Query 045226
Match_columns 266
No_of_seqs 198 out of 1624
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 11:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.3E-30 1.4E-34 242.6 23.9 249 4-266 16-268 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.8 6E-19 1.3E-23 150.0 11.6 104 159-266 1-108 (287)
3 PLN03210 Resistant to P. syrin 99.4 8.5E-13 1.9E-17 131.3 11.6 106 151-266 181-303 (1153)
4 PRK00411 cdc6 cell division co 99.0 3.8E-09 8.2E-14 93.9 11.8 113 152-266 28-145 (394)
5 TIGR02928 orc1/cdc6 family rep 99.0 5.4E-09 1.2E-13 92.0 11.5 113 152-266 13-136 (365)
6 cd01128 rho_factor Transcripti 98.9 2E-09 4.3E-14 89.2 5.9 86 181-266 16-110 (249)
7 PRK09376 rho transcription ter 98.8 1.1E-08 2.3E-13 88.9 7.0 97 165-266 158-263 (416)
8 PTZ00202 tuzin; Provisional 98.8 2.6E-07 5.6E-12 81.2 14.1 106 148-265 256-367 (550)
9 PF13401 AAA_22: AAA domain; P 98.7 2.8E-08 6E-13 74.2 5.1 86 181-266 4-94 (131)
10 TIGR00767 rho transcription te 98.6 1.6E-07 3.4E-12 82.1 9.1 86 181-266 168-262 (415)
11 TIGR03015 pepcterm_ATPase puta 98.5 1.4E-06 3E-11 73.3 12.1 83 181-266 43-130 (269)
12 PF13191 AAA_16: AAA ATPase do 98.5 1.7E-07 3.6E-12 74.2 5.7 77 155-236 1-83 (185)
13 COG1474 CDC6 Cdc6-related prot 98.5 1.4E-06 3.1E-11 76.3 11.7 111 154-266 17-130 (366)
14 PF01637 Arch_ATPase: Archaeal 98.4 3.6E-07 7.8E-12 74.8 5.0 60 156-222 1-60 (234)
15 PRK11331 5-methylcytosine-spec 98.4 2.4E-06 5.2E-11 75.9 9.4 68 154-229 175-243 (459)
16 cd00009 AAA The AAA+ (ATPases 98.3 4.3E-06 9.2E-11 62.9 9.2 59 157-223 1-60 (151)
17 PRK08118 topology modulation p 98.2 5.7E-07 1.2E-11 70.3 2.2 50 182-232 2-57 (167)
18 PF05729 NACHT: NACHT domain 98.2 2.8E-06 6E-11 65.7 5.9 79 182-266 1-88 (166)
19 PTZ00112 origin recognition co 98.2 1.2E-05 2.5E-10 76.4 10.8 114 152-266 753-876 (1164)
20 KOG2543 Origin recognition com 98.2 2.3E-05 4.9E-10 67.5 10.8 107 153-266 5-122 (438)
21 TIGR00635 ruvB Holliday juncti 98.1 9.2E-06 2E-10 69.7 7.9 51 154-205 4-54 (305)
22 PRK07261 topology modulation p 98.0 2E-05 4.4E-10 61.7 7.0 53 183-235 2-56 (171)
23 PRK00080 ruvB Holliday junctio 98.0 2.3E-05 5.1E-10 68.0 7.8 51 154-205 25-75 (328)
24 KOG2227 Pre-initiation complex 98.0 8.1E-05 1.7E-09 65.7 10.4 114 151-266 147-263 (529)
25 PF05621 TniB: Bacterial TniB 98.0 0.00014 3E-09 61.4 11.4 109 155-266 35-152 (302)
26 PRK04841 transcriptional regul 98.0 8.7E-05 1.9E-09 73.0 11.9 92 165-266 21-128 (903)
27 PRK13342 recombination factor 97.9 2.6E-05 5.5E-10 69.9 6.9 45 154-204 12-59 (413)
28 PF05496 RuvB_N: Holliday junc 97.9 7.3E-05 1.6E-09 60.4 8.6 106 154-265 24-134 (233)
29 COG2256 MGS1 ATPase related to 97.9 5.4E-05 1.2E-09 65.7 8.2 25 180-204 47-71 (436)
30 KOG2028 ATPase related to the 97.8 7.5E-05 1.6E-09 64.1 7.4 53 181-236 162-214 (554)
31 PRK04195 replication factor C 97.8 0.00011 2.3E-09 67.3 8.6 49 154-204 14-62 (482)
32 smart00382 AAA ATPases associa 97.8 0.00011 2.5E-09 54.4 7.2 38 182-220 3-40 (148)
33 smart00763 AAA_PrkA PrkA AAA d 97.7 3.7E-05 8E-10 66.6 4.4 51 155-205 52-102 (361)
34 PF13207 AAA_17: AAA domain; P 97.6 4.7E-05 1E-09 55.8 3.2 22 183-204 1-22 (121)
35 PF04665 Pox_A32: Poxvirus A32 97.6 8.5E-05 1.8E-09 61.0 4.9 36 181-218 13-49 (241)
36 TIGR02639 ClpA ATP-dependent C 97.6 0.00027 5.9E-09 67.8 9.0 105 154-264 182-315 (731)
37 CHL00095 clpC Clp protease ATP 97.6 0.00024 5.2E-09 69.1 8.5 46 154-205 179-224 (821)
38 PRK12608 transcription termina 97.6 0.00055 1.2E-08 59.7 9.8 100 162-266 119-227 (380)
39 TIGR02903 spore_lon_C ATP-depe 97.6 0.00053 1.2E-08 64.4 10.2 60 154-219 154-217 (615)
40 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00041 8.8E-09 57.1 8.3 86 180-266 18-122 (235)
41 TIGR02237 recomb_radB DNA repa 97.5 0.00028 6.2E-09 57.0 6.8 84 179-266 10-104 (209)
42 TIGR03499 FlhF flagellar biosy 97.5 0.00044 9.6E-09 58.7 7.7 84 180-266 193-279 (282)
43 PRK06696 uridine kinase; Valid 97.5 0.00016 3.6E-09 59.2 5.0 43 159-204 3-45 (223)
44 PF13173 AAA_14: AAA domain 97.5 0.00026 5.6E-09 52.7 5.4 39 182-222 3-41 (128)
45 cd01393 recA_like RecA is a b 97.4 0.0013 2.9E-08 53.7 9.5 85 180-266 18-121 (226)
46 PRK14963 DNA polymerase III su 97.4 6.8E-05 1.5E-09 68.5 2.0 47 154-205 14-60 (504)
47 PRK09361 radB DNA repair and r 97.4 0.00044 9.5E-09 56.6 6.5 84 180-266 22-114 (225)
48 PRK05541 adenylylsulfate kinas 97.4 0.00021 4.5E-09 56.2 4.4 35 180-216 6-41 (176)
49 PRK13341 recombination factor 97.4 0.00028 6E-09 67.2 6.0 46 154-205 28-76 (725)
50 PF00448 SRP54: SRP54-type pro 97.3 0.00016 3.5E-09 57.9 3.1 24 181-204 1-24 (196)
51 cd02025 PanK Pantothenate kina 97.3 0.001 2.2E-08 54.3 7.9 22 183-204 1-22 (220)
52 PRK05564 DNA polymerase III su 97.3 0.0021 4.5E-08 55.5 9.8 78 154-237 4-87 (313)
53 PRK11889 flhF flagellar biosyn 97.3 0.0019 4E-08 56.9 9.2 25 180-204 240-264 (436)
54 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0012 2.6E-08 64.6 8.8 45 154-204 173-217 (852)
55 PLN03025 replication factor C 97.3 0.0017 3.6E-08 56.2 8.8 46 154-205 13-58 (319)
56 TIGR00959 ffh signal recogniti 97.3 0.002 4.3E-08 57.7 9.4 25 180-204 98-122 (428)
57 COG0466 Lon ATP-dependent Lon 97.3 0.00023 4.9E-09 66.1 3.5 51 154-204 323-373 (782)
58 PRK10867 signal recognition pa 97.3 0.0017 3.8E-08 58.1 9.0 24 180-203 99-122 (433)
59 PRK14949 DNA polymerase III su 97.3 0.0017 3.6E-08 62.6 9.2 47 154-205 16-62 (944)
60 COG0572 Udk Uridine kinase [Nu 97.2 0.00061 1.3E-08 54.9 5.3 25 180-204 7-31 (218)
61 TIGR00554 panK_bact pantothena 97.2 0.0023 5E-08 54.4 9.1 25 179-203 60-84 (290)
62 cd01394 radB RadB. The archaea 97.2 0.0011 2.3E-08 54.1 6.9 43 180-223 18-60 (218)
63 PRK07667 uridine kinase; Provi 97.2 0.00051 1.1E-08 55.0 4.8 38 163-204 3-40 (193)
64 PRK09270 nucleoside triphospha 97.2 0.0025 5.4E-08 52.4 9.0 27 179-205 31-57 (229)
65 PRK15455 PrkA family serine pr 97.2 0.00026 5.7E-09 64.8 3.4 50 155-204 77-126 (644)
66 PRK14722 flhF flagellar biosyn 97.2 0.0014 3.1E-08 57.4 7.9 25 181-205 137-161 (374)
67 PF00485 PRK: Phosphoribulokin 97.2 0.00028 6.1E-09 56.5 3.2 78 183-261 1-85 (194)
68 PRK04301 radA DNA repair and r 97.2 0.0017 3.6E-08 56.2 8.1 86 180-266 101-205 (317)
69 PRK05480 uridine/cytidine kina 97.2 0.00033 7.2E-09 56.7 3.6 25 180-204 5-29 (209)
70 PRK14957 DNA polymerase III su 97.2 0.0019 4.1E-08 59.6 8.7 46 154-204 16-61 (546)
71 PRK05703 flhF flagellar biosyn 97.2 0.0019 4.2E-08 57.9 8.6 24 181-204 221-244 (424)
72 TIGR00235 udk uridine kinase. 97.2 0.00037 8E-09 56.4 3.5 25 180-204 5-29 (207)
73 PRK12727 flagellar biosynthesi 97.2 0.0026 5.7E-08 58.0 9.1 25 180-204 349-373 (559)
74 cd03115 SRP The signal recogni 97.2 0.0013 2.8E-08 51.5 6.4 22 183-204 2-23 (173)
75 PTZ00301 uridine kinase; Provi 97.1 0.00058 1.3E-08 55.3 4.3 25 180-204 2-26 (210)
76 PRK14960 DNA polymerase III su 97.1 0.0029 6.3E-08 59.2 9.2 46 154-204 15-60 (702)
77 TIGR02012 tigrfam_recA protein 97.1 0.0016 3.6E-08 55.9 7.2 81 179-266 53-140 (321)
78 PRK07003 DNA polymerase III su 97.1 0.0033 7.1E-08 59.6 9.5 46 154-204 16-61 (830)
79 TIGR03345 VI_ClpV1 type VI sec 97.1 0.00056 1.2E-08 66.6 4.6 46 154-205 187-232 (852)
80 PHA02544 44 clamp loader, smal 97.1 0.00068 1.5E-08 58.5 4.7 46 154-204 21-66 (316)
81 PRK08233 hypothetical protein; 97.1 0.00045 9.7E-09 54.4 3.3 25 181-205 3-27 (182)
82 TIGR00602 rad24 checkpoint pro 97.1 0.0008 1.7E-08 63.0 5.3 52 152-204 82-133 (637)
83 KOG2004 Mitochondrial ATP-depe 97.1 0.0041 8.9E-08 58.0 9.6 52 153-204 410-461 (906)
84 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.00082 1.8E-08 54.9 4.8 55 159-220 22-76 (226)
85 PRK14958 DNA polymerase III su 97.1 0.0033 7.3E-08 57.7 9.2 46 154-204 16-61 (509)
86 PRK00771 signal recognition pa 97.1 0.004 8.8E-08 55.9 9.4 26 180-205 94-119 (437)
87 PRK12402 replication factor C 97.1 0.00068 1.5E-08 58.9 4.5 46 154-205 15-60 (337)
88 PRK12323 DNA polymerase III su 97.1 0.0033 7.3E-08 58.7 9.1 46 154-204 16-61 (700)
89 PF13238 AAA_18: AAA domain; P 97.1 0.00046 1E-08 50.8 2.9 21 184-204 1-21 (129)
90 cd00983 recA RecA is a bacter 97.1 0.0019 4.1E-08 55.6 7.0 81 179-266 53-140 (325)
91 PRK12724 flagellar biosynthesi 97.1 0.0017 3.7E-08 57.7 6.8 25 180-204 222-246 (432)
92 PTZ00088 adenylate kinase 1; P 97.0 0.00059 1.3E-08 56.0 3.6 22 183-204 8-29 (229)
93 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0043 9.2E-08 52.1 8.6 85 181-266 69-170 (274)
94 PRK05439 pantothenate kinase; 97.0 0.0068 1.5E-07 52.0 9.7 27 178-204 83-109 (311)
95 PRK00440 rfc replication facto 97.0 0.003 6.4E-08 54.4 7.7 46 154-205 17-62 (319)
96 COG1618 Predicted nucleotide k 97.0 0.00066 1.4E-08 51.8 3.1 26 181-206 5-30 (179)
97 PLN03186 DNA repair protein RA 97.0 0.0044 9.5E-08 53.9 8.6 86 180-266 122-225 (342)
98 PRK09354 recA recombinase A; P 97.0 0.0026 5.5E-08 55.3 7.1 81 179-266 58-145 (349)
99 PRK06547 hypothetical protein; 97.0 0.0012 2.7E-08 51.7 4.7 26 180-205 14-39 (172)
100 PRK12723 flagellar biosynthesi 97.0 0.0043 9.3E-08 54.9 8.5 25 180-204 173-197 (388)
101 PRK10865 protein disaggregatio 96.9 0.00093 2E-08 65.2 4.6 46 154-205 178-223 (857)
102 KOG1532 GTPase XAB1, interacts 96.9 0.0049 1.1E-07 51.2 8.0 84 179-264 17-121 (366)
103 PRK08691 DNA polymerase III su 96.9 0.0039 8.5E-08 58.7 8.4 46 154-204 16-61 (709)
104 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.0013 2.7E-08 52.0 4.6 22 183-204 1-22 (183)
105 PRK14950 DNA polymerase III su 96.9 0.0019 4.1E-08 60.5 6.4 46 154-204 16-61 (585)
106 TIGR02236 recomb_radA DNA repa 96.9 0.0048 1E-07 53.1 8.5 57 180-237 94-155 (310)
107 TIGR02881 spore_V_K stage V sp 96.9 0.0015 3.3E-08 54.8 5.3 50 155-204 7-65 (261)
108 cd01120 RecA-like_NTPases RecA 96.9 0.0046 1E-07 47.2 7.7 39 183-223 1-40 (165)
109 PRK05642 DNA replication initi 96.9 0.0031 6.6E-08 52.1 6.9 38 181-219 45-82 (234)
110 PRK14723 flhF flagellar biosyn 96.9 0.0089 1.9E-07 57.0 10.6 78 181-260 185-265 (767)
111 PRK14961 DNA polymerase III su 96.9 0.0014 3.1E-08 57.7 5.1 47 154-205 16-62 (363)
112 PF13671 AAA_33: AAA domain; P 96.9 0.00088 1.9E-08 50.5 3.3 22 183-204 1-22 (143)
113 PRK08084 DNA replication initi 96.9 0.0018 3.8E-08 53.5 5.3 39 181-220 45-83 (235)
114 COG2255 RuvB Holliday junction 96.9 0.001 2.2E-08 55.4 3.7 52 154-206 26-77 (332)
115 PRK12726 flagellar biosynthesi 96.9 0.0052 1.1E-07 53.9 8.3 25 180-204 205-229 (407)
116 PRK14969 DNA polymerase III su 96.9 0.0081 1.7E-07 55.5 9.9 46 154-204 16-61 (527)
117 PRK08116 hypothetical protein; 96.9 0.0042 9.2E-08 52.3 7.5 36 182-218 115-150 (268)
118 PRK06762 hypothetical protein; 96.9 0.0009 1.9E-08 52.0 3.2 23 182-204 3-25 (166)
119 cd02019 NK Nucleoside/nucleoti 96.9 0.0008 1.7E-08 44.2 2.4 22 183-204 1-22 (69)
120 TIGR01242 26Sp45 26S proteasom 96.9 0.0012 2.5E-08 58.3 4.1 54 152-205 120-180 (364)
121 COG1428 Deoxynucleoside kinase 96.9 0.00083 1.8E-08 53.6 2.8 26 181-206 4-29 (216)
122 PF05673 DUF815: Protein of un 96.8 0.0016 3.4E-08 53.5 4.4 52 151-204 24-75 (249)
123 cd02023 UMPK Uridine monophosp 96.8 0.00071 1.5E-08 54.2 2.4 22 183-204 1-22 (198)
124 COG0468 RecA RecA/RadA recombi 96.8 0.0062 1.3E-07 51.3 8.1 85 179-266 58-148 (279)
125 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0065 1.4E-07 52.4 8.4 86 180-266 95-198 (316)
126 PF08423 Rad51: Rad51; InterP 96.8 0.0062 1.3E-07 51.0 8.0 85 181-266 38-140 (256)
127 PRK12377 putative replication 96.8 0.0017 3.6E-08 54.0 4.6 38 181-219 101-138 (248)
128 COG2909 MalT ATP-dependent tra 96.8 0.02 4.2E-07 54.6 11.9 97 163-266 24-136 (894)
129 COG1102 Cmk Cytidylate kinase 96.8 0.0024 5.1E-08 48.8 4.8 44 183-238 2-45 (179)
130 PRK14721 flhF flagellar biosyn 96.8 0.0087 1.9E-07 53.5 9.2 25 180-204 190-214 (420)
131 PRK14962 DNA polymerase III su 96.8 0.0017 3.8E-08 59.0 4.9 46 154-204 14-59 (472)
132 PRK06217 hypothetical protein; 96.8 0.0027 5.8E-08 50.3 5.5 36 182-217 2-39 (183)
133 PRK06995 flhF flagellar biosyn 96.8 0.012 2.5E-07 53.6 10.0 25 181-205 256-280 (484)
134 PHA00729 NTP-binding motif con 96.8 0.002 4.4E-08 52.4 4.8 24 181-204 17-40 (226)
135 TIGR02238 recomb_DMC1 meiotic 96.8 0.013 2.9E-07 50.4 10.0 58 180-238 95-157 (313)
136 PRK07994 DNA polymerase III su 96.8 0.0064 1.4E-07 57.2 8.6 46 154-204 16-61 (647)
137 PRK06893 DNA replication initi 96.8 0.0089 1.9E-07 49.1 8.7 38 181-219 39-76 (229)
138 PTZ00035 Rad51 protein; Provis 96.8 0.011 2.3E-07 51.6 9.5 86 180-266 117-220 (337)
139 TIGR00763 lon ATP-dependent pr 96.8 0.0051 1.1E-07 59.6 8.0 52 154-205 320-371 (775)
140 COG0194 Gmk Guanylate kinase [ 96.7 0.0019 4.1E-08 50.6 4.0 24 181-204 4-27 (191)
141 PF03205 MobB: Molybdopterin g 96.7 0.0021 4.5E-08 48.6 4.2 39 182-220 1-39 (140)
142 COG4608 AppF ABC-type oligopep 96.7 0.009 2E-07 49.6 8.1 85 181-266 39-134 (268)
143 PLN03187 meiotic recombination 96.7 0.011 2.4E-07 51.5 9.1 86 180-266 125-228 (344)
144 TIGR03689 pup_AAA proteasome A 96.7 0.0067 1.5E-07 55.5 8.1 52 154-205 182-240 (512)
145 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0014 2.9E-08 51.9 3.2 25 180-204 2-26 (188)
146 PRK14527 adenylate kinase; Pro 96.7 0.0025 5.4E-08 50.8 4.7 25 181-205 6-30 (191)
147 KOG0733 Nuclear AAA ATPase (VC 96.7 0.0096 2.1E-07 54.7 8.6 54 154-207 190-249 (802)
148 PF07728 AAA_5: AAA domain (dy 96.7 0.0032 7E-08 47.3 4.9 42 184-229 2-43 (139)
149 PRK03839 putative kinase; Prov 96.7 0.0013 2.8E-08 51.9 2.8 23 183-205 2-24 (180)
150 PF00004 AAA: ATPase family as 96.7 0.0012 2.7E-08 48.7 2.5 22 184-205 1-22 (132)
151 PRK14956 DNA polymerase III su 96.7 0.0025 5.5E-08 57.5 4.8 46 154-204 18-63 (484)
152 PRK03992 proteasome-activating 96.7 0.002 4.2E-08 57.3 4.0 52 153-204 130-188 (389)
153 PRK04040 adenylate kinase; Pro 96.7 0.0017 3.6E-08 51.7 3.3 24 181-204 2-25 (188)
154 TIGR01425 SRP54_euk signal rec 96.6 0.012 2.7E-07 52.5 9.0 24 180-203 99-122 (429)
155 TIGR03263 guanyl_kin guanylate 96.6 0.0016 3.4E-08 51.3 3.0 23 182-204 2-24 (180)
156 cd02024 NRK1 Nicotinamide ribo 96.6 0.0013 2.8E-08 52.3 2.4 23 183-205 1-23 (187)
157 TIGR02322 phosphon_PhnN phosph 96.6 0.0017 3.7E-08 51.1 3.0 23 182-204 2-24 (179)
158 PRK10751 molybdopterin-guanine 96.6 0.0023 5E-08 50.0 3.7 26 180-205 5-30 (173)
159 cd02028 UMPK_like Uridine mono 96.6 0.0015 3.2E-08 51.6 2.5 22 183-204 1-22 (179)
160 TIGR00064 ftsY signal recognit 96.6 0.0093 2E-07 50.4 7.5 25 180-204 71-95 (272)
161 PRK00889 adenylylsulfate kinas 96.6 0.0023 5E-08 50.2 3.6 25 181-205 4-28 (175)
162 PRK11034 clpA ATP-dependent Cl 96.6 0.0026 5.6E-08 61.0 4.4 57 154-216 186-247 (758)
163 PRK07764 DNA polymerase III su 96.6 0.026 5.7E-07 54.8 11.2 47 154-205 15-61 (824)
164 PRK00300 gmk guanylate kinase; 96.6 0.002 4.4E-08 51.8 3.2 24 181-204 5-28 (205)
165 PRK14738 gmk guanylate kinase; 96.5 0.0026 5.6E-08 51.4 3.7 25 180-204 12-36 (206)
166 COG0563 Adk Adenylate kinase a 96.5 0.0035 7.7E-08 49.4 4.3 24 183-206 2-25 (178)
167 PRK14974 cell division protein 96.5 0.01 2.2E-07 51.6 7.4 25 180-204 139-163 (336)
168 PRK06067 flagellar accessory p 96.5 0.011 2.4E-07 48.6 7.5 83 180-266 24-127 (234)
169 PRK08727 hypothetical protein; 96.5 0.015 3.3E-07 47.9 8.2 38 182-220 42-79 (233)
170 TIGR00362 DnaA chromosomal rep 96.5 0.019 4.1E-07 51.4 9.4 38 181-218 136-174 (405)
171 PRK14088 dnaA chromosomal repl 96.5 0.0062 1.3E-07 55.0 6.2 38 181-218 130-168 (440)
172 cd02020 CMPK Cytidine monophos 96.5 0.0019 4E-08 48.9 2.4 22 183-204 1-22 (147)
173 PRK03846 adenylylsulfate kinas 96.5 0.0028 6.1E-08 50.8 3.6 25 180-204 23-47 (198)
174 PRK00131 aroK shikimate kinase 96.5 0.0024 5.1E-08 49.8 3.1 25 181-205 4-28 (175)
175 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.018 4E-07 47.5 8.5 48 180-230 20-67 (237)
176 PRK08903 DnaA regulatory inact 96.5 0.0059 1.3E-07 50.0 5.5 25 181-205 42-66 (227)
177 cd01428 ADK Adenylate kinase ( 96.5 0.0047 1E-07 49.1 4.8 21 184-204 2-22 (194)
178 PRK14955 DNA polymerase III su 96.5 0.0042 9.1E-08 55.4 4.8 46 154-204 16-61 (397)
179 PF08477 Miro: Miro-like prote 96.4 0.0027 5.9E-08 46.1 3.0 23 184-206 2-24 (119)
180 PRK06002 fliI flagellum-specif 96.4 0.024 5.1E-07 51.0 9.4 84 181-266 165-261 (450)
181 COG3640 CooC CO dehydrogenase 96.4 0.0038 8.3E-08 50.7 4.0 22 183-204 2-23 (255)
182 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0056 1.2E-07 45.7 4.6 41 161-205 6-46 (133)
183 PRK00625 shikimate kinase; Pro 96.4 0.0022 4.7E-08 50.3 2.6 22 183-204 2-23 (173)
184 PF00154 RecA: recA bacterial 96.4 0.0073 1.6E-07 51.9 5.9 81 179-266 51-138 (322)
185 PRK05896 DNA polymerase III su 96.4 0.0043 9.3E-08 57.6 4.8 46 154-204 16-61 (605)
186 CHL00181 cbbX CbbX; Provisiona 96.4 0.0075 1.6E-07 51.3 5.9 23 182-204 60-82 (287)
187 PRK10787 DNA-binding ATP-depen 96.4 0.0031 6.7E-08 60.9 4.0 51 154-204 322-372 (784)
188 KOG0744 AAA+-type ATPase [Post 96.4 0.013 2.9E-07 49.9 7.1 72 181-262 177-251 (423)
189 cd00071 GMPK Guanosine monopho 96.4 0.0024 5.3E-08 48.0 2.6 22 183-204 1-22 (137)
190 PRK10536 hypothetical protein; 96.4 0.02 4.4E-07 47.6 8.0 53 154-214 55-108 (262)
191 PRK10078 ribose 1,5-bisphospho 96.4 0.003 6.5E-08 50.1 3.1 23 182-204 3-25 (186)
192 PRK08972 fliI flagellum-specif 96.4 0.017 3.8E-07 51.6 8.1 83 181-266 162-259 (444)
193 COG1936 Predicted nucleotide k 96.4 0.0026 5.7E-08 49.2 2.6 20 183-202 2-21 (180)
194 TIGR00390 hslU ATP-dependent p 96.4 0.012 2.6E-07 52.3 7.0 80 154-233 12-102 (441)
195 KOG1969 DNA replication checkp 96.4 0.015 3.3E-07 54.5 7.8 78 155-236 272-377 (877)
196 PRK07952 DNA replication prote 96.4 0.02 4.4E-07 47.4 8.0 37 181-218 99-135 (244)
197 PRK13531 regulatory ATPase Rav 96.4 0.005 1.1E-07 55.7 4.6 42 155-204 21-62 (498)
198 cd03222 ABC_RNaseL_inhibitor T 96.4 0.018 3.9E-07 45.4 7.3 24 181-204 25-48 (177)
199 TIGR02397 dnaX_nterm DNA polym 96.3 0.0062 1.3E-07 53.3 5.1 46 154-204 14-59 (355)
200 cd02021 GntK Gluconate kinase 96.3 0.0027 5.8E-08 48.4 2.5 22 183-204 1-22 (150)
201 PRK13975 thymidylate kinase; P 96.3 0.0034 7.4E-08 50.1 3.1 24 182-205 3-26 (196)
202 COG1223 Predicted ATPase (AAA+ 96.3 0.0052 1.1E-07 50.8 4.1 53 154-206 121-176 (368)
203 PRK13765 ATP-dependent proteas 96.3 0.007 1.5E-07 56.9 5.5 74 154-237 31-105 (637)
204 PRK05201 hslU ATP-dependent pr 96.3 0.014 3E-07 51.9 7.0 52 154-205 15-74 (443)
205 KOG0727 26S proteasome regulat 96.3 0.16 3.4E-06 42.0 12.5 55 151-205 152-213 (408)
206 TIGR00041 DTMP_kinase thymidyl 96.3 0.033 7.1E-07 44.3 8.7 24 182-205 4-27 (195)
207 TIGR00176 mobB molybdopterin-g 96.3 0.0039 8.4E-08 48.0 3.1 36 183-218 1-36 (155)
208 COG0467 RAD55 RecA-superfamily 96.3 0.01 2.2E-07 49.7 5.9 48 180-231 22-70 (260)
