Query 045225
Match_columns 353
No_of_seqs 101 out of 108
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 11:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05055 DUF677: Protein of un 100.0 5.3E-92 1.1E-96 687.9 32.5 301 35-342 21-336 (336)
2 PF05633 DUF793: Protein of un 99.8 8.2E-19 1.8E-23 174.3 19.0 272 47-341 69-388 (389)
3 PF05055 DUF677: Protein of un 97.6 0.013 2.8E-07 58.5 20.7 91 159-253 145-243 (336)
4 PF03087 DUF241: Arabidopsis p 95.8 1.7 3.7E-05 41.1 23.6 43 78-120 31-73 (231)
5 PF04156 IncA: IncA protein; 82.8 35 0.00077 30.6 14.8 20 264-283 95-114 (191)
6 TIGR02894 DNA_bind_RsfA transc 70.1 84 0.0018 28.5 11.1 42 299-340 116-157 (161)
7 PF05478 Prominin: Prominin; 66.1 91 0.002 34.8 12.9 97 243-344 187-289 (806)
8 PF06103 DUF948: Bacterial pro 63.2 67 0.0014 25.4 8.4 25 301-325 61-85 (90)
9 cd02433 Nodulin-21_like_2 Nodu 60.8 35 0.00075 32.4 7.4 64 254-317 65-135 (234)
10 cd02434 Nodulin-21_like_3 Nodu 59.8 31 0.00067 32.5 6.8 65 255-319 49-120 (225)
11 PF14712 Snapin_Pallidin: Snap 55.2 87 0.0019 24.8 7.8 69 98-177 19-88 (92)
12 PF03511 Fanconi_A: Fanconi an 53.4 15 0.00033 28.0 2.9 36 76-111 12-52 (64)
13 KOG4191 Histone acetyltransfer 51.0 1.3E+02 0.0028 31.6 9.9 87 243-337 377-468 (516)
14 PF09602 PhaP_Bmeg: Polyhydrox 48.8 2.1E+02 0.0046 26.0 11.4 77 269-345 46-122 (165)
15 PF06072 Herpes_US9: Alphaherp 47.6 70 0.0015 24.3 5.6 9 165-173 14-22 (60)
16 PF05597 Phasin: Poly(hydroxya 47.5 1.2E+02 0.0027 26.3 8.1 54 267-321 68-129 (132)
17 PF01616 Orbi_NS3: Orbivirus N 45.0 1.2E+02 0.0026 28.3 8.0 30 161-190 71-100 (195)
18 smart00502 BBC B-Box C-termina 42.9 1.7E+02 0.0038 23.4 10.4 40 299-338 63-102 (127)
19 smart00787 Spc7 Spc7 kinetocho 42.2 2.9E+02 0.0062 27.5 10.7 134 75-284 49-185 (312)
20 KOG1924 RhoA GTPase effector D 42.0 2.2E+02 0.0047 32.2 10.4 210 103-345 726-937 (1102)
21 PF06103 DUF948: Bacterial pro 42.0 1.1E+02 0.0024 24.1 6.5 8 273-280 56-63 (90)
22 COG5415 Predicted integral mem 41.5 3.2E+02 0.007 26.0 10.3 39 144-182 2-40 (251)
23 PF05508 Ran-binding: RanGTP-b 39.9 1.3E+02 0.0027 30.0 7.7 70 254-327 71-144 (302)
24 PF12761 End3: Actin cytoskele 38.6 1.8E+02 0.0039 27.1 8.1 69 263-342 123-193 (195)
25 PRK11091 aerobic respiration c 38.2 3.7E+02 0.0081 29.2 11.9 35 245-282 87-121 (779)
26 PHA02047 phage lambda Rz1-like 37.7 1.9E+02 0.004 24.2 7.1 42 247-295 38-79 (101)
27 PRK09546 zntB zinc transporter 37.1 4E+02 0.0088 25.9 13.5 94 77-177 148-246 (324)
28 PF05461 ApoL: Apolipoprotein 36.3 4.4E+02 0.0096 26.2 20.3 13 313-325 195-207 (313)
29 cd02432 Nodulin-21_like_1 Nodu 36.1 1.7E+02 0.0038 27.4 7.8 45 266-310 66-116 (218)
30 PF07889 DUF1664: Protein of u 35.6 2.3E+02 0.0049 24.6 7.8 11 243-253 43-53 (126)
31 PF13887 MRF_C1: Myelin gene r 34.4 47 0.001 22.7 2.6 23 300-322 13-35 (36)
32 KOG0971 Microtubule-associated 33.4 5.8E+02 0.013 29.5 12.1 106 245-351 433-554 (1243)
33 TIGR02977 phageshock_pspA phag 33.4 4E+02 0.0086 24.7 10.1 28 270-297 58-85 (219)
34 PF01552 Pico_P2B: Picornaviru 32.8 81 0.0017 26.3 4.4 23 142-164 9-31 (99)
35 PF07851 TMPIT: TMPIT-like pro 32.7 1.3E+02 0.0028 30.3 6.6 45 299-344 9-53 (330)
36 PRK11352 regulator protein Frm 32.7 2.7E+02 0.0059 22.6 8.5 65 274-344 16-84 (91)
37 PF04568 IATP: Mitochondrial A 32.3 69 0.0015 26.7 3.9 23 303-325 74-100 (100)
38 PF04048 Sec8_exocyst: Sec8 ex 31.6 1.2E+02 0.0025 26.4 5.5 71 107-177 19-89 (142)
39 cd02435 CCC1 CCC1. CCC1: This 31.6 2E+02 0.0043 27.4 7.5 63 254-316 66-137 (241)
40 PF09177 Syntaxin-6_N: Syntaxi 31.5 1.2E+02 0.0026 24.4 5.2 28 299-326 37-64 (97)
41 PF15290 Syntaphilin: Golgi-lo 31.2 1E+02 0.0022 30.5 5.4 32 303-334 126-157 (305)
42 PRK15039 transcriptional repre 30.3 3E+02 0.0065 22.4 7.7 52 274-331 16-68 (90)
43 PF05816 TelA: Toxic anion res 29.2 4.1E+02 0.0088 26.3 9.6 46 245-290 93-142 (333)
44 PF12729 4HB_MCP_1: Four helix 28.5 3.4E+02 0.0074 22.4 9.2 93 201-324 9-102 (181)
45 PLN02372 violaxanthin de-epoxi 27.6 3.7E+02 0.008 28.1 8.9 72 271-344 361-439 (455)
46 PF04012 PspA_IM30: PspA/IM30 27.2 4.9E+02 0.011 23.8 10.4 50 248-297 35-84 (221)
47 PF09943 DUF2175: Uncharacteri 26.9 1.8E+02 0.0039 24.4 5.4 51 264-318 45-95 (101)
48 PF09537 DUF2383: Domain of un 26.3 2.3E+02 0.005 22.9 6.1 54 267-324 4-61 (111)
49 PF04156 IncA: IncA protein; 25.5 4.8E+02 0.01 23.2 14.7 33 245-277 90-122 (191)
50 COG1283 NptA Na+/phosphate sym 25.4 8.4E+02 0.018 26.3 11.4 40 254-293 314-353 (533)
51 PF10168 Nup88: Nuclear pore c 25.2 3.1E+02 0.0068 30.4 8.5 26 299-324 690-715 (717)
52 COG4026 Uncharacterized protei 24.1 6.6E+02 0.014 24.3 9.4 121 203-333 39-174 (290)
53 PF04888 SseC: Secretion syste 23.3 5E+02 0.011 25.1 8.8 9 155-163 24-32 (306)
54 PF10337 DUF2422: Protein of u 22.6 4.6E+02 0.01 27.0 8.9 37 299-335 372-408 (459)
55 PRK11020 hypothetical protein; 21.8 3.8E+02 0.0082 23.0 6.5 49 270-322 4-52 (118)
56 PF07730 HisKA_3: Histidine ki 21.5 3.2E+02 0.0069 19.7 7.4 53 271-331 4-56 (68)
57 KOG2856 Adaptor protein PACSIN 21.2 5.6E+02 0.012 26.5 8.6 66 270-344 176-241 (472)
58 PF06657 Cep57_MT_bd: Centroso 21.2 4.2E+02 0.009 20.9 6.5 60 267-327 13-76 (79)
59 PF08700 Vps51: Vps51/Vps67; 21.1 3.9E+02 0.0084 20.5 6.8 62 264-325 19-82 (87)
60 PF14723 SSFA2_C: Sperm-specif 21.0 1E+02 0.0022 28.3 3.1 25 303-327 107-131 (179)
61 COG4023 SBH1 Preprotein transl 20.9 1E+02 0.0022 23.2 2.6 15 199-213 40-54 (57)
62 PF07243 Phlebovirus_G1: Phleb 20.6 2.2E+02 0.0049 30.4 6.0 50 187-236 418-470 (526)
63 COG5074 t-SNARE complex subuni 20.5 4.3E+02 0.0094 25.6 7.3 33 170-202 230-262 (280)
64 PF12711 Kinesin-relat_1: Kine 20.4 3.7E+02 0.008 21.8 6.0 27 267-293 27-53 (86)
65 PF06072 Herpes_US9: Alphaherp 20.1 4E+02 0.0087 20.3 6.2 7 192-198 34-40 (60)
66 KOG0980 Actin-binding protein 20.0 6.4E+02 0.014 28.9 9.5 61 261-323 456-516 (980)
No 1
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=100.00 E-value=5.3e-92 Score=687.91 Aligned_cols=301 Identities=42% Similarity=0.582 Sum_probs=280.8
Q ss_pred cccCCCCCCCcchHHHhhhhcCCCcccHHHHHhcc-ccCCCchHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHhHHHH
Q 045225 35 LFVTEPSSPSCRHEKFCEILLEPDQDTIPSILESA-VLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQ 113 (353)
Q Consensus 35 ~~~~~~s~~~~s~~~~~~~LLep~qe~v~~il~~~-~~~~~~~l~~Lv~~YFd~S~~a~d~C~~L~~~I~~aR~~y~~i~ 113 (353)
.+++.+|.|.+||++|++||||||||||++||+++ ++|++|+|++||++|||+|++||+||++|++||+|||.+|++|+
T Consensus 21 ~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~ 100 (336)
T PF05055_consen 21 TGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIR 100 (336)
T ss_pred hccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35566677889999999999999999999999998 59999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCC-----CchhHHHHHHHHHhhHhhcCCCCCc-chhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 045225 114 LALDTADDDQTE-----PHDKVKLIVSNLNSLIILTNPFSNP-STNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVH 187 (353)
Q Consensus 114 ~aL~~~~~~~~~-----~~~~~~~~~~eL~~F~~~~nPF~~~-~~~~F~~i~~~~~~LL~~L~~~k~K~~~Klr~~r~~~ 187 (353)
++|++|+.++.+ ++++|++|+++|++|++++|||+++ ++.+||+||++|++||++|+++|+|+++|+|++|+|+
T Consensus 101 ~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~ 180 (336)
T PF05055_consen 101 RALKQFEKESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWR 180 (336)
T ss_pred HHHHhhhhccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887643 3688999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHH---HH---Hhhhccc-ccccchhHHhhhhhhhhhchhHHHHHHHHHHhhhhcce
