confidence 3356999999988532 23 3332 24667754 45888884 3333 6788888754
No 134
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.20 E-value=50 Score=28.76 Aligned_cols=62 Identities=21% Similarity=0.509 Sum_probs=31.1
Q ss_pred cCccCCcccCCcCCCCcCC----CCCCCce----eccCCCCCccchhhHHHHHhhcCCCCCCCccccccccCCc
Q 045222 31 LQQLGGQKCHICGDDVGLP----VDGGDPF----VACNECAFPICRTCYEYERREGNQVCPQCKTRFRRLKGSA 96 (1049)
Q Consensus 31 ~~~~~~~~CqiCgd~vg~~----~~~G~~F----vaC~eC~FpvCRpCYeyerkeg~q~CPqCkt~Ykr~kgsp 96 (1049)
.+......|..|+..|... +. |..+ ..|.+|.=++=.-.|-.-.++|. +=|+.-|.+...+|
T Consensus 10 ~~~~~~~~C~~C~~~I~~~e~v~a~-~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~---~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 10 QEAGAGDLCALCGEHLYVLERLCVN-GHFFHRSCFRCHTCEATLWPGGYEQHPGDGH---FYCLQHLPQTDSGP 79 (82)
T ss_dssp CCCCSSCBCSSSCCBCCTTTBCCBT-TBCCBTTTCBCSSSCCBCCTTSEECCTTTCC---CEETTTCCCCCCCC
T ss_pred cCCCCCCCCcccCCCcccceEEEEC-CCeeCCCcCEEcCCCCCcCCCceeEeCcCCE---EEChHHHHhhhcCC
Confidence 3344567999999998532 33 4433 23445544443333310013444 33455566555444
No 135
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=21.05 E-value=59 Score=25.00 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhh
Q 045222 277 IVIIRLVVLGFFFHYRV 293 (1049)
Q Consensus 277 ~iv~~lv~l~~yl~wRi 293 (1049)
++++.+++...||+||=
T Consensus 16 l~vif~~lg~tflywrg 32 (40)
T 2l9u_A 16 LVVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCceeEEEcc
Confidence 35566667778999984
No 136
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=20.84 E-value=35 Score=34.14 Aligned_cols=35 Identities=31% Similarity=0.642 Sum_probs=25.1
Q ss_pred cccCCcC-CCCcCC----CCCCC-ceeccCCCCCccchhhHH
Q 045222 37 QKCHICG-DDVGLP----VDGGD-PFVACNECAFPICRTCYE 72 (1049)
Q Consensus 37 ~~CqiCg-d~vg~~----~~~G~-~FvaC~eC~FpvCRpCYe 72 (1049)
.+|..|| .+.-.+ .+ |+ +++--+|=--|+||-||.
T Consensus 138 ~ic~~cg~~~a~~~~r~~~~-~~~~~ig~~~~Y~~~cr~~~~ 178 (184)
T 2orw_A 138 AVCHRCGEYNATLTLKVAGG-EEEIDVGGQEKYIAVCRDCYN 178 (184)
T ss_dssp BCCTTTCCSCBCEEEECSSC-SCSCCCCSTTTEEEECHHHHH
T ss_pred eecCCCCCeeceeEEEEcCC-CCEEEECCCCcEEEccHHHHh
Confidence 4899999 553322 23 44 467777888999999995
No 137
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.70 E-value=33 Score=28.19 Aligned_cols=15 Identities=40% Similarity=1.218 Sum_probs=13.2
Q ss_pred cCCCCCCCccccccc
Q 045222 78 GNQVCPQCKTRFRRL 92 (1049)
Q Consensus 78 g~q~CPqCkt~Ykr~ 92 (1049)
++..||+|+..|+..
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 678999999999865
Done!