209 COG1124 DppF ABC-type dipeptid 96.3 0.0058 1.3E-07 49.9 4.2 23 181-203 33-55 (252)
210 PRK15453 phosphoribulokinase; 96.3 0.026 5.6E-07 47.6 8.1 25 180-204 4-28 (290)
211 PF12061 DUF3542: Protein of u 96.3 0.0042 9.1E-08 52.3 3.4 57 11-67 316-373 (402)
212 KOG3347 Predicted nucleotide k 96.3 0.0074 1.6E-07 45.5 4.3 24 181-204 7-30 (176)
213 cd00227 CPT Chloramphenicol (C 96.2 0.0035 7.7E-08 49.2 2.8 23 182-204 3-25 (175)
214 PF01583 APS_kinase: Adenylyls 96.2 0.0046 1E-07 47.5 3.4 25 181-205 2-26 (156)
215 cd01121 Sms Sms (bacterial rad 96.2 0.022 4.7E-07 50.3 7.9 78 181-266 82-165 (372)
216 PRK00279 adk adenylate kinase; 96.2 0.0077 1.7E-07 49.0 4.8 22 183-204 2-23 (215)
217 COG0542 clpA ATP-binding subun 96.2 0.011 2.3E-07 56.4 6.3 51 154-204 491-544 (786)
218 PRK13949 shikimate kinase; Pro 96.2 0.0033 7.2E-08 49.1 2.5 23 183-205 3-25 (169)
219 TIGR00073 hypB hydrogenase acc 96.2 0.0044 9.4E-08 50.1 3.3 25 180-204 21-45 (207)
220 PF00005 ABC_tran: ABC transpo 96.2 0.0045 9.7E-08 46.3 3.1 25 181-205 11-35 (137)
221 PRK13947 shikimate kinase; Pro 96.2 0.0037 7.9E-08 48.7 2.7 23 183-205 3-25 (171)
222 cd00820 PEPCK_HprK Phosphoenol 96.2 0.0049 1.1E-07 44.1 3.0 22 181-202 15-36 (107)
223 PRK14951 DNA polymerase III su 96.2 0.007 1.5E-07 56.7 4.9 45 154-203 16-60 (618)
224 PRK14737 gmk guanylate kinase; 96.2 0.0056 1.2E-07 48.6 3.7 25 180-204 3-27 (186)
225 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.0072 1.6E-07 52.2 4.5 52 153-204 60-111 (358)
226 PRK04296 thymidine kinase; Pro 96.2 0.0057 1.2E-07 48.7 3.7 23 182-204 3-25 (190)
227 TIGR02640 gas_vesic_GvpN gas v 96.2 0.018 3.9E-07 48.4 6.9 54 162-227 10-63 (262)
228 TIGR01313 therm_gnt_kin carboh 96.2 0.0032 6.9E-08 48.7 2.2 21 184-204 1-21 (163)
229 COG2019 AdkA Archaeal adenylat 96.2 0.0053 1.1E-07 47.2 3.2 24 181-204 4-27 (189)
230 PF00910 RNA_helicase: RNA hel 96.2 0.0031 6.7E-08 45.3 1.9 21 184-204 1-21 (107)
231 cd00464 SK Shikimate kinase (S 96.2 0.004 8.8E-08 47.4 2.7 22 184-205 2-23 (154)
232 COG1100 GTPase SAR1 and relate 96.2 0.0041 8.9E-08 50.4 2.9 24 182-205 6-29 (219)
233 PRK12678 transcription termina 96.2 0.0051 1.1E-07 56.5 3.7 94 165-266 405-510 (672)
234 PF00625 Guanylate_kin: Guanyl 96.1 0.0054 1.2E-07 48.5 3.4 35 181-217 2-37 (183)
235 PRK08927 fliI flagellum-specif 96.1 0.027 5.8E-07 50.6 8.1 83 181-266 158-255 (442)
236 PRK09519 recA DNA recombinatio 96.1 0.023 4.9E-07 54.5 8.0 80 180-266 59-145 (790)
237 PRK14528 adenylate kinase; Pro 96.1 0.0092 2E-07 47.4 4.6 23 182-204 2-24 (186)
238 PRK10865 protein disaggregatio 96.1 0.026 5.7E-07 55.3 8.6 51 154-204 568-621 (857)
239 PF00158 Sigma54_activat: Sigm 96.1 0.026 5.7E-07 44.0 7.1 45 156-204 1-45 (168)
240 TIGR01351 adk adenylate kinase 96.1 0.0081 1.8E-07 48.6 4.4 21 184-204 2-22 (210)
241 PF14516 AAA_35: AAA-like doma 96.1 0.1 2.2E-06 45.4 11.4 105 154-266 11-134 (331)
242 cd01130 VirB11-like_ATPase Typ 96.1 0.0094 2E-07 47.3 4.6 37 161-204 12-48 (186)
243 PRK14530 adenylate kinase; Pro 96.1 0.0045 9.8E-08 50.3 2.8 22 183-204 5-26 (215)
244 cd02027 APSK Adenosine 5'-phos 96.1 0.0042 9.1E-08 47.4 2.4 22 183-204 1-22 (149)
245 cd04139 RalA_RalB RalA/RalB su 96.1 0.005 1.1E-07 47.1 2.9 23 183-205 2-24 (164)
246 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.04 8.6E-07 45.1 8.4 40 180-220 19-58 (229)
247 PRK14964 DNA polymerase III su 96.1 0.0085 1.8E-07 54.6 4.7 45 154-203 13-57 (491)
248 PRK13695 putative NTPase; Prov 96.1 0.005 1.1E-07 48.2 2.9 23 183-205 2-24 (174)
249 PRK06620 hypothetical protein; 96.1 0.0051 1.1E-07 50.0 3.0 24 182-205 45-68 (214)
250 PF03193 DUF258: Protein of un 96.0 0.011 2.5E-07 45.5 4.6 36 161-205 24-59 (161)
251 PRK14952 DNA polymerase III su 96.0 0.0093 2E-07 55.6 4.9 46 154-204 13-58 (584)
252 COG4240 Predicted kinase [Gene 96.0 0.049 1.1E-06 44.2 8.3 80 180-259 49-133 (300)
253 PRK04328 hypothetical protein; 96.0 0.022 4.7E-07 47.5 6.7 41 180-221 22-62 (249)
254 PRK12339 2-phosphoglycerate ki 96.0 0.0063 1.4E-07 48.8 3.3 24 181-204 3-26 (197)
255 COG1120 FepC ABC-type cobalami 96.0 0.0059 1.3E-07 50.7 3.3 24 181-204 28-51 (258)
256 PRK14970 DNA polymerase III su 96.0 0.01 2.2E-07 52.3 5.0 46 154-204 17-62 (367)
257 PRK05057 aroK shikimate kinase 96.0 0.0052 1.1E-07 48.1 2.8 23 182-204 5-27 (172)
258 PRK06645 DNA polymerase III su 96.0 0.0097 2.1E-07 54.6 4.9 46 154-204 21-66 (507)
259 PRK09111 DNA polymerase III su 96.0 0.0089 1.9E-07 56.0 4.7 46 154-204 24-69 (598)
260 PRK05800 cobU adenosylcobinami 96.0 0.026 5.6E-07 44.2 6.6 23 182-204 2-24 (170)
261 cd02029 PRK_like Phosphoribulo 96.0 0.022 4.8E-07 47.6 6.5 22 183-204 1-22 (277)
262 PLN02318 phosphoribulokinase/u 96.0 0.0093 2E-07 55.2 4.7 25 180-204 64-88 (656)
263 COG1116 TauB ABC-type nitrate/ 96.0 0.0056 1.2E-07 50.2 2.9 23 181-203 29-51 (248)
264 TIGR03346 chaperone_ClpB ATP-d 96.0 0.038 8.3E-07 54.2 9.2 51 154-204 565-618 (852)
265 PRK08533 flagellar accessory p 96.0 0.029 6.3E-07 46.1 7.2 48 181-231 24-71 (230)
266 cd01672 TMPK Thymidine monopho 96.0 0.0053 1.2E-07 48.8 2.8 23 183-205 2-24 (200)
267 PLN02348 phosphoribulokinase 96.0 0.0097 2.1E-07 52.4 4.5 25 180-204 48-72 (395)
268 PRK08181 transposase; Validate 96.0 0.018 4E-07 48.4 6.0 23 182-204 107-129 (269)
269 CHL00176 ftsH cell division pr 96.0 0.02 4.3E-07 54.1 6.8 52 154-205 183-240 (638)
270 PRK12597 F0F1 ATP synthase sub 96.0 0.025 5.4E-07 51.1 7.2 86 181-266 143-244 (461)
271 PRK08939 primosomal protein Dn 96.0 0.035 7.5E-07 47.7 7.8 59 158-219 135-193 (306)
272 PF07726 AAA_3: ATPase family 96.0 0.0058 1.3E-07 45.1 2.6 21 184-204 2-22 (131)
273 PF06309 Torsin: Torsin; Inte 96.0 0.017 3.6E-07 42.5 5.0 47 155-204 26-76 (127)
274 TIGR00764 lon_rel lon-related 96.0 0.026 5.6E-07 53.2 7.5 76 154-238 18-93 (608)
275 TIGR02880 cbbX_cfxQ probable R 96.0 0.014 3E-07 49.7 5.3 22 183-204 60-81 (284)
276 PLN02796 D-glycerate 3-kinase 96.0 0.007 1.5E-07 52.4 3.5 26 180-205 99-124 (347)
277 PF01926 MMR_HSR1: 50S ribosom 96.0 0.0076 1.6E-07 43.7 3.2 21 184-204 2-22 (116)
278 PRK09825 idnK D-gluconate kina 96.0 0.0063 1.4E-07 47.9 3.0 24 182-205 4-27 (176)
279 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.9 0.0063 1.4E-07 49.4 3.0 24 181-204 30-53 (218)
280 PRK14529 adenylate kinase; Pro 95.9 0.017 3.6E-07 47.2 5.4 22 184-205 3-24 (223)
281 PRK00149 dnaA chromosomal repl 95.9 0.049 1.1E-06 49.5 9.0 25 181-205 148-172 (450)
282 PF13521 AAA_28: AAA domain; P 95.9 0.0056 1.2E-07 47.4 2.5 21 184-204 2-22 (163)
283 PRK08356 hypothetical protein; 95.9 0.0083 1.8E-07 48.0 3.5 22 181-202 5-26 (195)
284 COG1484 DnaC DNA replication p 95.9 0.018 3.9E-07 48.1 5.7 26 181-206 105-130 (254)
285 TIGR00017 cmk cytidylate kinas 95.9 0.018 3.8E-07 47.0 5.5 23 182-204 3-25 (217)
286 cd01862 Rab7 Rab7 subfamily. 95.9 0.0067 1.4E-07 46.9 3.0 22 183-204 2-23 (172)
287 COG1126 GlnQ ABC-type polar am 95.9 0.0087 1.9E-07 48.1 3.6 35 181-217 28-62 (240)
288 PF03266 NTPase_1: NTPase; In 95.9 0.0061 1.3E-07 47.6 2.7 22 184-205 2-23 (168)
289 PRK09087 hypothetical protein; 95.9 0.0065 1.4E-07 49.9 2.9 24 181-204 44-67 (226)
290 PRK14954 DNA polymerase III su 95.9 0.012 2.7E-07 55.2 5.1 46 154-204 16-61 (620)
291 TIGR03345 VI_ClpV1 type VI sec 95.9 0.028 6.2E-07 55.0 7.7 51 154-204 566-619 (852)
292 TIGR01287 nifH nitrogenase iro 95.9 0.0056 1.2E-07 51.7 2.6 22 182-203 1-22 (275)
293 PLN02200 adenylate kinase fami 95.9 0.0067 1.4E-07 50.0 3.0 25 180-204 42-66 (234)
294 cd03225 ABC_cobalt_CbiO_domain 95.9 0.0068 1.5E-07 49.0 3.0 24 181-204 27-50 (211)
295 smart00173 RAS Ras subfamily o 95.9 0.0067 1.5E-07 46.6 2.9 22 183-204 2-23 (164)
296 PRK10416 signal recognition pa 95.9 0.0085 1.8E-07 51.7 3.7 25 180-204 113-137 (318)
297 cd01122 GP4d_helicase GP4d_hel 95.9 0.079 1.7E-06 44.5 9.6 50 181-232 30-79 (271)
298 PF10662 PduV-EutP: Ethanolami 95.9 0.0074 1.6E-07 45.5 2.9 24 182-205 2-25 (143)
299 cd03116 MobB Molybdenum is an 95.9 0.0077 1.7E-07 46.5 3.1 24 182-205 2-25 (159)
300 PRK04182 cytidylate kinase; Pr 95.9 0.0067 1.5E-07 47.5 2.8 22 183-204 2-23 (180)
301 PTZ00454 26S protease regulato 95.9 0.013 2.8E-07 52.2 4.9 51 154-204 145-202 (398)
302 cd04119 RJL RJL (RabJ-Like) su 95.9 0.0073 1.6E-07 46.4 2.9 22 184-205 3-24 (168)
303 PF03308 ArgK: ArgK protein; 95.9 0.017 3.6E-07 47.9 5.1 40 162-205 14-53 (266)
304 PRK14493 putative bifunctional 95.9 0.007 1.5E-07 51.1 3.0 24 182-205 2-25 (274)
305 PF00006 ATP-synt_ab: ATP synt 95.9 0.027 5.8E-07 45.8 6.2 49 181-232 15-64 (215)
306 PRK14959 DNA polymerase III su 95.8 0.057 1.2E-06 50.6 9.1 47 154-205 16-62 (624)
307 cd04155 Arl3 Arl3 subfamily. 95.8 0.007 1.5E-07 47.0 2.8 24 181-204 14-37 (173)
308 TIGR00960 3a0501s02 Type II (G 95.8 0.0073 1.6E-07 49.0 3.0 24 181-204 29-52 (216)
309 PRK08149 ATP synthase SpaL; Va 95.8 0.056 1.2E-06 48.4 8.7 83 181-266 151-248 (428)
310 COG0470 HolB ATPase involved i 95.8 0.068 1.5E-06 46.0 9.2 80 155-238 2-104 (325)
311 COG1222 RPT1 ATP-dependent 26S 95.8 0.019 4.1E-07 49.6 5.4 52 154-205 151-209 (406)
312 COG1763 MobB Molybdopterin-gua 95.8 0.0073 1.6E-07 46.6 2.7 24 181-204 2-25 (161)
313 TIGR01166 cbiO cobalt transpor 95.8 0.0077 1.7E-07 47.9 3.0 24 181-204 18-41 (190)
314 cd04163 Era Era subfamily. Er 95.8 0.0091 2E-07 45.5 3.3 24 181-204 3-26 (168)
315 cd03229 ABC_Class3 This class 95.8 0.008 1.7E-07 47.3 3.1 24 181-204 26-49 (178)
316 TIGR03498 FliI_clade3 flagella 95.8 0.05 1.1E-06 48.7 8.3 83 181-266 140-237 (418)
317 cd01131 PilT Pilus retraction 95.8 0.011 2.4E-07 47.4 3.9 23 182-204 2-24 (198)
318 PRK13230 nitrogenase reductase 95.8 0.0073 1.6E-07 51.1 2.9 23 182-204 2-24 (279)
319 PRK14526 adenylate kinase; Pro 95.8 0.011 2.4E-07 48.0 3.8 21 184-204 3-23 (211)
320 PRK06761 hypothetical protein; 95.8 0.01 2.2E-07 50.2 3.7 25 182-206 4-28 (282)
321 PRK09112 DNA polymerase III su 95.8 0.018 4E-07 50.4 5.4 48 152-204 21-68 (351)
322 smart00072 GuKc Guanylate kina 95.8 0.016 3.4E-07 45.9 4.6 24 181-204 2-25 (184)
323 cd04159 Arl10_like Arl10-like 95.8 0.0079 1.7E-07 45.5 2.8 21 184-204 2-22 (159)
324 cd03297 ABC_ModC_molybdenum_tr 95.8 0.0092 2E-07 48.4 3.3 24 180-204 23-46 (214)
325 PTZ00361 26 proteosome regulat 95.8 0.015 3.3E-07 52.3 4.9 51 154-204 183-240 (438)
326 PF13481 AAA_25: AAA domain; P 95.8 0.067 1.4E-06 42.4 8.2 40 182-221 33-81 (193)
327 cd04113 Rab4 Rab4 subfamily. 95.8 0.0084 1.8E-07 45.9 2.9 22 184-205 3-24 (161)
328 PRK13768 GTPase; Provisional 95.8 0.0085 1.8E-07 50.1 3.1 23 182-204 3-25 (253)
329 cd03261 ABC_Org_Solvent_Resist 95.8 0.0083 1.8E-07 49.4 3.0 24 181-204 26-49 (235)
330 PRK13232 nifH nitrogenase redu 95.7 0.0075 1.6E-07 50.9 2.8 22 182-203 2-23 (273)
331 cd01135 V_A-ATPase_B V/A-type 95.7 0.054 1.2E-06 45.5 7.8 86 181-266 69-173 (276)
332 cd03263 ABC_subfamily_A The AB 95.7 0.0086 1.9E-07 48.7 3.0 24 181-204 28-51 (220)
333 PRK06835 DNA replication prote 95.7 0.0053 1.1E-07 53.2 1.8 37 182-219 184-220 (329)
334 PRK06936 type III secretion sy 95.7 0.06 1.3E-06 48.3 8.5 40 181-223 162-201 (439)
335 TIGR02315 ABC_phnC phosphonate 95.7 0.0085 1.8E-07 49.6 3.0 24 181-204 28-51 (243)
336 PRK13946 shikimate kinase; Pro 95.7 0.0074 1.6E-07 47.8 2.6 25 181-205 10-34 (184)
337 COG0237 CoaE Dephospho-CoA kin 95.7 0.0091 2E-07 47.9 3.1 23 181-203 2-24 (201)
338 PRK07594 type III secretion sy 95.7 0.056 1.2E-06 48.5 8.3 83 181-266 155-252 (433)
339 PRK05922 type III secretion sy 95.7 0.07 1.5E-06 47.9 8.9 83 181-266 157-254 (434)
340 TIGR02902 spore_lonB ATP-depen 95.7 0.014 3.1E-07 54.0 4.7 44 155-204 66-109 (531)
341 PLN02165 adenylate isopentenyl 95.7 0.0095 2.1E-07 51.4 3.3 24 181-204 43-66 (334)
342 PLN02924 thymidylate kinase 95.7 0.035 7.5E-07 45.4 6.4 53 181-233 16-68 (220)
343 PRK00023 cmk cytidylate kinase 95.7 0.027 5.8E-07 46.2 5.8 24 182-205 5-28 (225)
344 cd03293 ABC_NrtD_SsuB_transpor 95.7 0.009 1.9E-07 48.7 3.0 24 181-204 30-53 (220)
345 TIGR02173 cyt_kin_arch cytidyl 95.7 0.0091 2E-07 46.3 2.9 22 183-204 2-23 (171)
346 TIGR02673 FtsE cell division A 95.7 0.0092 2E-07 48.3 3.0 24 181-204 28-51 (214)
347 TIGR00231 small_GTP small GTP- 95.7 0.0094 2E-07 44.8 2.9 23 183-205 3-25 (161)
348 PTZ00185 ATPase alpha subunit; 95.7 0.081 1.7E-06 48.3 9.1 55 181-235 189-250 (574)
349 cd03256 ABC_PhnC_transporter A 95.7 0.009 2E-07 49.3 3.0 24 181-204 27-50 (241)
350 cd03269 ABC_putative_ATPase Th 95.7 0.0093 2E-07 48.2 3.1 24 181-204 26-49 (210)
351 PRK00698 tmk thymidylate kinas 95.7 0.0095 2.1E-07 47.8 3.1 23 182-204 4-26 (205)
352 smart00175 RAB Rab subfamily o 95.7 0.0095 2.1E-07 45.6 3.0 22 184-205 3-24 (164)
353 TIGR02528 EutP ethanolamine ut 95.7 0.009 2E-07 44.8 2.8 22 183-204 2-23 (142)
354 PRK07940 DNA polymerase III su 95.7 0.017 3.6E-07 51.4 4.8 50 154-203 5-58 (394)
355 cd03238 ABC_UvrA The excision 95.7 0.01 2.2E-07 46.7 3.1 23 181-203 21-43 (176)
356 COG1136 SalX ABC-type antimicr 95.7 0.0098 2.1E-07 48.4 3.1 23 181-203 31-53 (226)
357 cd03114 ArgK-like The function 95.7 0.0083 1.8E-07 45.8 2.5 22 183-204 1-22 (148)
358 cd02040 NifH NifH gene encodes 95.7 0.0089 1.9E-07 50.2 2.9 23 182-204 2-24 (270)
359 cd01125 repA Hexameric Replica 95.7 0.07 1.5E-06 44.1 8.2 24 182-205 2-25 (239)
360 PRK13541 cytochrome c biogenes 95.7 0.0098 2.1E-07 47.5 3.0 24 181-204 26-49 (195)
361 cd03259 ABC_Carb_Solutes_like 95.7 0.0096 2.1E-07 48.2 3.0 24 181-204 26-49 (213)
362 cd04138 H_N_K_Ras_like H-Ras/N 95.7 0.0095 2.1E-07 45.4 2.9 22 183-204 3-24 (162)
363 cd01864 Rab19 Rab19 subfamily. 95.7 0.0097 2.1E-07 45.9 2.9 24 181-204 3-26 (165)
364 CHL00081 chlI Mg-protoporyphyr 95.7 0.015 3.2E-07 50.8 4.2 47 152-204 15-61 (350)
365 cd01983 Fer4_NifH The Fer4_Nif 95.7 0.0087 1.9E-07 41.3 2.4 42 183-224 1-47 (99)
366 cd03260 ABC_PstB_phosphate_tra 95.7 0.0098 2.1E-07 48.7 3.1 24 181-204 26-49 (227)
367 COG3899 Predicted ATPase [Gene 95.6 0.014 3E-07 57.1 4.5 48 155-205 1-48 (849)
368 cd02026 PRK Phosphoribulokinas 95.6 0.0078 1.7E-07 50.8 2.5 22 183-204 1-22 (273)
369 cd03264 ABC_drug_resistance_li 95.6 0.0089 1.9E-07 48.3 2.7 22 183-204 27-48 (211)
370 cd03235 ABC_Metallic_Cations A 95.6 0.0093 2E-07 48.3 2.8 24 181-204 25-48 (213)
371 PRK10584 putative ABC transpor 95.6 0.01 2.2E-07 48.6 3.1 24 181-204 36-59 (228)
372 PRK13948 shikimate kinase; Pro 95.6 0.01 2.2E-07 47.0 2.9 25 180-204 9-33 (182)
373 PF00308 Bac_DnaA: Bacterial d 95.6 0.029 6.4E-07 45.7 5.7 47 156-205 11-58 (219)
374 PRK09280 F0F1 ATP synthase sub 95.6 0.069 1.5E-06 48.3 8.5 86 181-266 144-245 (463)
375 PF00071 Ras: Ras family; Int 95.6 0.011 2.3E-07 45.3 3.1 22 184-205 2-23 (162)
376 cd02117 NifH_like This family 95.6 0.0091 2E-07 48.4 2.7 22 182-203 1-22 (212)
377 cd03226 ABC_cobalt_CbiO_domain 95.6 0.01 2.2E-07 47.8 3.0 24 181-204 26-49 (205)
378 PRK05688 fliI flagellum-specif 95.6 0.074 1.6E-06 47.9 8.6 83 181-266 168-265 (451)
379 cd01136 ATPase_flagellum-secre 95.6 0.089 1.9E-06 45.5 8.9 83 181-266 69-166 (326)
380 cd03296 ABC_CysA_sulfate_impor 95.6 0.01 2.2E-07 49.1 3.0 24 181-204 28-51 (239)
381 cd03292 ABC_FtsE_transporter F 95.6 0.01 2.2E-07 48.0 3.0 24 181-204 27-50 (214)
382 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.061 1.3E-06 45.1 7.7 40 180-220 35-74 (259)
383 cd00876 Ras Ras family. The R 95.6 0.01 2.3E-07 45.1 2.9 21 184-204 2-22 (160)
384 PRK08099 bifunctional DNA-bind 95.6 0.0088 1.9E-07 53.3 2.8 25 180-204 218-242 (399)
385 TIGR03864 PQQ_ABC_ATP ABC tran 95.6 0.01 2.2E-07 48.9 3.1 24 181-204 27-50 (236)
386 cd00154 Rab Rab family. Rab G 95.6 0.011 2.3E-07 44.7 2.9 22 184-205 3-24 (159)
387 PF03029 ATP_bind_1: Conserved 95.6 0.0077 1.7E-07 49.8 2.2 20 186-205 1-20 (238)
388 cd01132 F1_ATPase_alpha F1 ATP 95.6 0.051 1.1E-06 45.6 7.1 50 181-233 69-121 (274)
389 PRK09099 type III secretion sy 95.6 0.072 1.6E-06 48.0 8.5 83 181-266 163-260 (441)
390 cd00879 Sar1 Sar1 subfamily. 95.6 0.011 2.3E-07 46.8 3.0 23 182-204 20-42 (190)
391 TIGR02030 BchI-ChlI magnesium 95.6 0.022 4.7E-07 49.6 5.0 44 154-203 4-47 (337)
392 PRK09435 membrane ATPase/prote 95.6 0.024 5.1E-07 49.2 5.2 37 164-204 43-79 (332)
393 cd04124 RabL2 RabL2 subfamily. 95.6 0.011 2.3E-07 45.5 2.9 21 184-204 3-23 (161)
394 PF13604 AAA_30: AAA domain; P 95.6 0.023 5.1E-07 45.5 4.9 24 182-205 19-42 (196)
395 TIGR03574 selen_PSTK L-seryl-t 95.6 0.0085 1.8E-07 49.9 2.4 22 183-204 1-22 (249)
396 PF03215 Rad17: Rad17 cell cyc 95.6 0.017 3.6E-07 53.2 4.5 59 155-217 20-78 (519)
397 cd03265 ABC_DrrA DrrA is the A 95.6 0.011 2.4E-07 48.1 3.1 24 181-204 26-49 (220)
398 PRK01184 hypothetical protein; 95.6 0.011 2.3E-07 46.7 2.9 19 182-200 2-20 (184)
399 TIGR02211 LolD_lipo_ex lipopro 95.6 0.012 2.6E-07 47.9 3.2 24 181-204 31-54 (221)
400 PRK06305 DNA polymerase III su 95.6 0.02 4.3E-07 51.9 4.9 46 154-204 17-62 (451)
401 PRK03731 aroL shikimate kinase 95.6 0.01 2.2E-07 46.2 2.7 23 182-204 3-25 (171)
402 PRK10463 hydrogenase nickel in 95.6 0.023 4.9E-07 48.2 4.9 25 180-204 103-127 (290)
403 PRK09183 transposase/IS protei 95.5 0.011 2.3E-07 49.7 2.9 23 182-204 103-125 (259)
404 cd00984 DnaB_C DnaB helicase C 95.5 0.093 2E-06 43.2 8.6 50 181-232 13-62 (242)
405 cd03224 ABC_TM1139_LivF_branch 95.5 0.012 2.5E-07 48.0 3.1 24 181-204 26-49 (222)
406 PLN03046 D-glycerate 3-kinase; 95.5 0.014 3E-07 51.8 3.7 25 180-204 211-235 (460)
407 PRK13236 nitrogenase reductase 95.5 0.013 2.7E-07 50.2 3.4 25 179-203 4-28 (296)
408 PRK13233 nifH nitrogenase redu 95.5 0.011 2.3E-07 50.0 3.0 21 182-202 3-23 (275)
409 PRK13538 cytochrome c biogenes 95.5 0.012 2.5E-07 47.5 3.0 24 181-204 27-50 (204)
410 cd03257 ABC_NikE_OppD_transpor 95.5 0.011 2.4E-07 48.3 3.0 24 181-204 31-54 (228)
411 COG4987 CydC ABC-type transpor 95.5 0.028 6E-07 51.0 5.6 22 182-203 365-386 (573)
412 COG3903 Predicted ATPase [Gene 95.5 0.014 3E-07 51.2 3.6 81 180-266 13-95 (414)
413 cd02022 DPCK Dephospho-coenzym 95.5 0.0095 2.1E-07 46.9 2.4 21 183-203 1-21 (179)
414 TIGR00750 lao LAO/AO transport 95.5 0.02 4.4E-07 49.1 4.6 25 180-204 33-57 (300)
415 PRK15177 Vi polysaccharide exp 95.5 0.012 2.7E-07 47.7 3.2 24 181-204 13-36 (213)
416 cd04136 Rap_like Rap-like subf 95.5 0.012 2.5E-07 45.1 2.9 22 183-204 3-24 (163)
417 PRK10247 putative ABC transpor 95.5 0.012 2.6E-07 48.2 3.1 24 181-204 33-56 (225)
418 PRK14953 DNA polymerase III su 95.5 0.022 4.8E-07 52.1 5.1 46 154-204 16-61 (486)
419 cd03258 ABC_MetN_methionine_tr 95.5 0.012 2.5E-07 48.4 3.0 24 181-204 31-54 (233)
420 CHL00095 clpC Clp protease ATP 95.5 0.061 1.3E-06 52.6 8.4 51 154-204 509-562 (821)
