BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045233
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 130 GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKI 189
G IP IG++ L L+LG+N+++G IP +V ++ L LD+S+NK+
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPD-------------EVGDLRGLNILDLSSNKL 689
Query: 190 EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238
+G IP ++ L+ + LS N LSGP+P Q T + N GL
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGL 737
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 130 GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-----------KVTSMKN 178
G IP + N LV L L N L+G IPS+L L+ L+ L L ++ +K
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 179 LTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
L L + N + G IP L+ + + +SLS N+L+G +P +L + I++LS N
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 104 FTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163
G IP ++ G IPS + N NL + L NN LTG IP + RL
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 164 TNLKYLDL-----------KVTSMKNLTWLDISNNKIEGSIPGEL 197
NL L L ++ ++L WLD++ N G+IP +
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 101 YYGFTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTL 160
Y +G IP +I G+IP +G+LR L LDL +N L G IP +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 161 ARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIP 194
+ LT LT +D+SNN + G IP
Sbjct: 698 SALT-------------MLTEIDLSNNNLSGPIP 718
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 142 LVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELS 201
++ LD+ N L+G IP ++ SM L L++ +N I GSIP E+ +L
Sbjct: 631 MMFLDMSYNMLSGYIPK-------------EIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 202 RPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
+ L LS+NKL G +P + L+ + + LS N
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 130 GTIPSNIGNLR-NLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNK 188
G +P ++ NL +L+ LDL +NN +GPI L + L L + NN
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ-----------NPKNTLQELYLQNNG 402
Query: 189 IEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRL 232
G IP L+ S L LS N LSG +P S LS + ++L
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 142 LVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN----------LTWLDISNNKIEG 191
L HL + N ++G + ++R NL++LD+ + L LDIS NK+ G
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 234
Query: 192 SIPGELTELSRPDCLSLSANKLSGPVP 218
++ + L++S+N+ GP+P
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS---------MKNLTWLDISN 186
+G+ L HLD+ N L+G ++ T LK L++ +K+L +L ++
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 275
Query: 187 NKIEGSIPGELTELSRP-DCLSLSANKLSGPVP 218
NK G IP L+ L LS N G VP
Sbjct: 276 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 66/190 (34%), Gaps = 57/190 (30%)
Query: 104 FTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLAR- 162
TG IP I G IP+ +G+ R+L+ LDL N G IP+ + +
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 163 --------LTNLKYLDLKVTSMK------------------------------------- 177
+ +Y+ +K MK
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 178 -----------NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLST 226
++ +LD+S N + G IP E+ + L+L N +SG +P L
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 227 MYIVRLSPNK 236
+ I+ LS NK
Sbjct: 679 LNILDLSSNK 688
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 14/76 (18%)
Query: 142 LVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIE--GSIPGELTE 199
L LDL N+L+GP+ +TL L S L +L++S+N ++ G + G L +
Sbjct: 99 LTSLDLSRNSLSGPV-TTLTSL----------GSCSGLKFLNVSSNTLDFPGKVSGGL-K 146
Query: 200 LSRPDCLSLSANKLSG 215
L+ + L LSAN +SG
Sbjct: 147 LNSLEVLDLSANSISG 162
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 130 GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKI 189
G IP IG++ L L+LG+N+++G IP +V ++ L LD+S+NK+
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPD-------------EVGDLRGLNILDLSSNKL 692
Query: 190 EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238
+G IP ++ L+ + LS N LSGP+P Q T + N GL
