Query 045225
Match_columns 353
No_of_seqs 101 out of 108
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 19:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twe_A Alpha4H; unknown functi 63.1 5.3 0.00018 24.0 2.4 16 166-181 10-25 (27)
2 2r25_A Phosphorelay intermedia 38.2 1E+02 0.0035 26.7 7.6 67 75-145 25-93 (167)
3 1lq7_A Alpha3W; three helix bu 32.0 50 0.0017 23.6 3.7 19 303-321 27-45 (67)
4 3t98_B Nucleoporin NUP58/NUP45 31.1 53 0.0018 25.8 4.2 32 298-329 9-40 (93)
5 4adz_A CSOR; transcription, co 31.0 2.3E+02 0.0079 23.8 8.3 11 320-330 100-110 (136)
6 1deq_A Fibrinogen (alpha chain 30.8 2.5E+02 0.0085 27.5 9.6 66 256-330 97-163 (390)
7 4adz_A CSOR; transcription, co 28.0 1.7E+02 0.0059 24.5 7.0 53 243-295 56-116 (136)
8 3swk_A Vimentin; cytoskeleton, 27.1 2E+02 0.007 21.9 6.9 73 248-325 5-80 (86)
9 3mq9_A Bone marrow stromal ant 26.6 1.6E+02 0.0055 28.5 7.8 35 299-333 395-429 (471)
10 2f93_B Sensory rhodopsin II tr 26.0 69 0.0024 26.5 4.2 28 242-271 86-113 (122)
11 3mtu_E Head morphogenesis prot 25.9 67 0.0023 24.5 3.7 27 299-325 28-54 (77)
12 3ol1_A Vimentin; structural ge 24.9 2.7E+02 0.0092 22.3 8.3 80 244-326 21-101 (119)
13 2j69_A Bacterial dynamin-like 24.4 3.1E+02 0.01 28.4 9.8 53 271-323 630-684 (695)
14 3ck6_A Putative membrane trans 23.6 2.4E+02 0.0083 24.7 7.8 29 149-177 206-234 (252)
15 3aai_A Copper homeostasis oper 21.6 2.9E+02 0.0098 21.4 7.8 25 306-332 51-75 (94)
16 4dnd_A Syntaxin-10, SYN10; str 21.6 1.5E+02 0.0052 24.4 5.5 28 299-326 65-92 (130)
17 3ghg_A Fibrinogen alpha chain; 21.3 2.1E+02 0.0073 29.3 7.4 13 242-254 63-75 (562)
18 2iub_A CORA, divalent cation t 21.1 5.1E+02 0.018 24.2 12.1 36 144-179 251-287 (363)
19 3vkg_A Dynein heavy chain, cyt 20.0 1.4E+03 0.047 28.7 20.4 36 303-338 2044-2079(3245)
No 1
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=63.13 E-value=5.3 Score=23.97 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 045225 166 LHNLKSKRKKVARKIK 181 (353)
Q Consensus 166 L~~L~~~k~K~~~Klr 181 (353)
|+.|+.+.+|+++|+|
T Consensus 10 ledlqerlrklrkklr 25 (27)
T 3twe_A 10 LEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3445555677777766
No 2
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=38.24 E-value=1e+02 Score=26.73 Aligned_cols=67 Identities=7% Similarity=0.152 Sum_probs=40.7
Q ss_pred chH-HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHhHHHHHHHhhccCCCCC-CchhHHHHHHHHHhhHhhcC
Q 045225 75 PEL-KDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTE-PHDKVKLIVSNLNSLIILTN 145 (353)
Q Consensus 75 ~~l-~~Lv~~YFd~S~~a~d~C~~L~~~I~~aR~~y~~i~~aL~~~~~~~~~-~~~~~~~~~~eL~~F~~~~n 145 (353)
|+. ..+|..||+.+.+.. ..|.+.+. ....+.-+..+.|.+...+.. |-.+-...-.++..+...+|
T Consensus 25 p~Fv~elV~~F~edse~~l---~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~~~C~~le~~~r~~n 93 (167)
T 2r25_A 25 SDFSKGLIIQFIDQAQTTF---AQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKME 93 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHH---HHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHhHHHHH---HHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 543 689999999988653 33444443 123367778888888654322 32333444556666766677
No 3
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=31.98 E-value=50 Score=23.58 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=12.5
Q ss_pred HHHHHHhhhhHHHHHHHHH
Q 045225 303 MKEIKKNHVGFQKQVEELE 321 (353)
Q Consensus 303 v~elkk~~~~f~~qleeLe 321 (353)
++||+|+.+.+.+.++||+
T Consensus 27 ieelkkkweelkkkieelg 45 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELG 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 5666777777776666653
No 4
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=31.10 E-value=53 Score=25.81 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 045225 298 FALHVMKEIKKNHVGFQKQVEELEEHVYLCLV 329 (353)
Q Consensus 298 ~vk~vv~elkk~~~~f~~qleeLeehv~lCf~ 329 (353)
+....+.++++....+..+||++|.|+.-++.