Q 045225 188 KASGICITAVCSLIAIAAVVLAAHAL---TA---LLIGPMI-LSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTY 260 (353)
Q Consensus 188 ~vs~~~fvaa~~~v~i~~vV~Aah~v---~~---l~a~P~~-~~~~~~~~~kk~~~~~~~~~~~~~~l~~Qld~aakGty 260 (353)
++|++|||+++++|+|++||+|+|++ +| ++++|.+ +|+|++++|++++ +.++++++|+|+|+||||
T Consensus 181 kvs~v~fvaa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k~~-------~al~~~~~~l~~aakGty 253 (336)
T PF05055_consen 181 KVSNVCFVAAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKKYE-------EALKKQKEQLDAAAKGTY 253 (336)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHhccc
Confidence 99999999999999999999998643 23 3335664 6789998888765 457889999999999999
Q ss_pred ecccccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045225 261 ILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKF-ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVI 339 (353)
Q Consensus 261 il~~DldTIs~LV~RL~deIe~~~~~v~fave~~e~~~-vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInraR~lVL 339 (353)
|+++||||||+||+||+|+|||++++|+||++++++++ +++||+||+|++++|++||||||||||+||+||||||++||
T Consensus 254 I~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrAR~lVl 333 (336)
T PF05055_consen 254 ILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRARTLVL 333 (336)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887 99999999999999999999999999999999999999999
Q ss_pred HHH
Q 045225 340 KEM 342 (353)
Q Consensus 340 ~~I 342 (353)
|+|
T Consensus 334 q~I 336 (336)
T PF05055_consen 334 QEI 336 (336)
T ss_pred hhC
Confidence 998
No 2
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=99.81 E-value=8.2e-19 Score=174.34 Aligned_cols=272 Identities=17% Similarity=0.210 Sum_probs=197.7
Q ss_pred hHHHhhhhcCCCcccHHHHHhccc-cCCCchHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHhHHHHHHHhhccCCCCC
Q 045225 47 HEKFCEILLEPDQDTIPSILESAV-LSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTE 125 (353)
Q Consensus 47 ~~~~~~~LLep~qe~v~~il~~~~-~~~~~~l~~Lv~~YFd~S~~a~d~C~~L~~~I~~aR~~y~~i~~aL~~~~~~~~~ 125 (353)
.+.+.+.++.-..|.=..|.+.+. .-.+|.+.+||++|||.|.|++|+||++..+|.+.|..|++++-|++.++.....
T Consensus 69 ~~~~ld~~l~~~~efr~li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~~~ 148 (389)
T PF05633_consen 69 MRKALDSFLCCHEEFRALITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSSRPL 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344444554433333333333332 2234669999999999999999999999999999999999999999999776444
Q ss_pred CchhHHHHHHHHHhhHhhc--C---C----------C----------CC----cchhhHHH------HHHhHHHHHHHHH
Q 045225 126 PHDKVKLIVSNLNSLIILT--N---P----------F----------SN----PSTNEFKV------IHDKYSSVLHNLK 170 (353)
Q Consensus 126 ~~~~~~~~~~eL~~F~~~~--n---P----------F----------~~----~~~~~F~~------i~~~~~~LL~~L~ 170 (353)
++.++.++...|..+..+. + + | +. .....|++ -.=.++.+|+.
T Consensus 149 ~~~~~rRAr~aL~dl~~~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~-- 226 (389)
T PF05633_consen 149 GEGQLRRARKALSDLKIAMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQA-- 226 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHH--
Confidence 6668887777777765311 0 0 0 00 01123443 23345566666
Q ss_pred HHHHHHHHHHhhhhHhh-----hhhchhhHHHHHHHHHHHHHHHH-HHH-HHHhh----hcccccccchhHHhhhhhhhh
Q 045225 171 SKRKKVARKIKLINYVH-----KASGICITAVCSLIAIAAVVLAA-HAL-TALLI----GPMILSFPTKCFKKKLFNFRF 239 (353)
Q Consensus 171 ~~k~K~~~Klr~~r~~~-----~vs~~~fvaa~~~v~i~~vV~Aa-h~v-~~l~a----~P~~~~~~~~~~~kk~~~~~~ 239 (353)
+...|-.+|.-. .+-..+|++.+++|+||++++|| +.- -|+.+ .| ..+.|..++
T Consensus 227 -----m~~nL~~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP-~~~~WA~s~--------- 291 (389)
T PF05633_consen 227 -----MGENLVLPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVP-RQFSWAPSF--------- 291 (389)
T ss_pred -----HHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHeeecCCccccCCCCCCc-cccccchHH---------
Confidence 566666665533 23468999999999999999987 211 13321 23 246788776
Q ss_pred hchhHHHHHHHHHHhh-hhcceecccccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 045225 240 LRSGFLRKVRKQLDVA-AKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVE 318 (353)
Q Consensus 240 ~~~~~~~~l~~Qld~a-akGtyil~~DldTIs~LV~RL~deIe~~~~~v~fave~~e~~~vk~vv~elkk~~~~f~~qle 318 (353)
...++++.++.+.. .||...+.++|+.|.+.|++|++-++. ++|.++.++.+.+++.|+||.+..+.+.++|+
T Consensus 292 --~~LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~vr~L~el~d~----~~~p~~~e~~~ev~~~V~EL~~~~~~L~~GLd 365 (389)
T PF05633_consen 292 --ISLQERINEEIKKKERKGSCGLLKELQQVEASVRELHELIDS----FQFPLEEEKEEEVREAVEELARVCEALSQGLD 365 (389)
T ss_pred --HHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHh----ccCCcchhHHHHHHHHHHHHHHHHHHHHcccH
Confidence 36778899999987 578999999999999999999977764 46777664444599999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045225 319 ELEEHVYLCLVTINRARSQVIKE 341 (353)
Q Consensus 319 eLeehv~lCf~tInraR~lVL~~ 341 (353)
.||.+|+.-|+.|-++|+-+|.-
T Consensus 366 pLerqVre~Fh~IV~sR~elLd~ 388 (389)
T PF05633_consen 366 PLERQVREVFHRIVRSRTELLDS 388 (389)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhc
Confidence 99999999999999999998863
No 3
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=97.58 E-value=0.013 Score=58.47 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=40.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhh-hHhhhhhchhhH--HHHHHHHHHHHHHHHHHHHHHhhhcc-----cccccchhH
Q 045225 159 HDKYSSVLHNLKSKRKKVARKIKLI-NYVHKASGICIT--AVCSLIAIAAVVLAAHALTALLIGPM-----ILSFPTKCF 230 (353)
Q Consensus 159 ~~~~~~LL~~L~~~k~K~~~Klr~~-r~~~~vs~~~fv--aa~~~v~i~~vV~Aah~v~~l~a~P~-----~~~~~~~~~ 230 (353)
..++.++-++-.+..+|++++.+-+ |..|.+...--+ +.|++.+ ++|++++.++++.++.|. .++.|++++
T Consensus 145 ~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~-~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~ 223 (336)
T PF05055_consen 145 FHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWRKVSNVCFVAAF-VAVAIASVVAAAHAVPAVVALAAALAAPIGSV 223 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHccchHHH
Confidence 4555555555555555555333222 222222222222 2222222 233334444444432221 235788877
Q ss_pred HhhhhhhhhhchhHHHHHHHHHH
Q 045225 231 KKKLFNFRFLRSGFLRKVRKQLD 253 (353)
Q Consensus 231 ~kk~~~~~~~~~~~~~~l~~Qld 253 (353)
+||.... ..++.+++++|.+
T Consensus 224 gkw~~~~---~~k~~~al~~~~~ 243 (336)
T PF05055_consen 224 GKWCGSL---WKKYEEALKKQKE 243 (336)
T ss_pred hHHHHHH---HHHHHHHHHHHHH
Confidence 7776543 2355555655543
No 4
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=95.83 E-value=1.7 Score=41.06 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHhHHHHHHHhhcc
Q 045225 78 KDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTAD 120 (353)
Q Consensus 78 ~~Lv~~YFd~S~~a~d~C~~L~~~I~~aR~~y~~i~~aL~~~~ 120 (353)
..+|++..|.|..-+|+|+.....+-+.+.+.+-+|.+|.-=+
T Consensus 31 ~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~ 73 (231)
T PF03087_consen 31 EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRD 73 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6899999999999999999999999999999999999886543
No 5
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.77 E-value=35 Score=30.57 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=9.4
Q ss_pred cccccHHHHHHHHHHHHhhh
Q 045225 264 RDFDTMGRLVARLHDEVEHN 283 (353)
Q Consensus 264 ~DldTIs~LV~RL~deIe~~ 283 (353)
++++.++..+..+..+++..
