Query 045227
Match_columns 173
No_of_seqs 122 out of 191
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 19:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 99.5 3.5E-14 1.2E-18 107.9 10.3 75 52-145 15-90 (103)
2 1vd2_A Protein kinase C, IOTA 98.8 3.7E-08 1.3E-12 72.5 10.6 74 54-142 15-89 (89)
3 2jrh_A Mitogen-activated prote 98.3 8.6E-06 2.9E-10 61.0 10.3 72 53-143 12-84 (94)
4 2npt_B Mitogen-activated prote 98.2 1.1E-05 3.9E-10 60.9 9.6 58 53-115 28-86 (100)
5 2c60_A Human mitogen-activated 98.2 1.4E-05 4.8E-10 61.2 9.8 58 53-115 39-97 (111)
6 2kkc_A Sequestosome-1; P62, PB 98.1 3.6E-05 1.2E-09 57.8 9.9 70 52-139 18-99 (102)
7 1oey_A P67-PHOX, neutrophil cy 97.9 2.1E-05 7.3E-10 57.3 6.7 61 48-111 9-70 (83)
8 2ktr_A Sequestosome-1; autopha 97.9 7.1E-05 2.4E-09 57.6 9.9 70 52-139 33-114 (117)
9 1q1o_A Cell division control p 97.7 0.00024 8.1E-09 53.3 8.6 60 54-113 22-86 (98)
10 1wmh_B Partitioning defective- 97.6 0.00026 8.8E-09 52.0 7.8 58 50-107 11-70 (86)
11 1pqs_A Cell division control p 97.6 0.00031 1.1E-08 50.2 7.9 58 55-112 2-64 (77)
12 1oey_J P40-PHOX, neutrophil cy 97.2 0.0015 5.3E-08 49.8 7.8 57 53-111 17-77 (107)
13 2bkf_A Zinc-finger protein NBR 96.9 0.017 5.7E-07 42.6 10.9 56 53-110 14-71 (87)
14 1wj6_A KIAA0049 protein, RSGI 96.4 0.028 9.5E-07 42.5 9.7 74 54-145 23-98 (101)
15 1ip9_A BEM1 protein; ubiquitin 94.7 0.089 3.1E-06 38.6 6.4 55 54-111 21-76 (85)
16 2npt_A Dual specificity mitoge 92.3 0.72 2.5E-05 34.9 7.9 55 62-117 34-88 (106)
17 3a9j_A Ubiquitin; protein comp 89.3 0.71 2.4E-05 29.5 4.9 41 49-89 5-45 (76)
18 2bwf_A Ubiquitin-like protein 87.7 1.3 4.3E-05 28.7 5.3 37 53-89 12-48 (77)
19 1ndd_A NEDD8, protein (ubiquit 86.8 1.2 4.2E-05 28.4 4.8 40 50-89 6-45 (76)
20 3v6c_B Ubiquitin; structural g 86.5 2.4 8.3E-05 28.8 6.5 38 52-89 25-62 (91)
21 2dzi_A Ubiquitin-like protein 86.4 1.6 5.6E-05 28.4 5.4 37 53-89 16-52 (81)
22 3mtn_B UBA80, ubcep1, ubiquiti 85.5 1.6 5.6E-05 28.5 5.1 40 50-89 9-48 (85)
23 2kzr_A Ubiquitin thioesterase 84.9 0.82 2.8E-05 31.3 3.4 46 49-95 5-51 (86)
24 3phx_B Ubiquitin-like protein 84.4 2 7E-05 28.1 5.1 41 49-89 9-49 (79)
25 4dwf_A HLA-B-associated transc 84.1 2.3 8E-05 28.6 5.5 41 49-89 10-50 (90)
26 1wh3_A 59 kDa 2'-5'-oligoadeny 84.0 2.3 7.8E-05 28.3 5.3 37 53-89 16-52 (87)
27 3n3k_B Ubiquitin; hydrolase, p 83.8 1.8 6.1E-05 28.4 4.7 40 50-89 9-48 (85)
28 1yx5_B Ubiquitin; proteasome, 83.3 2.2 7.7E-05 29.4 5.2 41 49-89 5-45 (98)
29 1v86_A DNA segment, CHR 7, way 83.1 5 0.00017 27.9 7.0 45 27-87 15-59 (95)
30 4eew_A Large proline-rich prot 82.9 4 0.00014 27.3 6.2 41 49-89 22-62 (88)
31 3k9o_B Ubiquitin, UBB+1; E2-25 81.6 2.9 0.0001 28.3 5.2 41 49-89 6-46 (96)
32 2kd0_A LRR repeats and ubiquit 81.3 2.8 9.6E-05 28.6 5.0 38 52-89 19-56 (85)
33 3dbh_I NEDD8; cell cycle, acti 80.8 2.6 9E-05 27.9 4.6 38 52-89 20-57 (88)
34 1sif_A Ubiquitin; hydrophobic 79.4 3.5 0.00012 28.1 4.9 41 49-89 14-54 (88)
35 4hcn_B Polyubiquitin, ubiquiti 79.0 3.3 0.00011 28.8 4.8 38 52-89 30-67 (98)
36 2hj8_A Interferon-induced 17 k 79.0 3.9 0.00013 27.8 5.1 38 52-89 12-49 (88)
37 2uyz_B Small ubiquitin-related 78.9 4.8 0.00016 26.3 5.4 39 51-89 10-48 (79)
38 2kk8_A Uncharacterized protein 78.4 4.2 0.00015 27.8 5.2 41 49-89 15-55 (84)
39 3q3f_A Ribonuclease/ubiquitin 77.6 5.4 0.00019 32.0 6.3 58 31-89 88-150 (189)
40 1wxv_A BAG-family molecular ch 76.8 6.1 0.00021 26.8 5.6 37 54-90 16-57 (92)
41 4fbj_B NEDD8; effector-HOST ta 76.8 4.8 0.00016 27.4 5.0 40 50-89 6-45 (88)
42 1wjn_A Tubulin-folding protein 76.8 5.9 0.0002 27.4 5.6 40 53-92 21-60 (97)
43 1wy8_A NP95-like ring finger p 76.7 6.1 0.00021 26.3 5.5 37 53-89 16-54 (89)
44 3u30_A Ubiquitin, linear DI-ub 76.6 6.3 0.00022 29.7 6.2 39 51-89 27-65 (172)
45 2ojr_A Ubiquitin; lanthide-bin 76.4 5.7 0.00019 28.3 5.6 37 53-89 44-80 (111)
46 3b08_A Polyubiquitin-C, ubiqui 76.4 15 0.00051 26.2 7.9 41 49-89 81-121 (152)
47 2wyq_A HHR23A, UV excision rep 74.8 6.6 0.00023 25.8 5.2 41 49-89 10-53 (85)
48 1v5o_A 1700011N24RIK protein; 74.7 10 0.00036 26.4 6.5 37 53-89 20-56 (102)
49 1wyw_B Ubiquitin-like protein 74.5 6.6 0.00022 27.3 5.4 37 53-89 30-66 (97)
50 2pjh_A Protein NPL4, nuclear p 73.9 1.4 4.9E-05 30.4 1.8 43 50-93 10-52 (80)
51 1ttn_A DC-UBP, dendritic cell- 73.9 4.9 0.00017 28.4 4.7 37 53-89 32-68 (106)
52 3vdz_A Ubiquitin-40S ribosomal 73.7 6 0.0002 28.3 5.1 37 53-89 44-80 (111)
53 2kdi_A Ubiquitin, vacuolar pro 73.2 5.8 0.0002 28.6 5.0 41 49-89 14-54 (114)
54 3u30_A Ubiquitin, linear DI-ub 72.5 15 0.00053 27.5 7.4 41 49-89 101-141 (172)
55 2faz_A Ubiquitin-like containi 71.7 9.2 0.00031 24.7 5.3 38 52-89 10-49 (78)
56 2kan_A Uncharacterized protein 71.1 8.1 0.00028 26.9 5.2 34 56-89 26-59 (94)
57 3m62_B UV excision repair prot 70.6 4 0.00014 29.0 3.5 41 49-89 6-46 (106)
58 1v5t_A 8430435I17RIK protein; 69.4 7.1 0.00024 26.7 4.5 29 53-81 15-44 (90)
59 1k8r_B Protein kinase BYR2; si 68.8 11 0.00037 28.6 5.6 79 49-148 3-85 (110)
60 1wgg_A Ubiquitin carboxyl-term 68.4 8.5 0.00029 26.9 4.8 29 53-81 15-44 (96)
61 1wx7_A Ubiquilin 3; ubiquitin- 67.9 10 0.00035 26.5 5.2 33 58-90 30-62 (106)
62 1we7_A SF3A1 protein; structur 67.5 9.8 0.00034 27.2 5.1 38 52-89 43-80 (115)
63 2l7r_A Ubiquitin-like protein 64.7 13 0.00045 25.5 5.2 37 54-90 27-63 (93)
64 1uel_A HHR23B, UV excision rep 64.6 13 0.00046 25.4 5.2 40 50-89 6-48 (95)
65 2klc_A Ubiquilin-1; ubiquitin- 64.3 14 0.00048 25.9 5.3 35 55-89 35-69 (101)
66 1wx8_A Riken cDNA 4931431F19; 64.2 9 0.00031 26.0 4.2 36 54-89 26-61 (96)
67 3b08_A Polyubiquitin-C, ubiqui 64.1 11 0.00039 26.9 4.9 39 51-89 7-45 (152)
68 3rt3_B Ubiquitin-like protein 63.3 33 0.0011 25.1 7.4 40 50-89 87-126 (159)
69 3m63_B Ubiquitin domain-contai 61.9 4.6 0.00016 28.6 2.4 37 53-89 36-72 (101)
70 1j8c_A Ubiquitin-like protein 61.7 17 0.00057 26.8 5.5 35 56-90 43-77 (125)
71 3plu_A Ubiquitin-like modifier 59.5 15 0.00052 26.7 4.8 39 51-89 28-66 (93)
72 1uh6_A Ubiquitin-like 5; beta- 59.5 13 0.00043 27.2 4.4 37 54-90 38-74 (100)
73 1we6_A Splicing factor, putati 58.8 14 0.00048 26.1 4.5 37 53-89 39-76 (111)
74 3b1l_X E3 ubiquitin-protein li 63.0 2.1 7E-05 27.7 0.0 40 50-89 6-45 (76)
75 1yqb_A Ubiquilin 3; structural 56.5 18 0.00061 25.3 4.7 32 58-89 35-66 (100)
