BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045232
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 31/302 (10%)
Query: 250 LTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIY 309
+ +AVVAQDGTG + T+ A+ + PD K Y IYVK G Y+E V + N+ I
Sbjct: 1 IIANAVVAQDGTGDYQTLAEAVAAAPD--KSKTRYVIYVKRGTYKENVEVASNKMNLMIV 58
Query: 310 GDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVR 369
GDG T + +++ G + SAT++ + +GF+ ++I I + GP +A AL V
Sbjct: 59 GDGMYATTITGSLNVVD--GSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVG 116
Query: 370 ADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRPNRT 429
AD +V CRID YQ TL A + RQFY + ++GT DFI G+A + Q ++ R+P +
Sbjct: 117 ADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKY 176
Query: 430 TRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPL------------- 476
+N+VTA R +Q T +Q C ++A L +F TYLGRP
Sbjct: 177 QQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYL 236
Query: 477 -------------GPYATTAFRFLEYNNNGPSANTTNRVKWSGVKEI-DKNEALAFTVST 522
G +A + E+ NNGP A T+ RVKW G I D +A+ FTV+
Sbjct: 237 GGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAK 296
Query: 523 LL 524
L+
Sbjct: 297 LI 298
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 150/305 (49%), Gaps = 31/305 (10%)
Query: 247 KEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNV 306
+ P+ VVA DG+G + T+ A+ + P+D K Y I +KAG+Y E V + +N+
Sbjct: 2 SSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSK--TRYVIRIKAGVYRENVDVPKKKKNI 59
Query: 307 FIYGDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANAL 366
GDG T T + + + + G + NSATV+ + GF+AR+I + G +A AL
Sbjct: 60 MFLGDGRTSTIITASKNVQD--GSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVAL 117
Query: 367 YVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRP 426
V +D + F C I YQ +L + RQF++NC I+GT DFI G+A ++Q+ I RRP
Sbjct: 118 RVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRP 177
Query: 427 NRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPL---------- 476
+N+VTA R +Q T V+QK + A L + F TYLGRP
Sbjct: 178 GSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQ 237
Query: 477 ----------------GPYATTAFRFLEYNNNGPSANTTNRVKWSGVKEI-DKNEALAFT 519
G +A + EY N G A T+ RV W G K I EA FT
Sbjct: 238 SSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFT 297
Query: 520 VSTLL 524
+ +
Sbjct: 298 PGSFI 302
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 119/266 (44%), Gaps = 39/266 (14%)
Query: 251 TPSAVVAQ---DGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVF 307
T +AVV++ DG F TI A+ S P + I +K G+Y E++TI N+
Sbjct: 3 TYNAVVSKSSSDGK-TFKTIADAIASAP---AGSTPFVILIKNGVYNERLTIT--RNNLH 56
Query: 308 IYGDGNTKTFVVLHQPI--LERIGR--SIENSATVSVMAEGFMAREIGIISNFGPDARRA 363
+ G+ + L+ G S+T+++ A+ F A+ + I ++F A +A
Sbjct: 57 LKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQA 116
Query: 364 N--------------ALYV--RADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDF 407
ALYV D+A F D + GYQ TL R F+ +C ISGT DF
Sbjct: 117 KSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDF 176
Query: 408 ITGDATAIIQNSWILVR-RPNRTTRNI---VTAHARDLKSQTTAFVLQKCVLLADKALWE 463
I GD TA+ N ++ R R + + N+ +TA + ++ + + V+ ++
Sbjct: 177 IFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPA 236
Query: 464 DRYKFRTYLGRPLGPYATTAFRFLEY 489
Y LGRP P TT F Y
Sbjct: 237 KSYG----LGRPWHP--TTTFSDGRY 256
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 119/266 (44%), Gaps = 39/266 (14%)
Query: 251 TPSAVVAQ---DGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVF 307
T +AVV++ DG F TI A+ S P + I +K G+Y E++TI N+
Sbjct: 3 TYNAVVSKSSSDGK-TFKTIADAIASAP---AGSTPFVILIKNGVYNERLTIT--RNNLH 56
Query: 308 IYGDGNTKTFVVLHQPI--LERIGR--SIENSATVSVMAEGFMAREIGIISNFGPDARRA 363
+ G+ + L+ G S+T+++ A+ F A+ + I ++F A +A
Sbjct: 57 LKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQA 116