T Consensus 95 ~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKL 114 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 6
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=70.06 E-value=84 Score=28.46 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045225 299 ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIK 340 (353)
Q Consensus 299 vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInraR~lVL~ 340 (353)
++.-+++|.+....+.+.+..++|---.-+..++|||.+++.
T Consensus 116 l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~~ 157 (161)
T TIGR02894 116 LQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAVV 157 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677777777777777777788888899999999998864
No 7
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=66.09 E-value=91 Score=34.81 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhhhhcce-----ecccccccHHHH-HHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHH
Q 045225 243 GFLRKVRKQLDVAAKGTY-----ILNRDFDTMGRL-VARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQ 316 (353)
Q Consensus 243 ~~~~~l~~Qld~aakGty-----il~~DldTIs~L-V~RL~deIe~~~~~v~fave~~e~~~vk~vv~elkk~~~~f~~q 316 (353)
++++....|++..-.=.| -+..|||++..+ ..+++++++. .+.-.+++--+ +...|++.+.........
T Consensus 187 ~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~lg~~i~~~l~~---~~~~~L~~i~~--l~~~~~~~~~~L~~v~~~ 261 (806)
T PF05478_consen 187 TFLNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLLGGDIQDQLGS---NVYPALDSILD--LAQAMQETKELLQNVNSS 261 (806)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh---hhHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 455555566663211101 134677777654 4567776654 33333333111 222555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045225 317 VEELEEHVYLCLVTINRARSQVIKEMVT 344 (353)
Q Consensus 317 leeLeehv~lCf~tInraR~lVL~~I~~ 344 (353)
+++|-+.....-..+...|+-+..-+..
T Consensus 262 ~~~L~~~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 262 LKDLQEYQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555544
No 8
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=63.20 E-value=67 Score=25.41 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Q 045225 301 HVMKEIKKNHVGFQKQVEELEEHVY 325 (353)
Q Consensus 301 ~vv~elkk~~~~f~~qleeLeehv~ 325 (353)
+-++...++...+.+.++++++-+.
T Consensus 61 ~dv~~k~~~v~~~~~~v~~~g~~v~ 85 (90)
T PF06103_consen 61 EDVNEKLEKVDPVFEAVADLGESVS 85 (90)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555443
No 9
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=60.78 E-value=35 Score=32.45 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=39.7
Q ss_pred hhhhcceeccc-ccccHHHHHHHHHHHHhhh-----HHHHHHHHhhhhhhH-HHHHHHHHHHhhhhHHHHH
Q 045225 254 VAAKGTYILNR-DFDTMGRLVARLHDEVEHN-----KVMIQFCLDRREDKF-ALHVMKEIKKNHVGFQKQV 317 (353)
Q Consensus 254 ~aakGtyil~~-DldTIs~LV~RL~deIe~~-----~~~v~fave~~e~~~-vk~vv~elkk~~~~f~~ql 317 (353)
+|+-|-|+-.+ +-|.+...++|=+.++++. ..+++.-.++|-++. .+.+++++.++.+.+.+.+
T Consensus 65 SMa~GeYls~kse~d~~~~~~~re~~~i~~~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~ 135 (234)
T cd02433 65 SMAAGEYVSVTSQRELLEASIPDERRELRKHPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTL 135 (234)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHH
Confidence 45556666544 3566666666666666542 344555555555555 8888999988877776543
No 10
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=59.76 E-value=31 Score=32.47 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=36.5
Q ss_pred hhhcceeccc-ccccHHHHHHHHHHHHhhhH-----HHHHHHHhhhhhhH-HHHHHHHHHHhhhhHHHHHHH
Q 045225 255 AAKGTYILNR-DFDTMGRLVARLHDEVEHNK-----VMIQFCLDRREDKF-ALHVMKEIKKNHVGFQKQVEE 319 (353)
Q Consensus 255 aakGtyil~~-DldTIs~LV~RL~deIe~~~-----~~v~fave~~e~~~-vk~vv~elkk~~~~f~~qlee 319 (353)
|+-|.|+-.+ +-|...+..+|-..++++.. .+.+.-..+|-.+. .+.+++++-++.+.|.+.+-.
T Consensus 49 Ma~GeYls~kse~d~~~~e~~re~~~i~~~pe~E~~el~~iy~~kG~~~~~a~~v~~~l~~~~~~~~~~m~~ 120 (225)
T cd02434 49 MAAGEYVSTKAERDFLHSEKKREEWEIENYPEGEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLFVDIMMT 120 (225)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCchhhHHHHHH
Confidence 3444444333 24455555566666664432 23444444444444 788888998888887775544
No 11
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=55.18 E-value=87 Score=24.76 Aligned_cols=69 Identities=17% Similarity=0.312 Sum_probs=43.6
Q ss_pred HHHhHHHHHHHhHHHHHHHhhccCCCCCCchhHHHHHHHHHhhHhhcCCCCC-cchhhHHHHHHhHHHHHHHHHHHHHHH
Q 045225 98 LLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSN-PSTNEFKVIHDKYSSVLHNLKSKRKKV 176 (353)
Q Consensus 98 L~~~I~~aR~~y~~i~~aL~~~~~~~~~~~~~~~~~~~eL~~F~~~~nPF~~-~~~~~F~~i~~~~~~LL~~L~~~k~K~ 176 (353)
+...|+.++.+|..+...+.... .-+.++.......+||+. ++......+..+-..+-.++++-++++
T Consensus 19 ~~~~l~el~~sQ~~L~~~i~~~~-----------~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 19 LDQQLQELRQSQEELLQQIDRLN-----------EKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRA 87 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888887776664331 113333333334457754 455557788888888777777777776
Q ss_pred H
Q 045225 177 A 177 (353)
Q Consensus 177 ~ 177 (353)
.
T Consensus 88 ~ 88 (92)
T PF14712_consen 88 D 88 (92)
T ss_pred H
Confidence 5
No 12
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=53.38 E-value=15 Score=28.05 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=27.8
Q ss_pred hHHHHHHHHHH-----hhHHHHHHHHHHHHhHHHHHHHhHH
Q 045225 76 ELKDLLLNYFD-----ISAEASSICGQLLKNINDVRYEYRF 111 (353)
Q Consensus 76 ~l~~Lv~~YFd-----~S~~a~d~C~~L~~~I~~aR~~y~~ 111 (353)
.|..|++.|.. ++.+|+|+|..+++|+++-+.+...
T Consensus 12 SLM~LlSs~l~p~~~~d~~kaldiCaeIL~cLE~R~isWl~ 52 (64)
T PF03511_consen 12 SLMGLLSSYLAPKEGADSLKALDICAEILGCLEKRKISWLV 52 (64)
T ss_pred HHHHHHHHhcCcccccccHHHHHHHHHHHHHHHhCCCcHHH
Confidence 35567777763 5679999999999999988776543
No 13
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=51.04 E-value=1.3e+02 Score=31.64 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHh---hhhcceecccccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhH--HHHHHHHHHHhhhhHHHHH
Q 045225 243 GFLRKVRKQLDV---AAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKF--ALHVMKEIKKNHVGFQKQV 317 (353)
Q Consensus 243 ~~~~~l~~Qld~---aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fave~~e~~~--vk~vv~elkk~~~~f~~ql 317 (353)
+..+|++..|-. ..-|-+-.-.|-|.|+.-.++|..++.- .-++ +..... +..+=+|+.. ..|.+-|
T Consensus 377 s~E~RLK~eL~~~Gll~ded~pasdddDEvlaeLR~lqaeLk~---vS~~---N~k~k~~Ll~la~eE~a~--qe~~q~l 448 (516)
T KOG4191|consen 377 SLESRLKEELIAQGLLEDEDRPASDDDDEVLAELRKLQAELKA---VSAH---NRKKKHDLLRLAPEEMAR--QEFQQVL 448 (516)
T ss_pred CHHHHHHHHHHHhccccccCCCcccchHHHHHHHHHHHHHHHH---HHhh---hHHHHHHHHHhhHHHHHH--HHHHHHH
Confidence 345566655542 2345555667888899888999888843 3222 222222 3334444443 4589999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045225 318 EELEEHVYLCLVTINRARSQ 337 (353)
Q Consensus 318 eeLeehv~lCf~tInraR~l 337 (353)
++|..+|..|+.-+||+|..
