Query 045226
Match_columns 266
No_of_seqs 198 out of 1624
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 19:32:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.8 1.1E-20 3.7E-25 173.3 12.9 107 157-266 131-250 (549)
2 3qfl_A MLA10; coiled-coil, (CC 99.7 4.8E-18 1.6E-22 123.2 4.7 69 2-70 12-82 (115)
3 1vt4_I APAF-1 related killer D 99.7 5E-17 1.7E-21 154.8 8.0 107 155-266 129-251 (1221)
4 3sfz_A APAF-1, apoptotic pepti 99.7 1.7E-16 5.8E-21 157.5 9.8 112 151-266 121-243 (1249)
5 1z6t_A APAF-1, apoptotic prote 99.6 1.3E-14 4.4E-19 134.0 11.2 109 153-266 123-243 (591)
6 1w5s_A Origin recognition comp 99.1 3.4E-10 1.2E-14 99.5 8.6 113 153-266 21-145 (412)
7 2v1u_A Cell division control p 98.9 6.2E-09 2.1E-13 90.4 11.1 111 154-266 19-137 (387)
8 2qby_A CDC6 homolog 1, cell di 98.9 2.8E-09 9.7E-14 92.5 7.8 110 153-266 19-135 (386)
9 2qby_B CDC6 homolog 3, cell di 98.9 7.9E-09 2.7E-13 89.9 9.7 111 154-266 20-140 (384)
10 1fnn_A CDC6P, cell division co 98.9 1.3E-08 4.6E-13 88.5 10.9 112 154-266 17-132 (389)
11 2qen_A Walker-type ATPase; unk 98.8 8.6E-09 2.9E-13 88.3 7.8 101 152-266 10-135 (350)
12 3te6_A Regulatory protein SIR3 98.6 5.8E-08 2E-12 82.3 7.8 109 156-266 22-139 (318)
13 2fna_A Conserved hypothetical 98.6 2E-07 6.7E-12 79.9 9.7 69 152-234 11-84 (357)
14 2chg_A Replication factor C sm 98.3 2.4E-06 8.2E-11 67.8 9.0 69 154-228 17-86 (226)
15 1njg_A DNA polymerase III subu 98.2 3.1E-06 1.1E-10 68.0 7.9 47 154-205 23-69 (250)
16 1sxj_B Activator 1 37 kDa subu 98.0 5.3E-06 1.8E-10 70.0 6.1 74 154-234 21-95 (323)
17 1jbk_A CLPB protein; beta barr 98.0 5.3E-06 1.8E-10 64.2 5.3 46 154-205 22-67 (195)
18 2p65_A Hypothetical protein PF 97.9 7.7E-06 2.6E-10 63.0 4.7 46 154-205 22-67 (187)
19 2w58_A DNAI, primosome compone 97.7 9.8E-05 3.3E-09 58.0 7.5 55 162-219 37-91 (202)
20 2cvh_A DNA repair and recombin 97.7 0.00022 7.7E-09 56.5 9.6 81 181-266 20-112 (220)
21 3ec2_A DNA replication protein 97.7 5.9E-05 2E-09 58.2 5.7 43 160-205 20-62 (180)
22 3pxg_A Negative regulator of g 97.6 9.8E-05 3.4E-09 66.0 6.9 45 154-204 180-224 (468)
23 1sxj_A Activator 1 95 kDa subu 97.6 0.00011 3.9E-09 66.4 7.2 51 154-204 39-100 (516)
24 1qvr_A CLPB protein; coiled co 97.5 0.00033 1.1E-08 67.3 8.8 46 154-205 170-215 (854)
25 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.00061 2.1E-08 57.8 9.4 51 154-204 12-68 (322)
26 3pxi_A Negative regulator of g 97.4 0.0002 6.8E-09 67.9 6.9 45 154-204 180-224 (758)
27 1iqp_A RFCS; clamp loader, ext 97.4 0.00015 5.1E-09 61.1 5.5 45 154-204 25-69 (327)
28 1hqc_A RUVB; extended AAA-ATPa 97.4 0.00011 3.7E-09 62.1 4.5 70 154-228 12-81 (324)
29 3n70_A Transport activator; si 97.4 0.00011 3.8E-09 54.7 3.6 47 155-205 2-48 (145)
30 3h4m_A Proteasome-activating n 97.4 0.00014 4.8E-09 60.3 4.4 51 154-204 17-74 (285)
31 2vhj_A Ntpase P4, P4; non- hyd 97.3 9.5E-05 3.2E-09 62.4 3.2 65 181-266 123-189 (331)
32 3u61_B DNA polymerase accessor 97.3 0.0011 3.7E-08 56.0 9.5 46 154-204 26-71 (324)
33 1jr3_A DNA polymerase III subu 97.3 0.0002 6.9E-09 61.6 5.1 47 154-205 16-62 (373)
34 1rz3_A Hypothetical protein rb 97.3 0.00033 1.1E-08 55.1 5.8 43 159-204 3-45 (201)
35 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0011 3.9E-08 62.7 10.2 45 154-204 186-230 (758)
36 2px0_A Flagellar biosynthesis 97.2 0.00077 2.6E-08 56.5 7.7 24 181-204 105-128 (296)
37 1sxj_D Activator 1 41 kDa subu 97.2 0.00021 7.2E-09 61.0 4.2 46 154-205 37-82 (353)
38 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00033 1.1E-08 57.1 5.0 51 154-204 6-62 (262)
39 1lv7_A FTSH; alpha/beta domain 97.2 0.0013 4.5E-08 53.5 8.6 51 154-204 12-68 (257)
40 2zan_A Vacuolar protein sortin 97.2 0.0016 5.5E-08 57.7 9.7 51 154-204 134-190 (444)
41 3hr8_A Protein RECA; alpha and 97.2 0.00082 2.8E-08 57.7 7.5 81 180-266 60-146 (356)
42 3syl_A Protein CBBX; photosynt 97.2 0.0004 1.4E-08 58.2 5.5 51 155-205 32-91 (309)
43 3bos_A Putative DNA replicatio 97.2 0.00059 2E-08 54.6 6.1 58 155-219 29-89 (242)
44 3pfi_A Holliday junction ATP-d 97.2 0.00016 5.4E-09 61.6 2.7 50 154-204 29-78 (338)
45 2chq_A Replication factor C sm 97.1 0.00034 1.2E-08 58.7 4.4 45 154-204 17-61 (319)
46 3cf0_A Transitional endoplasmi 97.1 0.00041 1.4E-08 58.2 4.8 52 154-205 15-73 (301)
47 2xxa_A Signal recognition part 97.1 0.0023 7.9E-08 56.4 9.6 42 163-204 79-123 (433)
48 3b9p_A CG5977-PA, isoform A; A 97.1 0.00057 2E-08 56.9 5.5 51 154-204 21-77 (297)
49 3co5_A Putative two-component 97.1 0.00015 5.2E-09 53.8 1.6 47 154-204 4-50 (143)
50 1xp8_A RECA protein, recombina 97.1 0.0014 4.9E-08 56.5 7.8 80 181-266 74-159 (366)
51 3c8u_A Fructokinase; YP_612366 97.0 0.00057 1.9E-08 54.0 4.7 39 162-204 7-45 (208)
52 3pvs_A Replication-associated 97.0 0.00045 1.5E-08 61.3 4.4 45 154-204 26-73 (447)
53 3uk6_A RUVB-like 2; hexameric 97.0 0.00077 2.6E-08 57.9 5.7 48 154-205 44-94 (368)
54 2z43_A DNA repair and recombin 97.0 0.0024 8.2E-08 54.1 8.7 85 181-266 107-210 (324)
55 1u94_A RECA protein, recombina 97.0 0.0011 3.7E-08 57.0 6.4 80 181-266 63-148 (356)
56 1odf_A YGR205W, hypothetical 3 97.0 0.00057 2E-08 57.1 4.4 80 179-258 29-117 (290)
57 1sxj_E Activator 1 40 kDa subu 97.0 0.00055 1.9E-08 58.4 4.3 44 154-203 14-58 (354)
58 1n0w_A DNA repair protein RAD5 97.0 0.0015 5.3E-08 52.4 6.7 85 181-266 24-126 (243)
59 3eie_A Vacuolar protein sortin 97.0 0.00095 3.3E-08 56.5 5.7 50 154-204 18-74 (322)
60 3lw7_A Adenylate kinase relate 97.0 0.00042 1.4E-08 52.6 3.1 20 182-201 2-21 (179)
61 3d8b_A Fidgetin-like protein 1 97.0 0.00069 2.3E-08 58.3 4.7 51 154-204 84-140 (357)
62 1zp6_A Hypothetical protein AT 96.9 0.00059 2E-08 52.8 3.9 24 181-204 9-32 (191)
63 3io5_A Recombination and repai 96.9 0.0025 8.6E-08 53.6 7.8 80 182-266 29-118 (333)
64 2zr9_A Protein RECA, recombina 96.9 0.0022 7.6E-08 54.9 7.7 80 181-266 61-146 (349)
65 1v5w_A DMC1, meiotic recombina 96.9 0.0041 1.4E-07 53.1 9.3 56 180-236 121-181 (343)
66 3tqc_A Pantothenate kinase; bi 96.9 0.0037 1.3E-07 52.8 8.8 41 162-204 75-115 (321)
67 2z4s_A Chromosomal replication 96.9 0.0013 4.4E-08 58.3 6.0 24 181-204 130-153 (440)
68 1ofh_A ATP-dependent HSL prote 96.9 0.00072 2.4E-08 56.4 4.0 51 154-204 15-73 (310)
69 1in4_A RUVB, holliday junction 96.9 0.00035 1.2E-08 59.6 2.0 51 154-205 25-75 (334)
70 1d2n_A N-ethylmaleimide-sensit 96.9 0.0014 5E-08 53.8 5.7 47 155-204 34-87 (272)
71 2r62_A Cell division protease 96.8 0.00067 2.3E-08 55.6 3.4 52 154-205 11-68 (268)
72 1kgd_A CASK, peripheral plasma 96.8 0.00074 2.5E-08 52.1 3.5 24 181-204 5-28 (180)
73 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0024 8.4E-08 50.7 6.7 47 181-230 23-69 (235)
74 2bjv_A PSP operon transcriptio 96.8 0.0007 2.4E-08 55.5 3.5 46 155-204 7-52 (265)
75 3kb2_A SPBC2 prophage-derived 96.8 0.00063 2.1E-08 51.6 3.0 23 182-204 2-24 (173)
76 1sxj_C Activator 1 40 kDa subu 96.8 0.001 3.5E-08 56.6 4.5 45 154-204 25-69 (340)
77 3uie_A Adenylyl-sulfate kinase 96.8 0.00093 3.2E-08 52.4 3.7 25 181-205 25-49 (200)
78 3vaa_A Shikimate kinase, SK; s 96.8 0.00074 2.5E-08 52.9 3.2 24 181-204 25-48 (199)
79 3asz_A Uridine kinase; cytidin 96.8 0.00095 3.2E-08 52.6 3.8 25 180-204 5-29 (211)
80 4fcw_A Chaperone protein CLPB; 96.8 0.0016 5.4E-08 54.5 5.3 50 155-204 18-70 (311)
81 2i1q_A DNA repair and recombin 96.7 0.0036 1.2E-07 52.9 7.5 85 181-266 98-211 (322)
82 1ex7_A Guanylate kinase; subst 96.7 0.0007 2.4E-08 52.7 2.7 23 182-204 2-24 (186)
83 3tr0_A Guanylate kinase, GMP k 96.7 0.00092 3.2E-08 52.3 3.5 24 181-204 7-30 (205)
84 1gvn_B Zeta; postsegregational 96.7 0.002 6.9E-08 53.6 5.7 42 162-204 15-56 (287)
85 1ly1_A Polynucleotide kinase; 96.7 0.00093 3.2E-08 51.0 3.3 22 182-203 3-24 (181)
86 1qhx_A CPT, protein (chloramph 96.7 0.00081 2.8E-08 51.4 2.9 23 182-204 4-26 (178)
87 2ga8_A Hypothetical 39.9 kDa p 96.7 0.002 6.8E-08 55.1 5.5 46 157-204 2-47 (359)
88 2qt1_A Nicotinamide riboside k 96.7 0.0014 4.9E-08 51.5 4.3 25 180-204 20-44 (207)
89 1kag_A SKI, shikimate kinase I 96.7 0.00073 2.5E-08 51.4 2.5 23 182-204 5-27 (173)
90 4gp7_A Metallophosphoesterase; 96.7 0.001 3.5E-08 50.9 3.2 23 181-203 9-31 (171)
91 3tau_A Guanylate kinase, GMP k 96.7 0.0011 3.7E-08 52.4 3.4 25 181-205 8-32 (208)
92 3vfd_A Spastin; ATPase, microt 96.7 0.0016 5.4E-08 56.6 4.8 51 154-204 115-171 (389)
93 2p5t_B PEZT; postsegregational 96.7 0.0018 6.1E-08 52.8 4.8 44 160-204 12-55 (253)
94 1j8m_F SRP54, signal recogniti 96.6 0.0026 8.7E-08 53.3 5.7 24 181-204 98-121 (297)
95 1knq_A Gluconate kinase; ALFA/ 96.6 0.0014 4.9E-08 49.9 3.9 24 181-204 8-31 (175)
96 1uj2_A Uridine-cytidine kinase 96.6 0.0011 3.9E-08 53.9 3.5 25 180-204 21-45 (252)
97 4eun_A Thermoresistant glucoki 96.6 0.0011 3.8E-08 51.9 3.3 24 181-204 29-52 (200)
98 2bdt_A BH3686; alpha-beta prot 96.6 0.0012 4.1E-08 51.1 3.5 22 182-203 3-24 (189)
99 1ye8_A Protein THEP1, hypothet 96.6 0.0011 3.7E-08 51.2 3.1 23 183-205 2-24 (178)
100 2j41_A Guanylate kinase; GMP, 96.6 0.0011 3.9E-08 51.8 3.3 24 181-204 6-29 (207)
101 1nks_A Adenylate kinase; therm 96.6 0.0012 4.2E-08 50.9 3.4 23 182-204 2-24 (194)
102 3dm5_A SRP54, signal recogniti 96.6 0.0065 2.2E-07 53.6 8.3 25 180-204 99-123 (443)
103 3a00_A Guanylate kinase, GMP k 96.6 0.00087 3E-08 51.9 2.5 23 182-204 2-24 (186)
104 1vma_A Cell division protein F 96.6 0.0026 8.8E-08 53.5 5.4 25 180-204 103-127 (306)
105 1ojl_A Transcriptional regulat 96.6 0.0013 4.4E-08 55.3 3.6 47 154-204 2-48 (304)
106 2qp9_X Vacuolar protein sortin 96.6 0.0017 5.8E-08 55.8 4.4 52 154-205 51-108 (355)
107 2rhm_A Putative kinase; P-loop 96.6 0.0017 6E-08 50.1 4.0 24 181-204 5-28 (193)
108 1lvg_A Guanylate kinase, GMP k 96.6 0.00097 3.3E-08 52.3 2.5 23 181-203 4-26 (198)
109 1rj9_A FTSY, signal recognitio 96.6 0.0015 5E-08 55.0 3.7 25 180-204 101-125 (304)
110 1uf9_A TT1252 protein; P-loop, 96.5 0.0017 5.7E-08 50.7 3.8 25 180-204 7-31 (203)
111 3aez_A Pantothenate kinase; tr 96.5 0.0016 5.3E-08 55.0 3.8 25 180-204 89-113 (312)
112 2kjq_A DNAA-related protein; s 96.5 0.00092 3.1E-08 50.0 2.1 25 181-205 36-60 (149)
113 3trf_A Shikimate kinase, SK; a 96.5 0.0012 4.3E-08 50.7 3.0 24 181-204 5-28 (185)
114 3t61_A Gluconokinase; PSI-biol 96.5 0.00093 3.2E-08 52.4 2.3 24 181-204 18-41 (202)
115 2jaq_A Deoxyguanosine kinase; 96.5 0.0013 4.5E-08 51.3 3.1 22 183-204 2-23 (205)
116 2if2_A Dephospho-COA kinase; a 96.5 0.0014 4.7E-08 51.4 3.2 22 182-203 2-23 (204)
117 1cke_A CK, MSSA, protein (cyti 96.5 0.0013 4.4E-08 52.4 3.1 23 182-204 6-28 (227)
118 3kl4_A SRP54, signal recogniti 96.5 0.014 4.9E-07 51.3 9.9 25 180-204 96-120 (433)
119 3hws_A ATP-dependent CLP prote 96.5 0.0024 8.2E-08 54.9 4.9 50 155-204 16-74 (363)
120 2r44_A Uncharacterized protein 96.5 0.0017 5.9E-08 54.9 3.9 42 155-204 28-69 (331)
121 2hf9_A Probable hydrogenase ni 96.5 0.0031 1.1E-07 50.0 5.1 24 181-204 38-61 (226)
122 2ffh_A Protein (FFH); SRP54, s 96.5 0.0056 1.9E-07 53.8 7.1 24 181-204 98-121 (425)
123 2yvu_A Probable adenylyl-sulfa 96.5 0.0022 7.6E-08 49.4 4.0 26 180-205 12-37 (186)
124 1znw_A Guanylate kinase, GMP k 96.5 0.0016 5.5E-08 51.3 3.2 24 181-204 20-43 (207)
125 2qor_A Guanylate kinase; phosp 96.5 0.0012 4.3E-08 51.8 2.6 24 181-204 12-35 (204)
126 2bbw_A Adenylate kinase 4, AK4 96.5 0.0016 5.5E-08 52.8 3.3 23 181-203 27-49 (246)
127 1kht_A Adenylate kinase; phosp 96.5 0.0016 5.3E-08 50.3 3.1 23 182-204 4-26 (192)
128 2c9o_A RUVB-like 1; hexameric 96.5 0.0021 7.2E-08 57.1 4.3 48 154-205 37-87 (456)
129 2jeo_A Uridine-cytidine kinase 96.4 0.0021 7.1E-08 52.1 3.8 24 181-204 25-48 (245)
130 1jjv_A Dephospho-COA kinase; P 96.4 0.0019 6.6E-08 50.6 3.5 22 182-203 3-24 (206)
131 3iij_A Coilin-interacting nucl 96.4 0.0017 5.8E-08 49.8 3.1 24 181-204 11-34 (180)
132 1ukz_A Uridylate kinase; trans 96.4 0.0022 7.4E-08 50.2 3.7 25 180-204 14-38 (203)
133 3nbx_X ATPase RAVA; AAA+ ATPas 96.4 0.0035 1.2E-07 56.3 5.5 43 155-205 23-65 (500)
134 2ze6_A Isopentenyl transferase 96.4 0.0018 6E-08 52.9 3.3 23 182-204 2-24 (253)
135 3t15_A Ribulose bisphosphate c 96.4 0.002 6.8E-08 53.8 3.7 26 180-205 35-60 (293)
136 2wsm_A Hydrogenase expression/ 96.4 0.0025 8.5E-08 50.4 4.0 42 157-204 12-53 (221)
137 2c95_A Adenylate kinase 1; tra 96.4 0.002 6.8E-08 49.9 3.3 24 181-204 9-32 (196)
138 1z6g_A Guanylate kinase; struc 96.4 0.0015 5.2E-08 52.0 2.7 24 181-204 23-46 (218)
139 1xjc_A MOBB protein homolog; s 96.4 0.0018 6.3E-08 49.4 3.0 26 180-205 3-28 (169)
140 1l8q_A Chromosomal replication 96.4 0.0041 1.4E-07 52.4 5.5 25 181-205 37-61 (324)
141 3lda_A DNA repair protein RAD5 96.4 0.011 3.7E-07 51.6 8.2 56 181-237 178-238 (400)
142 1tev_A UMP-CMP kinase; ploop, 96.4 0.0021 7.1E-08 49.7 3.4 24 181-204 3-26 (196)
143 3ney_A 55 kDa erythrocyte memb 96.4 0.0021 7E-08 50.4 3.2 24 181-204 19-42 (197)
144 3ice_A Transcription terminati 96.3 0.0042 1.4E-07 53.7 5.3 53 164-222 162-216 (422)
145 1zuh_A Shikimate kinase; alpha 96.3 0.0019 6.6E-08 48.9 2.9 25 180-204 6-30 (168)
146 1sq5_A Pantothenate kinase; P- 96.3 0.0055 1.9E-07 51.5 6.0 25 180-204 79-103 (308)
147 1htw_A HI0065; nucleotide-bind 96.3 0.0027 9.4E-08 47.9 3.7 24 181-204 33-56 (158)
148 1y63_A LMAJ004144AAA protein; 96.3 0.0022 7.6E-08 49.5 3.3 24 181-204 10-33 (184)
149 1s96_A Guanylate kinase, GMP k 96.3 0.0023 7.8E-08 51.1 3.3 25 181-205 16-40 (219)
150 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0024 8.1E-08 52.3 3.5 24 181-204 4-27 (260)
151 3fwy_A Light-independent proto 96.3 0.0024 8.1E-08 53.9 3.5 24 180-203 47-70 (314)
152 4e22_A Cytidylate kinase; P-lo 96.3 0.0024 8.1E-08 52.1 3.4 22 181-202 27-48 (252)
153 2og2_A Putative signal recogni 96.3 0.0053 1.8E-07 52.7 5.7 25 180-204 156-180 (359)
154 3bh0_A DNAB-like replicative h 96.3 0.012 4.2E-07 49.5 7.9 50 181-233 68-117 (315)
155 3cm0_A Adenylate kinase; ATP-b 96.3 0.0025 8.5E-08 49.0 3.3 24 181-204 4-27 (186)
156 2pez_A Bifunctional 3'-phospho 96.3 0.0027 9.3E-08 48.6 3.5 24 181-204 5-28 (179)
157 2plr_A DTMP kinase, probable t 96.3 0.0026 9E-08 49.8 3.5 24 181-204 4-27 (213)
158 1qf9_A UMP/CMP kinase, protein 96.3 0.0034 1.2E-07 48.3 4.1 24 181-204 6-29 (194)
159 1via_A Shikimate kinase; struc 96.3 0.0019 6.5E-08 49.3 2.5 23 182-204 5-27 (175)
160 2j37_W Signal recognition part 96.3 0.026 9E-07 50.6 10.2 41 163-203 80-123 (504)
161 1gtv_A TMK, thymidylate kinase 96.3 0.0013 4.5E-08 51.8 1.6 22 183-204 2-23 (214)
162 2cdn_A Adenylate kinase; phosp 96.2 0.0029 1E-07 49.4 3.6 24 181-204 20-43 (201)
163 2bwj_A Adenylate kinase 5; pho 96.2 0.0025 8.7E-08 49.4 3.2 23 182-204 13-35 (199)
164 3b9q_A Chloroplast SRP recepto 96.2 0.003 1E-07 53.0 3.7 24 181-204 100-123 (302)
