Query 045228
Match_columns 146
No_of_seqs 96 out of 98
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 19:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sjd_D Golgi to ER traffic pro 64.5 2.8 9.5E-05 27.0 1.4 18 129-146 13-30 (46)
2 3zs9_C Golgi to ER traffic pro 64.1 3.1 0.00011 25.9 1.6 18 129-146 3-20 (38)
3 2o4a_A DNA-binding protein SAT 35.6 21 0.00072 25.3 2.3 29 113-141 48-83 (93)
4 1wiz_A DNA-binding protein SAT 33.3 25 0.00084 25.5 2.3 18 124-141 76-93 (101)
5 2rsg_A Collagen type IV alpha- 31.2 6.4 0.00022 25.2 -1.0 24 123-146 70-93 (94)
6 1v89_A Hypothetical protein KI 30.6 27 0.00093 22.5 2.1 25 120-144 85-109 (118)
7 3rcp_A Pleckstrin homology dom 29.1 26 0.00088 22.5 1.7 24 122-145 68-91 (103)
8 1x1g_A Pleckstrin 2; PH domain 29.1 26 0.00088 23.3 1.8 30 115-144 90-121 (129)
9 2i5f_A Pleckstrin; PH domain, 28.3 26 0.00089 22.4 1.6 24 121-144 83-106 (109)
10 1u5d_A SKAP55, SRC kinase-asso 27.6 30 0.001 21.8 1.8 24 121-144 79-102 (108)
11 1fgy_A GRP1; PH domain, signal 26.6 31 0.0011 22.6 1.8 23 122-144 95-117 (127)
12 2khu_A Immunoglobulin G-bindin 26.4 44 0.0015 24.7 2.7 24 121-146 69-92 (108)
13 3aj4_A Pleckstrin homology dom 26.1 30 0.001 22.5 1.6 30 116-145 78-109 (112)
14 3l9k_W Dynein intermediate cha 25.7 32 0.0011 21.0 1.6 11 130-140 1-11 (38)
15 2d9y_A Pleckstrin homology dom 25.6 32 0.0011 22.3 1.7 30 116-145 76-107 (117)
16 2rlo_A Centaurin-gamma 1; spli 25.1 28 0.00095 23.7 1.4 24 121-144 98-121 (128)
17 1hmj_A RPB5, protein (subunit 24.9 35 0.0012 23.6 1.9 16 127-142 12-27 (78)
18 2d9x_A Oxysterol binding prote 24.8 34 0.0012 22.8 1.8 30 115-144 70-101 (120)
19 3a1q_C Ubiquitin interaction m 24.1 49 0.0017 21.0 2.2 17 129-145 3-19 (45)
20 2d9v_A Pleckstrin homology dom 23.6 32 0.0011 23.6 1.5 24 121-144 88-111 (130)
21 3lfp_A CSP231I C protein; tran 23.4 56 0.0019 21.1 2.6 23 122-145 73-95 (98)
22 2dkp_A Pleckstrin homology dom 23.0 38 0.0013 22.4 1.7 24 121-144 93-116 (128)
23 1v5u_A SBF1, SET binding facto 22.7 39 0.0013 21.9 1.7 25 121-145 85-109 (117)
24 1x05_A Pleckstrin; PH domain, 22.3 41 0.0014 22.4 1.8 31 114-144 85-117 (129)
25 1pls_A Pleckstrin homology dom 22.2 40 0.0014 21.9 1.7 24 121-144 75-98 (113)
26 2l2l_A Transcriptional repress 21.3 54 0.0019 20.7 2.0 14 131-144 2-15 (43)
27 2yry_A Pleckstrin homology dom 20.9 40 0.0014 22.0 1.5 30 115-144 86-117 (122)
28 3cxb_B Pleckstrin homology dom 20.8 44 0.0015 22.4 1.7 24 121-144 75-98 (112)
29 1eik_A RNA polymerase subunit 20.7 42 0.0014 23.1 1.6 17 127-143 14-30 (77)
30 1r8j_A KAIA; circadian clock p 20.4 59 0.002 27.6 2.7 22 123-144 180-201 (289)
31 2rr9_C Putative uncharacterize 20.1 50 0.0017 21.0 1.7 16 130-145 1-16 (46)
No 1
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=64.50 E-value=2.8 Score=27.02 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 045228 129 ALSEDEKKALIEKLEQQN 146 (146)
Q Consensus 129 ~l~~~e~~~~~~~~~~~~ 146 (146)
.||++||++++.+++|+|
T Consensus 13 ~lsa~EkaRLrRERR~aK 30 (46)