Query: 364 N--------------ALYV--RADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDF 407
ALYV D+A F D + GYQ TL R F+ +C ISGT DF
Sbjct: 117 KSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDF 176
Query: 408 ITGDATAIIQNSWILVR-RPNRTTRNI---VTAHARDLKSQTTAFVLQKCVLLADKALWE 463
I GD TA+ N ++ R R + + N+ +TA + ++ + + V+ ++
Sbjct: 177 IFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPA 236
Query: 464 DRYKFRTYLGRPLGPYATTAFRFLEY 489
Y LGRP P TT F Y
Sbjct: 237 KSYG----LGRPWHP--TTTFSDGRY 256
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 119/266 (44%), Gaps = 39/266 (14%)
Query: 251 TPSAVVAQ---DGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVF 307
T +AVV++ DG F TI A+ S P + I +K G+Y E++TI N+
Sbjct: 3 TYNAVVSKSSSDGK-TFKTIADAIASAP---AGSTPFVILIKNGVYNERLTIT--RNNLH 56
Query: 308 IYGDGNTKTFVVLHQPI--LERIGR--SIENSATVSVMAEGFMAREIGIISNFGPDARRA 363
+ G+ + L+ G S+T+++ A+ F A+ + I ++F A +A
Sbjct: 57 LKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQA 116
Query: 364 N--------------ALYV--RADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDF 407
ALYV D+A F D + GYQ TL R F+ +C ISGT DF
Sbjct: 117 KSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDF 176
Query: 408 ITGDATAIIQNSWILVR-RPNRTTRNI---VTAHARDLKSQTTAFVLQKCVLLADKALWE 463
I GD TA+ N ++ R R + + N+ +TA + ++ + + V+ ++
Sbjct: 177 IFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPA 236
Query: 464 DRYKFRTYLGRPLGPYATTAFRFLEY 489
Y LGRP P TT F Y
Sbjct: 237 KSYG----LGRPWHP--TTTFSDGRY 256
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 31/196 (15%)
Query: 253 SAVVAQDGTG-QFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGD 311
+AVV+ G +F +I +AL S P K+ + I++K G+Y E++ + H V + G+
Sbjct: 32 NAVVSTTPQGDEFSSINAALKSAP---KDDTPFIIFLKNGVYTERLEVARSH--VTLKGE 86
Query: 312 GNTKTFVVLH------QPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANA 365
T + + P E+ G S S+TV V A F A + I ++F A + A
Sbjct: 87 NRDGTVIGANTAAGMLNPQGEKWGTS--GSSTVLVNAPNFTAENLTIRNDFDFPANKKKA 144
Query: 366 ----------------LYVRADKAVFVDCRIDGYQRTLVAQ-AYRQFYLNCIISGTRDFI 408
L +DKA F +++GYQ TL ++ R ++ +C ISG DFI
Sbjct: 145 DTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFI 204
Query: 409 TGDATAIIQNSWILVR 424
G + N I+ R
Sbjct: 205 FGSGITVFDNCNIVAR 220
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 145 SYQADEIMPKLNAVITFQKACLAGFKRKSRPQKENLTGPMQESRQLGSIALTTI 198
SYQ +EI NA + + LAGF + PQ E L G + + ++ S LT +
Sbjct: 540 SYQTNEIAINWNAALIY---ALAGFVNYNSPQNEVLYGDVNDDGKVNSTDLTLL 590
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 223 FQTGEVYKFPPWFSTANRELLAIPKEMLTPSAVVAQ 258
++T +++ WFS + ++ +P EM TP V+A+
Sbjct: 330 WETKKMFPNLDWFSAVSYNMMGVPTEMFTPLFVIAR 365
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 170 KRKSRPQKENLTGPMQESRQLGSIALTTIYELPRHLHYFNM 210
K ++ + E M + R+L + AL +Y LP++LHY ++
Sbjct: 53 KLPTKSELEEFKRKMADYRELPAEALGILYHLPKNLHYIDV 93
>pdb|1G5G|A Chain A, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|B Chain B, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|C Chain C, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|D Chain D, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|E Chain E, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|F Chain F, Fragment Of Fusion Protein From Newcastle Disease Virus
Length = 481
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 66 NRANTSDPKELIKAMIIRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGDCMEMLQLC 125
N AN KE I A HE L +LA ++ K VND +++ DC+++ Q
Sbjct: 116 NAANILRLKESIAATNEAVHEVTNGLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQV 175
Query: 126 MVDL 129
V+L
Sbjct: 176 GVEL 179
>pdb|1RD4|A Chain A, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
pdb|1RD4|B Chain B, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
pdb|1RD4|C Chain C, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
