BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045225
(353 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2XCJ1|U496C_ORYSI UPF0496 protein 3 OS=Oryza sativa subsp. indica GN=OsI_009784 PE=3
SV=2
Length = 378
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 181/379 (47%), Gaps = 50/379 (13%)
Query: 1 DEELREARK------SLNINEEYLSALRTKSFAECLSK---------AQLFVTEPSSPSC 45
D+++ E +K S + EEY SA RT+S+ + ++ A L C
Sbjct: 16 DQQVHEPKKVVAPSSSFDFREEYTSAFRTESYNDFWARVLDITLAHGAALVPRHGGGGGC 75
Query: 46 RHEK-------FCEILLEPDQDTIPSILESAVLSKV-PELKDLLLNYFDISAEASSICGQ 97
K F E LLEPDQ + + L S S++ P+++ LL Y+ +A AS +C
Sbjct: 76 AASKRLPSYRLFAEHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSH 135
Query: 98 LLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSL-IILTNPFSN--PSTNE 154
LLK+I +R YR ++ L D + VS L + L PF+ S
Sbjct: 136 LLKDIEHIRLRYRPLKHTLRKLASD---------VGVSGLADVSAALGQPFTALAASQGR 186
Query: 155 FKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALT 214
+ + +L L + RKK +I+ + + +A + +++A+ + H L
Sbjct: 187 LREVQAGSGDLLRGLDAGRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILA 246
Query: 215 ALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVA 274
A PM+ RF R+ QL+ AAKGTYILNRD +T+ RLVA
Sbjct: 247 AFAAFPMM--------SPAWLGERFFSGRAARRALVQLEAAAKGTYILNRDMETISRLVA 298
Query: 275 RLHDEVEHNKVMIQFCLDRR-------EDKFALHVMKEIKKNHVGFQKQVEELEEHVYLC 327
R+ DE EH +++ C++ R + + V++++ KN F++Q++ELEEH++LC
Sbjct: 299 RVRDEGEHMVALLRLCVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLC 358
Query: 328 LVTINRARSQVIKEMVTSS 346
+TIN+AR V+ M ++
Sbjct: 359 FMTINKARIMVMNFMAAAA 377
>sp|Q10RR9|U496C_ORYSJ UPF0496 protein 3 OS=Oryza sativa subsp. japonica GN=Os03g0148000
PE=2 SV=1
Length = 378
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 179/379 (47%), Gaps = 50/379 (13%)
Query: 1 DEELREARK------SLNINEEYLSALRTKSFAECLSK---------AQLFVTEPSSPSC 45
D+++ E +K S + EEY SA RT+S+ + ++ A L C
Sbjct: 16 DQQVHEPKKVVAPSSSFDFREEYTSAFRTESYNDFWARVLDITLAHGAALVPRHGGGGGC 75
Query: 46 RHEK-------FCEILLEPDQDTIPSILESAVLSKV-PELKDLLLNYFDISAEASSICGQ 97
K F E LLEPDQ + + L S S++ P+++ LL Y+ +A AS +C
Sbjct: 76 AASKRLPSYRLFAEHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSH 135
Query: 98 LLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSL-IILTNPFSN--PSTNE 154
LLK+I +R YR ++ L D + VS L + L PF+ S
Sbjct: 136 LLKDIEHIRLRYRPLKHTLRKLASD---------VGVSGLADVSAALGQPFTALAASQGR 186
Query: 155 FKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALT 214
+ + +L L + RKK +I+ + + +A + +++A+ + H L
Sbjct: 187 LREVQAGSGDLLRGLDAGRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILA 246
Query: 215 ALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVA 274
A PM+ RF R+ QL+ AAKGTYILNRD +T+ RLVA
Sbjct: 247 AFAAFPMM--------SPAWLGERFFSGRAARRALVQLEAAAKGTYILNRDMETISRLVA 298
Query: 275 RLHDEVEHNKVMIQFCLDRR-------EDKFALHVMKEIKKNHVGFQKQVEELEEHVYLC 327
R+ DE EH + + C++ R + + V++++ KN F++Q++ELEEH++LC
Sbjct: 299 RVRDEGEHMVALRRLCVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLC 358
Query: 328 LVTINRARSQVIKEMVTSS 346
+T N+AR V+ M ++
Sbjct: 359 FMTTNKARIMVMNFMAAAA 377
>sp|Q6DYE5|U496K_ARATH UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2
SV=2
Length = 390
Score = 151 bits (381), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 184/369 (49%), Gaps = 32/369 (8%)
Query: 5 REARKSLNINEEYLSALRTKSFAECLSKA--QLFVTEPSSPSCRHEK------------F 50