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGL 740
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 130 GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-----------KVTSMKN 178
G IP + N LV L L N L+G IPS+L L+ L+ L L ++ +K
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 179 LTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
L L + N + G IP L+ + + +SLS N+L+G +P +L + I++LS N
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 106 GSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165
G IP ++ G IPS + N NL + L NN LTG IP + RL N
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 166 LKYLDL-----------KVTSMKNLTWLDISNNKIEGSIPGEL 197
L L L ++ ++L WLD++ N G+IP +
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 97 IQAYYYGFTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPI 156
+ Y +G IP +I G+IP +G+LR L LDL +N L G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 157 PSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIP 194
P ++ LT LT +D+SNN + G IP
Sbjct: 697 PQAMSALT-------------MLTEIDLSNNNLSGPIP 721
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 142 LVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELS 201
++ LD+ N L+G IP ++ SM L L++ +N I GSIP E+ +L
Sbjct: 634 MMFLDMSYNMLSGYIPK-------------EIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 202 RPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
+ L LS+NKL G +P + L+ + + LS N
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 130 GTIPSNIGNLR-NLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNK 188
G +P ++ NL +L+ LDL +NN +GPI L + L L + NN
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ-----------NPKNTLQELYLQNNG 405
Query: 189 IEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRL 232
G IP L+ S L LS N LSG +P S LS + ++L
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 142 LVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN----------LTWLDISNNKIEG 191
L HL + N ++G + ++R NL++LD+ + L LDIS NK+ G
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237
Query: 192 SIPGELTELSRPDCLSLSANKLSGPVP 218
++ + L++S+N+ GP+P
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS---------MKNLTWLDISN 186
+G+ L HLD+ N L+G ++ T LK L++ +K+L +L ++
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278
Query: 187 NKIEGSIPGELTELSRP-DCLSLSANKLSGPVP 218
NK G IP L+ L LS N G VP
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 66/190 (34%), Gaps = 57/190 (30%)
Query: 104 FTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLAR- 162
TG IP I G IP+ +G+ R+L+ LDL N G IP+ + +
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 163 --------LTNLKYLDLKVTSMK------------------------------------- 177
+ +Y+ +K MK
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 178 -----------NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLST 226
++ +LD+S N + G IP E+ + L+L N +SG +P L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 227 MYIVRLSPNK 236
+ I+ LS NK
Sbjct: 682 LNILDLSSNK 691
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 14/76 (18%)
Query: 142 LVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIE--GSIPGELTE 199
L LDL N+L+GP+ +TL L S L +L++S+N ++ G + G L +
Sbjct: 102 LTSLDLSRNSLSGPV-TTLTSL----------GSCSGLKFLNVSSNTLDFPGKVSGGL-K 149
Query: 200 LSRPDCLSLSANKLSG 215
L+ + L LSAN +SG
Sbjct: 150 LNSLEVLDLSANSISG 165
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 132 IPSNIGNLRNLVHLDLGN-NNLTGPIPSTLARLTNLKYLDLKVTS-----------MKNL 179
IPS++ NL L L +G NNL GPIP +A+LT L YL + T+ +K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 180 TWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS----NKQLSTMYIVR 231
LD S N + G++P ++ L ++ N++SG +P S +K ++M I R
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 60/153 (39%), Gaps = 36/153 (23%)
Query: 101 YYGFTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNL-VHLDLGNNNLTGPIPST 159
Y +G++P I G IP + G+ L + + N LTG IP T
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 160 LARLTNLKYLDL----------------------------------KVTSMKNLTWLDIS 185
A L NL ++DL KV KNL LD+
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252
