BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045226
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 11 QEGVRAKLKKWEETLKTIEAVLIDAEE--KQLSDRAVKLWLDDLRDLAYDAEDILDEFAA 68
+GV+ ++ + L++ A LI E ++ D KLW D++R+L+Y ED++D+F
Sbjct: 21 HKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80
Query: 69 EA 70
+
Sbjct: 81 QV 82
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 184 IALVGMGGIGKTTLAQEVYNDKRVEDFKP 212
+ +VG GG+GK+ L + D+ VED++P
Sbjct: 9 VIMVGSGGVGKSALTLQFMYDEFVEDYEP 37
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 184 IALVGMGGIGKTTLAQEVYNDKRVEDFKP 212
+ +VG GG+GK+ L + D+ VED++P
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEP 35
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 184 IALVGMGGIGKTTLAQEVYNDKRVEDFKP 212
+ +VG GG+GK+ L + D+ VED++P
Sbjct: 17 VIMVGSGGVGKSALTLQFMYDEFVEDYEP 45
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 184 IALVGMGGIGKTTLAQEVYNDKRVEDFKP 212
+ +VG GG+GK+ L + D+ VED++P
Sbjct: 6 VIMVGSGGVGKSALTLQFMYDEFVEDYEP 34
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 184 IALVGMGGIGKTTLAQEVYNDKRVEDFKP 212
+ +VG GG+GK+ L + D+ VED++P
Sbjct: 21 VIMVGSGGVGKSALTLQFMYDEFVEDYEP 49
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 184 IALVGMGGIGKTTLAQEVYNDKRVEDFKP 212
+ +VG GG+GK+ L + D+ VED++P
Sbjct: 9 VIMVGSGGVGKSALTLQFMYDEFVEDYEP 37
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 184 IALVGMGGIGKTTLAQEVYNDKRVEDFKP 212
+ +VG GG+GK+ L + D+ VED++P
Sbjct: 10 VIMVGSGGVGKSALTLQFMYDEFVEDYEP 38
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 16/65 (24%)
Query: 156 VYGRDTEKARVLDMV---LKNDPCDAANFRVIALVGMGGIGKTT----LAQEVYNDKRVE 208
V GR E RV++++ KN+P L+G G+GKT LAQ++ N++ E
Sbjct: 182 VIGRSKEIQRVIEVLSRRTKNNPV---------LIGEPGVGKTAIAEGLAQQIINNEVPE 232
Query: 209 DFKPK 213
+ K
Sbjct: 233 ILRDK 237
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 16/65 (24%)
Query: 156 VYGRDTEKARVLDMV---LKNDPCDAANFRVIALVGMGGIGKTT----LAQEVYNDKRVE 208
V GR E RV++++ KN+P L+G G+GKT LAQ++ N++ E
Sbjct: 182 VIGRSKEIQRVIEVLSRRTKNNPV---------LIGEPGVGKTAIAEGLAQQIINNEVPE 232
Query: 209 DFKPK 213
+ K
Sbjct: 233 ILRDK 237
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 161 TEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEV-------YNDKRVEDFKPK 213
E+++++D L+ D +A I L+G G GK+T +++ ++ + E+F+P
Sbjct: 13 VERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPT 72
Query: 214 AWVCVSDDFDVL 225
+ V VL
Sbjct: 73 IYSNVIKGMRVL 84
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFK 211
N + ++G G+GKT+L NDK + +K
Sbjct: 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYK 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,750,603
Number of Sequences: 62578
Number of extensions: 240544
Number of successful extensions: 1277
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 24
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)