T 3sjd_D 13 ELTEAEKRRLLRERRQKK 30 (46)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 689999999999888864
No 2
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=64.07 E-value=3.1 Score=25.85 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=14.8
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 045228 129 ALSEDEKKALIEKLEQQN 146 (146)
Q Consensus 129 ~l~~~e~~~~~~~~~~~~ 146 (146)
.||++||.++..+++|+|
T Consensus 3 els~~ekaRlrRERR~aK 20 (38)
T 3zs9_C 3 ELTEAEKRRLLRERRQKK 20 (38)
T ss_dssp -CCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 489999999999888764
No 3
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=35.63 E-value=21 Score=25.35 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=20.6
Q ss_pred CCC-CCCCCcc------hhhhhhcCCHHHHHHHHHH
Q 045228 113 QPI-KDDIGDK------SVFMFNALSEDEKKALIEK 141 (146)
Q Consensus 113 mPl-~~DIGDK------Svf~yl~l~~~e~~~~~~~ 141 (146)
.|- |.|-..+ ..|.++.|||+||..++++
T Consensus 48 ~Pkdpw~~l~~Gre~f~rM~nWL~l~e~eR~eil~~ 83 (93)
T 2o4a_A 48 KEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIYQD 83 (93)
T ss_dssp HCCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 355 5666632 2577899999999988764
No 4
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=33.26 E-value=25 Score=25.47 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.3
Q ss_pred hhhhhcCCHHHHHHHHHH
Q 045228 124 VFMFNALSEDEKKALIEK 141 (146)
Q Consensus 124 vf~yl~l~~~e~~~~~~~ 141 (146)
.|.++.|||+||..++++
T Consensus 76 M~nWL~l~e~eR~eIl~~ 93 (101)
T 1wiz_A 76 MQNFLNLPEVERDRIYQD 93 (101)
T ss_dssp HHHHTTSCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 478899999999988765
No 5
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=31.24 E-value=6.4 Score=25.19 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.4
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhcC
Q 045228 123 SVFMFNALSEDEKKALIEKLEQQN 146 (146)
Q Consensus 123 Svf~yl~l~~~e~~~~~~~~~~~~ 146 (146)
.+|.+-+-+++|++.|++.+++.+
T Consensus 70 r~~~l~A~s~~e~~~Wi~aLq~Ak 93 (94)
T 2rsg_A 70 SVWYLRAQDPDHRQQWIDAIEQHK 93 (94)
T ss_dssp EEEEEECCSSCCTHHHHHHHHHHC
T ss_pred eEEEEECCCHHHHHHHHHHHHhhc
Confidence 457788889999999999998864
No 6
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=30.64 E-value=27 Score=22.50 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.3
Q ss_pred CcchhhhhhcCCHHHHHHHHHHHHh
Q 045228 120 GDKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 120 GDKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
+++..|.+-+-+++|++.|++.+++
T Consensus 85 ~~~~~~~l~a~s~~e~~~Wi~al~~ 109 (118)
T 1v89_A 85 MGQDSYVLMASSQAEMEEWVKFLRR 109 (118)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHH
Confidence 4677888899999999999998875
No 7
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=29.14 E-value=26 Score=22.46 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.5
Q ss_pred chhhhhhcCCHHHHHHHHHHHHhc
Q 045228 122 KSVFMFNALSEDEKKALIEKLEQQ 145 (146)
Q Consensus 122 KSvf~yl~l~~~e~~~~~~~~~~~ 145 (146)
..+|.+-+-+++|++.|++.+++.