76 1wm3_A Ubiquitin-like protein 56.3 29 0.00098 22.8 5.5 37 53-89 10-46 (72)
77 3rt3_B Ubiquitin-like protein 54.6 31 0.0011 25.2 6.0 40 50-89 8-48 (159)
78 2daf_A FLJ35834 protein; hypot 53.8 26 0.0009 26.6 5.5 38 53-90 25-62 (118)
79 3a4r_A Nfatc2-interacting prot 53.4 35 0.0012 22.9 5.7 37 53-89 16-53 (79)
80 3l0w_B Monoubiquitinated proli 52.2 23 0.0008 27.2 5.1 40 50-89 6-45 (169)
81 2eke_C Ubiquitin-like protein 50.9 34 0.0012 25.0 5.6 37 53-89 39-75 (106)
82 2io0_B Small ubiquitin-related 48.6 42 0.0015 23.5 5.6 37 53-89 14-50 (91)
83 1wgd_A Homocysteine-responsive 48.3 32 0.0011 23.2 4.8 34 56-89 21-56 (93)
84 2kjr_A CG11242; UBL, ubiquitin 47.1 54 0.0018 23.0 6.0 35 56-90 29-63 (95)
85 2kj6_A Tubulin folding cofacto 47.1 33 0.0011 24.3 4.9 34 56-89 28-61 (97)
86 1x1m_A Ubiquitin-like protein 45.7 29 0.00098 24.4 4.4 41 49-89 17-72 (107)
87 2d07_B Ubiquitin-like protein 44.6 47 0.0016 23.1 5.3 37 53-89 26-62 (93)
88 2io1_B Small ubiquitin-related 43.5 50 0.0017 23.1 5.3 37 53-89 16-52 (94)
89 3kf8_B Protein TEN1; OB fold; 40.8 7.1 0.00024 30.2 0.5 26 4-35 6-31 (123)
90 4b6w_A Tubulin-specific chaper 40.7 26 0.0009 24.1 3.4 33 58-90 18-50 (86)
91 1wju_A NEDD8 ultimate buster-1 39.0 46 0.0016 24.1 4.6 28 53-80 28-55 (100)
92 1t0y_A Tubulin folding cofacto 38.7 44 0.0015 24.2 4.5 34 56-89 19-52 (122)
93 1wz0_A Ubiquitin-like protein 37.6 52 0.0018 23.7 4.7 37 53-89 33-69 (104)
94 1v6e_A Cytoskeleton-associated 37.6 33 0.0011 23.5 3.5 34 56-89 20-53 (95)
95 2k8h_A Small ubiquitin protein 37.4 61 0.0021 23.7 5.1 36 54-89 36-71 (110)
96 2dzm_A FAS-associated factor 1 35.9 56 0.0019 23.4 4.7 34 54-87 18-51 (100)
97 3u5e_m 60S ribosomal protein L 35.6 7.8 0.00027 28.3 0.0 32 50-81 6-37 (128)
98 1wia_A Hypothetical ubiquitin- 35.1 32 0.0011 23.2 3.1 34 53-89 16-49 (95)
99 3ai5_A Yeast enhanced green fl 33.9 51 0.0017 28.3 4.8 40 50-89 239-278 (307)
100 2jxx_A Nfatc2-interacting prot 33.9 1.1E+02 0.0038 21.9 6.0 60 16-89 12-71 (97)
101 1wf9_A NPL4 family protein; be 32.4 38 0.0013 23.9 3.2 28 53-81 16-44 (107)
102 2al6_A Focal adhesion kinase 1 32.3 1.2E+02 0.004 25.7 6.8 98 53-160 20-129 (375)
103 2i1s_A Hypothetical protein; m 29.0 1E+02 0.0035 23.9 5.5 26 56-81 23-48 (188)
104 1y8x_B Ubiquitin-activating en 28.5 25 0.00085 25.6 1.7 55 53-108 3-59 (98)
105 2lxa_A Ubiquitin-like protein 27.1 64 0.0022 22.3 3.6 41 49-89 6-49 (87)
106 2xzm_9 RPS31E; ribosome, trans 26.6 14 0.00047 29.9 0.0 57 50-109 6-65 (189)
107 3kyd_D Small ubiquitin-related 25.0 1.5E+02 0.0052 21.9 5.6 36 54-89 50-85 (115)
108 1hbw_A Regulatory protein GAL4 25.0 16 0.00054 25.0 0.1 39 67-111 5-46 (57)
109 3u5c_f 40S ribosomal protein S 24.3 16 0.00055 28.1 0.0 40 50-89 6-45 (152)
110 2al3_A TUG long isoform; TUG U 23.1 77 0.0026 22.9 3.5 41 50-90 15-55 (90)
111 1egw_A MADS box transcription 23.0 1.4E+02 0.0048 20.7 4.7 45 68-116 25-72 (77)
112 3p57_A Myocyte-specific enhanc 22.6 1.6E+02 0.0056 21.1 5.1 44 69-116 26-72 (90)
113 3uf8_A Ubiquitin-like protein 21.9 2E+02 0.0068 22.6 6.0 34 57-90 33-66 (209)
114 3ady_A DOTD; 3-layer(BAB) sand 21.1 1.2E+02 0.0042 23.7 4.5 68 29-101 36-108 (148)
115 2kvr_A Ubiquitin carboxyl-term 20.8 1.1E+02 0.0037 22.9 4.0 34 55-88 56-89 (130)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.54 E-value=3.5e-14 Score=107.86 Aligned_cols=75 Identities=20% Similarity=0.402 Sum_probs=65.5
Q ss_pred ecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEeecCCCC-eeeecChHHHHHHHHHHHHHhhcccccccccccCC
Q 045227 52 VGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQLPNGE-LISVTSDEDVENMMAEYDRILGSALQDDVQDLTSS 130 (173)
Q Consensus 52 vGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgED-LISVssDeDL~~MmeEYdrl~~~~~~~~~~~~~s~ 130 (173)
.+||+|||.|+|.++|.||..|+.++||. .+.|.|+ +.+ ||+++|+|||++.||+|||..
T Consensus 15 ~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq---~ldL~y~--n~EllIpl~sQeDLDkaIellDrss-------------- 75 (103)
T 2cu1_A 15 HRGEKRILQFPRPVKLEDLRSKAKIAFGQ---SMDLHYT--NNELVIPLTTQDDLDKAVELLDRSI-------------- 75 (103)
T ss_dssp ETTEEEEEEEESSCCHHHHHHHHHHHHSS---CEEEEEC--SSSSCEECCSHHHHHHHHHHHHHCS--------------
T ss_pred ecCeEEEEeccCCccHHHHHHHHHHHhCC---eeeEEEe--cceEEEeccCHHHHHHHHHHHccCC--------------
Confidence 47999999999999999999999999997 8999999 666 999999999999999999952
Q ss_pred CCceeEEEEecCCCc
Q 045227 131 AAGTIRLFLFNKRGI 145 (173)
Q Consensus 131 ~~~rlRvFLFp~~~~ 145 (173)
...-||++|-+.+..
T Consensus 76 ~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 76 HMKSLKILLVINGST 90 (103)
T ss_dssp SCCSEEEEEEECCCC
T ss_pred cccceEEEEecCCCC
Confidence 344567788876654
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=98.82 E-value=3.7e-08 Score=72.49 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCChHHHHHhHHHHhCCC-CcceEEEeecCCCCeeeecChHHHHHHHHHHHHHhhcccccccccccCCCC
Q 045227 54 GDTHIISVHRSSTFLALQTKPLKLAGMA-ESDISVKYQLPNGELISVTSDEDVENMMAEYDRILGSALQDDVQDLTSSAA 132 (173)
Q Consensus 54 GeTRIv~V~Rsisf~eL~~kLs~l~g~~-~~~~~lKYQLPgEDLISVssDeDL~~MmeEYdrl~~~~~~~~~~~~~s~~~ 132 (173)
|+.|++.|+.+++|.+|..|+.++|+.. ..++++||-=-.+|+|+++||+||+..+.-|..- +.
T Consensus 15 gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n---------------~~ 79 (89)
T 1vd2_A 15 GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELN---------------KD 79 (89)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHT---------------SC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHcc---------------CC
Confidence 5689999999999999999999999964 3579999984433499999999999999887663 46
Q ss_pred ceeEEEEecC
Q 045227 133 GTIRLFLFNK 142 (173)
Q Consensus 133 ~rlRvFLFp~ 142 (173)
.+|.+.+||.
T Consensus 80 ~~l~ihvf~~ 89 (89)
T 1vd2_A 80 SELLIHVFPC 89 (89)
T ss_dssp CCEEEEEEEC
T ss_pred CCEEEEEccC
Confidence 7899999984
No 3
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=98.27 E-value=8.6e-06 Score=60.96 Aligned_cols=72 Identities=22% Similarity=0.461 Sum_probs=62.0
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEeecCCCC-eeeecChHHHHHHHHHHHHHhhcccccccccccCCC
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQLPNGE-LISVTSDEDVENMMAEYDRILGSALQDDVQDLTSSA 131 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgED-LISVssDeDL~~MmeEYdrl~~~~~~~~~~~~~s~~ 131 (173)
-||.|||-++|.++|.||.+|+...||. .+.+-|- +++ +|.+.|.+||+.-+|-.||- +.
