Query 045233
Match_columns 325
No_of_seqs 449 out of 3306
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 19:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 5.4E-29 1.8E-33 224.4 16.5 215 21-240 2-259 (313)
2 3rgz_A Protein brassinosteroid 99.9 4.9E-28 1.7E-32 243.0 12.3 216 17-239 4-261 (768)
3 4eco_A Uncharacterized protein 99.9 3.1E-26 1.1E-30 225.3 12.8 206 21-238 26-366 (636)
4 2o6q_A Variable lymphocyte rec 99.9 5.3E-25 1.8E-29 194.0 18.5 172 68-241 39-221 (270)
5 4fcg_A Uncharacterized protein 99.9 3.1E-25 1.1E-29 201.1 11.7 207 22-239 24-267 (328)
6 3m19_A Variable lymphocyte rec 99.9 1.2E-23 4.1E-28 183.3 17.7 181 48-240 3-194 (251)
7 4ecn_A Leucine-rich repeat pro 99.9 2.1E-24 7.1E-29 217.6 14.5 209 20-238 264-608 (876)
8 2z80_A TOLL-like receptor 2, v 99.9 2.8E-23 9.6E-28 189.8 15.9 194 45-242 25-318 (353)
9 3zyi_A Leucine-rich repeat-con 99.9 2.2E-23 7.5E-28 196.8 15.7 194 47-242 49-307 (452)
10 3zyj_A Leucine-rich repeat-con 99.9 6.8E-23 2.3E-27 192.8 16.4 193 48-242 39-296 (440)
11 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-22 5.8E-27 179.1 16.8 171 68-240 34-240 (285)
12 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-22 7.9E-27 178.3 15.3 146 69-216 83-240 (285)
13 2z66_A Variable lymphocyte rec 99.9 3.9E-22 1.3E-26 178.5 15.0 193 46-240 3-263 (306)
14 3rgz_A Protein brassinosteroid 99.9 3.9E-22 1.3E-26 200.1 15.9 166 74-241 450-696 (768)
15 3rfs_A Internalin B, repeat mo 99.9 2.8E-21 9.5E-26 170.4 17.9 165 72-242 47-222 (272)
16 4fcg_A Uncharacterized protein 99.9 3.9E-22 1.3E-26 180.6 12.5 171 67-242 105-294 (328)
17 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-22 6.4E-27 181.5 10.1 187 51-240 26-236 (313)
18 2z62_A TOLL-like receptor 4, v 99.9 1.8E-21 6.3E-26 171.6 14.5 172 68-242 30-241 (276)
19 3e6j_A Variable lymphocyte rec 99.9 9.2E-21 3.1E-25 162.9 17.7 163 44-241 13-175 (229)
20 1p9a_G Platelet glycoprotein I 99.9 5E-21 1.7E-25 170.4 15.8 170 67-242 32-212 (290)
21 2id5_A Lingo-1, leucine rich r 99.9 4.1E-21 1.4E-25 182.3 15.5 190 46-237 5-212 (477)
22 1xku_A Decorin; proteoglycan, 99.9 1.1E-20 3.9E-25 170.9 16.7 189 47-238 28-253 (330)
23 2ft3_A Biglycan; proteoglycan, 99.9 7.1E-21 2.4E-25 172.4 15.1 187 47-238 30-254 (332)
24 2z66_A Variable lymphocyte rec 99.9 3.7E-21 1.3E-25 172.1 13.1 147 68-216 103-263 (306)
25 2v9t_B SLIT homolog 2 protein 99.8 2.1E-20 7.2E-25 159.6 15.2 164 45-242 6-169 (220)
26 2o6q_A Variable lymphocyte rec 99.8 7.6E-20 2.6E-24 160.9 18.7 184 47-240 2-196 (270)
27 2o6s_A Variable lymphocyte rec 99.8 8.8E-20 3E-24 154.1 17.9 162 46-241 3-164 (208)
28 3v47_A TOLL-like receptor 5B a 99.8 2.9E-20 1E-24 175.1 15.8 126 117-242 276-412 (455)
29 3zyj_A Leucine-rich repeat-con 99.8 2.7E-20 9.3E-25 175.1 15.4 99 114-214 183-292 (440)
30 3v47_A TOLL-like receptor 5B a 99.8 1.7E-20 5.7E-25 176.8 13.9 87 86-174 75-164 (455)
31 3oja_B Anopheles plasmodium-re 99.8 6.8E-20 2.3E-24 178.8 18.7 169 68-239 77-315 (597)
32 2xwt_C Thyrotropin receptor; s 99.8 1.3E-20 4.3E-25 162.8 11.3 189 46-239 6-219 (239)
33 3m19_A Variable lymphocyte rec 99.8 8.1E-20 2.8E-24 159.0 16.5 167 48-216 10-194 (251)
34 2z81_A CD282 antigen, TOLL-lik 99.8 4.4E-21 1.5E-25 185.0 8.3 163 49-214 3-185 (549)
35 3zyi_A Leucine-rich repeat-con 99.8 5.4E-20 1.8E-24 173.6 15.6 80 136-215 214-304 (452)
36 2v70_A SLIT-2, SLIT homolog 2 99.8 8.6E-20 3E-24 155.8 14.8 140 89-243 31-171 (220)
37 3o6n_A APL1; leucine-rich repe 99.8 1.3E-19 4.6E-24 167.5 16.7 104 69-174 72-175 (390)
38 1wwl_A Monocyte differentiatio 99.8 3.9E-20 1.3E-24 166.2 12.1 168 68-238 65-266 (312)
39 1p9a_G Platelet glycoprotein I 99.8 1.7E-19 5.9E-24 160.4 15.8 157 75-239 19-186 (290)
40 3vq2_A TLR4, TOLL-like recepto 99.8 5.7E-20 2E-24 179.4 13.3 170 69-242 379-562 (606)
41 3rfs_A Internalin B, repeat mo 99.8 6.3E-20 2.2E-24 161.6 12.3 161 68-239 65-236 (272)
42 2z7x_B TOLL-like receptor 1, v 99.8 4.2E-19 1.4E-23 170.1 18.4 154 87-243 321-486 (520)
43 3t6q_A CD180 antigen; protein- 99.8 1.2E-19 4E-24 177.2 14.7 165 52-218 14-196 (606)
44 3t6q_A CD180 antigen; protein- 99.8 1.3E-19 4.4E-24 176.8 14.4 171 69-242 379-564 (606)
45 2xot_A Amphoterin-induced prot 99.8 2.2E-19 7.4E-24 164.7 14.6 151 91-243 40-207 (361)
46 3oja_A Leucine-rich immune mol 99.8 1.1E-19 3.7E-24 173.2 12.8 126 115-242 119-254 (487)
47 3vq2_A TLR4, TOLL-like recepto 99.8 1.2E-19 4.2E-24 177.0 13.3 171 67-240 33-219 (606)
48 2id5_A Lingo-1, leucine rich r 99.8 2.3E-19 7.8E-24 170.3 14.5 83 160-242 244-337 (477)
49 1wwl_A Monocyte differentiatio 99.8 9.7E-20 3.3E-24 163.6 11.3 167 68-240 97-289 (312)
50 1ziw_A TOLL-like receptor 3; i 99.8 6.6E-19 2.3E-23 174.2 16.2 189 49-239 3-209 (680)
51 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-19 4.8E-24 162.9 10.0 167 70-242 62-254 (317)
52 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.9E-18 6.3E-23 167.4 18.0 172 68-244 333-516 (562)
53 3o6n_A APL1; leucine-rich repe 99.8 1.3E-18 4.6E-23 160.8 16.2 170 68-240 95-310 (390)
54 2z63_A TOLL-like receptor 4, v 99.8 2.2E-19 7.6E-24 173.7 11.3 171 70-243 351-536 (570)
55 3j0a_A TOLL-like receptor 5; m 99.8 4.7E-19 1.6E-23 179.5 14.1 183 50-240 14-219 (844)
56 4glp_A Monocyte differentiatio 99.8 2.7E-19 9.4E-24 160.5 10.7 146 90-238 91-264 (310)
57 4g8a_A TOLL-like receptor 4; l 99.8 3.4E-19 1.2E-23 174.1 11.9 169 67-238 53-237 (635)
58 1ziw_A TOLL-like receptor 3; i 99.8 7.6E-19 2.6E-23 173.7 14.4 173 68-242 407-601 (680)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 8.8E-19 3E-23 169.7 14.2 103 67-174 53-156 (562)
60 3oja_B Anopheles plasmodium-re 99.8 1.4E-18 4.8E-23 169.6 15.6 167 70-240 103-339 (597)
61 2z81_A CD282 antigen, TOLL-lik 99.8 7.1E-19 2.4E-23 169.5 13.0 165 74-243 318-515 (549)
62 2ft3_A Biglycan; proteoglycan, 99.8 2.2E-18 7.6E-23 155.9 15.3 167 68-240 80-279 (332)
63 1xku_A Decorin; proteoglycan, 99.8 2.7E-18 9.1E-23 155.2 15.8 166 70-239 80-277 (330)
64 1h6u_A Internalin H; cell adhe 99.8 1.5E-18 5E-23 155.7 13.9 153 72-238 69-230 (308)
65 1h6u_A Internalin H; cell adhe 99.8 4E-18 1.4E-22 152.8 16.5 157 71-241 46-211 (308)
66 2z62_A TOLL-like receptor 4, v 99.8 1.6E-18 5.6E-23 152.6 12.8 148 90-239 28-191 (276)
67 1h6t_A Internalin B; cell adhe 99.8 2.9E-18 1E-22 152.5 13.4 156 70-239 50-214 (291)
68 4eco_A Uncharacterized protein 99.8 7.7E-19 2.6E-23 172.6 10.3 148 85-237 242-414 (636)
69 2z7x_B TOLL-like receptor 1, v 99.8 1.6E-18 5.5E-23 166.1 12.3 43 198-240 321-363 (520)
70 2z80_A TOLL-like receptor 2, v 99.8 1.6E-18 5.6E-23 158.1 11.7 173 54-239 27-212 (353)
71 4ecn_A Leucine-rich repeat pro 99.8 1.1E-18 3.8E-23 176.0 11.1 149 86-239 487-658 (876)
72 4glp_A Monocyte differentiatio 99.8 8.5E-19 2.9E-23 157.3 9.3 167 68-239 93-286 (310)
73 2xwt_C Thyrotropin receptor; s 99.8 1.9E-18 6.6E-23 149.0 11.1 162 68-236 57-237 (239)
74 4ezg_A Putative uncharacterize 99.8 5.4E-18 1.8E-22 142.0 13.4 142 87-238 41-194 (197)
75 4fmz_A Internalin; leucine ric 99.8 5.4E-18 1.8E-22 154.1 14.4 120 112-237 217-345 (347)
76 2o6s_A Variable lymphocyte rec 99.8 1.6E-18 5.4E-23 146.4 9.8 151 67-239 29-179 (208)
77 2z63_A TOLL-like receptor 4, v 99.8 5.1E-18 1.7E-22 164.1 13.2 171 67-240 29-215 (570)
78 4ay9_X Follicle-stimulating ho 99.7 2.5E-18 8.6E-23 156.9 10.2 187 48-238 7-215 (350)
79 3j0a_A TOLL-like receptor 5; m 99.7 2.9E-18 1E-22 173.7 11.3 77 75-153 299-375 (844)
80 1m9s_A Internalin B; cell inva 99.7 1.1E-17 3.7E-22 163.0 14.5 158 68-239 45-211 (605)
81 1xeu_A Internalin C; cellular 99.7 1E-17 3.4E-22 146.9 10.6 155 71-240 24-187 (263)
82 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.7E-22 139.0 10.9 137 71-215 49-195 (197)
83 4fmz_A Internalin; leucine ric 99.7 3.4E-17 1.2E-21 148.8 13.6 143 86-240 151-302 (347)
84 4g8a_A TOLL-like receptor 4; l 99.7 4.3E-17 1.5E-21 159.1 15.0 156 85-242 415-584 (635)
85 1w8a_A SLIT protein; signaling 99.7 4.6E-17 1.6E-21 135.9 12.4 127 100-242 16-143 (192)
86 2v9t_B SLIT homolog 2 protein 99.7 4E-17 1.4E-21 139.2 12.1 134 67-215 33-166 (220)
87 3o53_A Protein LRIM1, AGAP0063 99.7 4.1E-18 1.4E-22 153.3 6.0 159 68-240 36-206 (317)
88 2v70_A SLIT-2, SLIT homolog 2 99.7 5.2E-17 1.8E-21 138.5 11.9 157 45-216 6-168 (220)
89 3oja_A Leucine-rich immune mol 99.7 1.1E-17 3.9E-22 159.2 8.5 159 68-240 36-206 (487)
90 2xot_A Amphoterin-induced prot 99.7 2E-17 6.8E-22 151.6 9.3 168 45-214 13-202 (361)
91 1o6v_A Internalin A; bacterial 99.7 9.2E-17 3.1E-21 152.0 14.1 156 71-240 204-368 (466)
92 1w8a_A SLIT protein; signaling 99.7 9.7E-17 3.3E-21 133.9 12.3 138 46-217 4-142 (192)
93 3cvr_A Invasion plasmid antige 99.7 2.1E-16 7E-21 152.7 16.0 174 46-243 39-248 (571)
94 1h6t_A Internalin B; cell adhe 99.7 1.9E-16 6.5E-21 140.8 14.4 143 86-240 42-193 (291)
95 1o6v_A Internalin A; bacterial 99.7 2.7E-16 9.2E-21 148.8 16.3 155 71-239 182-345 (466)
96 3cvr_A Invasion plasmid antige 99.7 1E-16 3.4E-21 154.9 12.8 148 67-239 60-221 (571)
