Query 045233
Match_columns 325
No_of_seqs 449 out of 3306
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:09:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 6.2E-25 1.3E-29 227.1 19.4 209 23-240 27-275 (968)
2 PLN00113 leucine-rich repeat r 99.9 2.5E-24 5.5E-29 222.5 20.4 234 85-324 423-723 (968)
3 KOG4194 Membrane glycoprotein 99.7 2.6E-18 5.7E-23 158.8 3.5 167 70-238 153-354 (873)
4 KOG4194 Membrane glycoprotein 99.7 7.2E-18 1.6E-22 155.9 2.5 165 73-239 252-430 (873)
5 KOG4237 Extracellular matrix p 99.6 2E-17 4.3E-22 146.7 -0.2 168 71-240 72-337 (498)
6 KOG0617 Ras suppressor protein 99.6 2.8E-18 6.1E-23 136.3 -5.6 148 71-238 38-186 (264)
7 PLN03150 hypothetical protein; 99.6 4.1E-15 8.9E-20 146.1 11.9 152 20-214 367-528 (623)
8 KOG0617 Ras suppressor protein 99.6 2.2E-17 4.8E-22 131.2 -5.0 155 67-241 57-215 (264)
9 KOG0444 Cytoskeletal regulator 99.6 3.9E-16 8.3E-21 145.8 0.3 147 86-238 99-281 (1255)
10 KOG0472 Leucine-rich repeat pr 99.6 7.3E-17 1.6E-21 143.4 -4.3 179 50-238 121-310 (565)
11 KOG0444 Cytoskeletal regulator 99.5 2E-16 4.4E-21 147.6 -4.0 162 71-237 131-328 (1255)
12 KOG0472 Leucine-rich repeat pr 99.5 5.4E-15 1.2E-19 131.7 3.2 98 69-174 209-307 (565)
13 PRK15387 E3 ubiquitin-protein 99.4 1.6E-12 3.4E-17 128.7 10.7 75 164-243 382-463 (788)
14 cd00116 LRR_RI Leucine-rich re 99.3 3.2E-13 7E-18 122.4 2.2 151 86-238 77-263 (319)
15 PLN03210 Resistant to P. syrin 99.3 1.9E-11 4.2E-16 128.3 14.1 99 71-174 616-714 (1153)
16 PLN03150 hypothetical protein; 99.3 5.2E-12 1.1E-16 124.3 9.1 110 118-240 420-530 (623)
17 cd00116 LRR_RI Leucine-rich re 99.3 1.2E-12 2.5E-17 118.7 3.6 151 87-239 48-235 (319)
18 PRK15370 E3 ubiquitin-protein 99.3 1.7E-11 3.7E-16 121.8 11.6 152 69-240 202-382 (754)
19 KOG4237 Extracellular matrix p 99.3 2.8E-13 6.2E-18 120.5 -2.1 179 68-248 93-369 (498)
20 PRK15370 E3 ubiquitin-protein 99.2 1.3E-11 2.8E-16 122.7 7.2 89 117-214 284-380 (754)
21 PLN03210 Resistant to P. syrin 99.2 7.3E-11 1.6E-15 124.0 12.8 119 115-236 777-904 (1153)
22 KOG0532 Leucine-rich repeat (L 99.2 4.9E-13 1.1E-17 124.0 -3.4 164 71-244 80-253 (722)
23 KOG0618 Serine/threonine phosp 99.2 1.3E-12 2.7E-17 127.3 -2.0 160 71-237 292-488 (1081)
24 KOG0618 Serine/threonine phosp 99.1 7.1E-13 1.5E-17 128.9 -6.1 146 90-240 241-422 (1081)
25 PRK15387 E3 ubiquitin-protein 99.1 7.2E-11 1.6E-15 117.1 7.5 116 91-221 343-465 (788)
26 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 96.0 4.2 106 115-238 18-126 (175)
27 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3.1E-15 108.5 5.1 163 70-241 120-293 (394)
28 KOG1259 Nischarin, modulator o 99.0 6E-11 1.3E-15 102.6 -0.4 122 114-240 282-414 (490)
29 KOG0532 Leucine-rich repeat (L 98.9 7.7E-11 1.7E-15 109.7 -1.3 143 70-221 102-253 (722)
30 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.5E-14 89.8 5.2 87 136-239 15-102 (175)
31 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.4E-15 100.1 -1.1 123 89-217 283-415 (490)
32 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3E-14 73.6 2.9 58 117-174 2-59 (61)
33 PF13855 LRR_8: Leucine rich r 98.8 2E-09 4.4E-14 72.7 2.7 60 177-236 1-60 (61)
34 COG4886 Leucine-rich repeat (L 98.8 4.1E-09 8.9E-14 98.6 4.2 148 86-240 112-270 (394)
35 KOG3207 Beta-tubulin folding c 98.8 8.6E-10 1.9E-14 99.8 -0.4 149 87-237 143-313 (505)
36 KOG3207 Beta-tubulin folding c 98.7 1.8E-09 3.9E-14 97.8 0.1 152 86-239 168-340 (505)
37 KOG1187 Serine/threonine prote 98.7 2.5E-08 5.4E-13 91.9 5.5 45 277-324 61-107 (361)
38 KOG1909 Ran GTPase-activating 98.7 8.9E-09 1.9E-13 90.9 2.3 163 86-250 88-295 (382)
39 KOG1909 Ran GTPase-activating 98.6 5.1E-09 1.1E-13 92.4 -0.1 174 61-237 92-310 (382)
40 KOG0531 Protein phosphatase 1, 98.4 3.1E-08 6.7E-13 93.3 -1.6 159 70-239 99-269 (414)
41 KOG1859 Leucine-rich repeat pr 98.3 7.6E-09 1.6E-13 99.1 -7.2 121 117-242 165-296 (1096)
42 KOG4658 Apoptotic ATPase [Sign 98.3 2.8E-07 6E-12 93.6 2.8 147 86-238 567-730 (889)
43 KOG2120 SCF ubiquitin ligase, 98.3 2.2E-08 4.8E-13 86.8 -4.5 164 68-235 187-373 (419)
44 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3E-11 54.4 3.3 37 116-153 1-37 (44)
45 KOG0531 Protein phosphatase 1, 98.2 1.6E-07 3.5E-12 88.5 -2.1 99 112-214 91-199 (414)
46 KOG1859 Leucine-rich repeat pr 98.1 5.2E-08 1.1E-12 93.6 -7.1 116 92-214 166-292 (1096)
47 KOG4579 Leucine-rich repeat (L 98.1 1.9E-07 4.1E-12 72.2 -3.0 57 113-171 50-107 (177)
48 KOG4658 Apoptotic ATPase [Sign 98.0 3.4E-06 7.5E-11 85.8 4.2 117 89-208 544-675 (889)
49 KOG2982 Uncharacterized conser 97.9 5.8E-06 1.3E-10 72.0 2.8 149 89-239 70-263 (418)
50 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 50.1 3.5 36 178-214 2-37 (44)
51 KOG4579 Leucine-rich repeat (L 97.9 9.5E-07 2.1E-11 68.4 -2.2 84 86-173 49-132 (177)
52 KOG1644 U2-associated snRNP A' 97.8 2E-05 4.3E-10 65.1 4.5 106 116-235 42-150 (233)
53 KOG2120 SCF ubiquitin ligase, 97.7 1.9E-06 4E-11 75.1 -3.8 123 117-239 186-327 (419)
54 KOG3665 ZYG-1-like serine/thre 97.6 3.8E-05 8.3E-10 76.3 3.0 122 90-215 122-264 (699)
55 PF08263 LRRNT_2: Leucine rich 97.6 7.2E-05 1.6E-09 46.4 3.0 35 24-58 2-43 (43)
56 KOG1644 U2-associated snRNP A' 97.5 0.00016 3.4E-09 59.8 5.1 79 91-174 43-123 (233)
57 COG5238 RNA1 Ran GTPase-activa 97.5 0.0001 2.2E-09 63.8 4.0 127 112-238 88-255 (388)
58 KOG3665 ZYG-1-like serine/thre 97.5 7.6E-05 1.6E-09 74.3 3.3 117 87-207 145-281 (699)
59 COG5238 RNA1 Ran GTPase-activa 97.4 0.00013 2.9E-09 63.0 3.8 152 88-241 28-230 (388)
60 PRK15386 type III secretion pr 97.4 0.00071 1.5E-08 62.7 8.0 65 86-159 48-113 (426)
61 PF13306 LRR_5: Leucine rich r 97.4 0.00081 1.7E-08 52.1 7.2 126 81-227 3-128 (129)
62 KOG2982 Uncharacterized conser 97.3 3.5E-05 7.5E-10 67.3 -1.6 126 114-239 69-238 (418)
63 KOG2739 Leucine-rich acidic nu 97.2 0.00015 3.3E-09 62.2 1.6 61 89-153 42-104 (260)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00022 4.8E-09 61.2 1.9 109 108-232 35-150 (260)
65 PRK15386 type III secretion pr 97.1 0.0013 2.7E-08 61.1 6.7 120 69-212 55-188 (426)
66 PF13306 LRR_5: Leucine rich r 97.0 0.0022 4.8E-08 49.6 6.3 108 110-235 6-113 (129)
67 KOG3653 Transforming growth fa 96.9 0.00086 1.9E-08 62.2 3.6 27 294-324 215-241 (534)
68 PF00560 LRR_1: Leucine Rich R 96.2 0.0018 4E-08 33.7 0.7 18 142-160 2-19 (22)
69 KOG2123 Uncharacterized conser 96.2 0.00035 7.7E-09 60.6 -3.3 61 89-154 40-102 (388)
70 KOG2123 Uncharacterized conser 96.1 0.00041 8.8E-09 60.3 -3.5 77 89-172 18-96 (388)
71 PF00560 LRR_1: Leucine Rich R 95.8 0.0035 7.7E-08 32.6 0.6 21 117-138 1-21 (22)
72 PLN03224 probable serine/threo 95.5 0.012 2.6E-07 56.8 3.6 35 290-324 144-194 (507)
73 KOG2052 Activin A type IB rece 95.4 0.031 6.7E-07 51.8 5.6 26 295-324 217-242 (513)
74 PTZ00284 protein kinase; Provi 95.2 0.014 3E-07 56.0 3.0 38 285-324 123-162 (467)
75 KOG0196 Tyrosine kinase, EPH ( 95.1 0.012 2.6E-07 58.2 1.9 46 278-323 607-664 (996)
76 PLN03225 Serine/threonine-prot 95.0 0.026 5.7E-07 55.5 4.2 34 289-324 130-169 (566)
77 KOG0193 Serine/threonine prote 94.8 0.022 4.8E-07 54.7 2.9 25 295-324 398-422 (678)
78 KOG0473 Leucine-rich repeat pr 94.5 0.0014 3E-08 55.6 -5.2 91 79-174 31-121 (326)
79 KOG0192 Tyrosine kinase specif 94.0 0.053 1.1E-06 50.1 3.5 26 295-324 47-73 (362)
80 KOG0605 NDR and related serine 93.9 0.055 1.2E-06 51.3 3.5 34 289-324 139-174 (550)
81 PF13504 LRR_7: Leucine rich r 93.9 0.029 6.2E-07 27.1 0.9 10 142-151 3-12 (17)
82 smart00090 RIO RIO-like kinase 93.9 0.068 1.5E-06 46.4 3.8 27 295-324 34-62 (237)
83 PTZ00283 serine/threonine prot 93.9 0.048 1E-06 52.7 3.2 28 295-324 38-65 (496)
84 cd05622 STKc_ROCK1 Catalytic d 93.7 0.061 1.3E-06 49.9 3.5 40 283-324 35-76 (371)
85 KOG0663 Protein kinase PITSLRE 93.6 0.036 7.8E-07 49.7 1.6 27 295-323 82-108 (419)
86 cd05621 STKc_ROCK2 Catalytic d 93.6 0.065 1.4E-06 49.7 3.4 33 290-324 42-76 (370)
87 PLN00034 mitogen-activated pro 93.6 0.076 1.6E-06 48.8 3.8 28 295-324 80-107 (353)
88 PTZ00036 glycogen synthase kin 93.5 0.081 1.8E-06 50.3 4.0 28 295-324 72-99 (440)
89 cd05596 STKc_ROCK Catalytic do 93.2 0.057 1.2E-06 50.0 2.4 33 290-324 42-76 (370)
90 KOG4236 Serine/threonine prote 93.0 0.079 1.7E-06 50.4 3.0 28 295-324 570-597 (888)
91 KOG4308 LRR-containing protein 93.0 0.0018 3.9E-08 61.9 -8.0 153 86-240 111-305 (478)
92 KOG0600 Cdc2-related protein k 92.8 0.085 1.8E-06 49.7 2.9 39 275-323 111-149 (560)
93 TIGR01982 UbiB 2-polyprenylphe 92.7 0.13 2.8E-06 48.9 4.0 27 295-324 123-149 (437)
94 cd05104 PTKc_Kit Catalytic dom 92.2 0.14 3.1E-06 47.5 3.6 30 295-324 41-73 (375)
95 KOG0473 Leucine-rich repeat pr 92.2 0.0058 1.3E-07 51.9 -5.0 99 136-250 38-136 (326)
96 PF03109 ABC1: ABC1 family; I 91.8 0.054 1.2E-06 41.6 0.2 30 291-323 12-42 (119)
97 cd05105 PTKc_PDGFR_alpha Catal 91.5 0.19 4.1E-06 47.2 3.6 30 295-324 43-75 (400)
98 cd05106 PTKc_CSF-1R Catalytic 90.9 0.18 4E-06 46.7 2.9 30 295-324 44-76 (374)
99 KOG1025 Epidermal growth facto 90.7 0.21 4.5E-06 50.2 3.1 32 293-324 700-733 (1177)
100 PHA03209 serine/threonine kina 90.7 0.32 6.9E-06 44.8 4.2 32 290-323 65-98 (357)
101 PTZ00426 cAMP-dependent protei 90.6 0.32 7E-06 44.5 4.2 29 295-324 36-64 (340)
102 KOG4308 LRR-containing protein 90.5 0.0034 7.4E-08 60.0 -9.2 124 90-215 144-304 (478)
103 smart00370 LRR Leucine-rich re 90.1 0.22 4.9E-06 26.7 1.7 13 141-153 3-15 (26)
104 smart00369 LRR_TYP Leucine-ric 90.1 0.22 4.9E-06 26.7 1.7 13 141-153 3-15 (26)
105 KOG1947 Leucine rich repeat pr 90.0 0.11 2.4E-06 49.5 0.6 100 88-189 186-307 (482)
106 KOG0694 Serine/threonine prote 89.7 0.38 8.3E-06 47.1 3.9 32 290-323 367-400 (694)
107 KOG0194 Protein tyrosine kinas 89.6 0.34 7.3E-06 46.2 3.5 28 295-323 163-193 (474)
108 smart00369 LRR_TYP Leucine-ric 89.5 0.35 7.6E-06 25.9 2.1 14 177-190 2-15 (26)
109 smart00370 LRR Leucine-rich re 89.5 0.35 7.6E-06 25.9 2.1 14 177-190 2-15 (26)
110 KOG1166 Mitotic checkpoint ser 89.3 0.34 7.4E-06 50.0 3.4 26 295-323 704-729 (974)
111 KOG0667 Dual-specificity tyros 89.2 0.42 9.1E-06 46.4 3.8 28 295-324 192-219 (586)
112 PRK04750 ubiB putative ubiquin 89.1 0.49 1.1E-05 46.1 4.2 29 293-324 122-152 (537)
113 PHA03212 serine/threonine kina 88.5 0.52 1.1E-05 44.1 3.9 27 295-323 98-124 (391)
114 cd05107 PTKc_PDGFR_beta Cataly 88.4 0.48 1E-05 44.5 3.6 30 295-324 43-75 (401)
115 KOG0577 Serine/threonine prote 87.9 0.38 8.3E-06 46.6 2.6 27 295-323 32-58 (948)
116 KOG1035 eIF-2alpha kinase GCN2 86.9 0.28 6.1E-06 51.1 1.2 36 287-324 475-512 (1351)
117 KOG3864 Uncharacterized conser 86.9 0.14 3.1E-06 42.7 -0.8 34 118-151 103-136 (221)
118 cd05055 PTKc_PDGFR Catalytic d 86.8 0.58 1.3E-05 41.8 3.1 30 295-324 41-73 (302)
119 PHA03211 serine/threonine kina 86.2 0.78 1.7E-05 44.0 3.7 27 295-323 175-201 (461)
120 PF13516 LRR_6: Leucine Rich r 85.8 0.15 3.3E-06 26.8 -0.8 12 179-190 4-15 (24)
121 KOG1095 Protein tyrosine kinas 84.6 0.79 1.7E-05 47.6 3.1 30 293-323 696-729 (1025)
122 KOG0032 Ca2+/calmodulin-depend 84.5 1 2.2E-05 42.0 3.5 28 295-324 41-68 (382)
123 KOG1165 Casein kinase (serine/ 84.1 0.81 1.8E-05 41.3 2.5 27 295-323 34-60 (449)
124 KOG0574 STE20-like serine/thre 83.5 0.14 3E-06 45.4 -2.4 27 295-323 39-65 (502)
125 KOG1026 Nerve growth factor re 83.4 0.23 5.1E-06 49.6 -1.3 30 294-323 491-523 (774)
126 smart00364 LRR_BAC Leucine-ric 82.5 0.76 1.6E-05 24.8 1.1 17 141-158 3-19 (26)
127 PHA03207 serine/threonine kina 81.5 1.7 3.7E-05 40.5 3.8 30 295-324 98-127 (392)
128 KOG0615 Serine/threonine prote 81.2 1.7 3.6E-05 40.4 3.5 28 295-324 178-205 (475)
129 KOG1947 Leucine rich repeat pr 78.1 0.94 2E-05 43.1 0.9 98 115-212 187-306 (482)
130 COG0661 AarF Predicted unusual 76.8 1.8 3.9E-05 42.0 2.4 29 292-323 127-156 (517)
131 KOG0581 Mitogen-activated prot 76.0 4.4 9.5E-05 37.0 4.4 38 280-324 75-112 (364)
132 KOG0578 p21-activated serine/t 75.5 2.8 6E-05 40.3 3.2 28 295-324 279-306 (550)
133 PTZ00267 NIMA-related protein 75.4 3.5 7.6E-05 39.6 4.1 28 295-324 73-101 (478)
134 smart00365 LRR_SD22 Leucine-ri 75.3 2.4 5.2E-05 22.9 1.6 13 141-153 3-15 (26)
135 KOG1006 Mitogen-activated prot 74.7 1.1 2.5E-05 39.2 0.5 27 296-324 71-97 (361)
136 KOG3763 mRNA export factor TAP 73.6 1.9 4E-05 41.5 1.6 37 114-150 216-254 (585)
137 KOG4341 F-box protein containi 73.0 1.5 3.2E-05 40.8 0.7 37 200-236 400-437 (483)
138 KOG0658 Glycogen synthase kina 72.6 2.5 5.4E-05 38.5 2.1 18 295-312 30-47 (364)
139 KOG0585 Ca2+/calmodulin-depend 71.8 4.4 9.5E-05 38.5 3.5 28 295-324 103-130 (576)
140 KOG4257 Focal adhesion tyrosin 71.2 3.3 7.1E-05 40.8 2.6 29 295-323 395-425 (974)
141 KOG0584 Serine/threonine prote 70.7 1.4 3.1E-05 42.8 0.1 26 293-320 44-69 (632)
142 KOG0199 ACK and related non-re 69.8 2.7 5.9E-05 41.8 1.8 29 295-323 116-145 (1039)
143 KOG3864 Uncharacterized conser 69.1 1.1 2.5E-05 37.4 -0.8 28 100-127 109-136 (221)
144 PHA03210 serine/threonine kina 67.5 2.8 6.1E-05 40.6 1.4 21 290-310 147-169 (501)
145 smart00368 LRR_RI Leucine rich 66.5 11 0.00023 20.5 3.1 17 225-241 2-18 (28)
146 KOG0666 Cyclin C-dependent kin 66.2 1.7 3.6E-05 39.1 -0.4 16 295-310 30-45 (438)
147 PRK09605 bifunctional UGMP fam 66.0 6 0.00013 38.7 3.4 18 294-311 338-355 (535)
148 KOG0611 Predicted serine/threo 64.3 3.4 7.4E-05 38.5 1.2 28 295-324 59-86 (668)
149 KOG1167 Serine/threonine prote 63.7 2.5 5.3E-05 39.2 0.2 29 295-323 42-71 (418)
150 KOG0586 Serine/threonine prote 63.7 7.3 0.00016 37.9 3.3 28 295-324 62-89 (596)
151 KOG0664 Nemo-like MAPK-related 63.3 3.1 6.7E-05 36.6 0.7 28 294-323 58-85 (449)
152 KOG3763 mRNA export factor TAP 63.2 4.7 0.0001 38.9 1.9 14 202-215 271-284 (585)
153 KOG0197 Tyrosine kinases [Sign 63.1 5.7 0.00012 37.8 2.4 28 294-324 211-238 (468)
154 KOG4721 Serine/threonine prote 62.6 4.7 0.0001 39.3 1.8 33 281-322 121-153 (904)
155 KOG0690 Serine/threonine prote 61.7 4.9 0.00011 36.4 1.7 32 290-323 167-200 (516)
156 KOG0592 3-phosphoinositide-dep 61.2 4.8 0.0001 38.8 1.6 28 294-323 78-105 (604)
157 KOG1235 Predicted unusual prot 61.1 8.3 0.00018 37.6 3.2 42 279-323 138-192 (538)
158 KOG0582 Ste20-like serine/thre 59.5 11 0.00025 35.5 3.7 28 295-324 32-59 (516)
159 COG0478 RIO-like serine/threon 59.4 11 0.00023 33.6 3.3 30 291-323 93-122 (304)
160 KOG0986 G protein-coupled rece 59.4 2.8 6.2E-05 39.5 -0.2 25 287-311 180-207 (591)
161 KOG4279 Serine/threonine prote 59.2 8.5 0.00018 38.6 2.9 28 295-324 581-608 (1226)
162 KOG0984 Mitogen-activated prot 58.3 6.2 0.00013 33.5 1.6 27 295-323 52-78 (282)
163 PRK10359 lipopolysaccharide co 57.7 13 0.00027 32.2 3.5 40 281-324 19-62 (232)
164 TIGR00864 PCC polycystin catio 57.6 6.8 0.00015 45.0 2.2 37 207-243 1-37 (2740)
165 PF13956 Ibs_toxin: Toxin Ibs, 56.6 4.8 0.00011 19.5 0.4 15 2-16 1-15 (19)
166 KOG0612 Rho-associated, coiled 54.9 4 8.7E-05 42.8 -0.0 32 290-323 74-107 (1317)
167 KOG0696 Serine/threonine prote 54.2 6 0.00013 37.0 1.0 38 284-323 343-381 (683)
168 KOG1989 ARK protein kinase fam 54.0 13 0.00029 37.5 3.4 27 295-323 43-69 (738)
169 KOG4341 F-box protein containi 53.2 6 0.00013 37.0 0.8 100 87-188 317-437 (483)
170 KOG0200 Fibroblast/platelet-de 51.7 16 0.00034 36.5 3.6 31 294-324 301-336 (609)
171 KOG0598 Ribosomal protein S6 k 50.0 9.8 0.00021 34.8 1.6 16 295-310 31-46 (357)
172 KOG1152 Signal transduction se 45.8 21 0.00046 35.0 3.2 28 295-324 567-594 (772)
173 KOG1094 Discoidin domain recep 41.8 23 0.0005 34.8 2.8 27 294-323 543-569 (807)
174 KOG0607 MAP kinase-interacting 39.7 15 0.00033 33.3 1.2 39 281-324 73-111 (463)
175 KOG1151 Tousled-like protein k 39.0 5.6 0.00012 37.5 -1.6 27 295-323 469-495 (775)
176 TIGR00864 PCC polycystin catio 37.8 23 0.0005 41.1 2.4 29 146-174 1-29 (2740)
177 cd07875 STKc_JNK1 Catalytic do 36.5 38 0.00082 30.9 3.4 17 295-311 30-46 (364)
178 KOG1027 Serine/threonine prote 36.0 15 0.00032 37.4 0.6 25 295-323 515-540 (903)
179 PRK01723 3-deoxy-D-manno-octul 34.3 54 0.0012 28.3 3.8 26 295-324 37-63 (239)
180 smart00367 LRR_CC Leucine-rich 34.2 28 0.0006 18.3 1.3 11 116-126 2-12 (26)
181 KOG0579 Ste20-like serine/thre 33.3 6.9 0.00015 38.7 -2.1 16 296-311 39-54 (1187)
182 KOG2270 Serine/threonine prote 33.1 47 0.001 31.1 3.3 30 292-324 147-176 (520)
183 COG1718 RIO1 Serine/threonine 32.9 52 0.0011 28.9 3.4 42 280-324 34-80 (268)
184 KOG4645 MAPKKK (MAP kinase kin 32.7 19 0.00041 38.7 0.8 28 295-324 1241-1268(1509)
185 KOG0695 Serine/threonine prote 31.9 18 0.00038 33.0 0.4 31 291-323 250-282 (593)
186 KOG0610 Putative serine/threon 29.5 60 0.0013 30.5 3.3 28 295-324 83-110 (459)
187 KOG0616 cAMP-dependent protein 29.2 48 0.001 29.9 2.5 27 295-323 50-76 (355)
188 KOG0983 Mitogen-activated prot 28.7 58 0.0013 29.1 3.0 26 296-323 99-124 (391)
189 KOG0670 U4/U6-associated splic 28.2 46 0.001 32.4 2.4 26 297-324 440-465 (752)
190 KOG4278 Protein tyrosine kinas 26.0 41 0.00089 33.5 1.7 27 295-323 273-299 (1157)
191 cd06635 STKc_TAO1 Catalytic do 25.9 73 0.0016 28.3 3.3 17 295-311 31-47 (317)
192 PF08139 LPAM_1: Prokaryotic m 25.0 1E+02 0.0022 16.5 2.4 15 3-17 8-22 (25)
193 KOG0671 LAMMER dual specificit 23.8 31 0.00068 31.9 0.5 27 295-323 95-121 (415)
194 PF13095 FTA2: Kinetochore Sim 21.2 1.3E+02 0.0028 25.5 3.6 37 278-323 29-68 (207)
195 KOG4258 Insulin/growth factor 20.7 48 0.001 34.0 1.1 16 295-310 1000-1015(1025)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=6.2e-25 Score=227.08 Aligned_cols=209 Identities=36% Similarity=0.588 Sum_probs=144.2
Q ss_pred CHHHHHHHHcC------CCCCCCCCCCCCCCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEE
Q 045233 23 IQLETKALLDT------GWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLR 96 (325)
Q Consensus 23 ~~~~~~~ll~~------~~~~~~~W~~~~~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~ 96 (325)
.+.|+.+|+.+ +.....+| +...+||.|.||+|+..++|+.+++....+... ....+..+++|+.|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w--~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~-----~~~~~~~l~~L~~L~ 99 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNW--NSSADVCLWQGITCNNSSRVVSIDLSGKNISGK-----ISSAIFRLPYIQTIN 99 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCC--CCCCCCCcCcceecCCCCcEEEEEecCCCcccc-----CChHHhCCCCCCEEE
Confidence 55788899864 23346778 456789999999999888999998875433221 122344455555555
Q ss_pred eccccCcCCCCCcccc-----------------------cCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCC
Q 045233 97 IQAYYYGFTGSIPSDI-----------------------SALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT 153 (325)
Q Consensus 97 l~~~~n~~~~~~p~~l-----------------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 153 (325)
+ ++|.+.+.+|..+ ..+++|++|++++|.+++.+|..++++++|++|++++|.+.
