Query 045225
Match_columns 353
No_of_seqs 101 out of 108
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 19:31:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045225.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045225hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ylfa1 a.4.5.55 (A:5-142) Hyp 24.0 1.1E+02 0.0079 22.7 7.2 57 209-270 9-72 (138)
2 d1vcta1 a.7.12.1 (A:9-107) Hyp 19.4 1.4E+02 0.01 20.7 7.7 49 268-331 5-53 (99)
3 d1lgha_ f.3.1.1 (A:) Light-har 19.3 31 0.0023 22.2 2.3 7 215-221 36-42 (56)
4 d1sumb_ a.7.12.1 (B:) PhoU hom 18.5 2.1E+02 0.015 22.5 9.0 32 300-331 27-58 (225)
5 d2htna1 a.25.1.1 (A:1-158) Bac 17.1 1.7E+02 0.012 21.6 7.0 47 275-321 93-142 (158)
6 d2nsza1 a.118.1.14 (A:322-450) 16.8 72 0.0052 24.0 4.5 45 75-121 8-53 (129)
7 d1lvfa_ a.47.2.1 (A:) Syntaxin 15.9 84 0.0061 22.8 4.5 28 299-326 40-67 (106)
8 d1xd7a_ a.4.5.55 (A:) Hypothet 15.9 1.9E+02 0.014 20.8 7.2 46 240-288 30-83 (127)
9 d1jgca_ a.25.1.1 (A:) Bacterio 15.0 2.2E+02 0.016 21.2 7.2 46 272-317 90-138 (160)
10 d1sumb_ a.7.12.1 (B:) PhoU hom 12.6 2.7E+02 0.02 21.8 7.5 12 314-325 86-97 (225)
No 1
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=23.99 E-value=1.1e+02 Score=22.69 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhcccccccchhHHhhhhhhhhhchhHHHHHHHHHHhh-------hhcceecccccccHH
Q 045225 209 AAHALTALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVA-------AKGTYILNRDFDTMG 270 (353)
Q Consensus 209 Aah~v~~l~a~P~~~~~~~~~~~kk~~~~~~~~~~~~~~l~~Qld~a-------akGtyil~~DldTIs 270 (353)
|.|+++-++.-|.. ++.+ +.+.+.......++.|+-.+|-.+ .+|-|.+.+|.++|+
T Consensus 9 Av~~L~~la~~~~~---~vss--~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG~GG~~L~~~p~~It 72 (138)
T d1ylfa1 9 AVHILSILKNNPSS---LCTS--DYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHEIT 72 (138)
T ss_dssp HHHHHHHHHHSCGG---GCCH--HHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSCGGGCB
T ss_pred HHHHHHHHHhCCCC---cCcH--HHHHHHHCcCHHHHHHHHHHHHHCCCeEeecCCCCceecCCHhhcC
Confidence 34555555544432 2222 233333344567788888888743 569999999999987
No 2
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=19.36 E-value=1.4e+02 Score=20.70 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045225 268 TMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTI 331 (353)
Q Consensus 268 TIs~LV~RL~deIe~~~~~v~fave~~e~~~vk~vv~elkk~~~~f~~qleeLeehv~lCf~tI 331 (353)
+++..+.+..+-+++|...+=-|+ ........+++.+.++.|+.-+..|
T Consensus 5 ~i~~~l~~M~~~~~~ml~~a~~a~---------------~~~D~~~A~~v~~~d~~ID~l~~~i 53 (99)
T d1vcta1 5 SVKEIFIEMKDTVELMVDLAYASL---------------LFGDKEIAEEVLELEERIDLLNYQL 53 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---------------HHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---------------HHCCHHHHHHHHHhhHHHHHHHHHH
Confidence 344455555555555555444444 4444444444445555554444443
No 3
>d1lgha_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=19.31 E-value=31 Score=22.22 Aligned_cols=7 Identities=43% Similarity=0.572 Sum_probs=4.1
Q ss_pred HHhhhcc
Q 045225 215 ALLIGPM 221 (353)
Q Consensus 215 ~l~a~P~ 221 (353)
+++++|+
T Consensus 36 avlaapg 42 (56)
T d1lgha_ 36 AVLAAPG 42 (56)
T ss_dssp HHHHSGG
T ss_pred HHHhcCC
Confidence 4556675
No 4
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=18.46 E-value=2.1e+02 Score=22.49 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045225 300 LHVMKEIKKNHVGFQKQVEELEEHVYLCLVTI 331 (353)
Q Consensus 300 k~vv~elkk~~~~f~~qleeLeehv~lCf~tI 331 (353)
..+++-|........+++.+.++.|+.+-..|
T Consensus 27 ~~a~~al~~~D~~~a~~V~~~d~~Id~l~~~I 58 (225)
T d1sumb_ 27 RNSISSLVERNESLAREVIADEEVVDQMEVEI 58 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444445555555555444444
No 5
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=17.10 E-value=1.7e+02 Score=21.63 Aligned_cols=47 Identities=4% Similarity=0.109 Sum_probs=28.5
Q ss_pred HHHHHHhhhHHHHHHHHhhhhhh---HHHHHHHHHHHhhhhHHHHHHHHH
Q 045225 275 RLHDEVEHNKVMIQFCLDRREDK---FALHVMKEIKKNHVGFQKQVEELE 321 (353)
Q Consensus 275 RL~deIe~~~~~v~fave~~e~~---~vk~vv~elkk~~~~f~~qleeLe 321 (353)
.-...++.....++.|.+.++.. ++..++++-.++...|.+.|+.++
T Consensus 93 ~e~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~eee~h~~~l~~~L~~~~ 142 (158)
T d2htna1 93 LELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQ 142 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777776654432 266677777777777766666553
No 6
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.84 E-value=72 Score=23.99 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHhHHHHHHHh-hccC
Q 045225 75 PELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALD-TADD 121 (353)
Q Consensus 75 ~~l~~Lv~~YFd~S~~a~d~C~~L~~~I~~aR~~y~~i~~aL~-~~~~ 121 (353)
.++..++.+||++. ..-+++..+.. ++.-..++..++.++. .++.