R L++NEEY A RT S+ E +KA QL +T S S F
Sbjct: 28 RSLTSKLSVNEEYKEAFRTNSYLETRTKAEDQLGITSCSKLSSSSPSPSSSSDLSFHSHF 87
Query: 51 CEILLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYR 110
+ LL+P Q+T+ ++++ + L +L++ +FD+S+EA +C LL+ + ++ +
Sbjct: 88 TDYLLDPPQETLDALMQDS------SLDNLIVTFFDLSSEACDVCETLLQCLQQIKINHN 141
Query: 111 FIQLAL-------DTADDDQTEPHDKVKLIVSNLNSLIILTNPFSN-PSTNEFKVIHDKY 162
I+ + + A + P LI L+ L NP + +F+++HD
Sbjct: 142 KIKRVMKIGKRVCNGAKTLECSPEMLCALIFQELSRFAALKNPLCRIVNEAQFRIVHDAN 201
Query: 163 SSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMI 222
S +L L SK++++ RKI+ + K G + S I I +++A H++ + P +
Sbjct: 202 SDLLTKLTSKKRRIRRKIRFFKFCKKLGGYSLVITHSAIVITLLIIALHSILGVFAAPAL 261
Query: 223 LSFPTKCF-KKKLFNFRFLRSG---FLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHD 278
L + C +KK R +S L K+ Q+D+AAKG +IL D DT+ RL RL D
Sbjct: 262 LGLCSFCLLRKKKAKGRMHKSNKDTTLEKLGTQIDIAAKGMFILINDLDTLSRLAGRLCD 321
Query: 279 EVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQV 338
E+EH K + C R+ + ++E + F Q++ELEEH+YLC TINR+R V
Sbjct: 322 EIEHRKTVAAMCAKSRKIEVLKEALREFNGHEEKFSDQLQELEEHLYLCFHTINRSRRLV 381
Query: 339 IKEMVTSSS 347
+ ++ SS
Sbjct: 382 LAQITGQSS 390
>sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070 OS=Arabidopsis thaliana GN=At3g49070 PE=2
SV=1
Length = 416
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 185/356 (51%), Gaps = 45/356 (12%)
Query: 11 LNINEEYLSALRTKSFAECLSKA-QLFVTEPSSPS----------------CRHEKFCEI 53
+++ EEY +A RT+S+ ++ QL + + S + F
Sbjct: 69 VDVREEYANAFRTESYNHFWTRVVQLSRKKSAVSSSSSSPPIESSSTSARLMSYRLFAHN 128
Query: 54 LLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQ 113
LL+PD +TI IL+ + + + + LL +YF +A A +C QLLKNI+ +R +Y ++
Sbjct: 129 LLDPDLNTITRILDVSRVGR--HTRTLLSDYFLETANAFLLCTQLLKNIHHLRSKYESLK 186
Query: 114 LALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKR 173
+E H+ + LI + +PF + S + ++I +L L+S+R
Sbjct: 187 PKF------HSENHNSLALI-DQFTEISKWFDPFIS-SGSRIQLIRSGCLYLLKRLESRR 238
Query: 174 KKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILS--FPTKCFK 231
K K+KLIN + +SG V +L V +A+HA L P +L+ F +
Sbjct: 239 DKTRAKLKLINGLTHSSG---LLVLALTTTLIVTIASHAFALFLAAPTLLASQFKPAGLR 295
Query: 232 KKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCL 291
KL K +LDVAAKGTYIL+RD DT+ RLV R++DEV H + M +F +
Sbjct: 296 NKL-----------TKTAARLDVAAKGTYILSRDLDTISRLVTRINDEVNHVRAMAEFWV 344
Query: 292 DRREDKF--ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTS 345
R + + V +E+K+ F ++++ELEEH+YLC +TINRAR+ ++KE++ S
Sbjct: 345 GRGSGRVRGSEEVARELKRCEESFSEELDELEEHIYLCFMTINRARNLLVKEILDS 400
>sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330 OS=Arabidopsis thaliana GN=At3g19330 PE=2
SV=2
Length = 382
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 179/357 (50%), Gaps = 46/357 (12%)
Query: 7 ARKSLNINEEYLSALRTKSFAECLSKAQLFV---------TEPSSPSCRHEKFCEILLEP 57
+ + N++ E A +T S+ + S+ + V +P E +L+P
Sbjct: 41 SSPTFNLSRELAHAFQTPSYHDVRSRVHVVVDLTQIHHRLIQPDI-----ELLLSQVLQP 95
Query: 58 DQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALD 117
+++ + + K L +L+ YF S +A+ +C L +N++ R+ L
Sbjct: 96 NKECVQEAIRHV---KQTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARH-----HLYTP 147
Query: 118 TADDDQTEPHDKVKLIVSNLNSLII--------LTNPFSNPSTNEFKVIHDKYSSVLHNL 169
D P D + I +L L NPFS+P + F+ +S + HNL
Sbjct: 148 LLDLFNIFPGDSLPAIDESLCDLAFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNL 207