97 2o6r_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 128.6 13.9 113 117-242 29-141 (177)
98 3bz5_A Internalin-J, INLJ; leu 99.7 5.9E-16 2E-20 146.2 17.0 152 68-239 66-226 (457)
99 3e6j_A Variable lymphocyte rec 99.7 3E-16 1E-20 134.5 13.7 134 67-216 41-174 (229)
100 2wfh_A SLIT homolog 2 protein 99.7 3.6E-16 1.2E-20 130.6 13.8 126 100-242 18-143 (193)
101 2ell_A Acidic leucine-rich nuc 99.7 1.2E-16 4E-21 130.2 10.5 134 88-238 22-160 (168)
102 2ast_B S-phase kinase-associat 99.7 1.3E-17 4.6E-22 150.7 4.8 147 87-235 90-257 (336)
103 3bz5_A Internalin-J, INLJ; leu 99.7 9.9E-16 3.4E-20 144.7 17.5 154 68-240 87-248 (457)
104 2je0_A Acidic leucine-rich nuc 99.7 7.8E-17 2.7E-21 128.6 8.4 130 88-234 15-149 (149)
105 2ca6_A RAN GTPase-activating p 99.7 1.6E-17 5.6E-22 153.3 3.5 152 87-240 91-289 (386)
106 2ast_B S-phase kinase-associat 99.7 2.4E-17 8.3E-22 149.0 4.5 169 68-239 95-285 (336)
107 3goz_A Leucine-rich repeat-con 99.7 2.6E-17 8.9E-22 150.8 4.8 169 72-242 28-242 (362)
108 2o6r_A Variable lymphocyte rec 99.6 6.4E-15 2.2E-19 120.9 17.1 138 47-218 4-141 (177)
109 1m9s_A Internalin B; cell inva 99.6 1.2E-15 4E-20 148.7 14.2 143 86-240 39-190 (605)
110 2wfh_A SLIT homolog 2 protein 99.6 1.9E-15 6.5E-20 126.1 13.4 111 89-215 30-140 (193)
111 2ca6_A RAN GTPase-activating p 99.6 3.8E-17 1.3E-21 150.8 2.8 155 86-242 118-320 (386)
112 4b8c_D Glucose-repressible alc 99.6 9.5E-16 3.3E-20 152.6 12.4 181 34-242 148-333 (727)
113 1xeu_A Internalin C; cellular 99.6 1.3E-15 4.3E-20 133.5 10.9 136 68-216 43-187 (263)
114 3goz_A Leucine-rich repeat-con 99.6 1.6E-16 5.6E-21 145.4 4.5 169 73-243 5-214 (362)
115 1jl5_A Outer protein YOPM; leu 99.6 9.5E-15 3.3E-19 137.8 16.6 133 90-238 131-270 (454)
116 3g06_A SSPH2 (leucine-rich rep 99.6 8.2E-15 2.8E-19 143.0 16.4 74 164-242 221-301 (622)
117 2ell_A Acidic leucine-rich nuc 99.6 3.6E-15 1.2E-19 121.3 11.2 135 61-219 24-164 (168)
118 4b8c_D Glucose-repressible alc 99.6 2.2E-15 7.4E-20 150.0 8.7 134 81-219 215-359 (727)
119 1jl5_A Outer protein YOPM; leu 99.6 1.3E-14 4.4E-19 136.9 13.2 132 86-239 233-371 (454)
120 3g06_A SSPH2 (leucine-rich rep 99.6 3.5E-15 1.2E-19 145.7 8.8 88 69-174 64-151 (622)
121 2je0_A Acidic leucine-rich nuc 99.6 1E-14 3.6E-19 116.1 9.3 122 71-210 22-149 (149)
122 1dce_A Protein (RAB geranylger 99.6 2E-16 6.9E-21 153.1 -1.6 147 87-240 346-548 (567)
123 1a9n_A U2A', U2A'; complex (nu 99.5 6.8E-15 2.3E-19 120.7 7.6 132 85-237 14-152 (176)
124 1ds9_A Outer arm dynein; leuci 99.5 2E-17 7E-22 138.6 -8.3 113 86-218 44-157 (198)
125 3g39_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 115.5 11.6 108 118-241 11-118 (170)
126 1z7x_W Ribonuclease inhibitor; 99.5 3.5E-16 1.2E-20 147.3 -0.9 149 89-239 198-384 (461)
127 1z7x_W Ribonuclease inhibitor; 99.5 1.2E-15 4E-20 143.8 1.1 122 116-237 199-353 (461)
128 2r9u_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 113.6 11.7 107 119-241 15-121 (174)
129 1dce_A Protein (RAB geranylger 99.5 8.5E-14 2.9E-18 134.7 12.4 113 117-232 442-567 (567)
130 4ay9_X Follicle-stimulating ho 99.5 7.7E-14 2.6E-18 127.1 8.9 160 68-228 56-229 (350)
131 3g39_A Variable lymphocyte rec 99.5 2.9E-13 9.9E-18 110.4 11.4 86 116-214 30-115 (170)
132 1ds9_A Outer arm dynein; leuci 99.5 6.6E-16 2.3E-20 129.3 -4.8 126 68-215 50-186 (198)
133 2r9u_A Variable lymphocyte rec 99.4 7.8E-13 2.7E-17 108.3 11.9 104 94-215 16-119 (174)
134 1a9n_A U2A', U2A'; complex (nu 99.4 2E-13 6.7E-18 111.9 7.0 124 70-214 23-153 (176)
135 3sb4_A Hypothetical leucine ri 99.4 8.4E-13 2.9E-17 119.1 9.2 57 80-139 83-147 (329)
136 2ifg_A High affinity nerve gro 99.4 2.7E-12 9.4E-17 116.4 11.2 104 121-240 13-118 (347)
137 2ifg_A High affinity nerve gro 99.4 2.9E-12 9.9E-17 116.2 11.1 108 49-176 7-115 (347)
138 3un9_A NLR family member X1; l 99.3 1.1E-13 3.7E-18 127.2 -0.1 62 177-238 183-252 (372)
139 3un9_A NLR family member X1; l 99.2 1.9E-12 6.4E-17 118.9 -0.2 176 61-238 72-283 (372)
140 3sb4_A Hypothetical leucine ri 99.2 5E-11 1.7E-15 107.4 8.7 142 89-234 48-283 (329)
141 3ogk_B Coronatine-insensitive 99.1 5.1E-12 1.7E-16 122.6 0.4 63 176-238 462-526 (592)
142 3ogk_B Coronatine-insensitive 99.0 4.4E-11 1.5E-15 115.9 2.2 123 88-214 162-306 (592)
143 2ra8_A Uncharacterized protein 99.0 2.9E-10 9.9E-15 103.7 4.1 151 86-241 135-323 (362)
144 2p1m_B Transport inhibitor res 98.9 4.2E-10 1.4E-14 109.0 4.8 98 88-187 103-221 (594)
145 4fdw_A Leucine rich hypothetic 98.9 6.6E-09 2.3E-13 96.1 12.3 148 79-233 169-331 (401)
146 4fdw_A Leucine rich hypothetic 98.9 7.9E-09 2.7E-13 95.6 11.8 161 68-238 182-358 (401)
147 2p1m_B Transport inhibitor res 98.9 4.1E-11 1.4E-15 116.2 -4.1 125 115-239 371-520 (594)
148 3rw6_A Nuclear RNA export fact 98.7 9.7E-11 3.3E-15 102.0 -6.5 14 48-61 76-89 (267)
149 2ra8_A Uncharacterized protein 98.7 2E-08 6.7E-13 91.6 5.8 144 86-236 168-341 (362)
150 1io0_A Tropomodulin; LRR prote 98.6 1.8E-08 6.2E-13 83.0 3.2 115 111-238 31-164 (185)
151 1io0_A Tropomodulin; LRR prote 98.6 3.1E-08 1.1E-12 81.5 3.6 100 132-244 28-142 (185)
152 3rw6_A Nuclear RNA export fact 98.4 2.2E-07 7.6E-12 80.7 4.2 83 113-208 167-258 (267)
153 4fs7_A Uncharacterized protein 98.0 4E-05 1.4E-09 70.3 10.7 58 176-235 296-353 (394)
154 4fs7_A Uncharacterized protein 97.9 2.5E-05 8.7E-10 71.6 8.4 129 77-211 58-195 (394)
155 3e4g_A ATP synthase subunit S, 97.9 4.1E-06 1.4E-10 67.9 2.5 78 91-170 62-145 (176)
156 3e4g_A ATP synthase subunit S, 97.9 7E-06 2.4E-10 66.4 3.7 36 116-151 61-96 (176)
157 4gt6_A Cell surface protein; l 97.7 0.00012 4.1E-09 67.1 10.1 58 176-235 310-367 (394)
158 4gt6_A Cell surface protein; l 97.7 8.2E-05 2.8E-09 68.2 8.5 121 111-237 260-390 (394)
159 4h09_A Hypothetical leucine ri 97.7 0.00028 9.4E-09 64.2 11.7 121 112-235 213-343 (379)
160 4h09_A Hypothetical leucine ri 97.5 0.00055 1.9E-08 62.2 10.8 134 85-225 212-356 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 0.0001 3.6E-09 60.7 4.3 59 178-236 99-168 (197)
162 3rfe_A Platelet glycoprotein I 97.3 0.00055 1.9E-08 52.5 6.6 61 180-242 11-72 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 0.0002 7E-09 58.9 4.0 114 86-214 37-170 (197)
164 4gt4_A Tyrosine-protein kinase 97.2 6.3E-05 2.2E-09 66.7 0.7 40 285-324 22-64 (308)
165 3uim_A Brassinosteroid insensi 97.2 0.00021 7.3E-09 63.3 4.1 44 278-324 17-62 (326)
166 2c30_A Serine/threonine-protei 97.1 0.00039 1.3E-08 61.7 4.5 45 278-324 22-78 (321)
167 2qkw_B Protein kinase; three-h 96.8 0.00031 1E-08 62.2 0.9 43 279-324 27-71 (321)
168 3rfe_A Platelet glycoprotein I 96.7 0.0027 9.1E-08 48.6 6.0 35 118-152 33-67 (130)
169 4aoj_A High affinity nerve gro 96.7 0.001 3.6E-08 59.4 3.7 30 295-324 47-79 (329)
170 3p1a_A MYT1 kinase, membrane-a 96.6 0.00027 9.2E-09 62.4 -0.7 32 291-324 57-90 (311)
171 3fpq_A Serine/threonine-protei 96.6 0.0014 4.9E-08 57.4 3.8 30 293-324 30-59 (290)
172 4aw2_A Serine/threonine-protei 96.4 0.0014 4.9E-08 60.9 2.7 42 281-324 64-107 (437)
173 4fih_A Serine/threonine-protei 96.3 0.0027 9.4E-08 57.0 4.3 28 295-324 80-107 (346)
174 4aw0_A HPDK1, 3-phosphoinositi 96.3 0.002 6.7E-08 57.1 3.3 32 291-324 32-65 (311)
175 2vd5_A DMPK protein; serine/th 96.2 0.0022 7.6E-08 59.1 3.0 42 281-324 51-94 (412)
176 4g3f_A NF-kappa-beta-inducing 96.2 0.0031 1.1E-07 56.4 3.7 28 295-324 64-91 (336)
177 4b99_A Mitogen-activated prote 96.1 0.0038 1.3E-07 57.2 4.1 28 295-324 60-87 (398)
178 4fie_A Serine/threonine-protei 95.9 0.0054 1.9E-07 56.6 4.3 28 295-324 157-184 (423)
179 3omv_A RAF proto-oncogene seri 95.9 0.004 1.4E-07 55.0 3.2 26 294-324 41-66 (307)
180 3llt_A Serine/threonine kinase 95.8 0.0022 7.6E-08 57.5 1.1 44 279-324 23-68 (360)
181 3v5w_A G-protein coupled recep 95.8 0.0055 1.9E-07 59.8 3.8 32 291-324 189-222 (689)
182 3v8s_A RHO-associated protein 95.8 0.0048 1.6E-07 56.8 3.2 40 283-324 61-102 (410)
183 4gyi_A RIO2 kinase; protein ki 95.7 0.0073 2.5E-07 55.1 4.1 27 295-324 101-127 (397)
184 3dzo_A Rhoptry kinase domain; 95.7 0.0064 2.2E-07 55.9 3.6 28 295-324 84-111 (413)
185 4ase_A Vascular endothelial gr 95.3 0.011 3.9E-07 53.1 4.0 30 295-324 70-102 (353)
186 2y7j_A Phosphorylase B kinase 95.3 0.013 4.5E-07 52.8 4.3 41 282-324 85-127 (365)
187 2w4o_A Calcium/calmodulin-depe 95.2 0.014 5E-07 52.1 4.2 33 290-324 52-86 (349)
188 3kul_A Ephrin type-A receptor 95.1 0.015 5.1E-07 51.4 4.0 45 280-324 29-85 (325)
189 3hko_A Calcium/calmodulin-depe 95.1 0.012 4.2E-07 52.1 3.3 37 286-324 21-59 (345)
190 4dc2_A Protein kinase C IOTA t 95.0 0.015 5E-07 53.3 3.6 32 291-324 52-85 (396)
191 3fhr_A MAP kinase-activated pr 95.0 0.015 5.2E-07 51.6 3.7 28 295-324 35-62 (336)
192 1zth_A RIO1 serine protein kin 95.0 0.017 5.9E-07 49.3 3.9 29 294-324 52-82 (258)
193 2iwi_A Serine/threonine-protei 95.0 0.013 4.6E-07 51.1 3.2 35 288-324 28-64 (312)
194 2vx3_A Dual specificity tyrosi 94.9 0.014 4.7E-07 52.9 3.3 34 289-324 52-87 (382)
195 3an0_A Dual specificity mitoge 94.9 0.017 5.8E-07 51.2 3.8 28 295-324 57-84 (340)