165 4a74_A DNA repair and recombin 96.2 0.003 1E-07 50.2 3.5 45 181-225 25-74 (231)
166 2f1r_A Molybdopterin-guanine d 96.2 0.0017 5.9E-08 49.7 2.0 23 182-204 3-25 (171)
167 2pbr_A DTMP kinase, thymidylat 96.2 0.0026 8.7E-08 49.1 3.0 22 183-204 2-23 (195)
168 2iyv_A Shikimate kinase, SK; t 96.2 0.0019 6.4E-08 49.7 2.1 23 182-204 3-25 (184)
169 1g8p_A Magnesium-chelatase 38 96.2 0.0024 8.3E-08 54.2 3.0 46 154-205 24-69 (350)
170 2i3b_A HCR-ntpase, human cance 96.2 0.0023 8E-08 49.8 2.7 23 182-204 2-24 (189)
171 2pcj_A ABC transporter, lipopr 96.2 0.0028 9.5E-08 50.7 3.1 23 182-204 31-53 (224)
172 2yhs_A FTSY, cell division pro 96.2 0.0067 2.3E-07 54.1 5.7 25 180-204 292-316 (503)
173 2ehv_A Hypothetical protein PH 96.2 0.0029 1E-07 50.9 3.2 22 181-202 30-51 (251)
174 2onk_A Molybdate/tungstate ABC 96.2 0.003 1E-07 51.2 3.2 23 182-204 25-47 (240)
175 3tif_A Uncharacterized ABC tra 96.1 0.0028 9.4E-08 51.2 3.0 24 181-204 31-54 (235)
176 1nn5_A Similar to deoxythymidy 96.1 0.0033 1.1E-07 49.4 3.4 24 181-204 9-32 (215)
177 1zu4_A FTSY; GTPase, signal re 96.1 0.0079 2.7E-07 50.8 5.9 26 179-204 103-128 (320)
178 2f6r_A COA synthase, bifunctio 96.1 0.0037 1.3E-07 51.8 3.9 23 180-202 74-96 (281)
179 1e6c_A Shikimate kinase; phosp 96.1 0.0022 7.6E-08 48.6 2.3 23 182-204 3-25 (173)
180 2pt5_A Shikimate kinase, SK; a 96.1 0.0031 1.1E-07 47.6 3.0 22 183-204 2-23 (168)
181 1aky_A Adenylate kinase; ATP:A 96.1 0.0031 1.1E-07 50.1 3.2 24 181-204 4-27 (220)
182 1ixz_A ATP-dependent metallopr 96.1 0.0027 9.2E-08 51.6 2.8 22 184-205 52-73 (254)
183 2grj_A Dephospho-COA kinase; T 96.1 0.0039 1.3E-07 48.7 3.6 25 180-204 11-35 (192)
184 3e70_C DPA, signal recognition 96.1 0.004 1.4E-07 52.8 3.9 25 180-204 128-152 (328)
185 3hu3_A Transitional endoplasmi 96.1 0.0044 1.5E-07 55.6 4.4 51 154-204 204-261 (489)
186 2vli_A Antibiotic resistance p 96.1 0.0021 7.3E-08 49.2 2.0 24 181-204 5-28 (183)
187 2wwf_A Thymidilate kinase, put 96.1 0.0034 1.2E-07 49.3 3.3 24 181-204 10-33 (212)
188 4a1f_A DNAB helicase, replicat 96.1 0.02 7E-07 48.6 8.2 50 181-233 46-95 (338)
189 3m6a_A ATP-dependent protease 96.1 0.003 1E-07 57.4 3.2 51 154-204 81-131 (543)
190 1m7g_A Adenylylsulfate kinase; 96.1 0.0041 1.4E-07 49.1 3.6 24 181-204 25-48 (211)
191 3b85_A Phosphate starvation-in 96.1 0.0028 9.6E-08 50.1 2.6 23 182-204 23-45 (208)
192 3lnc_A Guanylate kinase, GMP k 96.1 0.0022 7.5E-08 51.4 2.0 22 181-202 27-48 (231)
193 1um8_A ATP-dependent CLP prote 96.1 0.0061 2.1E-07 52.6 4.9 24 181-204 72-95 (376)
194 4b4t_K 26S protease regulatory 96.1 0.0075 2.6E-07 53.0 5.5 51 154-204 172-229 (428)
195 2x8a_A Nuclear valosin-contain 96.1 0.003 1E-07 52.2 2.8 50 154-204 10-67 (274)
196 2cbz_A Multidrug resistance-as 96.0 0.0034 1.1E-07 50.7 3.0 25 181-205 31-55 (237)
197 2b8t_A Thymidine kinase; deoxy 96.0 0.002 6.9E-08 51.5 1.7 25 181-205 12-36 (223)
198 2z0h_A DTMP kinase, thymidylat 96.0 0.0036 1.2E-07 48.5 3.1 22 183-204 2-23 (197)
199 1b0u_A Histidine permease; ABC 96.0 0.0034 1.2E-07 51.5 3.0 24 181-204 32-55 (262)
200 1zd8_A GTP:AMP phosphotransfer 96.0 0.0036 1.2E-07 49.9 3.1 24 181-204 7-30 (227)
201 3gfo_A Cobalt import ATP-bindi 96.0 0.0036 1.2E-07 51.8 3.0 24 181-204 34-57 (275)
202 1vht_A Dephospho-COA kinase; s 96.0 0.0048 1.6E-07 48.8 3.7 23 181-203 4-26 (218)
203 1ji0_A ABC transporter; ATP bi 96.0 0.0037 1.3E-07 50.6 3.0 24 181-204 32-55 (240)
204 2v54_A DTMP kinase, thymidylat 96.0 0.0041 1.4E-07 48.4 3.2 24 181-204 4-27 (204)
205 2d2e_A SUFC protein; ABC-ATPas 96.0 0.0041 1.4E-07 50.7 3.2 23 182-204 30-52 (250)
206 2ged_A SR-beta, signal recogni 96.0 0.0079 2.7E-07 46.2 4.8 26 180-205 47-72 (193)
207 1g6h_A High-affinity branched- 96.0 0.0038 1.3E-07 51.1 3.0 24 181-204 33-56 (257)
208 2pze_A Cystic fibrosis transme 95.9 0.004 1.4E-07 50.0 3.0 25 181-205 34-58 (229)
209 1sky_E F1-ATPase, F1-ATP synth 95.9 0.016 5.6E-07 51.3 7.1 51 182-232 152-203 (473)
210 2olj_A Amino acid ABC transpor 95.9 0.004 1.4E-07 51.2 3.0 24 181-204 50-73 (263)
211 1ypw_A Transitional endoplasmi 95.9 0.0056 1.9E-07 58.3 4.4 51 154-204 204-261 (806)
212 4b4t_L 26S protease subunit RP 95.9 0.011 3.6E-07 52.2 5.9 51 154-204 181-238 (437)
213 1mv5_A LMRA, multidrug resista 95.9 0.0049 1.7E-07 49.9 3.5 24 181-204 28-51 (243)
214 2zu0_C Probable ATP-dependent 95.9 0.0043 1.5E-07 51.0 3.2 24 181-204 46-69 (267)
215 4g1u_C Hemin import ATP-bindin 95.9 0.004 1.4E-07 51.2 3.0 24 181-204 37-60 (266)
216 3p32_A Probable GTPase RV1496/ 95.9 0.0093 3.2E-07 51.1 5.4 38 163-204 65-102 (355)
217 1np6_A Molybdopterin-guanine d 95.9 0.0044 1.5E-07 47.6 3.0 24 181-204 6-29 (174)
218 3end_A Light-independent proto 95.9 0.0048 1.6E-07 51.6 3.5 26 179-204 39-64 (307)
219 2ff7_A Alpha-hemolysin translo 95.9 0.0042 1.4E-07 50.5 3.0 23 182-204 36-58 (247)
220 1iy2_A ATP-dependent metallopr 95.9 0.0039 1.3E-07 51.4 2.8 51 154-205 40-97 (278)
221 1zak_A Adenylate kinase; ATP:A 95.9 0.004 1.4E-07 49.5 2.8 24 181-204 5-28 (222)
222 1sgw_A Putative ABC transporte 95.9 0.0035 1.2E-07 49.8 2.4 23 182-204 36-58 (214)
223 3umf_A Adenylate kinase; rossm 95.9 0.0057 2E-07 48.7 3.7 26 179-204 27-52 (217)
224 1oix_A RAS-related protein RAB 95.9 0.0049 1.7E-07 47.6 3.3 25 181-205 29-53 (191)
225 1vpl_A ABC transporter, ATP-bi 95.9 0.0044 1.5E-07 50.7 3.0 24 181-204 41-64 (256)
226 1yrb_A ATP(GTP)binding protein 95.9 0.0061 2.1E-07 49.5 3.9 25 179-203 12-36 (262)
227 2ixe_A Antigen peptide transpo 95.9 0.0044 1.5E-07 51.1 3.0 24 181-204 45-68 (271)
228 2ghi_A Transport protein; mult 95.9 0.0044 1.5E-07 50.8 3.0 24 181-204 46-69 (260)
229 2vp4_A Deoxynucleoside kinase; 95.9 0.0049 1.7E-07 49.3 3.2 25 180-204 19-43 (230)
230 3fb4_A Adenylate kinase; psych 95.9 0.0047 1.6E-07 48.7 3.1 22 183-204 2-23 (216)
231 1pzn_A RAD51, DNA repair and r 95.8 0.012 4.2E-07 50.2 5.8 47 180-226 130-181 (349)
232 3ake_A Cytidylate kinase; CMP 95.8 0.005 1.7E-07 48.1 3.1 22 183-204 4-25 (208)
233 2qi9_C Vitamin B12 import ATP- 95.8 0.0048 1.6E-07 50.2 3.0 23 182-204 27-49 (249)
234 2ce7_A Cell division protein F 95.8 0.0064 2.2E-07 54.2 4.1 52 154-205 16-73 (476)
235 2yz2_A Putative ABC transporte 95.8 0.0048 1.6E-07 50.7 3.0 24 181-204 33-56 (266)
236 3be4_A Adenylate kinase; malar 95.8 0.0044 1.5E-07 49.1 2.7 24 181-204 5-28 (217)
237 3d3q_A TRNA delta(2)-isopenten 95.8 0.0052 1.8E-07 52.2 3.3 23 182-204 8-30 (340)
238 3nwj_A ATSK2; P loop, shikimat 95.8 0.0038 1.3E-07 50.8 2.4 23 182-204 49-71 (250)
239 4b4t_M 26S protease regulatory 95.8 0.011 3.9E-07 51.9 5.5 51 154-204 181-238 (434)
240 2ihy_A ABC transporter, ATP-bi 95.8 0.0049 1.7E-07 51.0 3.0 24 181-204 47-70 (279)
241 2nq2_C Hypothetical ABC transp 95.8 0.005 1.7E-07 50.2 3.0 23 182-204 32-54 (253)
242 3dl0_A Adenylate kinase; phosp 95.8 0.0053 1.8E-07 48.4 3.1 22 183-204 2-23 (216)
243 2wji_A Ferrous iron transport 95.8 0.007 2.4E-07 45.5 3.6 23 182-204 4-26 (165)
244 2zej_A Dardarin, leucine-rich 95.8 0.0049 1.7E-07 47.2 2.8 22 183-204 4-25 (184)
245 4b4t_J 26S protease regulatory 95.8 0.0078 2.7E-07 52.4 4.2 51 154-204 148-205 (405)
246 3tlx_A Adenylate kinase 2; str 95.7 0.0066 2.2E-07 49.1 3.6 24 181-204 29-52 (243)
247 2f9l_A RAB11B, member RAS onco 95.7 0.0054 1.8E-07 47.6 2.9 24 181-204 5-28 (199)
248 2gno_A DNA polymerase III, gam 95.7 0.057 1.9E-06 45.2 9.4 71 160-237 3-76 (305)
249 2eyu_A Twitching motility prot 95.7 0.0073 2.5E-07 49.5 3.7 23 181-203 25-47 (261)
250 2qgz_A Helicase loader, putati 95.7 0.01 3.5E-07 49.8 4.7 42 161-205 135-176 (308)
251 3r20_A Cytidylate kinase; stru 95.7 0.0059 2E-07 49.1 3.1 24 181-204 9-32 (233)
252 2v9p_A Replication protein E1; 95.7 0.0061 2.1E-07 51.1 3.3 23 181-203 126-148 (305)
253 3sop_A Neuronal-specific septi 95.7 0.0061 2.1E-07 50.2 3.2 22 183-204 4-25 (270)
254 2dyk_A GTP-binding protein; GT 95.7 0.0076 2.6E-07 44.6 3.5 23 182-204 2-24 (161)
255 2v3c_C SRP54, signal recogniti 95.7 0.0086 2.9E-07 52.8 4.3 25 180-204 98-122 (432)
256 3a8t_A Adenylate isopentenyltr 95.7 0.0081 2.8E-07 51.0 3.9 25 181-205 40-64 (339)
257 2ce2_X GTPase HRAS; signaling 95.6 0.0066 2.3E-07 45.0 3.1 22 183-204 5-26 (166)
258 3k1j_A LON protease, ATP-depen 95.6 0.0095 3.3E-07 54.8 4.5 43 154-204 41-83 (604)
259 3pxi_A Negative regulator of g 95.6 0.016 5.5E-07 54.8 6.1 51 154-204 491-544 (758)
260 1ls1_A Signal recognition part 95.6 0.008 2.7E-07 50.2 3.6 24 181-204 98-121 (295)
261 2wjg_A FEOB, ferrous iron tran 95.6 0.0081 2.8E-07 45.9 3.4 24 181-204 7-30 (188)
262 1a7j_A Phosphoribulokinase; tr 95.6 0.0037 1.3E-07 52.1 1.5 24 181-204 5-28 (290)
263 3exa_A TRNA delta(2)-isopenten 95.6 0.0083 2.8E-07 50.4 3.6 24 181-204 3-26 (322)
264 4b4t_H 26S protease regulatory 95.6 0.015 5.2E-07 51.4 5.4 51 154-204 209-266 (467)
265 2pjz_A Hypothetical protein ST 95.5 0.0069 2.4E-07 49.7 3.0 23 182-204 31-53 (263)
266 2ck3_D ATP synthase subunit be 95.5 0.079 2.7E-06 47.0 9.8 65 165-234 142-207 (482)
267 1tue_A Replication protein E1; 95.5 0.011 3.9E-07 46.4 4.0 37 163-204 45-81 (212)
268 1a5t_A Delta prime, HOLB; zinc 95.5 0.072 2.5E-06 45.0 9.4 40 160-204 8-47 (334)
269 1e4v_A Adenylate kinase; trans 95.5 0.0078 2.7E-07 47.5 3.2 22 183-204 2-23 (214)
270 1z2a_A RAS-related protein RAB 95.5 0.0076 2.6E-07 44.9 2.9 24 181-204 5-28 (168)
271 2xb4_A Adenylate kinase; ATP-b 95.5 0.0077 2.7E-07 47.9 3.1 22 183-204 2-23 (223)
272 3crm_A TRNA delta(2)-isopenten 95.5 0.0082 2.8E-07 50.7 3.3 23 182-204 6-28 (323)
273 3nh6_A ATP-binding cassette SU 95.5 0.0061 2.1E-07 51.2 2.5 24 181-204 80-103 (306)
274 3con_A GTPase NRAS; structural 95.5 0.0079 2.7E-07 46.1 3.0 24 182-205 22-45 (190)
275 2bbs_A Cystic fibrosis transme 95.4 0.0086 3E-07 49.9 3.3 25 181-205 64-88 (290)
276 2r6a_A DNAB helicase, replicat 95.4 0.041 1.4E-06 48.8 7.8 50 181-232 203-252 (454)
277 1cr0_A DNA primase/helicase; R 95.4 0.0088 3E-07 49.7 3.3 37 181-218 35-72 (296)
278 1ak2_A Adenylate kinase isoenz 95.4 0.0092 3.2E-07 47.8 3.3 24 181-204 16-39 (233)
279 1nlf_A Regulatory protein REPA 95.4 0.0091 3.1E-07 49.2 3.3 24 181-204 30-53 (279)
280 1ltq_A Polynucleotide kinase; 95.4 0.0089 3.1E-07 49.7 3.3 23 182-204 3-25 (301)
281 1q3t_A Cytidylate kinase; nucl 95.4 0.0097 3.3E-07 47.8 3.3 25 179-203 14-38 (236)
282 1u8z_A RAS-related protein RAL 95.3 0.0093 3.2E-07 44.3 3.0 24 181-204 4-27 (168)
283 2ocp_A DGK, deoxyguanosine kin 95.3 0.011 3.9E-07 47.5 3.6 25 181-205 2-26 (241)
284 3q72_A GTP-binding protein RAD 95.3 0.0091 3.1E-07 44.5 2.8 22 183-204 4-25 (166)
285 2nzj_A GTP-binding protein REM 95.3 0.014 4.8E-07 43.8 3.9 25 181-205 4-28 (175)
286 3lv8_A DTMP kinase, thymidylat 95.3 0.023 8E-07 45.7 5.4 37 181-217 27-63 (236)
287 2dhr_A FTSH; AAA+ protein, hex 95.3 0.015 5.2E-07 52.1 4.7 52 154-205 31-88 (499)
288 2erx_A GTP-binding protein DI- 95.3 0.01 3.5E-07 44.3 3.1 23 182-204 4-26 (172)
289 3fvq_A Fe(3+) IONS import ATP- 95.3 0.01 3.4E-07 51.0 3.3 24 181-204 30-53 (359)
290 3zvl_A Bifunctional polynucleo 95.3 0.0097 3.3E-07 52.2 3.4 25 180-204 257-281 (416)
291 3foz_A TRNA delta(2)-isopenten 95.3 0.013 4.3E-07 49.2 3.8 24 181-204 10-33 (316)
292 1svm_A Large T antigen; AAA+ f 95.3 0.0097 3.3E-07 51.4 3.3 24 181-204 169-192 (377)
293 1c1y_A RAS-related protein RAP 95.3 0.01 3.4E-07 44.2 2.9 23 182-204 4-26 (167)
294 1nij_A Hypothetical protein YJ 95.3 0.01 3.5E-07 50.0 3.3 25 180-204 3-27 (318)
295 3q85_A GTP-binding protein REM 95.3 0.011 3.7E-07 44.2 3.1 22 182-203 3-24 (169)
296 3kta_A Chromosome segregation 95.3 0.011 3.9E-07 45.1 3.3 22 182-203 27-48 (182)
297 3tui_C Methionine import ATP-b 95.3 0.01 3.4E-07 51.0 3.2 24 181-204 54-77 (366)
298 1m7b_A RND3/RHOE small GTP-bin 95.3 0.01 3.6E-07 45.3 3.1 24 181-204 7-30 (184)
299 1cp2_A CP2, nitrogenase iron p 95.2 0.011 3.9E-07 48.2 3.4 23 182-204 2-24 (269)
300 2gj8_A MNME, tRNA modification 95.2 0.014 4.9E-07 44.1 3.8 23 182-204 5-27 (172)
301 1z08_A RAS-related protein RAB 95.2 0.01 3.6E-07 44.3 2.9 24 181-204 6-29 (170)
302 1g41_A Heat shock protein HSLU 95.2 0.013 4.5E-07 51.6 4.0 52 154-205 15-74 (444)
303 3t1o_A Gliding protein MGLA; G 95.2 0.01 3.5E-07 45.5 2.9 24 181-204 14-37 (198)
304 4eaq_A DTMP kinase, thymidylat 95.2 0.013 4.5E-07 46.9 3.7 25 181-205 26-50 (229)
305 1ek0_A Protein (GTP-binding pr 95.2 0.011 3.7E-07 44.1 3.0 23 183-205 5-27 (170)
306 1z0j_A RAB-22, RAS-related pro 95.2 0.011 3.7E-07 44.1 2.9 24 182-205 7-30 (170)
307 2lkc_A Translation initiation 95.2 0.014 4.9E-07 43.9 3.7 25 180-204 7-31 (178)
308 3cf2_A TER ATPase, transitiona 95.2 0.027 9.2E-07 53.4 6.1 52 154-205 204-262 (806)
309 2afh_E Nitrogenase iron protei 95.2 0.013 4.4E-07 48.5 3.6 24 181-204 2-25 (289)
310 2cxx_A Probable GTP-binding pr 95.2 0.012 4.1E-07 44.9 3.2 22 183-204 3-24 (190)
311 2fn4_A P23, RAS-related protei 95.2 0.011 3.9E-07 44.5 3.0 25 180-204 8-32 (181)
312 1svi_A GTP-binding protein YSX 95.2 0.015 5.1E-07 44.6 3.8 25 181-205 23-47 (195)
313 1kao_A RAP2A; GTP-binding prot 95.2 0.011 3.8E-07 43.8 2.9 23 182-204 4-26 (167)
314 3upu_A ATP-dependent DNA helic 95.2 0.021 7.2E-07 50.6 5.2 23 183-205 47-69 (459)
315 1ky3_A GTP-binding protein YPT 95.2 0.011 3.8E-07 44.6 2.9 25 180-204 7-31 (182)
316 3ihw_A Centg3; RAS, centaurin, 95.2 0.011 3.9E-07 45.3 3.0 24 181-204 20-43 (184)
317 1z47_A CYSA, putative ABC-tran 95.2 0.012 3.9E-07 50.5 3.2 24 181-204 41-64 (355)
318 2qnr_A Septin-2, protein NEDD5 95.1 0.01 3.5E-07 49.7 2.9 23 181-204 19-41 (301)
319 1f6b_A SAR1; gtpases, N-termin 95.1 0.01 3.4E-07 46.1 2.6 23 182-204 26-48 (198)
320 4tmk_A Protein (thymidylate ki 95.1 0.03 1E-06 44.3 5.4 52 182-233 4-55 (213)
321 3tw8_B RAS-related protein RAB 95.1 0.011 3.7E-07 44.6 2.7 25 180-204 8-32 (181)
322 3pqc_A Probable GTP-binding pr 95.1 0.016 5.6E-07 44.3 3.8 25 181-205 23-47 (195)
323 2q6t_A DNAB replication FORK h 95.1 0.07 2.4E-06 47.1 8.3 51 181-233 200-250 (444)
324 1g16_A RAS-related protein SEC 95.1 0.012 4.2E-07 43.8 3.0 24 181-204 3-26 (170)
325 1pui_A ENGB, probable GTP-bind 95.1 0.0088 3E-07 46.7 2.2 25 181-205 26-50 (210)
326 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.012 4.1E-07 44.3 2.9 24 181-204 7-30 (177)
327 3hjn_A DTMP kinase, thymidylat 95.1 0.027 9.1E-07 44.0 5.0 79 183-262 2-85 (197)
328 3llu_A RAS-related GTP-binding 95.1 0.013 4.6E-07 45.2 3.2 24 181-204 20-43 (196)
329 1fzq_A ADP-ribosylation factor 95.1 0.017 5.7E-07 44.1 3.7 24 181-204 16-39 (181)
330 2hxs_A RAB-26, RAS-related pro 95.1 0.013 4.5E-07 44.1 3.1 24 181-204 6-29 (178)
331 3sr0_A Adenylate kinase; phosp 95.1 0.011 3.9E-07 46.5 2.8 22 183-204 2-23 (206)