T Consensus 68 ~r~~~l~a~s~~e~~~Wi~al~~a 91 (103)
T 3rcp_A 68 EQHFYMKAVNAAERQRWLVALGSS 91 (103)
T ss_dssp TEEEEEECSSHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHHH
Confidence 457888899999999999998764
No 8
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=29.09 E-value=26 Score=23.32 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=22.9
Q ss_pred CCCCC--CcchhhhhhcCCHHHHHHHHHHHHh
Q 045228 115 IKDDI--GDKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 115 l~~DI--GDKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
-.|.| .|+.+|.+-+-+++|++.|++.+++
T Consensus 90 ~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~ 121 (129)
T 1x1g_A 90 NLFKVITKDDTHYYIQASSKAERAEWIEAIKK 121 (129)
T ss_dssp SCEEECCTTCCCEEECCSSHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 33444 3445688889999999999998875
No 9
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=28.31 E-value=26 Score=22.42 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.4
Q ss_pred cchhhhhhcCCHHHHHHHHHHHHh
Q 045228 121 DKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 121 DKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
|+..|.+-+-+++|++.|++.+++
T Consensus 83 ~~~~~~l~a~s~~e~~~Wi~ai~~ 106 (109)
T 2i5f_A 83 DEVHYFLQAATPKERTEWIKAIQM 106 (109)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHH
Confidence 456688889999999999998875
No 10
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=27.59 E-value=30 Score=21.83 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.1
Q ss_pred cchhhhhhcCCHHHHHHHHHHHHh
Q 045228 121 DKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 121 DKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
|+..|.+-+-+++|++.|++.+++
T Consensus 79 ~~r~~~l~a~s~~e~~~Wi~ai~~ 102 (108)
T 1u5d_A 79 DRRTYEFTATSPAEARDWVDQISF 102 (108)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCHHHHHHHHHHHHH
Confidence 446788889999999999998875
No 11
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=26.62 E-value=31 Score=22.63 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=19.4
Q ss_pred chhhhhhcCCHHHHHHHHHHHHh
Q 045228 122 KSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 122 KSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
+.+|.+-+-+++|++.|++.+++
T Consensus 95 ~r~~~l~a~s~~e~~~Wi~al~~ 117 (127)
T 1fgy_A 95 HVVYRISAPSPEEKEEWMKSIKA 117 (127)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHHH
Confidence 45788889999999999998875
No 12
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=26.37 E-value=44 Score=24.72 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.5
Q ss_pred cchhhhhhcCCHHHHHHHHHHHHhcC
Q 045228 121 DKSVFMFNALSEDEKKALIEKLEQQN 146 (146)
Q Consensus 121 DKSvf~yl~l~~~e~~~~~~~~~~~~ 146 (146)
|..|| ..||+|-|+.++.+-++++
T Consensus 69 DP~VF--yeLP~eVQ~ELla~Wr~~~ 92 (108)
T 2khu_A 69 DPQVF--YELPEAVQKELLAEWKRTG 92 (108)
T ss_dssp CHHHH--TTSCHHHHHHHHHHHHHHC
T ss_pred CHHHH--HHccHHHHHHHHHHHHHhC
Confidence 77888 8999999999998877653
No 13
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=26.08 E-value=30 Score=22.49 Aligned_cols=30 Identities=23% Similarity=0.100 Sum_probs=23.2
Q ss_pred CCCC--CcchhhhhhcCCHHHHHHHHHHHHhc
Q 045228 116 KDDI--GDKSVFMFNALSEDEKKALIEKLEQQ 145 (146)
Q Consensus 116 ~~DI--GDKSvf~yl~l~~~e~~~~~~~~~~~ 145 (146)
.|.| .|..+|.+-+=++||++.|++.+++.
T Consensus 78 ~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 109 (112)
T 3aj4_A 78 MLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109 (112)
T ss_dssp EEEEEETTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEEecCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 4455 24677888899999999999988763
No 14
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=25.75 E-value=32 Score=20.98 Aligned_cols=11 Identities=45% Similarity=0.673 Sum_probs=8.7
Q ss_pred CCHHHHHHHHH
Q 045228 130 LSEDEKKALIE 140 (146)
Q Consensus 130 l~~~e~~~~~~ 140 (146)
|+||||++++.
T Consensus 1 LseEEk~~I~~ 11 (38)
T 3l9k_W 1 LSEEQKQMIIL 11 (38)
T ss_dssp CCHHHHHHHHT
T ss_pred CCHHHHHHHhc
Confidence 68999997764
No 15
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.61 E-value=32 Score=22.29 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=23.6
Q ss_pred CCCC--CcchhhhhhcCCHHHHHHHHHHHHhc
Q 045228 116 KDDI--GDKSVFMFNALSEDEKKALIEKLEQQ 145 (146)
Q Consensus 116 ~~DI--GDKSvf~yl~l~~~e~~~~~~~~~~~ 145 (146)
.|.| .++.+|.+-+-+++|++.|++.+++.