196 1j1b_A Glycogen synthase kinas 94.9 0.019 6.6E-07 52.8 4.1 28 295-324 60-87 (420)
197 3ubd_A Ribosomal protein S6 ki 94.9 0.018 6E-07 50.8 3.7 31 294-324 29-60 (304)
198 3uqc_A Probable conserved tran 94.8 0.02 6.9E-07 49.7 4.0 28 295-324 37-64 (286)
199 3byv_A Rhoptry kinase; malaria 94.8 0.017 5.9E-07 52.1 3.7 28 295-324 79-106 (377)
200 2r5t_A Serine/threonine-protei 94.8 0.02 6.9E-07 51.9 4.1 32 291-324 38-71 (373)
201 1zar_A RIO2 kinase; serine kin 94.8 0.022 7.7E-07 49.4 4.2 27 295-324 96-122 (282)
202 2zmd_A Dual specificity protei 94.7 0.023 7.9E-07 51.7 4.3 27 295-324 62-88 (390)
203 3i6u_A CDS1, serine/threonine- 94.7 0.026 8.8E-07 51.9 4.6 33 290-324 134-168 (419)
204 3q60_A ROP5B; pseudokinase, tr 94.7 0.022 7.5E-07 51.3 4.0 28 295-324 68-95 (371)
205 3cbl_A C-FES, proto-oncogene t 94.7 0.018 6.3E-07 52.0 3.4 28 295-324 120-147 (377)
206 2qol_A Ephrin receptor; recept 94.7 0.015 5.3E-07 52.5 2.9 30 295-324 51-81 (373)
207 3a99_A Proto-oncogene serine/t 94.7 0.022 7.6E-07 50.1 3.9 28 295-324 49-76 (320)
208 3lm5_A Serine/threonine-protei 94.5 0.024 8.2E-07 50.1 3.6 28 295-324 35-62 (327)
209 3kvw_A DYRK2, dual specificity 94.4 0.026 8.9E-07 52.1 3.9 28 295-324 103-130 (429)
210 1rdq_E PKA C-alpha, CAMP-depen 94.4 0.028 9.5E-07 50.4 3.9 28 295-324 47-74 (350)
211 3nsz_A CK II alpha, casein kin 94.4 0.027 9.3E-07 49.5 3.8 28 295-324 42-69 (330)
212 1u5q_A Serine/threonine protei 94.4 0.029 9.9E-07 50.2 4.0 28 295-324 60-87 (348)
213 4ejn_A RAC-alpha serine/threon 94.4 0.023 7.8E-07 52.6 3.4 32 291-324 148-181 (446)
214 1qcf_A Haematopoetic cell kina 94.3 0.03 1E-06 52.0 4.1 27 295-324 194-220 (454)
215 3uto_A Twitchin; kinase, muscl 94.3 0.025 8.4E-07 54.4 3.7 32 291-324 157-190 (573)
216 3cek_A Dual specificity protei 94.3 0.034 1.2E-06 48.6 4.3 27 295-324 34-60 (313)
217 1wak_A Serine/threonine-protei 94.3 0.03 1E-06 50.5 4.0 28 295-324 43-70 (397)
218 1vzo_A Ribosomal protein S6 ki 94.2 0.033 1.1E-06 49.9 4.1 34 291-324 54-90 (355)
219 3e7e_A HBUB1, BUB1A, mitotic c 94.2 0.026 9E-07 50.6 3.4 30 295-324 71-103 (365)
220 3c4z_A Rhodopsin kinase; Ser/T 94.2 0.031 1.1E-06 53.4 3.9 28 295-324 191-218 (543)
221 2x4f_A Myosin light chain kina 94.1 0.026 9E-07 51.0 3.2 28 295-324 95-122 (373)
222 3p86_A Serine/threonine-protei 94.1 0.038 1.3E-06 48.4 4.1 26 295-324 43-68 (309)
223 2acx_A G protein-coupled recep 94.0 0.029 9.9E-07 53.9 3.4 32 291-324 184-217 (576)
224 4exu_A Mitogen-activated prote 94.0 0.037 1.3E-06 49.8 4.0 28 295-324 48-75 (371)
225 3eqc_A Dual specificity mitoge 94.0 0.037 1.2E-06 49.5 3.9 28 295-324 39-66 (360)
226 3ll6_A Cyclin G-associated kin 94.0 0.043 1.5E-06 48.1 4.3 28 295-324 34-61 (337)
227 1t4h_A Serine/threonine-protei 94.0 0.037 1.3E-06 47.7 3.8 29 294-324 31-59 (290)
228 1nxk_A MAP kinase-activated pr 94.0 0.034 1.2E-06 50.8 3.6 28 295-324 68-95 (400)
229 2bdw_A Hypothetical protein K1 93.9 0.027 9.4E-07 50.6 2.9 34 289-324 27-62 (362)
230 3gbz_A Kinase, CMGC CDK; ssgci 93.9 0.035 1.2E-06 49.0 3.6 34 289-324 32-67 (329)
231 3pfq_A PKC-B, PKC-beta, protei 93.9 0.031 1.1E-06 54.8 3.5 32 291-324 341-374 (674)
232 3l9p_A Anaplastic lymphoma kin 93.9 0.03 1E-06 50.4 3.1 30 295-324 77-109 (367)
233 2wqm_A Serine/threonine-protei 93.9 0.045 1.6E-06 47.6 4.2 28 295-324 38-65 (310)
234 1kob_A Twitchin; kinase, intra 93.8 0.038 1.3E-06 50.3 3.7 28 295-324 57-84 (387)
235 3com_A Serine/threonine-protei 93.8 0.036 1.2E-06 48.3 3.4 32 291-324 29-62 (314)
236 1mqb_A Ephrin type-A receptor 93.7 0.046 1.6E-06 48.3 4.0 44 281-324 25-81 (333)
237 3mdy_A Bone morphogenetic prot 93.7 0.04 1.4E-06 48.4 3.5 32 289-324 35-68 (337)
238 3rp9_A Mitogen-activated prote 93.7 0.028 9.5E-07 52.2 2.5 28 295-324 59-86 (458)
239 3qyz_A Mitogen-activated prote 93.6 0.049 1.7E-06 48.8 4.0 33 290-324 26-60 (364)
240 1luf_A Muscle-specific tyrosin 93.5 0.055 1.9E-06 47.7 4.1 35 290-324 46-85 (343)
241 1fmk_A C-SRC, P60-SRC, tyrosin 93.5 0.055 1.9E-06 50.2 4.1 27 295-324 190-216 (452)
242 2buj_A Serine/threonine-protei 93.5 0.057 2E-06 47.1 4.1 28 295-324 35-62 (317)
243 2nru_A Interleukin-1 receptor- 93.4 0.057 1.9E-06 46.9 4.0 26 295-324 37-62 (307)
244 2h34_A Serine/threonine-protei 93.4 0.057 2E-06 47.1 3.9 28 295-324 40-67 (309)
245 2xir_A Vascular endothelial gr 93.4 0.043 1.5E-06 47.7 3.1 35 290-324 26-65 (316)
246 3n9x_A Phosphotransferase; mal 93.4 0.044 1.5E-06 50.5 3.3 28 295-324 32-59 (432)
247 2fst_X Mitogen-activated prote 93.3 0.041 1.4E-06 49.6 2.9 28 295-324 35-62 (367)
248 2owb_A Serine/threonine-protei 93.3 0.054 1.9E-06 47.9 3.6 28 295-324 47-74 (335)
249 2ozo_A Tyrosine-protein kinase 93.2 0.06 2E-06 52.2 4.0 29 296-324 343-371 (613)
250 3ttj_A Mitogen-activated prote 93.2 0.065 2.2E-06 50.0 4.1 28 295-324 68-95 (464)
251 1k9a_A Carboxyl-terminal SRC k 93.1 0.065 2.2E-06 49.7 4.1 26 295-324 199-224 (450)
252 3lxp_A Non-receptor tyrosine-p 93.1 0.075 2.6E-06 46.6 4.3 30 295-324 37-68 (318)
253 1b6c_B TGF-B superfamily recep 93.0 0.061 2.1E-06 47.4 3.5 32 289-324 40-73 (342)
254 3q5i_A Protein kinase; CDPK, m 93.0 0.07 2.4E-06 50.2 4.1 28 295-324 42-69 (504)
255 2h8h_A Proto-oncogene tyrosine 92.9 0.073 2.5E-06 50.6 4.2 27 295-324 273-299 (535)
256 3op5_A Serine/threonine-protei 92.9 0.051 1.7E-06 48.7 2.9 30 295-324 41-73 (364)
257 4fl3_A Tyrosine-protein kinase 92.8 0.074 2.5E-06 51.7 4.0 30 295-324 375-404 (635)
258 2psq_A Fibroblast growth facto 92.7 0.069 2.4E-06 48.1 3.6 30 295-324 87-121 (370)
259 2yfx_A Tyrosine-protein kinase 92.7 0.06 2.1E-06 47.3 3.1 30 295-324 36-68 (327)
260 3nyv_A Calmodulin-domain prote 92.7 0.069 2.4E-06 49.9 3.6 28 295-324 32-59 (484)
261 2w1i_A JAK2; chromosomal rearr 92.6 0.091 3.1E-06 46.1 4.1 30 295-324 47-78 (326)
262 1opk_A P150, C-ABL, proto-onco 92.4 0.05 1.7E-06 51.2 2.2 28 295-324 226-253 (495)
263 3brb_A Proto-oncogene tyrosine 92.3 0.074 2.5E-06 46.3 3.1 30 295-324 40-70 (313)
264 1rjb_A FL cytokine receptor; k 92.2 0.084 2.9E-06 46.6 3.4 30 295-324 51-83 (344)
265 3lij_A Calcium/calmodulin depe 92.2 0.11 3.6E-06 48.8 4.1 28 295-324 43-70 (494)
266 3gni_B Strad alpha; kinase fol 92.2 0.092 3.1E-06 47.4 3.6 28 295-324 31-60 (389)
267 2pvf_A Fibroblast growth facto 92.1 0.1 3.6E-06 45.9 3.8 30 295-324 41-75 (334)
268 2pml_X PFPK7, Ser/Thr protein 91.7 0.12 4.3E-06 45.5 4.0 26 295-324 37-62 (348)
269 2jii_A Serine/threonine-protei 91.6 0.1 3.5E-06 46.4 3.2 30 295-324 48-83 (352)
270 3c1x_A Hepatocyte growth facto 91.4 0.11 3.8E-06 46.8 3.3 30 295-324 95-125 (373)
271 2i1m_A Macrophage colony-stimu 91.2 0.15 5.3E-06 44.6 3.9 30 295-324 52-84 (333)
272 2v62_A Serine/threonine-protei 90.8 0.094 3.2E-06 46.5 2.2 30 295-324 43-73 (345)
273 4e7w_A Glycogen synthase kinas 90.7 0.16 5.5E-06 46.0 3.7 27 295-324 46-72 (394)
274 3tt0_A Basic fibroblast growth 90.4 0.2 6.9E-06 45.1 4.0 30 295-324 75-109 (382)
275 1p4o_A Insulin-like growth fac 89.5 0.19 6.4E-06 43.8 3.0 31 294-324 30-63 (322)
276 3lb7_A RAF proto-oncogene seri 89.5 0.25 8.4E-06 43.0 3.7 25 295-324 42-66 (307)
277 2pzi_A Probable serine/threoni 89.4 0.18 6E-06 49.4 3.0 29 295-324 86-114 (681)
278 3f66_A Hepatocyte growth facto 89.3 0.23 8E-06 42.6 3.4 31 294-324 30-61 (298)
279 2y4i_B KSR2, HKSR2, kinase sup 87.5 0.33 1.1E-05 42.1 3.2 25 295-324 39-63 (319)
280 2j0j_A Focal adhesion kinase 1 85.7 0.57 1.9E-05 45.6 4.1 30 295-324 396-426 (656)
281 1fvr_A Tyrosine-protein kinase 83.3 0.66 2.2E-05 40.5 3.0 31 294-324 30-60 (327)
282 3en9_A Glycoprotease, O-sialog 81.2 0.99 3.4E-05 42.8 3.6 26 295-324 342-367 (540)
283 2lz0_A Uncharacterized protein 79.0 3.2 0.00011 29.6 4.9 48 76-126 6-53 (100)
284 4b9d_A Serine/threonine-protei 71.7 1.2 4E-05 39.8 1.1 18 295-312 30-47 (350)
285 2lz0_A Uncharacterized protein 64.7 18 0.00062 25.5 6.1 49 101-150 5-53 (100)
286 3soc_A Activin receptor type-2 64.2 3.4 0.00012 35.8 2.5 17 295-311 30-46 (322)
287 3og7_A AKAP9-BRAF fusion prote 64.1 3 0.0001 35.4 2.1 17 295-311 30-46 (289)
288 3gen_A Tyrosine-protein kinase 49.8 6.5 0.00022 33.0 1.8 17 295-311 30-46 (283)
289 3c0i_A Peripheral plasma membr 49.8 11 0.00037 33.1 3.3 18 294-311 29-46 (351)
290 3coi_A Mitogen-activated prote 49.4 7.2 0.00025 34.1 2.1 17 295-311 30-46 (353)
291 4aaa_A Cyclin-dependent kinase 48.4 11 0.00037 32.6 3.0 17 295-311 31-47 (331)
292 3dls_A PAS domain-containing s 48.0 6.2 0.00021 34.4 1.4 17 295-311 30-46 (335)
293 2xrw_A Mitogen-activated prote 46.6 8.5 0.00029 34.0 2.1 16 295-310 31-46 (371)
294 2x7f_A TRAF2 and NCK-interacti 43.8 13 0.00044 31.9 2.8 17 295-311 30-46 (326)
295 1cm8_A Phosphorylated MAP kina 43.6 13 0.00044 32.8 2.8 17 295-311 31-47 (367)
296 2dyl_A Dual specificity mitoge 43.0 16 0.00054 31.0 3.2 17 295-311 31-47 (318)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=5.4e-29 Score=224.39 Aligned_cols=215 Identities=25% Similarity=0.367 Sum_probs=140.3
Q ss_pred CCCHHHHHHHHcCCC-----CCCCCCCCCCCCCCcc--ceeeEeCCC---CCeeEeeccccccCC---------------