332 1r2q_A RAS-related protein RAB 95.1 0.013 4.4E-07 43.7 3.0 23 182-204 7-29 (170)
333 2yyz_A Sugar ABC transporter, 95.1 0.013 4.3E-07 50.3 3.2 24 181-204 29-52 (359)
334 1lw7_A Transcriptional regulat 95.1 0.013 4.3E-07 50.4 3.2 24 181-204 170-193 (365)
335 1nrj_B SR-beta, signal recogni 95.1 0.015 5.1E-07 45.7 3.4 26 180-205 11-36 (218)
336 3c5c_A RAS-like protein 12; GD 95.0 0.013 4.3E-07 45.0 2.9 24 181-204 21-44 (187)
337 1m2o_B GTP-binding protein SAR 95.0 0.013 4.5E-07 45.1 3.1 23 182-204 24-46 (190)
338 2it1_A 362AA long hypothetical 95.0 0.013 4.4E-07 50.4 3.2 24 181-204 29-52 (362)
339 1r8s_A ADP-ribosylation factor 95.0 0.013 4.3E-07 43.6 2.8 21 184-204 3-23 (164)
340 4b4t_I 26S protease regulatory 95.0 0.03 1E-06 49.0 5.5 51 154-204 182-239 (437)
341 3rlf_A Maltose/maltodextrin im 95.0 0.013 4.5E-07 50.6 3.2 24 181-204 29-52 (381)
342 1z0f_A RAB14, member RAS oncog 95.0 0.013 4.5E-07 44.0 3.0 25 181-205 15-39 (179)
343 2bme_A RAB4A, RAS-related prot 95.0 0.014 4.7E-07 44.4 3.1 24 181-204 10-33 (186)
344 4dsu_A GTPase KRAS, isoform 2B 95.0 0.013 4.5E-07 44.6 2.9 24 182-205 5-28 (189)
345 3iev_A GTP-binding protein ERA 95.0 0.015 5.3E-07 48.7 3.5 27 178-204 7-33 (308)
346 1g29_1 MALK, maltose transport 95.0 0.013 4.6E-07 50.5 3.2 23 182-204 30-52 (372)
347 1p5z_B DCK, deoxycytidine kina 95.0 0.01 3.5E-07 48.4 2.4 24 181-204 24-47 (263)
348 1p9r_A General secretion pathw 95.0 0.028 9.6E-07 49.2 5.2 24 181-204 167-190 (418)
349 1r6b_X CLPA protein; AAA+, N-t 95.0 0.035 1.2E-06 52.4 6.3 51 154-204 458-511 (758)
350 2y8e_A RAB-protein 6, GH09086P 95.0 0.015 5E-07 43.8 3.1 23 182-204 15-37 (179)
351 2www_A Methylmalonic aciduria 95.0 0.017 5.8E-07 49.4 3.7 24 180-203 73-96 (349)
352 1upt_A ARL1, ADP-ribosylation 95.0 0.014 4.8E-07 43.6 3.0 24 181-204 7-30 (171)
353 1v43_A Sugar-binding transport 95.0 0.014 4.8E-07 50.3 3.2 24 181-204 37-60 (372)
354 2qm8_A GTPase/ATPase; G protei 94.9 0.018 6E-07 49.0 3.8 23 181-203 55-77 (337)
355 3ld9_A DTMP kinase, thymidylat 94.9 0.033 1.1E-06 44.4 5.1 54 180-233 20-74 (223)
356 2aka_B Dynamin-1; fusion prote 94.9 0.04 1.4E-06 45.5 5.9 43 163-205 8-50 (299)
357 1moz_A ARL1, ADP-ribosylation 94.9 0.022 7.5E-07 43.1 4.0 24 181-204 18-41 (183)
358 3d31_A Sulfate/molybdate ABC t 94.9 0.011 3.9E-07 50.4 2.6 24 181-204 26-49 (348)
359 2iwr_A Centaurin gamma 1; ANK 94.9 0.011 3.9E-07 44.6 2.3 24 181-204 7-30 (178)
360 4edh_A DTMP kinase, thymidylat 94.9 0.04 1.4E-06 43.6 5.6 32 181-212 6-37 (213)
361 3cbq_A GTP-binding protein REM 94.9 0.012 4.2E-07 45.6 2.5 23 180-202 22-44 (195)
362 1zj6_A ADP-ribosylation factor 94.9 0.039 1.3E-06 42.1 5.4 24 181-204 16-39 (187)
363 2dr3_A UPF0273 protein PH0284; 94.9 0.015 5.3E-07 46.4 3.2 39 181-220 23-61 (247)
364 3t5g_A GTP-binding protein RHE 94.9 0.016 5.3E-07 43.9 3.1 24 181-204 6-29 (181)
365 3bc1_A RAS-related protein RAB 94.9 0.015 5.1E-07 44.4 3.0 24 181-204 11-34 (195)
366 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.015 5.1E-07 44.1 3.0 24 181-204 5-28 (186)
367 2p67_A LAO/AO transport system 94.9 0.018 6.2E-07 49.0 3.7 24 180-203 55-78 (341)
368 2oil_A CATX-8, RAS-related pro 94.9 0.015 5E-07 44.7 2.9 24 181-204 25-48 (193)
369 3bwd_D RAC-like GTP-binding pr 94.9 0.015 5.2E-07 43.9 3.0 23 182-204 9-31 (182)
370 2a9k_A RAS-related protein RAL 94.9 0.015 5.2E-07 44.1 3.0 24 181-204 18-41 (187)
371 2efe_B Small GTP-binding prote 94.9 0.015 5.2E-07 43.9 2.9 24 181-204 12-35 (181)
372 1tq4_A IIGP1, interferon-induc 94.9 0.031 1.1E-06 48.8 5.2 23 181-203 69-91 (413)
373 4bas_A ADP-ribosylation factor 94.9 0.018 6.1E-07 44.3 3.4 26 180-205 16-41 (199)
374 3eph_A TRNA isopentenyltransfe 94.9 0.018 6.1E-07 50.1 3.6 23 182-204 3-25 (409)
375 2obl_A ESCN; ATPase, hydrolase 94.9 0.015 5.2E-07 49.6 3.2 25 181-205 71-95 (347)
376 2bov_A RAla, RAS-related prote 94.8 0.015 5.3E-07 44.9 3.0 24 181-204 14-37 (206)
377 3kkq_A RAS-related protein M-R 94.8 0.024 8.3E-07 42.9 4.0 24 181-204 18-41 (183)
378 2atv_A RERG, RAS-like estrogen 94.8 0.016 5.3E-07 44.7 2.9 24 181-204 28-51 (196)
379 2fg5_A RAB-22B, RAS-related pr 94.8 0.016 5.6E-07 44.5 3.0 25 181-205 23-47 (192)
380 1oxx_K GLCV, glucose, ABC tran 94.8 0.01 3.5E-07 50.9 2.0 24 181-204 31-54 (353)
381 1gwn_A RHO-related GTP-binding 94.8 0.016 5.6E-07 45.3 3.1 24 181-204 28-51 (205)
382 3jvv_A Twitching mobility prot 94.8 0.028 9.7E-07 48.1 4.8 22 182-203 124-145 (356)
383 1ega_A Protein (GTP-binding pr 94.8 0.019 6.4E-07 48.0 3.6 24 181-204 8-31 (301)
384 2ewv_A Twitching motility prot 94.8 0.018 6.1E-07 49.7 3.5 23 181-203 136-158 (372)
385 1vg8_A RAS-related protein RAB 94.8 0.016 5.4E-07 45.0 2.9 25 180-204 7-31 (207)
386 1zbd_A Rabphilin-3A; G protein 94.8 0.017 5.9E-07 44.7 3.1 25 181-205 8-32 (203)
387 2gza_A Type IV secretion syste 94.8 0.014 4.8E-07 50.1 2.8 23 182-204 176-198 (361)
388 3cmu_A Protein RECA, recombina 94.8 0.063 2.1E-06 55.6 7.8 80 181-266 383-468 (2050)
389 1fx0_B ATP synthase beta chain 94.8 0.094 3.2E-06 46.6 8.0 63 166-234 155-219 (498)
390 3oes_A GTPase rhebl1; small GT 94.8 0.017 5.9E-07 44.8 3.1 25 181-205 24-48 (201)
391 1qvr_A CLPB protein; coiled co 94.8 0.028 9.6E-07 53.9 5.1 50 155-204 559-611 (854)
392 3gd7_A Fusion complex of cysti 94.8 0.018 6E-07 50.0 3.3 23 181-203 47-69 (390)
393 2g6b_A RAS-related protein RAB 94.7 0.017 5.9E-07 43.6 3.0 25 181-205 10-34 (180)
394 2ew1_A RAS-related protein RAB 94.7 0.017 6E-07 45.0 3.1 24 181-204 26-49 (201)
395 3clv_A RAB5 protein, putative; 94.7 0.017 5.9E-07 44.3 2.9 24 181-204 7-30 (208)
396 3k53_A Ferrous iron transport 94.7 0.023 8E-07 46.5 3.9 24 181-204 3-26 (271)
397 2o52_A RAS-related protein RAB 94.7 0.019 6.4E-07 44.6 3.1 24 181-204 25-48 (200)
398 2fh5_B SR-beta, signal recogni 94.7 0.017 5.9E-07 45.1 3.0 24 181-204 7-30 (214)
399 2qu8_A Putative nucleolar GTP- 94.7 0.024 8.2E-07 45.0 3.8 25 180-204 28-52 (228)
400 2q3h_A RAS homolog gene family 94.7 0.018 6.3E-07 44.4 3.0 24 181-204 20-43 (201)
401 3tkl_A RAS-related protein RAB 94.7 0.018 6.1E-07 44.2 3.0 25 181-205 16-40 (196)
402 1ksh_A ARF-like protein 2; sma 94.7 0.018 6.2E-07 43.8 2.9 25 181-205 18-42 (186)
403 1zd9_A ADP-ribosylation factor 94.7 0.018 6.3E-07 44.1 3.0 24 181-204 22-45 (188)
404 3reg_A RHO-like small GTPase; 94.7 0.018 6.3E-07 44.2 3.0 25 181-205 23-47 (194)
405 2cjw_A GTP-binding protein GEM 94.7 0.019 6.4E-07 44.4 3.0 23 181-203 6-28 (192)
406 2gf9_A RAS-related protein RAB 94.7 0.018 6.3E-07 44.0 3.0 25 181-205 22-46 (189)
407 2b6h_A ADP-ribosylation factor 94.7 0.018 6E-07 44.4 2.8 24 181-204 29-52 (192)
408 2gf0_A GTP-binding protein DI- 94.7 0.028 9.5E-07 43.2 4.0 24 181-204 8-31 (199)
409 2qmh_A HPR kinase/phosphorylas 94.6 0.021 7.3E-07 44.6 3.2 23 182-204 35-57 (205)
410 2j1l_A RHO-related GTP-binding 94.6 0.02 6.7E-07 45.0 3.1 24 181-204 34-57 (214)
411 3dz8_A RAS-related protein RAB 94.6 0.019 6.5E-07 44.0 2.9 24 181-204 23-46 (191)
412 2a5j_A RAS-related protein RAB 94.6 0.019 6.5E-07 44.0 2.9 24 181-204 21-44 (191)
413 3cmw_A Protein RECA, recombina 94.6 0.056 1.9E-06 55.2 6.8 80 181-266 383-468 (1706)
414 3lxx_A GTPase IMAP family memb 94.6 0.026 8.9E-07 45.2 3.8 26 180-205 28-53 (239)
415 1q57_A DNA primase/helicase; d 94.6 0.12 4.3E-06 46.2 8.5 51 181-233 242-292 (503)
416 1x3s_A RAS-related protein RAB 94.6 0.02 6.9E-07 43.8 3.0 23 182-204 16-38 (195)
417 2p5s_A RAS and EF-hand domain 94.5 0.02 6.7E-07 44.3 2.9 24 181-204 28-51 (199)
418 2bcg_Y Protein YP2, GTP-bindin 94.5 0.021 7.1E-07 44.4 3.0 24 181-204 8-31 (206)
419 2h17_A ADP-ribosylation factor 94.5 0.021 7.1E-07 43.4 3.0 24 181-204 21-44 (181)
420 2qag_B Septin-6, protein NEDD5 94.5 0.018 6E-07 50.6 2.8 21 184-204 45-65 (427)
421 2il1_A RAB12; G-protein, GDP, 94.5 0.018 6.3E-07 44.3 2.6 25 181-205 26-50 (192)
422 1u0j_A DNA replication protein 94.5 0.043 1.5E-06 44.9 4.9 37 164-204 91-127 (267)
423 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.017 5.8E-07 49.0 2.6 23 182-204 172-194 (330)
424 1z06_A RAS-related protein RAB 94.5 0.021 7.1E-07 43.7 2.9 24 181-204 20-43 (189)
425 2fv8_A H6, RHO-related GTP-bin 94.5 0.022 7.5E-07 44.4 3.0 23 182-204 26-48 (207)
426 2h92_A Cytidylate kinase; ross 94.5 0.018 6E-07 45.4 2.5 23 182-204 4-26 (219)
427 2atx_A Small GTP binding prote 94.5 0.022 7.6E-07 43.7 3.0 24 181-204 18-41 (194)
428 1mky_A Probable GTP-binding pr 94.5 0.056 1.9E-06 47.6 6.0 49 157-205 151-204 (439)
429 2rcn_A Probable GTPase ENGC; Y 94.4 0.022 7.7E-07 48.7 3.2 25 182-206 216-240 (358)
430 1wf3_A GTP-binding protein; GT 94.4 0.028 9.4E-07 47.0 3.7 25 180-204 6-30 (301)
431 3cmu_A Protein RECA, recombina 94.4 0.085 2.9E-06 54.6 7.8 80 181-266 1427-1512(2050)
432 2hup_A RAS-related protein RAB 94.4 0.023 7.9E-07 44.1 3.0 24 181-204 29-52 (201)
433 2h57_A ADP-ribosylation factor 94.4 0.019 6.4E-07 44.0 2.5 25 181-205 21-45 (190)
434 2npi_A Protein CLP1; CLP1-PCF1 94.4 0.018 6.1E-07 51.2 2.6 24 181-204 138-161 (460)
435 2j0v_A RAC-like GTP-binding pr 94.4 0.024 8.2E-07 44.2 3.1 24 181-204 9-32 (212)
436 3cr8_A Sulfate adenylyltranfer 94.4 0.02 6.8E-07 52.0 2.8 24 181-204 369-392 (552)
437 2gco_A H9, RHO-related GTP-bin 94.3 0.025 8.4E-07 43.9 3.1 23 182-204 26-48 (201)
438 2g3y_A GTP-binding protein GEM 94.3 0.024 8.3E-07 44.7 3.0 23 181-203 37-59 (211)
439 2yv5_A YJEQ protein; hydrolase 94.3 0.025 8.5E-07 47.3 3.2 33 163-205 156-188 (302)
440 3cph_A RAS-related protein SEC 94.3 0.024 8.1E-07 44.1 2.9 24 181-204 20-43 (213)
441 3ozx_A RNAse L inhibitor; ATP 94.3 0.031 1.1E-06 50.6 4.0 24 181-204 25-48 (538)
442 3ea0_A ATPase, para family; al 94.3 0.031 1E-06 44.7 3.6 25 180-204 3-28 (245)
443 2qe7_A ATP synthase subunit al 94.3 0.061 2.1E-06 47.9 5.7 61 165-233 151-214 (502)
444 1yqt_A RNAse L inhibitor; ATP- 94.3 0.024 8.3E-07 51.4 3.2 24 182-205 313-336 (538)
445 2r8r_A Sensor protein; KDPD, P 94.2 0.024 8.4E-07 45.2 2.8 24 182-205 7-30 (228)
446 2dpy_A FLII, flagellum-specifi 94.2 0.025 8.6E-07 49.9 3.2 25 181-205 157-181 (438)
447 2f7s_A C25KG, RAS-related prot 94.2 0.027 9.4E-07 44.1 3.1 24 181-204 25-48 (217)
448 3ozx_A RNAse L inhibitor; ATP 94.2 0.024 8.1E-07 51.4 3.0 24 182-205 295-318 (538)
449 3q3j_B RHO-related GTP-binding 94.2 0.026 8.9E-07 44.3 3.0 24 181-204 27-50 (214)
450 3f9v_A Minichromosome maintena 94.2 0.019 6.4E-07 52.8 2.4 22 183-204 329-350 (595)
451 2fu5_C RAS-related protein RAB 94.2 0.015 5.1E-07 44.1 1.5 24 181-204 8-31 (183)
452 2qag_C Septin-7; cell cycle, c 94.2 0.023 7.9E-07 49.8 2.8 23 181-204 32-54 (418)
453 2xtp_A GTPase IMAP family memb 94.2 0.037 1.3E-06 44.8 3.9 25 181-205 22-46 (260)
454 3def_A T7I23.11 protein; chlor 94.2 0.073 2.5E-06 43.3 5.7 26 180-205 35-60 (262)
455 2r9v_A ATP synthase subunit al 94.2 0.09 3.1E-06 46.9 6.5 61 165-233 164-227 (515)
456 4dhe_A Probable GTP-binding pr 94.1 0.022 7.5E-07 44.8 2.4 25 181-205 29-53 (223)
457 4gzl_A RAS-related C3 botulinu 94.1 0.036 1.2E-06 43.1 3.6 24 181-204 30-53 (204)
458 4dkx_A RAS-related protein RAB 94.1 0.028 9.5E-07 44.6 3.0 22 183-204 15-36 (216)
459 3euj_A Chromosome partition pr 94.1 0.028 9.7E-07 50.1 3.2 22 182-203 30-51 (483)
460 1yqt_A RNAse L inhibitor; ATP- 94.1 0.028 9.5E-07 51.0 3.2 24 181-204 47-70 (538)
461 1jwy_B Dynamin A GTPase domain 94.1 0.068 2.3E-06 44.5 5.5 27 179-205 22-48 (315)
462 3ch4_B Pmkase, phosphomevalona 94.1 0.043 1.5E-06 42.9 3.9 25 180-204 10-34 (202)
463 2x77_A ADP-ribosylation factor 94.1 0.023 7.7E-07 43.4 2.3 24 181-204 22-45 (189)
464 1f2t_A RAD50 ABC-ATPase; DNA d 94.1 0.038 1.3E-06 41.0 3.4 21 182-202 24-44 (149)
465 3k9g_A PF-32 protein; ssgcid, 94.1 0.029 1E-06 45.7 3.1 26 180-205 26-52 (267)
466 1h65_A Chloroplast outer envel 94.1 0.079 2.7E-06 43.3 5.7 25 181-205 39-63 (270)
467 4dzz_A Plasmid partitioning pr 94.0 0.029 9.8E-07 43.5 2.8 23 182-204 2-25 (206)
468 3vr4_D V-type sodium ATPase su 94.0 0.046 1.6E-06 48.2 4.3 63 165-233 140-207 (465)
469 3gmt_A Adenylate kinase; ssgci 94.0 0.03 1E-06 44.9 2.8 24 181-204 8-31 (230)
470 3kjh_A CO dehydrogenase/acetyl 93.9 0.024 8.1E-07 45.4 2.3 22 183-204 2-23 (254)
471 3bk7_A ABC transporter ATP-bin 93.9 0.03 1E-06 51.5 3.2 24 182-205 383-406 (607)
472 3fdi_A Uncharacterized protein 93.9 0.035 1.2E-06 43.4 3.2 23 182-204 7-29 (201)
473 2qtf_A Protein HFLX, GTP-bindi 93.9 0.034 1.1E-06 47.8 3.3 26 180-205 178-203 (364)
474 3fkq_A NTRC-like two-domain pr 93.9 0.042 1.4E-06 47.3 3.9 27 178-204 140-167 (373)
475 2axn_A 6-phosphofructo-2-kinas 93.9 0.037 1.3E-06 49.9 3.7 24 181-204 35-58 (520)
476 1u0l_A Probable GTPase ENGC; p 93.9 0.033 1.1E-06 46.5 3.1 33 163-204 160-192 (301)
477 3t5d_A Septin-7; GTP-binding p 93.9 0.031 1.1E-06 45.9 2.9 23 182-204 9-31 (274)
478 1t9h_A YLOQ, probable GTPase E 93.8 0.017 5.8E-07 48.5 1.2 23 182-204 174-196 (307)
479 3lxw_A GTPase IMAP family memb 93.8 0.035 1.2E-06 44.8 3.1 25 181-205 21-45 (247)
480 3iby_A Ferrous iron transport 93.8 0.039 1.3E-06 44.9 3.3 23 182-204 2-24 (256)
481 3j16_B RLI1P; ribosome recycli 93.8 0.033 1.1E-06 51.2 3.2 24 182-205 379-402 (608)
482 3b60_A Lipid A export ATP-bind 93.8 0.035 1.2E-06 50.8 3.3 24 181-204 369-392 (582)
483 2orw_A Thymidine kinase; TMTK, 93.7 0.039 1.3E-06 42.5 3.1 22 182-203 4-25 (184)
484 3j16_B RLI1P; ribosome recycli 93.7 0.036 1.2E-06 51.0 3.2 24 181-204 103-126 (608)
485 3cpj_B GTP-binding protein YPT 93.7 0.037 1.3E-06 43.7 2.9 24 181-204 13-36 (223)
486 3b5x_A Lipid A export ATP-bind 93.6 0.038 1.3E-06 50.6 3.2 24 181-204 369-392 (582)
487 3b1v_A Ferrous iron uptake tra 93.6 0.051 1.7E-06 44.7 3.7 24 181-204 3-26 (272)
488 2qag_A Septin-2, protein NEDD5 93.6 0.032 1.1E-06 47.9 2.5 22 183-204 39-60 (361)
489 3bk7_A ABC transporter ATP-bin 93.5 0.037 1.3E-06 50.9 3.0 24 181-204 117-140 (607)
490 2oap_1 GSPE-2, type II secreti 93.5 0.06 2E-06 48.5 4.3 23 182-204 261-283 (511)
491 1bif_A 6-phosphofructo-2-kinas 93.5 0.046 1.6E-06 48.6 3.5 24 181-204 39-62 (469)
492 3v9p_A DTMP kinase, thymidylat 93.5 0.033 1.1E-06 44.6 2.3 25 181-205 25-49 (227)
493 3cwq_A Para family chromosome 93.5 0.043 1.5E-06 43.1 2.9 22 183-204 2-24 (209)
494 3q9l_A Septum site-determining 93.4 0.049 1.7E-06 43.9 3.3 23 182-204 3-26 (260)
495 2e87_A Hypothetical protein PH 93.4 0.047 1.6E-06 46.7 3.3 26 180-205 166-191 (357)
496 3gqb_B V-type ATP synthase bet 93.4 0.044 1.5E-06 48.3 3.1 97 165-266 136-258 (464)
497 1m8p_A Sulfate adenylyltransfe 93.4 0.059 2E-06 49.2 4.0 25 180-204 395-419 (573)
498 1ypw_A Transitional endoplasmi 93.3 0.04 1.4E-06 52.5 2.9 53 153-205 476-535 (806)