T Consensus 449 ddlDkqI~qaYvKr~r~~kk 468 (516)
T KOG4191|consen 449 DDLDKQIEQAYVKRNRSRKK 468 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999975
No 14
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=48.78 E-value=2.1e+02 Score=26.02 Aligned_cols=77 Identities=9% Similarity=0.158 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 045225 269 MGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTS 345 (353)
Q Consensus 269 Is~LV~RL~deIe~~~~~v~fave~~e~~~vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInraR~lVL~~I~~~ 345 (353)
|..+|+-|..+.....+...-.-+.--...-+.....+.......++.+.||+.|+..-..+..++=.-+|.+|.+.
T Consensus 46 itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~~ 122 (165)
T PF09602_consen 46 ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQISKQ 122 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhh
Confidence 55555555555555544332221110000011223334444456777888888888777777777777777777654
No 15
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=47.63 E-value=70 Score=24.29 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 045225 165 VLHNLKSKR 173 (353)
Q Consensus 165 LL~~L~~~k 173 (353)
.|.++-.++
T Consensus 14 FL~RvGr~q 22 (60)
T PF06072_consen 14 FLRRVGRQQ 22 (60)
T ss_pred HHHHHhHHH
Confidence 455543333
No 16
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=47.51 E-value=1.2e+02 Score=26.34 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhhh--------hhhHHHHHHHHHHHhhhhHHHHHHHHH
Q 045225 267 DTMGRLVARLHDEVEHNKVMIQFCLDRR--------EDKFALHVMKEIKKNHVGFQKQVEELE 321 (353)
Q Consensus 267 dTIs~LV~RL~deIe~~~~~v~fave~~--------e~~~vk~vv~elkk~~~~f~~qleeLe 321 (353)
|.+...|..+.+.+.+-..-++-+++.+ .-+ .+.-|++|......+..+|+.|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvP-s~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 68 DQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVP-SRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666655544444433331 111 44456666666666666666654
No 17
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=44.96 E-value=1.2e+02 Score=28.30 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHhhhhh
Q 045225 161 KYSSVLHNLKSKRKKVARKIKLINYVHKAS 190 (353)
Q Consensus 161 ~~~~LL~~L~~~k~K~~~Klr~~r~~~~vs 190 (353)
=+...|.+|+...+++.||-.+++...-++
T Consensus 71 vne~~L~~L~~el~~~kRk~~il~~~~li~ 100 (195)
T PF01616_consen 71 VNEQILPKLKHELRKLKRKRRILHIVELIA 100 (195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999988877744433
No 18
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=42.90 E-value=1.7e+02 Score=23.39 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045225 299 ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQV 338 (353)
Q Consensus 299 vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInraR~lV 338 (353)
+.++=++-+.....+..+++.|+.++..-..+|..+..++
T Consensus 63 l~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 63 LEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444556777777777777777666666665543
No 19
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=42.16 E-value=2.9e+02 Score=27.49 Aligned_cols=134 Identities=15% Similarity=0.211 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHh--hHHHH-HHHHHHHHhHHHHHHHhHHHHHHHhhccCCCCCCchhHHHHHHHHHhhHhhcCCCCCcc
Q 045225 75 PELKDLLLNYFDI--SAEAS-SICGQLLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPS 151 (353)
Q Consensus 75 ~~l~~Lv~~YFd~--S~~a~-d~C~~L~~~I~~aR~~y~~i~~aL~~~~~~~~~~~~~~~~~~~eL~~F~~~~nPF~~~~ 151 (353)
+.+...|..+|-. -.+.. ..|..|.+.|..-|..+.-| +.+ ....||=
T Consensus 49 ~sl~~~v~A~~~~iP~LElY~~sC~EL~~~I~egr~~~~~~-------E~e------------------t~~~nPp---- 99 (312)
T smart00787 49 CSLDQYVVAGYCTVPLLELYQFSCKELKKYISEGRDLFKEI-------EEE------------------TLINNPP---- 99 (312)
T ss_pred CCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH------------------HhhcCcH----
Confidence 4455555443322 23333 46899999999988754444 221 1223332
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhHH
Q 045225 152 TNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFK 231 (353)
Q Consensus 152 ~~~F~~i~~~~~~LL~~L~~~k~K~~~Klr~~r~~~~vs~~~fvaa~~~v~i~~vV~Aah~v~~l~a~P~~~~~~~~~~~ 231 (353)
.|+.-+..- ...|..++..++++|...+.. | -+.|-.+.+
T Consensus 100 --LF~EY~~a~-------~d~r~lm~~Qf~lvK~~aRl~---------------------------a----k~~WYeWR~ 139 (312)
T smart00787 100 --LFKEYFSAS-------PDVKLLMDKQFQLVKTFARLE---------------------------A----KKMWYEWRM 139 (312)
T ss_pred --HHHHHHcCC-------HHHHHHHHHHHHHHHHHHHHH---------------------------H----HHHHHHHHH
Confidence 233333221 334455778888888744421 1 244777655
Q ss_pred hhhhhhhhhchhHHHHHHHHHHhhhhcceecccccccHHHHHHHHHHHHhhhH
Q 045225 232 KKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNK 284 (353)
Q Consensus 232 kk~~~~~~~~~~~~~~l~~Qld~aakGtyil~~DldTIs~LV~RL~deIe~~~ 284 (353)
+.+. |..+.+.+.++.+...--.+.+++.-++.++..|.+.-...+
T Consensus 140 klle-------gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~ 185 (312)
T smart00787 140 KLLE-------GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALE 185 (312)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 334445555566665555677777777777666554444333
No 20
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=42.04 E-value=2.2e+02 Score=32.22 Aligned_cols=210 Identities=16% Similarity=0.168 Sum_probs=95.0
Q ss_pred HHHHHHhHHHHHHHhhccCCCCCCchhHHHHHHHHHhhHhhcCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 045225 103 NDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKL 182 (353)
Q Consensus 103 ~~aR~~y~~i~~aL~~~~~~~~~~~~~~~~~~~eL~~F~~~~nPF~~~~~~~F~~i~~~~~~LL~~L~~~k~K~~~Klr~ 182 (353)
+...-.-..|+.+++.++. ...++.|..+++.+.+...+ .||-.+--+--.|--+|.. +-=|+++
T Consensus 726 ne~vLse~~iqnLik~lPe---------~E~l~~L~e~Kaeye~l~e~--EQF~vvm~~vkrL~pRL~~----ilFKl~f 790 (1102)
T KOG1924|consen 726 NEDVLSESMIQNLIKHLPE---------QEQLNKLSELKAEYEDLPEP--EQFVVVMSQVKRLRPRLSA----ILFKLTF 790 (1102)
T ss_pred cHHHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHhccCCCCH--HHHhHHHhhccccChhHHH----HHHHhhH
Confidence 4455667778888888874 35678888888888888774 4666554443333333322 2222222
Q ss_pred hhHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhHHhhhhhhhhhchhHHHHHHHHHHhhhhcceec
Q 045225 183 INYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYIL 262 (353)
Q Consensus 183 ~r~~~~vs~~~fvaa~~~v~i~~vV~Aah~v~~l~a~P~~~~~~~~~~~kk~~~~~~~~~~~~~~l~~Qld~aakGtyil 262 (353)
--...-+..-+. +..++|-=+=+.-..--++-.-..+|-..++--|. ..++....+++-|+..-.++-+|-|
T Consensus 791 se~vnniKP~i~----avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrN-a~afgF~is~L~kL~dTKsaDqk~T--- 862 (1102)
T KOG1924|consen 791 SEQVNNIKPDIV----AVTAACEELRKSESFSKLLELVLLVGNYMNSGSRN-AQAFGFNISFLCKLRDTKSADQKTT--- 862 (1102)
T ss_pred HHHHhhcChHHH----HHHHHHHHHHhhhhHHHHHHHHHHHhccccccccc-chhhccchHHHHhhccccccchhhH---
Confidence 222111111111 00011111111111111111111133333332222 1122223345555554444434333
Q ss_pred ccccccHHHHHHHHHHHHhhh-HHHHHHHHhhhhhhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045225 263 NRDFDTMGRLVARLHDEVEHN-KVMIQFCLDRREDKF-ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIK 340 (353)
Q Consensus 263 ~~DldTIs~LV~RL~deIe~~-~~~v~fave~~e~~~-vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInraR~lVL~ 340 (353)
|..-|-+..|.. -....|+.+-..-.. .+.-+++|+|+......++..||..+..|-..= -.+....+
T Consensus 863 ---------LLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~-~e~dkF~e 932 (1102)
T KOG1924|consen 863 ---------LLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAG-NEHDKFVE 932 (1102)
T ss_pred ---------HHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cchhhHHH
Confidence 333333333322 122233322211111 444589999999999999999998776652211 13444445
Q ss_pred HHHcc
Q 045225 341 EMVTS 345 (353)
Q Consensus 341 ~I~~~ 345 (353)
+|+.+
T Consensus 933 kM~~F 937 (1102)
T KOG1924|consen 933 KMTSF 937 (1102)
T ss_pred HhhHH
Confidence 55443
No 21
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=41.98 E-value=1.1e+02 Score=24.10 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 045225 273 VARLHDEV 280 (353)
Q Consensus 273 V~RL~deI 280 (353)
++.+-+.+
T Consensus 56 ~n~l~~dv 63 (90)
T PF06103_consen 56 TNELLEDV 63 (90)
T ss_pred HHHHHHHH
Confidence 33333333
No 22
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=41.46 E-value=3.2e+02 Score=26.03 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=18.8
Q ss_pred cCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 045225 144 TNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKL 182 (353)
Q Consensus 144 ~nPF~~~~~~~F~~i~~~~~~LL~~L~~~k~K~~~Klr~ 182 (353)
|+-|+-.+...|..=.++..+=+++++-.-+|++.-+..