Query: 170 KSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLI--GPMILSFPT 227
+ +K +++LI++ S +C+ A +A +AVV+A+HAL LL+ GP+ +
Sbjct: 208 DRRLRKSRSRVRLIHHATAGSSLCLVAAVVAVAASAVVIASHALPILLVVAGPLCSPYLP 267
Query: 228 KCFKKK-LFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVM 286
FK+K L N QL+ A+KGT++LN+D DT+ RLV+RLH +E++K +
Sbjct: 268 HSFKRKELTNI------------CQLNAASKGTFVLNKDLDTIDRLVSRLHTGIEYDKFL 315
Query: 287 IQFCLDRREDKFALH-VMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEM 342
I+ L+R D ++ ++K ++K+H+ Q+++LE+H+ L +N+ARS ++ E+
Sbjct: 316 IRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKDLEDHICLWFTNVNKARSLLLTEI 372
>sp|Q9LJK4|U496L_ARATH UPF0496 protein At3g19250 OS=Arabidopsis thaliana GN=At3g19250 PE=2
SV=1
Length = 360
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 177/342 (51%), Gaps = 26/342 (7%)
Query: 10 SLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHEKFCEILLEPDQDTIPSILESA 69
+ N++ E A +T S+ + +++L V +P+ + E F L P+ +++ L S
Sbjct: 33 TFNLSHELAHAFQTPSYHDI--RSRLLVIDPTQENL--ELFLSQELRPNNESVQEAL-SL 87
Query: 70 VLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTEPHDK 129
+K L +L+ YF S +A+ C L +N++ R LD + + H
Sbjct: 88 RHAKQTTLTNLVSTYFQHSEDATRFCLNLYQNVHSARCH--LYTPLLDLFNIFPRDSHSA 145
Query: 130 VKLIVSNLNSLIILT-----NPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLIN 184
+ NL + L NPF++P ++ F+ + + L ++ +K +++L++
Sbjct: 146 IDESFCNLAFDVFLKLDTFENPFASPESHSFQDTQLCFYQLADKLDTRIRKSKSRVRLLH 205
Query: 185 YVHKASGICITAVCSLIAIAAVVLAAHALTALLI--GPMILSFPTKCFKKKLFNFRFLRS 242
+ S +C+ ++A +A +A HAL +L+ GP+ + FKKK + F
Sbjct: 206 HATAGSALCLVTAVVVVAASAAFIAYHALPTILVVAGPLCTPYLPHSFKKKELSNIF--- 262
Query: 243 GFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFAL-H 301
QL+VAAKGT+ LN+D DT+ RLV+RLH V+++K++I+ L+R D + +
Sbjct: 263 --------QLNVAAKGTFALNKDLDTIDRLVSRLHTGVKNDKLLIRLGLERGRDVYTIPE 314
Query: 302 VMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343
+K+++K+HV Q+E L +H+ +N++RS ++KE++
Sbjct: 315 FVKQLRKSHVNHTHQLEVLVDHICRWFTNVNKSRSLLLKEIL 356
>sp|A2YH25|U496B_ORYSI Putative UPF0496 protein 2 OS=Oryza sativa subsp. indica
GN=OsI_023618 PE=3 SV=2
Length = 408
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Query: 232 KKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCL 291
+K+ + + R+G LD AA+G YI+ RD DT+ R+V R HDE+EH + + + +
Sbjct: 280 EKVSSRHYARAG------ATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAM 333
Query: 292 DRREDKFALH-VMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343
++ L V +E ++ + Q+ ELEEHV LCL+TINR R V EM
Sbjct: 334 RGHGERPLLQEVAREEEECEEDLRAQLAELEEHVCLCLITINRTRRLVAHEMA 386
>sp|Q5Z8N6|U496B_ORYSJ Putative UPF0496 protein 2 OS=Oryza sativa subsp. japonica
GN=Os06g0718300 PE=3 SV=1
Length = 408
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Query: 232 KKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCL 291
+K+ + + R+G LD AA+G YI+ RD DT+ R+V R HDE+EH + + + +
Sbjct: 280 EKVSSRHYARAG------ATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAM 333
Query: 292 DRREDKFALH-VMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343
++ L V +E ++ + Q+ ELEEHV LCL+TINR R V EM
Sbjct: 334 RGHGERPLLQEVAREEEECEEDLRAQLAELEEHVCLCLITINRTRRLVAHEMA 386
>sp|Q10QE9|U496A_ORYSJ UPF0496 protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0199100
PE=2 SV=1
Length = 388
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 136/309 (44%), Gaps = 19/309 (6%)