Q 045233 21 SPIQLETKALLDTGW-----WNSSFWMANYSSDHCK--WIGITCNSA---GSIIGLNLSWYDVDL--------------- 75 (325)
Q Consensus 21 ~~~~~~~~~ll~~~~-----~~~~~W~~~~~~~~C~--w~gv~c~~~---~~v~~l~l~~l~~~~--------------- 75 (325)
.|.+.|+.||++++. ....+| ..+.|||. |.||+|+.. ++++.+++++..+..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W--~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSW--LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTC--CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCC--CCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 467889999986321 135678 34678998 999999864 789999988765543
Q ss_pred -------ccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233 76 -------NAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG 148 (325)
Q Consensus 76 -------n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 148 (325)
|.+.......+..+++|++|++ ++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~L--s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYI--THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEE--EEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEEC--cCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 1121111122445555555555 5555555555555555556666666665555555556666666666666
Q ss_pred cCcCCCcCchhccCCC-CCcEEEcCcCCC----------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCC
Q 045233 149 NNNLTGPIPSTLARLT-NLKYLDLKVTSM----------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPV 217 (325)
Q Consensus 149 ~N~l~~~~p~~~~~l~-~L~~L~l~~n~l----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 217 (325)
+|++++.+|..+..++ +|++|++++|.+ ..|++|++++|.+++..|..+..+++|+.|++++|.+++.+
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 6666555666666555 666666665511 12667777777777777777788888888888888888665
Q ss_pred CCcccCCCCCcEEEccCCCCCch
Q 045233 218 PFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 218 p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
|. +..+++|+.|++++|.+.+.
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEEC
T ss_pred Cc-ccccCCCCEEECcCCcccCc
Confidence 55 67788888888888888653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=4.9e-28 Score=242.98 Aligned_cols=216 Identities=24% Similarity=0.316 Sum_probs=174.1
Q ss_pred hhccCCCHHHHHHHHcCCCC-----CCCCCCCCCCCCCccceeeEeCCCCCeeEeeccccccCCc---------------
Q 045233 17 AFAFSPIQLETKALLDTGWW-----NSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLN--------------- 76 (325)
Q Consensus 17 ~~~~~~~~~~~~~ll~~~~~-----~~~~W~~~~~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n--------------- 76 (325)
++++++.+.|+.||+++|.. .+++|. .+.|||.|.||+|+ .++|+.++|+...+...
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~~l~~W~--~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKNLLPDWS--SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTTSSTTCC--TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CccccCCHHHHHHHHHHHhhCCCcccccCCC--CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 45555678899999975422 477894 56799999999998 78999999986554332
Q ss_pred -------cccccCccccCCCCCCCEEEeccccCcCCCCCcc--cccCCCcCCEEecccCCCCCCCchhh-cCCcccceee
Q 045233 77 -------AQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPS--DISALSKLQLLDLSLNRLSGTIPSNI-GNLRNLVHLD 146 (325)
Q Consensus 77 -------~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ 146 (325)
.+..++ ..+..+++|++|++ ++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|+
T Consensus 81 ~l~~~~~~~~~l~-~~~~~l~~L~~L~L--s~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 81 SLFLSNSHINGSV-SGFKCSASLTSLDL--SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp EEECTTSCEEECC-CCCCCCTTCCEEEC--CSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred ccCCcCCCcCCCc-hhhccCCCCCEEEC--CCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 111111 24788999999999 89999988888 89999999999999999988888765 7899999999
Q ss_pred cccCcCCCcCchh---ccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCC
Q 045233 147 LGNNNLTGPIPST---LARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 147 Ls~N~l~~~~p~~---~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 214 (325)
+++|++++..|.. +.++++|++|++++| .+++|++|++++|.+++.+|. ++.+++|++|++++|.++
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence 9999999888876 788899999999888 567888899999888877776 888888888888888888
Q ss_pred CCCCCcccCCCCCcEEEccCCCCCc
Q 045233 215 GPVPFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 215 ~~~p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
+.+|..++.+++|+.|++++|.+.+
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~ 261 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVG 261 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEE
T ss_pred CcccHHHhcCCCCCEEECCCCcccC
Confidence 8888888888888888888887764
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=3.1e-26 Score=225.29 Aligned_cols=206 Identities=18% Similarity=0.322 Sum_probs=162.6
Q ss_pred CCCHHHHHHHHc-------CCCCC-------CCCCCCCCCCCCccc---eeeEeCCCCCeeEeeccccccCCccccccCc
Q 045233 21 SPIQLETKALLD-------TGWWN-------SSFWMANYSSDHCKW---IGITCNSAGSIIGLNLSWYDVDLNAQAQLSQ 83 (325)
Q Consensus 21 ~~~~~~~~~ll~-------~~~~~-------~~~W~~~~~~~~C~w---~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~ 83 (325)
++...|+.||.+ ..|.. ..+| +.+.|+|.| .||+|+..++|+.++|+...+.+. ++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W--~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~----lp- 98 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANW--NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGR----VP- 98 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCC--CCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEE----EC-
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCC--CCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCc----CC-
Confidence 335578888886 23443 3378 456899999 999999889999999986555432 22
Q ss_pred cccCCCCCCCEEEeccccC-------------------------------------------------------------
Q 045233 84 LNFSCFPNLESLRIQAYYY------------------------------------------------------------- 102 (325)
Q Consensus 84 ~~~~~l~~L~~L~l~~~~n------------------------------------------------------------- 102 (325)
..++.+++|++|++ ++|
T Consensus 99 ~~l~~L~~L~~L~L--s~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 99 DAIGQLTELEVLAL--GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp GGGGGCTTCCEEES--CCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred hHHhcCccceEEEC--cCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 35788899999999 555
Q ss_pred -----------------cCCCCCcccccCCCcCCEEecccCCCCCC-----------------Cchhhc--CCcccceee
Q 045233 103 -----------------GFTGSIPSDISALSKLQLLDLSLNRLSGT-----------------IPSNIG--NLRNLVHLD 146 (325)
Q Consensus 103 -----------------~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~ 146 (325)
.+++ +|+.++++++|++|++++|.+++. +|+.++ ++++|++|+
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 3345 777888899999999999998875 888888 899999999
Q ss_pred cccCcCCCcCchhccCCCCCcEEEcCcCC-C------------------CCCcEEEccCCcCCCCCch--hhhCCCCCCE
Q 045233 147 LGNNNLTGPIPSTLARLTNLKYLDLKVTS-M------------------KNLTWLDISNNKIEGSIPG--ELTELSRPDC 205 (325)
Q Consensus 147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-l------------------~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~ 205 (325)
+++|++.+.+|+.+.++++|++|++++|. + ++|++|++++|+++ .+|. .++.+++|+.
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~ 334 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM 334 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE
Confidence 99999988899889999999999998885 2 67899999999998 7787 8888999999
Q ss_pred EECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 206 LSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
|++++|.++|.+| .++.+++|+.|++++|.+.
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence 9999998887777 6666666666666666544
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5.3e-25 Score=193.99 Aligned_cols=172 Identities=22% Similarity=0.236 Sum_probs=154.6
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
++.++++.|.+..++...|..+++|++|++ ++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYL--NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEEC--CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEEC--CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 556777788888888778999999999999 899998776677889999999999999999777777899999999999
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGP 216 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 216 (325)
++|++++..|..|..+++|++|++++| .+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 999999877788999999999999998 467899999999999987777899999999999999999987
Q ss_pred CCCcccCCCCCcEEEccCCCCCchH
Q 045233 217 VPFSNKQLSTMYIVRLSPNKGLGSN 241 (325)
Q Consensus 217 ~p~~~~~l~~L~~L~l~~N~~~~~~ 241 (325)
.+..+..+++|+.|++++|++.|..