T Consensus 2 G~~f~K~~~~~~~~~L~rle~qi~q~~~~~~~~qs~l~~ 40 (251)
T COG5415 2 GSRFDKDFVTKYTADLSRLESQIHQLDVALKKSQSILSQ 40 (251)
T ss_pred CccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444544433344444445555555555555555544443
No 23
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=39.93 E-value=1.3e+02 Score=30.02 Aligned_cols=70 Identities=13% Similarity=0.251 Sum_probs=44.1
Q ss_pred hhhhcceecccccccHHHHHHHHHHHHhhhHHHHHHHHhhhh----hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 045225 254 VAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRRE----DKFALHVMKEIKKNHVGFQKQVEELEEHVYLC 327 (353)
Q Consensus 254 ~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fave~~e----~~~vk~vv~elkk~~~~f~~qleeLeehv~lC 327 (353)
.+++|. -.|++.-.|+..|+.+|.+.-..++-+.+.++ ...-+..++.+.+....+...+||-===++++
T Consensus 71 ~aaRGN----t~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e~~~~~~~~~~~i~~V~~~ik~LL~rId~aiPlinLa 144 (302)
T PF05508_consen 71 IAARGN----TSLESALPLTKDLRREIDSFDERLEEAAEKEELSKSSENQKESIKKVERYIKDLLARIDDAIPLINLA 144 (302)
T ss_pred HHhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 468885 45588889999999999998888877777322 11144555555555555555555443333333
No 24
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=38.61 E-value=1.8e+02 Score=27.12 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=42.0
Q ss_pred ccccccHHHHHHHHHHHHhhhHHHHHHHHhhhh-hhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045225 263 NRDFDTMGRLVARLHDEVEHNKVMIQFCLDRRE-DKF-ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIK 340 (353)
Q Consensus 263 ~~DldTIs~LV~RL~deIe~~~~~v~fave~~e-~~~-vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInraR~lVL~ 340 (353)
.++-+.-..||.+ +.|.++.--+-=+..-+ ... ...-++.++...+...+|++-||.|. +.|..+|+
T Consensus 123 ~~~~~~~~~lvk~---e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L--------~~k~~eL~ 191 (195)
T PF12761_consen 123 RSDTDSKPALVKR---EFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHL--------SSKKQELQ 191 (195)
T ss_pred ccCCcchHHHHHH---HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 4555556667666 66665554332222211 111 33446778888889999999999998 55666666
Q ss_pred HH
Q 045225 341 EM 342 (353)
Q Consensus 341 ~I 342 (353)
..
T Consensus 192 ~L 193 (195)
T PF12761_consen 192 QL 193 (195)
T ss_pred Hh
Confidence 53
No 25
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=38.20 E-value=3.7e+02 Score=29.20 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhcceecccccccHHHHHHHHHHHHhh
Q 045225 245 LRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEH 282 (353)
Q Consensus 245 ~~~l~~Qld~aakGtyil~~DldTIs~LV~RL~deIe~ 282 (353)
+.++..+++.+..+-+-++.++ ...+++|..+++.
T Consensus 87 l~~~~~~l~~~~~~~~~~~~~l---~~~~~~l~~~~~~ 121 (779)
T PRK11091 87 LSRLVAKLEEMRERDLELNVQL---KDNIAQLNQEIAE 121 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4445566666666555554444 4445566555543
No 26
>PHA02047 phage lambda Rz1-like protein
Probab=37.73 E-value=1.9e+02 Score=24.18 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhcceecccccccHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 045225 247 KVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRRE 295 (353)
Q Consensus 247 ~l~~Qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fave~~e 295 (353)
.+..|||.+. .-+.++-.-|..|++.-|--..-++-+++...
T Consensus 38 ~la~qLE~a~-------~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 38 RQTARLEALE-------VRYATLQRHVQAVEARTNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3667777765 23445566778888887777777777777533
No 27
>PRK09546 zntB zinc transporter; Reviewed
Probab=37.13 E-value=4e+02 Score=25.94 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHHHH----HHHhHHHHHHHhhccCCCCCCchhHHHHHHHHHhhHhhcCCC-CCcc
Q 045225 77 LKDLLLNYFDISAEASSICGQLLKNINDV----RYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPF-SNPS 151 (353)
Q Consensus 77 l~~Lv~~YFd~S~~a~d~C~~L~~~I~~a----R~~y~~i~~aL~~~~~~~~~~~~~~~~~~~eL~~F~~~~nPF-~~~~ 151 (353)
+..++..||+.-.+.-+=...|+..|.+- +..-..++.-+-.+.. ......+.+..+....+|+ +.+.
T Consensus 148 ld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr-------~l~p~~~~l~~L~~~~~~~~~~~~ 220 (324)
T PRK09546 148 CDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRR-------YMAPQRDVFARLASERLPWMSDDD 220 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCcccChHH
Confidence 55666778877777766666666655321 1111112222222211 0011122233333334443 4445
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHH
Q 045225 152 TNEFKVIHDKYSSVLHNLKSKRKKVA 177 (353)
Q Consensus 152 ~~~F~~i~~~~~~LL~~L~~~k~K~~ 177 (353)
...|++++++...+++.+++.+..+.
T Consensus 221 ~~~l~Dv~d~~~~~~~~l~~~~~~~~ 246 (324)
T PRK09546 221 RRRMQDIADRLGRGLDDLDACIARTA 246 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66799999998888888877765443
No 28
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=36.31 E-value=4.4e+02 Score=26.17 Aligned_cols=13 Identities=0% Similarity=0.179 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 045225 313 FQKQVEELEEHVY 325 (353)
Q Consensus 313 f~~qleeLeehv~ 325 (353)
+.+.++..+.++.
T Consensus 195 ~~~~~k~i~~~i~ 207 (313)
T PF05461_consen 195 CVQALKGIGKNIR 207 (313)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 29
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=36.15 E-value=1.7e+02 Score=27.38 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=21.2
Q ss_pred cccHHHHHHHHHHHHhhh-----HHHHHHHHhhhhhhH-HHHHHHHHHHhh
Q 045225 266 FDTMGRLVARLHDEVEHN-----KVMIQFCLDRREDKF-ALHVMKEIKKNH 310 (353)
Q Consensus 266 ldTIs~LV~RL~deIe~~-----~~~v~fave~~e~~~-vk~vv~elkk~~ 310 (353)
-|.....++|=+.+|++. ..+.+.-..+|-++. ...+++++-++.
T Consensus 66 ~d~~~~~~~~e~~~i~~~p~~e~~el~~~~~~~G~~~~~a~~~a~~l~~~~ 116 (218)
T cd02432 66 RDTEKADIAKERRELAEDPEAELEELADIYEERGLSPELARQVADELMAKD 116 (218)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC
Confidence 334444444555555443 223333333333433 666677766653
No 30
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.62 E-value=2.3e+02 Score=24.62 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=6.9
Q ss_pred hHHHHHHHHHH
Q 045225 243 GFLRKVRKQLD 253 (353)
Q Consensus 243 ~~~~~l~~Qld 253 (353)
+.++.+..|||
T Consensus 43 ~A~~~v~kql~ 53 (126)
T PF07889_consen 43 DAVASVSKQLE 53 (126)
T ss_pred HHHHHHHHHHH
Confidence 44556677777
No 31
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=34.43 E-value=47 Score=22.71 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Q 045225 300 LHVMKEIKKNHVGFQKQVEELEE 322 (353)
Q Consensus 300 k~vv~elkk~~~~f~~qleeLee 322 (353)
--+++||.|-..++...+++||.