Query: 54 LLEPDQDTIPSILE-SAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFI 112
LL+ +Q+ + IL+ + K PEL DL+ +YF+ S C L K + R +
Sbjct: 84 LLDMNQEVVRVILDCKKDIWKSPELFDLVEDYFESSLHTLDFCTALDKCLKRARDSQLLL 143
Query: 113 QLALDTADDDQ-----------TEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDK 161
+AL DD++ P + + L +PF+ + F+ ++ +
Sbjct: 144 HVALQRFDDEEDNDAAAAGQEDAAPSARYARTLHELRQFKAAGDPFTEEFFSAFQAVYRQ 203
Query: 162 YSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPM 221
++L L+ ++ ++ +K++ I + S I + + I +VV AA A +
Sbjct: 204 QLTMLEKLQQRKHRLDKKVRAIKAWRRVSSIIFATTFAAVLICSVVAAAIAAPPVAAALA 263
Query: 222 ILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAK---GTYILNRDFDTMGRLVARLHD 278
+ K + L G+ +R Q +V + GT+I +D D++ L+ R+
Sbjct: 264 AAASIPVGSMGKWIDS--LLKGYQDALRGQKEVVSAMQVGTFIAIKDLDSIRVLINRVEL 321
Query: 279 EVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQV 338
E+ ++F +R E+ V +EIKK F K VE+L E C I RAR+ V
Sbjct: 322 EISSMIDCVEFA-ERDEEAVKFGV-EEIKKKLEVFMKSVEDLGEQADRCSRDIRRARTVV 379
Query: 339 IKEMVTSSS 347
++ ++ S
Sbjct: 380 LQRIIRHPS 388
>sp|A2XDK8|U496A_ORYSI UPF0496 protein 1 OS=Oryza sativa subsp. indica GN=OsI_010151 PE=2
SV=1
Length = 388
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 136/309 (44%), Gaps = 19/309 (6%)
Query: 54 LLEPDQDTIPSILE-SAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFI 112
LL+ +Q+ + IL+ + K PEL DL+ +YF+ S C L K + R +
Sbjct: 84 LLDMNQEVVRVILDCKKDIWKSPELFDLVEDYFESSLHTLDFCTALDKCLKRARDSQLLL 143
Query: 113 QLALDTADDDQ-----------TEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDK 161
+AL DD++ P + + L +PF+ + F+ ++ +
Sbjct: 144 HVALQRFDDEEDNDAAAAGQEDAAPSARYARTLHELRQFKAAGDPFTEEFFSAFQAVYRQ 203
Query: 162 YSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPM 221
++L L+ ++ ++ +K++ I + S I + + I +VV AA A +
Sbjct: 204 QLTMLEKLQQRKHRLDKKVRAIKAWRRVSSIIFATTFAAVLICSVVAAAIAAPPVAAALA 263
Query: 222 ILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAK---GTYILNRDFDTMGRLVARLHD 278
+ K + L G+ +R Q +V + GT+I +D D++ L+ R+
Sbjct: 264 AAASIPVGSMGKWIDS--LLKGYQDALRGQKEVVSAMQVGTFIAIKDLDSIRVLINRVEL 321
Query: 279 EVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQV 338
E+ ++F +R E+ V +EIKK F K VE+L E C I RAR+ V
Sbjct: 322 EISSMIDCVEFA-ERDEEAVKFGV-EEIKKKLEVFMKSVEDLGEQADRCSRDIRRARTVV 379
Query: 339 IKEMVTSSS 347
++ ++ S
Sbjct: 380 LQRIIRHPS 388
>sp|Q9SYZ7|U496A_ARATH UPF0496 protein At4g34320 OS=Arabidopsis thaliana GN=At4g34320 PE=1
SV=1
Length = 374
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 10/295 (3%)
Query: 54 LLEPDQDTIPSILE-SAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFI 112
LLE +Q+ + IL+ + K E+ +L+ +YF+ S + C L K + R + I
Sbjct: 75 LLEMNQEVVKVILDCKKDIWKNQEMFELVEDYFENSLKTLDFCAALEKGLRRARDSHLLI 134
Query: 113 QLALDTADDDQ-TEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKS 171
+AL +D+ + + K + L + +PF+ F+ ++ + +L L+
Sbjct: 135 LVALQQFEDESLVQGGNGYKKTLEELKNFKDAESPFNEDFFKMFQSVYKQQMLMLEKLQH 194
Query: 172 KRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFK 231
++ K+ +K+K I+ K S I A + + I +VV AA A + +
Sbjct: 195 RKNKLDKKLKCIHTWRKLSSIIFVATFATVLICSVVAAAMAAPPVAAALAAATAVPLGSM 254
Query: 232 KKLFNFRFLRSGFLRKVRKQLDVAAK---GTYILNRDFDTMGRLVARLHDEVEHNKVMIQ 288
K + L + ++ Q +V + GT++ +D D + L+ RL E+ +
Sbjct: 255 GKWID--SLWKNYENALKGQKEVISSMQAGTFVAVKDLDNIRVLIERLEIEITGMVKSAE 312
Query: 289 FCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343