421 cd03237 ABC_RNaseL_inhibitor_d 95.5 0.012 2.5E-07 49.0 3.0 25 181-205 25-49 (246)
422 cd01878 HflX HflX subfamily. 95.5 0.013 2.7E-07 47.1 3.2 25 181-205 41-65 (204)
423 PRK11629 lolD lipoprotein tran 95.5 0.012 2.6E-07 48.4 3.1 24 181-204 35-58 (233)
424 cd04123 Rab21 Rab21 subfamily. 95.5 0.012 2.6E-07 44.8 2.9 21 184-204 3-23 (162)
425 COG0714 MoxR-like ATPases [Gen 95.5 0.04 8.8E-07 47.8 6.5 63 155-229 25-87 (329)
426 KOG2859 DNA repair protein, me 95.5 0.12 2.7E-06 41.6 8.4 82 181-264 38-130 (293)
427 TIGR03608 L_ocin_972_ABC putat 95.5 0.012 2.7E-07 47.3 3.1 24 181-204 24-47 (206)
428 PRK13235 nifH nitrogenase redu 95.5 0.011 2.3E-07 50.0 2.8 22 182-203 2-23 (274)
429 TIGR00455 apsK adenylylsulfate 95.5 0.016 3.4E-07 45.9 3.6 24 181-204 18-41 (184)
430 PRK11248 tauB taurine transpor 95.5 0.012 2.6E-07 49.2 3.0 24 181-204 27-50 (255)
431 KOG0991 Replication factor C, 95.5 0.021 4.5E-07 46.5 4.2 65 154-224 27-92 (333)
432 PRK12422 chromosomal replicati 95.5 0.055 1.2E-06 49.0 7.4 25 181-205 141-165 (445)
433 TIGR01184 ntrCD nitrate transp 95.5 0.012 2.7E-07 48.2 3.1 24 181-204 11-34 (230)
434 KOG3308 Uncharacterized protei 95.5 0.043 9.4E-07 43.6 5.8 58 181-238 4-78 (225)
435 cd03301 ABC_MalK_N The N-termi 95.5 0.013 2.8E-07 47.5 3.1 24 181-204 26-49 (213)
436 PRK11823 DNA repair protein Ra 95.5 0.061 1.3E-06 48.7 7.7 80 180-266 79-163 (446)
437 cd04171 SelB SelB subfamily. 95.4 0.014 3E-07 44.6 3.1 21 183-203 2-22 (164)
438 PF06564 YhjQ: YhjQ protein; 95.4 0.012 2.6E-07 48.5 2.8 23 182-204 2-25 (243)
439 cd01673 dNK Deoxyribonucleosid 95.4 0.01 2.2E-07 47.2 2.4 22 183-204 1-22 (193)
440 PRK06526 transposase; Provisio 95.4 0.011 2.5E-07 49.3 2.7 24 182-205 99-122 (254)
441 cd01860 Rab5_related Rab5-rela 95.4 0.013 2.9E-07 44.8 2.9 23 183-205 3-25 (163)
442 cd00878 Arf_Arl Arf (ADP-ribos 95.4 0.013 2.8E-07 44.7 2.9 22 184-205 2-23 (158)
443 cd01876 YihA_EngB The YihA (En 95.4 0.012 2.7E-07 44.9 2.7 20 184-203 2-21 (170)
444 PRK11124 artP arginine transpo 95.4 0.013 2.8E-07 48.4 3.0 25 181-205 28-52 (242)
445 PF02562 PhoH: PhoH-like prote 95.4 0.022 4.7E-07 45.9 4.1 52 158-217 4-56 (205)
446 cd04101 RabL4 RabL4 (Rab-like4 95.4 0.014 3E-07 44.8 3.0 20 184-203 3-22 (164)
447 TIGR02770 nickel_nikD nickel i 95.4 0.013 2.8E-07 48.1 3.0 25 181-205 12-36 (230)
448 PF13086 AAA_11: AAA domain; P 95.4 0.018 3.9E-07 46.8 3.8 51 183-233 19-75 (236)
449 PF13245 AAA_19: Part of AAA d 95.4 0.026 5.6E-07 37.8 3.9 23 182-204 11-34 (76)
450 cd04140 ARHI_like ARHI subfami 95.4 0.014 3E-07 45.1 2.9 22 183-204 3-24 (165)
451 cd03219 ABC_Mj1267_LivG_branch 95.4 0.013 2.8E-07 48.3 2.9 24 181-204 26-49 (236)
452 PRK10908 cell division protein 95.4 0.014 3E-07 47.6 3.0 24 181-204 28-51 (222)
453 cd04160 Arfrp1 Arfrp1 subfamil 95.4 0.013 2.9E-07 45.1 2.8 20 184-203 2-21 (167)
454 cd01898 Obg Obg subfamily. Th 95.4 0.013 2.8E-07 45.2 2.8 21 184-204 3-23 (170)
455 PF07693 KAP_NTPase: KAP famil 95.4 0.072 1.6E-06 46.0 7.6 74 162-238 4-83 (325)
456 TIGR01189 ccmA heme ABC export 95.4 0.015 3.2E-07 46.6 3.1 24 181-204 26-49 (198)
457 cd03278 ABC_SMC_barmotin Barmo 95.4 0.013 2.9E-07 46.9 2.8 20 183-202 24-43 (197)
458 cd03218 ABC_YhbG The ABC trans 95.4 0.014 3E-07 47.9 3.0 24 181-204 26-49 (232)
459 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.015 3.3E-07 48.1 3.2 24 181-204 30-53 (254)
460 PRK13540 cytochrome c biogenes 95.4 0.015 3.2E-07 46.7 3.1 24 181-204 27-50 (200)
461 cd03295 ABC_OpuCA_Osmoprotecti 95.4 0.014 3.1E-07 48.3 3.1 24 181-204 27-50 (242)
462 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.4 0.015 3.2E-07 44.9 2.9 22 183-204 4-25 (166)
463 PRK13539 cytochrome c biogenes 95.3 0.015 3.2E-07 47.0 3.1 24 181-204 28-51 (207)
464 PRK13231 nitrogenase reductase 95.3 0.014 3.1E-07 48.9 3.1 24 182-205 3-26 (264)
465 cd01858 NGP_1 NGP-1. Autoanti 95.3 0.038 8.2E-07 42.4 5.2 26 181-206 102-127 (157)
466 cd00157 Rho Rho (Ras homology) 95.3 0.014 3.1E-07 45.0 2.9 22 184-205 3-24 (171)
467 cd03246 ABCC_Protease_Secretio 95.3 0.015 3.4E-07 45.4 3.1 24 181-204 28-51 (173)
468 TIGR01978 sufC FeS assembly AT 95.3 0.014 3E-07 48.2 3.0 24 181-204 26-49 (243)
469 cd04177 RSR1 RSR1 subgroup. R 95.3 0.014 3.1E-07 45.1 2.9 21 184-204 4-24 (168)
470 PRK14247 phosphate ABC transpo 95.3 0.014 3.1E-07 48.5 3.0 24 181-204 29-52 (250)
471 cd03232 ABC_PDR_domain2 The pl 95.3 0.015 3.2E-07 46.4 3.0 24 181-204 33-56 (192)
472 cd03268 ABC_BcrA_bacitracin_re 95.3 0.015 3.2E-07 46.9 3.0 24 181-204 26-49 (208)
473 PRK11247 ssuB aliphatic sulfon 95.3 0.015 3.2E-07 48.7 3.0 24 181-204 38-61 (257)
474 cd03266 ABC_NatA_sodium_export 95.3 0.015 3.2E-07 47.3 3.0 24 181-204 31-54 (218)
475 cd04137 RheB Rheb (Ras Homolog 95.3 0.014 3E-07 45.6 2.8 22 183-204 3-24 (180)
476 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.016 3.4E-07 44.0 2.9 25 181-205 26-50 (144)
477 PRK14532 adenylate kinase; Pro 95.3 0.013 2.8E-07 46.5 2.6 21 184-204 3-23 (188)
478 PRK05537 bifunctional sulfate 95.3 0.031 6.8E-07 52.1 5.5 48 154-205 369-416 (568)
479 cd04162 Arl9_Arfrp2_like Arl9/ 95.3 0.015 3.2E-07 45.0 2.9 21 184-204 2-22 (164)
480 cd00544 CobU Adenosylcobinamid 95.3 0.068 1.5E-06 41.7 6.6 45 184-233 2-46 (169)
481 cd03262 ABC_HisP_GlnQ_permease 95.3 0.015 3.3E-07 47.0 3.0 24 181-204 26-49 (213)
482 PHA02530 pseT polynucleotide k 95.3 0.015 3.2E-07 49.7 3.1 23 182-204 3-25 (300)
483 cd04115 Rab33B_Rab33A Rab33B/R 95.3 0.015 3.3E-07 45.1 2.9 23 182-204 3-25 (170)
484 PF02374 ArsA_ATPase: Anion-tr 95.3 0.014 3.1E-07 50.1 2.9 21 182-202 2-22 (305)
485 PRK07471 DNA polymerase III su 95.3 0.035 7.6E-07 48.9 5.4 45 154-203 19-63 (365)
486 TIGR02324 CP_lyasePhnL phospho 95.3 0.016 3.4E-07 47.4 3.0 24 181-204 34-57 (224)
487 PRK14242 phosphate transporter 95.3 0.015 3.4E-07 48.4 3.1 23 181-203 32-54 (253)
488 PF07724 AAA_2: AAA domain (Cd 95.3 0.02 4.3E-07 44.9 3.4 40 181-221 3-43 (171)
489 cd04161 Arl2l1_Arl13_like Arl2 95.3 0.016 3.5E-07 44.9 2.9 21 184-204 2-22 (167)
490 cd03223 ABCD_peroxisomal_ALDP 95.3 0.017 3.6E-07 44.9 3.0 25 181-205 27-51 (166)
491 cd03252 ABCC_Hemolysin The ABC 95.3 0.016 3.4E-07 47.8 3.0 24 181-204 28-51 (237)
492 TIGR00101 ureG urease accessor 95.2 0.018 3.9E-07 46.3 3.2 23 182-204 2-24 (199)
493 TIGR00416 sms DNA repair prote 95.2 0.073 1.6E-06 48.3 7.5 40 180-220 93-132 (454)
494 PRK14245 phosphate ABC transpo 95.2 0.016 3.5E-07 48.2 3.0 22 181-202 29-50 (250)
495 PRK07429 phosphoribulokinase; 95.2 0.021 4.5E-07 49.5 3.8 25 180-204 7-31 (327)
496 PRK09544 znuC high-affinity zi 95.2 0.016 3.5E-07 48.3 3.0 24 181-204 30-53 (251)
497 PRK14250 phosphate ABC transpo 95.2 0.016 3.5E-07 47.9 3.0 24 181-204 29-52 (241)
498 TIGR00972 3a0107s01c2 phosphat 95.2 0.016 3.5E-07 48.1 3.0 24 181-204 27-50 (247)
499 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.2 0.029 6.3E-07 43.7 4.4 24 181-204 15-38 (174)
500 cd03214 ABC_Iron-Siderophores_ 95.2 0.017 3.7E-07 45.5 3.0 24 181-204 25-48 (180)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=6.3e-30 Score=242.61 Aligned_cols=249 Identities=25% Similarity=0.322 Sum_probs=186.5
Q ss_pred HHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHhhccCCcc
Q 045226 4 QLLKLAGQEGVRAKLKKWEETLKTIEAVLIDAEEKQLSDRAVKLWLDDLRDLAYDAEDILDEFAAEAGLRLLKKHEASSS 83 (266)
Q Consensus 4 ~~~e~~~~~~v~~~~~~L~~~L~~i~~~l~~ae~~~~~~~~~~~Wl~~lr~~aydaeD~lD~~~~~~~~~~~~~~~~~~~ 83 (266)
+-+++..+.+.++.+..|+++|..++.++++++.++.....+..|.+.+++++|++||+++.|.......+....-...+
T Consensus 16 l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~ 95 (889)
T KOG4658|consen 16 LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRS 95 (889)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhH
Confidence 34577888899999999999999999999999999999999999999999999999999999998876554222111111
Q ss_pred cccccccccCCCCccchhcchhHHHHHHHHHHHHHHHHhhhhcCcccccCCCcccccccCCCCCCCCCCCCccccchhhH
Q 045226 84 TFRSLIQGFSSGASSIMAGISTRSKMEEISSRLEELCERRTDLGLEKIAGGSAHTAAVRQRPPTTCLTSEPAVYGRDTEK 163 (266)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~ 163 (266)
...+..|. ..+.+..+..+..+..++..+.+....++..................++.+..+... ||.+..+
T Consensus 96 ~~~~~~c~-------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~ 167 (889)
T KOG4658|consen 96 VERQRLCL-------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETML 167 (889)
T ss_pred HHHHHHhh-------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHH
Confidence 12222221 123445555556666666666666655543321111110000111122333333444 9999999
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcccc-ccC-CCceEEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 045226 164 ARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKR-VED-FKPKAWVCVSDDFDVLRISKAILESITLSSCD 241 (266)
Q Consensus 164 ~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~-~~~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~ 241 (266)
++++++|+.++ ..++||+||||+||||||+.+||+.. ++. ||.++||+||+.|+...++.+|+..++.....
T Consensus 168 ~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~ 241 (889)
T KOG4658|consen 168 EKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEE 241 (889)
T ss_pred HHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcc
Confidence 99999999876 38999999999999999999999998 889 99999999999999999999999999875442
Q ss_pred --CCChHHHHHHHHHHcCCceEEEEeC
Q 045226 242 --LKDLNSVQLKLKEALLKKKFFDCLG 266 (266)
Q Consensus 242 --~~~~~~~~~~l~~~L~~kr~LiVLD 266 (266)
..+.++++..|.++|.+||||||||
T Consensus 242 ~~~~~~~~~~~~i~~~L~~krfllvLD 268 (889)
T KOG4658|consen 242 WEDKEEDELASKLLNLLEGKRFLLVLD 268 (889)
T ss_pred cchhhHHHHHHHHHHHhccCceEEEEe
Confidence 2334789999999999999999998
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.79 E-value=6e-19 Score=150.03 Aligned_cols=104 Identities=37% Similarity=0.591 Sum_probs=91.7
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHHHHHhcC
Q 045226 159 RDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAILESITL 237 (266)
Q Consensus 159 r~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~il~~l~~ 237 (266)
||.++++|.++|.... .+.++|+|+||||+||||||..+|++..++. |+.++||+++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 6889999999999743 2589999999999999999999999987888 9999999999999999999999999987
Q ss_pred CCC---CCCChHHHHHHHHHHcCCceEEEEeC
Q 045226 238 SSC---DLKDLNSVQLKLKEALLKKKFFDCLG 266 (266)
Q Consensus 238 ~~~---~~~~~~~~~~~l~~~L~~kr~LiVLD 266 (266)
... ...+.+++...|.+.|.++++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlD 108 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLD 108 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEE
T ss_pred cccccccccccccccccchhhhccccceeeee
Confidence 743 34678889999999999999999998
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.42 E-value=8.5e-13 Score=131.31 Aligned_cols=106 Identities=19% Similarity=0.347 Sum_probs=76.0
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEe---cCC-----
Q 045226 151 TSEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCV---SDD----- 221 (266)
Q Consensus 151 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~v---s~~----- 221 (266)
.+...+||++..++++..+|.-.. ..+++|+||||||+||||||+.+|+. +.. |+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcc
Confidence 345679999999999999986432 35899999999999999999999997 667 998888742 211
Q ss_pred ------CC-HHHHHHHHHHHhcCCCC-CCCChHHHHHHHHHHcCCceEEEEeC
Q 045226 222 ------FD-VLRISKAILESITLSSC-DLKDLNSVQLKLKEALLKKKFFDCLG 266 (266)
Q Consensus 222 ------~~-~~~i~~~il~~l~~~~~-~~~~~~~~~~~l~~~L~~kr~LiVLD 266 (266)
++ ...+++.++.++..... .... ...+++.|.+||+|||||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLD 303 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFID 303 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEe
Confidence 11 12355566665543221 1111 145788899999999998
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.01 E-value=3.8e-09 Score=93.94 Aligned_cols=113 Identities=13% Similarity=0.051 Sum_probs=82.3
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHH
Q 045226 152 SEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKA 230 (266)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~ 230 (266)
.+..++||+++++.|...|...-. +.....+-|+|++|+|||++++.++++..... .-..++|+.....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999999854221 12234567999999999999999998743332 234566777777788899999
Q ss_pred HHHHhcCCCC--CCCChHHHHHHHHHHcC--CceEEEEeC
Q 045226 231 ILESITLSSC--DLKDLNSVQLKLKEALL--KKKFFDCLG 266 (266)
Q Consensus 231 il~~l~~~~~--~~~~~~~~~~~l~~~L~--~kr~LiVLD 266 (266)
|+.++..... ...+.+++...+.+.+. ++..+||||
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviD 145 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALD 145 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 9999976222 22356677777888775 456889998
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.98 E-value=5.4e-09 Score=91.99 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=79.2
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcccccc-C-C---CceEEEEecCCCCHHH
Q 045226 152 SEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVE-D-F---KPKAWVCVSDDFDVLR 226 (266)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~-~-F---~~~~wv~vs~~~~~~~ 226 (266)
.+..++||+.+.+.|..+|...-. +.....+-|+|++|+|||++++.++++.... . . -..+||+.....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999875211 1234578999999999999999999873211 1 1 1356777777777888
Q ss_pred HHHHHHHHhc---CCCC-CCCChHHHHHHHHHHcC--CceEEEEeC
Q 045226 227 ISKAILESIT---LSSC-DLKDLNSVQLKLKEALL--KKKFFDCLG 266 (266)
Q Consensus 227 i~~~il~~l~---~~~~-~~~~~~~~~~~l~~~L~--~kr~LiVLD 266 (266)
++..|++++. ...+ ...+..++...+.+.+. ++.++||||
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvID 136 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLD 136 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 9999999984 2211 12244556666666663 567899998
No 6
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.91 E-value=2e-09 Score=89.17 Aligned_cols=86 Identities=21% Similarity=0.083 Sum_probs=60.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCC--CCHHHHHHHHHHHhcCCCCCCCCh------HHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDD--FDVLRISKAILESITLSSCDLKDL------NSVQLKL 252 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~il~~l~~~~~~~~~~------~~~~~~l 252 (266)
-..++|+|++|+|||||++.+|++.....|+.++||.+++. +++.++++.|...+-....+.... .......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999864334999999998877 899999999844332221111111 1222233
Q ss_pred HHH-cCCceEEEEeC
Q 045226 253 KEA-LLKKKFFDCLG 266 (266)
Q Consensus 253 ~~~-L~~kr~LiVLD 266 (266)
..+ -.+++.+|++|
T Consensus 96 ~~~~~~G~~vll~iD 110 (249)
T cd01128 96 KRLVEHGKDVVILLD 110 (249)
T ss_pred HHHHHCCCCEEEEEE
Confidence 322 35899999998
No 7
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.81 E-value=1.1e-08 Score=88.90 Aligned_cols=97 Identities=20% Similarity=0.148 Sum_probs=63.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCC--CHHHHHHHHHHHhcCCCCCC
Q 045226 165 RVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDF--DVLRISKAILESITLSSCDL 242 (266)
Q Consensus 165 ~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~il~~l~~~~~~~ 242 (266)
.+++++..-. .-....|+|++|+||||||+.||++.....|++++||.+++.+ .+.++++.|+-.+-....+.
T Consensus 158 rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~ 232 (416)
T PRK09376 158 RIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDE 232 (416)
T ss_pred eeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCC
Confidence 4566665432 2467899999999999999999998654449999999999998 77778887763221111111
Q ss_pred CChH------HHHHHHHHH-cCCceEEEEeC
Q 045226 243 KDLN------SVQLKLKEA-LLKKKFFDCLG 266 (266)
Q Consensus 243 ~~~~------~~~~~l~~~-L~~kr~LiVLD 266 (266)
.... ...+.-... -.+++.||++|
T Consensus 233 ~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iD 263 (416)
T PRK09376 233 PAERHVQVAEMVIEKAKRLVEHGKDVVILLD 263 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 1111 111111221 36899999998
No 8
>PTZ00202 tuzin; Provisional
Probab=98.76 E-value=2.6e-07 Score=81.21 Aligned_cols=106 Identities=14% Similarity=0.203 Sum_probs=73.1
Q ss_pred CCCCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHH
Q 045226 148 TCLTSEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRI 227 (266)
Q Consensus 148 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i 227 (266)
..+.+...++||+.+...|...|...+. ....++.|+|++|+|||||++.+..... ..+++.-+. +..++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr--g~eEl 325 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR--GTEDT 325 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC--CHHHH
Confidence 3445667899999999999999875432 2346999999999999999999996632 113332223 67999
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHc-----C-CceEEEEe
Q 045226 228 SKAILESITLSSCDLKDLNSVQLKLKEAL-----L-KKKFFDCL 265 (266)
Q Consensus 228 ~~~il~~l~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LiVL 265 (266)
++.|+.+|+.+.. ....++...|.+.| . +++-+||+
T Consensus 326 Lr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 326 LRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999999997432 22233444444443 3 67777765
No 9
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.68 E-value=2.8e-08 Score=74.24 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=64.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccC----CCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVED----FKPKAWVCVSDDFDVLRISKAILESITLSSCDLKDLNSVQLKLKEAL 256 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~l~~~L 256 (266)
-+++.|+|..|+|||++++.+.+...... -...+|++++...+...+...|+++++.......+.+++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 47899999999999999999998742110 13457999888889999999999999977655467778888888888
Q ss_pred CCce-EEEEeC
Q 045226 257 LKKK-FFDCLG 266 (266)
Q Consensus 257 ~~kr-~LiVLD 266 (266)
...+ .+||||
T Consensus 84 ~~~~~~~lviD 94 (131)
T PF13401_consen 84 DRRRVVLLVID 94 (131)
T ss_dssp HHCTEEEEEEE
T ss_pred HhcCCeEEEEe
Confidence 6654 488887
No 10
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.64 E-value=1.6e-07 Score=82.09 Aligned_cols=86 Identities=20% Similarity=0.098 Sum_probs=60.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCC--CCHHHHHHHHHHHhcCCCCCCCCh------HHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDD--FDVLRISKAILESITLSSCDLKDL------NSVQLKL 252 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~il~~l~~~~~~~~~~------~~~~~~l 252 (266)
-..++|+|++|+|||||++.+++....+.|+..+||.+++. .++.++++.|+..+-....+.... ....+..