T Consensus 12 ~gEKRIi~f~RPvkf~dl~qkv~~afGq---~ldl~y~--nnEL~iPL~~Q~DLDkAvelLDrs--------------~~ 72 (94)
T 2jrh_A 12 NGERRIIAFSRPVKYEDVEHKVTTVFGQ---PLDLHYM--NNELSILLKNQDDLDKAIDILDRS--------------SS 72 (94)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHCS---SEEEEEE--CSSCEEECCSHHHHHHHHHHHHHS--------------TT
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCC---eeeeEEe--cceeEEeccCHHHHHHHHHHhccC--------------cc
Confidence 4899999999999999999999999997 7899998 555 99999999999999998873 34
Q ss_pred CceeEEEEecCC
Q 045227 132 AGTIRLFLFNKR 143 (173)
Q Consensus 132 ~~rlRvFLFp~~ 143 (173)
---||+.|-...
T Consensus 73 mkSLRIlL~~~~ 84 (94)
T 2jrh_A 73 MKSLRILLLSQD 84 (94)
T ss_dssp TTEEEEEEEECS
T ss_pred ccceEEEEEcCC
Confidence 556788887554
No 4
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=98.19 E-value=1.1e-05 Score=60.89 Aligned_cols=58 Identities=24% Similarity=0.457 Sum_probs=53.1
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEeecCCCC-eeeecChHHHHHHHHHHHHH
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQLPNGE-LISVTSDEDVENMMAEYDRI 115 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgED-LISVssDeDL~~MmeEYdrl 115 (173)
-||.|||-++|.+.|.||..|+...||. .+.+-|- +++ +|-+.|.+||+.-||-.||-
T Consensus 28 ~gEkRIi~f~RPv~f~el~~kv~~afGq---~ldl~y~--nnEL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 28 RGEKRILQFPRPVKLEDLRSKAKIAFGQ---SMDLHYT--NNELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHTS---CEEEEEE--ETTEEEECCCHHHHHHHHHHHHHC
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCC---eeeeEEe--cceeEEecccHHHHHHHHHHhccC
Confidence 4799999999999999999999999997 7899998 555 99999999999999998873
No 5
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=98.17 E-value=1.4e-05 Score=61.25 Aligned_cols=58 Identities=22% Similarity=0.438 Sum_probs=52.8
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEeecCCCC-eeeecChHHHHHHHHHHHHH
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQLPNGE-LISVTSDEDVENMMAEYDRI 115 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgED-LISVssDeDL~~MmeEYdrl 115 (173)
-||.|||-++|.++|.||.+|+...||. .+.+-|- +++ +|.+.|.+||+.-+|-.||-
T Consensus 39 ~gEKRIiqf~RPvkf~dl~qkv~~afGq---~ldl~y~--nnEL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 39 NGERRIIAFSRPVKYEDVEHKVTTVFGQ---PLDLHYM--NNELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHSS---CCEEEEE--CSSCEEECCSHHHHHHHHHHHHHC
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCC---eeeeEEe--cceEEEecccHHHHHHHHHHhccC
Confidence 4799999999999999999999999997 7889888 555 99999999999999998873
No 6
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=98.05 E-value=3.6e-05 Score=57.80 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=56.7
Q ss_pred ecCceEEEEEcCC-----------CChHHHHHhHHHHhC-CCCcceEEEeecCCCCeeeecChHHHHHHHHHHHHHhhcc
Q 045227 52 VGGDTHIISVHRS-----------STFLALQTKPLKLAG-MAESDISVKYQLPNGELISVTSDEDVENMMAEYDRILGSA 119 (173)
Q Consensus 52 vGGeTRIv~V~Rs-----------isf~eL~~kLs~l~g-~~~~~~~lKYQLPgEDLISVssDeDL~~MmeEYdrl~~~~ 119 (173)
.|.|.|=++++++ .+|.+|+.++.++|. .....+.|||.=..+|||+++|||||...+..
T Consensus 18 ~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~-------- 89 (102)
T 2kkc_A 18 AAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSY-------- 89 (102)
T ss_dssp CEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHHHH--------
T ss_pred CCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHHHh--------
Confidence 3789999999874 489999999999985 23347999999655669999999999987765
Q ss_pred cccccccccCCCCceeEEEE
Q 045227 120 LQDDVQDLTSSAAGTIRLFL 139 (173)
Q Consensus 120 ~~~~~~~~~s~~~~rlRvFL 139 (173)
.+..-||||+
T Consensus 90 ----------~~~~~lRlyV 99 (102)
T 2kkc_A 90 ----------VKDDIFRIYI 99 (102)
T ss_dssp ----------CCSSEEEEEE
T ss_pred ----------cCCCeEEEEE
Confidence 1356889986
No 7
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.94 E-value=2.1e-05 Score=57.28 Aligned_cols=61 Identities=11% Similarity=0.233 Sum_probs=52.3
Q ss_pred ceeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEeecCCCC-eeeecChHHHHHHHHH
Q 045227 48 KLRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQLPNGE-LISVTSDEDVENMMAE 111 (173)
Q Consensus 48 ~LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgED-LISVssDeDL~~MmeE 111 (173)
|.+|. .|.+|.|+++++|++|..++++-++.....+.|-|.=|.+. ++ +.+||||+.++..
T Consensus 9 KV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v-i~~d~dl~~aw~~ 70 (83)
T 1oey_A 9 KVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV-PLSEDSMKDAWGQ 70 (83)
T ss_dssp EEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE-ECCTTTHHHHHTT
T ss_pred EEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee-ccChHHHHHHHHh
Confidence 35666 79999999999999999999999987556789999997555 99 9999999998754
No 8
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=97.94 E-value=7.1e-05 Score=57.64 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=56.5
Q ss_pred ecCceEEEEEcCC-----------CChHHHHHhHHHHhC-CCCcceEEEeecCCCCeeeecChHHHHHHHHHHHHHhhcc
Q 045227 52 VGGDTHIISVHRS-----------STFLALQTKPLKLAG-MAESDISVKYQLPNGELISVTSDEDVENMMAEYDRILGSA 119 (173)
Q Consensus 52 vGGeTRIv~V~Rs-----------isf~eL~~kLs~l~g-~~~~~~~lKYQLPgEDLISVssDeDL~~MmeEYdrl~~~~ 119 (173)
.++|.|=++++.+ .+|..|+.++.++|. .....+.|||.=..+|||+++|||||..-+.+
T Consensus 33 ~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~-------- 104 (117)
T 2ktr_A 33 AAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSY-------- 104 (117)
T ss_dssp CEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHHHH--------
T ss_pred CCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHHHh--------
Confidence 3689999999865 399999999999994 33357999999666669999999999886664
Q ss_pred cccccccccCCCCceeEEEE
Q 045227 120 LQDDVQDLTSSAAGTIRLFL 139 (173)
Q Consensus 120 ~~~~~~~~~s~~~~rlRvFL 139 (173)
.+..-||+|+
T Consensus 105 ----------~~~~~lRlyV 114 (117)
T 2ktr_A 105 ----------VKDDIFRIYI 114 (117)
T ss_dssp ----------CCSSEEEEEE
T ss_pred ----------cCCCeEEEEE
Confidence 1356889987
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=97.66 E-value=0.00024 Score=53.26 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCChHHHHHhHHHHhCCC-C----cceEEEeecCCCCeeeecChHHHHHHHHHHH
Q 045227 54 GDTHIISVHRSSTFLALQTKPLKLAGMA-E----SDISVKYQLPNGELISVTSDEDVENMMAEYD 113 (173)
Q Consensus 54 GeTRIv~V~Rsisf~eL~~kLs~l~g~~-~----~~~~lKYQLPgEDLISVssDeDL~~MmeEYd 113 (173)
++++.|.|+.+|+|.+|..|+.+.++.. . ..+.||||==+.|.|++.+||||+-.++...
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 6899999999999999999998876631 1 2368999964444999999999999998863
No 10
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=97.60 E-value=0.00026 Score=52.01 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=50.7
Q ss_pred eeecCceEEEEEcCC--CChHHHHHhHHHHhCCCCcceEEEeecCCCCeeeecChHHHHH
Q 045227 50 RYVGGDTHIISVHRS--STFLALQTKPLKLAGMAESDISVKYQLPNGELISVTSDEDVEN 107 (173)
Q Consensus 50 rYvGGeTRIv~V~Rs--isf~eL~~kLs~l~g~~~~~~~lKYQLPgEDLISVssDeDL~~ 107 (173)
..-|+|.|=.+++|+ .+|.+|..++..++.....++.|+|.=+.+|||.++|||+|..
T Consensus 11 skf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInnDdnl~~ 70 (86)
T 1wmh_B 11 SKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHR 70 (86)
T ss_dssp EEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHH
T ss_pred eecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeecCHHHHHH
Confidence 346889999999977 8999999999999987666999999988888999999998754
No 11
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=97.58 E-value=0.00031 Score=50.23 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCChHHHHHhHHHHhCCC-----CcceEEEeecCCCCeeeecChHHHHHHHHHH
Q 045227 55 DTHIISVHRSSTFLALQTKPLKLAGMA-----ESDISVKYQLPNGELISVTSDEDVENMMAEY 112 (173)
Q Consensus 55 eTRIv~V~Rsisf~eL~~kLs~l~g~~-----~~~~~lKYQLPgEDLISVssDeDL~~MmeEY 112 (173)
+++.|.|+.+|+|.+|..|+.+.++.. ...+.||||==.+|.|++.+|+||.--++..