F ++ K + +IKK F+K VEEL LC I RAR+ +++ ++
Sbjct: 313 FAVEHNAVKIGID---DIKKKLEVFKKNVEELGTQADLCSRDIRRARTVILQRII 364
>sp|Q8GW16|U496H_ARATH UPF0496 protein At5g66675 OS=Arabidopsis thaliana GN=At5g66675 PE=2
SV=1
Length = 412
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 135/306 (44%), Gaps = 20/306 (6%)
Query: 54 LLEPDQDTIPSILESAVLSKVPELKDL--LLN-YFDISAEASSICGQLLKNINDVRYEYR 110
LLE +Q+ + I+ES V + KDL L+N YFD S + C + + R
Sbjct: 94 LLEMNQEVVRFIIESK--EDVWDNKDLTCLVNAYFDSSIKTLDFCNAVDNCVKRARIGQM 151
Query: 111 FIQLAL------DTADDDQTEPH-DKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYS 163
+Q AL + + EP +K + LN +PF + ++++
Sbjct: 152 LLQFALKQFEMESSGSNKSVEPGTNKYAKTLEELNKFKASGDPFDGDFFMLLESVYEQQV 211
Query: 164 SVLHNLKSKRKKVARKIKLINYVHKASGIC-ITAVCSLIAIAAVVLAAHALTALLIGPMI 222
+L L +++K+ +K+K I Y K S + +TA S++ + V A A +
Sbjct: 212 MLLEILHKQKRKLDKKLKNIKYWKKISNVVFVTAFVSVLIFSVVAAAVAAPPVVTALAAA 271
Query: 223 LSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAK---GTYILNRDFDTMGRLVARLHDE 279
L+ P K L + V+ Q D+ G Y+ +D D + V +L E
Sbjct: 272 LAVPIGSIGKWC---NHLWKKYETAVKGQKDIVLSMRIGAYVTMKDMDNIRVHVDKLKIE 328
Query: 280 VEHNKVMIQFCLDRREDKFALHV-MKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQV 338
+E + F L +E++ A+ + M EI K F +++EE+ ++ C I AR+ V
Sbjct: 329 MESMMQKVDFALKEKEEEVAVRLSMHEISKKFDVFTERIEEVGDNATKCSKNITLARTIV 388
Query: 339 IKEMVT 344
++ +++
Sbjct: 389 LRHILS 394
>sp|Q56XQ0|U496I_ARATH UPF0496 protein At2g18630 OS=Arabidopsis thaliana GN=At2g18630 PE=2
SV=3
Length = 393
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 135/298 (45%), Gaps = 15/298 (5%)
Query: 54 LLEPDQDTIPSILESAVLSKVPELKDL--LLN-YFDISAEASSICGQLLKNINDVRYEYR 110
LL+ +QD + IL+ + +DL L+N YF+ +A+ C +L +N R
Sbjct: 86 LLDMNQDVVKVILQDK--EDIWNNQDLFSLVNLYFESTAKTMDFCSELENCLNRARRSQV 143
Query: 111 FIQLALDTADDDQTEPHD-KVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNL 169
IQ A++ +++ + + K + + L + PF+ F +++ + +L L
Sbjct: 144 IIQFAVNQFEEENEDKENRKYEKTLEELKRFKVAGEPFTKEFFALFDLVYKQQVMMLEEL 203
Query: 170 KSKRKKVARKIKLINYVHKASGIC-ITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTK 228
++K+ ++++ I + S + +TA S++ + V A A + L+ P
Sbjct: 204 HKLKRKLDKRLRNIKTWRRVSNMVFVTAFVSVLIFSVVAAAVAAPPVVAAIAGALAVPVG 263
Query: 229 CFKKKLFNFRFLRSGFLRKVRKQLDVAAK---GTYILNRDFDTMGRLVARLHDEVEHNKV 285
K L + + + VR Q ++ GTYI ++ D + LV ++ E+E
Sbjct: 264 SVGKWC---NTLWTKYEKVVRGQKEIITSIRIGTYISVKEMDNISILVRKVEVEIESLLK 320
Query: 286 MIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343
+F + E+K + EIKK F + +EEL EH + +AR+ +++ ++
Sbjct: 321 KAEFAIT--EEKEVRLAIDEIKKKLDVFTETIEELGEHAGKYCSDVTKARTVILQRII 376
>sp|Q9LVR3|U496G_ARATH UPF0496 protein At5g66670 OS=Arabidopsis thaliana GN=At5g66670 PE=2
SV=1
Length = 408
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 138/306 (45%), Gaps = 41/306 (13%)
Query: 54 LLEPDQDTIPSILESA--VLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRF 111
LLE +QDT+ I+ES VL K +LK L+ YF +++ C + K +
Sbjct: 94 LLELNQDTVRVIIESKEDVL-KNNDLKALVDVYFKSTSKTLDFCNTVEKCVKKAEISQLI 152
Query: 112 IQLAL-----DTADDDQTEPHDK--VKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSS 164
I+ A+ +T D D E K VK + +N + +PF ++K ++D+
Sbjct: 153 IRFAVKQFETETVDTDLGESKKKKYVKTL-EEMNKFKAMGDPFDGEFVTQYKSVYDEQVL 211
Query: 165 VLHNLKSKRKKVA------RKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLI 218
+L L+ + K+ + ++++ V A+ V S+ +AA ++A L+A+