T Consensus 100 L--s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 100 L--SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred C--CCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 5 4444444444332 23455566666666666666777777777777777777777
Q ss_pred CcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCccc
Q 045233 154 GPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNK 222 (325)
Q Consensus 154 ~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 222 (325)
+.+|..+.++++|++|++++| ++++|++|++++|++++.+|..++++++|++|++++|.+++.+|..++
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 777777777777777777766 345777777887777777777777788888888888887777777778
Q ss_pred CCCCCcEEEccCCCCCch
Q 045233 223 QLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 223 ~l~~L~~L~l~~N~~~~~ 240 (325)
.+++|+.|++++|.+.+.
T Consensus 258 ~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred CCCCCCEEECcCCeeecc
Confidence 888888888888776653
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=2.5e-24 Score=222.53 Aligned_cols=234 Identities=26% Similarity=0.346 Sum_probs=150.9
Q ss_pred ccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCC
Q 045233 85 NFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT 164 (325)
Q Consensus 85 ~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 164 (325)
.+..++.|+.|++ ++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|++++.+|..+..++
T Consensus 423 ~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~ 499 (968)
T PLN00113 423 EFTKLPLVYFLDI--SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS 499 (968)
T ss_pred hHhcCCCCCEEEC--cCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh
Confidence 3455556666666 5566666555555556666666666666665555543 346677777777777777777788888
Q ss_pred CCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEcc
Q 045233 165 NLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLS 233 (325)
Q Consensus 165 ~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 233 (325)
+|+.|++++| .+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.++++
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 8888888877 45678888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCchH----------------------------------------------------H-HHHHHHHHHHHHhhcCcc
Q 045233 234 PNKGLGSN----------------------------------------------------F-IIVLACLLAVKRKYKKPI 260 (325)
Q Consensus 234 ~N~~~~~~----------------------------------------------------~-~~~~~~~~~~~~~~~~~~ 260 (325)
+|++.+.. . ++++++.+.++++++...
T Consensus 580 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (968)
T PLN00113 580 HNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLE 659 (968)
T ss_pred CCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 87764310 0 000111111222222111
Q ss_pred ccccc--cCccceeeee-cCCccccHHHHHHHhcCCcceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 261 LKANA--TNRIDVFSIW-NYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 261 ~~~~~--~~~~~~~~~~-~~~~~~~~~~l~~~t~nf~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+... ...+....+. ...+.++++++..... ...+||+|+||.||+|+.. .+|..||||..
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ig~G~~g~Vy~~~~~--~~~~~vavK~~ 723 (968)
T PLN00113 660 LKRVENEDGTWELQFFDSKVSKSITINDILSSLK-EENVISRGKKGASYKGKSI--KNGMQFVVKEI 723 (968)
T ss_pred ccccccccccccccccccccchhhhHHHHHhhCC-cccEEccCCCeeEEEEEEC--CCCcEEEEEEc
Confidence 11100 0111111111 1123467777765432 3478999999999999985 78999999964
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=2.6e-18 Score=158.80 Aligned_cols=167 Identities=23% Similarity=0.226 Sum_probs=96.2
Q ss_pred ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeeccc
Q 045233 70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN 149 (325)
Q Consensus 70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 149 (325)
.+|++.|.+..++...|..-.++++|+| ++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~L--a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNL--ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEee--ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 3455555555555555554455555555 55555444444455555555555555555533334444455555555555
Q ss_pred Cc------------------------CCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCc
Q 045233 150 NN------------------------LTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIP 194 (325)
Q Consensus 150 N~------------------------l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p 194 (325)
|+ +...-...|..+.++++|+|+.| +++.|+.|+||+|.|...-+
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 54 44333344555555555555555 45667777777777776666
Q ss_pred hhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 195 GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
+.+...++|++|+|++|+|+...+.+|..+..|+.|+|+.|.+.
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 67777777777777777777666666666666777777766654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=7.2e-18 Score=155.95 Aligned_cols=165 Identities=21% Similarity=0.217 Sum_probs=118.7
Q ss_pred cCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcC
Q 045233 73 VDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNL 152 (325)
Q Consensus 73 ~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 152 (325)
+..|.+..+....|.++.++++|+| ..|++...-...+.+++.|+.|++|+|.|....++.+...++|++|+|++|+|
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L--~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNL--ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhhcCcccccCcceeeecccceeec--ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 3444455555555666666666666 66666655555666777777777777777777777777777888888888888
Q ss_pred CCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCc---hhhhCCCCCCEEECCCCcCCCCCC
Q 045233 153 TGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIP---GELTELSRPDCLSLSANKLSGPVP 218 (325)
Q Consensus 153 ~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p 218 (325)
+...+..|..+..|+.|+|++| .+++|+.|||++|.++..+. ..|.++++|+.|++.+|+|.....
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence 7666667777777777777777 45678888888888776543 356778888888888888885555
Q ss_pred CcccCCCCCcEEEccCCCCCc
Q 045233 219 FSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 219 ~~~~~l~~L~~L~l~~N~~~~ 239 (325)
.+|..+.+|++|+|.+|.+..
T Consensus 410 rAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred hhhccCcccceecCCCCccee
Confidence 678888888888888877643
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=2e-17 Score=146.70 Aligned_cols=168 Identities=24% Similarity=0.217 Sum_probs=130.9
Q ss_pred cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEeccc-CCCCCCCchhhcCCcccceeeccc
Q 045233 71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSL-NRLSGTIPSNIGNLRNLVHLDLGN 149 (325)
Q Consensus 71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~ 149 (325)
++++.|.+..+++..|..+++|+.||| ++|+++.+-|++|.++.+|.+|-+-+ |+|+......|+++..|+.|.+.-
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdL--S~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDL--SKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecc--cccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 455689999999999999999999999 99999999999999999988776655 999966667788888888888888
Q ss_pred CcCCCcCchhccCCCCCcEEEcCcC-------------------------------------------------------
Q 045233 150 NNLTGPIPSTLARLTNLKYLDLKVT------------------------------------------------------- 174 (325)
Q Consensus 150 N~l~~~~p~~~~~l~~L~~L~l~~n------------------------------------------------------- 174 (325)
|++.-...+.|..+++|..|.+-.|
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 8887666667777777766666544
Q ss_pred ------------------------------------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCc
Q 045233 175 ------------------------------------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANK 212 (325)
Q Consensus 175 ------------------------------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~ 212 (325)
.+++|+.|+|++|+++++.+.+|.++..+++|.|..|+
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 56799999999999998878777777666666666666
Q ss_pred CCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 213 LSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 213 l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
|.......|..+..|+.|+|++|++++.
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEE
Confidence 6544444555666666666666666554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=2.8e-18 Score=136.30 Aligned_cols=148 Identities=28% Similarity=0.453 Sum_probs=75.4
Q ss_pred cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233 71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150 (325)
Q Consensus 71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 150 (325)
+.++.|.+..++. .++.+.+|+.|++ .+|++. .+|.+++.+++|+.|+++-|++. ..|..|+.++.|+.|||++|
T Consensus 38 LtLSHNKl~~vpp-nia~l~nlevln~--~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 38 LTLSHNKLTVVPP-NIAELKNLEVLNL--SNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhcccCceeecCC-cHHHhhhhhhhhc--ccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccc
Confidence 3344444444433 2444555555555 444443 34445555555555555555554 45555555555555555555
Q ss_pred cCC-CcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcE
Q 045233 151 NLT-GPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYI 229 (325)
Q Consensus 151 ~l~-~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 229 (325)
++. ..+|..|..++.|+. |+|++|.+. .+|..++.+++|+.|.+.+|.+- ..|..++.++.|+.
T Consensus 113 nl~e~~lpgnff~m~tlra-------------lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre 177 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRA-------------LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE 177 (264)
T ss_pred ccccccCCcchhHHHHHHH-------------HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence 554 234444444444444 455555555 45555555555555555555554 44555555555555
Q ss_pred EEccCCCCC
Q 045233 230 VRLSPNKGL 238 (325)
Q Consensus 230 L~l~~N~~~ 238 (325)
|++.+|+++
T Consensus 178 lhiqgnrl~ 186 (264)
T KOG0617|consen 178 LHIQGNRLT 186 (264)
T ss_pred Hhcccceee
Confidence 555555544
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=4.1e-15 Score=146.12 Aligned_cols=152 Identities=30% Similarity=0.482 Sum_probs=110.6
Q ss_pred cCCCHHHHHHHHcCC--CCC--CCCCCCCCCCCCc-----cceeeEeCCCCCeeEeeccccccCCccccccCccccCCCC
Q 045233 20 FSPIQLETKALLDTG--WWN--SSFWMANYSSDHC-----KWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFP 90 (325)
Q Consensus 20 ~~~~~~~~~~ll~~~--~~~--~~~W~~~~~~~~C-----~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~ 90 (325)
.+..+.|..+|+..+ +.. ..+|.+ |+| .|.||.|+.... ....
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~~~W~g----~~C~p~~~~w~Gv~C~~~~~------------------------~~~~ 418 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLRFGWNG----DPCVPQQHPWSGADCQFDST------------------------KGKW 418 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcccCCCCC----CCCCCcccccccceeeccCC------------------------CCce
Confidence 344566778887532 221 237842 444 799999953211 0011
Q ss_pred CCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEE
Q 045233 91 NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLD 170 (325)
Q Consensus 91 ~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 170 (325)
.++.|+| ++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.
T Consensus 419 ~v~~L~L--~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~-- 494 (623)
T PLN03150 419 FIDGLGL--DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI-- 494 (623)
T ss_pred EEEEEEC--CCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE--
Confidence 3466777 788888888888889999999999999998889988999999999999999999888888877665544
Q ss_pred cCcCCCCCCcEEEccCCcCCCCCchhhhCC-CCCCEEECCCCcCC
Q 045233 171 LKVTSMKNLTWLDISNNKIEGSIPGELTEL-SRPDCLSLSANKLS 214 (325)
Q Consensus 171 l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~ 214 (325)
|+|++|+++|.+|..+..+ .++..+++.+|...
T Consensus 495 -----------L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 495 -----------LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred -----------EECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 5677788888888887764 46678888888744
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.2e-17 Score=131.20 Aligned_cols=155 Identities=26% Similarity=0.464 Sum_probs=128.8
Q ss_pred eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCC-CCCchhhcCCccccee
Q 045233 67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLS-GTIPSNIGNLRNLVHL 145 (325)
Q Consensus 67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L 145 (325)
+++.+++..|.+..++. .++.+++|+.|++ .-|++. .+|..|+.++.|+.||+.+|++. ..+|..|..++.|+.|
T Consensus 57 nlevln~~nnqie~lp~-~issl~klr~lnv--gmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEELPT-SISSLPKLRILNV--GMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhhhhcccchhhhcCh-hhhhchhhhheec--chhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence 56677888898888876 5889999999999 666654 68999999999999999999997 5789999999999999
Q ss_pred ecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCC
Q 045233 146 DLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLS 225 (325)
Q Consensus 146 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 225 (325)
+|+.|.+. .+|+.++++++|+.| .+.+|.+- .+|..++.++.|++|.+.+|.++ .+|..++.+.
T Consensus 133 yl~dndfe-~lp~dvg~lt~lqil-------------~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 133 YLGDNDFE-ILPPDVGKLTNLQIL-------------SLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred HhcCCCcc-cCChhhhhhcceeEE-------------eeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 99999999 899999988777665 55566666 68999999999999999999999 6666666654
Q ss_pred ---CCcEEEccCCCCCchH
Q 045233 226 ---TMYIVRLSPNKGLGSN 241 (325)
Q Consensus 226 ---~L~~L~l~~N~~~~~~ 241 (325)
+-+.+.+..|++....
T Consensus 197 l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 197 LVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred hhhhHHHHhhhhCCCCChH
Confidence 3356677888887543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=3.9e-16 Score=145.77 Aligned_cols=147 Identities=27% Similarity=0.372 Sum_probs=88.5
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 165 (325)
+-.+..|+.||| ++|.+. +.|..+..-+++..|+||+|+|..+.-+.|-+++.|-+||||+|++. .+|+.+..+..
T Consensus 99 iF~l~dLt~lDL--ShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 99 IFRLKDLTILDL--SHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSM 174 (1255)
T ss_pred hcccccceeeec--chhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhh
Confidence 445666666666 566554 45556666666666666666666322233556666666666666666 56666666666
Q ss_pred CcEEEcCcC------------------------------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECC
Q 045233 166 LKYLDLKVT------------------------------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLS 209 (325)
Q Consensus 166 L~~L~l~~n------------------------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 209 (325)
|+.|.|++| .+.+|..+|+|.|.+. .+|+.+..+++|+.|+|+
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccC
Confidence 666666666 2345666666667666 666677777777777777
Q ss_pred CCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 210 ANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 210 ~N~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
+|+|+ .+....+...+|++|+++.|+++
T Consensus 254 ~N~it-eL~~~~~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 254 GNKIT-ELNMTEGEWENLETLNLSRNQLT 281 (1255)
T ss_pred cCcee-eeeccHHHHhhhhhhccccchhc
Confidence 77666 22333344444555555555443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.56 E-value=7.3e-17 Score=143.44 Aligned_cols=179 Identities=25% Similarity=0.325 Sum_probs=153.1
Q ss_pred ccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCC
Q 045233 50 CKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLS 129 (325)
Q Consensus 50 C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~ 129 (325)
|+.....|-..+--..++++.++...|.+..++. .+..+..|..+++ .+|.+....|..+. ++.|++||...|-++
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~-~~~~~~~l~~l~~--~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQISSLPE-DMVNLSKLSKLDL--EGNKLKALPENHIA-MKRLKHLDCNSNLLE 196 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccccccCch-HHHHHHHHHHhhc--cccchhhCCHHHHH-HHHHHhcccchhhhh
Confidence 4443333333334455678888899999888876 4667888899999 88988876665555 999999999999998
Q ss_pred CCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhh
Q 045233 130 GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELT 198 (325)
Q Consensus 130 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~ 198 (325)
.+|+.++.+.+|+.|+|..|++. .+| .|.++..|++|+++.| +++++..|||.+|+++ ..|+.+.
T Consensus 197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 89999999999999999999999 788 7999999999999988 6789999999999999 8899999
Q ss_pred CCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 199 ELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
-+.+|.+||+++|.|+ ..|.+++++ .|+.|.+.||++-
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 9999999999999999 568889999 9999999999974
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.54 E-value=2e-16 Score=147.63 Aligned_cols=162 Identities=29% Similarity=0.418 Sum_probs=125.4
Q ss_pred cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCC---------------------
Q 045233 71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLS--------------------- 129 (325)
Q Consensus 71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~--------------------- 129 (325)
+++++|.+..++...|.++..|-.||| ++|++. .+|+.+..+..|++|+|++|.+.
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDL--S~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDL--SNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhcc--ccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence 567788888888888888888888999 777765 56777777888888888887643
Q ss_pred ----CCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCC----------CCCcEEEccCCcCCCCCch
Q 045233 130 ----GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM----------KNLTWLDISNNKIEGSIPG 195 (325)
Q Consensus 130 ----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l----------~~L~~L~Ls~n~l~~~~p~ 195 (325)
..+|.++..+.+|..+|+|.|++. .+|+.+.++.+|+.|+|++|.+ .+|+.|++|+|+++ .+|+
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchH
Confidence 235666777788888899999988 8888888999999999999844 36788899999988 7888
Q ss_pred hhhCCCCCCEEECCCCcCCC-CCCCcccCCCCCcEEEccCCCC
Q 045233 196 ELTELSRPDCLSLSANKLSG-PVPFSNKQLSTMYIVRLSPNKG 237 (325)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~N~~ 237 (325)
++..+++|+.|.+.+|+++- -+|..++++..|+++..++|.+
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 88888888888888888763 3566666666666665555554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=5.4e-15 Score=131.68 Aligned_cols=98 Identities=31% Similarity=0.474 Sum_probs=78.9
Q ss_pred cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCccc-ccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSD-ISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
..+++..|.+..++ .|.+++.|.+|.+ ..|.+. .+|.+ ...++++..||+..|++. +.|+.+.-+.+|++||+
T Consensus 209 ~~LyL~~Nki~~lP--ef~gcs~L~Elh~--g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 209 ELLYLRRNKIRFLP--EFPGCSLLKELHV--GENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDL 282 (565)
T ss_pred HHHHhhhcccccCC--CCCccHHHHHHHh--cccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcc
Confidence 34566677777777 4788888888888 566555 44544 458899999999999998 88999999999999999
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcC
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVT 174 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n 174 (325)
|+|.++ .+|.+++++ +|+.|.+.+|
T Consensus 283 SNN~is-~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 283 SNNDIS-SLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred cCCccc-cCCcccccc-eeeehhhcCC
Confidence 999999 678889998 8999988887
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=1.6e-12 Score=128.72 Aligned_cols=75 Identities=28% Similarity=0.220 Sum_probs=58.6
Q ss_pred CCCcEEEcCcCCC-------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233 164 TNLKYLDLKVTSM-------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236 (325)
Q Consensus 164 ~~L~~L~l~~n~l-------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 236 (325)
.+|+.|++++|.+ ++|+.|++++|+++ .+|.. ..+|+.|++++|+|+ .+|..+..+++|..+++++|+
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cccceEEecCCcccCCCCcccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 3577788877743 35778888888888 45643 246778899999998 678889999999999999999
Q ss_pred CCchHHH
Q 045233 237 GLGSNFI 243 (325)
Q Consensus 237 ~~~~~~~ 243 (325)
+++....
T Consensus 457 Ls~~~~~ 463 (788)
T PRK15387 457 LSERTLQ 463 (788)
T ss_pred CCchHHH
Confidence 9976544
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=3.2e-13 Score=122.37 Aligned_cols=151 Identities=25% Similarity=0.261 Sum_probs=81.3
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCc---CCEEecccCCCCC----CCchhhcCC-cccceeecccCcCCCc--
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSK---LQLLDLSLNRLSG----TIPSNIGNL-RNLVHLDLGNNNLTGP-- 155 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~---L~~L~Ls~n~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~-- 155 (325)
+..+++|+.|++ ++|.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++.