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 46899999999999999999999854333999999999976 789999999865433222221111 1122222
Q ss_pred HHH-cCCceEEEEeC
Q 045226 253 KEA-LLKKKFFDCLG 266 (266)
Q Consensus 253 ~~~-L~~kr~LiVLD 266 (266)
... -++++.+|++|
T Consensus 248 e~~~~~GkdVVLlID 262 (415)
T TIGR00767 248 KRLVEHKKDVVILLD 262 (415)
T ss_pred HHHHHcCCCeEEEEE
Confidence 222 36899999998
No 11
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.54 E-value=1.4e-06 Score=73.32 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=55.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-----
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSSCDLKDLNSVQLKLKEA----- 255 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~l~~~----- 255 (266)
..++.|+|+.|+|||||++.+++......+ ..+|+ +....+..+++..|+..++.+.. ..+...+...+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHH
Confidence 368999999999999999999987432221 12333 33346778899999988876532 22333333333332
Q ss_pred cCCceEEEEeC
Q 045226 256 LLKKKFFDCLG 266 (266)
Q Consensus 256 L~~kr~LiVLD 266 (266)
..+++++||+|
T Consensus 120 ~~~~~~vliiD 130 (269)
T TIGR03015 120 AAGKRALLVVD 130 (269)
T ss_pred hCCCCeEEEEE
Confidence 36788999987
No 12
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.52 E-value=1.7e-07 Score=74.18 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=43.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCC-----CCHHHHH
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDD-----FDVLRIS 228 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~-----~~~~~i~ 228 (266)
.++||+.+.+.+...|... .....+++.|+|.+|+|||+|.+.++....... + .+.+.+... .+...++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 75 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSAL 75 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHH
Confidence 4799999999999999521 233468999999999999999999998854443 3 333333332 1124555
Q ss_pred HHHHHHhc
Q 045226 229 KAILESIT 236 (266)
Q Consensus 229 ~~il~~l~ 236 (266)
++++.++.
T Consensus 76 ~~l~~~~~ 83 (185)
T PF13191_consen 76 RQLIDQLL 83 (185)
T ss_dssp HHHS----
T ss_pred HHHHHHhh
Confidence 55555543
No 13
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.4e-06 Score=76.27 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=84.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCc-eEEEEecCCCCHHHHHHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKP-KAWVCVSDDFDVLRISKAIL 232 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~il 232 (266)
..+.+|+.+.+++...|..--. +....-+-|.|..|+|||+.++.|....+...=.. .++|++-...+...++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 3489999999999988765321 11223388999999999999999999854332112 79999999999999999999
Q ss_pred HHhcCCCCCCCChHHHHHHHHHHcC--CceEEEEeC
Q 045226 233 ESITLSSCDLKDLNSVQLKLKEALL--KKKFFDCLG 266 (266)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~L~--~kr~LiVLD 266 (266)
++++..........+....+.+.+. ++.++||||
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLD 130 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILD 130 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEc
Confidence 9997544444556667777777774 478999998
No 14
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.40 E-value=3.6e-07 Score=74.79 Aligned_cols=60 Identities=22% Similarity=0.407 Sum_probs=42.2
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCC
Q 045226 156 VYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDF 222 (266)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~ 222 (266)
++||+.+++.|.+++..+. ...+.|+|+.|+|||+|++.+.+..+...+ ..+|+......
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-~~~y~~~~~~~ 60 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINELKEKGY-KVVYIDFLEES 60 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT--EE-CCCHHCCTTBS
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHHhhhcCC-cEEEEecccch
Confidence 6899999999999998754 478999999999999999999987421113 44445444443
No 15
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.36 E-value=2.4e-06 Score=75.88 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=56.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISK 229 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~ 229 (266)
.++++.+...+.++..|... +.|.++|++|+|||++|+.+++...... |+.+.||++++.++..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 45788899999999998753 4677899999999999999998765556 88999999999988766543
No 16
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=4.3e-06 Score=62.89 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=43.7
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCC
Q 045226 157 YGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFD 223 (266)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~ 223 (266)
+|++.....+...+.... ...+.|+|+.|+|||+|++.+++... . -...+++..+....
T Consensus 1 ~~~~~~~~~i~~~~~~~~------~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 1 VGQEEAIEALREALELPP------PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLE 60 (151)
T ss_pred CchHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhh
Confidence 367778888888876543 46788999999999999999998742 2 34556676655444
No 17
>PRK08118 topology modulation protein; Reviewed
Probab=98.23 E-value=5.7e-07 Score=70.28 Aligned_cols=50 Identities=24% Similarity=0.512 Sum_probs=35.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccC--CCceE----EEEecCCCCHHHHHHHHH
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVED--FKPKA----WVCVSDDFDVLRISKAIL 232 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~--F~~~~----wv~vs~~~~~~~i~~~il 232 (266)
..|.|+|++|+||||||+.+++...... ||..+ |+.+++. ....++++++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~ 57 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE-EQITVQNELV 57 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH-HHHHHHHHHh
Confidence 3589999999999999999999876653 88888 4445442 3333444444
No 18
>PF05729 NACHT: NACHT domain
Probab=98.22 E-value=2.8e-06 Score=65.74 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=46.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccC-C----CceEEEEecCCCCHH---HHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVED-F----KPKAWVCVSDDFDVL---RISKAILESITLSSCDLKDLNSVQLKLK 253 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F----~~~~wv~vs~~~~~~---~i~~~il~~l~~~~~~~~~~~~~~~~l~ 253 (266)
+++.|+|.+|+||||+++.+........ . ...+|++........ .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 4789999999999999999988754443 3 345666655443322 33333333333211 11111 222
Q ss_pred HH-cCCceEEEEeC
Q 045226 254 EA-LLKKKFFDCLG 266 (266)
Q Consensus 254 ~~-L~~kr~LiVLD 266 (266)
.. ...++++||||
T Consensus 75 ~~~~~~~~~llilD 88 (166)
T PF05729_consen 75 ELLEKNKRVLLILD 88 (166)
T ss_pred HHHHcCCceEEEEe
Confidence 22 25689999998
No 19
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.21 E-value=1.2e-05 Score=76.38 Aligned_cols=114 Identities=11% Similarity=0.012 Sum_probs=75.4
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccc---cC-CC--ceEEEEecCCCCHH
Q 045226 152 SEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRV---ED-FK--PKAWVCVSDDFDVL 225 (266)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~---~~-F~--~~~wv~vs~~~~~~ 225 (266)
.+..+.||+++++.|...|...-. +.....++-|.|++|+|||+.++.|...... +. .. ..++|+...-.+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 346789999999999998865221 1223467889999999999999999876421 12 33 24566666666788
Q ss_pred HHHHHHHHHhcCCCC-CCCChHHHHHHHHHHcCC---ceEEEEeC
Q 045226 226 RISKAILESITLSSC-DLKDLNSVQLKLKEALLK---KKFFDCLG 266 (266)
Q Consensus 226 ~i~~~il~~l~~~~~-~~~~~~~~~~~l~~~L~~---kr~LiVLD 266 (266)
.+...|.+++....+ ......+....+...+.. ...+||||
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILD 876 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIID 876 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEee
Confidence 889999998854432 223334455555555421 23588887
No 20
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.17 E-value=2.3e-05 Score=67.47 Aligned_cols=107 Identities=22% Similarity=0.305 Sum_probs=77.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHH
Q 045226 153 EPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAIL 232 (266)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 232 (266)
++.+.+|+.++..+..++.+.+. .-++.+-|.|-.|.|||.+.+.+++... -..+|+++-.+|+...++..|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n----~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN----LENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC----CcceeeehHHhccHHHHHHHHH
Confidence 45788999999999999876541 2345568899999999999999998852 3579999999999999999999
Q ss_pred HHhcCCCCC----CCChHHH---HHHHHH--HcC--CceEEEEeC
Q 045226 233 ESITLSSCD----LKDLNSV---QLKLKE--ALL--KKKFFDCLG 266 (266)
Q Consensus 233 ~~l~~~~~~----~~~~~~~---~~~l~~--~L~--~kr~LiVLD 266 (266)
.+.+....+ ..+.+.+ ...+.+ ... ++.++||||
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLD 122 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILD 122 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEc
Confidence 998632211 1112223 333333 222 458999998
No 21
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.13 E-value=9.2e-06 Score=69.73 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=39.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|++..++.|..++..... .......+-++|+.|+|||+||+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999998864211 11234567899999999999999999873
No 22
>PRK07261 topology modulation protein; Provisional
Probab=98.00 E-value=2e-05 Score=61.75 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=35.2
Q ss_pred EEEEEecCCCcHHHHHHHHHccccccC--CCceEEEEecCCCCHHHHHHHHHHHh
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDKRVED--FKPKAWVCVSDDFDVLRISKAILESI 235 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~~~~~--F~~~~wv~vs~~~~~~~i~~~il~~l 235 (266)
.|.|+|++|+||||||+.+.....+.. .|...|-......+..++...+...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence 489999999999999999886644433 56666754434444445544444433
No 23
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.99 E-value=2.3e-05 Score=68.00 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=39.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|++..++.+..++..... .+.....+-|+|++|+||||||+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 5799999999998888764211 12235677899999999999999999874
No 24
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=8.1e-05 Score=65.73 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=77.5
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHH
Q 045226 151 TSEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISK 229 (266)
Q Consensus 151 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~ 229 (266)
..+..++||+.+++.+.+|+...- +....+.+=|.|.+|.|||.+...|+.+..-.. =-++++++.-.-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 355689999999999999987633 133456788899999999999999999843222 12446666555456778888
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHHcCCc--eEEEEeC
Q 045226 230 AILESITLSSCDLKDLNSVQLKLKEALLKK--KFFDCLG 266 (266)
Q Consensus 230 ~il~~l~~~~~~~~~~~~~~~~l~~~L~~k--r~LiVLD 266 (266)
.|...+...........+.++.+..+..+. -||||||
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlD 263 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLD 263 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEec
Confidence 888877222111112245666666776554 4888887
No 25
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.96 E-value=0.00014 Score=61.39 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=74.3
Q ss_pred ccccch---hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC---C--CceEEEEecCCCCHHH
Q 045226 155 AVYGRD---TEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED---F--KPKAWVCVSDDFDVLR 226 (266)
Q Consensus 155 ~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~---F--~~~~wv~vs~~~~~~~ 226 (266)
..+|.. .-.+.+.++|..+. .....-+.|||..|.|||++++.......... - -+++.|.+...++...
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 455553 33455555555433 34456799999999999999999886542221 1 2567788889999999
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHcCC-ceEEEEeC
Q 045226 227 ISKAILESITLSSCDLKDLNSVQLKLKEALLK-KKFFDCLG 266 (266)
Q Consensus 227 i~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~-kr~LiVLD 266 (266)
+...|+++++.+.....+...+...+...|+. +-=+||+|
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIID 152 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIID 152 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 99999999998876666666666666566643 22344444
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.95 E-value=8.7e-05 Score=72.97 Aligned_cols=92 Identities=18% Similarity=0.310 Sum_probs=61.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEec-CCCCHHHHHHHHHHHhcCCCCC--
Q 045226 165 RVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVS-DDFDVLRISKAILESITLSSCD-- 241 (266)
Q Consensus 165 ~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~il~~l~~~~~~-- 241 (266)
.|.+.|.... ..+++.|+|++|.|||||+...... ++.++|+++. .+-++..++..++..+......
T Consensus 21 rl~~~l~~~~-----~~~~~~v~apaG~GKTtl~~~~~~~-----~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~ 90 (903)
T PRK04841 21 RLLAKLSGAN-----NYRLVLVTSPAGYGKTTLISQWAAG-----KNNLGWYSLDESDNQPERFASYLIAALQQATNGHC 90 (903)
T ss_pred HHHHHHhccc-----CCCeEEEECCCCCCHHHHHHHHHHh-----CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCccc
Confidence 5666664332 4789999999999999999998854 5579999996 4456677778888777422111
Q ss_pred -----------CCChHHHHHHHHHHcC--CceEEEEeC
Q 045226 242 -----------LKDLNSVQLKLKEALL--KKKFFDCLG 266 (266)
Q Consensus 242 -----------~~~~~~~~~~l~~~L~--~kr~LiVLD 266 (266)
..+...+...+-..|. +.+++||||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlD 128 (903)
T PRK04841 91 SKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVID 128 (903)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0222333333333443 578999998
No 27
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.92 E-value=2.6e-05 Score=69.91 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=34.6
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKAR---VLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..+.. |.+++.... ...+-++|++|+||||||+.+.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~------~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR------LSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC------CceEEEECCCCCCHHHHHHHHHHH
Confidence 367888766544 666665443 457788999999999999999886
No 28
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.91 E-value=7.3e-05 Score=60.45 Aligned_cols=106 Identities=21% Similarity=0.207 Sum_probs=54.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILE 233 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 233 (266)
.+++|.+.-+..+.-++..... .+..+.-+-.||++|+||||||..+.+..... |. +.+.+ ...-..=+..++.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~-~~---~~sg~-~i~k~~dl~~il~ 97 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANELGVN-FK---ITSGP-AIEKAGDLAAILT 97 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHCT---EE---EEECC-C--SCHHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhccCCC-eE---eccch-hhhhHHHHHHHHH
Confidence 5799988777766544432110 12347889999999999999999999983322 42 22221 1111122344555
Q ss_pred HhcCCCC---C-CCC-hHHHHHHHHHHcCCceEEEEe
Q 045226 234 SITLSSC---D-LKD-LNSVQLKLKEALLKKKFFDCL 265 (266)
Q Consensus 234 ~l~~~~~---~-~~~-~~~~~~~l~~~L~~kr~LiVL 265 (266)
.+..... + ..- ....++.|..++.+-+.-||+
T Consensus 98 ~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiii 134 (233)
T PF05496_consen 98 NLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIII 134 (233)
T ss_dssp T--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEB
T ss_pred hcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEe
Confidence 5543211 1 111 234667777777776665554
No 29
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.90 E-value=5.4e-05 Score=65.67 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++...-.||++|+||||||+.+...
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh
Confidence 4788889999999999999999986
No 30
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.81 E-value=7.5e-05 Score=64.08 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=39.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESIT 236 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~ 236 (266)
+..+-.||++|+||||||+.+.+..+... ..+|..|....-..=+++|+++..
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~t~dvR~ife~aq 214 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAKTNDVRDIFEQAQ 214 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccchHHHHHHHHHHH
Confidence 78888999999999999999998755433 457777766554444566666543
No 31
>PRK04195 replication factor C large subunit; Provisional
Probab=97.78 E-value=0.00011 Score=67.26 Aligned_cols=49 Identities=27% Similarity=0.377 Sum_probs=40.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.+.+|+..... +...+.+-|+|+.|+||||+|+.+.+.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999875321 222678999999999999999999987
No 32
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.76 E-value=0.00011 Score=54.43 Aligned_cols=38 Identities=32% Similarity=0.311 Sum_probs=27.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD 220 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~ 220 (266)
..+.|+|+.|+||||+++.+....... ....++++.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEE
Confidence 578999999999999999998873211 22355555444
No 33
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.72 E-value=3.7e-05 Score=66.61 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=41.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
+++|.++.++++++++.......+..-+++.++|+.|+||||||..+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999976432113346899999999999999999998764
No 34
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.62 E-value=4.7e-05 Score=55.85 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
||.|+|++|+||||+|+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999886
No 35
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.62 E-value=8.5e-05 Score=61.02 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=29.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEe
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCV 218 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~v 218 (266)
.-.++|+|..|.|||||...+... ... |.++.+++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 357899999999999999999877 566 977776654
No 36
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.61 E-value=0.00027 Score=67.83 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=64.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc---cccC-C-CceEEE-Eec-----CCC
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK---RVED-F-KPKAWV-CVS-----DDF 222 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~---~~~~-F-~~~~wv-~vs-----~~~ 222 (266)
+.++||+.+++.+++.|.... ..-+-++|++|+|||+||+.+.... .+.. + ++.+|. +++ ..+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~ 255 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKY 255 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccc
Confidence 468999999999999997654 2345699999999999999988763 2222 2 455654 211 111
Q ss_pred --CHHHHHHHHHHHhcCCCC----------------CCCChHHHHHHHHHHcCCceEEEE
Q 045226 223 --DVLRISKAILESITLSSC----------------DLKDLNSVQLKLKEALLKKKFFDC 264 (266)
Q Consensus 223 --~~~~i~~~il~~l~~~~~----------------~~~~~~~~~~~l~~~L~~kr~LiV 264 (266)
..+.-++.+++.+..... ......+.++.|+..|....+.+|
T Consensus 256 ~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~I 315 (731)
T TIGR02639 256 RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCI 315 (731)
T ss_pred cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEE
Confidence 334455666665432110 011122356777788766554443
No 37
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.60 E-value=0.00024 Score=69.07 Aligned_cols=46 Identities=28% Similarity=0.460 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..++||+.+++.++++|..... .-+-++|++|+|||+||..+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987542 344599999999999999887753
No 38
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.59 E-value=0.00055 Score=59.73 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=62.7
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCc-eEEEEecCC-CCHHHHHHHHHHHhcCCC
Q 045226 162 EKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKP-KAWVCVSDD-FDVLRISKAILESITLSS 239 (266)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~-~~wv~vs~~-~~~~~i~~~il~~l~~~~ 239 (266)
-...+++.+..-. ....+.|+|..|+|||||++.+.+......=+. ++|+.+.+. ..+.++++.+...+....
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 3455888887533 135679999999999999999888632221133 477777765 466778888877666543
Q ss_pred CCCCChHH-----HHHHHHHHc--CCceEEEEeC
Q 045226 240 CDLKDLNS-----VQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 240 ~~~~~~~~-----~~~~l~~~L--~~kr~LiVLD 266 (266)
.+...... ....+-+++ ++++.+||+|
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlD 227 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLD 227 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 22211111 111222222 6899999998
No 39
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.58 E-value=0.00053 Score=64.41 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=44.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CC---ceEEEEec
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FK---PKAWVCVS 219 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~---~~~wv~vs 219 (266)
++++|.+..+..+.+.+.... ...+.|+|+.|+||||||+.+++...... +. ..-||.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 368899988888887775332 45799999999999999999998754333 32 34566654
No 40
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.56 E-value=0.00041 Score=57.13 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcccccc----C-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC---------CCCCh
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVE----D-FKPKAWVCVSDDFDVLRISKAILESITLSSC---------DLKDL 245 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~----~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~---------~~~~~ 245 (266)
.-.++.|+|.+|+|||+||.++.-..... . ...++|++....++...+ .++++..+.... ...+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 46899999999999999999886432222 1 368899998888876554 334444332211 11233
Q ss_pred HH---HHHHHHHHc-CC-ceEEEEeC
Q 045226 246 NS---VQLKLKEAL-LK-KKFFDCLG 266 (266)
Q Consensus 246 ~~---~~~~l~~~L-~~-kr~LiVLD 266 (266)
++ +...+.+.+ +. +--|||+|
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVID 122 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVD 122 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEe
Confidence 33 334444444 33 56788887
No 41
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.53 E-value=0.00028 Score=57.02 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHHHHHh----cCCC--CCCCChH---HH
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAILESI----TLSS--CDLKDLN---SV 248 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~il~~l----~~~~--~~~~~~~---~~ 248 (266)
+.-.++-|+|++|+|||+|+.++.... .. ...++||+... ++...+.+ +++.. ...- ....+.. ..
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 346899999999999999998877652 23 56789999876 66655443 33322 0000 0112222 33
Q ss_pred HHHHHHHcCC-ceEEEEeC
Q 045226 249 QLKLKEALLK-KKFFDCLG 266 (266)
Q Consensus 249 ~~~l~~~L~~-kr~LiVLD 266 (266)
...+.+.+.. +--+||+|
T Consensus 86 ~~~l~~~~~~~~~~lvVID 104 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVD 104 (209)
T ss_pred HHHHHHHHhhcCccEEEEe
Confidence 5555555543 44577877
No 42
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.49 E-value=0.00044 Score=58.69 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=45.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcccccc-CCCceEEEEecCCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVE-DFKPKAWVCVSDDFD--VLRISKAILESITLSSCDLKDLNSVQLKLKEAL 256 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~-~F~~~~wv~vs~~~~--~~~i~~~il~~l~~~~~~~~~~~~~~~~l~~~L 256 (266)
...+|+|+|+.|+||||++..+......+ .-..+..|+.. .+. ..+-+....+.++.+.....+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D-~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD-TYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC-ccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 45799999999999999998887653322 11123334432 222 23333333333443322334555565555543
Q ss_pred CCceEEEEeC
Q 045226 257 LKKKFFDCLG 266 (266)
Q Consensus 257 ~~kr~LiVLD 266 (266)
.+.. +|++|
T Consensus 271 ~~~d-~vliD 279 (282)
T TIGR03499 271 RDKD-LILID 279 (282)
T ss_pred cCCC-EEEEe
Confidence 4444 55555
No 43
>PRK06696 uridine kinase; Validated
Probab=97.49 E-value=0.00016 Score=59.16 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=33.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 159 RDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 159 r~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
|..-+++|.+++.... .....+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4556677888776532 234789999999999999999999876
No 44
>PF13173 AAA_14: AAA domain
Probab=97.47 E-value=0.00026 Score=52.66 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=29.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCC
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDF 222 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~ 222 (266)
+++.|.|+-|+|||||+++++.+.. .....++++.....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPR 41 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHH
Confidence 6899999999999999999987632 12456677665543
No 45
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.41 E-value=0.0013 Score=53.73 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=54.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCC------CceEEEEecCCCCHHHHHHHHHHHhcCCC---------CCCCC
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDF------KPKAWVCVSDDFDVLRISKAILESITLSS---------CDLKD 244 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F------~~~~wv~vs~~~~~~~i~~~il~~l~~~~---------~~~~~ 244 (266)
.-.++.|+|.+|+|||+||..+....... - ..++|+.....++...+. .+........ ....+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~-~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLP-GELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcc-cccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 45799999999999999999876542111 3 567899988888765543 4444322210 02245
Q ss_pred hHHHHHHHHHHcC----CceEEEEeC
Q 045226 245 LNSVQLKLKEALL----KKKFFDCLG 266 (266)
Q Consensus 245 ~~~~~~~l~~~L~----~kr~LiVLD 266 (266)
.+++...+...+. .+--|||+|
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVID 121 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVD 121 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEc
Confidence 6666666666653 344588887
No 46
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=6.8e-05 Score=68.55 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|-+..++.|.+++..+.. ...+-++|+.|+||||+|+.+.+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l-----~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL-----GHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999888888888876542 4678999999999999999987764
No 47
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.41 E-value=0.00044 Score=56.64 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=49.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHH----hcCCC--CCCCChHH---HHH
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILES----ITLSS--CDLKDLNS---VQL 250 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~----l~~~~--~~~~~~~~---~~~ 250 (266)
.-.++-|+|.+|+|||+||.++..... ..-..++||+.. .++...+ .+++.. +.... ....+.++ ..+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~-~~~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA-KNGKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 468999999999999999988876531 114677899887 5665543 233322 10000 01223333 333
Q ss_pred HHHHHcCCceEEEEeC
Q 045226 251 KLKEALLKKKFFDCLG 266 (266)
Q Consensus 251 ~l~~~L~~kr~LiVLD 266 (266)
.+...+..+--+||+|
T Consensus 99 ~~~~~~~~~~~lvVID 114 (225)
T PRK09361 99 KAEKLAKENVGLIVLD 114 (225)
T ss_pred HHHHHHHhcccEEEEe
Confidence 4444444566678887
No 48
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.41 E-value=0.00021 Score=56.21 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=27.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEE
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWV 216 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv 216 (266)
...+|.++|+.|+||||+|+.++... .. +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l--~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL--KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEE
Confidence 35699999999999999999999773 33 4444554
No 49
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.41 E-value=0.00028 Score=67.20 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=34.4
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKA---RVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..+. .+.+.+..+. +..+-++|++|+||||||+.+++..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~------~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR------VGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHh
Confidence 46888877664 4555554432 5567899999999999999999873
No 50
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.34 E-value=0.00016 Score=57.95 Aligned_cols=24 Identities=46% Similarity=0.578 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++||.+||+.|+||||.+-++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~ 24 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR 24 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH
Confidence 379999999999999988776554
No 51
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.34 E-value=0.001 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|+|.|..|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0021 Score=55.48 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=54.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc----cccC-CCceEEEE-ecCCCCHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK----RVED-FKPKAWVC-VSDDFDVLRI 227 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~----~~~~-F~~~~wv~-vs~~~~~~~i 227 (266)
.+++|-+..++.+.+++..+.- ....-++|+.|+||||||+.++... .... +|...|.. -+.......
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~-----~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF-----SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-----CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 3678988889999999876542 5688999999999999999887742 1223 56666655 344455555
Q ss_pred HHHHHHHhcC
Q 045226 228 SKAILESITL 237 (266)
Q Consensus 228 ~~~il~~l~~ 237 (266)
.+++.+.+..
T Consensus 78 ir~~~~~~~~ 87 (313)
T PRK05564 78 IRNIIEEVNK 87 (313)
T ss_pred HHHHHHHHhc
Confidence 4556665543
No 53
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0019 Score=56.89 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+.++|+++|++|+||||++..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999999988653
No 54
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.27 E-value=0.0012 Score=64.57 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++||+.++..+++.|.... ..-+-++|++|+|||+||..+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999997754 234458999999999999988776
No 55
>PLN03025 replication factor C subunit; Provisional
Probab=97.27 E-value=0.0017 Score=56.25 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.++.+..|.+++..+. ..-+-++|+.|+||||+|..+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~------~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN------MPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHH
Confidence 467898888888887776543 3335689999999999999998763
No 56
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.26 E-value=0.002 Score=57.73 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..++.++|..|+||||.|..+...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999997665443
No 57
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00023 Score=66.05 Aligned_cols=51 Identities=25% Similarity=0.433 Sum_probs=40.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+-+|.++-++.|++.|.-......-+-.+++.||++|||||+|++.|...
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a 373 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA 373 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH
Confidence 467899999999999985422112334579999999999999999999886
No 58
>PRK10867 signal recognition particle protein; Provisional
Probab=97.26 E-value=0.0017 Score=58.15 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=19.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
...+|.++|++|+||||++..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999996655543
No 59
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0017 Score=62.61 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=39.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|-+.-+..|.+++..+.- ...+-++|+.|+||||+|+.+.+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl-----~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRL-----HHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999876542 4567899999999999999988764
No 60
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00061 Score=54.91 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++.+|||.|.+|.||||+|+.++..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999987
No 61
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.24 E-value=0.0023 Score=54.35 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHc
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
...-+|+|.|..|+||||||+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999987643
No 62
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.23 E-value=0.0011 Score=54.07 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=31.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCC
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFD 223 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~ 223 (266)
.-.++-|.|.+|+||||||.++..... ..=..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~-~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA-GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEECCCCCH
Confidence 468999999999999999998876521 1134567887665554
No 63
>PRK07667 uridine kinase; Provisional
Probab=97.23 E-value=0.00051 Score=54.96 Aligned_cols=38 Identities=18% Similarity=0.396 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 163 KARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 163 ~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+.|.+.+.... ....+|+|.|.+|.||||||+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665433 23589999999999999999999875
No 64
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.22 E-value=0.0025 Score=52.38 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
....+++|.|+.|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999888753
No 65
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.22 E-value=0.00026 Score=64.80 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=39.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+++|.++.++.|++.|......-+..-+++.++|+.|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999994321101223579999999999999999999875
No 66
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0014 Score=57.45 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.++.++|+.|+||||++..+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999987653
No 67
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.21 E-value=0.00028 Score=56.46 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=43.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccccccCCCc---eEEEEecCCCCHHHHHHHHHHHhcC----CCCCCCChHHHHHHHHHH
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDKRVEDFKP---KAWVCVSDDFDVLRISKAILESITL----SSCDLKDLNSVQLKLKEA 255 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~---~~wv~vs~~~~~~~i~~~il~~l~~----~~~~~~~~~~~~~~l~~~ 255 (266)
||+|.|.+|+||||||+.+........+.+ ...++...-+....... .-..... ..+..-+.+.+.+.|...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHHHH
Confidence 799999999999999999988743222332 22222222222222111 1111111 112345677788888777
Q ss_pred cCCceE
Q 045226 256 LLKKKF 261 (266)
Q Consensus 256 L~~kr~ 261 (266)
..++..