Query: 186 NNKIEGSIPGELTELSRPDCLSLSANKLSGPVP 218
NN+I G++P LT+L L++S N L G +P
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 33/204 (16%)
Query: 39 SFWMANYSSDHCKWIGITCNSAGS--------IIGLNLSWYDVDLNAQAQLSQLNFSCFP 90
S W+ + W+G+ C++ + GLNL ++ A L LNF
Sbjct: 25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84
Query: 91 NLESLRIQAYYYGFTGSIPSDIXXXXXXXXXXXXXXXXXGTIPSNIGNLRNLVHLDLGNN 150
+ +L G IP I G IP + ++ LV LD N
Sbjct: 85 GINNL---------VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 151 NLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRP-DCLSLS 209
L+G +P + ++S+ NL + N+I G+IP S+ +++S
Sbjct: 136 ALSGTLPPS-------------ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 210 ANKLSGPVP--FSNKQLSTMYIVR 231
N+L+G +P F+N L+ + + R
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSR 206
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK------------VTSMKNLTWLDISN 186
LRNL++LD+ + + L++L+ L + T ++NLT+LD+S
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240
++E P LS L++S N F K L+++ ++ S N + S
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 131 TIPSNIGNLRNLVHLDLGNNNLTGPIP-STLARLTNLKYLDLKVTSMK-----------N 178
T+ SN L L HLD ++NL S L NL YLD+ T + +
Sbjct: 411 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470
Query: 179 LTWLDISNNKI-EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
L L ++ N E +P TEL L LS +L P + LS++ ++ +S N
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK------------VTSMKNLTWLDISN 186
LRNL++LD+ + + L++L+ L + T ++NLT+LD+S
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240
++E P LS L++S N F K L+++ ++ S N + S
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 131 TIPSNIGNLRNLVHLDLGNNNLTGPIP-STLARLTNLKYLDLKVTSMK-----------N 178
T+ SN L L HLD ++NL S L NL YLD+ T + +
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 179 LTWLDISNNKI-EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
L L ++ N E +P TEL L LS +L P + LS++ ++ +S N
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 134 SNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLK--YLDLK-------VTSMKNLTWLDI 184
S I L+++ LDL + +T P LA L+NL+ YLDL + + NL +L I
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 164
Query: 185 SNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN------KQLSTMYIVRLSPNKGL 238
NN++ P L LS+ L NK+S P ++ L I +SP L
Sbjct: 165 GNNQVNDLTP--LANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSPLANL 222
Query: 239 GSNFIIVL 246
+ FI+ L
Sbjct: 223 SNLFIVTL 230
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK------------VTSMKNLTWLDISN 186
LRNL++LD+ + + L++L+ L + T ++NLT+LD+S
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVP 218
++E P LS L++++N+L VP
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKS-VP 510
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 131 TIPSNIGNLRNLVHLDLGNNNLTGPIP-STLARLTNLKYLDLKVTSMK-----------N 178
T+ SN L L HLD ++NL S L NL YLD+ T + +
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 179 LTWLDISNNKI-EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
L L ++ N E +P TEL L LS +L P + LS++ ++ ++ N+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK------------VTSMKNLTWLDISN 186
LRNL++LD+ + + L++L+ L + T ++NLT+LD+S
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240
++E P LS L++S N F K L+++ ++ S N + S
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 131 TIPSNIGNLRNLVHLDLGNNNLTGPIP-STLARLTNLKYLDLKVTSMK-----------N 178
T+ SN L L HLD ++NL S L NL YLD+ T + +
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 179 LTWLDISNNKI-EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235
L L ++ N E +P TEL L LS +L P + LS++ ++ +S N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------VTSMKNLTWLDISN 186
+ L NL L NN ++ P L LTNL L L + S+ NLT LD++N
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 248
Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
N+I P L+ L++ L L AN++S P +
Sbjct: 249 NQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------VTSMKNLTWLDISN 186
+ L NL L NN ++ P L LTNL L L + S+ NLT LD++N
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 248
Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