Sbjct: 212 LLDELRKLKVKLGKKLRNIKTWRILSNVVFATAFVTVFVLSV--VAAAMMAPPVLSAVAS 269
Query: 219 GPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQ--------LDVAAKGTYILNRDFDTMG 270
G L+ P + ++ + + + + V++Q L V A ++N F+
Sbjct: 270 G---LTTPIEVV--GMWCNKMWKE-YEKAVKRQRGLVLTMELGVQANNVTMVNIKFE--- 320
Query: 271 RLVARLHDEVEHNKVMIQFCLDRREDKFALH-VMKEIKKNHVGFQKQVEELEEHVYLC-- 327
V L + + F +DR E++ A M+EIKK GF +++EE+ E C
Sbjct: 321 --VENLSIRISSILKTVNFAVDREENEMATRFAMQEIKKKVEGFTEKIEEVGERAANCSK 378
Query: 328 LVTINR 333
L+ + R
Sbjct: 379 LIALGR 384
>sp|Q9SYZ8|U496B_ARATH UPF0496 protein At4g34330 OS=Arabidopsis thaliana GN=At4g34330 PE=3
SV=1
Length = 354
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 126/297 (42%), Gaps = 22/297 (7%)
Query: 54 LLEPDQDTIPSILE-SAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFI 112
LL+ +Q+ IL+ + K E+ + + YF+ S + L + + V+ + FI
Sbjct: 73 LLDMNQEVAKVILDCKKDIWKNQEMFEFVEAYFETSLKTLDFFNALKRGLQGVQINHLFI 132
Query: 113 QLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSK 172
LD + K + L PF F+ ++++ +L L+ +
Sbjct: 133 ---LD---------GNGYKKTLQELKRFKDADRPFDQDFFKMFQSVYNQQKWMLDKLQRR 180
Query: 173 RKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKK 232
+ K+ +K+K I K S I A + + I +V+ A A + + P K
Sbjct: 181 QNKLDKKLKRIRTWRKLSSIIFMATFATLVICSVLAATMAAPHVAAALAAATPPVGSMGK 240
Query: 233 KLFNFRFLRSGFLRKVRKQLDVAAK---GTYILNRDFDTMGRLVARLHDEVEHNKVMIQF 289
+ + L + +++ Q +V + GTY+ +D + + L+ RL E+ ++
Sbjct: 241 WIDS---LWKNYENEIKGQTEVFSSMYVGTYVAVQDLNNIKDLIKRLDTEIRGMVKNAEY 297
Query: 290 CLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTSS 346
+ K ++ IK F+K VEELE +C I RAR+ +++ ++ ++
Sbjct: 298 AGELGPVKIGINA---IKTQLEVFKKNVEELEIQADMCSTDIRRARTVILQRIINAT 351
>sp|P23551|XYNA_BUTFI Endo-1,4-beta-xylanase A OS=Butyrivibrio fibrisolvens GN=xynA PE=3
SV=1
Length = 411
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 29/112 (25%)
Query: 152 TNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAH 211
TN K+ ++ Y++ + +V IKL+NY+++ +C A V + +H
Sbjct: 241 TNSVKLFYNDYNTYM--------EVNDVIKLVNYINQGKKVC----------AGVGMQSH 282
Query: 212 ALTALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILN 263
T FP+ + N FLR+GF ++ +LD+ KG Y LN
Sbjct: 283 LGTG---------FPSVDYYTNALN-SFLRAGFEVQI-TELDITNKGDYDLN 323
>sp|Q6KZM3|FTHS_PICTO Formate--tetrahydrofolate ligase OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=fhs
PE=3 SV=1
Length = 535
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 84 YFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIIL 143
Y D A + G++LK+I+D Y R+I +DD E K+ + V N NS+
Sbjct: 391 YSDGGHGALDLAGKVLKSISD--YNPRYIY----GINDDPEEKISKIAMNVYNANSV--- 441
Query: 144 TNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLIN----YVHKASGICITAVCS 199
FS+ + K+I D +S + + + ++ KLIN + K +GI I +
Sbjct: 442 --EFSHDAVKTMKLIKDDFSDLYVCMAKTQSSISDNAKLINVPEGFTVKINGININSGSG 499
Query: 200 LI 201
I
Sbjct: 500 FI 501
>sp|Q7XFE1|U496E_ORYSJ Putative UPF0496 protein 5 OS=Oryza sativa subsp. japonica
GN=Os10g0359200 PE=3 SV=2
Length = 423
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 57/275 (20%), Positives = 119/275 (43%), Gaps = 7/275 (2%)
Query: 54 LLEPDQDTIPSILESAV-LSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFI 112
LL+ +Q+ + +L+ + + P+L DL+ +YF+ S L K+++ R +
Sbjct: 82 LLDMNQEVVRVVLDCKRDVWRSPDLFDLVEDYFEGSLHTLDFLAALDKSLHRARDSQLVL 141
Query: 113 QLALDTADDDQTEPHDKVKLIVSNLNSLIIL---TNPFSNPSTNEFKVIHDKYSSVLHNL 169