T Consensus 80 ~~g~~i 85 (194)
T PF00485_consen 80 KNGGSI 85 (194)
T ss_dssp HTTSCE
T ss_pred hCCCcc
Confidence 666653
No 68
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.21 E-value=0.0017 Score=56.19 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccC-C----CceEEEEecCCCCHHHHHHHHHHHhcCCCC---------CCCCh
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVED-F----KPKAWVCVSDDFDVLRISKAILESITLSSC---------DLKDL 245 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F----~~~~wv~vs~~~~~~~i~~~il~~l~~~~~---------~~~~~ 245 (266)
...++-|+|++|+|||+|+.++.-...... + ..++||+....|++..+. ++++.++.... ...+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCCH
Confidence 468999999999999999988765432221 1 378999999988887754 45555543211 11122
Q ss_pred ---HHHHHHHHHHcCC--ceEEEEeC
Q 045226 246 ---NSVQLKLKEALLK--KKFFDCLG 266 (266)
Q Consensus 246 ---~~~~~~l~~~L~~--kr~LiVLD 266 (266)
..+...+...+.. +--|||+|
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVID 205 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVD 205 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEE
Confidence 2334455555543 33488887
No 69
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.20 E-value=0.00033 Score=56.67 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+|+|+|.+|+|||||++.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999876
No 70
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0019 Score=59.57 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+..+..|..++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999887654 2466789999999999999998763
No 71
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.0019 Score=57.93 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=20.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++.++|++|+||||++..+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999988776543
No 72
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.17 E-value=0.00037 Score=56.36 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|+|+.|+|||||++.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999865
No 73
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0026 Score=58.01 Aligned_cols=25 Identities=44% Similarity=0.453 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|+|++|+||||++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999887654
No 74
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.15 E-value=0.0013 Score=51.54 Aligned_cols=22 Identities=50% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999887764
No 75
>PTZ00301 uridine kinase; Provisional
Probab=97.13 E-value=0.00058 Score=55.31 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+|+|.|.+|.||||||+.+...
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHH
Confidence 3579999999999999999887654
No 76
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.0029 Score=59.15 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=39.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..+..|.+++..+.. ...+-++|+.|+||||+|+.+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl-----~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRL-----HHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999976542 468899999999999999988654
No 77
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.12 E-value=0.0016 Score=55.94 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=53.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHH
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKL 252 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l 252 (266)
+.-+++-|.|+.|+||||||.++.... .. -..++||...+.++.. .+++++.... ...+.++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 346899999999999999998876552 23 4567889887766653 3444443211 233456666666
Q ss_pred HHHcC-CceEEEEeC
Q 045226 253 KEALL-KKKFFDCLG 266 (266)
Q Consensus 253 ~~~L~-~kr~LiVLD 266 (266)
...++ +.--+||+|
T Consensus 126 ~~li~~~~~~lIVID 140 (321)
T TIGR02012 126 ETLVRSGAVDIIVVD 140 (321)
T ss_pred HHHhhccCCcEEEEc
Confidence 66553 345677877
No 78
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.0033 Score=59.62 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+++..+.- ...+-++|..|+||||+|+.+.+.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL-----~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRL-----HHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCC-----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999876542 456679999999999999876654
No 79
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.10 E-value=0.00056 Score=66.56 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=38.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..++||+.++..+++.|.... ..-+-++|.+|+||||||..+....
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999998765 2345599999999999999988753
No 80
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.10 E-value=0.00068 Score=58.47 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=39.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+...+.+..++..+. ...++-++|+.|+||||+|+.+++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 578999999999999987543 2568888999999999999999886
No 81
>PRK08233 hypothetical protein; Provisional
Probab=97.10 E-value=0.00045 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999998763
No 82
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.09 E-value=0.0008 Score=63.01 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=41.1
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 152 SEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.-.+++|-+..+.++..||..... ......++.|+|+.|+||||+++.+...
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999876432 1223468999999999999999999876
No 83
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0041 Score=58.00 Aligned_cols=52 Identities=23% Similarity=0.478 Sum_probs=42.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 153 EPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+.+-+|+++-++.|+++|--+.-.++.+-++++.+|++|||||.+|+.|...
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A 461 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA 461 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH
Confidence 3567899999999999985433223446789999999999999999999876
No 84
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.08 E-value=0.00082 Score=54.92 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC
Q 045226 159 RDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD 220 (266)
Q Consensus 159 r~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~ 220 (266)
.+..++.+.+++.... ...+-|+|+.|+|||+||+.+++.... .....++++++.
T Consensus 22 ~~~~~~~l~~~~~~~~------~~~lll~G~~G~GKT~la~~~~~~~~~-~~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAGKG------DRFLYLWGESGSGKSHLLQAACAAAEE-RGKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhcCC------CCeEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEeHHH
Confidence 3456677777754322 468889999999999999999987321 134455665544
No 85
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0033 Score=57.72 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+.-++.|.+++..+.- ...+-++|+.|+||||+|+.+.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l-----~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYL-----HHAYLFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC-----CeeEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999976542 457789999999999999887764
No 86
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.07 E-value=0.004 Score=55.94 Aligned_cols=26 Identities=38% Similarity=0.425 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
+..+|.++|..|+||||++..+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998887653
No 87
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.07 E-value=0.00068 Score=58.87 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|++..++.+.+++..+. +..+-++|+.|+||||+|+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~------~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN------LPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999988886543 3457799999999999999987753
No 88
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0033 Score=58.65 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++||-+.-++.|.+++..+.- ...+-++|..|+||||+|+.+.+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gRL-----pHA~LFtGP~GvGKTTLAriLAka 61 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRL-----HHAYLFTGTRGVGKTTLSRILAKS 61 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCC-----ceEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999976652 467789999999999999887654
No 89
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.07 E-value=0.00046 Score=50.84 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.|.|+.|+||||||+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998876
No 90
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.06 E-value=0.0019 Score=55.62 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=53.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHH
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKL 252 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l 252 (266)
+.-+++-|.|++|+||||||.++.-. ... -..++||+....++.. .+++++.... ...+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 34679999999999999999887654 223 5678899887777753 3344443211 233456666666
Q ss_pred HHHcC-CceEEEEeC
Q 045226 253 KEALL-KKKFFDCLG 266 (266)
Q Consensus 253 ~~~L~-~kr~LiVLD 266 (266)
...++ +.--|||+|
T Consensus 126 ~~li~s~~~~lIVID 140 (325)
T cd00983 126 DSLVRSGAVDLIVVD 140 (325)
T ss_pred HHHHhccCCCEEEEc
Confidence 66554 345678877
No 91
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0017 Score=57.65 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...++.++|++|+||||++..+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999888754
No 92
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.04 E-value=0.00059 Score=56.02 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|.|+|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999776
No 93
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.03 E-value=0.0043 Score=52.11 Aligned_cols=85 Identities=20% Similarity=0.147 Sum_probs=51.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCC-ceEEEEecCCCC-HHHHHHHHHHHhcCCCC-------CCCChH-----
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFK-PKAWVCVSDDFD-VLRISKAILESITLSSC-------DLKDLN----- 246 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~il~~l~~~~~-------~~~~~~----- 246 (266)
-.-++|.|..|+|||||++.+++....+ |+ .++++-+.+... ..++.+++...-..... +.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999999984322 53 556666776654 34455555442111100 111111
Q ss_pred HHHHHHHHHc--C-CceEEEEeC
Q 045226 247 SVQLKLKEAL--L-KKKFFDCLG 266 (266)
Q Consensus 247 ~~~~~l~~~L--~-~kr~LiVLD 266 (266)
...-.+-+++ + +|.+||++|
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~D 170 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFID 170 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEe
Confidence 1223355555 3 899999998
No 94
>PRK05439 pantothenate kinase; Provisional
Probab=97.00 E-value=0.0068 Score=51.97 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=23.2
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 178 AANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 178 ~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
....-+|+|.|..|+||||+|+.+..-
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999988763
No 95
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.99 E-value=0.003 Score=54.41 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|++..++.+..++..+. ...+-++|..|+||||+|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~------~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN------MPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999986543 3457999999999999999998863
No 96
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00066 Score=51.81 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKR 206 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~ 206 (266)
..-|.|.||+|+|||||++.+.+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 45789999999999999999987643
No 97
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.98 E-value=0.0044 Score=53.94 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=56.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcccccc----C-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC---------CCCCh
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVE----D-FKPKAWVCVSDDFDVLRISKAILESITLSSC---------DLKDL 245 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~----~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~---------~~~~~ 245 (266)
...++-|.|.+|+|||+|+..++-..... . -..++||+....|++..+ .+|++.++.... ...+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCH
Confidence 46799999999999999998776432211 1 237899999999998875 566776654321 12344
Q ss_pred HHHHHHHHH---Hc-CCceEEEEeC
Q 045226 246 NSVQLKLKE---AL-LKKKFFDCLG 266 (266)
Q Consensus 246 ~~~~~~l~~---~L-~~kr~LiVLD 266 (266)
+++...+.. .+ ..+--|||+|
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVID 225 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVD 225 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEe
Confidence 544444332 23 3455677877
No 98
>PRK09354 recA recombinase A; Provisional
Probab=96.98 E-value=0.0026 Score=55.31 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=54.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHH
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKL 252 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l 252 (266)
+.-+++-|.|+.|+||||||.++... ... -..++||..-..++.. .+++++.... ...+.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34689999999999999999887655 233 5678899988887753 3444443211 223456666666
Q ss_pred HHHcC-CceEEEEeC
Q 045226 253 KEALL-KKKFFDCLG 266 (266)
Q Consensus 253 ~~~L~-~kr~LiVLD 266 (266)
...++ ++--|||+|
T Consensus 131 ~~li~s~~~~lIVID 145 (349)
T PRK09354 131 DTLVRSGAVDLIVVD 145 (349)
T ss_pred HHHhhcCCCCEEEEe
Confidence 66653 345678877
No 99
>PRK06547 hypothetical protein; Provisional
Probab=96.98 E-value=0.0012 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...+|+|.|+.|+||||||+.+....
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999997753
No 100
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.0043 Score=54.91 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|.++|+.|+||||.+..+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999887654
No 101
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.95 E-value=0.00093 Score=65.16 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=38.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..++||+.++..+++.|.... ..-+-++|.+|+|||+||..+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999998765 2345589999999999999887763
No 102
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.95 E-value=0.0049 Score=51.16 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=50.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEe---------cCCCCHHHH--HHHHHHHhcCCCCCC----
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCV---------SDDFDVLRI--SKAILESITLSSCDL---- 242 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~v---------s~~~~~~~i--~~~il~~l~~~~~~~---- 242 (266)
.+..+|-++||+|.||||..|.++.+. .. +.+-.-|+. .-..|+.+. .++.+++.+..++..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl--~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL--HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH--hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 356788899999999999999999873 33 433333331 223344443 467788776654421
Q ss_pred -----CChHHHHHHHHHHcCCceEEEE
Q 045226 243 -----KDLNSVQLKLKEALLKKKFFDC 264 (266)
Q Consensus 243 -----~~~~~~~~~l~~~L~~kr~LiV 264 (266)
...++....|.+.-..-.|.||
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~li 121 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLI 121 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEE
Confidence 2344555555555444445543
No 103
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.94 E-value=0.0039 Score=58.68 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..+..|.+++..+.. ...+-++|+.|+||||+|+.+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl-----~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRL-----HHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999886542 467899999999999999988654
No 104
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.94 E-value=0.0013 Score=51.98 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 105
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.0019 Score=60.50 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+.-++.|.+++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999988887654 2456789999999999999998765
No 106
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.94 E-value=0.0048 Score=53.12 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=41.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccC-----CCceEEEEecCCCCHHHHHHHHHHHhcC
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVED-----FKPKAWVCVSDDFDVLRISKAILESITL 237 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-----F~~~~wv~vs~~~~~~~i~~~il~~l~~ 237 (266)
...++-|+|.+|+|||+|+.++........ =..++||+....|+...+ .++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl-~~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERI-MQMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 468999999999999999988865533211 137899999998888775 445555443
No 107
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.94 E-value=0.0015 Score=54.76 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=32.6
Q ss_pred ccccchhhHHHH---HHHHhc------CCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 155 AVYGRDTEKARV---LDMVLK------NDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 155 ~~vGr~~~~~~l---~~~L~~------~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|.+..++.| +.|+.- ......+...-+-++|++|+||||+|+.+.+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 578887665544 344321 11001234566789999999999999999764
No 108
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.94 E-value=0.0046 Score=47.20 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=29.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCC
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFD 223 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~ 223 (266)
++.|+|.+|+||||++..+.... .. -..++|+.....++
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 46899999999999999997763 22 35667777766544
No 109
>PRK05642 DNA replication initiation factor; Validated
Probab=96.92 E-value=0.0031 Score=52.06 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=27.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEec
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVS 219 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs 219 (266)
...+-|+|..|+|||.|++.+.+...-+ -..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-GEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEeeHH
Confidence 4678999999999999999998753211 2345666653
No 110
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0089 Score=57.04 Aligned_cols=78 Identities=26% Similarity=0.286 Sum_probs=41.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcC
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFD--VLRISKAILESITLSSCDLKDLNSVQLKLKEALL 257 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~--~~~i~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 257 (266)
..||+++|+.|+||||++..+........ -..+..|+. ..+. ..+-++...+.++.+.....+..++...+. .+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hhc
Confidence 47999999999999999988876532121 123333332 2232 334444444444433322334444444443 233
Q ss_pred Cce
Q 045226 258 KKK 260 (266)
Q Consensus 258 ~kr 260 (266)
++.
T Consensus 263 ~~D 265 (767)
T PRK14723 263 DKH 265 (767)
T ss_pred CCC
Confidence 444
No 111
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.0014 Score=57.67 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|-+.-++.+.+.+..+.- ...+-++|+.|+||||+|+.+.+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~-----~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRI-----HHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCC-----CeEEEEecCCCCCHHHHHHHHHHHh
Confidence 4689999999999988876542 4678899999999999999987653
No 112
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.91 E-value=0.00088 Score=50.46 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
||-++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998854
No 113
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.91 E-value=0.0018 Score=53.54 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=27.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD 220 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~ 220 (266)
...+-|+|+.|+|||+|++.+++..... -..+.++++..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~ 83 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDK 83 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHH
Confidence 3578999999999999999998863211 23345555543
No 114
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.001 Score=55.43 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=39.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKR 206 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~ 206 (266)
.+++|.++-++.+-=.+..... .+..+.=+-+.|++|.||||||..+.+...
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg 77 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELG 77 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhc
Confidence 4789988877777666654221 234578899999999999999999998743
No 115
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0052 Score=53.89 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+++++|+.|+||||++..+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888754
No 116
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.0081 Score=55.54 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+.-++.|.+++..+.. ...+-++|+.|+||||+|+.+...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~-----~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRL-----HHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999876542 456789999999999999988654
No 117
>PRK08116 hypothetical protein; Validated
Probab=96.88 E-value=0.0042 Score=52.31 Aligned_cols=36 Identities=31% Similarity=0.232 Sum_probs=26.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEe
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCV 218 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~v 218 (266)
.-+-++|..|+|||.||..+++....+ -..++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEH
Confidence 357899999999999999999984222 334556654
No 118
>PRK06762 hypothetical protein; Provisional
Probab=96.88 E-value=0.0009 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|+|+.|+||||+|+.+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998765
No 119
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.87 E-value=0.0008 Score=44.22 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998876
No 120
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.86 E-value=0.0012 Score=58.30 Aligned_cols=54 Identities=22% Similarity=0.178 Sum_probs=39.5
Q ss_pred CCCccccchhhHHHHHHHHhcCCC-C------CCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 152 SEPAVYGRDTEKARVLDMVLKNDP-C------DAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~-~------~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...++.|++..++.|.+.+...-. + +-...+-+.++|++|+|||+||+.+++..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 335789999999999887643110 0 11224568899999999999999999873
No 121
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.00083 Score=53.61 Aligned_cols=26 Identities=42% Similarity=0.479 Sum_probs=23.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKR 206 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~ 206 (266)
..+|+|-||-|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 47999999999999999999998854
No 122
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.85 E-value=0.0016 Score=53.46 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=37.8
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 151 TSEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 151 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+.-.+++|.+.+++.|++-...-- .+.+..-+-+||..|+|||+|++.+.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 445689999999988887543211 0112455667999999999999999886
No 123
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.84 E-value=0.00071 Score=54.22 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|+|.|+.|+||||||+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 124
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0062 Score=51.31 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=57.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHHHHH-hcC---CCC-CCCChHHHHHHH
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAILES-ITL---SSC-DLKDLNSVQLKL 252 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~il~~-l~~---~~~-~~~~~~~~~~~l 252 (266)
+.-+++=|.|+.|.||||||.+++-. ++. -..++|++.-+.+++..+ +.+... +.. ..+ ......++++.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~-~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERA-KQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHH-HHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 45689999999999999999887765 455 668899999999998764 445544 221 111 122233445555
Q ss_pred HHHcCCceEEEEeC
Q 045226 253 KEALLKKKFFDCLG 266 (266)
Q Consensus 253 ~~~L~~kr~LiVLD 266 (266)
......+=-|||+|
T Consensus 135 ~~~~~~~i~LvVVD 148 (279)
T COG0468 135 ARSGAEKIDLLVVD 148 (279)
T ss_pred HHhccCCCCEEEEe
Confidence 55555456788877
No 125
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.84 E-value=0.0065 Score=52.41 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcccccc----C-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC---------CCCCh
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVE----D-FKPKAWVCVSDDFDVLRISKAILESITLSSC---------DLKDL 245 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~----~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~---------~~~~~ 245 (266)
...++-|.|..|+|||+|+..+....... . -..++||+....|+...+ ..+++.++.... ...+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 46899999999999999998876532221 1 246799998888888764 445555443221 12334
Q ss_pred HHHHHHHH---HHcC-CceEEEEeC
Q 045226 246 NSVQLKLK---EALL-KKKFFDCLG 266 (266)
Q Consensus 246 ~~~~~~l~---~~L~-~kr~LiVLD 266 (266)
+++...+. ..+. .+--|||+|
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVID 198 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVD 198 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEE
Confidence 44433333 3343 345678877
No 126
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.83 E-value=0.0062 Score=50.96 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=53.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcccccc----C-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC---------CCCChH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVE----D-FKPKAWVCVSDDFDVLRISKAILESITLSSC---------DLKDLN 246 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~----~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~---------~~~~~~ 246 (266)
-.|.=|+|.+|+|||.|+..+.-...+. . =..++|++....|+...+ .+|++....... ...+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl-~~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERL-QQIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHH-HHHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHH-HHHhhccccccchhhhceeeeecCCHH
Confidence 4699999999999999997765432222 1 236899999999998876 457776543211 123445
Q ss_pred HHHHHHH---HHc-CCceEEEEeC
Q 045226 247 SVQLKLK---EAL-LKKKFFDCLG 266 (266)
Q Consensus 247 ~~~~~l~---~~L-~~kr~LiVLD 266 (266)
++...|. ..+ .++=-|||+|
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVID 140 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVID 140 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred HHHHHHHHHHhhccccceEEEEec
Confidence 5444443 333 3455688877
No 127
>PRK12377 putative replication protein; Provisional
Probab=96.83 E-value=0.0017 Score=53.99 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=29.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEec
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVS 219 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs 219 (266)
...+.++|..|+|||+||..+.+...- ....+++++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~-~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEHH
Confidence 357899999999999999999997431 24445777654
No 128
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.82 E-value=0.02 Score=54.62 Aligned_cols=97 Identities=23% Similarity=0.368 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC-CCCHHHHHHHHHHHhcCCCCC
Q 045226 163 KARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD-DFDVLRISKAILESITLSSCD 241 (266)
Q Consensus 163 ~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~il~~l~~~~~~ 241 (266)
+..|++.|.... ..+++-|..++|-|||||+-..... ...=..+.|.+... +.++..++.-++..++.-.++
T Consensus 24 R~rL~~~L~~~~-----~~RL~li~APAGfGKttl~aq~~~~--~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 24 RPRLLDRLRRAN-----DYRLILISAPAGFGKTTLLAQWREL--AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred cHHHHHHHhcCC-----CceEEEEeCCCCCcHHHHHHHHHHh--cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 346788887654 4899999999999999999998752 11135789999776 457788888888888743221
Q ss_pred -------------CCChHHHHHHHHHHcC--CceEEEEeC
Q 045226 242 -------------LKDLNSVQLKLKEALL--KKKFFDCLG 266 (266)
Q Consensus 242 -------------~~~~~~~~~~l~~~L~--~kr~LiVLD 266 (266)
..+...+...+..-|. .+...+|||
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlD 136 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLD 136 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEec
Confidence 2233445555555443 357888887
No 129
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0024 Score=48.85 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=32.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCC
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLS 238 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~ 238 (266)
+|.|-|++|.||||+|+.+.++.-.. | .+.-.++++|++.-+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-L-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-e-----------eeccHHHHHHHHHcCCC
Confidence 78999999999999999999884322 1 23345778888766654
No 130
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.0087 Score=53.45 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+++++|+.|+||||++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999876543
No 131
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0017 Score=58.96 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..+..|...+..+.. ...+-++|+.|+||||+|+.+.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l-----~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSI-----SHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689988887778777765442 467889999999999999998765
No 132
>PRK06217 hypothetical protein; Validated
Probab=96.81 E-value=0.0027 Score=50.27 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=27.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccC--CCceEEEE
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVED--FKPKAWVC 217 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~--F~~~~wv~ 217 (266)
..|.|.|++|.||||||+.+........ .|..+|-.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~ 39 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP 39 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc
Confidence 3589999999999999999987754433 25566643
No 133
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.80 E-value=0.012 Score=53.55 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..|++++|+.|+||||++..+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999988654
No 134
>PHA00729 NTP-binding motif containing protein
Probab=96.80 E-value=0.002 Score=52.40 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|.|.|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998876
No 135
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.80 E-value=0.013 Score=50.44 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=42.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcccccc----C-CCceEEEEecCCCCHHHHHHHHHHHhcCC
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVE----D-FKPKAWVCVSDDFDVLRISKAILESITLS 238 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~----~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~ 238 (266)
.-+++-|+|+.|+|||+|+.++.-..... . =..++||+.-..|++..+. +++++++..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 46899999999999999998765322111 2 2478999999999988864 566766543
No 136
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.0064 Score=57.17 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+.-+..|.+.+..+.- ...+-++|+.|+||||+|+.+.+.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl-----~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRL-----HHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999989888876542 356789999999999999998765
No 137
>PRK06893 DNA replication initiation factor; Validated
Probab=96.80 E-value=0.0089 Score=49.14 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEec
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVS 219 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs 219 (266)
-..+-++|+.|+|||+|++.+.+....+ .....|++++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHH
Confidence 3578999999999999999999873211 3345667664
No 138
>PTZ00035 Rad51 protein; Provisional
Probab=96.80 E-value=0.011 Score=51.59 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccc---cC--CCceEEEEecCCCCHHHHHHHHHHHhcCCCC---------CCCCh
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRV---ED--FKPKAWVCVSDDFDVLRISKAILESITLSSC---------DLKDL 245 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~---~~--F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~---------~~~~~ 245 (266)
.-.++-|+|..|+|||+|+..+.-.... .. =..++||.....|+...+ ..++++++.... ...+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 4689999999999999999887644322 11 235679998888887774 445555544321 22344
Q ss_pred HHHHHHHHH---Hc-CCceEEEEeC
Q 045226 246 NSVQLKLKE---AL-LKKKFFDCLG 266 (266)
Q Consensus 246 ~~~~~~l~~---~L-~~kr~LiVLD 266 (266)
+++...|.. .+ ..+--|||+|
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVID 220 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVD 220 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEE
Confidence 444444432 33 3445678877
No 139
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.76 E-value=0.0051 Score=59.62 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=38.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..++.|.+++.........+..++.++|+.|+|||+||+.+.+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999998887653210011233589999999999999999998873
No 140
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0019 Score=50.60 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++.|.|+.|+||+||++.++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999998
No 141
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.74 E-value=0.0021 Score=48.60 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=28.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD 220 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~ 220 (266)
++|+|+|..|+|||||++.+.+...-+.+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 489999999999999999999885433266666777666
No 142
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.73 E-value=0.009 Score=49.64 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=47.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccc--cC--CCceEEEEecCCCCHHHHHHHHHHHhcCCCC------CCCChHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRV--ED--FKPKAWVCVSDDFDVLRISKAILESITLSSC------DLKDLNSVQL 250 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~--~~--F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~------~~~~~~~~~~ 250 (266)
..++++||..|.|||||++.+..=.+. .. |+..-+...+ .....+-..++++.++.... ..-+-.++++
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 468999999999999999999875321 11 3322211122 22233445666776664421 1112223333
Q ss_pred -HHHHHcCCceEEEEeC
Q 045226 251 -KLKEALLKKKFFDCLG 266 (266)
Q Consensus 251 -~l~~~L~~kr~LiVLD 266 (266)
.|...|.-+.-|||.|
T Consensus 118 i~IARALal~P~liV~D 134 (268)
T COG4608 118 IGIARALALNPKLIVAD 134 (268)
T ss_pred HHHHHHHhhCCcEEEec
Confidence 2555566666666665
No 143
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.73 E-value=0.011 Score=51.47 Aligned_cols=86 Identities=15% Similarity=0.055 Sum_probs=55.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccc----cC-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC---------CCCCh
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRV----ED-FKPKAWVCVSDDFDVLRISKAILESITLSSC---------DLKDL 245 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~----~~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~---------~~~~~ 245 (266)
.-+++=|.|..|+|||+|+.+++-.... .. -..++||+....|++..+ .+|+++++.... ...+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl-~~ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRI-VPIAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHH-HHHHHHcCCChhhhcCeEEEecCCCH
Confidence 4688999999999999999877532211 22 357899999999998886 446676655421 22345
Q ss_pred HHHHHHHH---HHc-CCceEEEEeC
Q 045226 246 NSVQLKLK---EAL-LKKKFFDCLG 266 (266)
Q Consensus 246 ~~~~~~l~---~~L-~~kr~LiVLD 266 (266)
+++...+. ..+ ..+--|||+|
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVID 228 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVD 228 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 54443333 233 2334567776
No 144
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.73 E-value=0.0067 Score=55.49 Aligned_cols=52 Identities=27% Similarity=0.244 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDP-------CDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.++.|.+..++.|.+.+...-. -+-...+-+-++|++|+|||++|+.+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 4577899888888776532100 011234568899999999999999999974
No 145
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.73 E-value=0.0014 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+|.|+|+.|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998754
No 146
>PRK14527 adenylate kinase; Provisional
Probab=96.72 E-value=0.0025 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..+|.|+|++|.||||+|+.+....