pdb|1RD4|D Chain D, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
Length = 191
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 63 ETLNRANTSDPKELIKAMI-----IRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGD 117
E + N K++I+ +I ++ E+ LH+ A A E + DT+++ DL
Sbjct: 121 EATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDL-- 178
Query: 118 CMEMLQLCMVDLQKTVDIIEA 138
+LQK + +IE
Sbjct: 179 --------FTELQKKIYVIEG 191
>pdb|1XDD|A Chain A, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa703
At 2.2a Resolution
pdb|1XDD|B Chain B, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa703
At 2.2a Resolution
pdb|1XDG|A Chain A, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa878
At 2.1a Resolution
pdb|1XDG|B Chain B, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa878
At 2.1a Resolution
pdb|1XUO|A Chain A, X-ray Structure Of Lfa-1 I-domain Bound To A
1,4-diazepane- 2,5-dione Inhibitor At 1.8a Resolution
pdb|1XUO|B Chain B, X-ray Structure Of Lfa-1 I-domain Bound To A
1,4-diazepane- 2,5-dione Inhibitor At 1.8a Resolution
pdb|1DGQ|A Chain A, Nmr Solution Structure Of The Inserted Domain Of Human
Leukocyte Function Associated Antigen-1
Length = 188
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 63 ETLNRANTSDPKELIKAMI-----IRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGD 117
E + N K++I+ +I ++ E+ LH+ A A E + DT+++ DL
Sbjct: 118 EATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDL-- 175
Query: 118 CMEMLQLCMVDLQKTVDIIEA 138
+LQK + +IE
Sbjct: 176 --------FTELQKKIYVIEG 188
>pdb|1LFA|A Chain A, Cd11a I-Domain With Bound Mn++
pdb|1LFA|B Chain B, Cd11a I-Domain With Bound Mn++
pdb|1ZOO|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOO|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOP|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOP|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZON|A Chain A, Cd11a I-Domain Without Bound Cation
Length = 187
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 63 ETLNRANTSDPKELIKAMI-----IRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGD 117
E + N K++I+ +I ++ E+ LH+ A A E + DT+++ DL
Sbjct: 117 EATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDL-- 174
Query: 118 CMEMLQLCMVDLQKTVDIIEA 138
+LQK + +IE
Sbjct: 175 --------FTELQKKIYVIEG 187
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 34 NVNWEAKKSPLRKAVNQLCAPTSFTDLCIETLNRANTSDPKELIKAMIIRSHEAIAKLHE 93
N + K PLR++ L + +T N TSDP+ L+K + I H+ ++++ +
Sbjct: 62 NQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDI--HDELSQMDD 119
Query: 94 LADSMAKELANVNDTYDQRNDLGDC 118
A E N D LG C
Sbjct: 120 EAGVKLLEKQNKERIQDIEAQLGQC 144
>pdb|3MAW|A Chain A, Structure Of The Newcastle Disease Virus F Protein In The
Po Conformation
pdb|3MAW|B Chain B, Structure Of The Newcastle Disease Virus F Protein In The
Po Conformation
Length = 483
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 66 NRANTSDPKELIKAMIIRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGDCMEMLQLC 125
N AN KE I A HE L +LA ++ K VND ++ DC+++ Q
Sbjct: 116 NAANILRLKESITATNEAVHEVTDGLSQLAVAVGKMQQFVNDQFNNTAQELDCIKITQQV 175
Query: 126 MVDL 129
V+L
Sbjct: 176 GVEL 179
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 34 NVNWEAKKSPLRKAVNQLCAPTSFTDLCIETLNRANTSDPKELIKAMIIRSHEAIAKLHE 93
N + K PLR++ L + +T N TSDP+ L+K + I H+ ++++ +
Sbjct: 54 NQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDI--HDELSQMDD 111
Query: 94 LADSMAKELANVNDTYDQRNDLGDC 118
A E N D LG C
Sbjct: 112 EAGVKLLEKQNKERIQDIEAQLGQC 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,957,881
Number of Sequences: 62578
Number of extensions: 605076
Number of successful extensions: 1175
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 22
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)