T Consensus 9 yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 9 YFRVLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35677899999999999999999999988653
No 5
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=31.05 E-value=2.3e+02 Score=23.76 Aligned_cols=11 Identities=45% Similarity=0.869 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 045225 320 LEEHVYLCLVT 330 (353)
Q Consensus 320 Leehv~lCf~t 330 (353)
|++|+.-|...
T Consensus 100 Le~Hl~~CV~~ 110 (136)
T 4adz_A 100 LEEHLRHCVAD 110 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55666666544
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.81 E-value=2.5e+02 Score=27.54 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=44.2
Q ss_pred hhcceecccccccH-HHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 045225 256 AKGTYILNRDFDTM-GRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVT 330 (353)
Q Consensus 256 akGtyil~~DldTI-s~LV~RL~deIe~~~~~v~fave~~e~~~vk~vv~elkk~~~~f~~qleeLeehv~lCf~t 330 (353)
=|++....+|.|++ ...-.-|+..|+.++..|+-= +. -|+.|+.+.+.....|.-||.-|+.|.+.
T Consensus 97 lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q--------~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~ 163 (390)
T 1deq_A 97 MRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ--------VQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRS 163 (390)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH--------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666676654 333344555555555555422 33 57888888888899999999999988764
No 7
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=28.02 E-value=1.7e+02 Score=24.54 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhh----hhccee--cccccccHHHHHHHHHHHH--hhhHHHHHHHHhhhh
Q 045225 243 GFLRKVRKQLDVA----AKGTYI--LNRDFDTMGRLVARLHDEV--EHNKVMIQFCLDRRE 295 (353)
Q Consensus 243 ~~~~~l~~Qld~a----akGtyi--l~~DldTIs~LV~RL~deI--e~~~~~v~fave~~e 295 (353)
+.++++.+|++.. ..|.|- +..-+--++.-++++...| +|+...+.-+++.|+
T Consensus 56 ~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ILe~Hl~~CV~~ai~~g~ 116 (136)
T 4adz_A 56 KRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQLLEEHLRHCVADAALKGG 116 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5577888999953 556663 2244555666666766665 566666666666544
No 8
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.05 E-value=2e+02 Score=21.86 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=40.0
Q ss_pred HHHHHHhh--hhcceecccccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhH-HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 045225 248 VRKQLDVA--AKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKF-ALHVMKEIKKNHVGFQKQVEELEEHV 324 (353)
Q Consensus 248 l~~Qld~a--akGtyil~~DldTIs~LV~RL~deIe~~~~~v~fave~~e~~~-vk~vv~elkk~~~~f~~qleeLeehv 324 (353)
++.|++.+ .+|... -++|++.-.|..+...-|.-..+.. .+++ +-. ++.++++.--.-..+..+++-|-+.+
T Consensus 5 Lr~qi~~l~~e~~~l~--~e~dn~~~~~edfk~KyE~E~~~R~-~~E~--d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 5 LRRQVDQLTNDKARVE--VERDNLAEDIMRLREKLQEEMLQRE-EAEN--TLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677754 343332 3556666666655555544333322 2222 211 66667777666677777777776665
Q ss_pred H
Q 045225 325 Y 325 (353)
Q Consensus 325 ~ 325 (353)
.
T Consensus 80 ~ 80 (86)
T 3swk_A 80 A 80 (86)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.58 E-value=1.6e+02 Score=28.49 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045225 299 ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINR 333 (353)
Q Consensus 299 vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInr 333 (353)
.+.+...|.+......+.+-++|.++..|.+|+--
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMA 429 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHH
Confidence 55677778888888888888999999999888753
No 10
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=25.97 E-value=69 Score=26.48 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhhcceecccccccHHH
Q 045225 242 SGFLRKVRKQLDVAAKGTYILNRDFDTMGR 271 (353)
Q Consensus 242 ~~~~~~l~~Qld~aakGtyil~~DldTIs~ 271 (353)
...+.++..+.+.++-|. +.-|++|-+|
T Consensus 86 ~~pL~rLs~~A~aIa~Gd--LDVdiet~RR 113 (122)
T 2f93_B 86 AASLSTLAAKASRMGDGD--LDVELETRRE 113 (122)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHcCC--CCCccccccc
Confidence 355677888888888887 4446666543
No 11
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=25.85 E-value=67 Score=24.50 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 045225 299 ALHVMKEIKKNHVGFQKQVEELEEHVY 325 (353)
Q Consensus 299 vk~vv~elkk~~~~f~~qleeLeehv~ 325 (353)
--+.+.+||-+-.+|.+.|++||+-++
T Consensus 28 ~~~~~~~~~~~~~~~EKTIDDLEDkL~ 54 (77)
T 3mtu_E 28 RTEALQQLRVNYGSFVSEYNDLEEKVA 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999998763
No 12
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.94 E-value=2.7e+02 Score=22.34 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhhcceecccccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhH-HHHHHHHHHHhhhhHHHHHHHHHH
Q 045225 244 FLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKF-ALHVMKEIKKNHVGFQKQVEELEE 322 (353)
Q Consensus 244 ~~~~l~~Qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fave~~e~~~-vk~vv~elkk~~~~f~~qleeLee 322 (353)
+.+.+..|+|.+.+..--+.-++|++...++.+...-|.-..+- -.+++ +-. ++.++++.--....+..+++-|.+
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r-~~~E~--di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR-EEAEN--TLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHH--HHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 34557888886643332333467777777766665555433322 12222 111 555666655555666666666666
Q ss_pred HHHH
Q 045225 323 HVYL 326 (353)
Q Consensus 323 hv~l 326 (353)
-+..