T Consensus 13 V~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 13 VGAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHHhccHHHHHHHHhh
Confidence 35789999999999999999985
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.43 E-value=5.8e+02 Score=29.49 Aligned_cols=106 Identities=23% Similarity=0.292 Sum_probs=67.4
Q ss_pred HHHHHHHHHhh----hhcceecccccccHHHHHHHHHHHHhhhHHHHHHH---Hhh-hhhhH-HHHHHHHHHHhhhhHHH
Q 045225 245 LRKVRKQLDVA----AKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFC---LDR-REDKF-ALHVMKEIKKNHVGFQK 315 (353)
Q Consensus 245 ~~~l~~Qld~a----akGtyil~~DldTIs~LV~RL~deIe~~~~~v~fa---ve~-~e~~~-vk~vv~elkk~~~~f~~ 315 (353)
..-+++|.|++ +.=+-..-+-| ++..-|.-|+++|+-+-++-+.- +|. .+-+. +.+-++.++.+...+.+
T Consensus 433 iadlkEQVDAAlGAE~MV~qLtdknl-nlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~ 511 (1243)
T KOG0971|consen 433 IADLKEQVDAALGAEEMVEQLTDKNL-NLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQK 511 (1243)
T ss_pred HHHHHHHHHHhhcHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34477888865 22222332333 45667888888887766554332 222 11122 66666677777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHcc-ccchhh
Q 045225 316 QVEELEEHVYLCLVTINRARSQV------IKEMVTS-SSCVEE 351 (353)
Q Consensus 316 qleeLeehv~lCf~tInraR~lV------L~~I~~~-~~~~~~ 351 (353)
+++.=-||+|-..-||-+-|-+| +++..+. .|+++|
T Consensus 512 r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseee 554 (1243)
T KOG0971|consen 512 RVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEE 554 (1243)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 88888999999999999999886 4444444 355554
No 33
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=33.41 E-value=4e+02 Score=24.72 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhh
Q 045225 270 GRLVARLHDEVEHNKVMIQFCLDRREDK 297 (353)
Q Consensus 270 s~LV~RL~deIe~~~~~v~fave~~e~~ 297 (353)
.+-++.+...++.+-.-+..|+..|++.
T Consensus 58 e~~~~~~~~~~~~~~~~A~~Al~~G~Ed 85 (219)
T TIGR02977 58 ERRVSRLEAQVADWQEKAELALSKGRED 85 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3444555555566666666677666543
No 34
>PF01552 Pico_P2B: Picornavirus 2B protein; InterPro: IPR002527 Poliovirus infection leads to drastic alterations in membrane permeability late during infection. Proteins 2B and 2BC enhance membrane permeability [, ].; GO: 0000166 nucleotide binding, 0003968 RNA-directed RNA polymerase activity, 0005198 structural molecule activity, 0008233 peptidase activity, 0008234 cysteine-type peptidase activity, 0016740 transferase activity, 0016779 nucleotidyltransferase activity, 0016787 hydrolase activity, 0018144 RNA-protein covalent cross-linking, 0019012 virion
Probab=32.81 E-value=81 Score=26.32 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=12.1
Q ss_pred hhcCCCCCcchhhHHHHHHhHHH
Q 045225 142 ILTNPFSNPSTNEFKVIHDKYSS 164 (353)
Q Consensus 142 ~~~nPF~~~~~~~F~~i~~~~~~ 164 (353)
..||-|...|..+...--++..+
T Consensus 9 ~LG~AFG~Gft~~I~~~i~~i~~ 31 (99)
T PF01552_consen 9 QLGNAFGTGFTDQIKDKIQEIKP 31 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777766665544433333333
No 35
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.71 E-value=1.3e+02 Score=30.27 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045225 299 ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVT 344 (353)
Q Consensus 299 vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInraR~lVL~~I~~ 344 (353)
++.--++|++.+..+.+.++|+++.-..|...|.+-|.-+ +++..
T Consensus 9 L~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrL-k~L~~ 53 (330)
T PF07851_consen 9 LQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRL-KELKK 53 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 6777899999999999999999999999999999988764 55544
No 36
>PRK11352 regulator protein FrmR; Provisional
Probab=32.71 E-value=2.7e+02 Score=22.61 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHc
Q 045225 274 ARLHDEVEHNKVMIQFCLDRREDKF-ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTIN---RARSQVIKEMVT 344 (353)
Q Consensus 274 ~RL~deIe~~~~~v~fave~~e~~~-vk~vv~elkk~~~~f~~qleeLeehv~lCf~tIn---raR~lVL~~I~~ 344 (353)
+|.+-.|.....|+ +++.++. +-.=+...+.-..+++. .=|+.|+..|+..-. .-+...++++..
T Consensus 16 ~Ri~GQv~gi~~Mi----e~~~~C~dil~Ql~Avr~Al~~~~~--~ile~hl~~cv~~~~~~~~~~~~~i~el~~ 84 (91)
T PRK11352 16 RRIRGQIDALERSL----EGDAECRAILQQIAAVRGAANGLMA--EVLESHIRETFDRNDCYSREVSQSVDDTIE 84 (91)
T ss_pred HHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhccCccchHHHHHHHHH
Confidence 44444454444444 4445542 22223333333343333 348899999988764 125566666543
No 37
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=32.30 E-value=69 Score=26.72 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=14.3
Q ss_pred HHHHHHhhhh----HHHHHHHHHHHHH
Q 045225 303 MKEIKKNHVG----FQKQVEELEEHVY 325 (353)
Q Consensus 303 v~elkk~~~~----f~~qleeLeehv~ 325 (353)
++.||++... -.++|++||+||+
T Consensus 74 L~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 74 LKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444 6677788888774
No 38
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=31.60 E-value=1.2e+02 Score=26.38 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=41.7
Q ss_pred HHhHHHHHHHhhccCCCCCCchhHHHHHHHHHhhHhhcCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHHH
Q 045225 107 YEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVA 177 (353)
Q Consensus 107 ~~y~~i~~aL~~~~~~~~~~~~~~~~~~~eL~~F~~~~nPF~~~~~~~F~~i~~~~~~LL~~L~~~k~K~~ 177 (353)
..+.||..||..++..+.+-+..|....+........-+.--.+..++|...-..|+.++..+...+.++.
T Consensus 19 ~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~ 89 (142)
T PF04048_consen 19 DDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIR 89 (142)
T ss_pred CCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55889999999998765442223332211111121111111124456788888888888888887777665
No 39
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=31.59 E-value=2e+02 Score=27.43 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=26.8
Q ss_pred hhhhcceecccc-cccHHHHHHHHHHHHhhhHH------HHHHHHhhhhhhH-HHHH-HHHHHHhhhhHHHH
Q 045225 254 VAAKGTYILNRD-FDTMGRLVARLHDEVEHNKV------MIQFCLDRREDKF-ALHV-MKEIKKNHVGFQKQ 316 (353)
Q Consensus 254 ~aakGtyil~~D-ldTIs~LV~RL~deIe~~~~------~v~fave~~e~~~-vk~v-v~elkk~~~~f~~q 316 (353)
+|+-|-|+-.+. -|.....++|-+.++++... +.+.-.++|-.+. ...+ .+.+.++.+.+.+.