N+I P L+ L++ L L AN++S P +
Sbjct: 249 NQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------VTSMKNLTWLDISN 186
+ L NL L NN ++ P L LTNL L L + S+ NLT LD++N
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 248
Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
N+I P L+ L++ L L AN++S P +
Sbjct: 249 NQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------VTSMKNLTWLDISN 186
+ L NL L NN ++ P L LTNL L L + S+ NLT LD++N
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 247
Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
N+I P L+ L++ L L AN++S P +
Sbjct: 248 NQISNLAP--LSGLTKLTELKLGANQISNISPLA 279
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------VTSMKNLTWLDISN 186
+ L NL L NN ++ P L LTNL L L + S+ NLT LD++N
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 247
Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
N+I P L+ L++ L L AN++S P +
Sbjct: 248 NQISNLAP--LSGLTKLTELKLGANQISNISPLA 279
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------VTSMKNLTWLDISN 186
+ L NL L NN ++ P L LTNL L L + S+ NLT LD++N
Sbjct: 194 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 251
Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
N+I P L+ L++ L L AN++S P +
Sbjct: 252 NQISNLAP--LSGLTKLTELKLGANQISNISPLA 283
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK---------VTSMKNLTWLDISN 186
+ L NL L NN ++ P L LTNL L L + S+ NLT LD++N
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 252
Query: 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
N+I P L+ L++ L L AN++S P +
Sbjct: 253 NQISNLAP--LSGLTKLTELKLGANQISNISPLA 284
>pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|B Chain B, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|C Chain C, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|D Chain D, 1-Cys Peroxidoxin From Plasmodium Yoelli
Length = 220
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 1 SIFRLVALAWVVIFATAFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSA 60
+++ + +W ++F+ F+P+ T L + G + F N CK IG +CNS
Sbjct: 24 ELYKYIENSWAILFSHPNDFTPVX--TTELAELGKMHEDFLKLN-----CKLIGFSCNSK 76
Query: 61 GS 62
S
Sbjct: 77 ES 78
>pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|B Chain B, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|C Chain C, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|D Chain D, 1-Cys Peroxidoxin From Plasmodium Yoelli
Length = 220
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 1 SIFRLVALAWVVIFATAFAFSPIQLETKALLDTGWWNSSFWMANYSSDHCKWIGITCNSA 60
+++ + +W ++F+ F+P+ T L + G + F N CK IG +CNS
Sbjct: 24 ELYKYIENSWAILFSHPNDFTPVC--TTELAELGKMHEDFLKLN-----CKLIGFSCNSK 76
Query: 61 GS 62
S
Sbjct: 77 ES 78
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMK-----------NLTWLDISNN 187
L NL L L N L +LTNL YL L ++ NLT LD+ NN
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN 167
Query: 188 KIEGSIPGELTELSRPDCLSLSANKL 213
+++ G +L++ LSL+ N+L
Sbjct: 168 QLQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 14/75 (18%)
Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELT 198
LRN+ HLDL +N+LTG ++ L++LK L +L++++N I P L
Sbjct: 498 LRNVNHLDLSHNSLTG---DSMDALSHLKGL-----------YLNMASNNIRIIPPHLLP 543
Query: 199 ELSRPDCLSLSANKL 213
LS+ ++LS N L
Sbjct: 544 ALSQQSIINLSHNPL 558
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 137 GNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMK-----------NLTWLDIS 185
G L +LV L+L N LTG P+ ++++ L L +K L L++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 186 NNKIEGSIPGELTELSRPDCLSLSAN 211
+N+I +PG L+ L+L++N
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 143 VHLDLGNNNLTGPIPSTLARLTNLKYLDLKV-------------TSMKNLTWLDISNNKI 189
+HLD NN LT + LT L+ L L++ T MK+L LDIS N +
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
>pdb|1OF4|A Chain A, Structural And Thermodynamic Dissection Of Specific
Mannan Recognition By A Carbohydrate-Binding Module,
Tmcbm27
pdb|1OH4|A Chain A, Structural And Thermodynamic Dissection Of Specific
Mannan Recognition By A Carbohydrate-Binding Module
Length = 179