499 4hlc_A DTMP kinase, thymidylat 93.3 0.055 1.9E-06 42.5 3.3 24 182-205 3-26 (205)
500 1x6v_B Bifunctional 3'-phospho 93.3 0.057 2E-06 49.7 3.9 25 180-204 51-75 (630)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.84 E-value=1.1e-20 Score=173.29 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=92.7
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHc--cccccC-CCceEEEEecCCC--CHHHHHHHH
Q 045226 157 YGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYN--DKRVED-FKPKAWVCVSDDF--DVLRISKAI 231 (266)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~--~~~~~~-F~~~~wv~vs~~~--~~~~i~~~i 231 (266)
+||+.++++|.++|.... ....++|+||||||+||||||+.+|+ +.+++. |++++||++++.+ +...+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997642 23579999999999999999999998 677888 9999999999985 899999999
Q ss_pred HHHhcCCCC-------CCCChHHHHHHHHHHcCCc-eEEEEeC
Q 045226 232 LESITLSSC-------DLKDLNSVQLKLKEALLKK-KFFDCLG 266 (266)
Q Consensus 232 l~~l~~~~~-------~~~~~~~~~~~l~~~L~~k-r~LiVLD 266 (266)
+.+++.... +..+.+.++..|++.|.+| |||||||
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLD 250 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFD 250 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999986521 2335677899999999996 9999998
No 2
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.71 E-value=4.8e-18 Score=123.17 Aligned_cols=69 Identities=28% Similarity=0.502 Sum_probs=64.7
Q ss_pred ChHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHhc--ccCcHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 045226 2 SPQLLKLAGQEGVRAKLKKWEETLKTIEAVLIDAEEK--QLSDRAVKLWLDDLRDLAYDAEDILDEFAAEA 70 (266)
Q Consensus 2 s~~~~e~~~~~~v~~~~~~L~~~L~~i~~~l~~ae~~--~~~~~~~~~Wl~~lr~~aydaeD~lD~~~~~~ 70 (266)
|.+.+||.+..||++++++|+++|+.|++||.+++.+ +..++.++.|+.+||++|||+|||||+|.++.
T Consensus 12 ~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 12 ELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999988 56899999999999999999999999999877
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.67 E-value=5e-17 Score=154.77 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=86.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCc-eEEEEecCCCCHHHHHHHHH
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKP-KAWVCVSDDFDVLRISKAIL 232 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~-~~wv~vs~~~~~~~i~~~il 232 (266)
..+||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.++.. |++ ++||++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34999999999999998643 278999999999999999999999887888 986 89999999999989888888
Q ss_pred HHhcCCC---CCC--------CChHHHHHHHHHHc---CCceEEEEeC
Q 045226 233 ESITLSS---CDL--------KDLNSVQLKLKEAL---LKKKFFDCLG 266 (266)
Q Consensus 233 ~~l~~~~---~~~--------~~~~~~~~~l~~~L---~~kr~LiVLD 266 (266)
..+.... ... .+.+.+...|++.| .+||||||||
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLD 251 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEE
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 7543211 110 13455677788766 7899999998
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.66 E-value=1.7e-16 Score=157.48 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=89.3
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccc-cC-C-CceEEEEecCCCC--HH
Q 045226 151 TSEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRV-ED-F-KPKAWVCVSDDFD--VL 225 (266)
Q Consensus 151 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~-~~-F-~~~~wv~vs~~~~--~~ 225 (266)
.....++||+.++++|.++|...+ ...++|+|+||||+||||||+.+|++.++ .. | +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997543 24799999999999999999999998643 44 5 6777999998654 34
Q ss_pred HHHHHHHHHhcCCCC----CCCChHHHHHHHHHHcCCc--eEEEEeC
Q 045226 226 RISKAILESITLSSC----DLKDLNSVQLKLKEALLKK--KFFDCLG 266 (266)
Q Consensus 226 ~i~~~il~~l~~~~~----~~~~~~~~~~~l~~~L~~k--r~LiVLD 266 (266)
..+..++..+..... ...+.+.+.+.|+..|.+| |||||||
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlD 243 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILD 243 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEE
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEe
Confidence 446777777765432 2356788999999999888 9999998
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=133.97 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=83.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccc-cC-C-CceEEEEecCCCCHHHHHH
Q 045226 153 EPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRV-ED-F-KPKAWVCVSDDFDVLRISK 229 (266)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~-~~-F-~~~~wv~vs~~~~~~~i~~ 229 (266)
...+|||+.+++.|.++|.... ...++|+|+||||+||||||..+|++..+ .. | +.++||+++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3568999999999999997532 24689999999999999999999998765 67 9 58999999876 4444444
Q ss_pred HH---HHHhcCC----CCCCCChHHHHHHHHHHcCC--ceEEEEeC
Q 045226 230 AI---LESITLS----SCDLKDLNSVQLKLKEALLK--KKFFDCLG 266 (266)
Q Consensus 230 ~i---l~~l~~~----~~~~~~~~~~~~~l~~~L~~--kr~LiVLD 266 (266)
.+ +..++.. .....+.+.+...|...|.+ +++|||||
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLD 243 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILD 243 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEe
Confidence 44 3344421 12345677888889998876 78999998
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.06 E-value=3.4e-10 Score=99.46 Aligned_cols=113 Identities=17% Similarity=0.124 Sum_probs=80.4
Q ss_pred CCccccchhhHHHHHHHH-hcCCCCC-CCCcEEEEE--EecCCCcHHHHHHHHHcccccc---C-CC-ceEEEEecCCCC
Q 045226 153 EPAVYGRDTEKARVLDMV-LKNDPCD-AANFRVIAL--VGMGGIGKTTLAQEVYNDKRVE---D-FK-PKAWVCVSDDFD 223 (266)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L-~~~~~~~-~~~~~vi~I--vG~gGvGKTtLA~~v~~~~~~~---~-F~-~~~wv~vs~~~~ 223 (266)
+..++||+.+++.|.++| ..... + ......+.| +|++|+||||||+.+++..... . |+ ..+|+++....+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~-~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLS-GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHT-SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCChHHHHHHHHHHHhHHHhc-CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 367999999999999998 42110 0 012345555 9999999999999999874321 1 23 357777767788
Q ss_pred HHHHHHHHHHHhcCCCCC-CCChHHHHHHHHHHcC--CceEEEEeC
Q 045226 224 VLRISKAILESITLSSCD-LKDLNSVQLKLKEALL--KKKFFDCLG 266 (266)
Q Consensus 224 ~~~i~~~il~~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LiVLD 266 (266)
...++..|+.+++..... ..+...+...+.+.|. +++++||||
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlD 145 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILD 145 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 999999999998764332 2345666777777775 679999998
No 7
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.92 E-value=6.2e-09 Score=90.42 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=82.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcccccc----CCC-ceEEEEecCCCCHHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVE----DFK-PKAWVCVSDDFDVLRIS 228 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~----~F~-~~~wv~vs~~~~~~~i~ 228 (266)
..++|++.+++.+..+|...- .......+.|+|++|+||||||+.+++...-. ... ..+|++.+...+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 679999999999999985421 01235688999999999999999999863211 112 45778888888899999
Q ss_pred HHHHHHhcCCCCC-CCChHHHHHHHHHHc--CCceEEEEeC
Q 045226 229 KAILESITLSSCD-LKDLNSVQLKLKEAL--LKKKFFDCLG 266 (266)
Q Consensus 229 ~~il~~l~~~~~~-~~~~~~~~~~l~~~L--~~kr~LiVLD 266 (266)
..++.+++..... ..+..++...+.+.+ .+++.+||||
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilD 137 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLD 137 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc
Confidence 9999999764332 234566677777777 4568899987
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.89 E-value=2.8e-09 Score=92.48 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=79.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-C--C-ceEEEEecCCCCHHHHH
Q 045226 153 EPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-F--K-PKAWVCVSDDFDVLRIS 228 (266)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F--~-~~~wv~vs~~~~~~~i~ 228 (266)
+..++||+.+++.+.++|...-. ......+.|+|++|+||||||+.+++.. .. | + ..+|++.+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSKL--HKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHHH--HHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHHH--HHHhcCCceEEEEECCCCCCHHHHH
Confidence 36799999999999999875210 1235688999999999999999999863 33 4 2 45677776777788888
Q ss_pred HHHHHHhcCCCC-CCCChHHHHHHHHHHcC--CceEEEEeC
Q 045226 229 KAILESITLSSC-DLKDLNSVQLKLKEALL--KKKFFDCLG 266 (266)
Q Consensus 229 ~~il~~l~~~~~-~~~~~~~~~~~l~~~L~--~kr~LiVLD 266 (266)
..++.+++.... ...+..++...+.+.+. +++.+||||
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilD 135 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLD 135 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc
Confidence 888888764432 12345566666666664 458899987
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.87 E-value=7.9e-09 Score=89.90 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=81.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccc----cC-C-C-ceEEEEecCCC-CHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRV----ED-F-K-PKAWVCVSDDF-DVL 225 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~----~~-F-~-~~~wv~vs~~~-~~~ 225 (266)
..++|++.+++.+.++|..-.. +.....+.|+|++|+||||||+.+++...- .. + . ..+|++.+... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988765210 123568999999999999999999986311 11 2 2 45777777767 888
Q ss_pred HHHHHHHHHhcCCCC--CCCChHHHHHHHHHHcCCceEEEEeC
Q 045226 226 RISKAILESITLSSC--DLKDLNSVQLKLKEALLKKKFFDCLG 266 (266)
Q Consensus 226 ~i~~~il~~l~~~~~--~~~~~~~~~~~l~~~L~~kr~LiVLD 266 (266)
.++..++.++.+... ...+...+...+.+.+..++.+||||
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilD 140 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLD 140 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEE
Confidence 899999998843322 22345667788888888777688887
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.86 E-value=1.3e-08 Score=88.47 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=80.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCC-CceEEEEecCCCCHHHHHHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDF-KPKAWVCVSDDFDVLRISKAIL 232 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~il 232 (266)
..++||+.+++.+.++|...-....+..+.+.|+|+.|+|||||++.+.+..... . -..+|++.+...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDK-TTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS-CCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh-cCeeEEEEeCccCCCHHHHHHHHH
Confidence 6799999999999999875210001123489999999999999999999873221 2 2456777778888889999999
Q ss_pred HHhcCCCCC-CCChHHHHHHHHHHcC--CceEEEEeC
Q 045226 233 ESITLSSCD-LKDLNSVQLKLKEALL--KKKFFDCLG 266 (266)
Q Consensus 233 ~~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LiVLD 266 (266)
..++..... ..+...+...+.+.+. +++.+||||
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilD 132 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLD 132 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 988654322 2345666666666663 567888887
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.81 E-value=8.6e-09 Score=88.29 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=72.0
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCC------CHH
Q 045226 152 SEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDF------DVL 225 (266)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~------~~~ 225 (266)
.+..++||+.+.+.|.+++..+ .++.|+|+.|+|||||++.+.+. .+ .+|+++.... +..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNE-----RP-GILIDCRELYAERGHITRE 75 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHH-----SS-EEEEEHHHHHHTTTCBCHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHH-----cC-cEEEEeecccccccCCCHH
Confidence 3457999999999999998642 58999999999999999999876 22 6777765432 566
Q ss_pred HHHHHHHHHhcC---------------C-CC--CCCChHHHHHHHHHHcCC-ceEEEEeC
Q 045226 226 RISKAILESITL---------------S-SC--DLKDLNSVQLKLKEALLK-KKFFDCLG 266 (266)
Q Consensus 226 ~i~~~il~~l~~---------------~-~~--~~~~~~~~~~~l~~~L~~-kr~LiVLD 266 (266)
.++..+...+.. . .. ...+..++.+.+.+.+.. ++++||||
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlD 135 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFD 135 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEe
Confidence 677777665542 0 00 123556666677666643 38999998
No 12
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.64 E-value=5.8e-08 Score=82.30 Aligned_cols=109 Identities=8% Similarity=0.045 Sum_probs=72.2
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC----CC--ceEEEEecCCCCHHHHHH
Q 045226 156 VYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED----FK--PKAWVCVSDDFDVLRISK 229 (266)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~----F~--~~~wv~vs~~~~~~~i~~ 229 (266)
+.||+++.+.|...|...- .+.....+-|+|++|+|||++++.|.+...... .. ..+.|+.....+...++.
T Consensus 22 L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 7899999999998876521 112367889999999999999999998753211 11 245666667778889999
Q ss_pred HHHHHhcCCCCCC-CChHHHHHHHHHH--cCCceEEEEeC
Q 045226 230 AILESITLSSCDL-KDLNSVQLKLKEA--LLKKKFFDCLG 266 (266)
Q Consensus 230 ~il~~l~~~~~~~-~~~~~~~~~l~~~--L~~kr~LiVLD 266 (266)
.|++++.+..... ...+.+...+... -.++.++|+||
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lD 139 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQ 139 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEE
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEe
Confidence 9999997553222 2333343333332 24567899987
No 13
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.59 E-value=2e-07 Score=79.89 Aligned_cols=69 Identities=10% Similarity=0.223 Sum_probs=50.7
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCC-----CCHHH
Q 045226 152 SEPAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDD-----FDVLR 226 (266)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~-----~~~~~ 226 (266)
.+..++||+.+.+.|.+ +.. .++.|+|+.|+|||||++.+.+... . ..+|+++... .+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN---L-PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT---C-CEEEEEGGGGTTCSCCCHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC---C-CEEEEEchhhccccCCCHHH
Confidence 34578999999999999 632 4899999999999999999987632 1 2578887642 34455
Q ss_pred HHHHHHHH
Q 045226 227 ISKAILES 234 (266)
Q Consensus 227 i~~~il~~ 234 (266)
++..+...