T Consensus 77 l~~~~~L~~L~l--~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 77 LTKGCGLQELDL--SDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHhcCceeEEEc--cCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 444566666666 566665544444444433 6666666666652 222334444 5666666666666632
Q ss_pred --CchhccCCCCCcEEEcCcCCC---------------CCCcEEEccCCcCCCCC----chhhhCCCCCCEEECCCCcCC
Q 045233 156 --IPSTLARLTNLKYLDLKVTSM---------------KNLTWLDISNNKIEGSI----PGELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 156 --~p~~~~~l~~L~~L~l~~n~l---------------~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~ 214 (325)
++..+..+++|+.|++++|.+ ++|++|++++|.+++.. +..+..+++|++|++++|+++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 223445555666666666632 25666666666665332 233445566666666666665
Q ss_pred CCCCCccc-----CCCCCcEEEccCCCCC
Q 045233 215 GPVPFSNK-----QLSTMYIVRLSPNKGL 238 (325)
Q Consensus 215 ~~~p~~~~-----~l~~L~~L~l~~N~~~ 238 (325)
+.....+. ..+.|+.|++++|.++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 42111111 1356666666666655
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.31 E-value=1.9e-11 Score=128.33 Aligned_cols=99 Identities=22% Similarity=0.256 Sum_probs=58.2
Q ss_pred cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233 71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150 (325)
Q Consensus 71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 150 (325)
+++..+.+..++. .+..+++|+.|++ +++...+.+| .++.+++|++|++++|.....+|..+.++++|+.|++++|
T Consensus 616 L~L~~s~l~~L~~-~~~~l~~Lk~L~L--s~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 616 LQMQGSKLEKLWD-GVHSLTGLRNIDL--RGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred EECcCcccccccc-ccccCCCCCEEEC--CCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 4444444444433 2455677777777 5554444555 3666677777777776655566777777777777777765
Q ss_pred cCCCcCchhccCCCCCcEEEcCcC
Q 045233 151 NLTGPIPSTLARLTNLKYLDLKVT 174 (325)
Q Consensus 151 ~l~~~~p~~~~~l~~L~~L~l~~n 174 (325)
.....+|..+ ++++|+.|++++|
T Consensus 692 ~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 692 ENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCcCccCCcC-CCCCCCEEeCCCC
Confidence 4444555543 4555555555544
No 16
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=5.2e-12 Score=124.34 Aligned_cols=110 Identities=35% Similarity=0.526 Sum_probs=92.9
Q ss_pred CCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhh
Q 045233 118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGEL 197 (325)
Q Consensus 118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~ 197 (325)
++.|+|++|.+.+.+|..+..+++|+.|+|++|+++|.+|+.+..+++| +.|+|++|++++.+|+.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L-------------~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL-------------EVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCC-------------CEEECCCCCCCCCCchHH
Confidence 6778888888888888888888888888888888888888877766554 556788899999999999
Q ss_pred hCCCCCCEEECCCCcCCCCCCCcccCC-CCCcEEEccCCCCCch
Q 045233 198 TELSRPDCLSLSANKLSGPVPFSNKQL-STMYIVRLSPNKGLGS 240 (325)
Q Consensus 198 ~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~l~~N~~~~~ 240 (325)
+++++|+.|+|++|++++.+|..++.. .++..+++.+|+..|.
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 999999999999999999999887764 4677888988876553
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=1.2e-12 Score=118.70 Aligned_cols=151 Identities=25% Similarity=0.258 Sum_probs=74.4
Q ss_pred CCCCCCCEEEeccccCcCCC------CCcccccCCCcCCEEecccCCCCCCCchhhcCCcc---cceeecccCcCCC---
Q 045233 87 SCFPNLESLRIQAYYYGFTG------SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRN---LVHLDLGNNNLTG--- 154 (325)
Q Consensus 87 ~~l~~L~~L~l~~~~n~~~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~--- 154 (325)
...++++++++ +++.+.+ .++..+..+++|++|++++|.+.+..+..+..+.+ |++|++++|++++
T Consensus 48 ~~~~~l~~l~l--~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 48 RPQPSLKELCL--SLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred hhCCCceEEec--cccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence 34455555555 4444331 12233444556666666666555444444444433 6666666665552
Q ss_pred -cCchhccCC-CCCcEEEcCcCCC---------------CCCcEEEccCCcCCCC----CchhhhCCCCCCEEECCCCcC
Q 045233 155 -PIPSTLARL-TNLKYLDLKVTSM---------------KNLTWLDISNNKIEGS----IPGELTELSRPDCLSLSANKL 213 (325)
Q Consensus 155 -~~p~~~~~l-~~L~~L~l~~n~l---------------~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l 213 (325)
.+...+..+ ++|+.|++++|.+ ++|++|++++|.+++. ++..+..+++|+.|++++|.+
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 122233444 5566666655522 2456666666655532 222334445566666666655
Q ss_pred CCC----CCCcccCCCCCcEEEccCCCCCc
Q 045233 214 SGP----VPFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 214 ~~~----~p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
++. ++..+..+++|+.|++++|++..
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 432 12233445556666666665543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=1.7e-11 Score=121.85 Aligned_cols=152 Identities=25% Similarity=0.372 Sum_probs=84.6
Q ss_pred cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233 69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG 148 (325)
Q Consensus 69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 148 (325)
..++++.|.+..++... +++|+.|++ ++|.+. .+|..+. ++|+.|++++|.+. .+|..+. .+|++|+++
T Consensus 202 ~~L~Ls~N~LtsLP~~l---~~nL~~L~L--s~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 202 TTLILDNNELKSLPENL---QGNIKTLYA--NSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred cEEEecCCCCCcCChhh---ccCCCEEEC--CCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 33444555555544322 246677777 666655 3444332 34566666666655 4454432 355666666
Q ss_pred cCcCCCcCchhccCCCCCcEEEcCcCCC-----------------------------CCCcEEEccCCcCCCCCchhhhC
Q 045233 149 NNNLTGPIPSTLARLTNLKYLDLKVTSM-----------------------------KNLTWLDISNNKIEGSIPGELTE 199 (325)
Q Consensus 149 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l-----------------------------~~L~~L~Ls~n~l~~~~p~~~~~ 199 (325)
+|+++ .+|..+. ++|+.|++++|++ ++|+.|++++|.+++ +|..+.
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~- 345 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP- 345 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc-
Confidence 66665 3444332 3555555555522 245555555555553 443332
Q ss_pred CCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 200 LSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 200 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
++|+.|++++|+|+ .+|..+ .++|+.|++++|.+...
T Consensus 346 -~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 346 -PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL 382 (754)
T ss_pred -CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC
Confidence 57788888888877 455544 25788888888887643
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=2.8e-13 Score=120.54 Aligned_cols=179 Identities=25% Similarity=0.243 Sum_probs=134.5
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEecccc-CcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCccc----
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYY-YGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNL---- 142 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~-n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L---- 142 (325)
|..+|++.|.+..+.+..|.+++.|..|-+ .+ |+++......|.++..|+.|.+.-|.+.-...+.|..+++|
T Consensus 93 LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvl--yg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLs 170 (498)
T KOG4237|consen 93 LRRLDLSKNNISFIAPDAFKGLASLLSLVL--YGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLS 170 (498)
T ss_pred hceecccccchhhcChHhhhhhHhhhHHHh--hcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhc
Confidence 445888999999999999999998888777 55 77766555556666666666665555554444444444444
Q ss_pred --------------------ceeecccCcCC-------------------------------------------------
Q 045233 143 --------------------VHLDLGNNNLT------------------------------------------------- 153 (325)
Q Consensus 143 --------------------~~L~Ls~N~l~------------------------------------------------- 153 (325)
+.+.+..|.+-
T Consensus 171 lyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es 250 (498)
T KOG4237|consen 171 LYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES 250 (498)
T ss_pred ccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence 44444444310
Q ss_pred ------------CcCc-hhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECC
Q 045233 154 ------------GPIP-STLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLS 209 (325)
Q Consensus 154 ------------~~~p-~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 209 (325)
+..| ..|.++++|+.|++++| ....+++|.|..|++...-...|.++..|+.|+|.
T Consensus 251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred HHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence 0122 24788899999999999 45689999999999997777889999999999999
Q ss_pred CCcCCCCCCCcccCCCCCcEEEccCCCCCchHHHHHHHH
Q 045233 210 ANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLAC 248 (325)
Q Consensus 210 ~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 248 (325)
+|+|+...|.+|..+..|..|.+-.|++.|..-+....-
T Consensus 331 ~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 331 DNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred CCeeEEEecccccccceeeeeehccCcccCccchHHHHH
Confidence 999999899999999999999999999999766544433
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=1.3e-11 Score=122.68 Aligned_cols=89 Identities=31% Similarity=0.517 Sum_probs=45.3
Q ss_pred cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCC--------CCCcEEEccCCc
Q 045233 117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM--------KNLTWLDISNNK 188 (325)
Q Consensus 117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l--------~~L~~L~Ls~n~ 188 (325)
+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+ ++|+.|++++|+
T Consensus 284 sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~ 357 (754)
T PRK15370 284 ELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQ 357 (754)
T ss_pred CCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCccccCChhhcCcccEEECCCCC
Confidence 4555555555554 2332221 23444444444444 233222 24566666666632 356667777776
Q ss_pred CCCCCchhhhCCCCCCEEECCCCcCC
Q 045233 189 IEGSIPGELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 189 l~~~~p~~~~~l~~L~~L~L~~N~l~ 214 (325)
++ .+|..+. ++|+.|++++|+++
T Consensus 358 L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 358 IT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred CC-cCChhhc--CCcCEEECCCCcCC
Confidence 66 4554432 45666666666665
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.23 E-value=7.3e-11 Score=124.04 Aligned_cols=119 Identities=27% Similarity=0.305 Sum_probs=101.3
Q ss_pred CCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC--------CCCCCcEEEccC
Q 045233 115 LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT--------SMKNLTWLDISN 186 (325)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n--------~l~~L~~L~Ls~ 186 (325)
.++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++| ..++|+.|+|++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence 3578899999998777899999999999999999986555788765 7899999999987 235799999999
Q ss_pred CcCCCCCchhhhCCCCCCEEECCCCc-CCCCCCCcccCCCCCcEEEccCCC
Q 045233 187 NKIEGSIPGELTELSRPDCLSLSANK-LSGPVPFSNKQLSTMYIVRLSPNK 236 (325)
Q Consensus 187 n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~l~~N~ 236 (325)
|.++ .+|..+..+++|+.|++++|+ +. .+|.....++.|+.++++++.
T Consensus 856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 9998 789899999999999999854 55 577778889999999988875
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=4.9e-13 Score=123.96 Aligned_cols=164 Identities=31% Similarity=0.448 Sum_probs=136.4
Q ss_pred cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233 71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150 (325)
Q Consensus 71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 150 (325)
.|++.|....++. .+..|..|+.+.+ ..|.+. .+|..+.++..|++|||+.|+++ .+|..+..++ |+.|-+++|
T Consensus 80 aDlsrNR~~elp~-~~~~f~~Le~liL--y~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 80 ADLSRNRFSELPE-EACAFVSLESLIL--YHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhccccccccCch-HHHHHHHHHHHHH--Hhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 5566666666654 3555667777777 666665 57888999999999999999999 7888888887 899999999
Q ss_pred cCCCcCchhccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCc
Q 045233 151 NLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220 (325)
Q Consensus 151 ~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 220 (325)
+++ .+|+.++...+|..|+.+.| .+.+|+.|.+..|++. .+|..+..+ .|..||++.|+++ .+|-.
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence 999 89999999999999999998 4567888999999999 667777755 5889999999999 78999
Q ss_pred ccCCCCCcEEEccCCCCCchHHHH
Q 045233 221 NKQLSTMYIVRLSPNKGLGSNFII 244 (325)
Q Consensus 221 ~~~l~~L~~L~l~~N~~~~~~~~~ 244 (325)
|.+++.|++|-|.+|++....+.+
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHH
Confidence 999999999999999998765543
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=1.3e-12 Score=127.26 Aligned_cols=160 Identities=25% Similarity=0.303 Sum_probs=105.5
Q ss_pred cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccc-------------------------cCCCcCCEEeccc
Q 045233 71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-------------------------SALSKLQLLDLSL 125 (325)
Q Consensus 71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l-------------------------~~l~~L~~L~Ls~ 125 (325)
+....|.+..++. ...+++.|+.|+| ..|.+....+..+ ..++.|+.|.+.+
T Consensus 292 l~~~~nel~yip~-~le~~~sL~tLdL--~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 292 LSAAYNELEYIPP-FLEGLKSLRTLDL--QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHhhhhhhhhCCC-cccccceeeeeee--hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 4444455444443 2445777777777 6665543211111 1133466777777
Q ss_pred CCCCCCCchhhcCCcccceeecccCcCCCcCc-hhccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCc
Q 045233 126 NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIP-STLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIP 194 (325)
Q Consensus 126 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p 194 (325)
|.++...-+.+.++++|+.|+|++|++. .+| ..+.++..|+.|++++| .++.|++|...+|++. ..|
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP 446 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP 446 (1081)
T ss_pred Ccccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech
Confidence 8877666666777888888888888887 455 35677788888888888 3456777777788877 666
Q ss_pred hhhhCCCCCCEEECCCCcCCCC-CCCcccCCCCCcEEEccCCCC
Q 045233 195 GELTELSRPDCLSLSANKLSGP-VPFSNKQLSTMYIVRLSPNKG 237 (325)
Q Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~~ 237 (325)
.+..++.|+.+|++.|+|+.. +|.. -..++|++||+++|.-
T Consensus 447 -e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 -ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -hhhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCcc
Confidence 778888888888888888753 3332 2237888888888874
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=7.1e-13 Score=128.93 Aligned_cols=146 Identities=29% Similarity=0.336 Sum_probs=108.2
Q ss_pred CCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEE
Q 045233 90 PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169 (325)
Q Consensus 90 ~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 169 (325)
.+|+++++ +.|.+++ +|+.+..+.+|+.++..+|++. .+|..+...++|++|.+.+|.+. -+|+...++.+|+.|
T Consensus 241 ~nl~~~di--s~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDI--SHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccceeeec--chhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 46777777 6666664 4466777777777777777775 66777777777777777777776 566666667777777
Q ss_pred EcCcC------------------------------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcC
Q 045233 170 DLKVT------------------------------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL 213 (325)
Q Consensus 170 ~l~~n------------------------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l 213 (325)
+|..| .++.|+.|++.+|.+++..-+.+.++++|+.|+|++|+|
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 77655 234677888888888887777888888999999999988
Q ss_pred CCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 214 SGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 214 ~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
.......+.++..|+.|+++||++.-.
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhhhh
Confidence 855556778888889999999987643
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.14 E-value=7.2e-11 Score=117.06 Aligned_cols=116 Identities=26% Similarity=0.304 Sum_probs=84.7
Q ss_pred CCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEE
Q 045233 91 NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLD 170 (325)
Q Consensus 91 ~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 170 (325)
+|+.|++ ++|.+++ +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|.. .++|+.|+
T Consensus 343 ~Lq~LdL--S~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~Ld 408 (788)
T PRK15387 343 GLQELSV--SDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELM 408 (788)
T ss_pred ccceEec--CCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEE
Confidence 4566666 5555553 3322 234555666666665 34432 246889999999998 46653 36799999
Q ss_pred cCcCCCC-------CCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233 171 LKVTSMK-------NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN 221 (325)
Q Consensus 171 l~~n~l~-------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 221 (325)
+++|.+. +|+.|++++|+++ .+|+.+.++++|+.++|++|++++..+..+
T Consensus 409 LS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 409 VSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCcCCCCCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 9999554 5788999999999 789999999999999999999998766554
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1e-10 Score=96.00 Aligned_cols=106 Identities=36% Similarity=0.409 Sum_probs=26.2
Q ss_pred CCcCCEEecccCCCCCCCchhhc-CCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCC
Q 045233 115 LSKLQLLDLSLNRLSGTIPSNIG-NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSI 193 (325)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~ 193 (325)
..++++|+|++|.|+. + +.++ .+.+|+.|++++|.++ .++ .+..+ ++|+.|++++|.++. +
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L-------------~~L~~L~L~~N~I~~-i 79 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGL-------------PRLKTLDLSNNRISS-I 79 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T-----------------TT--EEE--SS---S--
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccCh-------------hhhhhcccCCCCCCc-c
Confidence 3445566666666552 2 2233 3455666666666665 222 12222 334444555555552 2
Q ss_pred chhh-hCCCCCCEEECCCCcCCCCC-CCcccCCCCCcEEEccCCCCC
Q 045233 194 PGEL-TELSRPDCLSLSANKLSGPV-PFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 194 p~~~-~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~~~ 238 (325)
++.+ ..+++|+.|++++|+|.... -..++.+++|+.|++.+|+++
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 2222 34566666666666665321 133455666666666666654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=1.4e-10 Score=108.48 Aligned_cols=163 Identities=33% Similarity=0.474 Sum_probs=119.5
Q ss_pred ccccCCccccccCccccCCC-CCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233 70 WYDVDLNAQAQLSQLNFSCF-PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG 148 (325)
Q Consensus 70 ~l~~~~n~~~~l~~~~~~~l-~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 148 (325)
.+++..+.+..++.. ...+ ++|+.|++ +.|.+.. +|..+..+++|+.|++++|+++ .+|......+.|+.|+++
T Consensus 120 ~L~l~~n~i~~i~~~-~~~~~~nL~~L~l--~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 120 SLDLDNNNITDIPPL-IGLLKSNLKELDL--SDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred EEecCCcccccCccc-cccchhhcccccc--cccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 344445555555432 2233 27888888 6776653 4455777888888888888888 666665577888888888
Q ss_pred cCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCC
Q 045233 149 NNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP 218 (325)
Q Consensus 149 ~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 218 (325)
+|+++ .+|........|+++.+++| .++++..+.+.+|++. ..+..++.++.++.|++++|.++.. +
T Consensus 195 ~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~ 271 (394)
T COG4886 195 GNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-S 271 (394)
T ss_pred CCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-c
Confidence 88888 67766666666888888877 3456777778888877 4467788899999999999999954 3
Q ss_pred CcccCCCCCcEEEccCCCCCchH
Q 045233 219 FSNKQLSTMYIVRLSPNKGLGSN 241 (325)
Q Consensus 219 ~~~~~l~~L~~L~l~~N~~~~~~ 241 (325)
. ++.+.+++.+++++|.++...
T Consensus 272 ~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 272 S-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred c-ccccCccCEEeccCccccccc
Confidence 3 889999999999999887543
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=6e-11 Score=102.62 Aligned_cols=122 Identities=30% Similarity=0.323 Sum_probs=102.2
Q ss_pred CCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCcEEE
Q 045233 114 ALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTWLD 183 (325)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~L~ 183 (325)
..+.|+++|||+|.++ .+.++..-.|.++.|++|+|.+. .+.. +..+++|+.||+++| .+.+++.|.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 3467899999999998 77888888899999999999998 4443 888999999999999 567889999
Q ss_pred ccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCC-CCcccCCCCCcEEEccCCCCCch
Q 045233 184 ISNNKIEGSIPGELTELSRPDCLSLSANKLSGPV-PFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 184 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
|+.|.+... +.++.+-+|..||+++|+|.... -..+++++-|+++.+.+|++.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999988732 34667788999999999998532 35689999999999999998765
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=7.7e-11 Score=109.65 Aligned_cols=143 Identities=27% Similarity=0.433 Sum_probs=117.3
Q ss_pred ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeeccc
Q 045233 70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN 149 (325)
Q Consensus 70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 149 (325)
.+.+..|.+..++. ++..+..|++|++ +.|+++ .+|..+..|+ |+.|-+++|+++ .+|+.++.++.|..||.+.
T Consensus 102 ~liLy~n~~r~ip~-~i~~L~~lt~l~l--s~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 102 SLILYHNCIRTIPE-AICNLEALTFLDL--SSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHhccceecch-hhhhhhHHHHhhh--ccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhh
Confidence 34455555555544 5778888999999 788776 4666777766 889999999998 8888899889999999999
Q ss_pred CcCCCcCchhccCCCCCcEEEcCcCCCC---------CCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCc
Q 045233 150 NNLTGPIPSTLARLTNLKYLDLKVTSMK---------NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220 (325)
Q Consensus 150 N~l~~~~p~~~~~l~~L~~L~l~~n~l~---------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 220 (325)
|.+. .+|..++.+.+|+.|++..|++. .|..||++.|+++ .+|-.|.+|+.|++|-|.+|+++. .|..
T Consensus 176 nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAq 252 (722)
T KOG0532|consen 176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQ 252 (722)
T ss_pred hhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHH
Confidence 9998 88888999999999999888432 4788999999999 899999999999999999999984 3433
Q ss_pred c
Q 045233 221 N 221 (325)
Q Consensus 221 ~ 221 (325)
+
T Consensus 253 I 253 (722)
T KOG0532|consen 253 I 253 (722)
T ss_pred H
Confidence 3
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=1.2e-09 Score=89.76 Aligned_cols=87 Identities=32% Similarity=0.404 Sum_probs=25.9
Q ss_pred hcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 136 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 215 (325)
+.+..++++|+|.+|+|+ .+. .++. .+.+|+.|++++|.++. ++ .+..++.|+.|++++|.|+.
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~------------~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGA------------TLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp -----------------------S--T------------T-TT--EEE-TTS--S---T-T----TT--EEE--SS---S
T ss_pred cccccccccccccccccc-ccc-chhh------------hhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc
Confidence 445567899999999998 332 2331 13445666777777773 33 46778999999999999995
Q ss_pred CCCCcc-cCCCCCcEEEccCCCCCc
Q 045233 216 PVPFSN-KQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 216 ~~p~~~-~~l~~L~~L~l~~N~~~~ 239 (325)
+...+ ..+++|+.|++++|++..
T Consensus 79 -i~~~l~~~lp~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 79 -ISEGLDKNLPNLQELYLSNNKISD 102 (175)
T ss_dssp --CHHHHHH-TT--EEE-TTS---S
T ss_pred -cccchHHhCCcCCEEECcCCcCCC
Confidence 44334 468999999999999865
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=1.6e-10 Score=100.08 Aligned_cols=123 Identities=31% Similarity=0.369 Sum_probs=102.0
Q ss_pred CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcE
Q 045233 89 FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKY 168 (325)
Q Consensus 89 l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 168 (325)
...|+++|+ ++|.++ .+.++..-+|.++.|++|+|.+. .+.. +..+++|+.||||+|.++ .+..+-.++-+++.
T Consensus 283 Wq~LtelDL--S~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDL--SGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred Hhhhhhccc--cccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 456889999 888776 45667777899999999999998 4433 888999999999999999 66667778889999
Q ss_pred EEcCcC---------CCCCCcEEEccCCcCCCC-CchhhhCCCCCCEEECCCCcCCCCC
Q 045233 169 LDLKVT---------SMKNLTWLDISNNKIEGS-IPGELTELSRPDCLSLSANKLSGPV 217 (325)
Q Consensus 169 L~l~~n---------~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~ 217 (325)
|.++.| .+-+|..||+++|+|... --..+++++.|+++.|.+|++.+..