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999987653
No 147
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0096 Score=54.73 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=40.0
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEecCCCcHHHHHHHHHccccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPC------DAANFRVIALVGMGGIGKTTLAQEVYNDKRV 207 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~ 207 (266)
.++-|.+....+|.+++..-..+ +-...+=+-++|++|+|||.||+.+.+...+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v 249 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV 249 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC
Confidence 46778898888888777652111 1234566789999999999999999998544
No 148
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.68 E-value=0.0032 Score=47.27 Aligned_cols=42 Identities=33% Similarity=0.352 Sum_probs=30.0
Q ss_pred EEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHH
Q 045226 184 IALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISK 229 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 229 (266)
|-++|+.|+|||+||+.+.... . ....-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~--~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G--RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T--CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h--cceEEEEecccccccccee
Confidence 5689999999999999998762 1 1233457777777776553
No 149
>PRK03839 putative kinase; Provisional
Probab=96.68 E-value=0.0013 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.|.|+|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998873
No 150
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.68 E-value=0.0012 Score=48.73 Aligned_cols=22 Identities=45% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
|-|+|+.|+|||+||+.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999983
No 151
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.0025 Score=57.54 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+..+..|..++..+.- ...+-++|+.|+||||+|+.+.+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri-----~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKI-----GHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999998876542 357889999999999999999775
No 152
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.66 E-value=0.002 Score=57.35 Aligned_cols=52 Identities=23% Similarity=0.192 Sum_probs=38.4
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 153 EPAVYGRDTEKARVLDMVLKNDP-------CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++.|++..+++|.+.+...-. -+-...+-|-++|++|+|||+||+.+++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 35788999999888886632100 01123567889999999999999999986
No 153
>PRK04040 adenylate kinase; Provisional
Probab=96.66 E-value=0.0017 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.664 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 154
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.65 E-value=0.012 Score=52.54 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
...+|.++|+.|+||||++..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987754
No 155
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.65 E-value=0.0016 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++|.|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999999885
No 156
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.63 E-value=0.0013 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998763
No 157
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.61 E-value=0.0017 Score=51.10 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998664
No 158
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.61 E-value=0.0023 Score=50.03 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...+++|+|..|+|||||+..+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 35799999999999999999988664
No 159
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.59 E-value=0.0015 Score=51.63 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998876
No 160
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.59 E-value=0.0093 Score=50.35 Aligned_cols=25 Identities=40% Similarity=0.598 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+.++|.++|++|+||||++..+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999988777654
No 161
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.58 E-value=0.0023 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..+|.|+|++|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999988763
No 162
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.57 E-value=0.0026 Score=61.04 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=42.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc---cccC--CCceEEE
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK---RVED--FKPKAWV 216 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~---~~~~--F~~~~wv 216 (266)
..++||+.++..+++.|..... .-+-++|++|+|||+||+.+.... .+.. .++.+|.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~ 247 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe
Confidence 4689999999999999987542 233579999999999999988653 1222 3566664
No 163
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.56 E-value=0.026 Score=54.76 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|-+..++.|.+++..+.- ...+-++|+.|+||||+|+.+.+..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri-----~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRI-----NHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999999876542 4578899999999999999886653
No 164
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.56 E-value=0.002 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999876
No 165
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.54 E-value=0.0026 Score=51.44 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
....|.|+|+.|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4688999999999999999998754
No 166
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.0035 Score=49.37 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDKR 206 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~~ 206 (266)
.|.|.|++|.||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988743
No 167
>PRK14974 cell division protein FtsY; Provisional
Probab=96.53 E-value=0.01 Score=51.56 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+|.++|+.|+||||++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3689999999999999977777654
No 168
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.52 E-value=0.011 Score=48.63 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=49.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-------------------
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSSC------------------- 240 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~------------------- 240 (266)
.-+++.|+|..|+|||+|+.++.... .+.=..++|++..+. ...+.+.+ ++++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~-~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA-LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH-HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 46899999999999999999874331 111246778887654 34555543 23321100
Q ss_pred -CCCChHHHHHHHHHHcCC-ceEEEEeC
Q 045226 241 -DLKDLNSVQLKLKEALLK-KKFFDCLG 266 (266)
Q Consensus 241 -~~~~~~~~~~~l~~~L~~-kr~LiVLD 266 (266)
...+.+.+...+.+.+.. +.-++|+|
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviD 127 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIID 127 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEe
Confidence 112335666777777653 34466666
No 169
>PRK08727 hypothetical protein; Validated
Probab=96.52 E-value=0.015 Score=47.89 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=28.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD 220 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~ 220 (266)
..+.|+|..|+|||+|++.+++... +.....+++++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~-~~~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE-QAGRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEeHHH
Confidence 4599999999999999999988632 1233556676544
No 170
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.51 E-value=0.019 Score=51.43 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=26.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCC-CceEEEEe
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDF-KPKAWVCV 218 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F-~~~~wv~v 218 (266)
...+-|+|+.|+|||+|++.+++......- -.+++++.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 356889999999999999999987432211 23455553
No 171
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.50 E-value=0.0062 Score=55.05 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=27.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCC-ceEEEEe
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFK-PKAWVCV 218 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~-~~~wv~v 218 (266)
..-+-|+|..|+|||+|++.+.+.......+ .++|++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 3459999999999999999999974221133 3455553
No 172
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.49 E-value=0.0019 Score=48.86 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|.|+|+.|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998865
No 173
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.48 E-value=0.0028 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+|.|+|+.|+||||||+.+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999875
No 174
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.48 E-value=0.0024 Score=49.76 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...|.++|++|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998863
No 175
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.47 E-value=0.018 Score=47.50 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=33.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHH
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKA 230 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 230 (266)
.-+++-|.|.+|+|||+||.++.... .+.-+.++||+... ++..+.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-HHcCCcEEEEEeeC--CHHHHHHH
Confidence 46899999999999999998754331 11145777887765 44455554
No 176
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.47 E-value=0.0059 Score=50.01 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...+.|+|..|+|||+||+.+++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999863
No 177
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.47 E-value=0.0047 Score=49.08 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999876
No 178
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.0042 Score=55.42 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+.-++.|.+++..+.- ...+-++|+.|+||||+|..+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~-----~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRV-----GHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCc-----ceeEEEECCCCCCHHHHHHHHHHH
Confidence 4789988888888888876542 456889999999999999887654
No 179
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.44 E-value=0.0027 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHcccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDKR 206 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~~ 206 (266)
|.|+|..|+|||||.+.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999887653
No 180
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.44 E-value=0.024 Score=51.00 Aligned_cols=84 Identities=12% Similarity=0.025 Sum_probs=47.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCC------CCCCChH-----HHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSS------CDLKDLN-----SVQ 249 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~------~~~~~~~-----~~~ 249 (266)
-..++|+|..|+|||||++.+..... ....++|+.--..-++..+....+....... .+..... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~--pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA--FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC--CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 45899999999999999998886521 1334444443344455555555544332111 1111111 122
Q ss_pred HHHHHHc--CCceEEEEeC
Q 045226 250 LKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 250 ~~l~~~L--~~kr~LiVLD 266 (266)
-.+-+++ ++|.+||++|
T Consensus 243 ~~iAEyfrd~G~~Vll~~D 261 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVD 261 (450)
T ss_pred HHHHHHHHHcCCCEEEecc
Confidence 2344444 5899999998
No 181
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.44 E-value=0.0038 Score=50.66 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|+|+|-||+||||+|-.+...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~ 23 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR 23 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH
Confidence 6899999999999999885544
No 182
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.43 E-value=0.0056 Score=45.72 Aligned_cols=41 Identities=27% Similarity=0.152 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 161 TEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 161 ~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
++...+.+.|...-. .-.+|.+.|.-|.|||||++.+....
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344455555543211 23699999999999999999998864
No 183
>PRK00625 shikimate kinase; Provisional
Probab=96.43 E-value=0.0022 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|.++||.|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999776
No 184
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.43 E-value=0.0073 Score=51.94 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=51.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHH
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKL 252 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l 252 (266)
+.-+++-|.|+.|+||||||..+... .+. -..++||.....+++.. +++++.... ...+.++..+.+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 34579999999999999999988865 344 56889999999888643 445544321 223445555666
Q ss_pred HHHcCC-ceEEEEeC
Q 045226 253 KEALLK-KKFFDCLG 266 (266)
Q Consensus 253 ~~~L~~-kr~LiVLD 266 (266)
..+++. .--++|+|
T Consensus 124 e~lirsg~~~lVVvD 138 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVD 138 (322)
T ss_dssp HHHHHTTSESEEEEE
T ss_pred HHHhhcccccEEEEe
Confidence 666643 44577776
No 185
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.0043 Score=57.64 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.+.+++..+.. ...+-++|+.|+||||+|+.+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl-----~hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKL-----THAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998866542 467889999999999999998654
No 186
>CHL00181 cbbX CbbX; Provisional
Probab=96.42 E-value=0.0075 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+-+.|++|+||||+|+.+++.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999765
No 187
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.42 E-value=0.0031 Score=60.88 Aligned_cols=51 Identities=27% Similarity=0.468 Sum_probs=39.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+.+|.+.-++.|+++|............++.++|++|+||||+|+.+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999887422111223468999999999999999999875
No 188
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.013 Score=49.85 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=43.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcccccc--C-CCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcC
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVE--D-FKPKAWVCVSDDFDVLRISKAILESITLSSCDLKDLNSVQLKLKEALL 257 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~--~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 257 (266)
-++|-++|++|.|||+|.+..+....++ + +.....+.++. ..++.+.... ...-...+-++|.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 3789999999999999999999986543 3 54444454432 2333333321 11234455566666666
Q ss_pred CceEE
Q 045226 258 KKKFF 262 (266)
Q Consensus 258 ~kr~L 262 (266)
++..|
T Consensus 247 d~~~l 251 (423)
T KOG0744|consen 247 DRGNL 251 (423)
T ss_pred CCCcE
Confidence 65443
No 189
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.40 E-value=0.0024 Score=48.03 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999876
No 190
>PRK10536 hypothetical protein; Provisional
Probab=96.38 E-value=0.02 Score=47.58 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=39.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceE
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKA 214 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~ 214 (266)
..+.++......++.+|... .++.+.|+.|+|||+||..+..+.-... |+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 45677888888888888642 4899999999999999998776532233 55444
No 191
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.37 E-value=0.003 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999776
No 192
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.37 E-value=0.017 Score=51.64 Aligned_cols=83 Identities=12% Similarity=0.019 Sum_probs=49.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCH-HHHHHHHHHHhcCCCC----CCCC--h-H-----H
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDV-LRISKAILESITLSSC----DLKD--L-N-----S 247 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~-~~i~~~il~~l~~~~~----~~~~--~-~-----~ 247 (266)
-..++|+|..|+|||||++.+.+.. ..+..+.+-+.+..+. .++.++++..-..... ...| . . .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~---~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT---TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC---CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 3579999999999999999998752 1456666767766543 4455555433111110 1111 1 1 1
Q ss_pred HHHHHHHHc--CCceEEEEeC
Q 045226 248 VQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 248 ~~~~l~~~L--~~kr~LiVLD 266 (266)
.+-.+-+++ +++.+||++|
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~D 259 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMD 259 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEc
Confidence 222344444 6899999998
No 193
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0026 Score=49.15 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=18.6
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 045226 183 VIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~ 202 (266)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999886
No 194
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.37 E-value=0.012 Score=52.27 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=46.7
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC--CCceEEEEe-cCCC
Q 045226 154 PAVYGRDTEKARVLDMVLKN--------DPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED--FKPKAWVCV-SDDF 222 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~--F~~~~wv~v-s~~~ 222 (266)
..++|.++.++.+.-.+... +.......+-|-++|+.|+|||+||+.+.......- ++..-+... ....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 35788888887776555431 000111246788999999999999999988743332 243322221 1223
Q ss_pred CHHHHHHHHHH
Q 045226 223 DVLRISKAILE 233 (266)
Q Consensus 223 ~~~~i~~~il~ 233 (266)
+...+++.+.+
T Consensus 92 dvE~i~r~l~e 102 (441)
T TIGR00390 92 DVESMVRDLTD 102 (441)
T ss_pred CHHHHHHHHHH
Confidence 45555555443
No 195
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.36 E-value=0.015 Score=54.47 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=55.0
Q ss_pred ccccchhhHHHHHHHHhcCCC----------------------------CCCCCcEEEEEEecCCCcHHHHHHHHHcccc
Q 045226 155 AVYGRDTEKARVLDMVLKNDP----------------------------CDAANFRVIALVGMGGIGKTTLAQEVYNDKR 206 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~----------------------------~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~ 206 (266)
++.|.+..-..++.||..-+. ...+.-+++-.+|++|+||||||..|.++.-
T Consensus 272 dLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaG 351 (877)
T KOG1969|consen 272 DLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAG 351 (877)
T ss_pred HHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhcC
Confidence 567777766777777753210 0124467999999999999999999998732
Q ss_pred ccCCCceEEEEecCCCCHHHHHHHHHHHhc
Q 045226 207 VEDFKPKAWVCVSDDFDVLRISKAILESIT 236 (266)
Q Consensus 207 ~~~F~~~~wv~vs~~~~~~~i~~~il~~l~ 236 (266)
| .++=|+.|..-+...+=..|...+.
T Consensus 352 ---Y-sVvEINASDeRt~~~v~~kI~~avq 377 (877)
T KOG1969|consen 352 ---Y-SVVEINASDERTAPMVKEKIENAVQ 377 (877)
T ss_pred ---c-eEEEecccccccHHHHHHHHHHHHh
Confidence 2 3456788888887777666666554
No 196
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.36 E-value=0.02 Score=47.43 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=26.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEe
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCV 218 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~v 218 (266)
...+-++|.+|+|||+||..+.+...-. -..++++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it~ 135 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIITV 135 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEH
Confidence 3478899999999999999999874211 233455543
No 197
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.36 E-value=0.005 Score=55.67 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=36.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|+++.++.+...+..+. -+-|.|++|+|||+||+.+...
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 57999999999998887654 5779999999999999999875
No 198
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.35 E-value=0.018 Score=45.37 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||.+.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 369999999999999999999875
No 199
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.33 E-value=0.0062 Score=53.34 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.+.+++..+.. ...+-++|+.|+||||+|+.+...
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~-----~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRI-----AHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999876542 467889999999999999887654
No 200
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.32 E-value=0.0027 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|.++|+.|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4778999999999999999876
No 201
>PRK13975 thymidylate kinase; Provisional
Probab=96.31 E-value=0.0034 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999874
No 202
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.30 E-value=0.0052 Score=50.77 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=41.1
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcccc
Q 045226 154 PAVYGRDTEKA---RVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKR 206 (266)
Q Consensus 154 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~ 206 (266)
++++|.+..+. -|++.|.+++.=+++-.+-|-..|++|.|||.+|+.+.|..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 57889876543 477777765432456688999999999999999999998754
No 203
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.30 E-value=0.007 Score=56.95 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=54.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAIL 232 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~il 232 (266)
.+++|.+..++.|...+... +.+-++|..|+||||||+.+.... -.. |+..+|..-+. .+...+++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~-~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPE-DPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCC-cchHHHHHHHH
Confidence 46889888888777766543 358889999999999999998763 223 67788876644 36667778877
Q ss_pred HHhcC
Q 045226 233 ESITL 237 (266)
Q Consensus 233 ~~l~~ 237 (266)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 65553
No 204
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.30 E-value=0.014 Score=51.94 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKN--------DPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..++|.+..++.+..++... .........-|-++|+.|+|||+||+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45889998888888777541 00001123678999999999999999998764
No 205
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.16 Score=42.05 Aligned_cols=55 Identities=31% Similarity=0.297 Sum_probs=35.4
Q ss_pred CCCCccccchhhHHHHHHHHhcC----CC---CCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 151 TSEPAVYGRDTEKARVLDMVLKN----DP---CDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 151 ~~~~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..-.++-|.+-.++++.+...-+ +- -+-...+-+-..|++|.|||.||+.|.|+.
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 33346667776666555543211 00 012335667789999999999999999984
No 206
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.29 E-value=0.033 Score=44.32 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998763
No 207
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.28 E-value=0.0039 Score=48.01 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=25.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccccccCCCceEEEEe
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCV 218 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~v 218 (266)
|++|+|+.|+|||||+..+....+.+.+...+.-+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 589999999999999999888643221544444443
No 208
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.28 E-value=0.01 Score=49.72 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=36.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHH
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAI 231 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~i 231 (266)
.-+++.|.|.+|+|||+++.+..... -. ++.++||+.... ...+.+.+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~--~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG--AREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH--HhcCCcEEEEEecCC--HHHHHHHH
Confidence 46899999999999999998876652 33 889999998885 34444443
No 209
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.0058 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 46899999999999999999854
No 210
>PRK15453 phosphoribulokinase; Provisional
Probab=96.27 E-value=0.026 Score=47.57 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+|+|.|..|+||||+|+.+...
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999988754
No 211
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.27 E-value=0.0042 Score=52.31 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=47.9
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHhc-ccCcHHHHHHHHHHHHHhhhHHhHHHHHH
Q 045226 11 QEGVRAKLKKWEETLKTIEAVLIDAEEK-QLSDRAVKLWLDDLRDLAYDAEDILDEFA 67 (266)
Q Consensus 11 ~~~v~~~~~~L~~~L~~i~~~l~~ae~~-~~~~~~~~~Wl~~lr~~aydaeD~lD~~~ 67 (266)
+.-++.+++-++.+|+++|.||+..-+. .......+.+..++...||++|.++|-|.
T Consensus 316 laflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 316 LAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 3347899999999999999999988544 33344489999999999999999999884
No 212
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.0074 Score=45.55 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-|-|.|-+|+|||||+..+...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 346889999999999999999865
No 213
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.25 E-value=0.0035 Score=49.17 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998765
No 214
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.25 E-value=0.0046 Score=47.46 Aligned_cols=25 Identities=44% Similarity=0.450 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..||=|.|..|.||||||+.+....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999873
No 215
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.23 E-value=0.022 Score=50.33 Aligned_cols=78 Identities=22% Similarity=0.186 Sum_probs=45.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKLKE 254 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l~~ 254 (266)
-.++.|.|.+|+|||||+.++.... .. -..++||+.... ...+ +.-+..++.... ...+.+.+.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 5799999999999999999887652 22 346677765443 2332 222344543221 22344555444432
Q ss_pred HcCCceEEEEeC
Q 045226 255 ALLKKKFFDCLG 266 (266)
Q Consensus 255 ~L~~kr~LiVLD 266 (266)
.+.-+||+|
T Consensus 157 ---~~~~lVVID 165 (372)
T cd01121 157 ---LKPDLVIID 165 (372)
T ss_pred ---cCCcEEEEc
Confidence 345567776
No 216
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.23 E-value=0.0077 Score=48.96 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 217
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.011 Score=56.43 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=39.5
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|-+..++.+.+.+..... ..+.++.++-.+|+.|||||-||+.+...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~ 544 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA 544 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH
Confidence 4689999999988888764221 12445789999999999999999988653
No 218
>PRK13949 shikimate kinase; Provisional
Probab=96.22 E-value=0.0033 Score=49.13 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-|.|+|+.|+|||||++.+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999988763
No 219
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.22 E-value=0.0044 Score=50.10 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++.+|+++|..|+|||||...+...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999998765
No 220
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.21 E-value=0.0045 Score=46.25 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|..|.|||||.+.+....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3689999999999999999988753
No 221
>PRK13947 shikimate kinase; Provisional
Probab=96.20 E-value=0.0037 Score=48.73 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998763
No 222
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.20 E-value=0.0049 Score=44.14 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~ 202 (266)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 223
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.007 Score=56.71 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+++|-+.-+..|.+++..+.. ...+-++|+.|+||||+|+.+.+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl-----~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRL-----HHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence 4689988888889998876542 46788999999999999998843
No 224
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.19 E-value=0.0056 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+|.|+|+.|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3679999999999999999999876
No 225
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.18 E-value=0.0072 Score=52.25 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=43.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 153 EPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...++|.++.++++++.+.......+..-+|+-.+|+.|.||||||..+.+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999997744323445689999999999999999998775
No 226
>PRK04296 thymidine kinase; Provisional
Probab=96.17 E-value=0.0057 Score=48.74 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++-|+|..|.||||+|......
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
Confidence 57888999999999999877665
No 227
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.17 E-value=0.018 Score=48.37 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=33.6
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHH
Q 045226 162 EKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRI 227 (266)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i 227 (266)
-++.+..++..+ .-+-+.|+.|+|||+||+.+.... . ...++++.+...+..++
T Consensus 10 l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~~l--g--~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 10 VTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVARKR--D--RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHHHh--C--CCEEEEeCCccCCHHHH
Confidence 345555555543 234589999999999999998641 1 23345555555554444
No 228
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.17 E-value=0.0032 Score=48.71 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.|+|+.|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998876
No 229
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0053 Score=47.23 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 689999999999999998877654
No 230
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.16 E-value=0.0031 Score=45.28 Aligned_cols=21 Identities=52% Similarity=0.725 Sum_probs=17.8
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999996654
No 231
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.16 E-value=0.004 Score=47.45 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.8
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
|.++|+.|.||||||+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998663
No 232
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.15 E-value=0.0041 Score=50.38 Aligned_cols=24 Identities=42% Similarity=0.672 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 578999999999999999998764
No 233
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.15 E-value=0.0051 Score=56.50 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=52.6
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEE-EecCCCCHHHHHHHHHHHhcCCC----
Q 045226 165 RVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWV-CVSDDFDVLRISKAILESITLSS---- 239 (266)
Q Consensus 165 ~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv-~vs~~~~~~~i~~~il~~l~~~~---- 239 (266)
.++++|..-. .-....|+|+.|+|||||++.|.+......=++.++| -|.+..... .+|-+.+....
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT 476 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIAST 476 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEEC
Confidence 4566665432 2467899999999999999999986322222344434 455543322 33334442111
Q ss_pred CCCCC-----hHHHHHHHHHHc--CCceEEEEeC
Q 045226 240 CDLKD-----LNSVQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 240 ~~~~~-----~~~~~~~l~~~L--~~kr~LiVLD 266 (266)
.+... ...+.-.+-++| .++.+||+||
T Consensus 477 ~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillD 510 (672)
T PRK12678 477 FDRPPSDHTTVAELAIERAKRLVELGKDVVVLLD 510 (672)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 01111 122333344555 7899999998
No 234
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.14 E-value=0.0054 Score=48.50 Aligned_cols=35 Identities=37% Similarity=0.468 Sum_probs=26.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEE
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVC 217 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~ 217 (266)
.++|.|+|+.|+|||||++.+... ... |...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeec
Confidence 478999999999999999999887 334 64444443
No 235
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.14 E-value=0.027 Score=50.56 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=49.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCH-HHHHHHHHHHhcCCCC----CCCC---hH-----H
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDV-LRISKAILESITLSSC----DLKD---LN-----S 247 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~-~~i~~~il~~l~~~~~----~~~~---~~-----~ 247 (266)
-..++|+|..|+|||||++.+.+... -+..+.+-+.+.... .++..+.+..-+.... ...| .. .
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~---~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD---ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC---CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 46789999999999999999997632 345555667665543 3444444433211110 1111 11 1
Q ss_pred HHHHHHHHc--CCceEEEEeC
Q 045226 248 VQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 248 ~~~~l~~~L--~~kr~LiVLD 266 (266)
..-.+-+++ ++|.+||++|
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~D 255 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMD 255 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEe
Confidence 222344554 6899999998
No 236
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.13 E-value=0.023 Score=54.52 Aligned_cols=80 Identities=14% Similarity=0.051 Sum_probs=55.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHH
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKLK 253 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l~ 253 (266)
.-+++-|.|..|+|||||+..+.-. ... =..++||.....++.. .+++++.... ...+.++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 4689999999999999999775543 222 4677999988888743 6677765432 2345566666677
Q ss_pred HHcCC-ceEEEEeC
Q 045226 254 EALLK-KKFFDCLG 266 (266)
Q Consensus 254 ~~L~~-kr~LiVLD 266 (266)
..+.. +--|||+|
T Consensus 132 ~lv~~~~~~LVVID 145 (790)
T PRK09519 132 MLIRSGALDIVVID 145 (790)
T ss_pred HHhhcCCCeEEEEc
Confidence 66644 55678887
No 237
>PRK14528 adenylate kinase; Provisional
Probab=96.12 E-value=0.0092 Score=47.39 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+.|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998765
No 238
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.12 E-value=0.026 Score=55.26 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|.+..++.+...+..... ..+....++.++|+.|+|||+||+.+.+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4688999888888887754210 01223468889999999999999999865
No 239
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.12 E-value=0.026 Score=44.01 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=31.9
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 156 VYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++|....+.++++.+..-.. .. .-|-|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHh
Confidence 46777778888877765321 12 34559999999999999999995
No 240
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.12 E-value=0.0081 Score=48.61 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999765
No 241
>PF14516 AAA_35: AAA-like domain
Probab=96.10 E-value=0.1 Score=45.43 Aligned_cols=105 Identities=13% Similarity=0.193 Sum_probs=65.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCC-----CCHHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDD-----FDVLRIS 228 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~-----~~~~~i~ 228 (266)
+.-|.|...-+.+.+.|.... ..+.|.|+-.+|||+|...+.+..+...+.+ +++++..- .+...++
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~~~~~-v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQGYRC-VYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHCCCEE-EEEEeecCCCcccCCHHHHH
Confidence 345677766777777776543 6899999999999999999988753322443 46665431 2455555
Q ss_pred HHHHH----HhcCCCC-------CCCChHHHHHHHHHHc---CCceEEEEeC
Q 045226 229 KAILE----SITLSSC-------DLKDLNSVQLKLKEAL---LKKKFFDCLG 266 (266)
Q Consensus 229 ~~il~----~l~~~~~-------~~~~~~~~~~~l~~~L---~~kr~LiVLD 266 (266)
+.++. +++.... ...........+.++| .+++.+|+||
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iD 134 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFID 134 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEe
Confidence 55554 4443321 1122334444555543 2588999988
No 242
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.10 E-value=0.0094 Score=47.30 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 161 TEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 161 ~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+...++...... -..+.|+|..|.|||||++.+..-
T Consensus 12 ~~~~~~l~~~v~~-------g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 12 PLQAAYLWLAVEA-------RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHHHHHhC-------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 3455555555543 368999999999999999988753
No 243
>PRK14530 adenylate kinase; Provisional
Probab=96.09 E-value=0.0045 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|.|+|++|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999765
No 244
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.08 E-value=0.0042 Score=47.45 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
||.|+|.+|.||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998765
No 245
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.08 E-value=0.005 Score=47.12 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-|+++|.+|+|||||+..+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999987653
No 246
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.07 E-value=0.04 Score=45.11 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=28.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD 220 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~ 220 (266)
.-.++.|.|.+|+||||||..+.... .+.-+..+|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-LRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-HhcCCeEEEEEccC
Confidence 35899999999999999998765432 11234567777643
No 247
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.0085 Score=54.61 Aligned_cols=45 Identities=29% Similarity=0.299 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+++|-+.-++.|.+.+..+.- ..-+-++|+.|+||||+|+.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri-----~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKI-----PQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCccHHHHHHHHHH
Confidence 4789999888888888765542 35788999999999999988764
No 248
>PRK13695 putative NTPase; Provisional
Probab=96.07 E-value=0.005 Score=48.23 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.|+|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987653
No 249
>PRK06620 hypothetical protein; Validated
Probab=96.06 E-value=0.0051 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..+-|+|+.|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 578999999999999999987763
No 250
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.05 E-value=0.011 Score=45.54 Aligned_cols=36 Identities=17% Similarity=0.405 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 161 TEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 161 ~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..+++|.++|.. +++.++|..|+|||||...+....