T Consensus 66 SMa~GeYlS~~sq~d~~~~~~~~e~~~i~~~~~~E~~e~l~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~ 137 (241)
T cd02435 66 SMGLGGYLAAKSERDHYQREHKRKQEAVEASPSTEQEEIILYDLVQYGLVPLETAASTVTDLRKNPQALVDF 137 (241)
T ss_pred HHHHhhHHHhhhhHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhChhHHHHH
Confidence 344455554332 44444444555554443322 3333333433332 3333 33566554444343
No 40
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=31.45 E-value=1.2e+02 Score=24.44 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 045225 299 ALHVMKEIKKNHVGFQKQVEELEEHVYL 326 (353)
Q Consensus 299 vk~vv~elkk~~~~f~~qleeLeehv~l 326 (353)
.+..-++|+........+|+||++-|.-
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666665544
No 41
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.21 E-value=1e+02 Score=30.45 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045225 303 MKEIKKNHVGFQKQVEELEEHVYLCLVTINRA 334 (353)
Q Consensus 303 v~elkk~~~~f~~qleeLeehv~lCf~tInra 334 (353)
|+|||.-.+.-...|-|=...|-.+|.+||--
T Consensus 126 IkQLkQvieTmrssL~ekDkGiQKYFvDINiQ 157 (305)
T PF15290_consen 126 IKQLKQVIETMRSSLAEKDKGIQKYFVDINIQ 157 (305)
T ss_pred HHHHHHHHHHHHhhhchhhhhHHHHHhhhhhh
Confidence 45555555666666777788899999999854
No 42
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=30.34 E-value=3e+02 Score=22.40 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=26.7
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045225 274 ARLHDEVEHNKVMIQFCLDRREDKF-ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTI 331 (353)
Q Consensus 274 ~RL~deIe~~~~~v~fave~~e~~~-vk~vv~elkk~~~~f~~qleeLeehv~lCf~tI 331 (353)
+|.+-.|++...|+ +.+.++. +-.-+.-.+.-..+++..+ |+.|+..|...-
T Consensus 16 ~RIeGQv~gI~~Mi----ee~~~C~dIl~Ql~Avr~Al~~~~~~v--l~~hl~~cv~~~ 68 (90)
T PRK15039 16 SKIQGQVVALKKML----DEPHECAAVLQQIAAIRGAVNGLMREV--IKGHLTEHIVHQ 68 (90)
T ss_pred HHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcc
Confidence 44444555555554 3334443 2222344444445555554 788888886644
No 43
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=29.24 E-value=4.1e+02 Score=26.35 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=37.1
Q ss_pred HHHHHHHHHhh----hhcceecccccccHHHHHHHHHHHHhhhHHHHHHH
Q 045225 245 LRKVRKQLDVA----AKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFC 290 (353)
Q Consensus 245 ~~~l~~Qld~a----akGtyil~~DldTIs~LV~RL~deIe~~~~~v~fa 290 (353)
++.+++|+|.. .+|--.+.+|-.+++.|-..+.+.+..+...+.++
T Consensus 93 y~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag 142 (333)
T PF05816_consen 93 YQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAG 142 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888843 67888899999999999999999988877777655
No 44
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=28.45 E-value=3.4e+02 Score=22.43 Aligned_cols=93 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccchhHHhhhhhhhhhchhHHHHHHHHHHhhhhcceecccccccHHHHHHHHHHHH
Q 045225 201 IAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEV 280 (353)
Q Consensus 201 v~i~~vV~Aah~v~~l~a~P~~~~~~~~~~~kk~~~~~~~~~~~~~~l~~Qld~aakGtyil~~DldTIs~LV~RL~deI 280 (353)
.+.++++++.-+++|+++. ..+.++..+.+.+....+..+..+..|..-+.++...+
T Consensus 9 ~~~f~~~~~l~~~~~~~~~-----------------------~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (181)
T PF12729_consen 9 ILGFGLIILLLLIVGIVGL-----------------------YSLSQINQNVEEIYENNLPSIELLNDIRSNLQRIRRAL 65 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHhhhhhhH-HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 045225 281 EHNKVMIQFCLDRREDKF-ALHVMKEIKKNHVGFQKQVEELEEHV 324 (353)
Q Consensus 281 e~~~~~v~fave~~e~~~-vk~vv~elkk~~~~f~~qleeLeehv 324 (353)
-..... .++. .+...+++.+....+.+.+++++...
T Consensus 66 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (181)
T PF12729_consen 66 RRYLLA--------TDPEERQEIEKEIDEARAEIDEALEEYEKLI 102 (181)
T ss_pred HHhhhc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 45
>PLN02372 violaxanthin de-epoxidase
Probab=27.62 E-value=3.7e+02 Score=28.08 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhhHHHH-HHHHhhhhhhHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045225 271 RLVARLHDEVEHNKVMI-QFCLDRREDKFALHVMKEIKKNHV------GFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343 (353)
Q Consensus 271 ~LV~RL~deIe~~~~~v-~fave~~e~~~vk~vv~elkk~~~------~f~~qleeLeehv~lCf~tInraR~lVL~~I~ 343 (353)
-||+||.+.+|..-..+ +-+..-.+ ++..-++++++..+ .|.+.+.+|+...-.-.....+--.-+|+++.
T Consensus 361 ~l~~~l~~~~e~~e~~i~~e~~~~~~--e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~ 438 (455)
T PLN02372 361 PLLERLEKDVEEGEKTIVKEARQIEE--ELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLK 438 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 46777777666543332 22211111 13333333333222 25566777777666666655555555565554
Q ss_pred c
Q 045225 344 T 344 (353)
Q Consensus 344 ~ 344 (353)
.
T Consensus 439 ~ 439 (455)
T PLN02372 439 M 439 (455)
T ss_pred H
Confidence 4
No 46
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=27.16 E-value=4.9e+02 Score=23.79 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHHHHhhhhcceecccccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhh
Q 045225 248 VRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDK 297 (353)
Q Consensus 248 l~~Qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fave~~e~~ 297 (353)
+..++..+.++.--+.-.-..+.+-++.+...++.+-.-+..|+..|++.
T Consensus 35 ~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~ed 84 (221)
T PF04012_consen 35 MEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGRED 84 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 44444444444444444455566667777777777777788888887654
No 47
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=26.94 E-value=1.8e+02 Score=24.40 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=34.2
Q ss_pred cccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 045225 264 RDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVE 318 (353)
Q Consensus 264 ~DldTIs~LV~RL~deIe~~~~~v~fave~~e~~~vk~vv~elkk~~~~f~~qle 318 (353)
.|.-.+.+|.+.|++.|=..+.+-..+ ++++++++++|.+|..+.+.-+|.
T Consensus 45 ~~~~aL~~l~~~l~~~iV~~kel~~~~----~~ee~k~~~~q~rK~~Ek~Aa~LT 95 (101)
T PF09943_consen 45 EDLAALLSLEDYLHEGIVYKKELERLA----ESEEVKKVLRQVRKDLEKNAAKLT 95 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccc----ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888875544443332 344488888888887777665554
No 48
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=26.30 E-value=2.3e+02 Score=22.87 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHH----HHHHHHHHhhhhHHHHHHHHHHHH
Q 045225 267 DTMGRLVARLHDEVEHNKVMIQFCLDRREDKFAL----HVMKEIKKNHVGFQKQVEELEEHV 324 (353)
Q Consensus 267 dTIs~LV~RL~deIe~~~~~v~fave~~e~~~vk----~vv~elkk~~~~f~~qleeLeehv 324 (353)
+++..|+..++|.++.-.+.++-+ +++.++ +...+-+.+...+...|..++...
T Consensus 4 ~~Ln~Ll~~~~d~~~~Y~~a~~~~----~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p 61 (111)
T PF09537_consen 4 EALNDLLKGLHDGIEGYEKAAEKA----EDPELKSLFQEFAQERQQHAEELQAEIQELGGEP 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 456778999999999988888766 233244 444444444455555555555443
No 49
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.52 E-value=4.8e+02 Score=23.16 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhcceecccccccHHHHHHHHH
Q 045225 245 LRKVRKQLDVAAKGTYILNRDFDTMGRLVARLH 277 (353)
Q Consensus 245 ~~~l~~Qld~aakGtyil~~DldTIs~LV~RL~ 277 (353)
+..+..+++....-.+.+..+++........+.
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555666655555555566665555555554
No 50
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=25.41 E-value=8.4e+02 Score=26.27 Aligned_cols=40 Identities=18% Similarity=0.040 Sum_probs=24.9
Q ss_pred hhhhcceecccccccHHHHHHHHHHHHhhhHHHHHHHHhh
Q 045225 254 VAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDR 293 (353)
Q Consensus 254 ~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fave~ 293 (353)
...++.|....-+|+-+.-.....-|+-++-..+.-.+++
T Consensus 314 ~~~~~~~Ld~~~l~sp~~aL~~A~rEvl~~~d~ie~ml~~ 353 (533)
T COG1283 314 DEIEPKHLDETALDSPVVALANAAREVLRLGDSIEQMLER 353 (533)
T ss_pred hhhhHhhccHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777766666666666665555555444444
No 51
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=25.18 E-value=3.1e+02 Score=30.45 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 045225 299 ALHVMKEIKKNHVGFQKQVEELEEHV 324 (353)
Q Consensus 299 vk~vv~elkk~~~~f~~qleeLeehv 324 (353)
+++++++.-++-....+++..+..|+
T Consensus 690 I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 690 IKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777777777777777777777665
No 52
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.08 E-value=6.6e+02 Score=24.26 Aligned_cols=121 Identities=15% Similarity=0.229 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhhhcc----cccccchhHHhhhhhhhhhchhHHHHHHHHHHhhhhcceecccccccHHHHHHHHHH
Q 045225 203 IAAVVLAAHALTALLIGPM----ILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHD 278 (353)
Q Consensus 203 i~~vV~Aah~v~~l~a~P~----~~~~~~~~~~kk~~~~~~~~~~~~~~l~~Qld~aakGtyil~~DldTIs~LV~RL~d 278 (353)
|.|++.++|+=+|.-|+.+ +...-.+...+++.. .+.+.+.+-..-..+=-.=...|++-|+. +=...
T Consensus 39 isSIiPTT~~eIA~raaeGADlvlIATDaD~~GReLA~------kf~eeLrg~VGhiERmK~PiGHDvEhiD~--elvrk 110 (290)
T COG4026 39 ISSIIPTTNVEIAKRAAEGADLVLIATDADRVGRELAE------KFFEELRGMVGHIERMKIPIGHDVEHIDV--ELVRK 110 (290)
T ss_pred EEeeccCchHHHHHHhhccCCEEEEeecCcchhHHHHH------HHHHHHHHhhhhhheeccCCCCCccccCH--HHHHH
Confidence 3455555555444433322 123444444455543 33444443333333222333466666653 22333
Q ss_pred HHhhhHHHHHHHHhh----------hhhhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045225 279 EVEHNKVMIQFCLDR----------REDKF-ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINR 333 (353)
Q Consensus 279 eIe~~~~~v~fave~----------~e~~~-vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInr 333 (353)
++++ ++|+-++.. +++-. +++-++|+.+..+.+.+.+++||-.+..----+.+
T Consensus 111 El~n--AlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~ 174 (290)
T COG4026 111 ELKN--ALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR 174 (290)
T ss_pred HHHH--HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 444544443 12222 66667777777788888888888776655444443
No 53
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=23.35 E-value=5e+02 Score=25.07 Aligned_cols=9 Identities=0% Similarity=0.003 Sum_probs=4.3
Q ss_pred HHHHHHhHH
Q 045225 155 FKVIHDKYS 163 (353)
Q Consensus 155 F~~i~~~~~ 163 (353)
++.+.+.+.