T Consensus 77 ~~~~l~~~ 84 (357)
T 2fna_A 77 FLLELQKE 84 (357)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.31 E-value=2.4e-06 Score=67.78 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=48.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCC-ceEEEEecCCCCHHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFK-PKAWVCVSDDFDVLRIS 228 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~-~~~wv~vs~~~~~~~i~ 228 (266)
.+++|++..++.+.+++.... ...+.|+|++|+|||+||+.+++......+. ..+.++.+...+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH
Confidence 468999999999999997653 2348999999999999999998763212122 34445555555544443
No 15
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.23 E-value=3.1e-06 Score=67.99 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=40.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|++..++.+..++..+.. ...+.|+|++|+||||||+.+++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~-----~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCC-----CSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999976542 3588999999999999999998764
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=5.3e-06 Score=70.01 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=49.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCC-CceEEEEecCCCCHHHHHHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDF-KPKAWVCVSDDFDVLRISKAIL 232 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~il 232 (266)
.+++|++..++.+.+++..+. ...+-|+|++|+||||+|+.+++...-..+ ...++++.+...... .+++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID-VVRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHH-HHHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChH-HHHHHH
Confidence 468999999999999987654 223889999999999999999886321112 234455544444433 334444
Q ss_pred HH
Q 045226 233 ES 234 (266)
Q Consensus 233 ~~ 234 (266)
..
T Consensus 94 ~~ 95 (323)
T 1sxj_B 94 KH 95 (323)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.03 E-value=5.3e-06 Score=64.16 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=39.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..++|++..++.+.+++.... ...+.|+|+.|+|||+||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999987643 3567899999999999999998763
No 18
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.94 E-value=7.7e-06 Score=63.04 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=38.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..++|++.+++.+.+++.... ...+-|+|+.|+|||+||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999997643 3456899999999999999998763
No 19
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.70 E-value=9.8e-05 Score=58.00 Aligned_cols=55 Identities=22% Similarity=0.214 Sum_probs=36.1
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEec
Q 045226 162 EKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVS 219 (266)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs 219 (266)
..+.+.+++..... ......+.|+|++|+|||+||+.+++..... ....+|++++
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~~~ 91 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEEHH
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEhH
Confidence 44556666654431 1122678899999999999999999874211 4455666643
No 20
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.69 E-value=0.00022 Score=56.46 Aligned_cols=81 Identities=22% Similarity=0.123 Sum_probs=50.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcC-----------CCCC-CCChHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITL-----------SSCD-LKDLNSV 248 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~-----------~~~~-~~~~~~~ 248 (266)
-.++.|+|.+|+|||||+..+.. . .-..++|++....++...+.. ++..++. .... ..+..+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 46999999999999999999876 1 134677888776666655443 3333221 1111 1122334
Q ss_pred HHHHHHHcCCceEEEEeC
Q 045226 249 QLKLKEALLKKKFFDCLG 266 (266)
Q Consensus 249 ~~~l~~~L~~kr~LiVLD 266 (266)
...++..+..+.-+||||
T Consensus 95 ~~~~~~l~~~~~~lliiD 112 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVD 112 (220)
T ss_dssp HHHHHHHCCTTEEEEEEE
T ss_pred HHHHHHHhhcCCCEEEEc
Confidence 555666665446678877
No 21
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.67 E-value=5.9e-05 Score=58.20 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 160 DTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 160 ~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
....+.+.+++..-. ......+.|+|+.|+||||||+.+++..
T Consensus 20 ~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 20 NRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 344455555554322 1124689999999999999999998874
No 22
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.61 E-value=9.8e-05 Score=66.01 Aligned_cols=45 Identities=29% Similarity=0.488 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|++.+++.+++.|.... ..-+-++|++|+|||+||+.+...
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997643 234569999999999999998876
No 23
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=0.00011 Score=66.43 Aligned_cols=51 Identities=27% Similarity=0.340 Sum_probs=40.1
Q ss_pred CccccchhhHHHHHHHHhcCC-----------CCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKND-----------PCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|++..++.|.+||.... ..+....+.+-|+|+.|+||||||+.+.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999997510 000113468999999999999999999987
No 24
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.46 E-value=0.00033 Score=67.29 Aligned_cols=46 Identities=30% Similarity=0.500 Sum_probs=38.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..++|++.++..+++.|.... ..-+.++|++|+||||||+.+.+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999997654 2346789999999999999998763
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.45 E-value=0.00061 Score=57.76 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHhc----CCC--CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLK----NDP--CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+.+.. .+. ......+-+-++|+.|+|||+||+.+.+.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 4789999888888776531 100 01123467889999999999999999986
No 26
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.44 E-value=0.0002 Score=67.85 Aligned_cols=45 Identities=29% Similarity=0.488 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|++.+++.+++.|.... ..-+-++|++|+|||++|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997644 233679999999999999998876
No 27
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00015 Score=61.09 Aligned_cols=45 Identities=22% Similarity=0.337 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|++..++.+.+++..+. ...+-++|++|+||||+|+.+++.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHH
Confidence 358999999999999987654 334899999999999999999886
No 28
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.42 E-value=0.00011 Score=62.06 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=45.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHH
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRIS 228 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~ 228 (266)
.+++|++..+..+..++..... .......+-|+|+.|+|||+||+.+++.. .. ..++++.+.......+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~--~~~~~~~~~~~~~~~l~ 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV--NLRVTSGPAIEKPGDLA 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC--CEEEECTTTCCSHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC--CEEEEeccccCChHHHH
Confidence 4689999998888888753110 01123568899999999999999998863 11 22455544444444433
No 29
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.38 E-value=0.00011 Score=54.68 Aligned_cols=47 Identities=17% Similarity=0.074 Sum_probs=34.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
+++|....+..+.+.+..-.. ...-|-|+|..|+|||+||+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999888888754211 11336799999999999999999863
No 30
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.36 E-value=0.00014 Score=60.28 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDP-------CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+++...-. .+.....-+-|+|++|+|||+||+.+.+.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999998887743100 00012456889999999999999999876
No 31
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.35 E-value=9.5e-05 Score=62.39 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=40.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEe--cCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcCC
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCV--SDDFDVLRISKAILESITLSSCDLKDLNSVQLKLKEALLK 258 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~ 258 (266)
-+++-|+|++|+|||+||.++... .-..++|+++ +...+. -..+.+.....+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~----~G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA----LGGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH----HHTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh----CCCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHhh
Confidence 367789999999999999998764 2123456666 332110 003445555555555554
Q ss_pred ceEEEEeC
Q 045226 259 KKFFDCLG 266 (266)
Q Consensus 259 kr~LiVLD 266 (266)
.+ +||+|
T Consensus 183 ~~-LLVID 189 (331)
T 2vhj_A 183 HR-VIVID 189 (331)
T ss_dssp CS-EEEEE
T ss_pred CC-EEEEe
Confidence 45 77766
No 32
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.32 E-value=0.0011 Score=56.02 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=39.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.+.+++..+.. ..++-+.|+.|+|||++|+.+.+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~-----~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKI-----PHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCC-----CSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCC-----CeEEEeeCcCCCCHHHHHHHHHHH
Confidence 5789999999999999986542 467888899999999999999876
No 33
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.32 E-value=0.0002 Score=61.56 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=39.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|++..++.+.+++..+.. ...+-|+|+.|+||||||+.+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~-----~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC-----CSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999976542 3578899999999999999987753
No 34
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.31 E-value=0.00033 Score=55.09 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 159 RDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 159 r~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++..++.|.+.+.... .....+|+|+|+.|+|||||++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556777888877532 224689999999999999999998764
No 35
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.29 E-value=0.0011 Score=62.67 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|++.++..+++.|.... ..-+-++|..|+|||+||+.+.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999997654 345679999999999999998875
No 36
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.25 E-value=0.00077 Score=56.46 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+++++|.+|+||||++..+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999988654
No 37
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.23 E-value=0.00021 Score=60.96 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..++.+..++..+. ...+.++|+.|+||||||+.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999987653 2238899999999999999998763
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.22 E-value=0.00033 Score=57.15 Aligned_cols=51 Identities=29% Similarity=0.295 Sum_probs=34.7
Q ss_pred CccccchhhHHHHHHHH---hcCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMV---LKNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+++ ..... -+.....-+-|+|++|+|||+||+.+.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899987776665544 22210 00122355779999999999999999886
No 39
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.21 E-value=0.0013 Score=53.54 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=33.6
Q ss_pred CccccchhhHHHHHHH---HhcCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDM---VLKNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.+.+. +..... -+.....-+.|+|+.|+||||||+.+.+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4689988777665544 332110 00111234789999999999999999876
No 40
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.21 E-value=0.0016 Score=57.72 Aligned_cols=51 Identities=27% Similarity=0.356 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhc----CCC-C-CCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLK----NDP-C-DAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~-~-~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+.+.. ... . .....+-+-++|++|+|||+||+.+.+.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999988888887631 110 0 0123467889999999999999999986
No 41
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.20 E-value=0.00082 Score=57.69 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=53.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHH
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKLKE 254 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l~~ 254 (266)
.-.++.|.|++|+||||||..+....... =..++|++....++.. .+++++.... ...+.++....+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 35799999999999999999988652211 2356788887777754 4455544321 23456666666666
Q ss_pred HcC-CceEEEEeC
Q 045226 255 ALL-KKKFFDCLG 266 (266)
Q Consensus 255 ~L~-~kr~LiVLD 266 (266)
.+. .+--++|+|
T Consensus 134 l~~~~~~dlvVID 146 (356)
T 3hr8_A 134 LVRSGVVDLIVVD 146 (356)
T ss_dssp HHHTSCCSEEEEE
T ss_pred HhhhcCCCeEEeh
Confidence 553 344466666
No 42
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.20 E-value=0.0004 Score=58.16 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=35.2
Q ss_pred ccccchhhHHHHHHHHhcC---------CCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 155 AVYGRDTEKARVLDMVLKN---------DPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~---------~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
+++|.+..++.|.+++... ..........+-|+|++|+|||+||+.+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4788888887777655321 00011234578999999999999999877653
No 43
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.18 E-value=0.00059 Score=54.57 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=36.8
Q ss_pred ccccc---hhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEec
Q 045226 155 AVYGR---DTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVS 219 (266)
Q Consensus 155 ~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs 219 (266)
+++|. +...+.+..++.... ...+.|+|+.|+||||||+.+.+..... .....|++.+
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~------~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~ 89 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDG------VQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLG 89 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCS------CSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGG
T ss_pred hccCCCCCHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHH
Confidence 45652 344555555554332 4678899999999999999998763211 2344555544
No 44
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.17 E-value=0.00016 Score=61.56 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.+..++..... .......+-|+|+.|+|||+||+.+.+.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999888865210 0112456889999999999999999776
No 45
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.14 E-value=0.00034 Score=58.66 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|++..++.+.+++..+. ...+-++|+.|+|||++|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHH
Confidence 468999999999998886543 233889999999999999999876
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.13 E-value=0.00041 Score=58.17 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhcC---C----CCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKN---D----PCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---~----~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..++.|.+++... . .-+-.....+.|+|+.|+|||+||+.+.+..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46899998888888776421 0 0001124678999999999999999999863
No 47
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.11 E-value=0.0023 Score=56.44 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 163 KARVLDMVLKNDPC---DAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 163 ~~~l~~~L~~~~~~---~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++.++|.....+ .....++|.++|.+|+||||++..+...
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666542210 1235789999999999999999887643
No 48
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.11 E-value=0.00057 Score=56.92 Aligned_cols=51 Identities=29% Similarity=0.356 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCC------CCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKND------PCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+++.... ..-......+.|+|+.|+||||||+.+.+.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999998888764310 000112467889999999999999999886
No 49
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.08 E-value=0.00015 Score=53.81 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=32.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|....+..+.+.+..-.. ...-|-|+|..|+|||+||+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3578998888888887654111 1123679999999999999999886
No 50
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.08 E-value=0.0014 Score=56.48 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=53.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKLKEA 255 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l~~~ 255 (266)
-.++-|.|.+|+||||||..+..... ..=..++|++....++.. .++.++.... ...+.+++...+...
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~-~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ-KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH-HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 46888999999999999988776521 113478899988877754 2444443211 234567777777766
Q ss_pred cCC-ceEEEEeC
Q 045226 256 LLK-KKFFDCLG 266 (266)
Q Consensus 256 L~~-kr~LiVLD 266 (266)
++. +--+||+|
T Consensus 148 ~~~~~~~lVVID 159 (366)
T 1xp8_A 148 VRSGAIDVVVVD 159 (366)
T ss_dssp HTTTCCSEEEEE
T ss_pred HhcCCCCEEEEe
Confidence 643 34577776
No 51
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.05 E-value=0.00057 Score=54.00 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 162 EKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+.|.+.+... .....+|+|+|+.|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555655432 123679999999999999999998765
No 52
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.04 E-value=0.00045 Score=61.30 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=37.1
Q ss_pred CccccchhhH---HHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEK---ARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..+ ..|...+..+. +..+-|+|+.|+||||||+.+.+.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~------~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH------LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC------CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC------CcEEEEECCCCCcHHHHHHHHHHH
Confidence 4688988777 66777776554 578899999999999999999987
No 53
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.03 E-value=0.00077 Score=57.89 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=36.4
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKAR---VLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..++. +.+.+..+.. ....+-|+|+.|+|||+||+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~----~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKI----AGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999887665 4555554331 23688999999999999999999874
No 54
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.03 E-value=0.0024 Score=54.07 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=54.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccC-C----CceEEEEecCCCCHHHHHHHHHHHhcCCC---------CCCCChH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVED-F----KPKAWVCVSDDFDVLRISKAILESITLSS---------CDLKDLN 246 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F----~~~~wv~vs~~~~~~~i~~~il~~l~~~~---------~~~~~~~ 246 (266)
-.++.|+|.+|+||||||..+........ + ..++|++....++...+. .+++.++... ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46999999999999999988876532221 1 367899988888777654 4455554321 0122333
Q ss_pred ---HHHHHHHHHcC--CceEEEEeC
Q 045226 247 ---SVQLKLKEALL--KKKFFDCLG 266 (266)
Q Consensus 247 ---~~~~~l~~~L~--~kr~LiVLD 266 (266)
++...+...+. .+--+||+|
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVID 210 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVD 210 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEET
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEe
Confidence 24445555553 456688887
No 55
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.01 E-value=0.0011 Score=56.99 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=50.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKLKEA 255 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l~~~ 255 (266)
-.++-|.|.+|+||||||..+..... ..=..++|++....++... +..++.... ...+.+++.+.+...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~-~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 46999999999999999988776521 1124688999888777542 344443211 123455555555544
Q ss_pred cC-CceEEEEeC
Q 045226 256 LL-KKKFFDCLG 266 (266)
Q Consensus 256 L~-~kr~LiVLD 266 (266)
.+ .+--+||+|
T Consensus 137 ~~~~~~~lVVID 148 (356)
T 1u94_A 137 ARSGAVDVIVVD 148 (356)
T ss_dssp HHHTCCSEEEEE
T ss_pred HhccCCCEEEEc
Confidence 42 344477776
No 56
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.99 E-value=0.00057 Score=57.06 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=43.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHccccccC--CCceEEEEecCCCCHHHHHHHHHHHh------cCC-CCCCCChHHHH
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYNDKRVED--FKPKAWVCVSDDFDVLRISKAILESI------TLS-SCDLKDLNSVQ 249 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~--F~~~~wv~vs~~~~~~~i~~~il~~l------~~~-~~~~~~~~~~~ 249 (266)
....+|+|+|..|+||||||+.+........ ......|+...-+-.......+.... ... .+...+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 3568999999999999999998876532211 12333334332222233344443321 100 13445666666
Q ss_pred HHHHHHcCC
Q 045226 250 LKLKEALLK 258 (266)
Q Consensus 250 ~~l~~~L~~ 258 (266)
+.|.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666666544
No 57
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.97 E-value=0.00055 Score=58.44 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=35.1
Q ss_pred CccccchhhHHHHHHHH-hcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHc
Q 045226 154 PAVYGRDTEKARVLDMV-LKNDPCDAANFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+++|.+..++.+.+++ ..+. ... +.|+|+.|+||||||+.+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHH
Confidence 46889998888888887 4332 123 89999999999999998876
No 58
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.97 E-value=0.0015 Score=52.36 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=50.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccC-----CCceEEEEecCCCCHHHHHHHHHHHhcCCC---------CCCCChH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVED-----FKPKAWVCVSDDFDVLRISKAILESITLSS---------CDLKDLN 246 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-----F~~~~wv~vs~~~~~~~i~~~il~~l~~~~---------~~~~~~~ 246 (266)
-.++.|+|+.|+|||||+..+........ -..++|++....++...+ ..+++.++... ....+.+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999876421211 246788887776665544 33444444321 0112333
Q ss_pred HH---HHHHHHHcC-CceEEEEeC
Q 045226 247 SV---QLKLKEALL-KKKFFDCLG 266 (266)
Q Consensus 247 ~~---~~~l~~~L~-~kr~LiVLD 266 (266)
+. ...+.+.+. .+.-+||||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD 126 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVD 126 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCceEEEEe
Confidence 32 233445553 356677776
No 59
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.97 E-value=0.00095 Score=56.48 Aligned_cols=50 Identities=26% Similarity=0.291 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhc----C---CCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLK----N---DPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~---~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+++.. . .. .....+-+-++|++|+|||+||+.+.+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999988887721 0 00 1223457889999999999999999886
No 60
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.96 E-value=0.00042 Score=52.59 Aligned_cols=20 Identities=40% Similarity=0.699 Sum_probs=18.9
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 045226 182 RVIALVGMGGIGKTTLAQEV 201 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v 201 (266)
.+|.|+|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 61
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.96 E-value=0.00069 Score=58.27 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhc----CCC--CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLK----NDP--CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+++.. .+. ........+-|+|+.|+|||+||+.+.+.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999998888887642 110 00112467889999999999999999876
No 62
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.95 E-value=0.00059 Score=52.83 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 479999999999999999999875
No 63
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.94 E-value=0.0025 Score=53.62 Aligned_cols=80 Identities=9% Similarity=0.010 Sum_probs=52.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHH-HHHHHH
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSV-QLKLKE 254 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~-~~~l~~ 254 (266)
.++-|.|+.|+|||||+.++.....-.. =..++||+....++.. .+++++.... ...+.++. ...+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 3789999999999999988765532111 2467899988888764 3667765432 23455555 443333
Q ss_pred H--c-CCceEEEEeC
Q 045226 255 A--L-LKKKFFDCLG 266 (266)
Q Consensus 255 ~--L-~~kr~LiVLD 266 (266)
. + .++.-|||+|
T Consensus 104 l~~i~~~~~~lvVID 118 (333)
T 3io5_A 104 LDAIERGEKVVVFID 118 (333)
T ss_dssp HHTCCTTCCEEEEEE
T ss_pred HHHhhccCceEEEEe
Confidence 3 3 4566788887
No 64
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.93 E-value=0.0022 Score=54.93 Aligned_cols=80 Identities=14% Similarity=0.041 Sum_probs=51.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKLKEA 255 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l~~~ 255 (266)
-.++.|.|.+|+||||||.++...... .=..++|++....++.. .++.++.... ...+.++....+...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 479999999999999999888755211 12467889888877753 2444543211 223566666666655
Q ss_pred cCC-ceEEEEeC
Q 045226 256 LLK-KKFFDCLG 266 (266)
Q Consensus 256 L~~-kr~LiVLD 266 (266)
... +--+||+|
T Consensus 135 ~~~~~~~lIVID 146 (349)
T 2zr9_A 135 VRSGALDIIVID 146 (349)
T ss_dssp HTTTCCSEEEEE
T ss_pred HhcCCCCEEEEc
Confidence 543 44577776
No 65
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.93 E-value=0.0041 Score=53.13 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=40.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccC-----CCceEEEEecCCCCHHHHHHHHHHHhc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVED-----FKPKAWVCVSDDFDVLRISKAILESIT 236 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-----F~~~~wv~vs~~~~~~~i~~~il~~l~ 236 (266)
.-.++.|.|..|+||||||..+........ -..++|++....++...+. .++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 357999999999999999998776522211 2467899988888876654 4455544
No 66
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.91 E-value=0.0037 Score=52.84 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 162 EKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
....+...+.... ......+|+|.|+.|+|||||++.+..-
T Consensus 75 ~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 75 TLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3334444444332 2345789999999999999999998764
No 67
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.89 E-value=0.0013 Score=58.28 Aligned_cols=24 Identities=33% Similarity=0.456 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+.|+|+.|+||||||+.+++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999999986
No 68
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.86 E-value=0.00072 Score=56.44 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=36.5
Q ss_pred CccccchhhHHHHHHHHhcC---CC-C----CCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKN---DP-C----DAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---~~-~----~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|.+..++.+...+... .. . ......-+-++|+.|+|||+||+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999888888777541 00 0 0012345779999999999999999876
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.85 E-value=0.00035 Score=59.55 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=34.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..++|.+..++.+-..+..... .+..+..+.++|+.|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3567877666666555543200 01124678999999999999999998763
No 70
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.85 E-value=0.0014 Score=53.80 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=33.7
Q ss_pred ccccchhhHHHHHH-------HHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 155 AVYGRDTEKARVLD-------MVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 155 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|....++.++. .+.... .....-+-|+|+.|+|||+||+.+.+.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46777666665555 333211 224678889999999999999999986
No 71
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.82 E-value=0.00067 Score=55.61 Aligned_cols=52 Identities=29% Similarity=0.342 Sum_probs=34.2
Q ss_pred CccccchhhHHHHHHHHhc---CCC---CCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLK---NDP---CDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..++.+.+.+.. ... -+.....-+-|+|+.|+|||+||+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4689998777777665431 000 000012236799999999999999998863
No 72
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.82 E-value=0.00074 Score=52.06 Aligned_cols=24 Identities=17% Similarity=0.505 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 369999999999999999999765
No 73
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.82 E-value=0.0024 Score=50.68 Aligned_cols=47 Identities=26% Similarity=0.228 Sum_probs=30.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKA 230 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 230 (266)
-.++.|+|..|+|||||++.+...... .=..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEccc--CHHHHHHH
Confidence 369999999999999999998854211 123455555433 44444433
No 74
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.81 E-value=0.0007 Score=55.49 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=33.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|....+..+.+.+..-.. ...-+-|+|..|+|||+||+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 578998888888877654211 1235679999999999999999986
No 75
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.81 E-value=0.00063 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=0.001 Score=56.63 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=36.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|..++..+. +.-+.++|+.|+||||+|+.+.+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHH
Confidence 357888888888888887654 223889999999999999998875
No 77
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.77 E-value=0.00093 Score=52.37 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..+|.|+|+.|.|||||++.+....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999987653
No 78
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.77 E-value=0.00074 Score=52.89 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+||||+|+.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 79
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.76 E-value=0.00095 Score=52.61 Aligned_cols=25 Identities=40% Similarity=0.389 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|+|+.|.|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998775
No 80
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.75 E-value=0.0016 Score=54.48 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=36.8
Q ss_pred ccccchhhHHHHHHHHhcCC---CCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 155 AVYGRDTEKARVLDMVLKND---PCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|.+..++.+...+.... .........+.++|+.|+|||+||+.+.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 46788888887777775421 001223468999999999999999999876
No 81
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.75 E-value=0.0036 Score=52.88 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=53.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccc------------cC-C--CceEEEEecCCCCHHHHHHHHHHHhcCCC------
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRV------------ED-F--KPKAWVCVSDDFDVLRISKAILESITLSS------ 239 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~------------~~-F--~~~~wv~vs~~~~~~~i~~~il~~l~~~~------ 239 (266)
-.++-|.|.+|+|||+||..+...... .. . ..++|++....++...+. .+++.++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhcC
Confidence 579999999999999999887754211 11 1 467899988888777665 3455554321
Q ss_pred ---CCCCChHH---HHHHHHHHcC--CceEEEEeC
Q 045226 240 ---CDLKDLNS---VQLKLKEALL--KKKFFDCLG 266 (266)
Q Consensus 240 ---~~~~~~~~---~~~~l~~~L~--~kr~LiVLD 266 (266)
....+.++ +...+...+. .+--|||+|
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVID 211 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVID 211 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEE
Confidence 01223332 4445555554 345678877
No 82
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.73 E-value=0.0007 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+.|.|+|+.|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34789999999999999998765
No 83
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.73 E-value=0.00092 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 368999999999999999998764
No 84
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.72 E-value=0.002 Score=53.62 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 162 EKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-+++++..++.... ......+|.|+|+.|+||||||+.+...