LAL + +L S L L PF++ F+ ++ + S++ L
Sbjct: 142 HLALQRHHHEPPAAASASELYASTLGELRQFKAAGEPFTDEFFAAFQTVYRQQMSMVGKL 201
Query: 170 KSKRKKVARKIKLINYVHKASGIC-ITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTK 228
+ +++++ R+++ + + SGI +T+ +L+ + V A A S P
Sbjct: 202 RRRKRRLDRRLRSVRVWRRVSGIVFLTSFAALLVCSVVAAAIAAPPVAAALAAAASMPVG 261
Query: 229 CFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQ 288
K + + L ++ + GT+I +D D++ LV L ++ ++
Sbjct: 262 SAGKWMDSLLKKYQDALHGHKEVVSAMQVGTFIAIKDLDSIRVLVEHLEVQISSMADSVE 321
Query: 289 FCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEH 323
F R+++ + E+KK F K V++L E
Sbjct: 322 FA--ERDEEAVRFGIDEVKKKLELFMKSVDDLGEQ 354
>sp|Q9LHD9|U496C_ARATH UPF0496 protein At3g28270 OS=Arabidopsis thaliana GN=At3g28270 PE=2
SV=1
Length = 374
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 136/322 (42%), Gaps = 23/322 (7%)
Query: 40 PSSPSCRHEKFCEILLEPDQDTIPSI--LESAVLSKVPELKDLLLNYFDISAEASSICGQ 97
SSP H + + L+E Q I +E V LK L+L YF+ + + I
Sbjct: 55 SSSPHDAHMELSKHLVEVTQGVADFITEIEDDVWDNQA-LKYLVLAYFENTKKTLEIFKT 113
Query: 98 LLKNINDVRYEYRFIQLAL-----DTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPS- 151
+ + + I+ AL ++A+ D K + + +L S + +PF
Sbjct: 114 IENCVENAEMGQLLIREALAEFEKESAEKDVGGKKKKYEKTLEDLKSFKEMGDPFDGKVL 173
Query: 152 TNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAH 211
T +F+ I + S+L + RKK+ +I + + + A +++A+A++ L A
Sbjct: 174 TTQFERIKKQQESLLEEVSETRKKIQDEISNLEKKTLITNVVFGAAFAIVAVASIALIAT 233
Query: 212 ALTALLIGPMILS----------FPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYI 261
+ A + + + T KK N + G L+KV + + KG
Sbjct: 234 GVGAAAGFGALAAPLLAAGWAGVYTTLDKKKDALNKQL--EG-LKKVEEIEESVEKGIKT 290
Query: 262 LNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALH-VMKEIKKNHVGFQKQVEEL 320
+T+ LV L D +++ ++ +D +++ A V+ +I K K++ E+
Sbjct: 291 NEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQISKKVEKLTKKITEV 350
Query: 321 EEHVYLCLVTINRARSQVIKEM 342
E V I +AR QV++++
Sbjct: 351 GESVEDHSKLIAKARLQVLQKI 372
>sp|Q17VN6|RPOBC_HELAH Bifunctional DNA-directed RNA polymerase subunit beta-beta'
OS=Helicobacter acinonychis (strain Sheeba) GN=rpoBC PE=3
SV=1
Length = 2890
Score = 34.7 bits (78), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 78 KDLLLNYFDISAEASSICGQ--LLKNINDVRYEYRFIQLALDTADDD---QTEPHDKVKL 132
+D++L + +S E S + G+ L ++N+ I A+DT + D + DK +
Sbjct: 1893 QDMVLGLYYLSLEKSGVKGEHKLFSSVNE-------IITAIDTKELDIHAKIRVLDKGNI 1945
Query: 133 IVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGI 192
I ++ +II + ++ D + L N K+K + L++YVHK GI
Sbjct: 1946 IATSAGRMIIRS------------ILPDFIPTDLWNRPMKKKDIGV---LVDYVHKVGGI 1990
Query: 193 CITA 196
ITA
Sbjct: 1991 GITA 1994
>sp|Q9LVR4|U496F_ARATH UPF0496 protein At5g66660 OS=Arabidopsis thaliana GN=At5g66660 PE=2
SV=1
Length = 398
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 124/295 (42%), Gaps = 32/295 (10%)
Query: 54 LLEPDQDTIPSILES-AVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFI 112
LLE +Q+ + I+ES + K +LK L+ YF +++ C + + I
Sbjct: 94 LLELNQNAVRVIIESREDVWKNKDLKSLVDVYFKSTSKTLDFCNTVENCVKRTEISQLII 153
Query: 113 QLAL-----DTADDD--QTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSV 165
+ A+ ++ D D + K + LN + +PF +F ++D+
Sbjct: 154 RFAVKQFEAESVDTDLGGDKKKKKYTKTLEELNKFKAMGDPFDGELVTQFDSVYDQQVLF 213
Query: 166 LHNLKSKRKKVARKIKLINYVHKASGICITA-----------VCSLIAIAAVVLAAHALT 214
