BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045228
         (146 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SZI|A Chain A, Crystal Structure Of The C-Terminus Of Tip47
          Length = 247

 Score = 31.6 bits (70), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 12  GVMGSLATYTALARPAGENLVQYVIDHPTAVWFVGSLFAALT 53
           GV+       A AR A +N V+YV  +  A+W VG     +T
Sbjct: 199 GVLAQTRERIARAREALDNTVEYVAQNTPAMWLVGPFAPGIT 240


>pdb|1WNI|A Chain A, Crystal Structure Of H2-Proteinase
          Length = 201

 Score = 30.8 bits (68), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 25/102 (24%)

Query: 54  GLVFKEGLCYGKLEAGILTFIIPSVL---------LGHLSGL-MDDGVKLSLLGSWMVLF 103
           GL +K+G+C  KL  G++    P+V          LGH  G+  DD  K       M   
Sbjct: 109 GLAYKKGMCNPKLSVGLVQDYSPNVFMVAVTMTHELGHNLGMEHDDKDKCKCEACIM--- 165

Query: 104 VIFAGRKFTQPIKDDIGDKSVFMFNALSEDEKKALIEKLEQQ 145
                        D I DK   +F+  S+++ +  + K   Q
Sbjct: 166 ------------SDVISDKPSKLFSDCSKNDYQTFLTKYNPQ 195


>pdb|2FZV|A Chain A, Crystal Structure Of An Apo Form Of A Flavin-Binding
           Protein From Shigella Flexneri
 pdb|2FZV|B Chain B, Crystal Structure Of An Apo Form Of A Flavin-Binding
           Protein From Shigella Flexneri
 pdb|2FZV|C Chain C, Crystal Structure Of An Apo Form Of A Flavin-Binding
           Protein From Shigella Flexneri
 pdb|2FZV|D Chain D, Crystal Structure Of An Apo Form Of A Flavin-Binding
           Protein From Shigella Flexneri
          Length = 279

 Score = 29.6 bits (65), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 16/70 (22%)

Query: 93  LSLLGSWMVLFVI--------------FAGRKFTQPIKDDIGD--KSVFMFNALSEDEKK 136
           L LLG WM +F I               AGR    P  D I D  + +  F AL    ++
Sbjct: 182 LRLLGRWMRMFTIPNQSSIAKAFQEFDAAGRMKPSPYYDRIADVMEELVRFTALVRPHRE 241

Query: 137 ALIEKLEQQN 146
           AL ++  ++ 
Sbjct: 242 ALTDRYSERK 251


>pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania
           Major
 pdb|1EZR|B Chain B, Crystal Structure Of Nucleoside Hydrolase From Leishmania
           Major
 pdb|1EZR|C Chain C, Crystal Structure Of Nucleoside Hydrolase From Leishmania
           Major
 pdb|1EZR|D Chain D, Crystal Structure Of Nucleoside Hydrolase From Leishmania
           Major
          Length = 314

 Score = 25.8 bits (55), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 9   WVLGVMGSLATYTALARPAGENLVQYVIDHPTAVWFVGSLFAALTGLVFKEGLCYGKLE- 67
           W + ++G   T+ ALA PA +  V+ V   P A  F+  +    T +  KE   YGK+  
Sbjct: 184 WNVTMVGLDLTHLALATPAVQKRVREVGTKPAA--FMLQILDFYTKVYEKEHDTYGKVHD 241

Query: 68  -AGILTFIIPSVL 79
              +   I P+V+
Sbjct: 242 PCAVAYVIDPTVM 254


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.141    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,242,064
Number of Sequences: 62578
Number of extensions: 164109
Number of successful extensions: 351
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 11
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)