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444554444322 2334679999999999999999999765
No 85
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.71 E-value=0.00093 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+|.|+|+.|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 86
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.71 E-value=0.00081 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|+|+.|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998765
No 87
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.70 E-value=0.002 Score=55.10 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=32.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 157 YGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++.+.-.+.+++.|...-. ......|.|+|+.|+||||+++.+...
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4455566777777643221 223567999999999999999987664
No 88
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.69 E-value=0.0014 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|+|+.|.||||||+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999999875
No 89
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.68 E-value=0.00073 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|+|+|+.|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 90
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.67 E-value=0.001 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.712 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
..+++|+|+.|.|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47999999999999999997553
No 91
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.67 E-value=0.0011 Score=52.42 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..+|+|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4699999999999999999998653
No 92
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.66 E-value=0.0016 Score=56.62 Aligned_cols=51 Identities=29% Similarity=0.342 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcC----CC--CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKN----DP--CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+++... .. .......-+-|+|+.|+|||+||+.+.+.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999988887321 00 00112467889999999999999999876
No 93
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.66 E-value=0.0018 Score=52.79 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 160 DTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 160 ~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+...+.++..+..+.. ......+|.|+|++|+||||+|+.+...
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 12 KHALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444555555554432 2345689999999999999999998765
No 94
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.65 E-value=0.0026 Score=53.28 Aligned_cols=24 Identities=46% Similarity=0.439 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+++++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999888754
No 95
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.64 E-value=0.0014 Score=49.92 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|+|+|+.|.|||||++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 579999999999999999998754
No 96
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.64 E-value=0.0011 Score=53.90 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|.|+.|+||||+|+.+...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998764
No 97
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.64 E-value=0.0011 Score=51.90 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|+|+|+.|+|||||++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 479999999999999999999764
No 98
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.63 E-value=0.0012 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999975
No 99
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.62 E-value=0.0011 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987653
No 100
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.62 E-value=0.0011 Score=51.79 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|+|+|+.|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998765
No 101
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.61 E-value=0.0012 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 102
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.61 E-value=0.0065 Score=53.56 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..||.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999887643
No 103
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.61 E-value=0.00087 Score=51.91 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999998754
No 104
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.60 E-value=0.0026 Score=53.50 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|+|++|+||||++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4689999999999999999988765
No 105
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.59 E-value=0.0013 Score=55.26 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=36.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|....+..+.+.+..-.. ...-|-|+|..|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3578999888888888765221 1235669999999999999999985
No 106
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.58 E-value=0.0017 Score=55.76 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcC----C--CCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKN----D--PCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..++.|.+.+... . .......+-|-++|+.|+|||+||+.+.+..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999988888876311 0 0011123457889999999999999999863
No 107
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.57 E-value=0.0017 Score=50.12 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998764
No 108
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.57 E-value=0.00097 Score=52.30 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
..+++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999875
No 109
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.56 E-value=0.0015 Score=54.96 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+++|+|+.|+|||||++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999999998753
No 110
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.55 E-value=0.0017 Score=50.68 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+|+|+|+.|+||||+++.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4679999999999999999998764
No 111
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.55 E-value=0.0016 Score=55.00 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|+|+.|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4689999999999999999998875
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.54 E-value=0.00092 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-..+.|+|+.|+|||||++.+++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998864
No 113
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.54 E-value=0.0012 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|.|+|+.|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999998764
No 114
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.54 E-value=0.00093 Score=52.35 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+||||||+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998765
No 115
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.53 E-value=0.0013 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999875
No 116
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.53 E-value=0.0014 Score=51.38 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 117
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.53 E-value=0.0013 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998654
No 118
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.52 E-value=0.014 Score=51.29 Aligned_cols=25 Identities=40% Similarity=0.343 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999887654
No 119
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.51 E-value=0.0024 Score=54.87 Aligned_cols=50 Identities=28% Similarity=0.260 Sum_probs=35.4
Q ss_pred ccccchhhHHHHHHHHhc-------CC--CCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 155 AVYGRDTEKARVLDMVLK-------ND--PCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------~~--~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|.+..++.+...+.. .. .........+.++|++|+|||++|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 368888888888777721 00 001113457889999999999999999876
No 120
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.50 E-value=0.0017 Score=54.91 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=35.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|.+..++.+...+..+. -+-++|+.|+|||+||+.+.+.
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHHH
Confidence 57899988888888877532 4778999999999999999874
No 121
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.49 E-value=0.0031 Score=50.01 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|.+|+|||||+..+...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999888764
No 122
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.48 E-value=0.0056 Score=53.78 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|+|+|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999888754
No 123
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.48 E-value=0.0022 Score=49.44 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...+|.|+|+.|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999987753
No 124
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.47 E-value=0.0016 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999998653
No 125
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.47 E-value=0.0012 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999998765
No 126
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.47 E-value=0.0016 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999983
No 127
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.46 E-value=0.0016 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|.|+.|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999775
No 128
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.46 E-value=0.0021 Score=57.12 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=35.2
Q ss_pred CccccchhhHHHHH---HHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVL---DMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~---~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..++.+. +++..+. ...+-+-++|++|+|||+||+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKK----MAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 57899998877544 4444332 123557899999999999999998873
No 129
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.44 E-value=0.0021 Score=52.11 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|+|.|+.|.|||||++.+...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999998764
No 130
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.43 E-value=0.0019 Score=50.64 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 131
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.43 E-value=0.0017 Score=49.77 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 467889999999999999998754
No 132
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.42 E-value=0.0022 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|.|.|+.|+||||+|+.+...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998765
No 133
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.42 E-value=0.0035 Score=56.26 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 155 AVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.++|.+..++.+...+..+ .-+-++|++|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 4688888888888877654 357789999999999999999864
No 134
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.42 E-value=0.0018 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57999999999999999998654
No 135
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.42 E-value=0.002 Score=53.77 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
....+-++|++|+|||+||+.+.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999874
No 136
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.0025 Score=50.40 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=30.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 157 YGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-+.++..+.+.+.+... ...+|+|+|.+|+|||||+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 12 AENKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 33445555565555433 2689999999999999999887654
No 137
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.40 E-value=0.002 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 138
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.40 E-value=0.0015 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|+|||||++.+..-
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999998764
No 139
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.39 E-value=0.0018 Score=49.43 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...+++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 36799999999999999999988753
No 140
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.39 E-value=0.0041 Score=52.42 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...+-|+|+.|+||||||+.+++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4578899999999999999999863
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.38 E-value=0.011 Score=51.60 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=37.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcccccc----C-CCceEEEEecCCCCHHHHHHHHHHHhcC
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVE----D-FKPKAWVCVSDDFDVLRISKAILESITL 237 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~----~-F~~~~wv~vs~~~~~~~i~~~il~~l~~ 237 (266)
-.++.|+|..|+|||||+..+.-..... . -..++|++....++...+ +.+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 4699999999999999999764221111 1 235788887777766554 335555553
No 142
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0021 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764
No 143
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.37 E-value=0.0021 Score=50.44 Aligned_cols=24 Identities=17% Similarity=0.594 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|+|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 578999999999999999998865
No 144
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.35 E-value=0.0042 Score=53.70 Aligned_cols=53 Identities=21% Similarity=0.107 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcccccc-C-CCceEEEEecCCC
Q 045226 164 ARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVE-D-FKPKAWVCVSDDF 222 (266)
Q Consensus 164 ~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~-~-F~~~~wv~vs~~~ 222 (266)
-++++.+..-. .-..++|+|..|+|||||++.+.+..... . +.|+ ++-+.+..
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERP 216 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCH
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCCh
Confidence 35667766533 24689999999999999999987753221 2 4433 46677654
No 145
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.34 E-value=0.0019 Score=48.86 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+|.|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999765
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.34 E-value=0.0055 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|+|+.|.|||||++.+..-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998874
No 147
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.34 E-value=0.0027 Score=47.89 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 479999999999999999998764
No 148
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.33 E-value=0.0022 Score=49.47 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998765
No 149
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.31 E-value=0.0023 Score=51.10 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|+.|+|||||.+.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4799999999999999999987653
No 150
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.31 E-value=0.0024 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 151
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.30 E-value=0.0024 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
+.+||+|.|-|||||||.+-.+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 468999999999999999877643
No 152
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.30 E-value=0.0024 Score=52.07 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~ 202 (266)
..+|+|+|+.|.|||||++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999999987
No 153
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.29 E-value=0.0053 Score=52.70 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+++|+|+.|+|||||++.+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999998764
No 154
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.29 E-value=0.012 Score=49.50 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=33.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILE 233 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 233 (266)
-.++-|.|.+|+||||||..+......+ =..++|++.- .+...+...++.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEECC--CCHHHHHHHHHH
Confidence 4689999999999999999887553222 2456666644 445555555544
No 155
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.28 E-value=0.0025 Score=49.00 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.+.|+.|+||||+|+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998754
No 156
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.28 E-value=0.0027 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998764
No 157
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.28 E-value=0.0026 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 158
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.27 E-value=0.0034 Score=48.29 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|.|+.|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.26 E-value=0.0019 Score=49.31 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|+|+.|+||||+|+.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999765
No 160
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.26 E-value=0.026 Score=50.61 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEecCCCcHHHHHHHHHc
Q 045226 163 KARVLDMVLKNDPC---DAANFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 163 ~~~l~~~L~~~~~~---~~~~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.++|.++|.....+ ...+..+|+|+|.+|+|||||+..+..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555555442211 113578999999999999999988874
No 161
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.26 E-value=0.0013 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|+|+|+.|+|||||++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999998654
No 162
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.24 E-value=0.0029 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 163
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.24 E-value=0.0025 Score=49.43 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|.|+.|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998765
No 164
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.22 E-value=0.003 Score=52.98 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+++|+|+.|+|||||++.+...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 579999999999999999998754
No 165
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.21 E-value=0.003 Score=50.16 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=31.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcccccc----C-CCceEEEEecCCCCHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVE----D-FKPKAWVCVSDDFDVL 225 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~----~-F~~~~wv~vs~~~~~~ 225 (266)
-.+++|+|+.|+|||||++.+....... . -...+|+.-...+...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 4799999999999999999997632221 1 2346777765544443
No 166
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.20 E-value=0.0017 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|..|.|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998765
No 167
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.19 E-value=0.0026 Score=49.14 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 168
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.19 E-value=0.0019 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|+|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
No 169
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.19 E-value=0.0024 Score=54.22 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=32.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..+..+...+.... ..-+-|+|+.|+|||+||+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHhC
Confidence 458898876655444443322 1238899999999999999998753
No 170
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.18 E-value=0.0023 Score=49.80 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|+|||||++.+...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999998764
No 171
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.17 E-value=0.0028 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 172
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.16 E-value=0.0067 Score=54.15 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+++|+|..|+|||||++.+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4679999999999999999998764
No 173
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.15 E-value=0.0029 Score=50.92 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~ 202 (266)
-.+++|+|+.|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4699999999999999999887
No 174
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.15 E-value=0.003 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998764
No 175
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.15 E-value=0.0028 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999998754
No 176
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.15 E-value=0.0033 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.14 E-value=0.0079 Score=50.84 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
....+|+|+|.+|+||||++..+...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999887654
No 178
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.14 E-value=0.0037 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHH
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~ 202 (266)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 36799999999999999999987
No 179
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.14 E-value=0.0022 Score=48.60 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998765
No 180
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.12 E-value=0.0031 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999775
No 181
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.12 E-value=0.0031 Score=50.05 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998765
No 182
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.12 E-value=0.0027 Score=51.57 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHccc
Q 045226 184 IALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~~ 205 (266)
+.|+|+.|+||||||+.+.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999763
No 183
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.11 E-value=0.0039 Score=48.65 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+-.+|+|+|+.|+||||+++.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999998765
No 184
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.11 E-value=0.004 Score=52.83 Aligned_cols=25 Identities=40% Similarity=0.436 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+++|+|+.|+|||||++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999998764
No 185
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.10 E-value=0.0044 Score=55.55 Aligned_cols=51 Identities=31% Similarity=0.358 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcC--CC-----CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKN--DP-----CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~--~~-----~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+++... .. -+.....-+-|+|+.|+|||+||+.+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 46899999998888876531 00 00112356889999999999999999876
No 186
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.09 E-value=0.0021 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=17.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998765
No 187
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.09 E-value=0.0034 Score=49.27 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|.|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 188
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.09 E-value=0.02 Score=48.64 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=33.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILE 233 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 233 (266)
-.++.|.|.+|+||||||..+....... =..++|++. ..+...+...++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fSl--Ems~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFSL--EMSAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEES--SSCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeC--CCCHHHHHHHHHH
Confidence 3689999999999999999887653211 124455543 4556666666544
No 189
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.07 E-value=0.003 Score=57.39 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=35.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.++-...+.+.+.-..-.......++.++|+.|+||||||+.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 357888877776655443211000113568999999999999999999876
No 190
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.06 E-value=0.0041 Score=49.06 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999998765
No 191
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.06 E-value=0.0028 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 192
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.05 E-value=0.0022 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=16.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~ 202 (266)
..+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999998
No 193
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.05 E-value=0.0061 Score=52.56 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+-++|+.|+|||+||+.+.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999876
No 194
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0075 Score=52.99 Aligned_cols=51 Identities=31% Similarity=0.311 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHhc----CCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLK----NDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|.+..++.|.+.+.- ++. -+-...+-|-++|++|+|||+||+++.+.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5788999888877765532 100 01223567889999999999999999987
No 195
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.05 E-value=0.003 Score=52.22 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=32.3
Q ss_pred CccccchhhHHHHHHHHhc---CC-----CCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLK---ND-----PCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---~~-----~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|.++.++.|.+.+.. .. -.-...-. +.++|+.|+||||||+.+...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 4577888777777664421 00 00011123 999999999999999999875
No 196
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.04 E-value=0.0034 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|+.|.|||||.+.+..-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998753
No 197
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.04 E-value=0.002 Score=51.53 Aligned_cols=25 Identities=16% Similarity=-0.091 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.++-|.|..|.||||++..+.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4789999999999999997766553
No 198
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.03 E-value=0.0036 Score=48.47 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 199
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.02 E-value=0.0034 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999764
No 200
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.01 E-value=0.0036 Score=49.93 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|.|.|+.|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 201
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.99 E-value=0.0036 Score=51.79 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998753
No 202
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.98 E-value=0.0048 Score=48.81 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 203
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.98 E-value=0.0037 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999764
No 204
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.98 E-value=0.0041 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 205
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.97 E-value=0.0041 Score=50.66 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 206
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0079 Score=46.22 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
....|.|+|.+|+|||||...+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35688999999999999999887653
No 207
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.96 E-value=0.0038 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998754
No 208
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.93 E-value=0.004 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|+.|.|||||.+.+..-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998753
No 209
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.93 E-value=0.016 Score=51.28 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=34.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCC-HHHHHHHHH
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFD-VLRISKAIL 232 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~il 232 (266)
..++|+|..|+|||||++.+........-+.++++-+.+..+ ..++..++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 468999999999999999988764322224567777777653 334444443
No 210
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.93 E-value=0.004 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 368999999999999999998764
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.93 E-value=0.0056 Score=58.32 Aligned_cols=51 Identities=31% Similarity=0.290 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhc----CCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLK----NDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|.+..++.|.+++.. ... -+-.....+.|+|+.|+||||||+.+.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5689999888888887643 100 01123457999999999999999999876
No 212
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.011 Score=52.15 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHhc----CCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLK----NDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|.++.++.|.+.+.- ++. -+-...+=|-++|++|+|||+||+++.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5788998887777665432 110 01223577889999999999999999987
No 213
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.93 E-value=0.0049 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999998754
No 214
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.92 E-value=0.0043 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 215
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.92 E-value=0.004 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999999764
No 216
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.91 E-value=0.0093 Score=51.12 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 163 KARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 163 ~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+.+.+.... ....+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 445555554322 24689999999999999999887543
No 217
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.91 E-value=0.0044 Score=47.55 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+++|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 579999999999999999998865
No 218
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.90 E-value=0.0048 Score=51.61 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=21.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...++|+|+|-||+||||+|-.+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 35789999999999999999876653
No 219
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.90 E-value=0.0042 Score=50.50 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999764
No 220
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.89 E-value=0.0039 Score=51.43 Aligned_cols=51 Identities=27% Similarity=0.304 Sum_probs=32.5
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKND-------PCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..+.++.+....-. -.-..... +.|+|+.|+||||||+.+.+..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHc
Confidence 468888766655544332100 00001122 8999999999999999998863
No 221
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.89 E-value=0.004 Score=49.46 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999765
No 222
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.89 E-value=0.0035 Score=49.84 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||.+.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999765
No 223
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.89 E-value=0.0057 Score=48.67 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+.+||-|.|++|+||||.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999876
No 224
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.89 E-value=0.0049 Score=47.65 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987653
No 225
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.87 E-value=0.0044 Score=50.69 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 369999999999999999999764
No 226
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.87 E-value=0.0061 Score=49.51 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHc
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
....++.++|.||+|||||+..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3468899999999999999999873
No 227
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.86 E-value=0.0044 Score=51.12 Aligned_cols=24 Identities=46% Similarity=0.479 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999764
No 228
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.86 E-value=0.0044 Score=50.75 Aligned_cols=24 Identities=42% Similarity=0.492 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 369999999999999999998764
No 229
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.85 E-value=0.0049 Score=49.34 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|.|+.|.|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998775
No 230
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.85 E-value=0.0047 Score=48.69 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998654
No 231
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.83 E-value=0.012 Score=50.24 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=33.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccccC-C----CceEEEEecCCCCHHH
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRVED-F----KPKAWVCVSDDFDVLR 226 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F----~~~~wv~vs~~~~~~~ 226 (266)
.-.++.|+|+.|+|||||+..+........ . ..++|++....+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 358999999999999999999876532121 2 2448888766554443
No 232
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.82 E-value=0.005 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998764
No 233
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.81 E-value=0.0048 Score=50.24 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998764
No 234
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.81 E-value=0.0064 Score=54.22 Aligned_cols=52 Identities=29% Similarity=0.295 Sum_probs=33.9
Q ss_pred CccccchhhHHHHHHHH---hcCC---CCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMV---LKND---PCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~~~---~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..++++.+.+ .... .-+....+-+.++|+.|+|||+||+.+.+..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899887766665543 2210 0001112347799999999999999999863
No 235
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.81 E-value=0.0048 Score=50.74 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999998764
No 236
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.80 E-value=0.0044 Score=49.14 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999765
No 237
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.80 E-value=0.0052 Score=52.23 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|+|+|+.|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998765
No 238
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.80 E-value=0.0038 Score=50.84 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999763
No 239
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.011 Score=51.92 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHh----cCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVL----KNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|.++.++.|.+.+. .++. -+-...+-|-++|++|+|||.||+++.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 478899988888776532 2110 01234567889999999999999999987
No 240
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.78 E-value=0.0049 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999764
No 241
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.78 E-value=0.005 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999865
No 242
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.77 E-value=0.0053 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998654
No 243
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.77 E-value=0.007 Score=45.47 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998764
No 244
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.77 E-value=0.0049 Score=47.25 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998763
No 245
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0078 Score=52.36 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHh----cCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVL----KNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|.++.+++|.+.+. .++. -+-...+-+-++|++|+|||.||+++.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 468899888777766543 1110 01123466789999999999999999987
No 246
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.75 E-value=0.0066 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|.|+.|+||||+|+.+...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999998754
No 247
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.72 E-value=0.0054 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998765
No 248
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.72 E-value=0.057 Score=45.20 Aligned_cols=71 Identities=7% Similarity=-0.017 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc-cccC-CCceEEEEecC-CCCHHHHHHHHHHHhc
Q 045226 160 DTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK-RVED-FKPKAWVCVSD-DFDVLRISKAILESIT 236 (266)
Q Consensus 160 ~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~-~~~~-F~~~~wv~vs~-~~~~~~i~~~il~~l~ 236 (266)
++.++.|.+.+..+. ....-++|+.|+||||+|..+.+.. .... +....+++.+. ...... .+++++.+.