L L+ +R+K+ +K + + + S + ++ A V A T
Sbjct: 214 LEELRKQRRKLDKKQRNVKTLRTVSNVFFATAYVSVLVLSVVATTMSAPPVVCAVASGST 273
Query: 215 ALL-IGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLV 273
A + I S K ++K + R G + + ++ V + + D D + V
Sbjct: 274 APIEITGKWFSQMWKKYEKAVKRQR----GLVLTMESRVQVNNEAMKNIRSDVDELRSWV 329
Query: 274 ARLHDEVEHNKVMIQFCLDRREDKFALHV-MKEIKKNHVGFQKQVEELEEHVYLC 327
+ + + V+ F ++R E++ A+ + M+ IKK+ GF +++EE+ E+ C
Sbjct: 330 SSILETVD-------FAVEREEEEEAMGLAMQGIKKHVDGFTEKMEEVGENAAKC 377
>sp|B2UUV9|RPOBC_HELPS Bifunctional DNA-directed RNA polymerase subunit beta-beta'
OS=Helicobacter pylori (strain Shi470) GN=rpoBC PE=3 SV=1
Length = 2890
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 78 KDLLLNYFDISAEASSICGQ--LLKNINDVRYEYRFIQLALDTADDD---QTEPHDKVKL 132
+D++L + +S E S + G+ L ++N+ I A+DT + D + D+ +
Sbjct: 1893 QDMVLGLYYLSLEKSGVKGEHKLFSSVNE-------IITAIDTKELDIHAKIRVLDQGNI 1945
Query: 133 IVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGI 192
I ++ +II + ++ D + L N K+K + L++YVHK GI
Sbjct: 1946 IATSAGRMIIKS------------ILPDFIPTDLWNRPMKKKDIGV---LVDYVHKVGGI 1990
Query: 193 CITA 196
ITA
Sbjct: 1991 GITA 1994
>sp|Q1CS68|RPOBC_HELPH Bifunctional DNA-directed RNA polymerase subunit beta-beta'
OS=Helicobacter pylori (strain HPAG1) GN=rpoBC PE=3 SV=1
Length = 2890
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 78 KDLLLNYFDISAEASSICGQ--LLKNINDVRYEYRFIQLALDTADDD---QTEPHDKVKL 132
+D++L + +S E S + G+ L ++N+ I A+DT + D + D+ +
Sbjct: 1893 QDMVLGLYYLSLEKSGVKGEHKLFSSVNE-------IITAIDTKELDIHAKIRVLDQGNI 1945
Query: 133 IVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGI 192
I ++ +II + ++ D + L N K+K + L++YVHK GI
Sbjct: 1946 IATSAGRMIIKS------------ILPDFIPTDLWNRPMKKKDIGV---LVDYVHKVGGI 1990
Query: 193 CITA 196
ITA
Sbjct: 1991 GITA 1994
>sp|O25806|RPOBC_HELPY Bifunctional DNA-directed RNA polymerase subunit beta-beta'
OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=rpoBC PE=1 SV=1
Length = 2890
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 78 KDLLLNYFDISAEASSICGQ--LLKNINDVRYEYRFIQLALDTADDD---QTEPHDKVKL 132
+D++L + +S E S + G+ L ++N+ I A+DT + D + D+ +
Sbjct: 1893 QDMVLGLYYLSLEKSGVKGEHKLFSSVNE-------IITAIDTKELDIHAKIRVLDQGNI 1945
Query: 133 IVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGI 192
I ++ +II + ++ D + L N K+K + L++YVHK GI
Sbjct: 1946 IATSAGRMIIKS------------ILPDFIPTDLWNRPMKKKDIGV---LVDYVHKVGGI 1990
Query: 193 CITA 196
ITA
Sbjct: 1991 GITA 1994
>sp|Q9ZK23|RPOBC_HELPJ Bifunctional DNA-directed RNA polymerase subunit beta-beta'
OS=Helicobacter pylori (strain J99) GN=rpoBC PE=3 SV=1
Length = 2890
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 78 KDLLLNYFDISAEASSICGQ--LLKNINDVRYEYRFIQLALDTADDD---QTEPHDKVKL 132
+D++L + +S E S + G+ L ++N+ I A+DT + D + D+ +
Sbjct: 1893 QDMVLGLYYLSLEKSGVKGEHKLFSSVNE-------IITAIDTKELDIHAKIRVLDQGNI 1945
Query: 133 IVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGI 192
I ++ +II + ++ D + L N K+K + L++YVHK GI
Sbjct: 1946 IATSAGRMIIKS------------ILPDFIPTDLWNRPMKKKDIGV---LVDYVHKVGGI 1990
Query: 193 CITA 196
ITA
Sbjct: 1991 GITA 1994
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,553,094
Number of Sequences: 539616
Number of extensions: 4596229
Number of successful extensions: 13581
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 13517
Number of HSP's gapped (non-prelim): 55
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)