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 689999999999999999999988853 2467899985533499999999999988876
No 12
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.16 E-value=0.0015 Score=49.81 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=51.8
Q ss_pred cCceEEEEEcCCC----ChHHHHHhHHHHhCCCCcceEEEeecCCCCeeeecChHHHHHHHHH
Q 045227 53 GGDTHIISVHRSS----TFLALQTKPLKLAGMAESDISVKYQLPNGELISVTSDEDVENMMAE 111 (173)
Q Consensus 53 GGeTRIv~V~Rsi----sf~eL~~kLs~l~g~~~~~~~lKYQLPgEDLISVssDeDL~~MmeE 111 (173)
|-.+|=|+|..++ +|.||...+...+.. .++.|+|+=+..|||-+.+|||+..|+.+
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~~--~DIaLNYrD~eGDLIrilddeDv~lmi~~ 77 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQR--EDIALNYRDAEGDLVRLLSDEDVALMVRQ 77 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCC--SSEEEEEECTTSCEEECCSHHHHHHHHHH
T ss_pred CceeeeEEEccccccCCCHHHHHHHHHHHhcc--cceeeeeecCCCCEEEEcchHHHHHHHHH
Confidence 5578889998876 699999999999986 69999999999999999999999999998
No 13
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=96.88 E-value=0.017 Score=42.60 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=46.8
Q ss_pred cCceEEEEE--cCCCChHHHHHhHHHHhCCCCcceEEEeecCCCCeeeecChHHHHHHHH
Q 045227 53 GGDTHIISV--HRSSTFLALQTKPLKLAGMAESDISVKYQLPNGELISVTSDEDVENMMA 110 (173)
Q Consensus 53 GGeTRIv~V--~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgEDLISVssDeDL~~Mme 110 (173)
.||++.+.| .|.++|.+|.+.+...||. .++.|||.==.+|.|+|+|+++++.++.
T Consensus 14 ~ge~~rf~vs~~~~~tweel~~mvk~~f~L--~~~~ikY~DEenD~v~i~Sq~E~eEAlk 71 (87)
T 2bkf_A 14 KNEIQSFLVSDPENTTWADIEAMVKVSFDL--NTIQIKYLDEENEEVSINSQGEYEEALK 71 (87)
T ss_dssp TTEEEEEEESCGGGCCHHHHHHHHHHHHTC--SSEEEEEECTTSCEEEECSHHHHHHHHH
T ss_pred cCCeeEEEeccCCCCCHHHHHHHHHHHcCC--CceEEEEEcCCCCEEEEecHHHHHHHHH
Confidence 577888666 5699999999999999998 5899999855555999999998877665
No 14
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=96.44 E-value=0.028 Score=42.46 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=55.3
Q ss_pred CceEEEEE--cCCCChHHHHHhHHHHhCCCCcceEEEeecCCCCeeeecChHHHHHHHHHHHHHhhcccccccccccCCC
Q 045227 54 GDTHIISV--HRSSTFLALQTKPLKLAGMAESDISVKYQLPNGELISVTSDEDVENMMAEYDRILGSALQDDVQDLTSSA 131 (173)
Q Consensus 54 GeTRIv~V--~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgEDLISVssDeDL~~MmeEYdrl~~~~~~~~~~~~~s~~ 131 (173)
||++.+.| .|.++|.+|.+.+...||. .++.|||.==.+|.|+|+++++++.++.= ... +
T Consensus 23 ge~~rF~Vs~~~~~tweel~~mvk~~f~L--~~~~IkY~DEenD~V~i~Sq~E~eEAlkv----a~k------------~ 84 (101)
T 1wj6_A 23 NEIQSFLVSDPENTTWADIEAMVKVSFDL--NTIQIKYLDEENEEVSINSQGEYEEALKM----AVK------------Q 84 (101)
T ss_dssp TEEEEEEESCTTTSCHHHHHHHHHHHHCC--SSBCCEEECTTSCEECCCSHHHHHHHHHH----HHH------------H
T ss_pred CCeeEEEecCCCCCCHHHHHHHHHHHcCC--CceEEEEecCCCCEEEEecHHHHHHHHHH----hcc------------C
Confidence 44555445 6799999999999999998 58999998555559999999988776653 222 2
Q ss_pred CceeEEEEecCCCc
Q 045227 132 AGTIRLFLFNKRGI 145 (173)
Q Consensus 132 ~~rlRvFLFp~~~~ 145 (173)
+..|++++|-..+.
T Consensus 85 ~n~L~m~V~~~~~~ 98 (101)
T 1wj6_A 85 GNQLQMQVHEGSGP 98 (101)
T ss_dssp TSEEEEECCBCCCS
T ss_pred CCEEEEEEeecccC
Confidence 46688888865444
No 15
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=94.66 E-value=0.089 Score=38.60 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEeecCCCC-eeeecChHHHHHHHHH
Q 045227 54 GDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQLPNGE-LISVTSDEDVENMMAE 111 (173)
Q Consensus 54 GeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgED-LISVssDeDL~~MmeE 111 (173)
++--+|.||.+|+|++|..|+..-... .++.+.+-. +|. =-.+.+|+||..-++.
T Consensus 21 DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~yk-de~~g~~i~sD~dl~~aiqr 76 (85)
T 1ip9_A 21 DDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKL-FDGSGEEIKTDSQVSNIIQA 76 (85)
T ss_dssp TCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECC-SSSCCSCCCSHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEec-CCCCCCcccCHHHHHHHHHh
Confidence 466789999999999999999998876 244443333 333 1288999999998765
No 16
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=92.26 E-value=0.72 Score=34.91 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=43.3
Q ss_pred cCCCChHHHHHhHHHHhCCCCcceEEEeecCCCCeeeecChHHHHHHHHHHHHHhh
Q 045227 62 HRSSTFLALQTKPLKLAGMAESDISVKYQLPNGELISVTSDEDVENMMAEYDRILG 117 (173)
Q Consensus 62 ~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgEDLISVssDeDL~~MmeEYdrl~~ 117 (173)
+..++|.++..-+......+ ....+.|.=-..|=|+|.+||+|+.|+.-|.....
T Consensus 34 ~~~L~FrDvL~~I~~vmP~a-T~TAFeYEDE~gDRITVRSDeE~kAMlsyy~~~~~ 88 (106)
T 2npt_A 34 GPQLLFRDVLDVIGQVLPEA-TTTAFEYEDEDGDRITVRSDEEMKAMLSYYYSTVM 88 (106)
T ss_dssp --CCCHHHHHHHHHHHSTTS-CCSEEEEECTTSCEEEECSHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhCccc-eeeeeeeccccCCeeEEcchHHHHHHHHHHHHHHH
Confidence 36799999999999988753 35578887555559999999999999998776543
No 17
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=89.28 E-value=0.71 Score=29.53 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=33.9
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
++..+|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 5 vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 34456888899999999999999999999998555667766
No 18
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=87.68 E-value=1.3 Score=28.67 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=31.1
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+|.+.-+.|+.+.+..+|+.++++..|.......|-|
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 6777889999999999999999999997555566666
No 19
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=86.80 E-value=1.2 Score=28.36 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=32.9
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+...|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 6 k~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp ECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred ECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 3446788889999999999999999999998555666666
No 20
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=86.50 E-value=2.4 Score=28.81 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=31.2
Q ss_pred ecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 52 VGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 52 vGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.+|.+.-+.|+.+.+..+|+.++.+..|.......|-|
T Consensus 25 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 25 LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 34667789999999999999999999997555566666
No 21
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.40 E-value=1.6 Score=28.37 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=30.7
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 16 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 16 QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4667778999999999999999999987555666666
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=85.52 E-value=1.6 Score=28.54 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=32.9
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+...|.+..+.|+.+.+..+|+.++++..+.......|-|
T Consensus 9 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 9 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp ECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 4456788899999999999999999999987555566666
No 23
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=84.91 E-value=0.82 Score=31.26 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=35.9
Q ss_pred eeeecCceEEEE-EcCCCChHHHHHhHHHHhCCCCcceEEEeecCCCC
Q 045227 49 LRYVGGDTHIIS-VHRSSTFLALQTKPLKLAGMAESDISVKYQLPNGE 95 (173)
Q Consensus 49 LrYvGGeTRIv~-V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgED 95 (173)
++..+|. ++|. |+.+.+..+|+.++++..|.......|.|--|+..