T Consensus 3 ~~~~~~L~~~i~~~~------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~ 75 (305)
T 2gno_A 3 KDQLETLKRIIEKSE------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLN 75 (305)
T ss_dssp -CHHHHHHHHHHTCS------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHCCC------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHh
Confidence 445566666665432 5788899999999999999987641 1112 33345566543 344433 455676664
Q ss_pred C
Q 045226 237 L 237 (266)
Q Consensus 237 ~ 237 (266)
.
T Consensus 76 ~ 76 (305)
T 2gno_A 76 Y 76 (305)
T ss_dssp S
T ss_pred h
Confidence 3
No 249
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.71 E-value=0.0073 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
-.+++|+|+.|.|||||++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 47999999999999999998765
No 250
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.70 E-value=0.01 Score=49.83 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 161 TEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 161 ~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.....+.+++..... .....+-|+|+.|+|||+||..+++..
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344455666654321 113578899999999999999999864
No 251
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.70 E-value=0.0059 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|+|.|+.|.||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 252
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.69 E-value=0.0061 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 47999999999999999999864
No 253
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.68 E-value=0.0061 Score=50.23 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998753
No 254
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.67 E-value=0.0076 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.-|.|+|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998765
No 255
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.67 E-value=0.0086 Score=52.78 Aligned_cols=25 Identities=44% Similarity=0.521 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999887664
No 256
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.67 E-value=0.0081 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..+|.|+|+.|+||||||..+....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4699999999999999999998763
No 257
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.64 E-value=0.0066 Score=44.96 Aligned_cols=22 Identities=32% Similarity=0.741 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998765
No 258
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.59 E-value=0.0095 Score=54.84 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=34.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|.+..++.+...+..+ ..+.|+|+.|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46789887777776666543 47899999999999999999875
No 259
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.59 E-value=0.016 Score=54.78 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|.+..++.+...+..... ........+-++|+.|+|||+||+.+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4688999988888887764221 01223457999999999999999999876
No 260
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.58 E-value=0.008 Score=50.19 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+++|+|.+|+||||++..+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999998765
No 261
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.57 E-value=0.0081 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|+++|..|+|||||...+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999874
No 262
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.57 E-value=0.0037 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=18.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|+|.|+.|+||||+|+.+...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 263
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.57 E-value=0.0083 Score=50.39 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999998765
No 264
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.015 Score=51.38 Aligned_cols=51 Identities=25% Similarity=0.242 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHHh----cCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVL----KNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|.++.++.|.+.+. ..+. -+-...+-|-++|++|+|||+||+++.+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 468899888887776542 1100 01123567889999999999999999986
No 265
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.54 E-value=0.0069 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||.+.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 266
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.53 E-value=0.079 Score=46.96 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=44.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCC-HHHHHHHHHHH
Q 045226 165 RVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFD-VLRISKAILES 234 (266)
Q Consensus 165 ~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~il~~ 234 (266)
++++.|..-. .-.-++|.|..|+|||+|++.+.+......-+.++++-+.+..+ ..++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4677776532 24689999999999999998887752111135677888887654 45566666654
No 267
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.52 E-value=0.011 Score=46.41 Aligned_cols=37 Identities=8% Similarity=0.123 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 163 KARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 163 ~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+..+..++..- ++-..+.|+|++|+||||+|..+.+.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55566666432 12346999999999999998887765
No 268
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.52 E-value=0.072 Score=45.04 Aligned_cols=40 Identities=8% Similarity=0.186 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 160 DTEKARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 160 ~~~~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+...+.+.+.+..+. -...+-++|+.|+|||++|+.+.+.
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHH
Confidence 445566677666544 2467899999999999999988764
No 269
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.52 E-value=0.0078 Score=47.46 Aligned_cols=22 Identities=36% Similarity=0.339 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 270
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.51 E-value=0.0076 Score=44.91 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 271
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.49 E-value=0.0077 Score=47.93 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998765
No 272
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.48 E-value=0.0082 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998875
No 273
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.46 E-value=0.0061 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 468999999999999999998753
No 274
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.46 E-value=0.0079 Score=46.07 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
--|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999987653
No 275
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.45 E-value=0.0086 Score=49.85 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|+.|.|||||.+.+..-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999998753
No 276
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.43 E-value=0.041 Score=48.75 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=32.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAIL 232 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 232 (266)
-.++.|.|.+|+||||||..+........=..++|++... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHH
Confidence 4699999999999999999987763221112566666433 3444444443
No 277
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.43 E-value=0.0088 Score=49.71 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=26.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCC-ceEEEEe
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFK-PKAWVCV 218 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~-~~~wv~v 218 (266)
-.+++|+|..|+|||||++.+....... -. .++|+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 4699999999999999999987763221 23 4555543
No 278
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.41 E-value=0.0092 Score=47.77 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|.|.|+.|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999765
No 279
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.41 E-value=0.0091 Score=49.23 Aligned_cols=24 Identities=42% Similarity=0.433 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.++.|+|.+|+|||||+..+...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 369999999999999999988754
No 280
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.40 E-value=0.0089 Score=49.70 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999863
No 281
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.37 E-value=0.0097 Score=47.75 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHc
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998875
No 282
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.34 E-value=0.0093 Score=44.28 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-|.|+|..|+|||||...+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998754
No 283
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.33 E-value=0.011 Score=47.46 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...|.|.|+.|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998763
No 284
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.33 E-value=0.0091 Score=44.47 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5789999999999999998653
No 285
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.32 E-value=0.014 Score=43.80 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.--|.|+|.+|+|||||...+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4578999999999999999987653
No 286
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.32 E-value=0.023 Score=45.72 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=27.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEE
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVC 217 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~ 217 (266)
...|.|.|+.|+||||+++.+........+.......
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 4689999999999999999998874332255444443
No 287
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.32 E-value=0.015 Score=52.11 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=33.5
Q ss_pred CccccchhhHHHHHHH---HhcCCC--C-CCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDM---VLKNDP--C-DAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~---L~~~~~--~-~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|.+..+.++.+. +..... . +-.-.+-+.|+|+.|+||||||+.+.+..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689988766555544 332110 0 00111238999999999999999998763
No 288
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.01 Score=44.29 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 289
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.31 E-value=0.01 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 368999999999999999999764
No 290
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.31 E-value=0.0097 Score=52.17 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|.|+|+.|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999998765
No 291
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.30 E-value=0.013 Score=49.20 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.|+|+.|+||||||..+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 578999999999999999998765
No 292
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.30 E-value=0.0097 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.214 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+++|+|+.|.|||||++.+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999864
No 293
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.29 E-value=0.01 Score=44.20 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998764
No 294
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.28 E-value=0.01 Score=50.02 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+.+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999865
No 295
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.28 E-value=0.011 Score=44.19 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
--|.|+|..|+|||||...+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999853
No 296
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.28 E-value=0.011 Score=45.07 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+.+|+|..|.|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999853
No 297
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.28 E-value=0.01 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 468999999999999999998764
No 298
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.27 E-value=0.01 Score=45.26 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 299
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.25 E-value=0.011 Score=48.15 Aligned_cols=23 Identities=43% Similarity=0.731 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++|+|.|-||+||||+|..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 68888999999999999887654
No 300
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.25 E-value=0.014 Score=44.13 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999865
No 301
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.24 E-value=0.01 Score=44.28 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999988754
No 302
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.24 E-value=0.013 Score=51.63 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=35.6
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMVLKN--------DPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..++|.+..++.|...+... ........+-|-++|++|+||||||+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 35789888877776665321 00001123558899999999999999998763
No 303
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.23 E-value=0.01 Score=45.50 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999887653
No 304
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.23 E-value=0.013 Score=46.88 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..+|.|.|+.|+||||+++.+....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998864
No 305
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.22 E-value=0.011 Score=44.09 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-|.|+|..|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999998887543
No 306
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.21 E-value=0.011 Score=44.12 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
--|.|+|..|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999887653
No 307
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.20 E-value=0.014 Score=43.89 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
....|.|+|..|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999998653
No 308
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.20 E-value=0.027 Score=53.39 Aligned_cols=52 Identities=29% Similarity=0.305 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHH----hcCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 154 PAVYGRDTEKARVLDMV----LKNDP---CDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L----~~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.++.|.++.+++|.+++ ..++. -+-...+-|-++|++|+|||+||+.+.+..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46788887777766654 22210 012345678899999999999999999873
No 309
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.19 E-value=0.013 Score=48.50 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|+|.|-||+||||+|..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 478999999999999999887654
No 310
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.19 E-value=0.012 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998765
No 311
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.19 E-value=0.011 Score=44.52 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999998765
No 312
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.19 E-value=0.015 Score=44.63 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...|.|+|..|+|||||...+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999987653
No 313
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.19 E-value=0.011 Score=43.79 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999887754
No 314
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.18 E-value=0.021 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHccc
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+.|.|.+|+||||++..+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999887763
No 315
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.18 E-value=0.011 Score=44.62 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...-|.|+|..|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999888654
No 316
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.15 E-value=0.011 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999776554
No 317
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.15 E-value=0.012 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999764
No 318
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.14 E-value=0.01 Score=49.65 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=19.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+. |+|+|..|+|||||.+.++..
T Consensus 19 ~~-I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FT-LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EE-EEEEEETTSSHHHHHHHHHC-
T ss_pred EE-EEEECCCCCCHHHHHHHHhCC
Confidence 44 499999999999999998753
No 319
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.14 E-value=0.01 Score=46.14 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.-|+|+|.+|+|||||...+.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998753
No 320
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.14 E-value=0.03 Score=44.31 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=32.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHH
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILE 233 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 233 (266)
..|.|.|+.|+||||+++.+........+..+++..-......-+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5899999999999999999988743222533333333232233445555554
No 321
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.13 E-value=0.011 Score=44.65 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..--|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999998765
No 322
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.13 E-value=0.016 Score=44.26 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...|.|+|..|+|||||...+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4578999999999999999988763
No 323
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.13 E-value=0.07 Score=47.09 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=34.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILE 233 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 233 (266)
-.++.|.|.+|+||||||..+........=..++|++.. .+...+...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHHH
Confidence 468999999999999999988766322111256666553 455566655553
No 324
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.12 E-value=0.012 Score=43.80 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999988754
No 325
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.12 E-value=0.0088 Score=46.68 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...|+|+|..|+|||||.+.+....
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999887653
No 326
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.10 E-value=0.012 Score=44.30 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998754
No 327
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.10 E-value=0.027 Score=43.98 Aligned_cols=79 Identities=18% Similarity=0.074 Sum_probs=41.4
Q ss_pred EEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHHHcC
Q 045226 183 VIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKLKEALL 257 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l~~~L~ 257 (266)
.|+|=|.-|+||||.++.+++..+..... +++..-+......+.++.++..-..... -..+..+....+...|.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~-v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~ 80 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKK-VILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS 80 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999998874322122 3333333333334444444432211100 00122345566777776
Q ss_pred CceEE
Q 045226 258 KKKFF 262 (266)
Q Consensus 258 ~kr~L 262 (266)
....+
T Consensus 81 ~g~~V 85 (197)
T 3hjn_A 81 EGYAV 85 (197)
T ss_dssp TTCEE
T ss_pred CCCeE
Confidence 55443
No 328
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.09 E-value=0.013 Score=45.21 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999987764
No 329
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.09 E-value=0.017 Score=44.09 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-|.|+|.+|+|||||...+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 567899999999999999998765
No 330
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.08 E-value=0.013 Score=44.12 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999988754
No 331
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.08 E-value=0.011 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+|.|.|++|+||+|+|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999876
No 332
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.07 E-value=0.013 Score=43.68 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
--|.|+|..|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 333
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.06 E-value=0.013 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 368999999999999999999764
No 334
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.06 E-value=0.013 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...++|+|..|.|||||++.+..-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988654
No 335
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.05 E-value=0.015 Score=45.68 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
....|.|+|.+|+|||||...+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678999999999999999987653
No 336
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.05 E-value=0.013 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 457889999999999999887654
No 337
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.04 E-value=0.013 Score=45.09 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988763
No 338
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.04 E-value=0.013 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 368999999999999999999764
No 339
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.03 E-value=0.013 Score=43.57 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
|.|+|..|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998653
No 340
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.03 Score=49.01 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHHh----cCCC---CCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVL----KNDP---CDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++.|.++.+++|.+.+. ..+. -+-...+=|-++|++|+|||.||+++.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 467889887777766542 2110 01223567889999999999999999987
No 341
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.03 E-value=0.013 Score=50.62 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 368999999999999999999764
No 342
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.02 E-value=0.013 Score=44.05 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..-|.|+|..|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 5678999999999999999987653
No 343
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.02 E-value=0.014 Score=44.44 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999988754
No 344
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.01 E-value=0.013 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
--|.|+|..|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999987653
No 345
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.00 E-value=0.015 Score=48.70 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.6
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 178 AANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 178 ~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++...|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345789999999999999999998765
No 346
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.00 E-value=0.013 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||.+.+..-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 68999999999999999999764
No 347
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.98 E-value=0.01 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|.|.|+.|+||||+|+.+...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999999998876
No 348
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.97 E-value=0.028 Score=49.25 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999998654
No 349
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.96 E-value=0.035 Score=52.40 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHhcCC---CCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 154 PAVYGRDTEKARVLDMVLKND---PCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|.+..++.+...+.... .+.+.....+-++|+.|+|||+||+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 357888888887777665311 001223568999999999999999999875
No 350
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.96 E-value=0.015 Score=43.81 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
--|.|+|..|+|||||...+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998754
No 351
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.96 E-value=0.017 Score=49.40 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999999875
No 352
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.96 E-value=0.014 Score=43.58 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-|.|+|..|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998654
No 353
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.96 E-value=0.014 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 368999999999999999998753
No 354
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.95 E-value=0.018 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
..+++|+|+.|+|||||.+.+..
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999863
No 355
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.93 E-value=0.033 Score=44.40 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=33.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccccc-cCCCceEEEEecCCCCHHHHHHHHHH
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDKRV-EDFKPKAWVCVSDDFDVLRISKAILE 233 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~~~-~~F~~~~wv~vs~~~~~~~i~~~il~ 233 (266)
....|.|.|+.|+||||+++.+...... ..+.+.....-......-+.+++++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 3579999999999999999999876443 22444331222222223344555554
No 356
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.93 E-value=0.04 Score=45.51 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 163 KARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 163 ~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+.+.+.|............-|+|+|..|+|||||...+....
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3455555544221112346689999999999999999998654
No 357
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.93 E-value=0.022 Score=43.12 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-|.|+|..|+|||||...+.+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 468899999999999999998743
No 358
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.93 E-value=0.011 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 368999999999999999999864
No 359
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.92 E-value=0.011 Score=44.60 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.++|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999988754
No 360
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.91 E-value=0.04 Score=43.57 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKP 212 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~ 212 (266)
...|.|.|+.|+||||+++.+........+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 46899999999999999999987643222544
No 361
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.91 E-value=0.012 Score=45.56 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHH
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~ 202 (266)
..--|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999984
No 362
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.039 Score=42.07 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998854
No 363
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.90 E-value=0.015 Score=46.43 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=26.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecC
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSD 220 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~ 220 (266)
-.++.|.|.+|+||||||..+..... ..=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccC
Confidence 46999999999999999887754421 1123556665443
No 364
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.89 E-value=0.016 Score=43.94 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-|.|+|..|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999988744
No 365
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.89 E-value=0.015 Score=44.38 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 366
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.88 E-value=0.015 Score=44.09 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999888754
No 367
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.88 E-value=0.018 Score=49.02 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
+..+|+|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999999864
No 368
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.88 E-value=0.015 Score=44.69 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988764
No 369
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.88 E-value=0.015 Score=43.95 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
--|.|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999988754
No 370
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.87 E-value=0.015 Score=44.06 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 457889999999999999998754
No 371
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.87 E-value=0.015 Score=43.89 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999988764
No 372
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.87 E-value=0.031 Score=48.82 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
..+++|+|..|+|||||.+.+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 46999999999999999999987
No 373
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.86 E-value=0.018 Score=44.29 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...-|.|+|..|+|||||...+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999987653
No 374
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.86 E-value=0.018 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|+|+.|+||||||..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 68999999999999999988754
No 375
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.86 E-value=0.015 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|..|+|||||.+.+.+..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999999873
No 376
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.83 E-value=0.015 Score=44.93 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-|.|+|..|+|||||...+.+.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999988654
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.83 E-value=0.024 Score=42.92 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998865
No 378
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.83 E-value=0.016 Score=44.75 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999988765
No 379
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.83 E-value=0.016 Score=44.53 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.--|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999987643
No 380
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.82 E-value=0.01 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999754
No 381
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.82 E-value=0.016 Score=45.29 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998764
No 382
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.82 E-value=0.028 Score=48.14 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+++|+|+.|.|||||.+.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5999999999999999998754
No 383
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.81 E-value=0.019 Score=48.00 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999998765
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.81 E-value=0.018 Score=49.70 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
-.+++|+|+.|.|||||++.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999998865
No 385
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.81 E-value=0.016 Score=44.97 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..--|.|+|..|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567999999999999999988764
No 386
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.80 E-value=0.017 Score=44.69 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.--|.|+|..|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999987653
No 387
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.79 E-value=0.014 Score=50.15 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999998764
No 388
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.77 E-value=0.063 Score=55.59 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=54.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKLKEA 255 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l~~~ 255 (266)
-+++-|.|.+|+||||||.++....... =..++|++....++... ++.++.... ...+.+++.+.++..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~l 456 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence 4799999999999999999987663211 34678888888777542 455554321 234667777766655
Q ss_pred c-CCceEEEEeC
Q 045226 256 L-LKKKFFDCLG 266 (266)
Q Consensus 256 L-~~kr~LiVLD 266 (266)
. ..+--|||+|
T Consensus 457 v~~~~~~lIVID 468 (2050)
T 3cmu_A 457 ARSGAVDVIVVD 468 (2050)
T ss_dssp HHHTCCSEEEES
T ss_pred HHhcCCcEEEEC
Confidence 4 2345678887
No 389
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.77 E-value=0.094 Score=46.65 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=44.7
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccC-CCceEEEEecCCCC-HHHHHHHHHHH
Q 045226 166 VLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVED-FKPKAWVCVSDDFD-VLRISKAILES 234 (266)
Q Consensus 166 l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~-F~~~~wv~vs~~~~-~~~i~~~il~~ 234 (266)
+++.|..-. +-.-++|.|..|+|||+|++.+.+... +. -+.++++-+.+..+ ..++.+++.+.