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456788888753 689999999999999999998873
No 251
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.0093 Score=55.61 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+..++.|.+++..+.- ...+-++|+.|+||||+|+.+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~-----~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRI-----NHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999876542 467889999999999999988765
No 252
>COG4240 Predicted kinase [General function prediction only]
Probab=96.04 E-value=0.049 Score=44.21 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=48.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcC-----CCCCCCChHHHHHHHHH
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITL-----SSCDLKDLNSVQLKLKE 254 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~-----~~~~~~~~~~~~~~l~~ 254 (266)
..-+++|.|+.|.|||||+..+++....+.-+..+..++..-+=...=.-.++++... ..+...|..-+.+.|..
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLna 128 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLNA 128 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHHH
Confidence 3679999999999999999999998543332355555544433222222334444311 11244566666666666
Q ss_pred HcCCc
Q 045226 255 ALLKK 259 (266)
Q Consensus 255 ~L~~k 259 (266)
..+++
T Consensus 129 i~~g~ 133 (300)
T COG4240 129 IARGG 133 (300)
T ss_pred HhcCC
Confidence 66554
No 253
>PRK04328 hypothetical protein; Provisional
Probab=96.04 E-value=0.022 Score=47.46 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=30.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCC
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDD 221 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~ 221 (266)
.-+++-|.|.+|.|||+|+.++.... .+.-+..+||+....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HhcCCcEEEEEeeCC
Confidence 45899999999999999998754431 222456788887663
No 254
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.04 E-value=0.0063 Score=48.80 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999999999876
No 255
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.04 E-value=0.0059 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|+|||||.+.++.-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 479999999999999999999874
No 256
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.01 Score=52.32 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.+.+++..+.. ...+-++|+.|+||||+|+.+.+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~-----~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHL-----AQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999876542 468889999999999999998765
No 257
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.03 E-value=0.0052 Score=48.14 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..|.|+|+.|.|||||++.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999999876
No 258
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.03 E-value=0.0097 Score=54.56 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+.-+..|...+..+. -..-+-++|+.|+||||+|+.+.+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 468999988888888776544 2467889999999999999999765
No 259
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.03 E-value=0.0089 Score=55.96 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=38.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+++..+.. ..-+-++|+.|+||||+|+.+.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri-----~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRI-----AQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999876542 457889999999999999998765
No 260
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.02 E-value=0.026 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|.|..|.||||+|..+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 36899999999999999988755
No 261
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.02 E-value=0.022 Score=47.61 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|+|.|..|.||||+++.+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~ 22 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI 22 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 262
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.02 E-value=0.0093 Score=55.17 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|.|+.|.||||||+.+...
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhh
Confidence 4789999999999999999999865
No 263
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.0056 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
--.++|+|+.|+|||||.+.|..
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999864
No 264
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.00 E-value=0.038 Score=54.23 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=39.0
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|.+..++.+...+..... ..+....++.++|+.|+|||+||+.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~ 618 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF 618 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999888865211 01223567889999999999999999875
No 265
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.00 E-value=0.029 Score=46.14 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=30.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAI 231 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 231 (266)
-.++.|.|..|+||||||.++.... .+.=..+++++ ..-+..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNGYSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEEe--CCCCHHHHHHHH
Confidence 4699999999999999985544432 12212345555 333556666665
No 266
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.99 E-value=0.0053 Score=48.80 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998774
No 267
>PLN02348 phosphoribulokinase
Probab=95.99 E-value=0.0097 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-+|+|.|..|.||||||+.+.+.
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998875
No 268
>PRK08181 transposase; Validated
Probab=95.99 E-value=0.018 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.-+-++|+.|+|||.||..+.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~ 129 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA 129 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 35899999999999999999875
No 269
>CHL00176 ftsH cell division protein; Validated
Probab=95.99 E-value=0.02 Score=54.10 Aligned_cols=52 Identities=27% Similarity=0.364 Sum_probs=34.3
Q ss_pred CccccchhhHHH---HHHHHhcCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKAR---VLDMVLKNDP---CDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.++.|.+..++. ++.+|..... -+....+-+-++|++|+|||+||+.+.+..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467887655544 4444443221 011224568899999999999999998863
No 270
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.98 E-value=0.025 Score=51.14 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=52.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCC-HHHHHHHHHHHhcCCCC----CCCCh--------HH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFD-VLRISKAILESITLSSC----DLKDL--------NS 247 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~il~~l~~~~~----~~~~~--------~~ 247 (266)
-.-++|.|..|+|||||+..+.+......-+.++++-+.+..+ ..++..+++..-..... ...|. ..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 4679999999999999998877663221257778887776543 34455555443211110 11111 12
Q ss_pred HHHHHHHHc---CCceEEEEeC
Q 045226 248 VQLKLKEAL---LKKKFFDCLG 266 (266)
Q Consensus 248 ~~~~l~~~L---~~kr~LiVLD 266 (266)
.+..+-+++ ++|.+||++|
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~D 244 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFID 244 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEec
Confidence 333455665 3899999998
No 271
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.97 E-value=0.035 Score=47.71 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=36.9
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEec
Q 045226 158 GRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVS 219 (266)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs 219 (266)
++........+++..-.. +....-+-++|..|+|||.||..+.+... +.=-.+.+++++
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~ 193 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFP 193 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHH
Confidence 344444555666654221 12345788999999999999999999853 222234556554
No 272
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.97 E-value=0.0058 Score=45.12 Aligned_cols=21 Identities=43% Similarity=0.689 Sum_probs=16.1
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
+-|+|..|+||||||+.+...
T Consensus 2 vLleg~PG~GKT~la~~lA~~ 22 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS 22 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH
T ss_pred EeeECCCccHHHHHHHHHHHH
Confidence 468999999999999999876
No 273
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.96 E-value=0.017 Score=42.53 Aligned_cols=47 Identities=15% Similarity=0.321 Sum_probs=32.7
Q ss_pred ccccchhhHHHHHHHH----hcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 155 AVYGRDTEKARVLDMV----LKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L----~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|-.-..+.+++.| ... ...+.-|++..|..|+|||.+++.+.+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4666654455455444 332 2456789999999999999988877665
No 274
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.96 E-value=0.026 Score=53.16 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=49.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILE 233 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 233 (266)
.+++|.+..++.+...+.... -+-++|+.|+||||||+.+.+...-..|...+++.-+. .+...+++.++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--------~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~-~~~~~~~~~v~~ 88 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--------NVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPE-DPNMPRIVEVPA 88 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--------CEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCC-CCchHHHHHHHH
Confidence 467888877777666665431 34489999999999999999763222244444333332 245566788877
Q ss_pred HhcCC
Q 045226 234 SITLS 238 (266)
Q Consensus 234 ~l~~~ 238 (266)
.++..
T Consensus 89 ~~g~~ 93 (608)
T TIGR00764 89 GEGRE 93 (608)
T ss_pred hhchH
Confidence 66643
No 275
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.96 E-value=0.014 Score=49.66 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-+-++|++|+||||+|+.+...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999776654
No 276
>PLN02796 D-glycerate 3-kinase
Probab=95.96 E-value=0.007 Score=52.43 Aligned_cols=26 Identities=31% Similarity=0.178 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..-+|+|.|..|.|||||++.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 46799999999999999999998763
No 277
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.96 E-value=0.0076 Score=43.67 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 278
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.95 E-value=0.0063 Score=47.87 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.++.|+|+.|.|||||++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998763
No 279
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.94 E-value=0.0063 Score=49.44 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 368999999999999999999765
No 280
>PRK14529 adenylate kinase; Provisional
Probab=95.93 E-value=0.017 Score=47.24 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
|.|.|++|+||||+|+.+....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999887653
No 281
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.93 E-value=0.049 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..-+-|+|+.|+|||+|++.+.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999884
No 282
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.92 E-value=0.0056 Score=47.38 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.6
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 283
>PRK08356 hypothetical protein; Provisional
Probab=95.92 E-value=0.0083 Score=47.99 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~ 202 (266)
..+|.|+|+.|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999993
No 284
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.018 Score=48.08 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKR 206 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~ 206 (266)
..-+.++|.+|+|||.||.++.+..-
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 46789999999999999999999864
No 285
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.91 E-value=0.018 Score=46.96 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|+|.|+.|.||||+|+.+...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEK 25 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999865
No 286
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.91 E-value=0.0067 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988765
No 287
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.91 E-value=0.0087 Score=48.11 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=26.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEE
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVC 217 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~ 217 (266)
-.|++|+|+.|.|||||.+.+..=+.. =...+||.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEEC
Confidence 469999999999999999999875332 23555554
No 288
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.91 E-value=0.0061 Score=47.56 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
|.|.|..|+|||||.+.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999988764
No 289
>PRK09087 hypothetical protein; Validated
Probab=95.91 E-value=0.0065 Score=49.85 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-..+.|||+.|+|||+|++.++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999998865
No 290
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.012 Score=55.20 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+.-+..|.+++..+.- ..-+-++|+.|+||||+|+.+.+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri-----~ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRV-----GHGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeeEEEECCCCCCHHHHHHHHHHH
Confidence 4789999888888888876542 456889999999999999887654
No 291
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.90 E-value=0.028 Score=54.95 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|.+..++.+.+.+..... ..+..+.++.++|+.|+|||.||+.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999988854210 01334678999999999999999887654
No 292
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.90 E-value=0.0056 Score=51.72 Aligned_cols=22 Identities=50% Similarity=0.773 Sum_probs=18.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
+.|+|.|-||+||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4689999999999998877654
No 293
>PLN02200 adenylate kinase family protein
Probab=95.90 E-value=0.0067 Score=50.04 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|.|.|++|+||||+|+.+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998765
No 294
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.90 E-value=0.0068 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999865
No 295
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.90 E-value=0.0067 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988754
No 296
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.90 E-value=0.0085 Score=51.72 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+|+++|+.|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999887654
No 297
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.89 E-value=0.079 Score=44.54 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=32.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAIL 232 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 232 (266)
-.++.|.|.+|+|||||+.++......+.=..++|++... +...+...++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~--~~~~~~~r~~ 79 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE--PVVRTARRLL 79 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc--CHHHHHHHHH
Confidence 4588899999999999999876653211113566777654 3344444443
No 298
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.88 E-value=0.0074 Score=45.53 Aligned_cols=24 Identities=46% Similarity=0.682 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
+-|.++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999998764
No 299
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.88 E-value=0.0077 Score=46.53 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|+|..|+|||||+..+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999988763
No 300
>PRK04182 cytidylate kinase; Provisional
Probab=95.87 E-value=0.0067 Score=47.48 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 301
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.86 E-value=0.013 Score=52.19 Aligned_cols=51 Identities=27% Similarity=0.303 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLK----ND---PCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|.+..+++|.+.+.. .+ .-+-...+-+-++|++|+|||+||+.+.+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4688998888877776531 10 001123567889999999999999999986
No 302
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.86 E-value=0.0073 Score=46.36 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
|.++|.+|+|||||+..+.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999887653
No 303
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.85 E-value=0.017 Score=47.90 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 162 EKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
....+++.|.... .+..+|+|.|++|+||+||...+-...
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 4556777776543 246799999999999999998876553
No 304
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.85 E-value=0.007 Score=51.08 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
++|+|+|..|+|||||+..+....
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999987763
No 305
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.85 E-value=0.027 Score=45.79 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=34.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCC-CHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDF-DVLRISKAIL 232 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~il 232 (266)
-.-++|.|..|+|||+|+..+.+... =+..+++-+.+.. ...++.+++.
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~---~d~~V~~~iGer~~Ev~~~~~~~~ 64 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD---ADVVVYALIGERGREVTEFIEELK 64 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT---TTEEEEEEESECHHHHHHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc---ccceeeeeccccchhHHHHHHHHh
Confidence 36899999999999999999988742 2344777777653 3444555543
No 306
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.057 Score=50.60 Aligned_cols=47 Identities=28% Similarity=0.297 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|-+..+..|.+.+..+. -...+-++|+.|+||||+|+.+.+..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhc
Confidence 367898888888888876543 14678889999999999999887653
No 307
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.84 E-value=0.007 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|+|+|..|+|||||.+.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456999999999999999999885
No 308
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.84 E-value=0.0073 Score=49.01 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999875
No 309
>PRK08149 ATP synthase SpaL; Validated
Probab=95.84 E-value=0.056 Score=48.44 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=49.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCC-CCHHHHHHHHHHHhcCCCC-------CCCCh-----HH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDD-FDVLRISKAILESITLSSC-------DLKDL-----NS 247 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~il~~l~~~~~-------~~~~~-----~~ 247 (266)
-..++|+|..|+|||||++.+.+... -+..+...+... -+..++..+.+........ +.... ..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 46899999999999999999987632 233334444443 3455666666654332211 11111 12
Q ss_pred HHHHHHHHc--CCceEEEEeC
Q 045226 248 VQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 248 ~~~~l~~~L--~~kr~LiVLD 266 (266)
.+..+-+++ ++|++||++|
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~D 248 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFID 248 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEcc
Confidence 233344444 6899999998
No 310
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.068 Score=45.96 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=53.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC--------------------CCceE
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED--------------------FKPKA 214 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~--------------------F~~~~ 214 (266)
+++|-+.....+..|...... ...-+-+.|+.|+||||+|..+.+..--.. ..-..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 467778888888888875331 123588999999999999998876532100 13455
Q ss_pred EEEecCCCC---HHHHHHHHHHHhcCC
Q 045226 215 WVCVSDDFD---VLRISKAILESITLS 238 (266)
Q Consensus 215 wv~vs~~~~---~~~i~~~il~~l~~~ 238 (266)
.++-|.... ..+..+++.+.....
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~ 104 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSES 104 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccC
Confidence 666666555 466677777766544
No 311
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.019 Score=49.59 Aligned_cols=52 Identities=25% Similarity=0.231 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDP-------CDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.++-|.+..+++|.+...-+-. =+-..++=|-.+|++|.|||-||++|.|+.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 4567888888877776432110 012346778899999999999999999983
No 312
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.83 E-value=0.0073 Score=46.59 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|++|+|+.|.|||||...+-..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 479999999999999999998543
No 313
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.83 E-value=0.0077 Score=47.86 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||.+.+..-
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998864
No 314
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.82 E-value=0.0091 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|+++|..|+|||||.+.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998665
No 315
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.008 Score=47.28 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999754
No 316
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.82 E-value=0.05 Score=48.69 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=46.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC-CCCHHHHHHHHHHHhcCCCC-------CCCChH-----H
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD-DFDVLRISKAILESITLSSC-------DLKDLN-----S 247 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~il~~l~~~~~-------~~~~~~-----~ 247 (266)
-..++|+|..|+|||||++.+..... .....+ +.+.. .-...++.++.+..-..... +..... .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~--~~~gvi-~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD--ADVVVI-ALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC--CCEEEE-EEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999987632 222222 33333 33344455554433221111 111111 1
Q ss_pred HHHHHHHHc--CCceEEEEeC
Q 045226 248 VQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 248 ~~~~l~~~L--~~kr~LiVLD 266 (266)
.+-.+-+++ +++.+||++|
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~D 237 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMD 237 (418)
T ss_pred HHHHHHHHHHHcCCCEEEecc
Confidence 223345555 6899999998
No 317
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.81 E-value=0.011 Score=47.40 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|+|+.|.||||++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999976554
No 318
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.80 E-value=0.0073 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++|+|+|-|||||||+|-.+..-
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~ 24 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAA 24 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999988776543
No 319
>PRK14526 adenylate kinase; Provisional
Probab=95.79 E-value=0.011 Score=47.96 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.|+|+.|+||||+|+.+...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~ 23 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNE 23 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998754
No 320
>PRK06761 hypothetical protein; Provisional
Probab=95.79 E-value=0.01 Score=50.17 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKR 206 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~ 206 (266)
.+|.|.|+.|+|||||++.+.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998753
No 321
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.018 Score=50.38 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=39.3
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 152 SEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.-..++|-+.....+...+..+.. ..-+-|+|+.|+||||||..+...
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl-----~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKL-----HHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCC-----CeeEeeECCCCCCHHHHHHHHHHH
Confidence 345789999999999998876542 567899999999999999877654
No 322
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.78 E-value=0.016 Score=45.90 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+.|.|+|+.|+||+||+..+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999887
No 323
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.77 E-value=0.0079 Score=45.47 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999876
No 324
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.0092 Score=48.39 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
. .+++|+|..|.|||||++.+..-
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCC
Confidence 5 79999999999999999999765
No 325
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.76 E-value=0.015 Score=52.30 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDP-------CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|.+..+++|.+.+.-.-. -+-....-+.++|+.|+|||+||+.+.+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4678899888888776632100 01123456778999999999999999987
No 326
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.76 E-value=0.067 Score=42.37 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=27.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccC-C-C-------ceEEEEecCC
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVED-F-K-------PKAWVCVSDD 221 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F-~-------~~~wv~vs~~ 221 (266)
.+.-|.|++|+||||++..+........ | . .++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5889999999999999988877654433 4 2 5567765554
No 327
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.76 E-value=0.0084 Score=45.92 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999987543
No 328
>PRK13768 GTPase; Provisional
Probab=95.76 E-value=0.0085 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|+|+||+||||++..+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 58899999999999988776543
No 329
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.0083 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999865
No 330
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.75 E-value=0.0075 Score=50.90 Aligned_cols=22 Identities=50% Similarity=0.758 Sum_probs=18.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
++|+|+|-|||||||++..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999998877654
No 331
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.74 E-value=0.054 Score=45.51 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=53.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccc--cC-CCceEEEEecCCCC-HHHHHHHHHHHhcCCCC-------CCCChH---
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRV--ED-FKPKAWVCVSDDFD-VLRISKAILESITLSSC-------DLKDLN--- 246 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~--~~-F~~~~wv~vs~~~~-~~~i~~~il~~l~~~~~-------~~~~~~--- 246 (266)
-.-++|.|-.|+|||+|+..+.++... +. -+.++++-+.+... ..++..++...-..... +.....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 357899999999999999988877431 22 57888999888754 44555555543211110 111111
Q ss_pred --HHHHHHHHHc---CCceEEEEeC
Q 045226 247 --SVQLKLKEAL---LKKKFFDCLG 266 (266)
Q Consensus 247 --~~~~~l~~~L---~~kr~LiVLD 266 (266)
...-.+-+++ .+|++|+++|
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D 173 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILT 173 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEc
Confidence 1223355555 3789999998
No 332
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.74 E-value=0.0086 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999865
No 333
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.74 E-value=0.0053 Score=53.21 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=26.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEec
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVS 219 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs 219 (266)
.-+-++|..|+|||+||..+.+... ..-..+++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEEHH
Confidence 5699999999999999999988642 222244555543
No 334
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.74 E-value=0.06 Score=48.32 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=32.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCC
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFD 223 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~ 223 (266)
-..++|.|..|+|||||.+.+++... -++++.+-+.+..+
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~---~dv~V~~liGERgr 201 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE---VDVTVLALIGERGR 201 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC---CCEEEEEEEccCcH
Confidence 45799999999999999999998732 45677777777654
No 335
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.73 E-value=0.0085 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.420 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999998764
No 336
>PRK13946 shikimate kinase; Provisional
Probab=95.73 E-value=0.0074 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+.|.++|+.|+||||+++.+....
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998763
No 337
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.73 E-value=0.0091 Score=47.95 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
..+|+|+|+.|+||||.|+..-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 338
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.73 E-value=0.056 Score=48.51 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=48.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCC-CHHHHHHHHHHHhcCCC-------CCCCChH-----H
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDF-DVLRISKAILESITLSS-------CDLKDLN-----S 247 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~il~~l~~~~-------~~~~~~~-----~ 247 (266)
-..++|+|..|+|||||++.+.+... .+..+++.+.+.. ...+++.+....-.... .+....+ .
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999987632 4455666665543 34355555432110000 0111111 1
Q ss_pred HHHHHHHHc--CCceEEEEeC
Q 045226 248 VQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 248 ~~~~l~~~L--~~kr~LiVLD 266 (266)
..-.+-+++ ++|++||++|
T Consensus 232 ~a~tiAEyfrd~G~~VLl~~D 252 (433)
T PRK07594 232 VATTIAEFFRDNGKRVVLLAD 252 (433)
T ss_pred HHHHHHHHHHHCCCcEEEEEe
Confidence 222344444 6899999998
No 339
>PRK05922 type III secretion system ATPase; Validated
Probab=95.73 E-value=0.07 Score=47.87 Aligned_cols=83 Identities=10% Similarity=0.109 Sum_probs=47.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCC-CCHHHHHHHHHHHhcCCCC----CCCC---hH-----H
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDD-FDVLRISKAILESITLSSC----DLKD---LN-----S 247 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~il~~l~~~~~----~~~~---~~-----~ 247 (266)
-..++|+|..|+|||||.+.+.+... .+..+.+-+... ....+++.+.......... ...| .. .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK---STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC---CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 35699999999999999999987632 233333334332 2334455454433322211 1111 11 1
Q ss_pred HHHHHHHHc--CCceEEEEeC
Q 045226 248 VQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 248 ~~~~l~~~L--~~kr~LiVLD 266 (266)
..-.+-+++ +++++||++|
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~D 254 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMD 254 (434)
T ss_pred HHHHHHHHHHHcCCCEEEecc
Confidence 223345555 6899999998
No 340
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.72 E-value=0.014 Score=54.05 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+++|.+..++.+...+.... ..-+-|+|..|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999998888775543 234568999999999999999864
No 341
>PLN02165 adenylate isopentenyltransferase
Probab=95.72 E-value=0.0095 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|+|+|+.|+||||||..+...
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 459999999999999999998876
No 342
>PLN02924 thymidylate kinase
Probab=95.71 E-value=0.035 Score=45.36 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=34.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILE 233 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 233 (266)
...|+|-|..|+||||+++.+........+....+=.-.......+.+++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHh
Confidence 46899999999999999999998855433544333222222334445555554
No 343
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.71 E-value=0.027 Score=46.18 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+|+|.|+.|+||||+|+.+....
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998763
No 344
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.009 Score=48.66 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999875
No 345
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.70 E-value=0.0091 Score=46.33 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999775
No 346
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.70 E-value=0.0092 Score=48.34 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999765
No 347
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.70 E-value=0.0094 Score=44.78 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-|+++|..|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988765
No 348
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.70 E-value=0.081 Score=48.30 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=37.8
Q ss_pred cEEEEEEecCCCcHHHHH-HHHHccccc-----cC-CCceEEEEecCCCCHHHHHHHHHHHh
Q 045226 181 FRVIALVGMGGIGKTTLA-QEVYNDKRV-----ED-FKPKAWVCVSDDFDVLRISKAILESI 235 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA-~~v~~~~~~-----~~-F~~~~wv~vs~~~~~~~i~~~il~~l 235 (266)
-.-++|.|-.|+|||+|| ..+.|+..+ .. -+.++++-+.+..+...-+.+.++.-
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~ 250 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSY 250 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhc
Confidence 356899999999999997 666766432 13 46788899998765544344444443
No 349
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.009 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999754
No 350
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.0093 Score=48.17 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999875
No 351
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.69 E-value=0.0095 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 352
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.69 E-value=0.0095 Score=45.60 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
|.++|.+|+|||||.+.+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999997653
No 353
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.69 E-value=0.009 Score=44.77 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|.|+|.+|+|||||...+.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999998765
No 354
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.68 E-value=0.017 Score=51.42 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCCC----CCCCcEEEEEEecCCCcHHHHHHHHHc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPC----DAANFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+++|-+.-++.|.+++..+... ...-..-+-++|+.|+|||++|..+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 36889898899999998764310 011246688999999999999988754
No 355
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.68 E-value=0.01 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
-.+++|+|+.|.|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999864
No 356
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.68 E-value=0.0098 Score=48.45 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
-..++|+|+.|.|||||...+..
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 357
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.68 E-value=0.0083 Score=45.78 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+++++|.+|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999988765
No 358
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.67 E-value=0.0089 Score=50.21 Aligned_cols=23 Identities=48% Similarity=0.720 Sum_probs=19.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++|+|.|-||+||||++-.+..-
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~ 24 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAA 24 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHH
Confidence 57889999999999988776543
No 359
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.67 E-value=0.07 Score=44.07 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+-.|+|++|+|||+||..+.-..