T Consensus 5 vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~ 51 (86)
T 2kzr_A 5 CKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPEC 51 (86)
T ss_dssp EEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCC
T ss_pred EEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcc
Confidence 5667785 4577 99999999999999999987545677888766543
No 24
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=84.38 E-value=2 Score=28.11 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=33.5
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
++..+|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 9 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 9 VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp EECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 34557888889999999999999999999998555566666
No 25
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=84.13 E-value=2.3 Score=28.58 Aligned_cols=41 Identities=7% Similarity=0.112 Sum_probs=34.3
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
++...|.+..+.|+.+.+..+|+.++.+..|.......|-|
T Consensus 10 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 10 VKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp EEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 45567889999999999999999999999997555566666
No 26
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.03 E-value=2.3 Score=28.29 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=30.7
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 16 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 16 DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 4667789999999999999999999987555666666
No 27
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=83.85 E-value=1.8 Score=28.44 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=33.5
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+...|.+..+.|+.+.+..+|+.++++..+.......|-|
T Consensus 9 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 9 KTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp ECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 4456788899999999999999999999998655666666
No 28
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=83.29 E-value=2.2 Score=29.38 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=34.1
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
++..+|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 5 Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 34556888899999999999999999999998555667776
No 29
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=83.08 E-value=5 Score=27.93 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=33.2
Q ss_pred CceEEEEeeeCCEEEecCCCCceeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEE
Q 045227 27 LKSVRFICYFGGEIRLGPNDNKLRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISV 87 (173)
Q Consensus 27 ~~kVKlmCSyGGrIlPRp~Dg~LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~l 87 (173)
...|++.+.++|+ +.-|.|+.+.+..+|+.++.+..|.......|
T Consensus 15 ~~~~~i~Vk~~g~----------------~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL 59 (95)
T 1v86_A 15 KELVDLKIIWNKT----------------KHDVKVPLDSTGSELKQKIHSITGLPPAMQKV 59 (95)
T ss_dssp CCCEEEEEEETTE----------------EEEEEECTTSBHHHHHHHHHHHHCSCSTTCCC
T ss_pred CceEEEEEEECCE----------------EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEE
Confidence 3567777766664 34489999999999999999999974333333
No 30
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=82.87 E-value=4 Score=27.30 Aligned_cols=41 Identities=7% Similarity=0.112 Sum_probs=33.9
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
++..+|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 22 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 22 VKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp EEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 45667888889999999999999999999987555556655
No 31
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=81.58 E-value=2.9 Score=28.33 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=34.0
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
++...|.+.-+.|+.+.+..+|+.++++..|.......|-|
T Consensus 6 vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 6 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 45567888899999999999999999999998555566666
No 32
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=81.32 E-value=2.8 Score=28.59 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=31.3
Q ss_pred ecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 52 VGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 52 vGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.+|++.-+.|+.+.+..+|+.++++..|.......|-|
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 46777788999999999999999999987555566665
No 33
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=80.82 E-value=2.6 Score=27.87 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=30.9
Q ss_pred ecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 52 VGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 52 vGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
..|.+.-+.|+.+.+..+|+.++++..|.......|-|
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 35677788999999999999999999987545555655
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=79.37 E-value=3.5 Score=28.08 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=34.0
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.+-..|++..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 14 v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 14 IKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 34557888899999999999999999999997555666766
No 35
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=79.00 E-value=3.3 Score=28.75 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=30.9
Q ss_pred ecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 52 VGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 52 vGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
..|.+..|.|+.+.+..+|+.++.+..|.......|-|
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 35667778999999999999999999997555556666
No 36
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=78.96 E-value=3.9 Score=27.76 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=31.1
Q ss_pred ecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 52 VGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 52 vGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
..|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 12 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp TTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 35677889999999999999999999987555556655
No 37
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=78.85 E-value=4.8 Score=26.26 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=32.5
Q ss_pred eecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 51 YVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 51 YvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
-..|.+..+.|.++.+..+|+.++++..|.......|-|
T Consensus 10 ~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 10 GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp CTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 346778889999999999999999999998555666666
No 38
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=78.40 E-value=4.2 Score=27.76 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=33.5
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.+...|++.-+.|+.+.+..+|+.++++..|.......|-|
T Consensus 15 vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 55 (84)
T 2kk8_A 15 VENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV 55 (84)
T ss_dssp EEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 34567888899999999999999999999997545556655
No 39
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=77.60 E-value=5.4 Score=31.99 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=46.0
Q ss_pred EEEeeeCCEEEecCCCC-----ceeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 31 RFICYFGGEIRLGPNDN-----KLRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 31 KlmCSyGGrIlPRp~Dg-----~LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
++++|-.|.+.. ..|. .++-..|.+..|.|+.+.+..+|+.++++..|.......|-|
T Consensus 88 r~~~s~dg~~y~-T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~ 150 (189)
T 3q3f_A 88 RILYSSDWLIYK-TTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 150 (189)
T ss_dssp EEEEETTCCEEE-ESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred ceEecCCCcEEE-cccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE
Confidence 789999998876 3554 255668999999999999999999999999987444444444
No 40
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.85 E-value=6.1 Score=26.81 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=28.4
Q ss_pred CceEEEEEcCC-----CChHHHHHhHHHHhCCCCcceEEEee
Q 045227 54 GDTHIISVHRS-----STFLALQTKPLKLAGMAESDISVKYQ 90 (173)
Q Consensus 54 GeTRIv~V~Rs-----isf~eL~~kLs~l~g~~~~~~~lKYQ 90 (173)
|.++.|.|+.+ .+..+|+.++++..|.......|-|.
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 34556789885 99999999999999875555666663
No 41
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=76.84 E-value=4.8 Score=27.37 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=33.0
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+...|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 6 k~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 4457888899999999999999999999997545556655
No 42
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=76.83 E-value=5.9 Score=27.43 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=33.5
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEeecC
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQLP 92 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLP 92 (173)
+|+..-+.++.+++..+|+.++.+.+|.......|-|.=.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~ 60 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESS 60 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcC
Confidence 4566668899999999999999999998767778888743
No 43
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.68 E-value=6.1 Score=26.31 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=29.8
Q ss_pred cC-ceEEE-EEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GG-DTHII-SVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GG-eTRIv-~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.| ++..+ .|+.+.+..+|+.++++..|.......|-|
T Consensus 16 ~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 54 (89)
T 1wy8_A 16 DGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY 54 (89)
T ss_dssp TCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE
T ss_pred CCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 35 56778 599999999999999999987555666666
No 44
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=76.64 E-value=6.3 Score=29.69 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=30.7
Q ss_pred eecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 51 YVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 51 YvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
..+|.+..+.|+.+.+..+|+.++.+..|.......|-|
T Consensus 27 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~ 65 (172)
T 3u30_A 27 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65 (172)
T ss_dssp ETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 345777789999999999999999999887444455555
No 45
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=76.43 E-value=5.7 Score=28.26 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=30.8
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 44 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 4567789999999999999999999987555666666
No 46
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=76.35 E-value=15 Score=26.24 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=34.1
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
++...|++..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~ 121 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE
Confidence 45567889999999999999999999999987555666666
No 47
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=74.77 E-value=6.6 Score=25.75 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=31.2
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHH---hCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKL---AGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l---~g~~~~~~~lKY 89 (173)
++..+|.+..+.|+.+.+..+|+.++++. .|.......|-|
T Consensus 10 vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~ 53 (85)
T 2wyq_A 10 LKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY 53 (85)
T ss_dssp EEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE
T ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE
Confidence 34446778889999999999999999997 555444556655
No 48
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.65 E-value=10 Score=26.44 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=30.3
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|++..|.|+.+.+..+|+.++++..|.......|-|
T Consensus 20 ~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (102)
T 1v5o_A 20 TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY 56 (102)
T ss_dssp CCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 4577789999999999999999999997545555555
No 49
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=74.54 E-value=6.6 Score=27.26 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=31.5
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|.+..+.|.++.++.+|+.++++..|.......|-|
T Consensus 30 ~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 30 DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 4677789999999999999999999998655667766
No 50
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=73.92 E-value=1.4 Score=30.41 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=33.1
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEeecCC
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQLPN 93 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPg 93 (173)
|--.|-.| |.|+.+.++.+|..++.+.++......++++..|.
T Consensus 10 rs~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p 52 (80)
T 2pjh_A 10 QSPDGVKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYINRNK 52 (80)
T ss_dssp ECSSEEEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG
T ss_pred ECCCCCEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCC
Confidence 34456555 45999999999999999999875556677777765
No 51
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=73.91 E-value=4.9 Score=28.36 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=29.7
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 32 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 68 (106)
T 1ttn_A 32 TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF 68 (106)
T ss_dssp TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE
Confidence 4556668999999999999999999987555566666
No 52
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=73.66 E-value=6 Score=28.29 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=30.3
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|.+..+.|+.+.+..+|+.++.+..|.......|-|
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 4567778999999999999999999987545556655
No 53
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=73.20 E-value=5.8 Score=28.64 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=35.3
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.+...|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 14 vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 54 (114)
T 2kdi_A 14 AKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW 54 (114)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 56678999999999999999999999999998555666766
No 54
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=72.45 E-value=15 Score=27.51 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=33.5
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
++-..|.+..+.|+.+.+..+|+.++.+..|.......|-|
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 141 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 141 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE
Confidence 34567899999999999999999999999987544555655
No 55
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=71.69 E-value=9.2 Score=24.70 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=30.0
Q ss_pred ecCce-EEEE-EcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 52 VGGDT-HIIS-VHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 52 vGGeT-RIv~-V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
..|.+ +-+. |+.+.+..+|+.++++..|.......|-|
T Consensus 10 ~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 10 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 34555 4688 99999999999999999997555566666
No 56
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=71.08 E-value=8.1 Score=26.85 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=28.1
Q ss_pred eEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 56 THIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 56 TRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+.-+.|+.+.+..+|+.++++..|.......|-|
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 59 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY 59 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 6678999999999999999999987545555655
No 57
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=70.61 E-value=4 Score=28.98 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=33.8
Q ss_pred eeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
++..+|.+..|.|+.+.+..+|+.++.+..|.......|-|
T Consensus 6 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 46 (106)
T 3m62_B 6 FKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY 46 (106)
T ss_dssp EECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 45567899999999999999999999999987545556655
No 58
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=69.35 E-value=7.1 Score=26.73 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=24.5
Q ss_pred cCceEEE-EEcCCCChHHHHHhHHHHhCCC
Q 045227 53 GGDTHII-SVHRSSTFLALQTKPLKLAGMA 81 (173)
Q Consensus 53 GGeTRIv-~V~Rsisf~eL~~kLs~l~g~~ 81 (173)
+|.++-| .|+.+.+..+|+.++++..|..
T Consensus 15 ~g~~~~i~~v~~~~TV~~lK~~I~~~~gip 44 (90)
T 1v5t_A 15 GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL 44 (90)
T ss_dssp TTEEEEECSCCSSSBHHHHHHHHHHHTCCC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 4555667 8999999999999999999873
No 59
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=68.76 E-value=11 Score=28.62 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=41.4
Q ss_pred eeeec--CceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEeecCCCC-eeeecChHHHHHHHHHHHHHhhcccccccc
Q 045227 49 LRYVG--GDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQLPNGE-LISVTSDEDVENMMAEYDRILGSALQDDVQ 125 (173)
Q Consensus 49 LrYvG--GeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgED-LISVssDeDL~~MmeEYdrl~~~~~~~~~~ 125 (173)
|||+| |.||+|...- .|.+...+.-+.+|.. .+-...-..-.+. +.-+++|+ ++.++..