T Consensus 155 vID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred Eeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 566665533 246799999999999999988877521 22 57888888888764 45566666653
No 390
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.77 E-value=0.017 Score=44.75 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..-|.|+|..|+|||||...+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4678999999999999999987653
No 391
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.76 E-value=0.028 Score=53.90 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=37.0
Q ss_pred ccccchhhHHHHHHHHhcCC---CCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 155 AVYGRDTEKARVLDMVLKND---PCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.++|.+..++.+...+.... .+.+.....+-|+|+.|+|||+||+.+.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 47899888888877765421 001223568899999999999999999875
No 392
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.75 E-value=0.018 Score=50.04 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 36899999999999999999875
No 393
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.75 E-value=0.017 Score=43.56 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.--|.|+|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999987543
No 394
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.75 E-value=0.017 Score=44.99 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999987654
No 395
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.71 E-value=0.017 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998765
No 396
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.71 E-value=0.023 Score=46.52 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998765
No 397
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.71 E-value=0.019 Score=44.57 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457889999999999999998754
No 398
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.70 E-value=0.017 Score=45.12 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998764
No 399
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.70 E-value=0.024 Score=44.96 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
....|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999998765
No 400
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.69 E-value=0.018 Score=44.44 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988754
No 401
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.69 E-value=0.018 Score=44.17 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.--|.|+|..|+|||||...+.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999987653
No 402
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.67 E-value=0.018 Score=43.85 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..-|.|+|..|+|||||...+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999987654
No 403
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.66 E-value=0.018 Score=44.05 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999998754
No 404
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.66 E-value=0.018 Score=44.22 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.--|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578899999999999999987653
No 405
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.66 E-value=0.019 Score=44.37 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=19.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999988763
No 406
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.65 E-value=0.018 Score=44.00 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.--|.|+|..|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4679999999999999999987653
No 407
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.65 E-value=0.018 Score=44.44 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999998653
No 408
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.65 E-value=0.028 Score=43.16 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 457899999999999999998764
No 409
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.65 E-value=0.021 Score=44.61 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..|.|+|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999998765
No 410
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.64 E-value=0.02 Score=45.00 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999998764
No 411
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.61 E-value=0.019 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 456899999999999999998764
No 412
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.59 E-value=0.019 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988754
No 413
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.58 E-value=0.056 Score=55.17 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=53.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKLKEA 255 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l~~~ 255 (266)
-+++-|.|.+|+||||||.++...... .=..++|++....++.. .++.++.... ...+.+++.+.+...
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~-~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Confidence 579999999999999999888765221 13578899888887764 2455554321 234566666666655
Q ss_pred cC-CceEEEEeC
Q 045226 256 LL-KKKFFDCLG 266 (266)
Q Consensus 256 L~-~kr~LiVLD 266 (266)
.. .+--+||+|
T Consensus 457 v~~~~~~lVVID 468 (1706)
T 3cmw_A 457 ARSGAVDVIVVD 468 (1706)
T ss_dssp HHHTCCSEEEES
T ss_pred HHhcCCCEEEEC
Confidence 42 345578887
No 414
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.57 E-value=0.026 Score=45.19 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 35689999999999999999988753
No 415
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.55 E-value=0.12 Score=46.19 Aligned_cols=51 Identities=12% Similarity=0.058 Sum_probs=33.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILE 233 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 233 (266)
-.++-|.|.+|+||||||..+..+...+.=..++|++... +...+...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHHH
Confidence 4689999999999999998887663222112566666533 45556555543
No 416
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.55 E-value=0.02 Score=43.78 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
--|.|+|..|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998765
No 417
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.55 E-value=0.02 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 568999999999999999998754
No 418
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.55 E-value=0.021 Score=44.38 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998754
No 419
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.54 E-value=0.021 Score=43.41 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998754
No 420
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.54 E-value=0.018 Score=50.57 Aligned_cols=21 Identities=43% Similarity=0.733 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 045226 184 IALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 184 i~IvG~gGvGKTtLA~~v~~~ 204 (266)
++|+|..|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999764
No 421
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.52 E-value=0.018 Score=44.27 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.--|.|+|..|+|||||...+.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999987643
No 422
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.52 E-value=0.043 Score=44.91 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 164 ARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 164 ~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.-+..||.... ++-.-|-++|++|+|||.||..+.+.
T Consensus 91 ~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34666665431 23457999999999999999998863
No 423
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.52 E-value=0.017 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|.|||||++.+..-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 424
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.52 E-value=0.021 Score=43.70 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999998754
No 425
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.48 E-value=0.022 Score=44.40 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.-|.|+|..|+|||||...+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999988764
No 426
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.48 E-value=0.018 Score=45.42 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|+|+|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988654
No 427
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.022 Score=43.68 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998765
No 428
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.47 E-value=0.056 Score=47.62 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=34.1
Q ss_pred ccchhhHHHHHHHHhcCCCC--C---CCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 157 YGRDTEKARVLDMVLKNDPC--D---AANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~--~---~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.|.++-.+.|.+.+...... . ......|+|+|.+|+|||||.+.+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 45566677777766532210 1 2345689999999999999999997653
No 429
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.45 E-value=0.022 Score=48.74 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDKR 206 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~~ 206 (266)
.+++|+|+.|+|||||.+.+.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 5899999999999999999987543
No 430
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.43 E-value=0.028 Score=47.01 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999998765
No 431
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.42 E-value=0.085 Score=54.65 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=52.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccccccCCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHHH
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDKRVEDFKPKAWVCVSDDFDVLRISKAILESITLSSC-----DLKDLNSVQLKLKEA 255 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~-----~~~~~~~~~~~l~~~ 255 (266)
.+++-|+|++|+|||+||.++..... ..=..++|+++...++... ++.++.... ...+.++..+.++..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Confidence 57999999999999999988876521 1123667888888887655 444442211 223445566666655
Q ss_pred cC-CceEEEEeC
Q 045226 256 LL-KKKFFDCLG 266 (266)
Q Consensus 256 L~-~kr~LiVLD 266 (266)
.+ .+--+||+|
T Consensus 1501 vr~~~~~lVVID 1512 (2050)
T 3cmu_A 1501 ARSGAVDVIVVD 1512 (2050)
T ss_dssp HHHTCCSEEEES
T ss_pred HhcCCCCEEEEc
Confidence 43 456688887
No 432
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.42 E-value=0.023 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 567999999999999999988754
No 433
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.42 E-value=0.019 Score=44.02 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.--|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999987654
No 434
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.018 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 368999999999999999998764
No 435
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.37 E-value=0.024 Score=44.23 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999888754
No 436
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.36 E-value=0.02 Score=52.04 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+|.|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 479999999999999999999875
No 437
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.35 E-value=0.025 Score=43.88 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.-|.|+|..|+|||||...+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 438
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.34 E-value=0.024 Score=44.69 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999998864
No 439
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.34 E-value=0.025 Score=47.29 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 163 KARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 163 ~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
+++|.+.+. -.+++++|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---------GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 556666653 2589999999999999999998 53
No 440
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.33 E-value=0.024 Score=44.14 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..-|.|+|..|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999988754
No 441
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.30 E-value=0.031 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 579999999999999999998864
No 442
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.30 E-value=0.031 Score=44.72 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=20.0
Q ss_pred CcEEEEEEec-CCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGM-GGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~-gGvGKTtLA~~v~~~ 204 (266)
..++|+|++. ||+||||+|-.+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~ 28 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFA 28 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHH
Confidence 3589999865 899999999887543
No 443
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.29 E-value=0.061 Score=47.92 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHH-HHHHccccccCCC-ceEEEEecCCCC-HHHHHHHHHH
Q 045226 165 RVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLA-QEVYNDKRVEDFK-PKAWVCVSDDFD-VLRISKAILE 233 (266)
Q Consensus 165 ~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA-~~v~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~il~ 233 (266)
+.++.|..-. .-.-++|.|..|+|||+|| ..+.+.. .-+ .++++-+.+..+ ..++.+++..
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~---~~dv~~V~~~iGeR~~Ev~~~~~~~~~ 214 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK---GQDVICIYVAIGQKQSTVAGVVETLRQ 214 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG---SCSEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh---cCCcEEEEEECCCcchHHHHHHHHHhh
Confidence 3566665533 2457899999999999995 6888863 244 346777777654 3445555554
No 444
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.28 E-value=0.024 Score=51.38 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|+|+.|.|||||++.++.-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999764
No 445
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.24 E-value=0.024 Score=45.20 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.|-+.|.||+||||+|..+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 347788999999999988877653
No 446
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.23 E-value=0.025 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|+|..|+|||||++.+.+..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4699999999999999999998863
No 447
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.22 E-value=0.027 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.21 E-value=0.024 Score=51.43 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|+|+.|+|||||++.++.-.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998753
No 449
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.21 E-value=0.026 Score=44.35 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|.+|+|||||...+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999988754
No 450
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.21 E-value=0.019 Score=52.76 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-+-++|++|+|||+||+.+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4788999999999999999876
No 451
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.20 E-value=0.015 Score=44.14 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=10.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999887654
No 452
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.19 E-value=0.023 Score=49.79 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=20.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+. |+|+|..|+|||||.+.+...
T Consensus 32 f~-I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 32 FT-LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EE-EEEECCTTSSHHHHHHHHTTC
T ss_pred EE-EEEECCCCCcHHHHHHHHhCC
Confidence 44 499999999999999998764
No 453
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.18 E-value=0.037 Score=44.85 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...|+|+|..|+|||||...+....
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 5679999999999999999987543
No 454
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.18 E-value=0.073 Score=43.30 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
+...|+|+|..|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999988654
No 455
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.15 E-value=0.09 Score=46.91 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHH-HHHHccccccCCC-ceEEEEecCCCC-HHHHHHHHHH
Q 045226 165 RVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLA-QEVYNDKRVEDFK-PKAWVCVSDDFD-VLRISKAILE 233 (266)
Q Consensus 165 ~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA-~~v~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~il~ 233 (266)
+.++.|..-. .-.-++|.|..|+|||+|| ..+.+.. .-+ .++++-+.+..+ ..++.+++..
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~---~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK---GQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT---TTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh---cCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 4566665422 1357899999999999995 6888863 245 356777777654 3445555554
No 456
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.15 E-value=0.022 Score=44.81 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...|+|+|..|+|||||...+.+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999998764
No 457
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.13 E-value=0.036 Score=43.13 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 357889999999999999887754
No 458
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.12 E-value=0.028 Score=44.55 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|.|+|.+|||||+|.....++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999886543
No 459
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.10 E-value=0.028 Score=50.07 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999999864
No 460
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.09 E-value=0.028 Score=50.99 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999864
No 461
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.09 E-value=0.068 Score=44.52 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 179 ANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 179 ~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
..+..|+|+|..|+|||||...+....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 357789999999999999999987653
No 462
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.08 E-value=0.043 Score=42.93 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|+|+|+.|+||+|.|..+-+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH
Confidence 3579999999999999999887653
No 463
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.08 E-value=0.023 Score=43.45 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999998543
No 464
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.08 E-value=0.038 Score=41.02 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.2
Q ss_pred EEEEEEecCCCcHHHHHHHHH
Q 045226 182 RVIALVGMGGIGKTTLAQEVY 202 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~ 202 (266)
.+..|+|+.|.|||||..+++
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 688999999999999998875
No 465
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.07 E-value=0.029 Score=45.67 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=20.8
Q ss_pred CcEEEEEE-ecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALV-GMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~Iv-G~gGvGKTtLA~~v~~~~ 205 (266)
..++|+|+ +-||+||||+|-.+....
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~l 52 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLL 52 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHH
Confidence 36899997 469999999998876554
No 466
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.05 E-value=0.079 Score=43.26 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...|.++|..|+|||||...+.+..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999999999999988654
No 467
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.03 E-value=0.029 Score=43.55 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=19.0
Q ss_pred EEEEEE-ecCCCcHHHHHHHHHcc
Q 045226 182 RVIALV-GMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~Iv-G~gGvGKTtLA~~v~~~ 204 (266)
++|+|+ +-||+||||+|..+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~ 25 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA 25 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH
Confidence 688898 56999999999887654
No 468
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.99 E-value=0.046 Score=48.17 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=41.4
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHccccccCCC----ceEEEEecCCCC-HHHHHHHHHH
Q 045226 165 RVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVEDFK----PKAWVCVSDDFD-VLRISKAILE 233 (266)
Q Consensus 165 ~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~~F~----~~~wv~vs~~~~-~~~i~~~il~ 233 (266)
+.++.|..-. .-.-++|.|..|+|||+|+..+.+..... -+ .++++-+.+..+ ..++.+++.+
T Consensus 140 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~-~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 140 SAIDHLNTLV-----RGQKLPVFSGSGLPHKELAAQIARQATVL-DSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCS-SCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eEEecccccc-----cCCEEEEeCCCCcChHHHHHHHHHHHHhc-cCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 3566665532 13457899999999999999998875441 12 566777776543 4455555544
No 469
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.98 E-value=0.03 Score=44.86 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-..++|.|+.|+||||+|+.+...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998765
No 470
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.95 E-value=0.024 Score=45.43 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.|+|.|-||+||||+|..+...
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~ 23 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKI 23 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHH
Confidence 3677999999999999887654
No 471
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.95 E-value=0.03 Score=51.46 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|+|+.|.|||||++.+..-.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998753
No 472
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.93 E-value=0.035 Score=43.42 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+|.|.|+.|+||||+|+.+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 59999999999999999998775
No 473
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.93 E-value=0.034 Score=47.83 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
++.+|+|+|..|+|||||.+.+....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46789999999999999999988754
No 474
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.90 E-value=0.042 Score=47.31 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCCcEEEEEEe-cCCCcHHHHHHHHHcc
Q 045226 178 AANFRVIALVG-MGGIGKTTLAQEVYND 204 (266)
Q Consensus 178 ~~~~~vi~IvG-~gGvGKTtLA~~v~~~ 204 (266)
..+.++|+|+| -||+||||+|-.+...
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 45679999996 8999999999887654
No 475
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.89 E-value=0.037 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.++|+.|.||||+|+.+...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998654
No 476
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.87 E-value=0.033 Score=46.46 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 163 KARVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 163 ~~~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
++++..++. -.+++|+|+.|+|||||.+.+...
T Consensus 160 v~~lf~~l~---------geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK---------GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS---------SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc---------CCeEEEECCCCCcHHHHHHHhccc
Confidence 566666663 258999999999999999999764
No 477
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.86 E-value=0.031 Score=45.87 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
--|+|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999987653
No 478
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.84 E-value=0.017 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.+++|+|+.|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999998754
No 479
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.83 E-value=0.035 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.516 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.--|+++|..|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999999999987653
No 480
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.83 E-value=0.039 Score=44.94 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998765
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.033 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.+++|+|+.|.|||||++.+..-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 579999999999999999998653
No 482
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.79 E-value=0.035 Score=50.84 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 468999999999999999998754
No 483
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.74 E-value=0.039 Score=42.51 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=18.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYN 203 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~ 203 (266)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999955443
No 484
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.036 Score=51.01 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|+|||||.+.+..-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 469999999999999999998764
No 485
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.037 Score=43.66 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988754
No 486
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.60 E-value=0.038 Score=50.58 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998754
No 487
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.58 E-value=0.051 Score=44.68 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999874
No 488
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.55 E-value=0.032 Score=47.89 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 045226 183 VIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-|+|+|..|+|||||...++..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4699999999999999998754
No 489
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.52 E-value=0.037 Score=50.88 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
-.+++|+|+.|.|||||.+.+..-
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 469999999999999999998764
No 490
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.51 E-value=0.06 Score=48.45 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..++|+|+.|.|||||++.+..-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999998764
No 491
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.50 E-value=0.046 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHcc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
..+|.++|+.|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998765
No 492
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.49 E-value=0.033 Score=44.58 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=19.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHccc
Q 045226 181 FRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 181 ~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
...|.|-|+.|+||||+++.+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998764
No 493
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.45 E-value=0.043 Score=43.08 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=18.0
Q ss_pred EEEEE-ecCCCcHHHHHHHHHcc
Q 045226 183 VIALV-GMGGIGKTTLAQEVYND 204 (266)
Q Consensus 183 vi~Iv-G~gGvGKTtLA~~v~~~ 204 (266)
+|+|+ +-||+||||+|..+..-
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~ 24 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAY 24 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHH
Confidence 67776 66999999999887654
No 494
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.44 E-value=0.049 Score=43.95 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=18.7
Q ss_pred EEEEEEe-cCCCcHHHHHHHHHcc
Q 045226 182 RVIALVG-MGGIGKTTLAQEVYND 204 (266)
Q Consensus 182 ~vi~IvG-~gGvGKTtLA~~v~~~ 204 (266)
++|+|+| -||+||||+|..+...
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~ 26 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATG 26 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCcHHHHHHHHHHH
Confidence 6888875 5899999999887654
No 495
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.40 E-value=0.047 Score=46.71 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
....++|+|..|+|||||...+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999987653
No 496
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.39 E-value=0.044 Score=48.28 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=55.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCCcHHHHHHHHHcccccc-----C-CC----ceEEEEecCCCC-HHHHHHHHHH
Q 045226 165 RVLDMVLKNDPCDAANFRVIALVGMGGIGKTTLAQEVYNDKRVE-----D-FK----PKAWVCVSDDFD-VLRISKAILE 233 (266)
Q Consensus 165 ~l~~~L~~~~~~~~~~~~vi~IvG~gGvGKTtLA~~v~~~~~~~-----~-F~----~~~wv~vs~~~~-~~~i~~~il~ 233 (266)
+.++.|..-. .-.-++|.|..|+|||+|+..+.+..... . -+ .++++-+.+..+ ..++.+++.+
T Consensus 136 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 3566665533 13567899999999999999998875441 0 02 567777776543 3445555443
Q ss_pred HhcCC-------CCCCCChHH-----HHHHHHHHc---CCceEEEEeC
Q 045226 234 SITLS-------SCDLKDLNS-----VQLKLKEAL---LKKKFFDCLG 266 (266)
Q Consensus 234 ~l~~~-------~~~~~~~~~-----~~~~l~~~L---~~kr~LiVLD 266 (266)
.-... ..+...... ..-.+-+++ ++|..||++|
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~D 258 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILT 258 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 21011 011122221 222345555 3789999987
No 497
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.38 E-value=0.059 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|.|.|+.|+||||+|+.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998765
No 498
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.32 E-value=0.04 Score=52.49 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=37.7
Q ss_pred CCccccchhhHHHHHHHHhcCCC-C------CCCCcEEEEEEecCCCcHHHHHHHHHccc
Q 045226 153 EPAVYGRDTEKARVLDMVLKNDP-C------DAANFRVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~-~------~~~~~~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
-.+++|.+..++.|.+.+.-... + +-.....+.++|++|+||||||+.+.+..
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35678888888888877643210 0 01234568899999999999999998864
No 499
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.32 E-value=0.055 Score=42.49 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHccc
Q 045226 182 RVIALVGMGGIGKTTLAQEVYNDK 205 (266)
Q Consensus 182 ~vi~IvG~gGvGKTtLA~~v~~~~ 205 (266)
.-|+|-|.-|+||||+++.+....
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999998864
No 500
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.31 E-value=0.057 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHcc
Q 045226 180 NFRVIALVGMGGIGKTTLAQEVYND 204 (266)
Q Consensus 180 ~~~vi~IvG~gGvGKTtLA~~v~~~ 204 (266)
...+|.+.|+.|+||||+|+.+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998765
Done!