BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045227
         (173 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q89AU1|NUOG_BUCBP NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp.
           Baizongia pistaciae (strain Bp) GN=nuoG PE=3 SV=1
          Length = 907

 Score = 32.7 bits (73), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 124 VQDLTSSAAGTIRLFLFNKRG-----IVSFFRHWINKILSCFKILFTQTDDSG 171
           +QD+T  A  T+R + F KR      +  F  H +N+ +SC++ +    D SG
Sbjct: 114 LQDMTVMAGHTVRRYRFTKRTHKNQYLGHFITHEMNRCISCYRCVRYYKDYSG 166


>sp|Q810M1|CD022_MOUSE Uncharacterized protein C4orf22 homolog OS=Mus musculus PE=2 SV=1
          Length = 233

 Score = 32.7 bits (73), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 14  GDSVASSPQHGLHLKSVRFICYFGGEIRLGPNDNKLRYVGGDTHIISVHRSSTFLALQTK 73
           G  V+    +   LKS  F  YF G+ RL P    + +   D+HI   + S  +  +   
Sbjct: 123 GQEVSGYIDYAHRLKSEDFEVYFNGKRRLLPRTTDMSFYNWDSHIAVCNSSPNYQVIADN 182

Query: 74  P 74
           P
Sbjct: 183 P 183


>sp|B4F271|PURA_PROMH Adenylosuccinate synthetase OS=Proteus mirabilis (strain HI4320)
           GN=purA PE=3 SV=1
          Length = 432

 Score = 32.0 bits (71), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 58  IISVHRSSTFLAL----QTKPLKLAGMAESDISVKYQLPNGELISVT--SDEDVENMMAE 111
           II++ R+    +L     TK   L G+ E  + V Y+LPNGE+I  T  + +D E +   
Sbjct: 313 IIAIRRAVQINSLSGFCMTKLDVLDGLKEVKVCVGYRLPNGEVIETTPLAADDWEGIEPI 372

Query: 112 YDRILG 117
           Y+ + G
Sbjct: 373 YESMPG 378


>sp|B8EBR5|TYSY_SHEB2 Thymidylate synthase OS=Shewanella baltica (strain OS223) GN=thyA
           PE=3 SV=1
          Length = 264

 Score = 31.2 bits (69), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 51  YVGGDTHIISVHRSSTFLALQTKPLKLAGMA---ESDISVKYQLPNGELISVTSDEDVEN 107
           + GGDTH+ S H   T L L  +P+ L  M    + +    YQ  + EL +      ++ 
Sbjct: 201 WTGGDTHLYSNHMEQTALQLSREPMPLPTMTILRKPESIFDYQFDDFELTNYAPHPHIKA 260

Query: 108 MMA 110
            +A
Sbjct: 261 PVA 263


>sp|A9L5M3|TYSY_SHEB9 Thymidylate synthase OS=Shewanella baltica (strain OS195) GN=thyA
           PE=3 SV=1
          Length = 264

 Score = 31.2 bits (69), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 51  YVGGDTHIISVHRSSTFLALQTKPLKLAGM 80
           + GGDTH+ S H   T L L  +P+ L  M
Sbjct: 201 WTGGDTHLYSNHMEQTALQLSREPMPLPTM 230


>sp|A6WKP4|TYSY_SHEB8 Thymidylate synthase OS=Shewanella baltica (strain OS185) GN=thyA
           PE=3 SV=1
          Length = 264

 Score = 31.2 bits (69), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 51  YVGGDTHIISVHRSSTFLALQTKPLKLAGM 80
           + GGDTH+ S H   T L L  +P+ L  M
Sbjct: 201 WTGGDTHLYSNHMEQTALQLSREPMPLPTM 230


>sp|A3D1U3|TYSY_SHEB5 Thymidylate synthase OS=Shewanella baltica (strain OS155 / ATCC
           BAA-1091) GN=thyA PE=3 SV=1
          Length = 264

 Score = 31.2 bits (69), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 51  YVGGDTHIISVHRSSTFLALQTKPLKLAGM 80
           + GGDTH+ S H   T L L  +P+ L  M
Sbjct: 201 WTGGDTHLYSNHMEQTALQLSREPMPLPTM 230


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,506,841
Number of Sequences: 539616
Number of extensions: 2395812
Number of successful extensions: 6745
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6740
Number of HSP's gapped (non-prelim): 13
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)