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 999999 455788999999998743 2246889999999999999998643
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.4e-09 Score=73.55 Aligned_cols=58 Identities=48% Similarity=0.684 Sum_probs=28.8
Q ss_pred cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC
Q 045233 117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT 174 (325)
Q Consensus 117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n 174 (325)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4455555555555333344555555555555555555444444555555544444443
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=2e-09 Score=72.73 Aligned_cols=60 Identities=33% Similarity=0.433 Sum_probs=39.6
Q ss_pred CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233 177 KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236 (325)
Q Consensus 177 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 236 (325)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|+.|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345666666666665555666666777777777777666556666777777777777665
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=4.1e-09 Score=98.62 Aligned_cols=148 Identities=38% Similarity=0.471 Sum_probs=119.8
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCC-cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALS-KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT 164 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 164 (325)
...++.++.|++ .+|.++. +|+....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|......+
T Consensus 112 ~~~~~~l~~L~l--~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~ 186 (394)
T COG4886 112 LLELTNLTSLDL--DNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS 186 (394)
T ss_pred hhcccceeEEec--CCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhh
Confidence 444577889999 7777764 555566664 8999999999998 67677899999999999999999 7777666889
Q ss_pred CCcEEEcCcCCC----------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccC
Q 045233 165 NLKYLDLKVTSM----------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSP 234 (325)
Q Consensus 165 ~L~~L~l~~n~l----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 234 (325)
.|+.|++++|.+ ..|+++.+++|++. ..+..+..+..+..+.+.+|++. ..+..++.++.++.|++++
T Consensus 187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN 264 (394)
T ss_pred hhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccc
Confidence 999999999832 23888999999755 56677888999999999999988 3467788899999999999
Q ss_pred CCCCch
Q 045233 235 NKGLGS 240 (325)
Q Consensus 235 N~~~~~ 240 (325)
|.+.-.
T Consensus 265 n~i~~i 270 (394)
T COG4886 265 NQISSI 270 (394)
T ss_pred cccccc
Confidence 988654
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.6e-10 Score=99.79 Aligned_cols=149 Identities=26% Similarity=0.236 Sum_probs=67.0
Q ss_pred CCCCCCCEEEeccccCcCCCCC--cccccCCCcCCEEecccCCCCCCCchh-hcCCcccceeecccCcCCCcC-chhccC
Q 045233 87 SCFPNLESLRIQAYYYGFTGSI--PSDISALSKLQLLDLSLNRLSGTIPSN-IGNLRNLVHLDLGNNNLTGPI-PSTLAR 162 (325)
Q Consensus 87 ~~l~~L~~L~l~~~~n~~~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~-p~~~~~ 162 (325)
..|++++.||| +.|=+.... -.....+++|+.|+++.|.+.-..... -..+++|+.|.|+.|.++... ......
T Consensus 143 k~~~~v~~LdL--S~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 143 KILPNVRDLDL--SRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhCCcceeecc--hhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34556666666 555443321 122344556666666666554211111 123455555555555555221 112334
Q ss_pred CCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCC-chhhhCCCCCCEEECCCCcCCCC-CCCc-----ccCC
Q 045233 163 LTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSI-PGELTELSRPDCLSLSANKLSGP-VPFS-----NKQL 224 (325)
Q Consensus 163 l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~-~p~~-----~~~l 224 (325)
+|+|+.|++..| .++.|+.|||++|++-... -...+.++.|..|+++.+.++.. .|+. ...+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 455555555555 2234555555555544211 02334455555555555554431 1211 2334
Q ss_pred CCCcEEEccCCCC
Q 045233 225 STMYIVRLSPNKG 237 (325)
Q Consensus 225 ~~L~~L~l~~N~~ 237 (325)
++|+.|++..|++
T Consensus 301 ~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 301 PKLEYLNISENNI 313 (505)
T ss_pred ccceeeecccCcc
Confidence 4555555555554
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.8e-09 Score=97.76 Aligned_cols=152 Identities=22% Similarity=0.202 Sum_probs=101.4
Q ss_pred cCCCCCCCEEEeccccCcCCCCCccc-ccCCCcCCEEecccCCCC-CCCchhhcCCcccceeecccCcCCCcCchhccCC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSD-ISALSKLQLLDLSLNRLS-GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~-l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 163 (325)
...+|+|+.|++ +.|.+.-..... -..+++|+.|.++.|.++ ..+......+|+|+.|+|..|.....-......+
T Consensus 168 ~eqLp~Le~LNl--s~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~ 245 (505)
T KOG3207|consen 168 AEQLPSLENLNL--SSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL 245 (505)
T ss_pred HHhcccchhccc--ccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh
Confidence 456888888888 777765332222 224678888888888887 2333445567888888888885332333345566
Q ss_pred CCCcEEEcCcC------------CCCCCcEEEccCCcCCCC-Cchh-----hhCCCCCCEEECCCCcCCCCC-CCcccCC
Q 045233 164 TNLKYLDLKVT------------SMKNLTWLDISNNKIEGS-IPGE-----LTELSRPDCLSLSANKLSGPV-PFSNKQL 224 (325)
Q Consensus 164 ~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~-~p~~-----~~~l~~L~~L~L~~N~l~~~~-p~~~~~l 224 (325)
..|+.|+|++| .++.|+.|+++.+++... .|+. ...+++|++|++..|++.... -..+..+
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l 325 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL 325 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc
Confidence 78888888887 467788888888887643 3333 345678888888888886421 1334556
Q ss_pred CCCcEEEccCCCCCc
Q 045233 225 STMYIVRLSPNKGLG 239 (325)
Q Consensus 225 ~~L~~L~l~~N~~~~ 239 (325)
++|+.+.+..|++..
T Consensus 326 ~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 326 ENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhhcccccccc
Confidence 677777777777654
No 37
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.67 E-value=2.5e-08 Score=91.90 Aligned_cols=45 Identities=31% Similarity=0.347 Sum_probs=41.3
Q ss_pred CCccccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 277 YDRSIVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 277 ~~~~~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..+.|+|.++.+||+||+ ++||+||||.||+|.+ ++|++||||.+
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l---~~~~~vAVK~~ 107 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVL---SDGTVVAVKRL 107 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEE---CCCCEEEEEEe
Confidence 346799999999999998 8999999999999999 89999999964
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.67 E-value=8.9e-09 Score=90.90 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=105.6
Q ss_pred cCCCCCCCEEEeccccCcCCCCCccc----ccCCCcCCEEecccCCCCCCCc-------------hhhcCCcccceeecc
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSD----ISALSKLQLLDLSLNRLSGTIP-------------SNIGNLRNLVHLDLG 148 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p-------------~~~~~l~~L~~L~Ls 148 (325)
+.+.++|++|+| +.|.+...-++. +.++..|++|.|.+|.+...-. ...+.-+.|+.+...
T Consensus 88 L~~~~~L~~ldL--SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 88 LLGCPKLQKLDL--SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HhcCCceeEeec--cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 555667777777 666655433332 4556777777777777652111 112334567777777
Q ss_pred cCcCCCc----CchhccCCCCCcEEEcCcC---------------CCCCCcEEEccCCcCCCC----CchhhhCCCCCCE
Q 045233 149 NNNLTGP----IPSTLARLTNLKYLDLKVT---------------SMKNLTWLDISNNKIEGS----IPGELTELSRPDC 205 (325)
Q Consensus 149 ~N~l~~~----~p~~~~~l~~L~~L~l~~n---------------~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~ 205 (325)
+|++... +...|...+.|+.+.+..| .+++|+.|||.+|-++.. +...+..+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 7777622 1234566677777777766 568888888888887743 3456677888888
Q ss_pred EECCCCcCCCCCCCc-----ccCCCCCcEEEccCCCCCchHHHHHHHHHH
Q 045233 206 LSLSANKLSGPVPFS-----NKQLSTMYIVRLSPNKGLGSNFIIVLACLL 250 (325)
Q Consensus 206 L~L~~N~l~~~~p~~-----~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 250 (325)
|++++|.+...-... -...++|+++.+.+|.++-....++..|+-
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ 295 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA 295 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh
Confidence 888888887532211 134678899999999888776666666654
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.64 E-value=5.1e-09 Score=92.41 Aligned_cols=174 Identities=18% Similarity=0.227 Sum_probs=130.2
Q ss_pred CCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCc-------------ccccCCCcCCEEecccCC
Q 045233 61 GSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIP-------------SDISALSKLQLLDLSLNR 127 (325)
Q Consensus 61 ~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p-------------~~l~~l~~L~~L~Ls~n~ 127 (325)
|+.+.+||+...+.-..+..+... +..+..|++|.| ++|.+...-. .-...-+.|+.+...+|+
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~l-l~s~~~L~eL~L--~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEEL-LSSCTDLEELYL--NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred CceeEeeccccccCccchHHHHHH-HHhccCHHHHhh--hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 466777777655555554444332 566899999999 8887653211 123445789999999999
Q ss_pred CCC----CCchhhcCCcccceeecccCcCCCc----CchhccCCCCCcEEEcCcC---------------CCCCCcEEEc
Q 045233 128 LSG----TIPSNIGNLRNLVHLDLGNNNLTGP----IPSTLARLTNLKYLDLKVT---------------SMKNLTWLDI 184 (325)
Q Consensus 128 l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~n---------------~l~~L~~L~L 184 (325)
+.. .+...|...+.|+.+.+..|.|... +-..+..+++|+.|||..| .+++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 973 3445677889999999999998722 2356889999999999999 5678999999
Q ss_pred cCCcCCCCCchhh-----hCCCCCCEEECCCCcCCCC----CCCcccCCCCCcEEEccCCCC
Q 045233 185 SNNKIEGSIPGEL-----TELSRPDCLSLSANKLSGP----VPFSNKQLSTMYIVRLSPNKG 237 (325)
Q Consensus 185 s~n~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~ 237 (325)
++|.+.......+ ...+.|+.|.+.+|.++.. +.......+.|..|++++|.+
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9999987655444 2478999999999999842 223345688999999999998
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=3.1e-08 Score=93.33 Aligned_cols=159 Identities=31% Similarity=0.352 Sum_probs=84.1
Q ss_pred ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeeccc
Q 045233 70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN 149 (325)
Q Consensus 70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 149 (325)
.+++..|.+..+... +..+++|++|++ ++|.+....+ +..++.|+.|++++|.++. + ..+..+++|+.+++++
T Consensus 99 ~l~l~~n~i~~i~~~-l~~~~~L~~L~l--s~N~I~~i~~--l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 99 ALDLYDNKIEKIENL-LSSLVNLQVLDL--SFNKITKLEG--LSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSY 171 (414)
T ss_pred eeeccccchhhcccc-hhhhhcchheec--cccccccccc--hhhccchhhheeccCcchh-c-cCCccchhhhcccCCc
Confidence 344445554444321 455666666666 5666554422 4455556666666666652 2 2234456666666666
Q ss_pred CcCCCcCchh-ccCCCCCcEEEcCcCC---------CCCCcEEEccCCcCCCCCchhhhCCC--CCCEEECCCCcCCCCC
Q 045233 150 NNLTGPIPST-LARLTNLKYLDLKVTS---------MKNLTWLDISNNKIEGSIPGELTELS--RPDCLSLSANKLSGPV 217 (325)
Q Consensus 150 N~l~~~~p~~-~~~l~~L~~L~l~~n~---------l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~ 217 (325)
|+++..-+ . ...+.+++.+++..|. +..+..+++..|.++..-+ +..+. .|+.+++++|++. ..
T Consensus 172 n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~ 247 (414)
T KOG0531|consen 172 NRIVDIEN-DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RS 247 (414)
T ss_pred chhhhhhh-hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cc
Confidence 66663222 1 3555666666666651 1222333445555442211 11122 2677777777776 33
Q ss_pred CCcccCCCCCcEEEccCCCCCc
Q 045233 218 PFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 218 p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
+..+..+..+..+++.+|.+..
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cccccccccccccchhhccccc
Confidence 3455667777777777777654
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=7.6e-09 Score=99.11 Aligned_cols=121 Identities=29% Similarity=0.333 Sum_probs=96.1
Q ss_pred cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCC----------CCcEEEccC
Q 045233 117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMK----------NLTWLDISN 186 (325)
Q Consensus 117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~----------~L~~L~Ls~ 186 (325)
.|...+.++|.+. .+..++.-++.|+.|+|++|+++. .. .+..+++|++||+++|.+. .|..|.+++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 4566778888887 677778888999999999999984 33 7889999999999999442 478888999
Q ss_pred CcCCCCCchhhhCCCCCCEEECCCCcCCCCCC-CcccCCCCCcEEEccCCCCCchHH
Q 045233 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVP-FSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 187 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
|.++.. ..+.++.+|+.||+++|-|.+... ..+..+..|+.|+|.||++.|...
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 988733 256788999999999999886422 235677889999999999988644
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.31 E-value=2.8e-07 Score=93.60 Aligned_cols=147 Identities=26% Similarity=0.342 Sum_probs=79.3
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 165 (325)
|..++.|++||+ ++|.-.+.+|..++.+-+|++|+++++.+. .+|..++++..|.+|++..+.-...+|.....+++
T Consensus 567 f~~m~~LrVLDL--s~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDL--SGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HhhCcceEEEEC--CCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 555666666666 556555666666666666666666666666 66666666666666666666554444555555666
Q ss_pred CcEEEcCcC-------------CCCCCcEEEccCCcCCCCCchhhhCCCCCC----EEECCCCcCCCCCCCcccCCCCCc
Q 045233 166 LKYLDLKVT-------------SMKNLTWLDISNNKIEGSIPGELTELSRPD----CLSLSANKLSGPVPFSNKQLSTMY 228 (325)
Q Consensus 166 L~~L~l~~n-------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~L~~N~l~~~~p~~~~~l~~L~ 228 (325)
|++|.+-.. ++.+|+.+....... .+-..+..++.|. .+.+.++... ..+..+..+.+|+
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~ 720 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLE 720 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcc
Confidence 666665332 222233222221111 0001112222221 2222222222 3345667888888
Q ss_pred EEEccCCCCC
Q 045233 229 IVRLSPNKGL 238 (325)
Q Consensus 229 ~L~l~~N~~~ 238 (325)
.|.+.+..+.
T Consensus 721 ~L~i~~~~~~ 730 (889)
T KOG4658|consen 721 ELSILDCGIS 730 (889)
T ss_pred eEEEEcCCCc
Confidence 8988887764
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.2e-08 Score=86.81 Aligned_cols=164 Identities=19% Similarity=0.142 Sum_probs=117.2
Q ss_pred ccccccCCcccccc-CccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-CCC-CCchhhcCCcccce
Q 045233 68 LSWYDVDLNAQAQL-SQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-LSG-TIPSNIGNLRNLVH 144 (325)
Q Consensus 68 l~~l~~~~n~~~~l-~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l~~L~~ 144 (325)
++++|++...++.- -...+..+.+|+.|.+ .++.+.+.+...+..-.+|+.|+++.+. ++. ...-.+.+++.|..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSl--Eg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSL--EGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccc--cccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 44555555443311 0112677888999999 8888888888888888999999998875 331 22234678899999
Q ss_pred eecccCcCCCcCch-hccC-CCCCcEEEcCcC--------------CCCCCcEEEccCCc-CCCCCchhhhCCCCCCEEE
Q 045233 145 LDLGNNNLTGPIPS-TLAR-LTNLKYLDLKVT--------------SMKNLTWLDISNNK-IEGSIPGELTELSRPDCLS 207 (325)
Q Consensus 145 L~Ls~N~l~~~~p~-~~~~-l~~L~~L~l~~n--------------~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~ 207 (325)
|+|+.|.++...-. .+.+ -++|+.|+++++ .+++|.+|||++|. ++......|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999988743322 2222 257888888876 68999999999875 5555566788899999999
Q ss_pred CCCCcCCCCCCC---cccCCCCCcEEEccCC
Q 045233 208 LSANKLSGPVPF---SNKQLSTMYIVRLSPN 235 (325)
Q Consensus 208 L~~N~l~~~~p~---~~~~l~~L~~L~l~~N 235 (325)
++.|.. .+|. .+...+.|.+|++.+.
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 998863 3443 3678889999998775
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.4e-06 Score=54.41 Aligned_cols=37 Identities=41% Similarity=0.670 Sum_probs=25.3
Q ss_pred CcCCEEecccCCCCCCCchhhcCCcccceeecccCcCC
Q 045233 116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT 153 (325)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 153 (325)
++|++|++++|+++ .+|+.++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777777 56666777777777777777776
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=1.6e-07 Score=88.51 Aligned_cols=99 Identities=37% Similarity=0.426 Sum_probs=50.2
Q ss_pred ccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEE
Q 045233 112 ISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWL 182 (325)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L 182 (325)
+..+++|+.|++.+|.+. .+...+..+++|++|++++|.|+... .+..++.|+.|++++| .++.|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCCccchhhhcc
Confidence 444555555555555555 22222444555555555555555221 1334444555555555 24455666
Q ss_pred EccCCcCCCCCc-hhhhCCCCCCEEECCCCcCC
Q 045233 183 DISNNKIEGSIP-GELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 183 ~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~ 214 (325)
++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus 168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 666666663333 1 345555666666666554
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=5.2e-08 Score=93.55 Aligned_cols=116 Identities=29% Similarity=0.375 Sum_probs=85.1
Q ss_pred CCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchh-ccCCCCCcEEE
Q 045233 92 LESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPST-LARLTNLKYLD 170 (325)
Q Consensus 92 L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~ 170 (325)
|...+. +.|.+. ....++.-++.|+.|||++|+++.. . .+..+++|++|||++|.+. .+|.- ...+ +|+.|.
T Consensus 166 L~~a~f--syN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 166 LATASF--SYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred Hhhhhc--chhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 444455 556554 3445666778889999999998843 2 6888899999999999998 66642 2233 488999
Q ss_pred cCcC---------CCCCCcEEEccCCcCCCC-CchhhhCCCCCCEEECCCCcCC
Q 045233 171 LKVT---------SMKNLTWLDISNNKIEGS-IPGELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 171 l~~n---------~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~ 214 (325)
+++| ++.+|+.||+++|-+.+. .-..+..+..|+.|+|.+|++.
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9988 677888999999987753 2234566778889999999886
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=1.9e-07 Score=72.20 Aligned_cols=57 Identities=28% Similarity=0.448 Sum_probs=29.5
Q ss_pred cCCCcCCEEecccCCCCCCCchhhc-CCcccceeecccCcCCCcCchhccCCCCCcEEEc
Q 045233 113 SALSKLQLLDLSLNRLSGTIPSNIG-NLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL 171 (325)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 171 (325)
.....|+..+|++|.+. .+|+.|. ..+.++.|+|++|.++ .+|..+..++.|+.|++
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 33444555566666665 3444433 2335566666666665 55555555555444433
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.05 E-value=3.4e-06 Score=85.77 Aligned_cols=117 Identities=31% Similarity=0.430 Sum_probs=86.9
Q ss_pred CCCCCEEEeccccCc--CCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233 89 FPNLESLRIQAYYYG--FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166 (325)
Q Consensus 89 l~~L~~L~l~~~~n~--~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 166 (325)
.++|+.|-+ ..|. +....++.|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..+. .+|..+.++..|
T Consensus 544 ~~~L~tLll--~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLL--QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CCccceEEE--eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 457888888 6665 44444555888999999999998776799999999999999999999999 899999999999
Q ss_pred cEEEcCcC-----------CCCCCcEEEccCCc--CCCCCchhhhCCCCCCEEEC
Q 045233 167 KYLDLKVT-----------SMKNLTWLDISNNK--IEGSIPGELTELSRPDCLSL 208 (325)
Q Consensus 167 ~~L~l~~n-----------~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L 208 (325)
.+|++..+ .+++|++|.+..-. .+...-..+..+.+|+.+..
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99988765 26677777765543 22223334445555555544
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=5.8e-06 Score=72.04 Aligned_cols=149 Identities=21% Similarity=0.188 Sum_probs=73.8
Q ss_pred CCCCCEEEeccccCcCCCC--CcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcC-chhccCCCC
Q 045233 89 FPNLESLRIQAYYYGFTGS--IPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPI-PSTLARLTN 165 (325)
Q Consensus 89 l~~L~~L~l~~~~n~~~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~ 165 (325)
.+.++.+|+ ..|.++.. +...+.++|.|+.|+++.|++...+...-....+|+.|-|.+..+...- ...+..+|.
T Consensus 70 ~~~v~elDL--~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDL--TGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhc--ccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 445555555 55555432 2233445566666666666555322211123445555555555544222 123334445
Q ss_pred CcEEEcCcC----------------------------------------CCCCCcEEEccCCcCCCCC-chhhhCCCCCC
Q 045233 166 LKYLDLKVT----------------------------------------SMKNLTWLDISNNKIEGSI-PGELTELSRPD 204 (325)
Q Consensus 166 L~~L~l~~n----------------------------------------~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~ 204 (325)
++.|+++.| .++++..+.+..|.+...- -..+..++.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 555544444 2355555555555544221 12233455555
Q ss_pred EEECCCCcCCCCC-CCcccCCCCCcEEEccCCCCCc
Q 045233 205 CLSLSANKLSGPV-PFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 205 ~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
.|+|+.|+|.... -+.+..++.|..|.++.|++..
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 6666666665421 2345666667777777776653
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.2e-05 Score=50.10 Aligned_cols=36 Identities=47% Similarity=0.676 Sum_probs=20.5
Q ss_pred CCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCC
Q 045233 178 NLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 178 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 214 (325)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666666 34445666666666666666665
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=9.5e-07 Score=68.41 Aligned_cols=84 Identities=24% Similarity=0.271 Sum_probs=63.1
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 165 (325)
+.....|+..++ ++|.+....+......+.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.+
T Consensus 49 l~~~~el~~i~l--s~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 49 LSKGYELTKISL--SDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK 124 (177)
T ss_pred HhCCceEEEEec--ccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence 445566777888 888877544444455678899999999998 78888999999999999999998 67777776666
Q ss_pred CcEEEcCc
Q 045233 166 LKYLDLKV 173 (325)
Q Consensus 166 L~~L~l~~ 173 (325)
+-.|+...
T Consensus 125 l~~Lds~~ 132 (177)
T KOG4579|consen 125 LDMLDSPE 132 (177)
T ss_pred HHHhcCCC
Confidence 55554433
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=2e-05 Score=65.09 Aligned_cols=106 Identities=25% Similarity=0.285 Sum_probs=70.7
Q ss_pred CcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCch
Q 045233 116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG 195 (325)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~ 195 (325)
.+...+||++|.+. .+ +.|..++.|.+|.|++|+|+...|.--.-+++|+.|.+.+|++..|..| +
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl------------~ 107 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL------------D 107 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc------------c
Confidence 34567888888876 22 3467778888888888888855554333344555555555444333222 2
Q ss_pred hhhCCCCCCEEECCCCcCCCC---CCCcccCCCCCcEEEccCC
Q 045233 196 ELTELSRPDCLSLSANKLSGP---VPFSNKQLSTMYIVRLSPN 235 (325)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~l~~N 235 (325)
.+..++.|++|.+-+|+.+.. --..+..+++|+.||+..=
T Consensus 108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 456788999999999998753 2345788999999998753
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.9e-06 Score=75.10 Aligned_cols=123 Identities=24% Similarity=0.240 Sum_probs=79.0
Q ss_pred cCCEEecccCCCC-CCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-------------CCCCCcEE
Q 045233 117 KLQLLDLSLNRLS-GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-------------SMKNLTWL 182 (325)
Q Consensus 117 ~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-------------~l~~L~~L 182 (325)
.|++||||+..++ ..+...+..+.+|+.|.|.++++...+...+.+-.+|+.|+++.+ +++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5788888888776 234445667788888888888888777777888888888888766 56778888
Q ss_pred EccCCcCCCCCchh-hhC-CCCCCEEECCCCc--CC-CCCCCcccCCCCCcEEEccCCCCCc
Q 045233 183 DISNNKIEGSIPGE-LTE-LSRPDCLSLSANK--LS-GPVPFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 183 ~Ls~n~l~~~~p~~-~~~-l~~L~~L~L~~N~--l~-~~~p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
+++.+.++...... +.+ -++|+.|++++.. +. ..+..-...+++|..||+++|....