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 35 WWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNL------SWYDVDLNAQ-AQLSQ---L 84
WWNS W A + S +W G N A + LN+ W +V + + +LS+ L
Sbjct: 25 WWNSGTWQAEFGSPDIEWNGEVGNGA---LQLNVKLPGKSDWEEVRVARKFERLSECEIL 81
Query: 85 NFSCF-PNLESLR 96
+ + PN+E L+
Sbjct: 82 EYDIYIPNVEGLK 94
>pdb|1OF3|A Chain A, Structural And Thermodynamic Dissection Of Specific
Mannan Recognition By A Carbohydrate-Binding Module,
Tmcbm27
pdb|1OF3|B Chain B, Structural And Thermodynamic Dissection Of Specific
Mannan Recognition By A Carbohydrate-Binding Module,
Tmcbm27
Length = 179
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 35 WWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNL------SWYDVDLNAQ-AQLSQ---L 84
WWNS W A + S +W G N A + LN+ W +V + + +LS+ L
Sbjct: 25 WWNSGTWQAEFGSPDIEWNGEVGNGA---LQLNVKLPGKSDWEEVRVARKFERLSECEIL 81
Query: 85 NFSCF-PNLESLR 96
+ + PN+E L+
Sbjct: 82 EYDIYIPNVEGLK 94
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 134 SNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLK--YLDLK-------VTSMKNLTWLDI 184
S I L+++ LDL + +T P LA L+NL+ YLDL + + NL +L I
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158
Query: 185 SNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220
N ++ P L LS+ L NK+S P +
Sbjct: 159 GNAQVSDLTP--LANLSKLTTLKADDNKISDISPLA 192
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 133 PSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNL 179
PS LRNL LDL NNN+ L L NL+ LD + ++ L
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL 519
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 139 LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMK-----------NLTWLDISNN 187
L NL L L N L +LTNL YL+L ++ NLT LD+S N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 188 KIEGSIPGELTELSRPDCLSLSANKL 213
+++ G +L++ L L N+L
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 134 SNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMK-----------NLTWL 182
S + L NL +L L N L +LTNLK L L ++ NLT+L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 183 DISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
++++N+++ G +L+ L LS N+L +L+ + +RL N+
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 145 LDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPD 204
LDL NN ++T +K D K ++KNL L + NNKI PG L + +
Sbjct: 57 LDLQNN-----------KITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 205 CLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
L LS N+L K T+ +R+ N+
Sbjct: 104 RLYLSKNQLKE---LPEKMPKTLQELRVHENE 132
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 145 LDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPD 204
LDL NN ++T +K D K ++KNL L + NNKI PG L + +
Sbjct: 57 LDLQNN-----------KITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 205 CLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236
L LS N+L K T+ +R+ N+
Sbjct: 104 RLYLSKNQLKE---LPEKMPKTLQELRVHENE 132
>pdb|1O70|A Chain A, Novel Fold Revealed By The Structure Of A Fas1 Domain Pair
From The Insect Cell Adhesion Molecule Fasciclin I
Length = 324
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 274 IWNYDRSIVYEDLIEATEGFDYLIQFPKFES 304
IWNY + VY +E T G ++I +P E
Sbjct: 280 IWNYKKINVYRPDVECTNGIIHVIDYPLLEE 310
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 141 NLVHLDLGNNNLTGPIPSTLARLTNLKYLDLK-----------VTSMKNLTWLDISNNKI 189
+L L+L N ++ P L NL+ L L+ T + NLT LDIS NKI
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 26/127 (20%)
Query: 136 IGNLRNLVHLD---LGNNNLTGPIPSTLARLTNLKYLDLKVTSMK-----------NLTW 181
+G +L LD LG N L RLT LK L L ++ NL
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 182 LDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYI---VRLSPNK-- 236
L +S N+++ G L + ++L N+ F + T+Y+ +R + NK
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ------FDCSRCETLYLSQWIRENSNKVK 213
Query: 237 -GLGSNF 242
G G N
Sbjct: 214 DGTGQNL 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,690,648
Number of Sequences: 62578
Number of extensions: 323183
Number of successful extensions: 944
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 201
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)