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHH
Confidence 366789999999999999887653
No 360
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.67 E-value=0.0098 Score=47.52 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 359999999999999999999875
No 361
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.0096 Score=48.21 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999764
No 362
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.66 E-value=0.0095 Score=45.39 Aligned_cols=22 Identities=32% Similarity=0.741 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|.|+|.+|+|||||.+.+.+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999888764
No 363
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.66 E-value=0.0097 Score=45.86 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-|.|+|.+|+|||||+..+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Confidence 356889999999999999887653
No 364
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.66 E-value=0.015 Score=50.80 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=36.5
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 152 SEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+-..++|-+.-+..|+..+.++. +.-+-|.|..|+||||+|+.+++-
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~------~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPK------IGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCC------CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 33578999987777777766543 455669999999999999999654
No 365
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.66 E-value=0.0087 Score=41.31 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=27.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccccc---c-C-CCceEEEEecCCCCH
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDKRV---E-D-FKPKAWVCVSDDFDV 224 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~~~---~-~-F~~~~wv~vs~~~~~ 224 (266)
++.+.|.+|+||||++..+...... + - ++-.+-+..+...+.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d~iivD~~~~~~~ 47 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDDYVLIDTPPGLGL 47 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECCEEEEeCCCCccc
Confidence 4788999999999999888765321 1 1 444444455544443
No 366
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.65 E-value=0.0098 Score=48.67 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 369999999999999999998764
No 367
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.65 E-value=0.014 Score=57.07 Aligned_cols=48 Identities=33% Similarity=0.498 Sum_probs=39.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.++||+.+.+.|.+.+..-. ...-.++.+.|..|||||+|++.|..-.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~i 48 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKPI 48 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHHH
Confidence 36899999999999887633 2234699999999999999999998763
No 368
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.64 E-value=0.0078 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|+|.|..|+|||||++.+..-
T Consensus 1 iigI~G~sGsGKSTl~~~L~~l 22 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSL 22 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999864
No 369
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.0089 Score=48.34 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+++|+|+.|.|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999864
No 370
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.63 E-value=0.0093 Score=48.28 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 368999999999999999999775
No 371
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.63 E-value=0.01 Score=48.64 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 369999999999999999999865
No 372
>PRK13948 shikimate kinase; Provisional
Probab=95.63 E-value=0.01 Score=46.96 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+.|.++||.|+||||+++.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999876
No 373
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.63 E-value=0.029 Score=45.75 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=30.3
Q ss_pred cccch-hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 156 VYGRD-TEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 156 ~vGr~-~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
++|.. ...-.....+.... +.....+-|+|..|+|||.|.+.+++..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45653 33334444454443 1234457899999999999999999874
No 374
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.63 E-value=0.069 Score=48.27 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=51.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCC-HHHHHHHHHHHhcCCCC-------CCCChH-----H
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFD-VLRISKAILESITLSSC-------DLKDLN-----S 247 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~il~~l~~~~~-------~~~~~~-----~ 247 (266)
-.-++|.|..|+|||||+..+........=+.++++-+.+... +.+++++++..-..... +..... .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4679999999999999999876552211113567777776543 44555555543211110 111111 2
Q ss_pred HHHHHHHHc---CCceEEEEeC
Q 045226 248 VQLKLKEAL---LKKKFFDCLG 266 (266)
Q Consensus 248 ~~~~l~~~L---~~kr~LiVLD 266 (266)
..-.+-+++ ++|.+||++|
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~D 245 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFID 245 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEec
Confidence 233466666 7799999998
No 375
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.63 E-value=0.011 Score=45.33 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=19.4
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
|.++|.+|+|||||...+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6899999999999999887753
No 376
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.62 E-value=0.0091 Score=48.40 Aligned_cols=22 Identities=50% Similarity=0.765 Sum_probs=18.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999998766544
No 377
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.62 E-value=0.01 Score=47.78 Aligned_cols=24 Identities=46% Similarity=0.502 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 369999999999999999999875
No 378
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.62 E-value=0.074 Score=47.94 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=47.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCC-CHHHHHHHHHHHhcCCCC-------CCCChH-----H
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDF-DVLRISKAILESITLSSC-------DLKDLN-----S 247 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~il~~l~~~~~-------~~~~~~-----~ 247 (266)
-..++|+|..|+|||||++.+.... ..+..+...+.... +...+...+...-..... +..... .
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~---~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~ 244 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT---EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAM 244 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHH
Confidence 3579999999999999999998752 13344444454433 344444444433222111 111111 1
Q ss_pred HHHHHHHHc--CCceEEEEeC
Q 045226 248 VQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 248 ~~~~l~~~L--~~kr~LiVLD 266 (266)
....+-+++ ++|++||++|
T Consensus 245 ~a~aiAEyfrd~G~~VLl~~D 265 (451)
T PRK05688 245 YCTRIAEYFRDKGKNVLLLMD 265 (451)
T ss_pred HHHHHHHHHHHCCCCEEEEec
Confidence 222344444 6899999998
No 379
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.62 E-value=0.089 Score=45.50 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=47.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC-CCCHHHHHHHHHHHhcCCCC-------CCCChH-----H
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD-DFDVLRISKAILESITLSSC-------DLKDLN-----S 247 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~il~~l~~~~~-------~~~~~~-----~ 247 (266)
-..++|+|..|+|||||.+.+.+... -++.+..-+.. .-+..++....+..-..... +..... .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT---ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 36789999999999999999987632 12333344443 33455555555543221110 111111 1
Q ss_pred HHHHHHHHc--CCceEEEEeC
Q 045226 248 VQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 248 ~~~~l~~~L--~~kr~LiVLD 266 (266)
..-.+-+++ ++|.+||++|
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~D 166 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMD 166 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEec
Confidence 222333443 6899999998
No 380
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.01 Score=49.07 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999865
No 381
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.62 E-value=0.01 Score=48.03 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999875
No 382
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.61 E-value=0.061 Score=45.09 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=28.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD 220 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~ 220 (266)
.-+++-|.|.+|+|||+||.++.... .+.=+.+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-ASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HhCCCcEEEEEecC
Confidence 46899999999999999998864431 11124667777654
No 383
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.61 E-value=0.01 Score=45.07 Aligned_cols=21 Identities=24% Similarity=0.699 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.|+|+.|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988653
No 384
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.61 E-value=0.0088 Score=53.27 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+.|+|+|..|.|||||++.+...
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998876
No 385
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.60 E-value=0.01 Score=48.87 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999864
No 386
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.60 E-value=0.011 Score=44.69 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
|.++|..|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999987653
No 387
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.59 E-value=0.0077 Score=49.80 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=17.6
Q ss_pred EEecCCCcHHHHHHHHHccc
Q 045226 186 LVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 186 IvG~gGvGKTtLA~~v~~~~ 205 (266)
|+||+|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999998874
No 388
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.59 E-value=0.051 Score=45.64 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=33.0
Q ss_pred cEEEEEEecCCCcHHHHH-HHHHccccccCCCce-EEEEecCCCC-HHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLA-QEVYNDKRVEDFKPK-AWVCVSDDFD-VLRISKAILE 233 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA-~~v~~~~~~~~F~~~-~wv~vs~~~~-~~~i~~~il~ 233 (266)
-.-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+... ..++.+++.+
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~---~~~v~~V~~~iGer~~ev~e~~~~~~~ 121 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK---GKKVYCIYVAIGQKASTVAQVVKTLEE 121 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc---CCCeEEEEEecccchHHHHHHHHHHHh
Confidence 357999999999999995 6666542 13444 6666766643 4455555554
No 389
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.58 E-value=0.072 Score=47.97 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=46.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC-CCCHHHHHHHHHHHhcCCCC----CCCC---hH-----H
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD-DFDVLRISKAILESITLSSC----DLKD---LN-----S 247 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~il~~l~~~~~----~~~~---~~-----~ 247 (266)
-..++|.|..|+|||||++.+..... -+..+.+-+.+ .....++.+.+...-..... ...| .. .
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999987632 22233333343 33444444444433211110 1111 11 1
Q ss_pred HHHHHHHHc--CCceEEEEeC
Q 045226 248 VQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 248 ~~~~l~~~L--~~kr~LiVLD 266 (266)
..-.+-+++ ++|.+||++|
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~D 260 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMD 260 (441)
T ss_pred HHHHHHHHHHHcCCCEEEecc
Confidence 222344444 5899999998
No 390
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.58 E-value=0.011 Score=46.82 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..|+|+|++|+|||||...+.+.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45599999999999999998864
No 391
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.58 E-value=0.022 Score=49.61 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=34.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
..++|.+..+..++-.+..+. +.-+.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~------~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK------IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC------CCeEEEEcCCCCCHHHHHHHHHH
Confidence 367898888888766666543 34566999999999999999863
No 392
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.58 E-value=0.024 Score=49.19 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 164 ARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 164 ~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..|++.+... ..+..+|+|.|.+|+|||||+..+...
T Consensus 43 ~~l~~~~~~~----~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 43 QELLDALLPH----TGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHhhc----CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555432 124689999999999999999987655
No 393
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.58 E-value=0.011 Score=45.52 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.0
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999876543
No 394
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.58 E-value=0.023 Score=45.47 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
++..|.|.+|.||||++..+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHH
Confidence 688889999999999999987653
No 395
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.57 E-value=0.0085 Score=49.88 Aligned_cols=22 Identities=36% Similarity=0.748 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999998765
No 396
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.57 E-value=0.017 Score=53.21 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=41.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEE
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVC 217 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~ 217 (266)
++.--..-++++..||...-. +....+++-+.|++|+||||.++.+.+... |+.+=|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~elg---~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKELG---FEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHhC---CeeEEecC
Confidence 344445667888888875322 122356999999999999999999987621 66666764
No 397
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.011 Score=48.12 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999865
No 398
>PRK01184 hypothetical protein; Provisional
Probab=95.56 E-value=0.011 Score=46.72 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=17.1
Q ss_pred EEEEEEecCCCcHHHHHHH
Q 045226 182 RVIALVGMGGIGKTTLAQE 200 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~ 200 (266)
.+|+|+|+.|+||||+|+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4899999999999999973
No 399
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.56 E-value=0.012 Score=47.92 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999765
No 400
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.56 E-value=0.02 Score=51.94 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+..+..|.+++..+.. ...+-++|+.|+||||+|+.+.+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i-----~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRA-----AHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999876542 467888999999999999888654
No 401
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.55 E-value=0.01 Score=46.21 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..|.|+|+.|+||||+|+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35888999999999999999876
No 402
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.55 E-value=0.023 Score=48.18 Aligned_cols=25 Identities=40% Similarity=0.404 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..++.|+|..|.|||||...+.+.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999998876
No 403
>PRK09183 transposase/IS protein; Provisional
Probab=95.55 E-value=0.011 Score=49.66 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+.|+|+.|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999665
No 404
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.54 E-value=0.093 Score=43.24 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=31.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAIL 232 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 232 (266)
-.++.|.|.+|+|||+++..+..+.-.+.=..++|++.-. +..++...++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC--CHHHHHHHHH
Confidence 4699999999999999998876553222112456665443 3344444443
No 405
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.54 E-value=0.012 Score=47.99 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999998754
No 406
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.54 E-value=0.014 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.195 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-+|+|.|..|.|||||++.+..-
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~l 235 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYL 235 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998654
No 407
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.54 E-value=0.013 Score=50.22 Aligned_cols=25 Identities=48% Similarity=0.728 Sum_probs=20.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHc
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+.+||++.|-|||||||+|-.+..
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHH
Confidence 3579999999999999998766543
No 408
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.53 E-value=0.011 Score=49.99 Aligned_cols=21 Identities=52% Similarity=0.762 Sum_probs=18.2
Q ss_pred EEEEEEecCCCcHHHHHHHHH
Q 045226 182 RVIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~ 202 (266)
++|+|+|-|||||||+|..+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA 23 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTA 23 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHH
Confidence 689999999999999987643
No 409
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.53 E-value=0.012 Score=47.46 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||.+.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999865
No 410
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.53 E-value=0.011 Score=48.28 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999765
No 411
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.028 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.-|+|+|..|+|||||++.+..
T Consensus 365 EkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999985
No 412
>COG3903 Predicted ATPase [General function prediction only]
Probab=95.52 E-value=0.014 Score=51.18 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=49.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEE-ecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcC
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVC-VSDDFDVLRISKAILESITLSSCDLKDLNSVQLKLKEALL 257 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~-vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 257 (266)
..+.+.++|.|||||||++-.+-+ +.. |.--.|.. ...-.+...+.-.....++....+ -+.-...+...+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 368999999999999999999988 455 86544444 444334433333333335443221 1223334555666
Q ss_pred CceEEEEeC
Q 045226 258 KKKFFDCLG 266 (266)
Q Consensus 258 ~kr~LiVLD 266 (266)
++|.++|+|
T Consensus 87 ~rr~llvld 95 (414)
T COG3903 87 DRRALLVLD 95 (414)
T ss_pred hhhHHHHhc
Confidence 777777776
No 413
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.52 E-value=0.0095 Score=46.95 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 045226 183 VIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~ 203 (266)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 414
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.52 E-value=0.02 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|+|++|+|||||+..+...
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999887654
No 415
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.52 E-value=0.012 Score=47.69 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999875
No 416
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.52 E-value=0.012 Score=45.09 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=18.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|.|+|.+|+|||||+....+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999876643
No 417
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.52 E-value=0.012 Score=48.20 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999875
No 418
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.51 E-value=0.022 Score=52.12 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|-+.-+..|.+++..+.. ...+-++|+.|+||||+|+.+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i-----~hayLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRV-----SHAYIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999999976542 456778999999999999987654
No 419
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.012 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999765
No 420
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.51 E-value=0.061 Score=52.64 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|-+..++.|.+.+..... ..+....++-++|+.|+|||+||+.+.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~ 562 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY 562 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 4688999888888887753210 01233567778999999999999988754
No 421
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.51 E-value=0.012 Score=49.01 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|..|+|||||++.+....
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999998763
No 422
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.51 E-value=0.013 Score=47.05 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...|+|+|.+|+|||||.+.+.+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch
Confidence 5799999999999999999988763
No 423
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.49 E-value=0.012 Score=48.39 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999865
No 424
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=95.49 E-value=0.012 Score=44.79 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|+|+|.+|+|||||...+.+.
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999887765
No 425
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.49 E-value=0.04 Score=47.84 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=45.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHH
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISK 229 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 229 (266)
.++|.+.....+...+..+. -+-+.|.+|+|||+||+.+..... -...+|.........+++-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~l~----~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARALG----LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHHhC----CCeEEEecCCCCCHHHhcC
Confidence 47888887777777766543 577899999999999999987621 2445666666666666543
No 426
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=95.49 E-value=0.12 Score=41.61 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=53.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccC-CC----ceEEEEecCCCCHHHHHHHHHHHhcCCC------CCCCChHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVED-FK----PKAWVCVSDDFDVLRISKAILESITLSS------CDLKDLNSVQ 249 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~----~~~wv~vs~~~~~~~i~~~il~~l~~~~------~~~~~~~~~~ 249 (266)
..++-|.|+||.|||...++..-+.-+-. |. .+.+++.+..||...+.+.+=..+.... ....+.+++.
T Consensus 38 G~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~~e 117 (293)
T KOG2859|consen 38 GTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQLE 117 (293)
T ss_pred CcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHhHHH
Confidence 47999999999999998877666654555 65 4566789999998876655544443211 0123344556
Q ss_pred HHHHHHcCCceEEEE
Q 045226 250 LKLKEALLKKKFFDC 264 (266)
Q Consensus 250 ~~l~~~L~~kr~LiV 264 (266)
+....++ +||+.|
T Consensus 118 Ei~~~Cm--~Rf~~v 130 (293)
T KOG2859|consen 118 EIAGECM--SRFRFV 130 (293)
T ss_pred HHHHHHH--hhEEEE
Confidence 6666666 455544
No 427
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.49 E-value=0.012 Score=47.25 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999864
No 428
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.49 E-value=0.011 Score=50.02 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=18.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
++|+|.|-|||||||++-.+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 5899999999999998877544
No 429
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.48 E-value=0.016 Score=45.86 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|.|..|.||||||+.+...
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999998865
No 430
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.48 E-value=0.012 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999865
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.48 E-value=0.021 Score=46.54 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=43.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCC-CceEEEEecCCCCH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDF-KPKAWVCVSDDFDV 224 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F-~~~~wv~vs~~~~~ 224 (266)
.++||-++.++.+--.-.+++ ..-+-|.||+|+||||=+..+.+..-=..+ +...=.+.|.+-.+
T Consensus 27 ~dIVGNe~tv~rl~via~~gn------mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN------MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI 92 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc
Confidence 478999988888777665554 567889999999999977766554211112 34444555655443
No 432
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.48 E-value=0.055 Score=49.01 Aligned_cols=25 Identities=40% Similarity=0.473 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..-+-|+|+.|+|||+|++.+.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999873
No 433
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.46 E-value=0.012 Score=48.24 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999865
No 434
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.043 Score=43.57 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=36.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcccc----c-cC--CCceEEEE----------ecCCCCHHHHHHHHHHHhcCC
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKR----V-ED--FKPKAWVC----------VSDDFDVLRISKAILESITLS 238 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~----~-~~--F~~~~wv~----------vs~~~~~~~i~~~il~~l~~~ 238 (266)
.-||||.|+.-.||||||+....-.. + ++ |..--=|. +-...++..+++.|..-+...
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~ 78 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSR 78 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCc
Confidence 45899999999999999999765421 1 11 22222221 233456777777777766653
No 435
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.46 E-value=0.013 Score=47.45 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999875
No 436
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.45 E-value=0.061 Score=48.73 Aligned_cols=80 Identities=21% Similarity=0.186 Sum_probs=46.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHH
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKLKE 254 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l~~ 254 (266)
.-.++-|.|.+|+|||||+.++..... +.=..++|++.... ...+.. -++.++.... ...+.+.+.+.+.+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 357999999999999999998876532 11235677775543 333322 2444443211 22345555544433
Q ss_pred HcCCceEEEEeC
Q 045226 255 ALLKKKFFDCLG 266 (266)
Q Consensus 255 ~L~~kr~LiVLD 266 (266)
.+.-+||+|
T Consensus 155 ---~~~~lVVID 163 (446)
T PRK11823 155 ---EKPDLVVID 163 (446)
T ss_pred ---hCCCEEEEe
Confidence 244567776
No 437
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=95.44 E-value=0.014 Score=44.62 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 045226 183 VIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~ 203 (266)
+|+|+|..|+|||||...+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 799999999999999999874
No 438
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.44 E-value=0.012 Score=48.52 Aligned_cols=23 Identities=48% Similarity=0.707 Sum_probs=19.5
Q ss_pred EEEEEEec-CCCcHHHHHHHHHcc
Q 045226 182 RVIALVGM-GGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~-gGvGKTtLA~~v~~~ 204 (266)
++|+|+|+ ||+|||||+-.+..-
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~a 25 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWA 25 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHH
Confidence 58999998 899999999876553
No 439
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.44 E-value=0.01 Score=47.20 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|+|.|+.|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999875
No 440
>PRK06526 transposase; Provisional
Probab=95.43 E-value=0.011 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.-+.++|++|+|||+||..+.+..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH
Confidence 468999999999999999987653
No 441
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.42 E-value=0.013 Score=44.81 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-|.|+|.+|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999887753
No 442
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.42 E-value=0.013 Score=44.70 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
|+|+|..|+|||||...+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997763
No 443
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=95.42 E-value=0.012 Score=44.88 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 045226 184 IALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~ 203 (266)
|+++|..|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999983
No 444
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.41 E-value=0.013 Score=48.44 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|..|.|||||++.+..-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998653
No 445
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.41 E-value=0.022 Score=45.85 Aligned_cols=52 Identities=23% Similarity=0.251 Sum_probs=34.2
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEE
Q 045226 158 GRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVC 217 (266)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~ 217 (266)
.+..+-...++.|.. ..++.+.|++|.|||.||....-+.-... |+..+++.
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 445566667777773 46999999999999999988765543345 88777774
No 446
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.40 E-value=0.014 Score=44.82 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=18.1
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 045226 184 IALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~ 203 (266)
|.|+|.+|+|||+|+..+.+
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999998864
No 447
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.40 E-value=0.013 Score=48.09 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|+.|.|||||++.+..-.
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999998754
No 448
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.40 E-value=0.018 Score=46.77 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=31.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcccc-----ccC-CCceEEEEecCCCCHHHHHHHHHH
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDKR-----VED-FKPKAWVCVSDDFDVLRISKAILE 233 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~~-----~~~-F~~~~wv~vs~~~~~~~i~~~il~ 233 (266)
+..|+|++|.||||++..+..... ... -+..+-|+......+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 788999999999976665554431 113 455566666665566666666665
No 449
>PF13245 AAA_19: Part of AAA domain
Probab=95.39 E-value=0.026 Score=37.78 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=17.5
Q ss_pred EEEEEEecCCCcHH-HHHHHHHcc
Q 045226 182 RVIALVGMGGIGKT-TLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKT-tLA~~v~~~ 204 (266)
+++.|.|++|.||| |++..+.+-
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 57888999999999 555555544
No 450
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.39 E-value=0.014 Score=45.07 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|.++|.+|+|||||.+.+.+.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887654
No 451
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.39 E-value=0.013 Score=48.28 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 368999999999999999999864
No 452
>PRK10908 cell division protein FtsE; Provisional
Probab=95.38 E-value=0.014 Score=47.61 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999765
No 453
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.38 E-value=0.013 Score=45.07 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=17.8
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 045226 184 IALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~ 203 (266)
|.|+|..|+|||||...+..
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 68999999999999998754
No 454
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.38 E-value=0.013 Score=45.19 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|+|+|..|+|||||.+.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998754
No 455
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.37 E-value=0.072 Score=45.96 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=49.0
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcccccc----C--CCceEEEEecCCCCHHHHHHHHHHHh
Q 045226 162 EKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVE----D--FKPKAWVCVSDDFDVLRISKAILESI 235 (266)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~----~--F~~~~wv~vs~~~~~~~i~~~il~~l 235 (266)
-.+.|.+.|...+ .....+|+|.|.=|+||||+.+.+.+..+-. . +..-+|-.-..+--...++..|..++
T Consensus 4 ~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 4 YAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred HHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 3456777776542 2357899999999999999999998875444 1 12334444443333556777777777
Q ss_pred cCC
Q 045226 236 TLS 238 (266)
Q Consensus 236 ~~~ 238 (266)
...
T Consensus 81 ~~~ 83 (325)
T PF07693_consen 81 EKH 83 (325)
T ss_pred HHh
Confidence 654
No 456
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.36 E-value=0.015 Score=46.61 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999875
No 457
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.36 E-value=0.013 Score=46.92 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 045226 183 VIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~ 202 (266)
+++|+|+.|.|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999986
No 458
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.36 E-value=0.014 Score=47.88 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999864
No 459
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.015 Score=48.11 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-..++|+|+.|.|||||.+.+..-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 379999999999999999999873
No 460
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.36 E-value=0.015 Score=46.70 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||.+.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999998875
No 461
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.35 E-value=0.014 Score=48.25 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999864
No 462
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.35 E-value=0.015 Score=44.87 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 463
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.35 E-value=0.015 Score=46.99 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999875
No 464
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=95.35 E-value=0.014 Score=48.92 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
++|+|.|-||+||||++..+....
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~L 26 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAY 26 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 689999999999999998877653
No 465
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.35 E-value=0.038 Score=42.42 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKR 206 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~ 206 (266)
-..|+++|++|+||+||...+..+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 35788999999999999999988643
No 466
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.34 E-value=0.014 Score=44.98 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
|.|+|..|+|||||.+.+.+..
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999987653
No 467
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.34 E-value=0.015 Score=45.42 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999865
No 468
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.34 E-value=0.014 Score=48.23 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999875
No 469
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.33 E-value=0.014 Score=45.10 Aligned_cols=21 Identities=33% Similarity=0.770 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.++|.+|+|||||.+...+.
T Consensus 4 i~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999987654
No 470
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.014 Score=48.46 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999764
No 471
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.015 Score=46.35 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999863
No 472
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.33 E-value=0.015 Score=46.90 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999864
No 473
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.32 E-value=0.015 Score=48.75 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||.+.+..-
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999865
No 474
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.32 E-value=0.015 Score=47.26 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999865
No 475
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.32 E-value=0.014 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|+|+|.+|+|||||+..+.+.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988754
No 476
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.32 E-value=0.016 Score=44.00 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|..|.|||||++.+..-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3689999999999999999998763
No 477
>PRK14532 adenylate kinase; Provisional
Probab=95.32 E-value=0.013 Score=46.46 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.|.|++|+||||+|+.+...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999865
No 478
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.32 E-value=0.031 Score=52.11 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=31.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
+..+.|.+-.+.|.++.-.. .....+|.|+|+.|+||||+|+.+....
T Consensus 369 P~~f~rpeV~~iL~~~~~~r----~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPR----HKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred ChhhcHHHHHHHHHHHhccc----cCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 34455555455444443222 2235689999999999999999998763
No 479
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.31 E-value=0.015 Score=45.00 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999988765
No 480
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.31 E-value=0.068 Score=41.72 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=32.7
Q ss_pred EEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHH
Q 045226 184 IALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILE 233 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 233 (266)
+-|.|..|.|||++|...... .....+++.-++.++.+ +.+.|..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~e-m~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDE-MAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHH-HHHHHHH
Confidence 578999999999999887643 13467788878877753 4555544
No 481
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.31 E-value=0.015 Score=46.98 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999865
No 482
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.29 E-value=0.015 Score=49.71 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|-++|++|+||||+|+.+...
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 57888999999999999998766
No 483
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.28 E-value=0.015 Score=45.06 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.-|.++|.+|+|||||...+...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~ 25 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAG 25 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998654
No 484
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.28 E-value=0.014 Score=50.06 Aligned_cols=21 Identities=43% Similarity=0.744 Sum_probs=17.8
Q ss_pred EEEEEEecCCCcHHHHHHHHH
Q 045226 182 RVIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~ 202 (266)
+++-+.|-|||||||+|-...
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A 22 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALA 22 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHH
Confidence 578899999999999996543
No 485
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.28 E-value=0.035 Score=48.92 Aligned_cols=45 Identities=29% Similarity=0.393 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+++|-+..+..|.+.+..+.- ..-+-++|+.|+||+|||..+..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl-----~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRL-----HHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999998877652 46789999999999999976544
No 486
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.28 E-value=0.016 Score=47.38 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999865
No 487
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.28 E-value=0.015 Score=48.36 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
-.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999984
No 488
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.26 E-value=0.02 Score=44.86 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=29.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCC
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDD 221 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~ 221 (266)
..++-+.|+.|+|||.||+.+.....+ . ....+-++.+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcc
Confidence 678999999999999999998876332 3 445566665543
No 489
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.26 E-value=0.016 Score=44.94 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.++|.+|+|||||++.+.+.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998765
No 490
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.26 E-value=0.017 Score=44.94 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|..|.|||||++.+..-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998763
No 491
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.25 E-value=0.016 Score=47.77 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999998754
No 492
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.25 E-value=0.018 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..|+|.|+.|.|||||.+.+.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999876
No 493
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.24 E-value=0.073 Score=48.34 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=28.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD 220 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~ 220 (266)
.-.++.|.|.+|+|||||+.++..... +.=..++||+...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a-~~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA-KNQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEECcC
Confidence 457999999999999999998865421 1123566776544
No 494
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.016 Score=48.19 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~ 202 (266)
-.+++|+|..|.|||||++.+.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999995
No 495
>PRK07429 phosphoribulokinase; Provisional
Probab=95.24 E-value=0.021 Score=49.51 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-+|+|.|..|.|||||++.+..-
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhH
Confidence 4679999999999999999999865
No 496
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.24 E-value=0.016 Score=48.31 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999875
No 497
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.016 Score=47.93 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999864
No 498
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.24 E-value=0.016 Score=48.08 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 469999999999999999999754
No 499
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.23 E-value=0.029 Score=43.74 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|.++|.+|+|||||...+...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC
Confidence 356789999999999999998653
No 500
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.23 E-value=0.017 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|..|.|||||++.+...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999885
Done!