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 88887765432211 111 2356666666543 11 1112223556777777777765543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=3.8e-05 Score=76.34 Aligned_cols=122 Identities=25% Similarity=0.309 Sum_probs=69.2
Q ss_pred CCCCEEEeccccCcCC-CCCcccc-cCCCcCCEEecccCCCC-CCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233 90 PNLESLRIQAYYYGFT-GSIPSDI-SALSKLQLLDLSLNRLS-GTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166 (325)
Q Consensus 90 ~~L~~L~l~~~~n~~~-~~~p~~l-~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 166 (325)
.+|+.|++ ++.... ..=|..+ ..+|.|+.|.+++-.+. ..+.....++|+|..||+|+.+++.. ..++.+++|
T Consensus 122 ~nL~~LdI--~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDI--SGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCc--cccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 45677777 443221 1111222 23677777777776664 23334455677777778877777732 456677777
Q ss_pred cEEEcCcC------------CCCCCcEEEccCCcCCCCC--c----hhhhCCCCCCEEECCCCcCCC
Q 045233 167 KYLDLKVT------------SMKNLTWLDISNNKIEGSI--P----GELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 167 ~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~--p----~~~~~l~~L~~L~L~~N~l~~ 215 (325)
+.|.+.+= ++++|+.||+|........ . +.-..+|.|+.||.+++.+++
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 77665432 5666777777665543221 1 112346677777777666553
No 55
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.57 E-value=7.2e-05 Score=46.36 Aligned_cols=35 Identities=34% Similarity=0.621 Sum_probs=21.7
Q ss_pred HHHHHHHHcCC-------CCCCCCCCCCCCCCCccceeeEeC
Q 045233 24 QLETKALLDTG-------WWNSSFWMANYSSDHCKWIGITCN 58 (325)
Q Consensus 24 ~~~~~~ll~~~-------~~~~~~W~~~~~~~~C~w~gv~c~ 58 (325)
++|+++|++++ ...+.+|......++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 57888888732 345788953223799999999995
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00016 Score=59.84 Aligned_cols=79 Identities=25% Similarity=0.310 Sum_probs=47.3
Q ss_pred CCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCc--hhccCCCCCcE
Q 045233 91 NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIP--STLARLTNLKY 168 (325)
Q Consensus 91 ~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~ 168 (325)
....+|+ ..|.+... +.|..++.|.+|.+.+|+|+..-|.--..+++|..|.|.+|.|. .+. +.+..+++|++
T Consensus 43 ~~d~iDL--tdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDL--TDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY 117 (233)
T ss_pred ccceecc--cccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence 4456666 55555432 34566777888888888887555544445577888888888777 221 12444555555
Q ss_pred EEcCcC
Q 045233 169 LDLKVT 174 (325)
Q Consensus 169 L~l~~n 174 (325)
|.+-+|
T Consensus 118 Ltll~N 123 (233)
T KOG1644|consen 118 LTLLGN 123 (233)
T ss_pred eeecCC
Confidence 544444
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.51 E-value=0.0001 Score=63.75 Aligned_cols=127 Identities=23% Similarity=0.195 Sum_probs=60.1
Q ss_pred ccCCCcCCEEecccCCCCCCCchhh----cCCcccceeecccCcCCCc----Cchh---------ccCCCCCcEEEcCcC
Q 045233 112 ISALSKLQLLDLSLNRLSGTIPSNI----GNLRNLVHLDLGNNNLTGP----IPST---------LARLTNLKYLDLKVT 174 (325)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l~~L~~L~Ls~N~l~~~----~p~~---------~~~l~~L~~L~l~~n 174 (325)
+-++++|+..+||.|.+....|+.+ ...+.|++|.+++|.+.-. +..+ ...-|.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 3445666666666666554444332 3345566666666655411 1101 112345555555555
Q ss_pred CC---------------CCCcEEEccCCcCCCCCc-----hhhhCCCCCCEEECCCCcCCCC----CCCcccCCCCCcEE
Q 045233 175 SM---------------KNLTWLDISNNKIEGSIP-----GELTELSRPDCLSLSANKLSGP----VPFSNKQLSTMYIV 230 (325)
Q Consensus 175 ~l---------------~~L~~L~Ls~n~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L 230 (325)
++ ..|+.+.+..|.|....- ..+..+.+|+.||+.+|-++.. +...++.++.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 21 245555566665542110 1123345566666666665532 22234445555666
Q ss_pred EccCCCCC
Q 045233 231 RLSPNKGL 238 (325)
Q Consensus 231 ~l~~N~~~ 238 (325)
.+.++-++
T Consensus 248 ~lnDClls 255 (388)
T COG5238 248 RLNDCLLS 255 (388)
T ss_pred cccchhhc
Confidence 66555443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=7.6e-05 Score=74.26 Aligned_cols=117 Identities=26% Similarity=0.338 Sum_probs=85.7
Q ss_pred CCCCCCCEEEeccccCcCCC-CCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCC-cCchhccCCC
Q 045233 87 SCFPNLESLRIQAYYYGFTG-SIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG-PIPSTLARLT 164 (325)
Q Consensus 87 ~~l~~L~~L~l~~~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~ 164 (325)
..||.|+.|.+ .+-.+.. ..-....++++|..||+|+.+++.. ..++.+++|+.|.+.+=.+.. ..-..+.+++
T Consensus 145 ~~LPsL~sL~i--~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 145 TMLPSLRSLVI--SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK 220 (699)
T ss_pred hhCcccceEEe--cCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence 35899999999 6655432 2233456789999999999999843 668899999999988876662 1123577899
Q ss_pred CCcEEEcCcC-----------------CCCCCcEEEccCCcCCCCCchhh-hCCCCCCEEE
Q 045233 165 NLKYLDLKVT-----------------SMKNLTWLDISNNKIEGSIPGEL-TELSRPDCLS 207 (325)
Q Consensus 165 ~L~~L~l~~n-----------------~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ 207 (325)
+|+.||+|.. .+|+|+.||.|++.+.+..-+.+ ...++|+.+.
T Consensus 221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 9999999865 68999999999998876544333 2344454443
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.43 E-value=0.00013 Score=62.98 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=108.4
Q ss_pred CCCCCCEEEeccccCcCCCCC----cccccCCCcCCEEecccCCCC---CCCc-------hhhcCCcccceeecccCcCC
Q 045233 88 CFPNLESLRIQAYYYGFTGSI----PSDISALSKLQLLDLSLNRLS---GTIP-------SNIGNLRNLVHLDLGNNNLT 153 (325)
Q Consensus 88 ~l~~L~~L~l~~~~n~~~~~~----p~~l~~l~~L~~L~Ls~n~l~---~~~p-------~~~~~l~~L~~L~Ls~N~l~ 153 (325)
.+..+..+++ ++|.+...- ...+.+-.+|+..+++.-... ..++ +.+-.||+|+..+||.|-+.
T Consensus 28 ~~d~~~evdL--SGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 28 MMDELVEVDL--SGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hhcceeEEec--cCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3677788888 888776543 333455677777777754332 1223 34557899999999999998
Q ss_pred CcCch----hccCCCCCcEEEcCcC------------------------CCCCCcEEEccCCcCCCCCch----hhhCCC
Q 045233 154 GPIPS----TLARLTNLKYLDLKVT------------------------SMKNLTWLDISNNKIEGSIPG----ELTELS 201 (325)
Q Consensus 154 ~~~p~----~~~~l~~L~~L~l~~n------------------------~l~~L~~L~Ls~n~l~~~~p~----~~~~l~ 201 (325)
...|+ .+++-+.|.+|.+++| .-|.|+......|++...... .+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 77665 4667789999999999 336899999999998743221 233446
Q ss_pred CCCEEECCCCcCCCC-----CCCcccCCCCCcEEEccCCCCCchH
Q 045233 202 RPDCLSLSANKLSGP-----VPFSNKQLSTMYIVRLSPNKGLGSN 241 (325)
Q Consensus 202 ~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~L~l~~N~~~~~~ 241 (325)
.|+.+.+..|.|... +-..+..+.+|++|++.+|.++--.
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g 230 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG 230 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh
Confidence 899999999988722 1123456789999999999987543
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.37 E-value=0.00071 Score=62.72 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=44.3
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC-cCCCcCchh
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN-NLTGPIPST 159 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~ 159 (325)
+..+++++.|++ ++|.+. .+|. + .++|++|.++++.--..+|..+. ++|++|++++| .+. .+|+.
T Consensus 48 ~~~~~~l~~L~I--s~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYI--KDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPES 113 (426)
T ss_pred HHHhcCCCEEEe--CCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccccc
Confidence 444688999999 777655 3452 2 24699999988544346676553 58999999988 554 56644
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.35 E-value=0.00081 Score=52.13 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=57.9
Q ss_pred cCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhc
Q 045233 81 LSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTL 160 (325)
Q Consensus 81 l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 160 (325)
++...|.++++|+.+.+ . +.+...-...|..+++|+.+.+..+ +...-...|.++++|+.+.+.+ .+.......|
T Consensus 3 i~~~~F~~~~~l~~i~~--~-~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITF--P-NTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEE--T-ST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred ECHHHHhCCCCCCEEEE--C-CCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence 45556788888888888 4 2455444556777878888888775 5544455677777788888865 4442334456
Q ss_pred cCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCC
Q 045233 161 ARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTM 227 (325)
Q Consensus 161 ~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 227 (325)
..+++|+.+++ ..+ +.......|.+. .++.+.+.. .++......|.++++|
T Consensus 78 ~~~~~l~~i~~-------------~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDI-------------PSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEE-------------TTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccc-------------Ccc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 65666655544 332 332333445555 677777664 3333444555555544
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=3.5e-05 Score=67.34 Aligned_cols=126 Identities=22% Similarity=0.252 Sum_probs=85.2
Q ss_pred CCCcCCEEecccCCCCC--CCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCC
Q 045233 114 ALSKLQLLDLSLNRLSG--TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNL 179 (325)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L 179 (325)
..+.++.+||.+|.++. .+...+.++|.|++|+|+.|.+...+...-..+.+|+.|-|.+. .+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46889999999999983 45556789999999999999998443322245678999988776 56778
Q ss_pred cEEEccCCcCCCC---------Cchh--------------------hhCCCCCCEEECCCCcCCCCC-CCcccCCCCCcE
Q 045233 180 TWLDISNNKIEGS---------IPGE--------------------LTELSRPDCLSLSANKLSGPV-PFSNKQLSTMYI 229 (325)
Q Consensus 180 ~~L~Ls~n~l~~~---------~p~~--------------------~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~ 229 (325)
++|+++.|.+.-. +... -..++++..+.+..|++...- ......++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 8888888843211 0000 012456666666677665432 234455667777
Q ss_pred EEccCCCCCc
Q 045233 230 VRLSPNKGLG 239 (325)
Q Consensus 230 L~l~~N~~~~ 239 (325)
|+++.|++-.
T Consensus 229 LnL~~~~ids 238 (418)
T KOG2982|consen 229 LNLGANNIDS 238 (418)
T ss_pred hhhccccccc
Confidence 8888887643
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.20 E-value=0.00015 Score=62.18 Aligned_cols=61 Identities=34% Similarity=0.459 Sum_probs=37.1
Q ss_pred CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC--CCCCCCchhhcCCcccceeecccCcCC
Q 045233 89 FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN--RLSGTIPSNIGNLRNLVHLDLGNNNLT 153 (325)
Q Consensus 89 l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 153 (325)
+..|+.|++ .+..++.. ..+..+++|++|.++.| .+.+.++.....+++|++|++++|++.
T Consensus 42 ~~~le~ls~--~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSV--INVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhh--hccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334444444 33333322 23456677888888888 555555555556688888888888876
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00022 Score=61.18 Aligned_cols=109 Identities=23% Similarity=0.263 Sum_probs=65.2
Q ss_pred CcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC--cCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEcc
Q 045233 108 IPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN--NLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDIS 185 (325)
Q Consensus 108 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls 185 (325)
+......+..|+.|.+.+..++.. ..+..+++|++|.++.| ++++.++.....+++|++|+++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~------------ 100 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG------------ 100 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC------------
Confidence 444455567777888887777622 23567889999999999 66655555445556666555554
Q ss_pred CCcCCC--CCchhhhCCCCCCEEECCCCcCCCCC---CCcccCCCCCcEEEc
Q 045233 186 NNKIEG--SIPGELTELSRPDCLSLSANKLSGPV---PFSNKQLSTMYIVRL 232 (325)
Q Consensus 186 ~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~l 232 (325)
|++.. .+ ..+..+.+|..|++.+|..+..- -..|.-+++|.+++-
T Consensus 101 -Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 101 -NKIKDLSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred -Ccccccccc-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 44441 11 13455666777777777665421 122444566666654
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.10 E-value=0.0013 Score=61.10 Aligned_cols=120 Identities=16% Similarity=0.234 Sum_probs=73.9
Q ss_pred cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC-CCCCCCchhhcCCcccceeec
Q 045233 69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN-RLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L 147 (325)
..|+++.+.+..++.. -++|+.|.+ .++.-...+|..+. ++|++|++++| .+. .+|+ +|+.|++
T Consensus 55 ~~L~Is~c~L~sLP~L----P~sLtsL~L--snc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L 119 (426)
T PRK15386 55 GRLYIKDCDIESLPVL----PNELTEITI--ENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEI 119 (426)
T ss_pred CEEEeCCCCCcccCCC----CCCCcEEEc--cCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEe
Confidence 3444555555555521 246999999 65544456665553 68999999998 554 5554 4777778
Q ss_pred ccCcCC--CcCchhccCCCCCcEEEcCcC----------CC-CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCc
Q 045233 148 GNNNLT--GPIPSTLARLTNLKYLDLKVT----------SM-KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANK 212 (325)
Q Consensus 148 s~N~l~--~~~p~~~~~l~~L~~L~l~~n----------~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~ 212 (325)
+.+... +.+|+ +|+.|.+..+ .+ ++|++|++++|... ..|+.+. .+|+.|+++.|.
T Consensus 120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 776653 24444 3445554321 12 47888999888765 3443333 478888887763
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.99 E-value=0.0022 Score=49.64 Aligned_cols=108 Identities=12% Similarity=0.164 Sum_probs=60.6
Q ss_pred ccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcC
Q 045233 110 SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKI 189 (325)
Q Consensus 110 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l 189 (325)
..|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +.......|.++++|+.+.+ .+ .+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~-------------~~-~~ 69 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF-------------PN-NL 69 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE-------------TS-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc-------------cc-cc
Confidence 4577788899998875 566455566888888999998875 66344456776666666544 33 33
Q ss_pred CCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCC
Q 045233 190 EGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235 (325)
Q Consensus 190 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 235 (325)
.......|..+++++.+++..+ ++......+... +++.+.+..+
T Consensus 70 ~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 70 KSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp -EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB
T ss_pred cccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCC
Confidence 3234456777899999999776 554445667776 8888887653
No 67
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=96.89 E-value=0.00086 Score=62.16 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=24.6
Q ss_pred cceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 294 DYLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..+||+|+||.||||.| +++.||||.|
T Consensus 215 ~eli~~Grfg~V~KaqL----~~~~VAVKif 241 (534)
T KOG3653|consen 215 LELIGRGRFGCVWKAQL----DNRLVAVKIF 241 (534)
T ss_pred HHHhhcCccceeehhhc----cCceeEEEec
Confidence 37899999999999999 4799999987
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.20 E-value=0.0018 Score=33.66 Aligned_cols=18 Identities=61% Similarity=0.837 Sum_probs=8.0
Q ss_pred cceeecccCcCCCcCchhc
Q 045233 142 LVHLDLGNNNLTGPIPSTL 160 (325)
Q Consensus 142 L~~L~Ls~N~l~~~~p~~~ 160 (325)
|++|||++|+++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 344333
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.00035 Score=60.63 Aligned_cols=61 Identities=26% Similarity=0.333 Sum_probs=26.1
Q ss_pred CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCc--hhhcCCcccceeecccCcCCC
Q 045233 89 FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIP--SNIGNLRNLVHLDLGNNNLTG 154 (325)
Q Consensus 89 l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~ 154 (325)
++.|++|.| +-|.++..-| +..+++|++|+|..|.|.. +. ..+.++++|+.|.|..|.-.|
T Consensus 40 Mp~lEVLsL--SvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 40 MPLLEVLSL--SVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred cccceeEEe--eccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCccc
Confidence 444455544 4444443322 3444444444554444441 11 123344444444444444443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.00041 Score=60.26 Aligned_cols=77 Identities=26% Similarity=0.368 Sum_probs=46.4
Q ss_pred CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCch--hccCCCCC
Q 045233 89 FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS--TLARLTNL 166 (325)
Q Consensus 89 l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L 166 (325)
+.+.+.|+. -++.+.+. .....++.|+.|.||-|.++..-| +..+++|++|+|..|.|. .+.+ .+.++++|
T Consensus 18 l~~vkKLNc--wg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNC--WGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcc--cCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence 445556666 56655542 224567778888888888874333 667788888888888777 3322 33444444
Q ss_pred cEEEcC
Q 045233 167 KYLDLK 172 (325)
Q Consensus 167 ~~L~l~ 172 (325)
+.|-|.
T Consensus 91 r~LWL~ 96 (388)
T KOG2123|consen 91 RTLWLD 96 (388)
T ss_pred hhHhhc
Confidence 444333
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.80 E-value=0.0035 Score=32.57 Aligned_cols=21 Identities=52% Similarity=0.762 Sum_probs=15.2
Q ss_pred cCCEEecccCCCCCCCchhhcC
Q 045233 117 KLQLLDLSLNRLSGTIPSNIGN 138 (325)
Q Consensus 117 ~L~~L~Ls~n~l~~~~p~~~~~ 138 (325)
+|++||+++|+++ .+|+.|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4678888888887 67766654
No 72
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=95.51 E-value=0.012 Score=56.76 Aligned_cols=35 Identities=6% Similarity=-0.006 Sum_probs=27.4
Q ss_pred hcCCc--ceeecCCCcEEEEEeee--------------cCCCCcEEEEEEe
Q 045233 290 TEGFD--YLIQFPKFESFALSFLF--------------RSSTGTFLIIIFY 324 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~--------------~~~~~~~vav~~~ 324 (325)
+++|+ ++||+||||.||+|.+. ...+++.||||-.
T Consensus 144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l 194 (507)
T PLN03224 144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRV 194 (507)
T ss_pred ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEe
Confidence 66776 89999999999999752 1246688999963
No 73
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.41 E-value=0.031 Score=51.82 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=24.3
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+||+|-||.|++|.+ .|+-||||+|
T Consensus 217 e~IGkGRyGEVwrG~w----rGe~VAVKiF 242 (513)
T KOG2052|consen 217 EIIGKGRFGEVWRGRW----RGEDVAVKIF 242 (513)
T ss_pred EEecCccccceeeccc----cCCceEEEEe
Confidence 6789999999999999 5999999987
No 74
>PTZ00284 protein kinase; Provisional
Probab=95.21 E-value=0.014 Score=55.96 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=30.5
Q ss_pred HHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 285 DLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 285 ~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
++...+++|. ..||+|+||.||++... .+++.||||++
T Consensus 123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~--~~~~~vAvK~i 162 (467)
T PTZ00284 123 DIDVSTQRFKILSLLGEGTFGKVVEAWDR--KRKEYCAVKIV 162 (467)
T ss_pred ccccCCCcEEEEEEEEeccCEEEEEEEEc--CCCeEEEEEEE
Confidence 3334556665 78999999999999985 67899999975
No 75
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=95.06 E-value=0.012 Score=58.15 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=38.8
Q ss_pred CccccHHHHHHHhcCCc-----------ceeecCCCcEEEEEeee-cCCCCcEEEEEE
Q 045233 278 DRSIVYEDLIEATEGFD-----------YLIQFPKFESFALSFLF-RSSTGTFLIIIF 323 (325)
Q Consensus 278 ~~~~~~~~l~~~t~nf~-----------~~ig~g~~g~vy~g~l~-~~~~~~~vav~~ 323 (325)
-+++||+|--.|...|. .+||.|.||.||+|.|. ++.....||||-
T Consensus 607 iDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKT 664 (996)
T KOG0196|consen 607 IDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKT 664 (996)
T ss_pred cCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEee
Confidence 46789999888877774 88999999999999997 567778999984
No 76
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=94.99 E-value=0.026 Score=55.47 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=28.4
Q ss_pred HhcCCc--ceeecCCCcEEEEEeeecCCC----CcEEEEEEe
Q 045233 289 ATEGFD--YLIQFPKFESFALSFLFRSST----GTFLIIIFY 324 (325)
Q Consensus 289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~----~~~vav~~~ 324 (325)
.+++|. ..||+|+||.||+|+.. .+ +..||||..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~--~~~~~~~~~vAvK~~ 169 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLV--NKQSKKEGKYVLKKA 169 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEc--CCccccCcEEEEEEe
Confidence 456675 88999999999999995 55 799999963
No 77
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=94.80 E-value=0.022 Score=54.68 Aligned_cols=25 Identities=12% Similarity=-0.002 Sum_probs=22.1
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|.||+||+|.+. | .||||+|
T Consensus 398 ~rIGsGsFGtV~Rg~wh----G-dVAVK~L 422 (678)
T KOG0193|consen 398 ERIGSGSFGTVYRGRWH----G-DVAVKLL 422 (678)
T ss_pred ceeccccccceeecccc----c-ceEEEEE
Confidence 68999999999999994 3 5899987
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.46 E-value=0.0014 Score=55.62 Aligned_cols=91 Identities=21% Similarity=0.286 Sum_probs=58.9
Q ss_pred cccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCch
Q 045233 79 AQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS 158 (325)
Q Consensus 79 ~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 158 (325)
..++.-.+..+...+.||+ +.|++.. +...++-++.|..||++.|++. ..|..++....+..+++..|..+ ..|.