T Consensus 8 kk~~~ll~EY~~~~-D~~Ea~~~l~e-L~~p~~~~e~V~~~i~~ale~ 53 (129)
T d2nsza1 8 KEIDMLLKEYLLSG-DISEAEHCLKE-LEVPHFHHELVYEAIVMVLES 53 (129)
T ss_dssp HHHHHHHHHHHHHC-CHHHHHHHHHH-HTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHH-cCCchhhHHHHHHHHHHHHhc
Confidence 35789999999754 44444444332 2211223456666664 3444
No 7
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.86 E-value=84 Score=22.84 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 045225 299 ALHVMKEIKKNHVGFQKQVEELEEHVYL 326 (353)
Q Consensus 299 vk~vv~elkk~~~~f~~qleeLeehv~l 326 (353)
+...-+||+....+...+|+||++-|..
T Consensus 40 ~~~~~~eL~~~l~siewdL~dLe~av~~ 67 (106)
T d1lvfa_ 40 IDWTTNELRNNLRSIEWDLEDLDETISI 67 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4445566666666666666666665553
No 8
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=15.86 E-value=1.9e+02 Score=20.85 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=26.5
Q ss_pred hchhHHHHHHHHHHhh--------hhcceecccccccHHHHHHHHHHHHhhhHHHHH
Q 045225 240 LRSGFLRKVRKQLDVA--------AKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQ 288 (353)
Q Consensus 240 ~~~~~~~~l~~Qld~a--------akGtyil~~DldTIs~LV~RL~deIe~~~~~v~ 288 (353)
.+..++.|+-.+|..+ ..|-| +.+|.+.|+ +.-+...+|......+
T Consensus 30 ~~~~~v~kIl~~L~~aglV~s~rG~~GGy-Lar~p~~It--l~dI~~ave~~~~~~~ 83 (127)
T d1xd7a_ 30 TNPVVVRRMISLLKKADILTSRAGVPGAS-LKKDPADIS--LLEVYRAVQKQEELFA 83 (127)
T ss_dssp SCHHHHHHHHHHHHHTTSEECCSSSSSCE-ESSCGGGCB--HHHHHHHHCC------
T ss_pred cCHHHHHHHHHHHHHhCcccccCCCCCcc-ccCCHHhCc--HHHHHHHHcCCcceee
Confidence 3445666777777743 46668 889999988 4455555555444444
No 9
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=15.01 E-value=2.2e+02 Score=21.20 Aligned_cols=46 Identities=11% Similarity=0.137 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhh---HHHHHHHHHHHhhhhHHHHH
Q 045225 272 LVARLHDEVEHNKVMIQFCLDRREDK---FALHVMKEIKKNHVGFQKQV 317 (353)
Q Consensus 272 LV~RL~deIe~~~~~v~fave~~e~~---~vk~vv~elkk~~~~f~~ql 317 (353)
.+..-+..++..+.+++.|-+.++.. ++..++++-.++...|.++|
T Consensus 90 ~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~eee~h~~~l~~~l 138 (160)
T d1jgca_ 90 DLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQI 138 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777888876665433 26666777666666664433
No 10
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=12.56 E-value=2.7e+02 Score=21.76 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 045225 314 QKQVEELEEHVY 325 (353)
Q Consensus 314 ~~qleeLeehv~ 325 (353)
...||..|+|+.
T Consensus 86 ~~dlERIgD~a~ 97 (225)
T d1sumb_ 86 AELIENIADKCH 97 (225)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
Done!