T Consensus 24 ~~~~~~~~~ 32 (306)
T PF04888_consen 24 IERASEAQE 32 (306)
T ss_pred HHHHHHHHH
Confidence 444444444
No 54
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=22.60 E-value=4.6e+02 Score=26.97 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045225 299 ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRAR 335 (353)
Q Consensus 299 vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInraR 335 (353)
..++++.|++....+.+.+++-=+|+..|...+|+-|
T Consensus 372 ~~~~~~~L~~~~~~l~~a~~~~L~~~~~~l~~~n~~r 408 (459)
T PF10337_consen 372 LDEIMERLHEPFSDLLEACDEGLEHAIEWLELVNRFR 408 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 7788999999999999999999999999999999987
No 55
>PRK11020 hypothetical protein; Provisional
Probab=21.80 E-value=3.8e+02 Score=23.02 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 045225 270 GRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEE 322 (353)
Q Consensus 270 s~LV~RL~deIe~~~~~v~fave~~e~~~vk~vv~elkk~~~~f~~qleeLee 322 (353)
..-+.+|+|.++-.+.--+-+..+|+. +++.++.+..+.+..+|+-|-.
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~----~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDA----EKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777766666666554 5666676666777777766643
No 56
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=21.47 E-value=3.2e+02 Score=19.67 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045225 271 RLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTI 331 (353)
Q Consensus 271 ~LV~RL~deIe~~~~~v~fave~~e~~~vk~vv~elkk~~~~f~~qleeLeehv~lCf~tI 331 (353)
++-.-|||.|-+.+..+.+-++. ....+.+..+...+.++++.+.+..+...+
T Consensus 4 rIAreLHD~v~q~L~~i~~~l~~--------~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 56 (68)
T PF07730_consen 4 RIARELHDGVGQSLTAIKMQLEA--------LRRRLADDPEEAREELEEIRELLREALQEL 56 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHTTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH--------HHhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688999999988887766544 222333444567777777777777664333
No 57
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=21.23 E-value=5.6e+02 Score=26.54 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045225 270 GRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVT 344 (353)
Q Consensus 270 s~LV~RL~deIe~~~~~v~fave~~e~~~vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInraR~lVL~~I~~ 344 (353)
-.-+..|+|.+|..+.-|+-+-+. -...+.+|-+-...+|+.++ ||..=+-+-.+-|.+.+++|.-
T Consensus 176 peq~kKlqdrveK~k~evqktkek-----Yektl~el~~yt~~YmE~Me----qvFe~CQ~fE~~Rl~Ffkeil~ 241 (472)
T KOG2856|consen 176 PEQLKKLQDRVEKCKQEVQKTKEK-----YEKTLAELNKYTPVYMEDME----QVFEQCQQFEEKRLQFFKEILL 241 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhccCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999988888766333 55678899999999988774 6777777888899988888843
No 58
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=21.20 E-value=4.2e+02 Score=20.90 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHHHHhhhHHHHHHH---HhhhhhhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 045225 267 DTMGRLVARLHDEVEHNKVMIQFC---LDRREDKF-ALHVMKEIKKNHVGFQKQVEELEEHVYLC 327 (353)
Q Consensus 267 dTIs~LV~RL~deIe~~~~~v~fa---ve~~e~~~-vk~vv~elkk~~~~f~~qleeLeehv~lC 327 (353)
++.+.++..|.||+.||+.--.-- ... -++. -...=+.|......+.+.||-=++|||.-
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~-~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQ-MDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999987532211 111 0111 22233455556666677777777777753
No 59
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=21.06 E-value=3.9e+02 Score=20.47 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=38.2
Q ss_pred cccccHHHHHHHHHHHHhhhHHHHHHHHhh-hhhhH-HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 045225 264 RDFDTMGRLVARLHDEVEHNKVMIQFCLDR-REDKF-ALHVMKEIKKNHVGFQKQVEELEEHVY 325 (353)
Q Consensus 264 ~DldTIs~LV~RL~deIe~~~~~v~fave~-~e~~~-vk~vv~elkk~~~~f~~qleeLeehv~ 325 (353)
..++.|..+..+|..+|+....-.+--|-+ ..+-. .-..|..++.....+...|.+|...+.
T Consensus 19 ~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 19 SSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777788888887766555544443 22211 445566677777777777777666543
No 60
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=21.05 E-value=1e+02 Score=28.32 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=20.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Q 045225 303 MKEIKKNHVGFQKQVEELEEHVYLC 327 (353)
Q Consensus 303 v~elkk~~~~f~~qleeLeehv~lC 327 (353)
++.-|+....|+++++|||.|+-.+
T Consensus 107 lq~mr~~ln~FR~qm~dlE~~l~~Q 131 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLELHLMRQ 131 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666788899999999999987544
No 61
>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]
Probab=20.91 E-value=1e+02 Score=23.17 Aligned_cols=15 Identities=47% Similarity=0.618 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 045225 199 SLIAIAAVVLAAHAL 213 (353)
Q Consensus 199 ~~v~i~~vV~Aah~v 213 (353)
++++++.||++||..
T Consensus 40 ~~~av~~lvi~A~~f 54 (57)
T COG4023 40 AGIAVAILVIAAHIF 54 (57)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344666788888864
No 62
>PF07243 Phlebovirus_G1: Phlebovirus glycoprotein G1; InterPro: IPR010826 This domain is found in several Phlebovirus glycoprotein G1 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].; GO: 0016021 integral to membrane, 0019012 virion
Probab=20.64 E-value=2.2e+02 Score=30.39 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=22.3
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc---cccchhHHhhhhh
Q 045225 187 HKASGICITAVCSLIAIAAVVLAAHALTALLIGPMIL---SFPTKCFKKKLFN 236 (353)
Q Consensus 187 ~~vs~~~fvaa~~~v~i~~vV~Aah~v~~l~a~P~~~---~~~~~~~~kk~~~ 236 (353)
+..|+++.+..+++++...+.+-..++-.+-.+|..+ .+|+..|-||+-.
T Consensus 418 TaLSAlvVStliss~iylil~IL~K~L~~~kliPkkL~sPf~Wl~LLikWi~k 470 (526)
T PF07243_consen 418 TALSALVVSTLISSLIYLILSILSKVLYFFKLIPKKLRSPFMWLSLLIKWIIK 470 (526)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHH
Confidence 4445444444444444333333333333333333321 3577767666543
No 63
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=20.48 E-value=4.3e+02 Score=25.62 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhhHhhhhhchhhHHHHHHHH
Q 045225 170 KSKRKKVARKIKLINYVHKASGICITAVCSLIA 202 (353)
Q Consensus 170 ~~~k~K~~~Klr~~r~~~~vs~~~fvaa~~~v~ 202 (353)
...-.-+++-++..|..|+-.-.||++.++++.
T Consensus 230 ~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~ 262 (280)
T COG5074 230 EQGVGHTDKAVKSARAARKKKIRCYGICFIIII 262 (280)
T ss_pred HHhhhhHHHHHHHHHHHHhcceehhhhHHHHHH
Confidence 333344556677777777666667766665444
No 64
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=20.44 E-value=3.7e+02 Score=21.84 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhh
Q 045225 267 DTMGRLVARLHDEVEHNKVMIQFCLDR 293 (353)
Q Consensus 267 dTIs~LV~RL~deIe~~~~~v~fave~ 293 (353)
.....=+.=|.+.|||.=.+.+||+|+
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN 53 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMEN 53 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 344444566778888888999999998
No 65
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=20.12 E-value=4e+02 Score=20.28 Aligned_cols=7 Identities=14% Similarity=0.420 Sum_probs=2.6
Q ss_pred hhhHHHH
Q 045225 192 ICITAVC 198 (353)
Q Consensus 192 ~~fvaa~ 198 (353)
++.+.++
T Consensus 34 ~~v~~v~ 40 (60)
T PF06072_consen 34 LAVAIVF 40 (60)
T ss_pred HHHHHHH
Confidence 3333333
No 66
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=20.04 E-value=6.4e+02 Score=28.91 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=34.9
Q ss_pred ecccccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 045225 261 ILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEH 323 (353)
Q Consensus 261 il~~DldTIs~LV~RL~deIe~~~~~v~fave~~e~~~vk~vv~elkk~~~~f~~qleeLeeh 323 (353)
+...++|++++.-.-|.|.+|....-..-+...-++ ...++++++.....+..+++.|...
T Consensus 456 ~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~--~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 456 SAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTES--QAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666788888888888887765544443222221 3445555555555555555555544
Done!