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CHHHhccccCCCEEEecCCCeeCCC
Confidence 7778999999999999999998764
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=3.1e-25 Score=201.07 Aligned_cols=207 Identities=20% Similarity=0.234 Sum_probs=120.8
Q ss_pred CCHHHHHHHHcCCC-------CCCCCCC--CCCCCCCccceeeEeCC---------CCCeeEeeccccccCCccccccCc
Q 045233 22 PIQLETKALLDTGW-------WNSSFWM--ANYSSDHCKWIGITCNS---------AGSIIGLNLSWYDVDLNAQAQLSQ 83 (325)
Q Consensus 22 ~~~~~~~~ll~~~~-------~~~~~W~--~~~~~~~C~w~gv~c~~---------~~~v~~l~l~~l~~~~n~~~~l~~ 83 (325)
+...|+.||++.+. ....+|. .....++|.|.|+.|+. .++++.+++++. .+..++.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n-----~l~~lp~ 98 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-----PLPQFPD 98 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS-----CCSSCCS
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC-----CchhcCh
Confidence 35567788886332 2234562 12356899999999952 356777776643 3333333
Q ss_pred cccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccC-
Q 045233 84 LNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLAR- 162 (325)
Q Consensus 84 ~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~- 162 (325)
.+..+++|++|++ ++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 99 -~l~~l~~L~~L~L--~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 99 -QAFRLSHLQHMTI--DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp -CGGGGTTCSEEEE--ESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred -hhhhCCCCCEEEC--CCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 2444666666666 566665 56666666666666666666666 55666666666666666666655555554433
Q ss_pred --------CCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCC
Q 045233 163 --------LTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQL 224 (325)
Q Consensus 163 --------l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 224 (325)
+++|++|++++| .+++|++|++++|++++ +|..+..+++|+.|++++|++.+.+|..++.+
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 556666666555 23455555555555552 34445555555555555555555555555555
Q ss_pred CCCcEEEccCCCCCc
Q 045233 225 STMYIVRLSPNKGLG 239 (325)
Q Consensus 225 ~~L~~L~l~~N~~~~ 239 (325)
++|+.|++++|++.+
T Consensus 253 ~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 253 APLKRLILKDCSNLL 267 (328)
T ss_dssp CCCCEEECTTCTTCC
T ss_pred CCCCEEECCCCCchh
Confidence 555555555555443
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.2e-23 Score=183.35 Aligned_cols=181 Identities=23% Similarity=0.238 Sum_probs=151.8
Q ss_pred CCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC
Q 045233 48 DHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR 127 (325)
Q Consensus 48 ~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 127 (325)
+||.|.|..|... .+.++ .+.+.+..++.. -.++++.|++ ++|.+.+..+..+.++++|++|++++|.
T Consensus 3 ~Cp~~~gC~C~~~--~~~l~-----~~~~~l~~~p~~---~~~~l~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 3 TCETVTGCTCNEG--KKEVD-----CQGKSLDSVPSG---IPADTEKLDL--QSTGLATLSDATFRGLTKLTWLNLDYNQ 70 (251)
T ss_dssp -CHHHHSSEEEGG--GTEEE-----CTTCCCSSCCSC---CCTTCCEEEC--TTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCceEcCCC--CeEEe-----cCCCCccccCCC---CCCCCCEEEc--cCCCcCccCHhHhcCcccCCEEECCCCc
Confidence 5778888888532 12233 344555555432 2368899999 8899998888889999999999999999
Q ss_pred CCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchh
Q 045233 128 LSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGE 196 (325)
Q Consensus 128 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~ 196 (325)
+++..+..|..+++|++|++++|++++..+..|..+++|++|++++| .+++|++|++++|++++..+..
T Consensus 71 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 99877888899999999999999999777778889999999999988 4678999999999999777778
Q ss_pred hhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 197 LTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 197 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999999999988888899999999999999999886
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=2.1e-24 Score=217.60 Aligned_cols=209 Identities=18% Similarity=0.233 Sum_probs=151.4
Q ss_pred cCCCHHHHHHHHcCCCC-CCCCCCCCC---CCCC--ccc------------eeeEeCCCCCeeEeeccccccCCcccccc
Q 045233 20 FSPIQLETKALLDTGWW-NSSFWMANY---SSDH--CKW------------IGITCNSAGSIIGLNLSWYDVDLNAQAQL 81 (325)
Q Consensus 20 ~~~~~~~~~~ll~~~~~-~~~~W~~~~---~~~~--C~w------------~gv~c~~~~~v~~l~l~~l~~~~n~~~~l 81 (325)
+++...|+.||++++.. ..++|.... ..++ |.| .||.|+..++|+.++|+...+.+. +
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~----i 339 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR----V 339 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEE----E
T ss_pred cccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCc----C
Confidence 34466799999974321 122674221 2355 999 999999889999999986555432 2
Q ss_pred CccccCCCCCCCEEEeccccC-----------------------------------------------------------
Q 045233 82 SQLNFSCFPNLESLRIQAYYY----------------------------------------------------------- 102 (325)
Q Consensus 82 ~~~~~~~l~~L~~L~l~~~~n----------------------------------------------------------- 102 (325)
+ ..++.+++|+.|+++ +.|
T Consensus 340 p-~~l~~L~~L~~LdLs-s~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 340 P-DAIGQLTELKVLSFG-THSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp C-GGGGGCTTCCEEESC-CTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred c-hHHhccccceEeeec-ccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 2 346778888888882 122
Q ss_pred ------------------cCCCCCcccccCCCcCCEEecccCCCCC-----------------CCchhhc--CCccccee
Q 045233 103 ------------------GFTGSIPSDISALSKLQLLDLSLNRLSG-----------------TIPSNIG--NLRNLVHL 145 (325)
Q Consensus 103 ------------------~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~L 145 (325)
.+.+ +|..++++++|++|+|++|.+++ .+|+.++ ++++|++|
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred ccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 2222 67778888888888888888886 2777766 88888888
Q ss_pred ecccCcCCCcCchhccCCCCCcEEEcCcCC-CC-------------------CCcEEEccCCcCCCCCch--hhhCCCCC
Q 045233 146 DLGNNNLTGPIPSTLARLTNLKYLDLKVTS-MK-------------------NLTWLDISNNKIEGSIPG--ELTELSRP 203 (325)
Q Consensus 146 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-l~-------------------~L~~L~Ls~n~l~~~~p~--~~~~l~~L 203 (325)
+|++|++.+.+|..+.++++|+.|++++|. +. +|++|++++|+++ .+|. .+.++++|
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L 575 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKL 575 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTC
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCC
Confidence 888888888888888888888888888775 32 6888888888888 7776 78888888
Q ss_pred CEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 204 DCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 204 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
+.|++++|.++ .+| .++.+++|+.|++++|.+.
T Consensus 576 ~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 576 GLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp CEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS
T ss_pred CEEECCCCCcc-cch-hhcCCCcceEEECcCCccc
Confidence 88888888887 666 6777777777777777765
No 8
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.8e-23 Score=189.85 Aligned_cols=194 Identities=23% Similarity=0.249 Sum_probs=136.1
Q ss_pred CCCCCccceeeEeCCC-CCeeEe------eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCc
Q 045233 45 YSSDHCKWIGITCNSA-GSIIGL------NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSK 117 (325)
Q Consensus 45 ~~~~~C~w~gv~c~~~-~~v~~l------~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~ 117 (325)
...+.|.|.++ |+-. .+++.+ +++.++++.|.+..++...+.++++|++|++ ++|.+.+..|..+.++++
T Consensus 25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVL--TSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTSCCCEECTTTTTTCTT
T ss_pred ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEEC--CCCccCccCHhhcCCCCC
Confidence 35678899887 6532 222222 4556667777777777667788888888888 777777777777778888
Q ss_pred CCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCch--hccCCCCCcEEEcCcC---------------------
Q 045233 118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS--TLARLTNLKYLDLKVT--------------------- 174 (325)
Q Consensus 118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~n--------------------- 174 (325)
|++|++++|.+++..+..+.++++|++|++++|+++. +|. .+..+++|++|++++|
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 8888888888875444457777778888888777773 443 5666777777776654
Q ss_pred ---------------------------------------CCCCCcEEEccCCcCCCC-----------------------
Q 045233 175 ---------------------------------------SMKNLTWLDISNNKIEGS----------------------- 192 (325)
Q Consensus 175 ---------------------------------------~l~~L~~L~Ls~n~l~~~----------------------- 192 (325)
.+++|+.|++++|.+++.
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 134555555666655542
Q ss_pred --------CchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 193 --------IPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 193 --------~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
+|+.+..+++|+.|++++|+++...+..+..+++|+.|++++|++.|...
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 24456778899999999999994433446899999999999999999765
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=2.2e-23 Score=196.85 Aligned_cols=194 Identities=21% Similarity=0.172 Sum_probs=127.4
Q ss_pred CCCcc--ceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCC
Q 045233 47 SDHCK--WIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQ 119 (325)
Q Consensus 47 ~~~C~--w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~ 119 (325)
.+.|. |..+.|...+ .-..-+++.++++.|.+..+....|.++++|++|++ ++|.+.+..|..|.++++|+
T Consensus 49 ~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 49 VCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL--GRNSIRQIEVGAFNGLASLN 126 (452)
T ss_dssp TSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECTTTTTTCTTCC
T ss_pred CCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEEC--CCCccCCcChhhccCcccCC
Confidence 34454 5688896432 111124556677777777777777888888888888 78888877777888888888
Q ss_pred EEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEc-------------------------CcC
Q 045233 120 LLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-------------------------KVT 174 (325)
Q Consensus 120 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l-------------------------~~n 174 (325)
+|+|++|.++...+..|.++++|++|+|++|+++...+..|..+++|+.|++ ++|
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 8888888888655566777888888888888777444434444444444444 333
Q ss_pred ---------CCCCCcEEEccCCcCCC------------------------CCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233 175 ---------SMKNLTWLDISNNKIEG------------------------SIPGELTELSRPDCLSLSANKLSGPVPFSN 221 (325)
Q Consensus 175 ---------~l~~L~~L~Ls~n~l~~------------------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 221 (325)
.+++|++|++++|++++ ..|..|.++++|+.|+|++|++++..+..+
T Consensus 207 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred cccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 12344444444444444 444455556666666666666665556666
Q ss_pred cCCCCCcEEEccCCCCCchHH
Q 045233 222 KQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 222 ~~l~~L~~L~l~~N~~~~~~~ 242 (325)
..+++|+.|++++|++.|...
T Consensus 287 ~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTCTTCCEEECCSSCEECSTT
T ss_pred ccccCCCEEEccCCCcCCCCC
Confidence 777778888888888777644
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=6.8e-23 Score=192.85 Aligned_cols=193 Identities=20% Similarity=0.183 Sum_probs=120.9
Q ss_pred CCcc--ceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCE
Q 045233 48 DHCK--WIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQL 120 (325)
Q Consensus 48 ~~C~--w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~ 120 (325)
+.|. +..|.|...+ .-..-+++.++++.|.+..+....|.++++|++|++ ++|.+.+..+..|.++++|++
T Consensus 39 C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 39 CSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQL--SRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp SEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEEC--CSSCCCEECGGGGTTCSSCCE
T ss_pred CEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEEC--CCCcCCccChhhccCCccCCE
Confidence 4453 5688996421 111123455666677777777667777777888887 777777766677777777777
Q ss_pred EecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEc-------------------------CcC-
Q 045233 121 LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDL-------------------------KVT- 174 (325)
Q Consensus 121 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l-------------------------~~n- 174 (325)
|++++|+++...+..|..+++|++|+|++|+++...+..|..+++|++|++ ++|
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 777777777555556777777777777777776444434444444444444 333
Q ss_pred --------CCCCCcEEEccCCcCCCC------------------------CchhhhCCCCCCEEECCCCcCCCCCCCccc
Q 045233 175 --------SMKNLTWLDISNNKIEGS------------------------IPGELTELSRPDCLSLSANKLSGPVPFSNK 222 (325)
Q Consensus 175 --------~l~~L~~L~Ls~n~l~~~------------------------~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 222 (325)
.+++|++|++++|++++. .+..|.++++|+.|+|++|++++..+..+.
T Consensus 197 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 123444555555544444 444455566666666666666666666667
Q ss_pred CCCCCcEEEccCCCCCchHH
Q 045233 223 QLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 223 ~l~~L~~L~l~~N~~~~~~~ 242 (325)
.+++|+.|++++|++.|...