T Consensus 76 ~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 107 (117)
T 2d9y_A 76 TFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 107 (117)
T ss_dssp EEEEECSSSCEEEEECSSHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 4454 35577888899999999999998764
No 16
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=25.14 E-value=28 Score=23.66 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.2
Q ss_pred cchhhhhhcCCHHHHHHHHHHHHh
Q 045228 121 DKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 121 DKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
|...|.+-|=++||++.|++.+++
T Consensus 98 ~~r~~~l~A~s~~e~~~Wi~ai~~ 121 (128)
T 2rlo_A 98 TGQTWHFEAASFEERDAWVQAIES 121 (128)
T ss_dssp TSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHH
Confidence 335788999999999999998875
No 17
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=24.89 E-value=35 Score=23.64 Aligned_cols=16 Identities=6% Similarity=0.391 Sum_probs=13.5
Q ss_pred hhcCCHHHHHHHHHHH
Q 045228 127 FNALSEDEKKALIEKL 142 (146)
Q Consensus 127 yl~l~~~e~~~~~~~~ 142 (146)
+--|++||+++++++.
T Consensus 12 H~iLs~eEk~~lL~~y 27 (78)
T 1hmj_A 12 HEIVPKEEVEEILKRY 27 (78)
T ss_pred eEECCHHHHHHHHHHc
Confidence 4568999999999875
No 18
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.81 E-value=34 Score=22.78 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=22.7
Q ss_pred CCCCCC--cchhhhhhcCCHHHHHHHHHHHHh
Q 045228 115 IKDDIG--DKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 115 l~~DIG--DKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
-.|.|- |..+|.+-+-++||++.|++.+++
T Consensus 70 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~ 101 (120)
T 2d9x_A 70 HTFTVNAASGEQYKLRATDAKERQHWVSRLQI 101 (120)
T ss_dssp SCEEECCSSSCCEEECCSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEECCCHHHHHHHHHHHHH
Confidence 344452 346788889999999999998874
No 19
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=24.12 E-value=49 Score=20.98 Aligned_cols=17 Identities=41% Similarity=0.356 Sum_probs=13.0
Q ss_pred cCCHHHHHHHHHHHHhc
Q 045228 129 ALSEDEKKALIEKLEQQ 145 (146)
Q Consensus 129 ~l~~~e~~~~~~~~~~~ 145 (146)
.++|||+-|+..++..|
T Consensus 3 ~mtEEEq~ALA~rmSeQ 19 (45)
T 3a1q_C 3 LGSEEEQFALALKMSEQ 19 (45)
T ss_dssp CSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhHH
Confidence 46788888888877655
No 20
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.58 E-value=32 Score=23.55 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=19.9
Q ss_pred cchhhhhhcCCHHHHHHHHHHHHh
Q 045228 121 DKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 121 DKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
|+.+|.+.+=++||++.|++.+++
T Consensus 88 ~~r~~~l~A~s~~e~~~Wi~al~~ 111 (130)
T 2d9v_A 88 EGSRLHLCAETRDDAIAWKTALME 111 (130)
T ss_dssp TSCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHH
Confidence 445688888899999999998875
No 21
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=23.37 E-value=56 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=18.0
Q ss_pred chhhhhhcCCHHHHHHHHHHHHhc
Q 045228 122 KSVFMFNALSEDEKKALIEKLEQQ 145 (146)
Q Consensus 122 KSvf~yl~l~~~e~~~~~~~~~~~ 145 (146)
...-.|..|++++|+++ +.++..
T Consensus 73 ~~~~~~~~l~~~~~~~~-~~l~~~ 95 (98)
T 3lfp_A 73 QIILTWNELNEQERKRI-NFYIRK 95 (98)
T ss_dssp HHHHHHTTCCHHHHHHH-HHHHTT
T ss_pred HHHHHHHhCCHHHHHHH-HHHHHh
Confidence 34567899999999999 776653
No 22
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=23.00 E-value=38 Score=22.36 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=20.2
Q ss_pred cchhhhhhcCCHHHHHHHHHHHHh
Q 045228 121 DKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 121 DKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
|+.+|.+-+-+++|++.|++.+++
T Consensus 93 ~~r~~~l~a~s~~e~~~Wi~al~~ 116 (128)
T 2dkp_A 93 NMRTYYFCTDTGKEMELWMKAMLD 116 (128)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHH
Confidence 446788889999999999998865
No 23
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=22.70 E-value=39 Score=21.87 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=19.9
Q ss_pred cchhhhhhcCCHHHHHHHHHHHHhc
Q 045228 121 DKSVFMFNALSEDEKKALIEKLEQQ 145 (146)
Q Consensus 121 DKSvf~yl~l~~~e~~~~~~~~~~~ 145 (146)
+..+|.+.+-+++|++.|++.+++.