T Consensus 31 s~~~v~ei~~~kr~tvld~--~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~ 105 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDL--SSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK 105 (326)
T ss_pred cccchhhhhccceeeeehh--hhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence 3444444566677777777 5665432 2334556667777777777776 67777777777777777777776 6677
Q ss_pred hccCCCCCcEEEcCcC
Q 045233 159 TLARLTNLKYLDLKVT 174 (325)
Q Consensus 159 ~~~~l~~L~~L~l~~n 174 (325)
++...++++++++..|
T Consensus 106 s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKT 121 (326)
T ss_pred cccccCCcchhhhccC
Confidence 7777666666655444
No 79
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=93.95 E-value=0.053 Score=50.10 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=23.0
Q ss_pred ceeecCCCcEEEEEeeecCCCCcE-EEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTF-LIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~-vav~~~ 324 (325)
..||.|+||.||+|+. .|+. ||||.|
T Consensus 47 ~~iG~G~~g~V~~~~~----~g~~~vavK~~ 73 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKW----RGTDVVAVKII 73 (362)
T ss_pred hhcccCCceeEEEEEe----CCceeEEEEEe
Confidence 3499999999999999 4777 999987
No 80
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=93.94 E-value=0.055 Score=51.25 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=29.4
Q ss_pred HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..++|+ ..||+||||.||.++-. .+|.+.|+|+.
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk--~Tg~iyAmK~L 174 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKK--DTGEIYAMKIL 174 (550)
T ss_pred CcccchhheeeccccceeEEEEEEc--cCCcEEeeecc
Confidence 356676 78999999999999997 89999999963
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.90 E-value=0.029 Score=27.10 Aligned_cols=10 Identities=60% Similarity=0.757 Sum_probs=3.1
Q ss_pred cceeecccCc
Q 045233 142 LVHLDLGNNN 151 (325)
Q Consensus 142 L~~L~Ls~N~ 151 (325)
|+.|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 82
>smart00090 RIO RIO-like kinase.
Probab=93.87 E-value=0.068 Score=46.39 Aligned_cols=27 Identities=15% Similarity=0.023 Sum_probs=24.7
Q ss_pred ceeecCCCcEEEEEe--eecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSF--LFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~--l~~~~~~~~vav~~~ 324 (325)
..||.|+||.||+|+ . .+|+.||||.+
T Consensus 34 ~~Lg~G~~g~Vy~a~~~~---~~g~~vaiK~~ 62 (237)
T smart00090 34 GCISTGKEANVYHALDFD---GSGKERAVKIY 62 (237)
T ss_pred CeeccCcceeEEEEEecC---CCCcEEEEEEE
Confidence 589999999999998 5 78999999986
No 83
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=93.87 E-value=0.048 Score=52.75 Aligned_cols=28 Identities=7% Similarity=-0.061 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++.. .+|+.||||.+
T Consensus 38 ~~LG~G~fG~Vy~a~~~--~~g~~vAvK~i 65 (496)
T PTZ00283 38 RVLGSGATGTVLCAKRV--SDGEPFAVKVV 65 (496)
T ss_pred EEEecCCCEEEEEEEEc--CCCCEEEEEEE
Confidence 78999999999999875 78999999975
No 84
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=93.75 E-value=0.061 Score=49.92 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 283 YEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 283 ~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
+.++....++|. ..||+|+||.||++.-. .+++.||+|++
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~--~~~~~~aiK~i 76 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHK--STRKVYAMKLL 76 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEEC--CCCcEEEEEEE
Confidence 334444556665 78999999999999986 78899999985
No 85
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=93.61 E-value=0.036 Score=49.69 Aligned_cols=27 Identities=7% Similarity=-0.141 Sum_probs=25.0
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
+.|++|+||.||+|+=. .+++.||.|-
T Consensus 82 nrI~EGtyGiVYRakdk--~t~eIVALKr 108 (419)
T KOG0663|consen 82 NRIEEGTYGVVYRAKDK--KTDEIVALKR 108 (419)
T ss_pred hhcccCcceeEEEeccC--CcceeEEeee
Confidence 78999999999999997 8999999984
No 86
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=93.58 E-value=0.065 Score=49.69 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=27.5
Q ss_pred hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.++|. ..||+|+||.||+++.. .+++.||+|++
T Consensus 42 ~~~y~~~~~lG~G~fg~Vy~~~~~--~~~~~~aiK~~ 76 (370)
T cd05621 42 AEDYDVVKVIGRGAFGEVQLVRHK--SSQKVYAMKLL 76 (370)
T ss_pred HHHCeEEEEEEecCCeEEEEEEEC--CCCCEEEEEEE
Confidence 34444 78999999999999985 77899999975
No 87
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=93.57 E-value=0.076 Score=48.76 Aligned_cols=28 Identities=11% Similarity=-0.100 Sum_probs=25.3
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++.. .+|+.||||++
T Consensus 80 ~~lg~G~~g~V~~~~~~--~~~~~vaiK~~ 107 (353)
T PLN00034 80 NRIGSGAGGTVYKVIHR--PTGRLYALKVI 107 (353)
T ss_pred hhccCCCCeEEEEEEEC--CCCCEEEEEEE
Confidence 57999999999999985 78999999986
No 88
>PTZ00036 glycogen synthase kinase; Provisional
Probab=93.52 E-value=0.081 Score=50.34 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=25.1
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+.. .+|+.||||.+
T Consensus 72 ~~LG~G~fg~Vy~~~~~--~~~~~vAiK~i 99 (440)
T PTZ00036 72 NIIGNGSFGVVYEAICI--DTSEKVAIKKV 99 (440)
T ss_pred EEEEeCCCEEEEEEEEC--CCCCEEEEEEE
Confidence 78999999999999985 67899999965
No 89
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=93.22 E-value=0.057 Score=50.04 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=27.7
Q ss_pred hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.++|. ..||+|+||.||+++-. .+|+.||||.+
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~--~~~~~~aiK~~ 76 (370)
T cd05596 42 AEDFDVIKVIGRGAFGEVQLVRHK--SSKQVYAMKLL 76 (370)
T ss_pred HHHcEEEEEEeeCCCEEEEEEEEC--CCCCEEEEEEE
Confidence 34454 78999999999999986 78999999975
No 90
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=93.02 E-value=0.079 Score=50.37 Aligned_cols=28 Identities=11% Similarity=-0.032 Sum_probs=26.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..+|+|-||+||-|+-- .+|+.||||++
T Consensus 570 evLGSGQFG~VYgg~hR--ktGrdVAvKvI 597 (888)
T KOG4236|consen 570 EVLGSGQFGTVYGGKHR--KTGRDVAVKVI 597 (888)
T ss_pred hhccCCcceeeecceec--ccCceeeeeee
Confidence 88999999999999997 89999999986
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.02 E-value=0.0018 Score=61.85 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=95.0
Q ss_pred cCCCCCCCEEEeccccCcCCCCCc----ccccCC-CcCCEEecccCCCCC----CCchhhcCCcccceeecccCcCCC--
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIP----SDISAL-SKLQLLDLSLNRLSG----TIPSNIGNLRNLVHLDLGNNNLTG-- 154 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p----~~l~~l-~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~-- 154 (325)
+...++|+.|++ +.|.+.+.-- ..+... ..|++|++..|.++. .+...+.....++.++++.|.+..
T Consensus 111 l~t~~~L~~L~l--~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 111 LKTLPTLGQLDL--SGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred hcccccHhHhhc--ccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence 556777888888 7777663211 112222 456677777777763 445556667778888888887741
Q ss_pred --cCchhcc----CCCCCcEEEcCcCCC---------------CC-CcEEEccCCcCCCC----CchhhhCC-CCCCEEE
Q 045233 155 --PIPSTLA----RLTNLKYLDLKVTSM---------------KN-LTWLDISNNKIEGS----IPGELTEL-SRPDCLS 207 (325)
Q Consensus 155 --~~p~~~~----~l~~L~~L~l~~n~l---------------~~-L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~ 207 (325)
.++..+. ...++++|.+++|.+ +. +..+++..|.+.+. ....+..+ ..++.++
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence 1222333 466777787777622 23 55578888877643 22334445 5678888
Q ss_pred CCCCcCCCC----CCCcccCCCCCcEEEccCCCCCch
Q 045233 208 LSANKLSGP----VPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 208 L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
++.|.|+.. ....+..++.++.+.++.|++...
T Consensus 269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 888888753 233445566778888888877654
No 92
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=92.83 E-value=0.085 Score=49.75 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=30.1
Q ss_pred ecCCccccHHHHHHHhcCCcceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 275 WNYDRSIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 275 ~~~~~~~~~~~l~~~t~nf~~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
|...+...|+.|. .||+|+||.||+++=. .+|..||+|=
T Consensus 111 w~~r~~~~feki~--------kIGeGTyg~VYkAr~~--~tgkivALKK 149 (560)
T KOG0600|consen 111 WGPRRADSFEKIE--------KIGEGTYGQVYKARDL--ETGKIVALKK 149 (560)
T ss_pred ccccchHHHHHHH--------HhcCcchhheeEeeec--ccCcEEEEEE
Confidence 3333345566654 7999999999999986 9999999984
No 93
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=92.66 E-value=0.13 Score=48.91 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||.|++|.||+|++ .+|+.||||+.
T Consensus 123 ~plasaSigQVh~A~l---~~G~~VaVKv~ 149 (437)
T TIGR01982 123 KPLAAASIAQVHRARL---VDGKEVAVKVL 149 (437)
T ss_pred cceeeeehhheEEEEe---cCCCEEEEEee
Confidence 6799999999999999 89999999985
No 94
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=92.19 E-value=0.14 Score=47.51 Aligned_cols=30 Identities=7% Similarity=0.090 Sum_probs=24.4
Q ss_pred ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~ 324 (325)
..||+||||.||+++.. ...++..||||.+
T Consensus 41 ~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l 73 (375)
T cd05104 41 KTLGAGAFGKVVEATAYGLFKSDAAMTVAVKML 73 (375)
T ss_pred heecCCccceEEEEEEeccccCccceeEEEEec
Confidence 79999999999999753 2356779999975
No 95
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.19 E-value=0.0058 Score=51.93 Aligned_cols=99 Identities=22% Similarity=0.290 Sum_probs=72.2
Q ss_pred hcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 136 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 215 (325)
+......+.||++.|++. .+-..|..+ +.+..|+++.|++. ..|..++....+..+++..|+.+
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~-------------t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~- 101 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSIL-------------TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS- 101 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHH-------------HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-
Confidence 444556666777776665 222233322 34566788888888 78889999999999999999888
Q ss_pred CCCCcccCCCCCcEEEccCCCCCchHHHHHHHHHH
Q 045233 216 PVPFSNKQLSTMYIVRLSPNKGLGSNFIIVLACLL 250 (325)
Q Consensus 216 ~~p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 250 (325)
..|.+++..+.++.+++.+|++.-...-++..|.+
T Consensus 102 ~~p~s~~k~~~~k~~e~k~~~~~~~~~~~v~~c~~ 136 (326)
T KOG0473|consen 102 QQPKSQKKEPHPKKNEQKKTEFFRKLFGFVWSCVF 136 (326)
T ss_pred hCCccccccCCcchhhhccCcchHHHHhHhhhhhh
Confidence 67889999999999999999987655555555543
No 96
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=91.77 E-value=0.054 Score=41.59 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=26.6
Q ss_pred cCCc-ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 291 EGFD-YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 291 ~nf~-~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
+.|+ ..|+.|+.|.||+|+| .+|+.||||+
T Consensus 12 ~~fd~~PlasASiaQVh~a~l---~~g~~VaVKV 42 (119)
T PF03109_consen 12 DEFDPEPLASASIAQVHRARL---KDGEEVAVKV 42 (119)
T ss_pred HHCCcchhhheehhhheeeee---cccchhhhhh
Confidence 4455 7899999999999999 8899999997
No 97
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=91.53 E-value=0.19 Score=47.22 Aligned_cols=30 Identities=7% Similarity=0.021 Sum_probs=23.4
Q ss_pred ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR---SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~ 324 (325)
.+||+|+||.||+|+... ...+..||||.+
T Consensus 43 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l 75 (400)
T cd05105 43 RILGSGAFGKVVEGTAYGLSRSQPVMKVAVKML 75 (400)
T ss_pred heecCCCCceEEEEEEcccCCCCCceEEEEEec
Confidence 789999999999998631 233457999975
No 98
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=90.94 E-value=0.18 Score=46.73 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=23.5
Q ss_pred ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++.. ...++..||||.+
T Consensus 44 ~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~ 76 (374)
T cd05106 44 KTLGAGAFGKVVEATAFGLGKEDNVLRVAVKML 76 (374)
T ss_pred heecCCCcccEEEEEEecCCcccccceeEEEec
Confidence 78999999999998853 1245568999975
No 99
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=90.73 E-value=0.21 Score=50.16 Aligned_cols=32 Identities=9% Similarity=0.008 Sum_probs=24.9
Q ss_pred CcceeecCCCcEEEEEeeecCC--CCcEEEEEEe
Q 045233 293 FDYLIQFPKFESFALSFLFRSS--TGTFLIIIFY 324 (325)
Q Consensus 293 f~~~ig~g~~g~vy~g~l~~~~--~~~~vav~~~ 324 (325)
-+.+||+|+||.||+|.+.|.+ -...||||++
T Consensus 700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl 733 (1177)
T KOG1025|consen 700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVL 733 (1177)
T ss_pred hhceeccccceeEEeeeEecCCceecceeEEEEe
Confidence 3589999999999999998431 2267888875
No 100
>PHA03209 serine/threonine kinase US3; Provisional
Probab=90.67 E-value=0.32 Score=44.76 Aligned_cols=32 Identities=3% Similarity=-0.062 Sum_probs=26.7
Q ss_pred hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
..+|. ..||+|+||.||+++.. .+++.||+|.
T Consensus 65 ~~~y~~~~~lg~G~~g~Vy~~~~~--~~~~~valK~ 98 (357)
T PHA03209 65 SLGYTVIKTLTPGSEGRVFVATKP--GQPDPVVLKI 98 (357)
T ss_pred hcCcEEEEEecCCCCeEEEEEEEC--CCCceEEEEe
Confidence 34555 78999999999999985 6788999996
No 101
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=90.58 E-value=0.32 Score=44.45 Aligned_cols=29 Identities=10% Similarity=-0.033 Sum_probs=23.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++.. ..++..||||.+
T Consensus 36 ~~ig~G~~g~Vy~a~~~-~~~~~~vavK~~ 64 (340)
T PTZ00426 36 RTLGTGSFGRVILATYK-NEDFPPVAIKRF 64 (340)
T ss_pred EEEeecCCeEEEEEEEE-CCCCeEEEEEEE
Confidence 78999999999999863 133478999976
No 102
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.51 E-value=0.0034 Score=60.00 Aligned_cols=124 Identities=28% Similarity=0.307 Sum_probs=88.2
Q ss_pred CCCCEEEeccccCcCCCC----CcccccCCCcCCEEecccCCCC----CCCchhhc----CCcccceeecccCcCCCcC-
Q 045233 90 PNLESLRIQAYYYGFTGS----IPSDISALSKLQLLDLSLNRLS----GTIPSNIG----NLRNLVHLDLGNNNLTGPI- 156 (325)
Q Consensus 90 ~~L~~L~l~~~~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~----~l~~L~~L~Ls~N~l~~~~- 156 (325)
..+++|++ ..|.++.. +...+.....++.++++.|.+. -.++..+. ...++++|.+++|.++...
T Consensus 144 ~~l~~L~l--~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c 221 (478)
T KOG4308|consen 144 CLLQTLEL--VSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSC 221 (478)
T ss_pred HHHHHHHh--hcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHH
Confidence 55677887 66766643 4455667888999999999884 12333344 4778999999999988321
Q ss_pred ---chhccCCCC-CcEEEcCcC---------------CC-CCCcEEEccCCcCCCCC----chhhhCCCCCCEEECCCCc
Q 045233 157 ---PSTLARLTN-LKYLDLKVT---------------SM-KNLTWLDISNNKIEGSI----PGELTELSRPDCLSLSANK 212 (325)
Q Consensus 157 ---p~~~~~l~~-L~~L~l~~n---------------~l-~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~N~ 212 (325)
...+...++ +..|++..| .+ ..++.++++.|.++... +..+...+.++.+.+++|.
T Consensus 222 ~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 222 ALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 123444555 677888888 22 46789999999998654 3455667789999999999
Q ss_pred CCC
Q 045233 213 LSG 215 (325)
Q Consensus 213 l~~ 215 (325)
+..
T Consensus 302 l~~ 304 (478)
T KOG4308|consen 302 LTD 304 (478)
T ss_pred ccc
Confidence 885
No 103
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.15 E-value=0.22 Score=26.66 Aligned_cols=13 Identities=62% Similarity=0.848 Sum_probs=5.7
Q ss_pred ccceeecccCcCC
Q 045233 141 NLVHLDLGNNNLT 153 (325)
Q Consensus 141 ~L~~L~Ls~N~l~ 153 (325)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 104
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.15 E-value=0.22 Score=26.66 Aligned_cols=13 Identities=62% Similarity=0.848 Sum_probs=5.7
Q ss_pred ccceeecccCcCC
Q 045233 141 NLVHLDLGNNNLT 153 (325)
Q Consensus 141 ~L~~L~Ls~N~l~ 153 (325)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 105
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.97 E-value=0.11 Score=49.45 Aligned_cols=100 Identities=27% Similarity=0.158 Sum_probs=58.8
Q ss_pred CCCCCCEEEeccccCcCCCC--CcccccCCCcCCEEecccC-CCCCCC----chhhcCCcccceeecccCc-CCCcCchh
Q 045233 88 CFPNLESLRIQAYYYGFTGS--IPSDISALSKLQLLDLSLN-RLSGTI----PSNIGNLRNLVHLDLGNNN-LTGPIPST 159 (325)
Q Consensus 88 ~l~~L~~L~l~~~~n~~~~~--~p~~l~~l~~L~~L~Ls~n-~l~~~~----p~~~~~l~~L~~L~Ls~N~-l~~~~p~~ 159 (325)
.++.|+.|.+ ..+.-... +-.....++.|+.|+++++ ...... ......+++|+.|+++++. ++...-..
T Consensus 186 ~~~~L~~l~l--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSL--SGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhh--cccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 3677777777 44432222 2344556788888888763 211111 1233456778888888877 55333333
Q ss_pred cc-CCCCCcEEEcCcC-------------CCCCCcEEEccCCcC
Q 045233 160 LA-RLTNLKYLDLKVT-------------SMKNLTWLDISNNKI 189 (325)
Q Consensus 160 ~~-~l~~L~~L~l~~n-------------~l~~L~~L~Ls~n~l 189 (325)
+. .+++|+.|.+..+ .++.|++|+++++..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 33 2677888776554 456788888877654
No 106
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.67 E-value=0.38 Score=47.08 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=28.4
Q ss_pred hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
.++|. .++|+|.||+|+.+.+. ++++.-|||+
T Consensus 367 l~~F~~l~vLGkGsFGkV~lae~k--~~~e~yAIK~ 400 (694)
T KOG0694|consen 367 LDDFRLLAVLGRGSFGKVLLAELK--GTNEYYAIKV 400 (694)
T ss_pred ccceEEEEEeccCcCceEEEEEEc--CCCcEEEEEE
Confidence 45565 78999999999999998 8999999997
No 107
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=89.63 E-value=0.34 Score=46.19 Aligned_cols=28 Identities=11% Similarity=-0.085 Sum_probs=21.5
Q ss_pred ceeecCCCcEEEEEeeecCCCC---cEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTG---TFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~---~~vav~~ 323 (325)
..+|+|.||.||+|+|.. .++ ..||||.
T Consensus 163 kkLGeGaFGeV~~G~l~~-~~~~~~~~VAvK~ 193 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKGKLKL-KNGFKVVPVAVKT 193 (474)
T ss_pred ceeecccccEEEEEEEEe-cCCceeeeeEEEe
Confidence 699999999999999962 212 2289984
No 108
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.55 E-value=0.35 Score=25.88 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=7.9
Q ss_pred CCCcEEEccCCcCC
Q 045233 177 KNLTWLDISNNKIE 190 (325)
Q Consensus 177 ~~L~~L~Ls~n~l~ 190 (325)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555566666555
No 109
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.55 E-value=0.35 Score=25.88 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=7.9
Q ss_pred CCCcEEEccCCcCC
Q 045233 177 KNLTWLDISNNKIE 190 (325)
Q Consensus 177 ~~L~~L~Ls~n~l~ 190 (325)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555566666555
No 110
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=89.30 E-value=0.34 Score=50.02 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=24.3
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
..||+||||+||+|+= .+|..||+|+
T Consensus 704 ~e~G~g~y~~vy~a~~---~~~~~~alK~ 729 (974)
T KOG1166|consen 704 KEIGEGSYGSVYVATH---SNGKLVALKV 729 (974)
T ss_pred eeeccccceEEEEeec---CCCcEEEEEe
Confidence 7789999999999999 7899999996
No 111
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=89.17 E-value=0.42 Score=46.36 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=25.7
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+||+|.||.|.++.=. .+++.||||+.
T Consensus 192 e~LGkGtFGQVvk~~d~--~T~e~VAIKIi 219 (586)
T KOG0667|consen 192 EVLGKGSFGQVVKAYDH--KTGEIVAIKII 219 (586)
T ss_pred EEecccccceeEEEEec--CCCcEEEEEee
Confidence 68999999999999986 88999999985
No 112
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=89.07 E-value=0.49 Score=46.08 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=25.7
Q ss_pred Cc-ceeecCCCcEEEEEeeecCCC-CcEEEEEEe
Q 045233 293 FD-YLIQFPKFESFALSFLFRSST-GTFLIIIFY 324 (325)
Q Consensus 293 f~-~~ig~g~~g~vy~g~l~~~~~-~~~vav~~~ 324 (325)
|+ ..||+|++|.||++++ .+ |+.||||+.
T Consensus 122 fd~~PlasaSiaQVh~A~l---~~~G~~VAVKV~ 152 (537)
T PRK04750 122 FDIKPLASASIAQVHFARL---KDNGREVVVKVL 152 (537)
T ss_pred cChhhhcCCCccEEEEEEE---CCCCCEEEEEEe
Confidence 55 6799999999999999 66 999999984
No 113
>PHA03212 serine/threonine kinase US3; Provisional
Probab=88.51 E-value=0.52 Score=44.10 Aligned_cols=27 Identities=7% Similarity=-0.283 Sum_probs=24.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
..||+|+||.||++.-. .+++.||||.