T Consensus 3 LrFIacnGQTRaVq~~~--~y~~~L~~ALkKF~le-dpskw~Vcvtqssr~~~it~e~--------f~~icr~------- 64 (110)
T 1k8r_B 3 LRFIACNGQTRAVQSRG--DYQKTLAIALKKFSLE-DASKFIVCVSQSSRIKLITEEE--------FKQICFN------- 64 (110)
T ss_dssp EEEECSTTCEEEEECCS--CHHHHHHHHHHHHTCC-CTTSEEEEEECSSSEEECCCC-----------------------
T ss_pred eEEeecCCceEEeeehh--hHHHHHHHHHHHcCCC-ChhHeEEEEecCceEEEecHhH--------HHHHHhC-------
Confidence 67776 8999987654 4556666666667752 2222222334445 66666654 4445544
Q ss_pred cccCCCCceeEEEEecCCCcc-hh
Q 045227 126 DLTSSAAGTIRLFLFNKRGIV-SF 148 (173)
Q Consensus 126 ~~~s~~~~rlRvFLFp~~~~~-s~ 148 (173)
++.|.|=|+.|-+.+... +|
T Consensus 65 ---~srPEReRLIl~~K~~p~psf 85 (110)
T 1k8r_B 65 ---SSSPERDRLIIVPKEKPCPSF 85 (110)
T ss_dssp --------CCCEEEEESSSCCCCH
T ss_pred ---CCCcchheeEEecCCCCCCCH
Confidence 467899999999887665 44
No 60
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.36 E-value=8.5 Score=26.91 Aligned_cols=29 Identities=10% Similarity=0.314 Sum_probs=24.6
Q ss_pred cCceE-EEEEcCCCChHHHHHhHHHHhCCC
Q 045227 53 GGDTH-IISVHRSSTFLALQTKPLKLAGMA 81 (173)
Q Consensus 53 GGeTR-Iv~V~Rsisf~eL~~kLs~l~g~~ 81 (173)
+|+++ -|.|+.+.+..+|+.++++..|..
T Consensus 15 ~g~~~~~l~v~~~~TV~~lK~~I~~~tgip 44 (96)
T 1wgg_A 15 GKEKFEGVELNTDEPPMVFKAQLFALTGVQ 44 (96)
T ss_dssp TTEEEEEEEEESSSCHHHHHHHHHHHTCCC
T ss_pred CCEEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 45566 489999999999999999999873
No 61
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.87 E-value=10 Score=26.50 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=27.5
Q ss_pred EEEEcCCCChHHHHHhHHHHhCCCCcceEEEee
Q 045227 58 IISVHRSSTFLALQTKPLKLAGMAESDISVKYQ 90 (173)
Q Consensus 58 Iv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQ 90 (173)
.+.|+.+.+..+|+.++++..|.......|-|.
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 578999999999999999999975556667663
No 62
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=67.54 E-value=9.8 Score=27.16 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=32.6
Q ss_pred ecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 52 VGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 52 vGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
..|.+.-+.|+.+.+..+|+.++.+..|.......|-|
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 47889999999999999999999999987555666666
No 63
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=64.67 E-value=13 Score=25.46 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.3
Q ss_pred CceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEee
Q 045227 54 GDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQ 90 (173)
Q Consensus 54 GeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQ 90 (173)
|.+..+.|+.+.+..+|+.++++..|.......|-|.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 4566789999999999999999999975556666664
No 64
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.62 E-value=13 Score=25.42 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=30.6
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHH---hCCCCcceEEEe
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKL---AGMAESDISVKY 89 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l---~g~~~~~~~lKY 89 (173)
+..+|.+..+.|+.+.+..+|+.++++. .|.......|-|
T Consensus 6 k~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~ 48 (95)
T 1uel_A 6 KTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY 48 (95)
T ss_dssp EETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE
T ss_pred EeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE
Confidence 3446778889999999999999999998 455334555555
No 65
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=64.30 E-value=14 Score=25.87 Aligned_cols=35 Identities=9% Similarity=0.111 Sum_probs=28.6
Q ss_pred ceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 55 DTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 55 eTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.+.-+.|+.+.+..+|+.++++..|.......|-|
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 34568999999999999999999997555666666
No 66
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=64.22 E-value=9 Score=26.05 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 54 GDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 54 GeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
|.+.-+.|+.+.+..+|+.++++..|.......|-|
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 61 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF 61 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 344567899999999999999999887444445544
No 67
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=64.12 E-value=11 Score=26.89 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=30.7
Q ss_pred eecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 51 YVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 51 YvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
-.+|.+.-+.|+.+.+..+|+.++++..|.......|-|
T Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~ 45 (152)
T 3b08_A 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (152)
T ss_dssp ETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred eCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 345778889999999999999999998887444455555
No 68
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=63.29 E-value=33 Score=25.12 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=33.6
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+...|.+..+.|+.+.+..+|+.++.+..|.......|-|
T Consensus 87 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 126 (159)
T 3rt3_B 87 RNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126 (159)
T ss_dssp ECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE
Confidence 4457899999999999999999999999998555566666
No 69
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=61.90 E-value=4.6 Score=28.56 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=30.0
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+|.+.-+.|+.+.+..+|+.++++..|.......|-|
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 72 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 72 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 7777788999999999999999999987444445544
No 70
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=61.69 E-value=17 Score=26.76 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=28.4
Q ss_pred eEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEee
Q 045227 56 THIISVHRSSTFLALQTKPLKLAGMAESDISVKYQ 90 (173)
Q Consensus 56 TRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQ 90 (173)
+.-+.|+.+.+..+|+.++.+..|.......|-|+
T Consensus 43 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 43 KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 45678999999999999999999975556666663
No 71
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=59.54 E-value=15 Score=26.69 Aligned_cols=39 Identities=8% Similarity=-0.037 Sum_probs=33.9
Q ss_pred eecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 51 YVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 51 YvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
..+|.+.-|.|..+-+-.+|+.++++..|.......|+|
T Consensus 28 ~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif 66 (93)
T 3plu_A 28 DRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK 66 (93)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe
Confidence 347888889999999999999999999998666778887
No 72
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=59.50 E-value=13 Score=27.16 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=31.3
Q ss_pred CceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEee
Q 045227 54 GDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQ 90 (173)
Q Consensus 54 GeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQ 90 (173)
|.+..|.|+.+.+..+|+.++++..|.......|.|+
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 5666699999999999999999999986566777775
No 73
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=58.80 E-value=14 Score=26.09 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=30.3
Q ss_pred cCceEEEEEcC-CCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHR-SSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~R-sisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+|.+.-+.|+. +.+..+|+.++++..|.......|-|
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~ 76 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG 76 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 57777899997 99999999999999987544555555
No 74
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=63.00 E-value=2.1 Score=27.72 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=30.3
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+..+|++..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 6 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 45 (76)
T 3b1l_X 6 RFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF 45 (76)
Confidence 3456888889999999999999999998876333334433
No 75
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=56.50 E-value=18 Score=25.33 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=26.9
Q ss_pred EEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 58 IISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 58 Iv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.+.|+.+.+..+|+.++++..|.......|-|
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 66 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 66 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 57899999999999999999997555566666
No 76
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=56.33 E-value=29 Score=22.80 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=32.1
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|++--+.|.++.++..|+.+.++..|.....+.|.|
T Consensus 10 ~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 46 (72)
T 1wm3_A 10 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 46 (72)
T ss_dssp TSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 5677789999999999999999999998666777777
No 77
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=54.60 E-value=31 Score=25.22 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=32.9
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEE-e
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVK-Y 89 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lK-Y 89 (173)
+..+|.+..+.|+.+.+-.+|+.++.+..|.....-.|- |
T Consensus 8 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~ 48 (159)
T 3rt3_B 8 KMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVH 48 (159)
T ss_dssp EETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred EECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEc
Confidence 445788999999999999999999999999754445565 5
No 78
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.78 E-value=26 Score=26.61 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=30.9
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEee
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQ 90 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQ 90 (173)
+|+...|.|+.+.+..+|+.++++.++......+|-|.