T Consensus 277 ~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SCTTCCEEECCSSCEECSST
T ss_pred cccCCCEEEcCCCCccCCCC
Confidence 77778888888888776543
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=1.7e-22 Score=179.14 Aligned_cols=171 Identities=24% Similarity=0.239 Sum_probs=88.3
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-CCCCCchhhcCCcccceee
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-LSGTIPSNIGNLRNLVHLD 146 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~ 146 (325)
++.++++.|.+..++...+..+++|++|++ ++|.+.+..|..+..+++|++|++++|. +....|..+..+++|++|+
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWL--HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEEC--CCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 334444455555554444555555555555 4555554444455555555555555554 4433344444555555555
Q ss_pred cccCcCCCcCchhccCCCCCcEEEcC------------------------cC-----------CCCCCcEEEccCCcCCC
Q 045233 147 LGNNNLTGPIPSTLARLTNLKYLDLK------------------------VT-----------SMKNLTWLDISNNKIEG 191 (325)
Q Consensus 147 Ls~N~l~~~~p~~~~~l~~L~~L~l~------------------------~n-----------~l~~L~~L~Ls~n~l~~ 191 (325)
+++|++++..|..+..+++|++|+++ +| .+++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 55555544444444444455555544 44 23455555555555555
Q ss_pred CCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 192 SIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 192 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 5555555555555555555555544444455555666666666665554
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=2.3e-22 Score=178.27 Aligned_cols=146 Identities=23% Similarity=0.228 Sum_probs=123.6
Q ss_pred cccccCCcc-ccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 69 SWYDVDLNA-QAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 69 ~~l~~~~n~-~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
+.++++.|. +..+....+..+++|++|++ ++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHL--DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTTTCTTCCEEEC--TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEeCCCCCCccccCHHHhcCCcCCCEEEC--CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 344555564 55665566778888888888 888888877888888999999999999998766677889999999999
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGP 216 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 216 (325)
++|++++..+..+..+++|+.|++++| .+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 999999666667999999999999998 467999999999999987778899999999999999999853
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=3.9e-22 Score=178.53 Aligned_cols=193 Identities=22% Similarity=0.265 Sum_probs=100.3
Q ss_pred CCCCccceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCC-------------
Q 045233 46 SSDHCKWIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGS------------- 107 (325)
Q Consensus 46 ~~~~C~w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~------------- 107 (325)
..+.|.|.++.|+..+ .-..-+++.++++.|.+..++...+..+++|++|++ ++|.+...
T Consensus 3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSL--SSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC--CSSCCCEEEEEEHHHHSCSCC
T ss_pred CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEEC--CCCccCcccCccccccccccc
Confidence 3466899999997532 000113445555566666666555666666666666 55554421
Q ss_pred ------------Ccc-------------------------cccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233 108 ------------IPS-------------------------DISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150 (325)
Q Consensus 108 ------------~p~-------------------------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 150 (325)
+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 112 2333333333333333333333333444444444444444
Q ss_pred cCCC-cCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCC
Q 045233 151 NLTG-PIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP 218 (325)
Q Consensus 151 ~l~~-~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 218 (325)
.+++ ..|..+..+++|++|++++| .+++|++|++++|.+++..+..+..+++|+.|++++|++++..|
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 4443 23444444444555554444 23455566666666655545555556666666666666665556
Q ss_pred CcccCCC-CCcEEEccCCCCCch
Q 045233 219 FSNKQLS-TMYIVRLSPNKGLGS 240 (325)
Q Consensus 219 ~~~~~l~-~L~~L~l~~N~~~~~ 240 (325)
..+..++ +|+.|++++|++.|.
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEECS
T ss_pred HHHHhhhccCCEEEccCCCeecc
Confidence 5566653 666666666666654
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=3.9e-22 Score=200.14 Aligned_cols=166 Identities=35% Similarity=0.487 Sum_probs=123.6
Q ss_pred CCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCC
Q 045233 74 DLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT 153 (325)
Q Consensus 74 ~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 153 (325)
+.|.+.......+..+++|++|++ ++|.+.+.+|..+.++++|++|++++|++++.+|..++.+++|++|++++|+++
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L--~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLIL--DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEEC--CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCcccCcCCHHHcCCCCceEEEe--cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 334333333334556667777777 677777777777777777777777777777777777777777777777777777
Q ss_pred CcCchhccCCCCCcEEEcCcCC----------------------------------------------------------
Q 045233 154 GPIPSTLARLTNLKYLDLKVTS---------------------------------------------------------- 175 (325)
Q Consensus 154 ~~~p~~~~~l~~L~~L~l~~n~---------------------------------------------------------- 175 (325)
+.+|..+..+++|++|++++|.
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 7777777777777777777661
Q ss_pred -----------------------CCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEc
Q 045233 176 -----------------------MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRL 232 (325)
Q Consensus 176 -----------------------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 232 (325)
+++|+.||+++|+++|.+|..++.++.|+.|+|++|+++|.+|..++.+++|+.|++
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence 235778888888888888888888888888888888888888888888888888888
Q ss_pred cCCCCCchH
Q 045233 233 SPNKGLGSN 241 (325)
Q Consensus 233 ~~N~~~~~~ 241 (325)
++|++++..
T Consensus 688 s~N~l~g~i 696 (768)
T 3rgz_A 688 SSNKLDGRI 696 (768)
T ss_dssp CSSCCEECC
T ss_pred CCCcccCcC
Confidence 888887653
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.8e-21 Score=170.35 Aligned_cols=165 Identities=24% Similarity=0.246 Sum_probs=143.7
Q ss_pred ccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCc
Q 045233 72 DVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNN 151 (325)
Q Consensus 72 ~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 151 (325)
+++.+.+..++ .+..+++|++|++ ++|.+.+. +.+..+++|++|++++|.+++..+..+.++++|++|++++|+
T Consensus 47 ~l~~~~i~~~~--~l~~l~~L~~L~l--~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 47 IANNSDIKSVQ--GIQYLPNVRYLAL--GGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp ECTTSCCCCCT--TGGGCTTCCEEEC--TTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eeCCCCccccc--ccccCCCCcEEEC--CCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 34445555444 3778999999999 88888763 478899999999999999997777778999999999999999
Q ss_pred CCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCc
Q 045233 152 LTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220 (325)
Q Consensus 152 l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 220 (325)
+++..+..+..+++|++|++++| .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence 99777777899999999999988 4578999999999999888888899999999999999999988888
Q ss_pred ccCCCCCcEEEccCCCCCchHH
Q 045233 221 NKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 221 ~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
+..+++|+.|++++|++.|...
T Consensus 201 ~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTCTTCCEEECCSSCBCCCTT
T ss_pred HhCCcCCCEEEccCCCccccCc
Confidence 9999999999999999987643
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=3.9e-22 Score=180.65 Aligned_cols=171 Identities=20% Similarity=0.282 Sum_probs=153.1
Q ss_pred eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcC--------
Q 045233 67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGN-------- 138 (325)
Q Consensus 67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-------- 138 (325)
.|+.++++.|.+..++. .+..+++|++|++ ++|.+. .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 105 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L--s~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 105 HLQHMTIDAAGLMELPD-TMQQFAGLETLTL--ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp TCSEEEEESSCCCCCCS-CGGGGTTCSEEEE--ESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCEEECCCCCccchhH-HHhccCCCCEEEC--CCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 35556667777776653 5788999999999 889888 78999999999999999999988899987765
Q ss_pred -CcccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEE
Q 045233 139 -LRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLS 207 (325)
Q Consensus 139 -l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 207 (325)
+++|++|++++|+++ .+|..+..+++|++|++++| .+++|++|++++|++.+.+|..+..+++|+.|+
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 999999999999999 88999999999999999998 467899999999999999999999999999999
Q ss_pred CCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 208 LSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
+++|++.+.+|..+..+++|+.|++++|++.+..+
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 99999999999999999999999999999876433
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.9e-22 Score=181.53 Aligned_cols=187 Identities=24% Similarity=0.366 Sum_probs=164.9
Q ss_pred ccee--eEeC-CCCCeeE------eeccccccCCccccc--cCccccCCCCCCCEEEecccc-CcCCCCCcccccCCCcC
Q 045233 51 KWIG--ITCN-SAGSIIG------LNLSWYDVDLNAQAQ--LSQLNFSCFPNLESLRIQAYY-YGFTGSIPSDISALSKL 118 (325)
Q Consensus 51 ~w~g--v~c~-~~~~v~~------l~l~~l~~~~n~~~~--l~~~~~~~l~~L~~L~l~~~~-n~~~~~~p~~l~~l~~L 118 (325)
.|.. -.|. ....|+. -.+..++++.+.+.. .-...+..+++|++|++ ++ |.+.+.+|..+.++++|
T Consensus 26 ~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L--~~~n~l~~~~p~~l~~l~~L 103 (313)
T 1ogq_A 26 SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPAIAKLTQL 103 (313)
T ss_dssp TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEE--EEETTEESCCCGGGGGCTTC
T ss_pred CCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeC--CCCCcccccCChhHhcCCCC
Confidence 5743 2354 1345655 357789999999875 33346899999999999 74 89999999999999999
Q ss_pred CEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCC-----------CC-CCcEEEccC
Q 045233 119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS-----------MK-NLTWLDISN 186 (325)
Q Consensus 119 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~-~L~~L~Ls~ 186 (325)
++|++++|.+++.+|..|.++++|++|++++|++++.+|..+..+++|++|++++|. ++ +|++|++++
T Consensus 104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence 999999999999999999999999999999999999999999999999999999993 34 899999999
Q ss_pred CcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 187 NKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 187 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
|++++.+|..+..++ |+.|++++|.+++.+|..+..+++|+.|++++|.+.+.
T Consensus 184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 999999999999997 99999999999999999999999999999999998754
No 18
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.8e-21 Score=171.65 Aligned_cols=172 Identities=25% Similarity=0.294 Sum_probs=98.1
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchh------------
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSN------------ 135 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~------------ 135 (325)
++.++++.|.+..++...+.++++|++|++ ++|.+.+..+..+..+++|++|++++|.+++..+..
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEEC--CCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 334444445444444444555555555555 445444444444455555555555555554433344
Q ss_pred ------------hcCCcccceeecccCcCCCc-CchhccCCCCCcEEEcCcCCCC-----------CCc----EEEccCC
Q 045233 136 ------------IGNLRNLVHLDLGNNNLTGP-IPSTLARLTNLKYLDLKVTSMK-----------NLT----WLDISNN 187 (325)
Q Consensus 136 ------------~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~n~l~-----------~L~----~L~Ls~n 187 (325)
+..+++|++|++++|++++. +|..+..+++|++|++++|.+. +|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 44445555555555555432 3445555555555555555221 222 4555555
Q ss_pred cCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 188 KIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 188 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
.+++..+..+ ...+|+.|++++|++++..+..+..+++|+.|++++|++.|...
T Consensus 188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 5553333332 33478899999999997777778999999999999999998753
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=9.2e-21 Score=162.85 Aligned_cols=163 Identities=25% Similarity=0.223 Sum_probs=135.9
Q ss_pred CCCCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEec
Q 045233 44 NYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDL 123 (325)
Q Consensus 44 ~~~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~L 123 (325)
+.+.+.|.|.+|.|+..+ +..++ ..-.++|++|++ ++|.+.+..|..+..+++|++|++
T Consensus 13 ~~~~~~Cs~~~v~c~~~~----------------l~~ip---~~~~~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L 71 (229)
T 3e6j_A 13 CPSQCSCSGTTVDCRSKR----------------HASVP---AGIPTNAQILYL--HDNQITKLEPGVFDSLINLKELYL 71 (229)
T ss_dssp CCTTCEEETTEEECTTSC----------------CSSCC---SCCCTTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCEEeCCEeEccCCC----------------cCccC---CCCCCCCCEEEc--CCCccCccCHHHhhCccCCcEEEC
Confidence 456789999999996531 12222 222488999999 999999998999999999999999
Q ss_pred ccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCC
Q 045233 124 SLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRP 203 (325)
Q Consensus 124 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 203 (325)
++|.++...+..|..+++|++|+|++|++++..+..|..+++|+ +|++++|+++ .+|..+..+++|
T Consensus 72 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~-------------~L~Ls~N~l~-~lp~~~~~l~~L 137 (229)
T 3e6j_A 72 GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK-------------ELFMCCNKLT-ELPRGIERLTHL 137 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-------------EEECCSSCCC-SCCTTGGGCTTC
T ss_pred CCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC-------------eEeccCCccc-ccCcccccCCCC
Confidence 99999866667789999999999999999966666677666655 4566777777 678889999999
Q ss_pred CEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchH
Q 045233 204 DCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSN 241 (325)
Q Consensus 204 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~ 241 (325)
+.|++++|++++..+..+..+++|+.|++++|++.|..