T Consensus 85 ~~r~~~l~a~s~~e~~~Wi~al~~~ 109 (117)
T 1v5u_A 85 TRRVYNFCAQDVPSAQQWVDRIQSC 109 (117)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred CCceEEEECCCHHHHHHHHHHHHHH
Confidence 3445777888999999999998763
No 24
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=22.29 E-value=41 Score=22.39 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCCCCC--CcchhhhhhcCCHHHHHHHHHHHHh
Q 045228 114 PIKDDI--GDKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 114 Pl~~DI--GDKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
|-.|.| .|+..|.+-+-+++|++.|++.+++
T Consensus 85 ~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~ 117 (129)
T 1x05_A 85 ENLFEIITADEVHYFLQAATPKERTEWIKAIQM 117 (129)
T ss_dssp CSEEEEECTTCCCCEEECSSHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHH
Confidence 334444 2455688889999999999998875
No 25
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.21 E-value=40 Score=21.87 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.1
Q ss_pred cchhhhhhcCCHHHHHHHHHHHHh
Q 045228 121 DKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 121 DKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
|..+|.+.+-+++|++.|++.+++
T Consensus 75 ~~r~~~l~a~s~~e~~~Wi~ai~~ 98 (113)
T 1pls_A 75 KQQDHFFQAAFLEERDAWVRDINK 98 (113)
T ss_dssp TTEEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHH
Confidence 446788889999999999998875
No 26
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=21.29 E-value=54 Score=20.67 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHh
Q 045228 131 SEDEKKALIEKLEQ 144 (146)
Q Consensus 131 ~~~e~~~~~~~~~~ 144 (146)
|.+||+.+|+++.+
T Consensus 2 s~~ere~~i~~Lre 15 (43)
T 2l2l_A 2 SPEERERMIKQLKE 15 (43)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 56788888877765
No 27
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.89 E-value=40 Score=22.03 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=23.2
Q ss_pred CCCCC--CcchhhhhhcCCHHHHHHHHHHHHh
Q 045228 115 IKDDI--GDKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 115 l~~DI--GDKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
-.|.| .++.+|.+-+-+++|++.|++.+++
T Consensus 86 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~ 117 (122)
T 2yry_A 86 HTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 117 (122)
T ss_dssp SEEEEECSSSCEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecCCCcEEEEEcCCHHHHHHHHHHHHH
Confidence 34444 3567788889999999999998875
No 28
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=20.77 E-value=44 Score=22.43 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.5
Q ss_pred cchhhhhhcCCHHHHHHHHHHHHh
Q 045228 121 DKSVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 121 DKSvf~yl~l~~~e~~~~~~~~~~ 144 (146)
|...|-|-|=++||.+.|++.+.+
T Consensus 75 ~~~~y~f~A~s~ee~~~Wi~ai~~ 98 (112)
T 3cxb_B 75 DRPCLELSAESEAEMAEWMQHLCQ 98 (112)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHH
Confidence 566788999999999999988764
No 29
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=20.65 E-value=42 Score=23.14 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=13.8
Q ss_pred hhcCCHHHHHHHHHHHH
Q 045228 127 FNALSEDEKKALIEKLE 143 (146)
Q Consensus 127 yl~l~~~e~~~~~~~~~ 143 (146)
+--||+||++.++++..
T Consensus 14 H~iLs~eEk~~lL~~y~ 30 (77)
T 1eik_A 14 HVILNESEAKRVLKELD 30 (77)
T ss_dssp EEEECHHHHHHHHHHTT
T ss_pred EEEcCHHHHHHHHHHcC
Confidence 44689999999998853
No 30
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=20.35 E-value=59 Score=27.64 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=17.7
Q ss_pred hhhhhhcCCHHHHHHHHHHHHh
Q 045228 123 SVFMFNALSEDEKKALIEKLEQ 144 (146)
Q Consensus 123 Svf~yl~l~~~e~~~~~~~~~~ 144 (146)
+.+=|-.||.+||+.++++++.
T Consensus 180 p~~F~rnl~~~ErqeLl~~Lk~ 201 (289)
T 1r8j_A 180 PDRFLRNLPAYESQKLHQAMQT 201 (289)
T ss_dssp GGGSTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 4455778999999999998875
No 31
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=20.10 E-value=50 Score=21.03 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHhc
Q 045228 130 LSEDEKKALIEKLEQQ 145 (146)
Q Consensus 130 l~~~e~~~~~~~~~~~ 145 (146)
|+|||+-|+..|+..|
T Consensus 1 MtEEEq~ALA~kmSeQ 16 (46)
T 2rr9_C 1 MTEEEQFALALKMSEQ 16 (46)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhHH
Confidence 4567777766666444
Done!