T Consensus 25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 25 VGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp TCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence 45666788999999999999999999875556667664
No 79
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=53.42 E-value=35 Score=22.92 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=30.8
Q ss_pred cC-ceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GG-DTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GG-eTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.| +..-+.|.++.++..|+.+.++..|.....+.|.|
T Consensus 16 ~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f 53 (79)
T 3a4r_A 16 EKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF 53 (79)
T ss_dssp STTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 45 46678999999999999999999998666677776
No 80
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=52.17 E-value=23 Score=27.19 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=32.8
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+-..|.+..+.|+.+.+..+|+.++.+..|.......|-|
T Consensus 6 k~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (169)
T 3l0w_B 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (169)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4457889999999999999999999999987545555555
No 81
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=50.94 E-value=34 Score=24.96 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=31.2
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|.+..+.|.++.+|..|+.+.++..|.....+.|.|
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F 75 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 75 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 3566778999999999999999999998666777776
No 82
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=48.63 E-value=42 Score=23.46 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=31.6
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|..--+.|.++.+|..|+.+.++..|.....+.|.|
T Consensus 14 ~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F 50 (91)
T 2io0_B 14 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 50 (91)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 4667788999999999999999999998666777776
No 83
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=48.33 E-value=32 Score=23.20 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=25.6
Q ss_pred eEEEEEcCCCChHHHHHhHHHHh--CCCCcceEEEe
Q 045227 56 THIISVHRSSTFLALQTKPLKLA--GMAESDISVKY 89 (173)
Q Consensus 56 TRIv~V~Rsisf~eL~~kLs~l~--g~~~~~~~lKY 89 (173)
+.-|.|+.+.+..+|+.++++.. |.......|-|
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~ 56 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY 56 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE
Confidence 55567779999999999999988 66434445555
No 84
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=47.10 E-value=54 Score=22.99 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=27.7
Q ss_pred eEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEee
Q 045227 56 THIISVHRSSTFLALQTKPLKLAGMAESDISVKYQ 90 (173)
Q Consensus 56 TRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQ 90 (173)
+.-+.|+.+.+..+|+.|+.+..|.......|-|.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 45578999999999999999999985445555543
No 85
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=47.10 E-value=33 Score=24.31 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=27.3
Q ss_pred eEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 56 THIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 56 TRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+.-+.|+.+++..+|+.||.+..|.......|-|
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~ 61 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL 61 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEE
Confidence 4457899999999999999999998544555555
No 86
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.66 E-value=29 Score=24.39 Aligned_cols=41 Identities=10% Similarity=0.188 Sum_probs=29.5
Q ss_pred eeeecC---ceEEEEEcC---------CCChHHHHHhHHHHh--CCCCcc-eEEEe
Q 045227 49 LRYVGG---DTHIISVHR---------SSTFLALQTKPLKLA--GMAESD-ISVKY 89 (173)
Q Consensus 49 LrYvGG---eTRIv~V~R---------sisf~eL~~kLs~l~--g~~~~~-~~lKY 89 (173)
++..+| .+.-|.|+. +.+..+|+.++.+.. |..... ..|-|
T Consensus 17 Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~ 72 (107)
T 1x1m_A 17 VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY 72 (107)
T ss_dssp EEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE
T ss_pred EEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE
Confidence 444566 677788554 599999999999999 775445 55655
No 87
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=44.56 E-value=47 Score=23.07 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=30.4
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|..--+.|.++.+|..|+.+.++..|.....+.|.|
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 62 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE
Confidence 3455568999999999999999999998666677766
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=43.51 E-value=50 Score=23.12 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=31.2
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|++--+.|.++.++..|+.+.++..|.....+.|.|
T Consensus 16 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F 52 (94)
T 2io1_B 16 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 52 (94)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 4666778999999999999999999998666777766
No 89
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=40.82 E-value=7.1 Score=30.21 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.3
Q ss_pred cCCCCCcCCCCCCCCCCCCCCCCCceEEEEee
Q 045227 4 VDPSTQETGSGDSVASSPQHGLHLKSVRFICY 35 (173)
Q Consensus 4 ~~p~~~~~~~~d~~~ssp~s~~~~~kVKlmCS 35 (173)
++|+.+-...|++..+.| -||||+|+
T Consensus 6 l~P~~Ls~~FP~aS~s~p------~kVR~L~Q 31 (123)
T 3kf8_B 6 LIPSNIPQEFPEASISNP------ERLRILAQ 31 (123)
T ss_dssp SCGGGHHHHCTTCBTTBC------EEEEEEEE
T ss_pred EChHHhhhhCccccccCC------ceEEEEEE
Confidence 688888888999887777 79999996
No 90
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=40.70 E-value=26 Score=24.14 Aligned_cols=33 Identities=3% Similarity=-0.041 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHhHHHHhCCCCcceEEEee
Q 045227 58 IISVHRSSTFLALQTKPLKLAGMAESDISVKYQ 90 (173)
Q Consensus 58 Iv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQ 90 (173)
=+.++.+++-.+|+.|+.+.+|.......|-|.
T Consensus 18 E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 18 EKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 378999999999999999999986666777765
No 91
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.00 E-value=46 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=25.7
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCC
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGM 80 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~ 80 (173)
||.+..|.|+.+.+-.+|+.++++..|.
T Consensus 28 ~~~~~~lev~~~~TV~~lK~kI~~k~gi 55 (100)
T 1wju_A 28 KDRKNLLETRLHITGRELRSKIAETFGL 55 (100)
T ss_dssp CSSSEEEEEESSSBHHHHHHHHHHHTTC
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHHHHCc
Confidence 4678899999999999999999999987
No 92
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=38.72 E-value=44 Score=24.17 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=27.6
Q ss_pred eEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 56 THIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 56 TRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
..-+.|+.+.+..+|+.||.+.+|.......|-|
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~ 52 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQL 52 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 3457899999999999999999998555555655
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.57 E-value=52 Score=23.66 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=30.3
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|...-+.|.++.+|..|+.+.++..|.....+.|.|
T Consensus 33 ~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F 69 (104)
T 1wz0_A 33 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 69 (104)
T ss_dssp SSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES
T ss_pred CCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 3455668999999999999999999998666666766
No 94
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.56 E-value=33 Score=23.52 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=26.6
Q ss_pred eEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 56 THIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 56 TRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
..-+.|+.+.+..+|+.|+.+..|.......|-|
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 3447899999999999999999997544445544
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=37.40 E-value=61 Score=23.66 Aligned_cols=36 Identities=11% Similarity=0.262 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 54 GDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 54 GeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
|..-.+.|.++.+|..|+.+.++..|.....+.|.|
T Consensus 36 g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF 71 (110)
T 2k8h_A 36 GAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF 71 (110)
T ss_dssp SCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 445568899999999999999999998666666666
No 96
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.91 E-value=56 Score=23.35 Aligned_cols=34 Identities=6% Similarity=-0.027 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCChHHHHHhHHHHhCCCCcceEE
Q 045227 54 GDTHIISVHRSSTFLALQTKPLKLAGMAESDISV 87 (173)
Q Consensus 54 GeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~l 87 (173)
|++..|.|+.+-+..+|++++.+..|.....-.|
T Consensus 18 Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkL 51 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQIPVSKMLL 51 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCE
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEE
Confidence 5666789999999999999999999974333334
No 97
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=35.65 E-value=7.8 Score=28.29 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=0.0
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCC
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMA 81 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~ 81 (173)
+..+|.+.-+.|+.+.+..+|+.++.+..|..
T Consensus 6 k~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 37 (128)
T 3u5e_m 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37 (128)
T ss_dssp --------------------------------
T ss_pred EeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC
Confidence 44578889999999999999999999988763
No 98
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.11 E-value=32 Score=23.21 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=26.3
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
.|.+..+.|+.+.+..+|+.++.+.. .....|-|
T Consensus 16 ~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~ 49 (95)
T 1wia_A 16 NDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY 49 (95)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE
Confidence 45667789999999999999998765 24555655
No 99
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=33.89 E-value=51 Score=28.32 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=33.1
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+-..|.+..+.|+.+.+..+|+.++++..|.......|-|
T Consensus 239 Ktl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~ 278 (307)
T 3ai5_A 239 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 278 (307)
T ss_dssp ECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe
Confidence 3446788889999999999999999999997555666666
No 100
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=33.89 E-value=1.1e+02 Score=21.90 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=37.0
Q ss_pred CCCCCCCCCCCCceEEEEeeeCCEEEecCCCCceeeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 16 SVASSPQHGLHLKSVRFICYFGGEIRLGPNDNKLRYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 16 ~~~ssp~s~~~~~kVKlmCSyGGrIlPRp~Dg~LrYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
|.-++|.....+.+|++-+.- .|| .+...+.|.++.+|..|+..-++..|.....+.|.|
T Consensus 12 ~~~~~~~~~~~~~~I~LkV~~--------~dg------~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F 71 (97)
T 2jxx_A 12 SGLVPRGSTETSQQLQLRVQG--------KEK------HQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF 71 (97)
T ss_dssp --------CCSCSEEEEEEEE--------SSS------SCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE
T ss_pred cCcCCCCCCCCCCeEEEEEEc--------CCC------CEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 444555555666777765531 111 134457899999999999999999888666677766
No 101
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=32.36 E-value=38 Score=23.87 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=22.9
Q ss_pred cCceEEEEEc-CCCChHHHHHhHHHHhCCC
Q 045227 53 GGDTHIISVH-RSSTFLALQTKPLKLAGMA 81 (173)
Q Consensus 53 GGeTRIv~V~-Rsisf~eL~~kLs~l~g~~ 81 (173)
.|..| |.|+ .+.++.+|+.|+.+.+|..
T Consensus 16 ~G~~~-v~v~~~~~Tv~~LK~kI~~~~gip 44 (107)
T 1wf9_A 16 DGLER-VSVDGPHITVSQLKTLIQDQLQIP 44 (107)
T ss_dssp SCEEE-EEECCTTSBHHHHHHHHHHHSCCC
T ss_pred CCCEE-EEECCCCCcHHHHHHHHHHHhCcC
Confidence 34443 6799 9999999999999999863
No 102
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=32.28 E-value=1.2e+02 Score=25.73 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=67.7
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCC-cceEEEeecCC-CCeeeecChHHHHHHHHHHHHHhhcccccccccccCC
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAE-SDISVKYQLPN-GELISVTSDEDVENMMAEYDRILGSALQDDVQDLTSS 130 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~-~~~~lKYQLPg-EDLISVssDeDL~~MmeEYdrl~~~~~~~~~~~~~s~ 130 (173)
||.++.+.++.+.+-.|+...+.+.+|... .-+.|.|.-.. ++..=+.-++=|...+++|.+.... .+
T Consensus 20 ~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~~~k~~~~~~~----------~~ 89 (375)
T 2al6_A 20 TTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAHPP----------EE 89 (375)
T ss_dssp GGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHHHHHHHTTSCG----------GG
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhhhhhhhcccCC----------Cc
Confidence 455999999999999999999999998732 35789887654 3355566666777777777653321 11
Q ss_pred CCceeEEEEecCCCc-------ch---hhHHHHHHHhccc
Q 045227 131 AAGTIRLFLFNKRGI-------VS---FFRHWINKILSCF 160 (173)
Q Consensus 131 ~~~rlRvFLFp~~~~-------~s---~~~~~~~~~l~~~ 160 (173)
-.-.+|+..||.+.. +. ++.|.-.|+|++.
T Consensus 90 ~~l~fRvrF~~~~~~~l~~~D~~t~~~~y~Q~r~Dil~g~ 129 (375)
T 2al6_A 90 WKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEI 129 (375)
T ss_dssp EEEEEEECCCCTTHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEEecCCHHHhhhcCHHHHHHHHHHHHHHHHcCC
Confidence 235788888887642 11 3567777777763
No 103
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=29.02 E-value=1e+02 Score=23.85 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.8
Q ss_pred eEEEEEcCCCChHHHHHhHHHHhCCC
Q 045227 56 THIISVHRSSTFLALQTKPLKLAGMA 81 (173)
Q Consensus 56 TRIv~V~Rsisf~eL~~kLs~l~g~~ 81 (173)
.|-|.|+.+++|.+|-.-|-..+|..