T Consensus 98 El~F 101 (119)
T 3ol1_A 98 EIAF 101 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 13
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=24.37 E-value=3.1e+02 Score=28.45 Aligned_cols=53 Identities=11% Similarity=0.227 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhH--HHHHHHHHHHhhhhHHHHHHHHHHH
Q 045225 271 RLVARLHDEVEHNKVMIQFCLDRREDKF--ALHVMKEIKKNHVGFQKQVEELEEH 323 (353)
Q Consensus 271 ~LV~RL~deIe~~~~~v~fave~~e~~~--vk~vv~elkk~~~~f~~qleeLeeh 323 (353)
.+-.||.+.|++.+...+-+++..+... +..-.+++.+=..+-.++|+.+++-
T Consensus 630 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 684 (695)
T 2j69_A 630 EVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAA 684 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4456777777777777777777644322 5556666666555555666655553
No 14
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=23.63 E-value=2.4e+02 Score=24.68 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=23.7
Q ss_pred CcchhhHHHHHHhHHHHHHHHHHHHHHHH
Q 045225 149 NPSTNEFKVIHDKYSSVLHNLKSKRKKVA 177 (353)
Q Consensus 149 ~~~~~~F~~i~~~~~~LL~~L~~~k~K~~ 177 (353)
.+....|+++++....+.+.+++-+..+.
T Consensus 206 ~~~~~~~rdv~d~~~~~~e~i~~~re~~~ 234 (252)
T 3ck6_A 206 TSRPHQYRFAHNNITRINETIEFYLGEVA 234 (252)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556699999999999999988887765
No 15
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=21.57 E-value=2.9e+02 Score=21.42 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=11.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 045225 306 IKKNHVGFQKQVEELEEHVYLCLVTIN 332 (353)
Q Consensus 306 lkk~~~~f~~qleeLeehv~lCf~tIn 332 (353)
.++-..+++.. =|++|+.-|...-.
T Consensus 51 vr~Al~~~~~~--il~~Hl~~Cv~~~~ 75 (94)
T 3aai_A 51 VEGALDRVGEM--VLRAHLKDHVATAH 75 (94)
T ss_dssp HHHHHHHHHHH--HHHHHHHHC-----
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhHh
Confidence 33433444433 37788888876643
No 16
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.55 E-value=1.5e+02 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 045225 299 ALHVMKEIKKNHVGFQKQVEELEEHVYL 326 (353)
Q Consensus 299 vk~vv~elkk~~~~f~~qleeLeehv~l 326 (353)
+...-+||+........+|+||++-|.-
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666665553
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.28 E-value=2.1e+02 Score=29.26 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHh
Q 045225 242 SGFLRKVRKQLDV 254 (353)
Q Consensus 242 ~~~~~~l~~Qld~ 254 (353)
++..++|+.|++-
T Consensus 63 tkrINELKnqLEd 75 (562)
T 3ghg_A 63 TNRINKLKNSLFE 75 (562)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHH
Confidence 3445556666664
No 18
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=21.08 E-value=5.1e+02 Score=24.20 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=26.1
Q ss_pred cCCCCC-cchhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045225 144 TNPFSN-PSTNEFKVIHDKYSSVLHNLKSKRKKVARK 179 (353)
Q Consensus 144 ~nPF~~-~~~~~F~~i~~~~~~LL~~L~~~k~K~~~K 179 (353)
.+|+-. +....|+++++....+.+.++.-+..+..-
T Consensus 251 ~~~~~~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l 287 (363)
T 2iub_A 251 VPPLIEKETVPYFRDVYDHTIQIADTVETFRDIVSGL 287 (363)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433 344569999999999999998888777643
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.05 E-value=1.4e+03 Score=28.73 Aligned_cols=36 Identities=8% Similarity=0.171 Sum_probs=18.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045225 303 MKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQV 338 (353)
Q Consensus 303 v~elkk~~~~f~~qleeLeehv~lCf~tInraR~lV 338 (353)
+.+++.+-+.-+..-+.|++.+..|-..++||-.++
T Consensus 2044 l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2044 IATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445556666666666666665543
Done!