T Consensus 138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999999999877788999999999999999999864
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=5e-21 Score=170.38 Aligned_cols=170 Identities=25% Similarity=0.192 Sum_probs=150.5
Q ss_pred eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233 67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD 146 (325)
Q Consensus 67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 146 (325)
+++.++++.|.+..+....+..+++|++|++ ++|.+.+..+ ...+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEEC--TTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEEC--CCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 4566777888888887778999999999999 8898876433 378999999999999999 7888899999999999
Q ss_pred cccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233 147 LGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 215 (325)
+++|++++..|..|..+++|++|++++| .+++|+.|++++|+++...+..+..+++|+.|++++|+++
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 9999999777788999999999999998 4578999999999999777777889999999999999999
Q ss_pred CCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 216 PVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 216 ~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
.+|..+....+|+.+++++|++.|...
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred ccChhhcccccCCeEEeCCCCccCcCc
Confidence 678888888999999999999998753
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=182.28 Aligned_cols=190 Identities=22% Similarity=0.254 Sum_probs=158.2
Q ss_pred CCCCc--cceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcC
Q 045233 46 SSDHC--KWIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKL 118 (325)
Q Consensus 46 ~~~~C--~w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L 118 (325)
..+.| .|..|.|...+ .-..-+++.++++.|.+..+....|..+++|++|++ ++|.+.+..|..|.++++|
T Consensus 5 ~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~i~~~~~~~~~~l~~L 82 (477)
T 2id5_A 5 PRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL--NENIVSAVEPGAFNNLFNL 82 (477)
T ss_dssp TTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC--TTSCCCEECTTTTTTCTTC
T ss_pred CCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEEC--CCCccCEeChhhhhCCccC
Confidence 34556 46789996432 111224566778888888888888999999999999 8999998889999999999
Q ss_pred CEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCC
Q 045233 119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNN 187 (325)
Q Consensus 119 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n 187 (325)
++|++++|.++...+..|.++++|++|+|++|++++..|..|..+++|++|++++| .+++|++|++++|
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 99999999999666667899999999999999999888889999999999999988 4678999999999
Q ss_pred cCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCC
Q 045233 188 KIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKG 237 (325)
Q Consensus 188 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~ 237 (325)
++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+.
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 99977777889999999999999998877777777777777777766543
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.1e-20 Score=170.86 Aligned_cols=189 Identities=23% Similarity=0.322 Sum_probs=140.3
Q ss_pred CCCccceeeEeCCCC--Ce---eEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEE
Q 045233 47 SDHCKWIGITCNSAG--SI---IGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLL 121 (325)
Q Consensus 47 ~~~C~w~gv~c~~~~--~v---~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L 121 (325)
.+.|.|+.+.|...+ .+ ..-+++.++++.|.+..++...+..+++|++|++ ++|.+.+..|..+..+++|++|
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL--INNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC--CSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEEC--CCCcCCeeCHHHhcCCCCCCEE
Confidence 456899999997432 11 1124566777888888888778999999999999 8899988888889999999999
Q ss_pred ecccCCCCCCCch----------------------hhcCCcccceeecccCcCCC--cCchhccCCCCCcEEEcCcCCC-
Q 045233 122 DLSLNRLSGTIPS----------------------NIGNLRNLVHLDLGNNNLTG--PIPSTLARLTNLKYLDLKVTSM- 176 (325)
Q Consensus 122 ~Ls~n~l~~~~p~----------------------~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~n~l- 176 (325)
++++|.++ .+|. .+.++++|++|++++|.++. ..+..+..+++|++|++++|.+
T Consensus 106 ~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp ECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99988876 3443 34455556666666665542 4455566666666666666632
Q ss_pred -------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 177 -------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 177 -------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 46778888888888777788888888888888888888777777888888888888888876
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=7.1e-21 Score=172.40 Aligned_cols=187 Identities=24% Similarity=0.289 Sum_probs=144.7
Q ss_pred CCCccceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEE
Q 045233 47 SDHCKWIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLL 121 (325)
Q Consensus 47 ~~~C~w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L 121 (325)
.+.|.|..+.|...+ ....-+++.++++.|.+..++...+.++++|++|++ ++|.+.+..|..+.++++|++|
T Consensus 30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVL--VNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECGGGSTTCTTCCEE
T ss_pred CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEEC--CCCccCccCHhHhhCcCCCCEE
Confidence 345899999996432 111124566777788888887778999999999999 8999998888899999999999
Q ss_pred ecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCC-------------------------
Q 045233 122 DLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM------------------------- 176 (325)
Q Consensus 122 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l------------------------- 176 (325)
++++|.++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l 184 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence 99999988 5665544 6788888888888755555677788888888777633
Q ss_pred --------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 177 --------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 177 --------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 185 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 185 TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 35777777777777766677888888888888888888777777888888888888888776
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=3.7e-21 Score=172.14 Aligned_cols=147 Identities=27% Similarity=0.322 Sum_probs=130.6
Q ss_pred ccccccCCccccccCc-cccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCC-CCchhhcCCccccee
Q 045233 68 LSWYDVDLNAQAQLSQ-LNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG-TIPSNIGNLRNLVHL 145 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~-~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L 145 (325)
|+.++++.|.+..++. ..+..+++|++|++ ++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|
T Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI--SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CCEEECTTSEEESSTTTTTTTTCTTCCEEEC--TTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCEEECCCCcccccccchhhhhccCCCEEEC--CCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 3445666777776665 46888999999999 8999998888899999999999999999986 578889999999999
Q ss_pred ecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCC-CCCEEECCCCcC
Q 045233 146 DLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELS-RPDCLSLSANKL 213 (325)
Q Consensus 146 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~N~l 213 (325)
++++|++++..|..+..+++|+.|++++| .+++|++|++++|++++..|..+..++ +|+.|++++|++
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 99999999888899999999999999998 457899999999999999999999985 999999999999
Q ss_pred CCC
Q 045233 214 SGP 216 (325)
Q Consensus 214 ~~~ 216 (325)
++.
T Consensus 261 ~~~ 263 (306)
T 2z66_A 261 ACT 263 (306)
T ss_dssp ECS
T ss_pred ecc
Confidence 854
No 25
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=2.1e-20 Score=159.64 Aligned_cols=164 Identities=23% Similarity=0.227 Sum_probs=135.4
Q ss_pred CCCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecc
Q 045233 45 YSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLS 124 (325)
Q Consensus 45 ~~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls 124 (325)
+..+.|.|..+.|... .+..++. .-.++|+.|++ ++|.+.+..+..+..+++|++|+++
T Consensus 6 P~~C~C~~~~v~c~~~----------------~l~~iP~---~l~~~l~~L~l--~~n~i~~i~~~~~~~l~~L~~L~Ls 64 (220)
T 2v9t_B 6 PAACTCSNNIVDCRGK----------------GLTEIPT---NLPETITEIRL--EQNTIKVIPPGAFSPYKKLRRIDLS 64 (220)
T ss_dssp CTTSEEETTEEECTTS----------------CCSSCCS---SCCTTCCEEEC--CSSCCCEECTTSSTTCTTCCEEECC
T ss_pred CCCCEECCCEEEcCCC----------------CcCcCCC---ccCcCCCEEEC--CCCcCCCcCHhHhhCCCCCCEEECC
Confidence 3456688888888542 2223322 11368999999 8999998888889999999999999
Q ss_pred cCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCC
Q 045233 125 LNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPD 204 (325)
Q Consensus 125 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 204 (325)
+|.+++..|..|.++++|++|+|++|+++...+..|..+++| ++|+|++|++++..|..|..+++|+
T Consensus 65 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L-------------~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 65 NNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL-------------QLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp SSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-------------CEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC-------------CEEECCCCCCCEeCHHHcCCCCCCC
Confidence 999998889999999999999999999995545556666554 5567778888888889999999999
Q ss_pred EEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 205 CLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
.|+|++|++++..+..+..+++|+.|++++|++.|...
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 99999999998888889999999999999999988654
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=7.6e-20 Score=160.88 Aligned_cols=184 Identities=21% Similarity=0.238 Sum_probs=157.1
Q ss_pred CCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC
Q 045233 47 SDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN 126 (325)
Q Consensus 47 ~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n 126 (325)
.++|.|.|+.|+-.+..+.++++ .+.+..++. .-.++++.|++ ++|.+.+..+..+.++++|++|++++|
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~-----~~~l~~ip~---~~~~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCS-----SKKLTAIPS---NIPADTKKLDL--QSNKLSSLPSKAFHRLTKLRLLYLNDN 71 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECT-----TSCCSSCCS---CCCTTCSEEEC--CSSCCSCCCTTSSSSCTTCCEEECCSS
T ss_pred CccCCCCCCCCEeCCCCCEEEcc-----CCCCCccCC---CCCCCCCEEEC--cCCCCCeeCHHHhcCCCCCCEEECCCC
Confidence 47899999999765555566665 444444443 22368999999 899999887788999999999999999
Q ss_pred CCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCch
Q 045233 127 RLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPG 195 (325)
Q Consensus 127 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~ 195 (325)
.++...+..|.++++|++|++++|++++..+..+..+++|++|++++| .+++|++|++++|.+++..+.
T Consensus 72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 999666666789999999999999999766778899999999999988 467899999999999977777
Q ss_pred hhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 196 ELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
.+..+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 799999999999999999988777899999999999999998753
No 27
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=8.8e-20 Score=154.12 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=130.8
Q ss_pred CCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEeccc
Q 045233 46 SSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSL 125 (325)
Q Consensus 46 ~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~ 125 (325)
..+.|.|.++.|+..+- ..+ +....++|++|++ ++|.+.+..+..+..+++|++|++++
T Consensus 3 ~~C~C~~~~v~c~~~~l----------------~~~---p~~~~~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~ 61 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQGR----------------TSV---PTGIPAQTTYLDL--ETNSLKSLPNGVFDELTSLTQLYLGG 61 (208)
T ss_dssp TTCEEETTEEECCSSCC----------------SSC---CSCCCTTCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCCEECCCEEEecCCCc----------------cCC---CCCCCCCCcEEEc--CCCccCcCChhhhcccccCcEEECCC
Confidence 45678999999965321 112 2233568999999 89999887777789999999999999
Q ss_pred CCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCE
Q 045233 126 NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDC 205 (325)
Q Consensus 126 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 205 (325)
|++++..+..|..+++|++|++++|++++..+..+..+++|+ +|++++|++++..+..+..+++|+.
T Consensus 62 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-------------~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK-------------ELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-------------EEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC-------------EEEcCCCcCcccCHhHhccCCcCCE
Confidence 999976666789999999999999999965555566665554 5566777888667777899999999
Q ss_pred EECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchH
Q 045233 206 LSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSN 241 (325)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~ 241 (325)
|++++|++++..+..+..+++|+.|++++|++.|..
T Consensus 129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred EECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 999999999877777899999999999999988754
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=2.9e-20 Score=175.14 Aligned_cols=126 Identities=22% Similarity=0.203 Sum_probs=102.7
Q ss_pred cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEcc
Q 045233 117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDIS 185 (325)
Q Consensus 117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls 185 (325)
+|++|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|++|++++| .+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 3444444444444445666777888888888888888777778888888888888887 46789999999
Q ss_pred CCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 186 NNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 186 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
+|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|...
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999998888899999999999999999997777778899999999999999988754
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=175.05 Aligned_cols=99 Identities=26% Similarity=0.380 Sum_probs=73.5
Q ss_pred CCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEE
Q 045233 114 ALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWL 182 (325)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L 182 (325)
++++|++|++++|.++ .+| .+..+++|++|+|++|++++..|..|..+++|+.|++++| .+++|++|
T Consensus 183 ~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp TCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred cccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 3444444444444444 222 2445566666777777777666777888888888888877 46789999
Q ss_pred EccCCcCCCCCchhhhCCCCCCEEECCCCcCC
Q 045233 183 DISNNKIEGSIPGELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 183 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 214 (325)
+|++|++++..+..+..+++|+.|+|++|++.