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~ 48 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWE 48 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 48999999999999999999999975
No 104
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=28.53 E-value=25 Score=25.63 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=34.1
Q ss_pred cCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEeecCCCC--eeeecChHHHHHH
Q 045227 53 GGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQLPNGE--LISVTSDEDVENM 108 (173)
Q Consensus 53 GGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQLPgED--LISVssDeDL~~M 108 (173)
|+..+.|.|+.++++++|+..|.+--..-...-+|.+.+=++. |. ...-.-|+.+
T Consensus 3 g~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LY-mq~pp~Lee~ 59 (98)
T 1y8x_B 3 SQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLY-MQSVTSIEER 59 (98)
T ss_dssp --CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEE-CSSCHHHHHH
T ss_pred CCCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEE-EeCcHHHHHH
Confidence 6778889999999999999999984222113445655543333 54 4444445544
No 105
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=27.14 E-value=64 Score=22.27 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=30.4
Q ss_pred eeeecCceEEEEEc--CCCChHHHHHhH-HHHhCCCCcceEEEe
Q 045227 49 LRYVGGDTHIISVH--RSSTFLALQTKP-LKLAGMAESDISVKY 89 (173)
Q Consensus 49 LrYvGGeTRIv~V~--Rsisf~eL~~kL-s~l~g~~~~~~~lKY 89 (173)
++-..|.+.-+.|+ .+.+-.+|+.++ ++..|.......|-|
T Consensus 6 VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~ 49 (87)
T 2lxa_A 6 LKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL 49 (87)
T ss_dssp EEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEE
T ss_pred EEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEE
Confidence 34567888888766 999999999999 887776434444444
No 106
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=26.58 E-value=14 Score=29.94 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=0.0
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe---ecCCCCeeeecChHHHHHHH
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY---QLPNGELISVTSDEDVENMM 109 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY---QLPgEDLISVssDeDL~~Mm 109 (173)
+-..|.|..|.|+.+.+..+|+.++.+..|.......|=| +|-++..++ +++..||+
T Consensus 6 KtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs---~~STLhLv 65 (189)
T 2xzm_9 6 KTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT---DDVTYYLS 65 (189)
T ss_dssp ---------------------------------------------------------------
T ss_pred EcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc---CCCEEEEE
Confidence 3456899999999999999999999998887444445544 343333334 55555555
No 107
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=24.98 E-value=1.5e+02 Score=21.92 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 54 GDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 54 GeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
|..--+.|.++.+|..|+...++..|.....+.|.|
T Consensus 50 g~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF 85 (115)
T 3kyd_D 50 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 85 (115)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE
T ss_pred CCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE
Confidence 444567899999999999999999998666777766
No 108
>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.96 E-value=16 Score=24.98 Aligned_cols=39 Identities=13% Similarity=0.361 Sum_probs=25.8
Q ss_pred hHHHHHhHHHHhCCCCcceEEEeecCCCC---eeeecChHHHHHHHHH
Q 045227 67 FLALQTKPLKLAGMAESDISVKYQLPNGE---LISVTSDEDVENMMAE 111 (173)
Q Consensus 67 f~eL~~kLs~l~g~~~~~~~lKYQLPgED---LISVssDeDL~~MmeE 111 (173)
+.|.-.|+.++-.. |+|-+|++| |+-=.+.++|+.|+.-
T Consensus 5 LTeVEnRl~qLE~l------l~~lfP~~d~D~ll~~~~l~~ir~~L~~ 46 (57)
T 1hbw_A 5 LTEVESRLERLEQL------FLLIFPREDLDMILKMDSLRDIEALLTG 46 (57)
T ss_dssp CHHHHHHHHHHHHH------CSSSSSSSCCCHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHCCcccHHHHHcCCChHHHHHHHHH
Confidence 34556667666543 778899999 5555556677777654
No 109
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=24.27 E-value=16 Score=28.07 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=0.0
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEe
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKY 89 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKY 89 (173)
+..+|.+..|.|+.+.+..+|+.++++..|.......|-|
T Consensus 6 K~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (152)
T 3u5c_f 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (152)
T ss_dssp ----------------------------------------
T ss_pred EeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 3456888899999999999999999998886433334433
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=23.13 E-value=77 Score=22.95 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=33.9
Q ss_pred eeecCceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEee
Q 045227 50 RYVGGDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQ 90 (173)
Q Consensus 50 rYvGGeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQ 90 (173)
-|-+|....|.|..+.++.++..+--+.+|.....+.|||+
T Consensus 15 l~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~ 55 (90)
T 2al3_A 15 LAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ 55 (90)
T ss_dssp ECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET
T ss_pred EcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeC
Confidence 34467888899999999999999988889986667788775
No 111
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=22.96 E-value=1.4e+02 Score=20.66 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=30.3
Q ss_pred HHHHHhHHH---HhCCCCcceEEEeecCCCCeeeecChHHHHHHHHHHHHHh
Q 045227 68 LALQTKPLK---LAGMAESDISVKYQLPNGELISVTSDEDVENMMAEYDRIL 116 (173)
Q Consensus 68 ~eL~~kLs~---l~g~~~~~~~lKYQLPgEDLISVssDeDL~~MmeEYdrl~ 116 (173)
..|+.|..| ||+. +++|=-.=|.+.|..-.+. +++.+++.|....
T Consensus 25 ~GL~KKA~ELsvLCda---eV~livfs~~gk~~~~~s~-~~~~il~ry~~~~ 72 (77)
T 1egw_A 25 FGLMKKAYELSVLCDC---EIALIIFNSSNKLFQYAST-DMDKVLLKYTEYN 72 (77)
T ss_dssp HHHHHHHHHHHHHTTC---EEEEEEECTTCCEEEEESS-CHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccCC---eEEEEEECCCCCEeeCCCC-CHHHHHHHHHhcc
Confidence 356555444 5665 6776666677776666554 6999999998764
No 112
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=22.58 E-value=1.6e+02 Score=21.10 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=31.3
Q ss_pred HHHHhHHH---HhCCCCcceEEEeecCCCCeeeecChHHHHHHHHHHHHHh
Q 045227 69 ALQTKPLK---LAGMAESDISVKYQLPNGELISVTSDEDVENMMAEYDRIL 116 (173)
Q Consensus 69 eL~~kLs~---l~g~~~~~~~lKYQLPgEDLISVssDeDL~~MmeEYdrl~ 116 (173)
.|+.|..| ||+. +++|=..=|.+.|..-.+ .+++.|++.|.+..
T Consensus 26 GL~KKA~ELsvLCda---~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~ 72 (90)
T 3p57_A 26 GLMKKAYELSVLCDC---EIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYN 72 (90)
T ss_dssp HHHHHHHHHHHHHTC---EEEEEEECTTCCEEEEES-SCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhccCC---ceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcC
Confidence 45555444 6775 677666668777766655 57999999998864
No 113
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=21.88 E-value=2e+02 Score=22.63 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=29.3
Q ss_pred EEEEEcCCCChHHHHHhHHHHhCCCCcceEEEee
Q 045227 57 HIISVHRSSTFLALQTKPLKLAGMAESDISVKYQ 90 (173)
Q Consensus 57 RIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQ 90 (173)
.-+.|.|+.+|.-|+...++..|.....+.|.|.
T Consensus 33 v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fd 66 (209)
T 3uf8_A 33 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 66 (209)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEET
T ss_pred EEEEEeeCCHHHHHHHHHHHhhCCChheEEEEEC
Confidence 3478999999999999999999987778888773
No 114
>3ady_A DOTD; 3-layer(BAB) sandwich, MTH1598-like, proton transport; 2.00A {Legionella pneumophila}
Probab=21.09 E-value=1.2e+02 Score=23.69 Aligned_cols=68 Identities=22% Similarity=0.142 Sum_probs=40.7
Q ss_pred eEEEEeeeCCEEEecCCCCceeeec--CceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEEeec--CCCC-eeeecC
Q 045227 29 SVRFICYFGGEIRLGPNDNKLRYVG--GDTHIISVHRSSTFLALQTKPLKLAGMAESDISVKYQL--PNGE-LISVTS 101 (173)
Q Consensus 29 kVKlmCSyGGrIlPRp~Dg~LrYvG--GeTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lKYQL--PgED-LISVss 101 (173)
..+.|--++=-+.|...|+.+++-+ +.+|.|+++=.=...+|..+|++..|. .++|.= |.-+ +|.|..
T Consensus 36 s~~~La~~e~a~~~p~~~~~~~~P~~~~~~~~vs~dW~Gp~eelL~~LA~~~Gy-----~f~v~G~rpalPv~I~V~~ 108 (148)
T 3ady_A 36 SMLEMAKVEKVITPPSKDNTLTIPNAYNLQARASVDWSGPIEELTARIAKAAHF-----RFRVLGKSPSVPVLISIST 108 (148)
T ss_dssp ---------------CCCCTTTSCCCGGGGCEEEEEEEEEHHHHHHHHHHHTTC-----EEEEESCCCSSCCEEEEEE
T ss_pred HHHHHHHhhcccCCcccCCcCcCCchhccccEEEEEeeCCHHHHHHHHHHHcCc-----eEEeccCCCCCCceEEEcc
Confidence 3445555555555555566777777 899999998888899999999999986 555533 3333 788776
No 115
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=20.77 E-value=1.1e+02 Score=22.90 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCChHHHHHhHHHHhCCCCcceEEE
Q 045227 55 DTHIISVHRSSTFLALQTKPLKLAGMAESDISVK 88 (173)
Q Consensus 55 eTRIv~V~Rsisf~eL~~kLs~l~g~~~~~~~lK 88 (173)
..+-+.|.++.+|.+|+..+++.+|.....+.|=
T Consensus 56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW 89 (130)
T 2kvr_A 56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 89 (130)
T ss_dssp SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence 3567899999999999999999999744444443
Done!