T Consensus 98 ~~lg~G~~g~V~~~~d~--~~~~~vaiK~ 124 (391)
T PHA03212 98 ETFTPGAEGFAFACIDN--KTCEHVVIKA 124 (391)
T ss_pred EEEcCCCCeEEEEEEEC--CCCCEEEEec
Confidence 78999999999999885 7899999985
No 114
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=88.36 E-value=0.48 Score=44.54 Aligned_cols=30 Identities=7% Similarity=-0.037 Sum_probs=23.9
Q ss_pred ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR---SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~ 324 (325)
..||+|+||.||+++... ...+..||||.+
T Consensus 43 ~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l 75 (401)
T cd05107 43 RTLGSGAFGRVVEATAHGLSHSQSTMKVAVKML 75 (401)
T ss_pred hhccCCCceeEEEEEEcCCCCCCCceEEEEEec
Confidence 689999999999999741 134578999975
No 115
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.95 E-value=0.38 Score=46.60 Aligned_cols=27 Identities=11% Similarity=-0.019 Sum_probs=24.1
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
.-||-|+||.||.+.=. .+.++||||-
T Consensus 32 rEIGHGSFGAVYfArd~--~n~evVAIKK 58 (948)
T KOG0577|consen 32 REIGHGSFGAVYFARDV--RNSEVVAIKK 58 (948)
T ss_pred HHhcCCccceeEEeecc--Cccceeeeee
Confidence 35899999999999987 8999999983
No 116
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=86.93 E-value=0.28 Score=51.11 Aligned_cols=36 Identities=17% Similarity=-0.031 Sum_probs=29.2
Q ss_pred HHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 287 IEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 287 ~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+.-++|. .++|+||||.||+.+=. =||+.-|||=+
T Consensus 475 SRY~~DFEEL~lLGkGGFG~VvkVRNK--lDGr~YAIKKI 512 (1351)
T KOG1035|consen 475 SRYLNDFEELELLGKGGFGSVVKVRNK--LDGREYAIKKI 512 (1351)
T ss_pred hhHhhhhHHHHHhcCCCCceEEEEeec--ccchhhhhhhc
Confidence 45666776 78999999999998765 68999999843
No 117
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.87 E-value=0.14 Score=42.67 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=17.0
Q ss_pred CCEEecccCCCCCCCchhhcCCcccceeecccCc
Q 045233 118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNN 151 (325)
Q Consensus 118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 151 (325)
++.+|.++..|..+--+.+.+++.++.|.+.++.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 4555555555554433444445555555444443
No 118
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=86.83 E-value=0.58 Score=41.79 Aligned_cols=30 Identities=7% Similarity=0.036 Sum_probs=23.9
Q ss_pred ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~ 324 (325)
+.||+|+||.||+++.. ...++..||||.+
T Consensus 41 ~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~ 73 (302)
T cd05055 41 KTLGAGAFGKVVEATAYGLSKSDAVMKVAVKML 73 (302)
T ss_pred ceeeccCCeeEEEEEEecCCCCCceeEEEEEec
Confidence 78999999999999853 1245678999975
No 119
>PHA03211 serine/threonine kinase US3; Provisional
Probab=86.24 E-value=0.78 Score=44.00 Aligned_cols=27 Identities=4% Similarity=-0.293 Sum_probs=24.3
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
..||+|+||.||++... .+++.||||.
T Consensus 175 ~~Lg~G~~G~Vy~a~~~--~~~~~vavK~ 201 (461)
T PHA03211 175 RALTPGSEGCVFESSHP--DYPQRVVVKA 201 (461)
T ss_pred EEEccCCCeEEEEEEEC--CCCCEEEEec
Confidence 78999999999999986 6789999995
No 120
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.77 E-value=0.15 Score=26.76 Aligned_cols=12 Identities=58% Similarity=0.753 Sum_probs=4.0
Q ss_pred CcEEEccCCcCC
Q 045233 179 LTWLDISNNKIE 190 (325)
Q Consensus 179 L~~L~Ls~n~l~ 190 (325)
|++|++++|+++
T Consensus 4 L~~L~l~~n~i~ 15 (24)
T PF13516_consen 4 LETLDLSNNQIT 15 (24)
T ss_dssp -SEEE-TSSBEH
T ss_pred CCEEEccCCcCC
Confidence 333444444433
No 121
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=84.65 E-value=0.79 Score=47.59 Aligned_cols=30 Identities=7% Similarity=-0.068 Sum_probs=23.0
Q ss_pred CcceeecCCCcEEEEEeeecCCCC----cEEEEEE
Q 045233 293 FDYLIQFPKFESFALSFLFRSSTG----TFLIIIF 323 (325)
Q Consensus 293 f~~~ig~g~~g~vy~g~l~~~~~~----~~vav~~ 323 (325)
+...||+|.||.||.|++. ..+| ..||||-
T Consensus 696 l~~~lG~G~FG~VY~g~~~-~~~~~~~~~~vaiK~ 729 (1025)
T KOG1095|consen 696 LLRVLGKGAFGEVYEGTYS-DVPGSVSPIQVAVKS 729 (1025)
T ss_pred eeeeeccccccceEEEEEe-cCCCCccceEEEEEe
Confidence 4488999999999999994 3333 4588874
No 122
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=84.55 E-value=1 Score=42.03 Aligned_cols=28 Identities=18% Similarity=-0.039 Sum_probs=25.8
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..+|+|.||.||+++-. .+|+.+|+|++
T Consensus 41 ~~lG~G~Fg~v~~~~~~--~tg~~~A~K~i 68 (382)
T KOG0032|consen 41 RELGRGQFGVVYLCREK--STGKEVACKVI 68 (382)
T ss_pred hhhCCCCceEEEEEEec--CCCceeEEEEe
Confidence 78999999999999996 67999999986
No 123
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=84.07 E-value=0.81 Score=41.34 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=24.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
..||.|.||..+.|+=- -+++.|||||
T Consensus 34 kKIGeGsFG~lf~G~Nl--~nne~VAIKf 60 (449)
T KOG1165|consen 34 KKIGEGSFGVLFLGKNL--YNNEPVAIKF 60 (449)
T ss_pred cccccCcceeeeccccc--ccCceEEEEe
Confidence 68999999999999843 7899999998
No 124
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=83.54 E-value=0.14 Score=45.38 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=24.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
..+|+|.||+||++.-. +.|++||||-
T Consensus 39 ~KLGEGSYGSV~KAIH~--EsG~v~AIK~ 65 (502)
T KOG0574|consen 39 GKLGEGSYGSVHKAIHR--ESGHVLAIKK 65 (502)
T ss_pred HHhcCCcchHHHHHHHh--ccCcEEEEEe
Confidence 47999999999999987 8999999983
No 125
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.35 E-value=0.23 Score=49.56 Aligned_cols=30 Identities=7% Similarity=0.010 Sum_probs=25.8
Q ss_pred cceeecCCCcEEEEEeee---cCCCCcEEEEEE
Q 045233 294 DYLIQFPKFESFALSFLF---RSSTGTFLIIIF 323 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~---~~~~~~~vav~~ 323 (325)
.+-||+|.||+||+|... +..+.+.||||.
T Consensus 491 ~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~ 523 (774)
T KOG1026|consen 491 KEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKA 523 (774)
T ss_pred hhhhcCchhhhhhhhhccCCCCCccceehhHhh
Confidence 367999999999999997 457789999985
No 126
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.53 E-value=0.76 Score=24.81 Aligned_cols=17 Identities=41% Similarity=0.741 Sum_probs=9.7
Q ss_pred ccceeecccCcCCCcCch
Q 045233 141 NLVHLDLGNNNLTGPIPS 158 (325)
Q Consensus 141 ~L~~L~Ls~N~l~~~~p~ 158 (325)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4556666666665 4443
No 127
>PHA03207 serine/threonine kinase US3; Provisional
Probab=81.47 E-value=1.7 Score=40.53 Aligned_cols=30 Identities=3% Similarity=-0.184 Sum_probs=24.0
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||.|+||.||++......++..||||..
T Consensus 98 ~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~ 127 (392)
T PHA03207 98 SSLTPGSEGEVFVCTKHGDEQRKKVIVKAV 127 (392)
T ss_pred EeecCCCCeEEEEEEEcCCccceeEEEEec
Confidence 679999999999998643345688999864
No 128
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=81.24 E-value=1.7 Score=40.37 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=25.7
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..+|+|+||.|-++.=. .+|+.||||.+
T Consensus 178 ~~LGsGafg~Vkla~e~--~tgk~vAiKIi 205 (475)
T KOG0615|consen 178 KTLGSGAFGLVKLAYEK--KTGKQVAIKII 205 (475)
T ss_pred eeecCCceeEEEEEEEc--ccCcEEEeeee
Confidence 67899999999999987 89999999975
No 129
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=78.06 E-value=0.94 Score=43.08 Aligned_cols=98 Identities=26% Similarity=0.128 Sum_probs=46.6
Q ss_pred CCcCCEEecccCCCCCC--CchhhcCCcccceeecccC-cCCCcCc----hhccCCCCCcEEEcCcC-------------
Q 045233 115 LSKLQLLDLSLNRLSGT--IPSNIGNLRNLVHLDLGNN-NLTGPIP----STLARLTNLKYLDLKVT------------- 174 (325)
Q Consensus 115 l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N-~l~~~~p----~~~~~l~~L~~L~l~~n------------- 174 (325)
++.|+.|.+.++.-... .-.....+++|+.|+++++ ......+ .....+.+|+.|+++.+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56667776666643322 2334456677777777763 1111111 12233455555655544
Q ss_pred CCCCCcEEEccCCc-CCCCC-chhhhCCCCCCEEECCCCc
Q 045233 175 SMKNLTWLDISNNK-IEGSI-PGELTELSRPDCLSLSANK 212 (325)
Q Consensus 175 ~l~~L~~L~Ls~n~-l~~~~-p~~~~~l~~L~~L~L~~N~ 212 (325)
.+++|+.|.+.++. ++... -.....++.|++|+++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 23455555554444 33221 1222334555555555444
No 130
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=76.76 E-value=1.8 Score=42.00 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=26.4
Q ss_pred CCc-ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 292 GFD-YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 292 nf~-~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
.|+ .-|+.++-|.||+|+| ++|+.||||+
T Consensus 127 eF~~~PiAsASIaQVH~A~L---~sG~~VAVKV 156 (517)
T COG0661 127 EFEPEPIASASIAQVHRAVL---KSGEEVAVKV 156 (517)
T ss_pred HcCCCchhhhhHhhheeEEe---cCCCEEEEEe
Confidence 355 8899999999999999 8899999997
No 131
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=76.02 E-value=4.4 Score=37.00 Aligned_cols=38 Identities=13% Similarity=-0.002 Sum_probs=31.9
Q ss_pred cccHHHHHHHhcCCcceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 280 SIVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 280 ~~~~~~l~~~t~nf~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.++..|+.+.- .||.|..|+||+..-. ++++..|+|++
T Consensus 75 ~i~~~dle~~~-----~lG~G~gG~V~kv~Hk--~t~~i~AlK~I 112 (364)
T KOG0581|consen 75 GISLSDLERLG-----VLGSGNGGTVYKVRHK--PTGKIYALKVI 112 (364)
T ss_pred ccCHHHhhhhh-----hcccCCCcEEEEEEEc--CCCeEEEEEee
Confidence 46667776554 7999999999999997 88999999986
No 132
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.54 E-value=2.8 Score=40.33 Aligned_cols=28 Identities=14% Similarity=-0.148 Sum_probs=25.6
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|..|.||.++-. .++++||||.|
T Consensus 279 ~kigqgaSG~vy~A~~~--~~~~~VaiK~m 306 (550)
T KOG0578|consen 279 KKIGQGATGGVYVARKI--STKQEVAIKRM 306 (550)
T ss_pred hhhccccccceeeeeec--cCCceEEEEEE
Confidence 57999999999999987 99999999976
No 133
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=75.41 E-value=3.5 Score=39.64 Aligned_cols=28 Identities=11% Similarity=-0.085 Sum_probs=22.9
Q ss_pred ceeecCCCcEEEEEeeecCCC-CcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSST-GTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~-~~~vav~~~ 324 (325)
..||+|+||.||++.-. .+ ++.||+|++
T Consensus 73 ~~lg~G~~g~vy~a~~~--~~~~~~vv~K~~ 101 (478)
T PTZ00267 73 TLVGRNPTTAAFVATRG--SDPKEKVVAKFV 101 (478)
T ss_pred EEEEeCCCcEEEEEEEc--CCCCeEEEEEEc
Confidence 78999999999999874 44 677888864
No 134
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.29 E-value=2.4 Score=22.89 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=6.1
Q ss_pred ccceeecccCcCC
Q 045233 141 NLVHLDLGNNNLT 153 (325)
Q Consensus 141 ~L~~L~Ls~N~l~ 153 (325)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3444444444443
No 135
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=74.75 E-value=1.1 Score=39.18 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=24.0
Q ss_pred eeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 296 LIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 296 ~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.||.|.||+|+|=.-. +.|++.|||-+
T Consensus 71 ~iG~G~fG~V~KM~hk--~sg~~mAVKrI 97 (361)
T KOG1006|consen 71 EIGNGAFGTVNKMLHK--PSGKLMAVKRI 97 (361)
T ss_pred HhcCCcchhhhhhhcC--ccCcEEEEEEe
Confidence 6999999999998887 88999999954
No 136
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.56 E-value=1.9 Score=41.52 Aligned_cols=37 Identities=32% Similarity=0.321 Sum_probs=20.8
Q ss_pred CCCcCCEEecccCCCCC--CCchhhcCCcccceeecccC
Q 045233 114 ALSKLQLLDLSLNRLSG--TIPSNIGNLRNLVHLDLGNN 150 (325)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N 150 (325)
+.+.+..++|++|++.. .+..--...|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44556666777776652 12222234466777777777
No 137
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=73.05 E-value=1.5 Score=40.85 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=17.8
Q ss_pred CCCCCEEECCCCcCCC-CCCCcccCCCCCcEEEccCCC
Q 045233 200 LSRPDCLSLSANKLSG-PVPFSNKQLSTMYIVRLSPNK 236 (325)
Q Consensus 200 l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~N~ 236 (325)
+..+..+.|++++.+. ..-..+..+++|+.+++.+..
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 4455555555555431 122234455556655555443
No 138
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=72.56 E-value=2.5 Score=38.46 Aligned_cols=18 Identities=22% Similarity=0.028 Sum_probs=16.4
Q ss_pred ceeecCCCcEEEEEeeec
Q 045233 295 YLIQFPKFESFALSFLFR 312 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~ 312 (325)
++||.|.||.||+|++-.
T Consensus 30 ~liG~GsFg~Vyq~~~~e 47 (364)
T KOG0658|consen 30 RLIGSGSFGVVYQAKLRE 47 (364)
T ss_pred EEEeecccceEEEEEEcC
Confidence 699999999999999863
No 139
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=71.84 E-value=4.4 Score=38.47 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=25.3
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.-||+|.||.|-++.=. .+|++||||++
T Consensus 103 ~eiG~G~yGkVkLar~~--~~~~l~AiKil 130 (576)
T KOG0585|consen 103 KEIGSGQYGKVKLARDE--VDGKLYAIKIL 130 (576)
T ss_pred hhhcCCccceEEEEeec--CCCcEEEEEee
Confidence 56899999999999886 89999999975
No 140
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=71.16 E-value=3.3 Score=40.77 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=22.3
Q ss_pred ceeecCCCcEEEEEeeecCCCC--cEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTG--TFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~--~~vav~~ 323 (325)
.+||.|-||.||+|+...-..| ..||||.
T Consensus 395 r~iG~GqFGdVy~gvYt~~~kge~iaVAvKt 425 (974)
T KOG4257|consen 395 RLIGEGQFGDVYKGVYTDPEKGERIAVAVKT 425 (974)
T ss_pred HhhcCCcccceeeeEecccccCcceeeeeeh
Confidence 8899999999999999643344 4566663
No 141
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=70.66 E-value=1.4 Score=42.77 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.2
Q ss_pred CcceeecCCCcEEEEEeeecCCCCcEEE
Q 045233 293 FDYLIQFPKFESFALSFLFRSSTGTFLI 320 (325)
Q Consensus 293 f~~~ig~g~~g~vy~g~l~~~~~~~~va 320 (325)
|+.+||+|.|.+||+|.=. .+|.+||
T Consensus 44 ~~evLGrGafKtVYka~De--~~giEVA 69 (632)
T KOG0584|consen 44 FDEVLGRGAFKTVYKAFDE--EEGIEVA 69 (632)
T ss_pred hhhhcccccceeeeecccc--ccchhhH
Confidence 4578999999999999986 7777776
No 142
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=69.76 E-value=2.7 Score=41.84 Aligned_cols=29 Identities=10% Similarity=-0.064 Sum_probs=23.3
Q ss_pred ceeecCCCcEEEEEeee-cCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLF-RSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~-~~~~~~~vav~~ 323 (325)
..||+|.||.|.+|.+. ++++--.||||-
T Consensus 116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKc 145 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKC 145 (1039)
T ss_pred HHhcCcceeeEeeccccCCCCcEEeEEEEe
Confidence 47899999999999997 345556788884
No 143
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.11 E-value=1.1 Score=37.45 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=12.9
Q ss_pred ccCcCCCCCcccccCCCcCCEEecccCC
Q 045233 100 YYYGFTGSIPSDISALSKLQLLDLSLNR 127 (325)
Q Consensus 100 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 127 (325)
++..+..+--+.+.+++.++.|.+.++.
T Consensus 109 sds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 109 SDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred CCchHHHHHHHHHhccchhhhheecccc
Confidence 4444443333344455555555555543
No 144
>PHA03210 serine/threonine kinase US3; Provisional
Probab=67.52 E-value=2.8 Score=40.61 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=17.4
Q ss_pred hcCCc--ceeecCCCcEEEEEee
Q 045233 290 TEGFD--YLIQFPKFESFALSFL 310 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l 310 (325)
.+.|. ..||+|+||.||++..
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~ 169 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICAL 169 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEE
Confidence 34555 7899999999999876
No 145
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.47 E-value=11 Score=20.54 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=10.8
Q ss_pred CCCcEEEccCCCCCchH
Q 045233 225 STMYIVRLSPNKGLGSN 241 (325)
Q Consensus 225 ~~L~~L~l~~N~~~~~~ 241 (325)
++|+.|+|++|.+....
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 45677777777765433
No 146
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=66.19 E-value=1.7 Score=39.08 Aligned_cols=16 Identities=6% Similarity=-0.176 Sum_probs=14.3
Q ss_pred ceeecCCCcEEEEEee
Q 045233 295 YLIQFPKFESFALSFL 310 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l 310 (325)
-.||+|+||.||+++=
T Consensus 30 g~Ig~GTYG~VykA~~ 45 (438)
T KOG0666|consen 30 GKIGRGTYGKVYKAVR 45 (438)
T ss_pred ceecccccceeeEeee
Confidence 4899999999999965
No 147
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=66.00 E-value=6 Score=38.70 Aligned_cols=18 Identities=17% Similarity=-0.038 Sum_probs=16.1
Q ss_pred cceeecCCCcEEEEEeee
Q 045233 294 DYLIQFPKFESFALSFLF 311 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~ 311 (325)
...||+|+||.||+|...
T Consensus 338 ~~~iG~G~~g~Vy~~~~~ 355 (535)
T PRK09605 338 DHLIGKGAEADIKKGEYL 355 (535)
T ss_pred cceeccCCcEEEEEEeec
Confidence 488999999999999983
No 148
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=64.25 E-value=3.4 Score=38.46 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=24.1
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.-+|+|+||+|-++.=. ..|++||||-+
T Consensus 59 etLGkGTYGKVk~A~e~--~sgR~VAiKsI 86 (668)
T KOG0611|consen 59 ETLGKGTYGKVKLAYEH--KSGREVAIKSI 86 (668)
T ss_pred HHhcCCcccceeehhhc--cCCcEeehhhh
Confidence 46899999999999876 77999999854
No 149
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=63.72 E-value=2.5 Score=39.20 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=23.4
Q ss_pred ceeecCCCcEEEEEeeec-CCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFR-SSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~-~~~~~~vav~~ 323 (325)
+.||.|.|++||++++-. ......||+|-
T Consensus 42 ~kigeGsFssv~~a~~~~~~~~~~~valk~ 71 (418)
T KOG1167|consen 42 NKIGEGSFSSVYKATDIEQDTKRRYVALKA 71 (418)
T ss_pred ccccccchhhhhhhhHhhhccccceEeeee
Confidence 889999999999999951 12567888874
No 150
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=63.65 E-value=7.3 Score=37.94 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=25.8
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|-|++|..++-. -+|++||||+|
T Consensus 62 ~tig~g~f~~V~La~~~--~t~~~VaiK~i 89 (596)
T KOG0586|consen 62 KTIGKGNFAKVKLARHI--LTGTEVAIKII 89 (596)
T ss_pred eeeccceeEEEEeeEec--CCCceEEEEEe
Confidence 67999999999999987 77999999987
No 151
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.33 E-value=3.1 Score=36.63 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=23.8
Q ss_pred cceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 294 DYLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
++-||.|+||.|+--+=+ .||..||.|-
T Consensus 58 DRPIGYGAFGVVWsVTDP--RdgrrvalkK 85 (449)
T KOG0664|consen 58 DRPIGYGAFGVVWSVTDP--RSGKRVALKK 85 (449)
T ss_pred CCcccccceeEEEeccCC--CCccchhHhh
Confidence 378999999999988877 8888888763
No 152
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.24 E-value=4.7 Score=38.92 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=8.2
Q ss_pred CCCEEECCCCcCCC
Q 045233 202 RPDCLSLSANKLSG 215 (325)
Q Consensus 202 ~L~~L~L~~N~l~~ 215 (325)
.|++|-+.+|+++.
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 35566666666653
No 153
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=63.08 E-value=5.7 Score=37.79 Aligned_cols=28 Identities=11% Similarity=-0.136 Sum_probs=22.4
Q ss_pred cceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 294 DYLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+.||+|-||.|+.|.+. .-+-||||..
T Consensus 211 ~~~LG~G~FG~V~~g~~~---~~~~vavk~i 238 (468)
T KOG0197|consen 211 IRELGSGQFGEVWLGKWN---GSTKVAVKTI 238 (468)
T ss_pred HHHhcCCccceEEEEEEc---CCCcccceEE
Confidence 368999999999999993 3347888763
No 154
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=62.62 E-value=4.7 Score=39.27 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=27.1
Q ss_pred ccHHHHHHHhcCCcceeecCCCcEEEEEeeecCCCCcEEEEE
Q 045233 281 IVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIII 322 (325)
Q Consensus 281 ~~~~~l~~~t~nf~~~ig~g~~g~vy~g~l~~~~~~~~vav~ 322 (325)
+.|++|.+. .-+|.|+=|.||.|+|. ++.||||
T Consensus 121 iPFe~IsEL-----eWlGSGaQGAVF~Grl~----netVAVK 153 (904)
T KOG4721|consen 121 IPFEEISEL-----EWLGSGAQGAVFLGRLH----NETVAVK 153 (904)
T ss_pred CCHHHhhhh-----hhhccCcccceeeeecc----CceehhH
Confidence 667777654 36899999999999994 8888887
No 155
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.73 E-value=4.9 Score=36.37 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=26.3
Q ss_pred hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
.++|+ .++|+|.||+|-..+=. .+|..-|||.
T Consensus 167 m~dFdfLKvLGkGTFGKVIL~rEK--at~k~YAiKI 200 (516)
T KOG0690|consen 167 MEDFDFLKVLGKGTFGKVILCREK--ATGKLYAIKI 200 (516)
T ss_pred cchhhHHHHhcCCccceEEEEeec--ccCceeehhh
Confidence 45677 78999999999988876 7888888874
No 156
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=61.21 E-value=4.8 Score=38.79 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=25.6
Q ss_pred cceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 294 DYLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
...||.|.|.+||+++=. .++.+.|||+
T Consensus 78 g~~lGeGSYStV~~A~~~--~t~keYAiKV 105 (604)
T KOG0592|consen 78 GKILGEGSYSTVVLAREK--ATGKEYAIKV 105 (604)
T ss_pred hheeccccceeEEEeeec--CCCceeeHhh
Confidence 379999999999999987 8999999997
No 157
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=61.10 E-value=8.3 Score=37.61 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=33.8
Q ss_pred ccccHHHHHHHhcC------------Cc-ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 279 RSIVYEDLIEATEG------------FD-YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 279 ~~~~~~~l~~~t~n------------f~-~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
.+++++|+.+.-+. |+ .-|+.-..|.||+++| ++|+.||||+
T Consensus 138 Pp~~~ee~~~i~e~ElG~~ie~if~~f~~~piaaASlaQVhrA~L---~~G~~VaVKV 192 (538)
T KOG1235|consen 138 PPFPWEEAFKIFEEELGAPIEDIFSEFDEEPIAAASLAQVHRARL---KNGEDVAVKV 192 (538)
T ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHhcCcchhhhcchhheEEEEe---cCCCEEEEEe
Confidence 46777777655332 44 7799999999999999 8899999997
No 158
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.48 E-value=11 Score=35.48 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=25.6
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||.|..+.||++.-. +.++.||||.+
T Consensus 32 e~IG~G~sa~V~~A~c~--p~~e~VAIK~i 59 (516)
T KOG0582|consen 32 EVIGVGASAVVYLARCI--PTNEVVAIKII 59 (516)
T ss_pred EEEeccceeEeeeeeec--ccCCEEEEEEe
Confidence 68999999999999987 88899999965
No 159
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=59.42 E-value=11 Score=33.56 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=26.9
Q ss_pred cCCcceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 291 EGFDYLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 291 ~nf~~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
+.+.+.||-|.-+.||.|.- ++|..+||||
T Consensus 93 e~iG~~IGvGKEsdVY~~~~---~~g~~~~vKf 122 (304)
T COG0478 93 EAIGTKIGVGKESDVYVAID---PKGRKVAVKF 122 (304)
T ss_pred HhhccccccCccceEEEEEC---CCCCEEEEEE
Confidence 33458999999999999999 8999999998
No 160
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=59.41 E-value=2.8 Score=39.51 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=19.4
Q ss_pred HHHhcC-Cc--ceeecCCCcEEEEEeee
Q 045233 287 IEATEG-FD--YLIQFPKFESFALSFLF 311 (325)
Q Consensus 287 ~~~t~n-f~--~~ig~g~~g~vy~g~l~ 311 (325)
+-.|.| |. ++||+||||.||-....
T Consensus 180 qpvt~n~F~~~RvlGkGGFGEV~acqvr 207 (591)
T KOG0986|consen 180 QPVTKNTFRVYRVLGKGGFGEVCACQVR 207 (591)
T ss_pred hhccccceeeeEEEecccccceeEEEEe
Confidence 444444 65 88999999999998875
No 161
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.24 E-value=8.5 Score=38.60 Aligned_cols=28 Identities=7% Similarity=-0.071 Sum_probs=22.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
-++|+|+||+||-|+=- .+--.+|||.+
T Consensus 581 vVLGKGTYG~VYA~RD~--~tqvrIaIKEI 608 (1226)
T KOG4279|consen 581 VVLGKGTYGTVYAARDM--DTQVRIAIKEI 608 (1226)
T ss_pred EEeecCceeEEEeeccc--cceeEEEeeec
Confidence 57899999999999874 55566788864
No 162
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=58.28 E-value=6.2 Score=33.50 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=24.1
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
.-||+|++|.|-+=++. .+|+..|||=
T Consensus 52 ~elGrGayG~vekmrh~--~sg~imAvKr 78 (282)
T KOG0984|consen 52 EELGRGAYGVVEKMRHI--QSGTIMAVKR 78 (282)
T ss_pred hhhcCCccchhhheeec--cCCeEEEEee
Confidence 46899999999998887 9999999984
No 163
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=57.68 E-value=13 Score=32.18 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=28.1
Q ss_pred ccHHHHHH--HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 281 IVYEDLIE--ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 281 ~~~~~l~~--~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..|.++.+ ..+++. +++|.||||.||...- ++..+|||++
T Consensus 19 ~~~~~~~~~~l~~~y~~~~~l~~~~f~~v~l~~~----~~~~~iiKvf 62 (232)
T PRK10359 19 NKYKEIFDDFLSYNIKTIKVFRNIDDTKVSLIDT----DYGKYILKVF 62 (232)
T ss_pred ccHHHHHHHHhhCceEEEEEecCCCceEEEEEec----CCCcEEEEEe
Confidence 44556632 234454 8899999999998533 4678999986
No 164
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=57.57 E-value=6.8 Score=44.97 Aligned_cols=37 Identities=22% Similarity=0.023 Sum_probs=25.5
Q ss_pred ECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHHH
Q 045233 207 SLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFI 243 (325)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~~ 243 (325)
||++|+|+...+..|..+++|+.|+|++|++.|..-+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 4667777755556667777777777777777776543
No 165
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=56.64 E-value=4.8 Score=19.47 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHh
Q 045233 2 IFRLVALAWVVIFAT 16 (325)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (325)
||+++..+.++++++
T Consensus 1 MMk~vIIlvvLLliS 15 (19)
T PF13956_consen 1 MMKLVIILVVLLLIS 15 (19)
T ss_pred CceehHHHHHHHhcc
Confidence 666555555544443
No 166
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=54.88 E-value=4 Score=42.79 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=26.1
Q ss_pred hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
-++|. .+||+|+||.|.+=++. .++++-|+|.
T Consensus 74 ~~DfeilKvIGrGaFGEV~lVr~k--~t~~VYAMK~ 107 (1317)
T KOG0612|consen 74 AEDFEILKVIGRGAFGEVALVRHK--STEKVYAMKI 107 (1317)
T ss_pred HHhhHHHHHhcccccceeEEEEee--ccccchhHHH
Confidence 45565 78999999999999997 7788888764
No 167
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.18 E-value=6 Score=37.02 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHhc-CCcceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 284 EDLIEATE-GFDYLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 284 ~~l~~~t~-nf~~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
.+.+++|+ ||-.+||+|+||+|-.+.-. .+.++-|||+
T Consensus 343 ~d~i~~tDFnFl~VlGKGSFGKVlLaerk--gtdELyAiKi 381 (683)
T KOG0696|consen 343 RDRIKATDFNFLMVLGKGSFGKVLLAERK--GTDELYAIKI 381 (683)
T ss_pred ccceeecccceEEEeccCccceeeeeccc--Ccchhhhhhh
Confidence 34445553 45588999999999998765 6667788875
No 168
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=54.02 E-value=13 Score=37.52 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=22.7
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
+.|-+|||+.||.+... ..|..+|+|-
T Consensus 43 ~vLAEGGFa~VYla~~~--~~~~~~AlKr 69 (738)
T KOG1989|consen 43 KVLAEGGFAQVYLAQDV--KGGKKYALKR 69 (738)
T ss_pred EEEccCCcEEEEEEEec--CCCceeeeee
Confidence 68999999999999995 4448888873
No 169
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=53.18 E-value=6 Score=36.97 Aligned_cols=100 Identities=23% Similarity=0.206 Sum_probs=57.3
Q ss_pred CCCCCCCEEEeccccCcC-CCCCcccc-cCCCcCCEEecccCCCC--CCCchhhcCCcccceeecccCcCCCcC-----c
Q 045233 87 SCFPNLESLRIQAYYYGF-TGSIPSDI-SALSKLQLLDLSLNRLS--GTIPSNIGNLRNLVHLDLGNNNLTGPI-----P 157 (325)
Q Consensus 87 ~~l~~L~~L~l~~~~n~~-~~~~p~~l-~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~-----p 157 (325)
.+.++|+.|.+ +.++. +..--..+ .+.+.|+.+++..+... +.+...-.+++.|+.|.|+++...-.. .
T Consensus 317 ~~~~~L~~l~l--~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 317 QHCHNLQVLEL--SGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred cCCCceEEEec--cccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 34688888888 66542 21111112 35678888888887654 222233346788899988877654111 1
Q ss_pred hhccCCCCCcEEEcCcC------------CCCCCcEEEccCCc
Q 045233 158 STLARLTNLKYLDLKVT------------SMKNLTWLDISNNK 188 (325)
Q Consensus 158 ~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~ 188 (325)
..-..+..|+.+.++++ .+++|+.+++-+++
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 12234456666666655 34566666666554
No 170
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=51.67 E-value=16 Score=36.49 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=24.5
Q ss_pred cceeecCCCcEEEEEeeecC-C----CCcEEEEEEe
Q 045233 294 DYLIQFPKFESFALSFLFRS-S----TGTFLIIIFY 324 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~~-~----~~~~vav~~~ 324 (325)
...+|.|.||.|++|++... . ....||||+-
T Consensus 301 ~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~ 336 (609)
T KOG0200|consen 301 GKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKML 336 (609)
T ss_pred cceeecccccceEeEEEeecccccccceEEEEEEec
Confidence 35999999999999998732 1 2578999973
No 171
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=49.98 E-value=9.8 Score=34.75 Aligned_cols=16 Identities=13% Similarity=-0.120 Sum_probs=13.8
Q ss_pred ceeecCCCcEEEEEee
Q 045233 295 YLIQFPKFESFALSFL 310 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l 310 (325)
.+||+|+||+||+-+-
T Consensus 31 kviGkG~fGkV~~Vrk 46 (357)
T KOG0598|consen 31 KVIGKGSFGKVFQVRK 46 (357)
T ss_pred eeeeccCCceEEEEEE
Confidence 6999999999998653
No 172
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=45.84 E-value=21 Score=34.99 Aligned_cols=28 Identities=7% Similarity=0.002 Sum_probs=25.1
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..+|.|+||.|..++-. ++--+|.|||+
T Consensus 567 q~lG~GAyGkV~lai~K--~n~~eVViK~I 594 (772)
T KOG1152|consen 567 QPLGEGAYGKVNLAIHK--ENNYEVVIKMI 594 (772)
T ss_pred eeccccccceEEEeeec--ccceEEEeeeh
Confidence 67899999999999997 77889999986
No 173
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=41.84 E-value=23 Score=34.82 Aligned_cols=27 Identities=11% Similarity=-0.018 Sum_probs=24.0
Q ss_pred cceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 294 DYLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
...||+|-||.|-...+ ..+..||||.
T Consensus 543 ~ekiGeGqFGEVhLCev---eg~lkVAVK~ 569 (807)
T KOG1094|consen 543 KEKIGEGQFGEVHLCEV---EGPLKVAVKI 569 (807)
T ss_pred hhhhcCcccceeEEEEe---cCceEEEEee
Confidence 37899999999999999 4579999996
No 174
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=39.67 E-value=15 Score=33.33 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=32.7
Q ss_pred ccHHHHHHHhcCCcceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 281 IVYEDLIEATEGFDYLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 281 ~~~~~l~~~t~nf~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
-+|+|+-+.|+ ..+|+|++++|--.+=- .+|.+-|||++
T Consensus 73 g~F~d~YkLt~---e~LGeGAyasVqtcv~i--~t~~EYAVKii 111 (463)
T KOG0607|consen 73 GKFEDMYKLTS---ELLGEGAYASVQTCVSI--QTGKEYAVKII 111 (463)
T ss_pred chHHHHHHhHH---HHhcCccceeeeeeeee--ccchhhhhhhh
Confidence 35789988886 59999999999887654 89999999874
No 175
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=38.97 E-value=5.6 Score=37.52 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=22.7
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
+++|+|||..||++.=- ..-+-||||.
T Consensus 469 hLLGrGGFSEVyKAFDl--~EqRYvAvKI 495 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDL--TEQRYVAVKI 495 (775)
T ss_pred HHhccccHHHHHHhccc--chhheeeEee
Confidence 67899999999999863 6678889885
No 176
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.84 E-value=23 Score=41.06 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=18.6
Q ss_pred ecccCcCCCcCchhccCCCCCcEEEcCcC
Q 045233 146 DLGNNNLTGPIPSTLARLTNLKYLDLKVT 174 (325)
Q Consensus 146 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n 174 (325)
||++|+|+...+..|..+++|+.|+|++|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgN 29 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGN 29 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCC
Confidence 68889998554556766666655544443
No 177
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=36.45 E-value=38 Score=30.94 Aligned_cols=17 Identities=6% Similarity=-0.234 Sum_probs=15.3
Q ss_pred ceeecCCCcEEEEEeee
Q 045233 295 YLIQFPKFESFALSFLF 311 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~ 311 (325)
..||+|+||.||++.-.
T Consensus 30 ~~lg~G~~g~V~~~~~~ 46 (364)
T cd07875 30 KPIGSGAQGIVCAAYDA 46 (364)
T ss_pred EEeecCCCeEEEEEEEC
Confidence 58999999999999875
No 178
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=36.00 E-value=15 Score=37.40 Aligned_cols=25 Identities=4% Similarity=-0.095 Sum_probs=20.4
Q ss_pred ceeecCC-CcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPK-FESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~-~g~vy~g~l~~~~~~~~vav~~ 323 (325)
.++|.|. .+.||+|+.+ |++||||=
T Consensus 515 eilG~Gs~Gt~Vf~G~ye----~R~VAVKr 540 (903)
T KOG1027|consen 515 EILGYGSNGTVVFRGVYE----GREVAVKR 540 (903)
T ss_pred HHcccCCCCcEEEEEeeC----CceehHHH
Confidence 5678888 4568999995 99999983
No 179
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=34.27 E-value=54 Score=28.25 Aligned_cols=26 Identities=8% Similarity=-0.035 Sum_probs=22.0
Q ss_pred ceee-cCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQ-FPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig-~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..|| .||.|+||+-... |..++||-|
T Consensus 37 ~~lg~~~g~gtv~~v~~~----~~~~vlk~~ 63 (239)
T PRK01723 37 RVVGSAKGRGTTWFVQTP----GVNWVLRHY 63 (239)
T ss_pred ceeecCCCCccEEEEEeC----CceEEEEEe
Confidence 7898 9999999999983 777888876
No 180
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=34.22 E-value=28 Score=18.30 Aligned_cols=11 Identities=45% Similarity=0.383 Sum_probs=5.3
Q ss_pred CcCCEEecccC
Q 045233 116 SKLQLLDLSLN 126 (325)
Q Consensus 116 ~~L~~L~Ls~n 126 (325)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34455555544
No 181
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.33 E-value=6.9 Score=38.74 Aligned_cols=16 Identities=6% Similarity=-0.216 Sum_probs=13.5
Q ss_pred eeecCCCcEEEEEeee
Q 045233 296 LIQFPKFESFALSFLF 311 (325)
Q Consensus 296 ~ig~g~~g~vy~g~l~ 311 (325)
-+|.|+||+||+++=.
T Consensus 39 ELGDGAFGKVyKA~nk 54 (1187)
T KOG0579|consen 39 ELGDGAFGKVYKAVNK 54 (1187)
T ss_pred hhcCccchhhhhhhcc
Confidence 3689999999999863
No 182
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=33.12 E-value=47 Score=31.15 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=27.0
Q ss_pred CCcceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 292 GFDYLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 292 nf~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
+.+=||.-|.-.-||.++= .||..+|||.|
T Consensus 147 ~inGCiSTGKEANVYHat~---~dG~~~AIKIY 176 (520)
T KOG2270|consen 147 EINGCISTGKEANVYHATE---EDGSEFAIKIY 176 (520)
T ss_pred ecccccccCccceeEeeec---CCCceEEEEEE
Confidence 3457899999999999988 89999999998
No 183
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=32.93 E-value=52 Score=28.89 Aligned_cols=42 Identities=17% Similarity=0.062 Sum_probs=30.9
Q ss_pred cccHHHHHHHhcCCc-----ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 280 SIVYEDLIEATEGFD-----YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 280 ~~~~~~l~~~t~nf~-----~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..|++.+....+.-. -+|+.|.-..||+|.= .++..||||.|
T Consensus 34 ~~t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~---~~~~~~avKiy 80 (268)
T COG1718 34 KRTLETLRRLLSRGVITELVGCISTGKEANVYLAET---GDGRYVAVKIY 80 (268)
T ss_pred hHHHHHHHHHhcCCceeeeEeeecCCcceEEEeecc---CCCceEEEEEE
Confidence 355666655554432 4677777788999988 78999999998
No 184
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=32.71 E-value=19 Score=38.70 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=25.1
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+||.|.||.||-+.=. .+|...|||.+
T Consensus 1241 ~~Ig~G~fG~VYtavN~--~tGellAvKEI 1268 (1509)
T KOG4645|consen 1241 NFIGGGTFGKVYTAVNL--DTGELLAVKEI 1268 (1509)
T ss_pred cccCCcceeeeEEeecC--Cccchhhhhhh
Confidence 88999999999998865 89999999875
No 185
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.94 E-value=18 Score=33.01 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=26.7
Q ss_pred cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
++|+ ++||+|+|.+|-...+. .+.+..|+|+
T Consensus 250 ~df~ll~vigrgsyakvl~~~~~--~t~qiyamkv 282 (593)
T KOG0695|consen 250 QDFDLLRVIGRGSYAKVLLVRLK--KTDQIYAMKV 282 (593)
T ss_pred ccceeeeeecCcchhhhhheehc--ccceeeehhh
Confidence 4566 88999999999999997 7888888876
No 186
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=29.54 E-value=60 Score=30.52 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=24.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..+|.|--|+||...+. .++..-|+|+.
T Consensus 83 k~LG~GdiG~VyL~~l~--~t~~~fAmKVm 110 (459)
T KOG0610|consen 83 KRLGCGDIGTVYLVELR--GTNCLFAMKVM 110 (459)
T ss_pred HHcCCCCceeEEEEEec--CCCceEEEEEe
Confidence 57999999999999996 55689999985
No 187
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=29.16 E-value=48 Score=29.86 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=23.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
.-+|.|+||.|-.-+.. ++|..-|+|+
T Consensus 50 ~tlGtGSFGrV~LVr~k--~~g~yYAmKv 76 (355)
T KOG0616|consen 50 KTLGTGSFGRVHLVREK--HSGNYYAMKV 76 (355)
T ss_pred eeeccCccceEEEEEEc--cCCceeehhh
Confidence 56999999999998887 7788888886
No 188
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=28.71 E-value=58 Score=29.05 Aligned_cols=26 Identities=12% Similarity=-0.086 Sum_probs=23.4
Q ss_pred eeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 296 LIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 296 ~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
.+|.|+-|.|.+.+.- ++|...|||-
T Consensus 99 dlGsGtcG~V~k~~~r--s~~~iiAVK~ 124 (391)
T KOG0983|consen 99 DLGSGTCGQVWKMRFR--STGHIIAVKQ 124 (391)
T ss_pred hhcCCCccceEEEEEc--ccceEEEEEe
Confidence 5899999999999996 7789999984
No 189
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=28.18 E-value=46 Score=32.39 Aligned_cols=26 Identities=12% Similarity=-0.041 Sum_probs=22.7
Q ss_pred eecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 297 IQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 297 ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.|+|-|+.|..+.=. ..|+.||||.+
T Consensus 440 ~GkGvFs~Vvra~D~--~r~~~vAiKII 465 (752)
T KOG0670|consen 440 TGKGVFSTVVRARDQ--ARGQEVAIKII 465 (752)
T ss_pred cccceeeeeeecccc--CCCCeeEEEEe
Confidence 488999999999875 78899999976
No 190
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=25.98 E-value=41 Score=33.55 Aligned_cols=27 Identities=0% Similarity=-0.204 Sum_probs=22.8
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
..+|-|-||.||.|.+. .-.--||||-
T Consensus 273 hKLGGGQYGeVYeGvWK--kyslTvAVKt 299 (1157)
T KOG4278|consen 273 HKLGGGQYGEVYEGVWK--KYSLTVAVKT 299 (1157)
T ss_pred eccCCCcccceeeeeee--ccceeeehhh
Confidence 68899999999999997 6667788873
No 191
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=25.93 E-value=73 Score=28.34 Aligned_cols=17 Identities=12% Similarity=-0.037 Sum_probs=15.4
Q ss_pred ceeecCCCcEEEEEeee
Q 045233 295 YLIQFPKFESFALSFLF 311 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~ 311 (325)
..||+|+||.||+++..
T Consensus 31 ~~lg~G~~~~v~~~~~~ 47 (317)
T cd06635 31 REIGHGSFGAVYFARDV 47 (317)
T ss_pred heeccCCCeEEEEEEEc
Confidence 57999999999999975
No 192
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=25.00 E-value=1e+02 Score=16.46 Aligned_cols=15 Identities=0% Similarity=0.045 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhh
Q 045233 3 FRLVALAWVVIFATA 17 (325)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (325)
++.++.+.+++.++.
T Consensus 8 Kkil~~l~a~~~Lag 22 (25)
T PF08139_consen 8 KKILFPLLALFMLAG 22 (25)
T ss_pred HHHHHHHHHHHHHhh
Confidence 354454444444443
No 193
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=23.80 E-value=31 Score=31.93 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=22.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEE
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~ 323 (325)
..+|+|.||.|-+..-. ..+..||||+
T Consensus 95 ~~lGeGtFGkV~ec~D~--~~~~~vAlKI 121 (415)
T KOG0671|consen 95 DLLGEGTFGKVVECWDR--ETKEHVALKI 121 (415)
T ss_pred hhhcCCcccceEEEeec--CCCceehHHH
Confidence 56899999999988774 4589999985
No 194
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=21.19 E-value=1.3e+02 Score=25.50 Aligned_cols=37 Identities=3% Similarity=0.001 Sum_probs=29.4
Q ss_pred CccccHHHHHHHhcCCc--ceeecCCC-cEEEEEeeecCCCCcEEEEEE
Q 045233 278 DRSIVYEDLIEATEGFD--YLIQFPKF-ESFALSFLFRSSTGTFLIIIF 323 (325)
Q Consensus 278 ~~~~~~~~l~~~t~nf~--~~ig~g~~-g~vy~g~l~~~~~~~~vav~~ 323 (325)
.++|++ -+.+|. ..+|.|.- |.||+-.+ +|..-|+|+
T Consensus 29 L~~F~~-----h~~~I~flefLg~g~~~~~V~kv~I----~g~~YALKl 68 (207)
T PF13095_consen 29 LEPFTH-----HGDDIEFLEFLGHGSHDGYVFKVEI----DGRIYALKL 68 (207)
T ss_pred cCCcCC-----CCCcEeeeeecCCCCceeEEEEEEE----CCeEEEEEE
Confidence 356666 225555 78999999 99999999 589999998
No 195
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=20.66 E-value=48 Score=33.99 Aligned_cols=16 Identities=6% Similarity=-0.224 Sum_probs=15.0
Q ss_pred ceeecCCCcEEEEEee
Q 045233 295 YLIQFPKFESFALSFL 310 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l 310 (325)
+.+|+|+||.||.|.-
T Consensus 1000 relg~gsfg~Vy~g~~ 1015 (1025)
T KOG4258|consen 1000 RELGQGSFGMVYEGNA 1015 (1025)
T ss_pred hhhccCccceEEEecC
Confidence 8899999999999986
Done!