T Consensus 261 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 99999999888888999999999999999986
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.7e-20 Score=176.80 Aligned_cols=87 Identities=25% Similarity=0.392 Sum_probs=50.9
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchh--hcCCcccceeecccCcCCCcCchh-ccC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSN--IGNLRNLVHLDLGNNNLTGPIPST-LAR 162 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~-~~~ 162 (325)
|.++++|++|++ ++|.+.+..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|++++..|.. +.+
T Consensus 75 ~~~l~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 152 (455)
T 3v47_A 75 FRGLSSLIILKL--DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152 (455)
T ss_dssp TTTCTTCCEEEC--TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred ccccccCCEEeC--CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC
Confidence 455555555555 555555555555666666666666666665444433 556666666666666666555544 566
Q ss_pred CCCCcEEEcCcC
Q 045233 163 LTNLKYLDLKVT 174 (325)
Q Consensus 163 l~~L~~L~l~~n 174 (325)
+++|++|++++|
T Consensus 153 l~~L~~L~L~~n 164 (455)
T 3v47_A 153 MRRFHVLDLTFN 164 (455)
T ss_dssp CTTCCEEECTTC
T ss_pred CCcccEEeCCCC
Confidence 666666666555
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=6.8e-20 Score=178.84 Aligned_cols=169 Identities=21% Similarity=0.264 Sum_probs=119.6
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
|..++++.|.+..++...|..+++|++|++ ++|.+.+..|..++.+++|++|++++|.+++..+..|.++++|++|+|
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYM--GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEEC--CCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 344666677777766667888888888888 888888877777888888889999888888555555688888999999
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcCCC---------------------------------------------------
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVTSM--------------------------------------------------- 176 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n~l--------------------------------------------------- 176 (325)
++|.+++..|..|..+++|++|++++|.+
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L 234 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence 99988877777888888888888887722
Q ss_pred -------------------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCC
Q 045233 177 -------------------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKG 237 (325)
Q Consensus 177 -------------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~ 237 (325)
++|+.|++++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+
T Consensus 235 ~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence 234445555555555555555556666666666666553 344445566666666666666
Q ss_pred Cc
Q 045233 238 LG 239 (325)
Q Consensus 238 ~~ 239 (325)
..
T Consensus 314 ~~ 315 (597)
T 3oja_B 314 LH 315 (597)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.3e-20 Score=162.81 Aligned_cols=189 Identities=17% Similarity=0.179 Sum_probs=152.5
Q ss_pred CCCCccc-ee--eEeCCCCCe--eEeeccccccCCccccccCccccCCCCCCCEEEeccccCc-CCCCCcccccCCCcCC
Q 045233 46 SSDHCKW-IG--ITCNSAGSI--IGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYG-FTGSIPSDISALSKLQ 119 (325)
Q Consensus 46 ~~~~C~w-~g--v~c~~~~~v--~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~-~~~~~p~~l~~l~~L~ 119 (325)
..+.|.. .. |.|.....+ ..-+++.++++.|.+..++...+.++++|++|++ ++|. +.+..+..+.++++|+
T Consensus 6 ~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l--~~n~~l~~i~~~~f~~l~~L~ 83 (239)
T 2xwt_C 6 PPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYV--SIDVTLQQLESHSFYNLSKVT 83 (239)
T ss_dssp SSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEE--ECCSSCCEECTTTEESCTTCC
T ss_pred CCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeC--CCCCCcceeCHhHcCCCcCCc
Confidence 3455644 44 558642211 1225667778888888888888999999999999 8887 7766667899999999
Q ss_pred EEeccc-CCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCc---EEEcCcC------------CCCCCc-EE
Q 045233 120 LLDLSL-NRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLK---YLDLKVT------------SMKNLT-WL 182 (325)
Q Consensus 120 ~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~---~L~l~~n------------~l~~L~-~L 182 (325)
+|++++ |.++...+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| .+++|+ +|
T Consensus 84 ~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp EEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEE
Confidence 999999 99996666789999999999999999995 776 88888888 9999987 356888 99
Q ss_pred EccCCcCCCCCchhhhCCCCCCEEECCCCc-CCCCCCCcccCC-CCCcEEEccCCCCCc
Q 045233 183 DISNNKIEGSIPGELTELSRPDCLSLSANK-LSGPVPFSNKQL-STMYIVRLSPNKGLG 239 (325)
Q Consensus 183 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~l~~N~~~~ 239 (325)
++++|+++...+..+.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++|++..
T Consensus 162 ~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 162 KLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp ECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred EcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 99999999444444444 899999999995 987777888999 999999999998864
No 33
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=8.1e-20 Score=158.97 Aligned_cols=167 Identities=25% Similarity=0.320 Sum_probs=144.3
Q ss_pred CCc--cceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCE
Q 045233 48 DHC--KWIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQL 120 (325)
Q Consensus 48 ~~C--~w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~ 120 (325)
+.| .+..+.|...+ .-..-+++.++++.|.+..+....+.++++|++|++ ++|.+.+..+..+..+++|++
T Consensus 10 C~C~~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 10 CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNL--DYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp SEEEGGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC--TTSCCCCCCTTTTTTCTTCCE
T ss_pred eEcCCCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEEC--CCCcCCccCHhHhccCCcCCE
Confidence 456 56778886421 111124667778888888888888999999999999 899999988888999999999
Q ss_pred EecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcC
Q 045233 121 LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKI 189 (325)
Q Consensus 121 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l 189 (325)
|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++| .+++|++|++++|++
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 999999999777788899999999999999999766677899999999999998 457899999999999
Q ss_pred CCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233 190 EGSIPGELTELSRPDCLSLSANKLSGP 216 (325)
Q Consensus 190 ~~~~p~~~~~l~~L~~L~L~~N~l~~~ 216 (325)
++..+..+..+++|+.|++++|++++.
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 988888999999999999999999854
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=4.4e-21 Score=185.04 Aligned_cols=163 Identities=23% Similarity=0.288 Sum_probs=130.0
Q ss_pred CccceeeEeCCC-CCeeEe------eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEE
Q 045233 49 HCKWIGITCNSA-GSIIGL------NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLL 121 (325)
Q Consensus 49 ~C~w~gv~c~~~-~~v~~l------~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L 121 (325)
.|.|.|+ |+.. ..++.+ .++.++++.|.+..+....+.++++|++|++ ++|.+.+..|..+.++++|++|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL--KSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEEC--TTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEEC--CCCCcCccChhhccccccCCEE
Confidence 4788887 7532 122222 4666777788888877778999999999999 8999998888899999999999
Q ss_pred ecccCCCCCCCchhhcCCcccceeecccCcCCC-cCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCCc
Q 045233 122 DLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG-PIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNNK 188 (325)
Q Consensus 122 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~ 188 (325)
++++|.+++..|..|+++++|++|++++|++++ ..|..+.++++|++|++++| .+++|++|++++|+
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 999999998777779999999999999999986 35678999999999999887 35678999999999
Q ss_pred CCCCCchhhhCCCCCCEEECCCCcCC
Q 045233 189 IEGSIPGELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 189 l~~~~p~~~~~l~~L~~L~L~~N~l~ 214 (325)
+++..|..+..+++|+.|++++|.+.
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBST
T ss_pred ccccChhhhhccccCceEecccCccc
Confidence 99888877766555555555444443
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=5.4e-20 Score=173.62 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=66.1
Q ss_pred hcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCC
Q 045233 136 IGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPD 204 (325)
Q Consensus 136 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 204 (325)
+..+++|++|+|++|++++..|..|.++++|+.|++++| .+++|+.|+|++|++++..+..+..+++|+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 444556666677777777666778888888888888887 467999999999999988888889999999
Q ss_pred EEECCCCcCCC
Q 045233 205 CLSLSANKLSG 215 (325)
Q Consensus 205 ~L~L~~N~l~~ 215 (325)
.|++++|++..
T Consensus 294 ~L~L~~Np~~C 304 (452)
T 3zyi_A 294 ELHLHHNPWNC 304 (452)
T ss_dssp EEECCSSCEEC
T ss_pred EEEccCCCcCC
Confidence 99999999873
No 36
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=8.6e-20 Score=155.82 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=122.6
Q ss_pred CCCCCEEEeccccCcCCCCCc-ccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCc
Q 045233 89 FPNLESLRIQAYYYGFTGSIP-SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLK 167 (325)
Q Consensus 89 l~~L~~L~l~~~~n~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 167 (325)
.+.+++|++ ++|.+.+..| ..+..+++|++|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++|+
T Consensus 31 ~~~~~~L~L--~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 31 PQYTAELRL--NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108 (220)
T ss_dssp CTTCSEEEC--CSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred CCCCCEEEc--CCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence 346789999 8999988755 4588999999999999999977777899999999999999999977777787766654
Q ss_pred EEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHHH
Q 045233 168 YLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFI 243 (325)
Q Consensus 168 ~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~~ 243 (325)
+|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|++.|....
T Consensus 109 -------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 109 -------------TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp -------------EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred -------------EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 557778888888899999999999999999999998899999999999999999999987543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=1.3e-19 Score=167.51 Aligned_cols=104 Identities=20% Similarity=0.212 Sum_probs=80.3
Q ss_pred cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233 69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG 148 (325)
Q Consensus 69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 148 (325)
+.++++.|.+..++...+..+++|++|++ ++|.+.+..|..+.++++|++|++++|.++...+..|.++++|++|+++
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYM--GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEECCCCcccccChhhccCCCCcCEEEC--CCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 34556666666666666788888888888 7888887777778888888888888888884444446788888888888
Q ss_pred cCcCCCcCchhccCCCCCcEEEcCcC
Q 045233 149 NNNLTGPIPSTLARLTNLKYLDLKVT 174 (325)
Q Consensus 149 ~N~l~~~~p~~~~~l~~L~~L~l~~n 174 (325)
+|++++..|..+..+++|++|++++|
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred CCccCccChhhccCCCCCCEEECCCC
Confidence 88888766777888888888888776
No 38
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=3.9e-20 Score=166.20 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=131.2
Q ss_pred ccccccCCccccccCccc--------cCCCCCCCEEEeccccCcCCCCCcccc--cCCCcCCEEecccCCCCCCCchhhc
Q 045233 68 LSWYDVDLNAQAQLSQLN--------FSCFPNLESLRIQAYYYGFTGSIPSDI--SALSKLQLLDLSLNRLSGTIPSNIG 137 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~--------~~~l~~L~~L~l~~~~n~~~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~ 137 (325)
++.++++.|.+....-.. +.++++|++|++ ++|.+.+.+|..+ ..+++|++|++++|.+++. |..+.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~ 141 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL--ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLA 141 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEE--EEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEc--cCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHH
Confidence 556777777664432111 125889999999 8888988888876 8889999999999999866 77777
Q ss_pred CC-----cccceeecccCcCCCcCchhccCCCCCcEEEcCcCC---------------CCCCcEEEccCCcCCCC--C-c
Q 045233 138 NL-----RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS---------------MKNLTWLDISNNKIEGS--I-P 194 (325)
Q Consensus 138 ~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~---------------l~~L~~L~Ls~n~l~~~--~-p 194 (325)
.+ ++|++|++++|++++..|..+..+++|++|++++|. +++|++|++++|++++. + .
T Consensus 142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 76 889999999999987777888999999999998883 46888999999988832 2 2
Q ss_pred hhhhCCCCCCEEECCCCcCCCCCC-CcccCCCCCcEEEccCCCCC
Q 045233 195 GELTELSRPDCLSLSANKLSGPVP-FSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~N~~~ 238 (325)
..+..+++|+.|++++|++++.+| ..+..+++|+.|++++|.+.
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 345677889999999999887665 45566788889999988876
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=1.7e-19 Score=160.44 Aligned_cols=157 Identities=22% Similarity=0.206 Sum_probs=137.2
Q ss_pred CccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCC
Q 045233 75 LNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTG 154 (325)
Q Consensus 75 ~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 154 (325)
.+.+..++.. -.++++.|++ ++|.+.+..+..+..+++|++|++++|.+++ ++.. ..+++|++|++++|+++
T Consensus 19 ~~~l~~ip~~---~~~~l~~L~L--~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~- 90 (290)
T 1p9a_G 19 KRNLTALPPD---LPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ- 90 (290)
T ss_dssp TSCCSSCCSC---CCTTCCEEEC--TTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-
T ss_pred CCCCCcCCCC---CCCCCCEEEc--CCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-
Confidence 4444444432 2378999999 9999998888899999999999999999984 4443 78999999999999999
Q ss_pred cCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccC
Q 045233 155 PIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQ 223 (325)
Q Consensus 155 ~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 223 (325)
.+|..+..+++|++|++++| .+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 170 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence 78888999999999999998 4678999999999999888888899999999999999999777777899
Q ss_pred CCCCcEEEccCCCCCc
Q 045233 224 LSTMYIVRLSPNKGLG 239 (325)
Q Consensus 224 l~~L~~L~l~~N~~~~ 239 (325)
+++|+.|++++|++..
T Consensus 171 l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 171 LENLDTLLLQENSLYT 186 (290)
T ss_dssp CTTCCEEECCSSCCCC
T ss_pred cCCCCEEECCCCcCCc
Confidence 9999999999999874
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=5.7e-20 Score=179.36 Aligned_cols=170 Identities=21% Similarity=0.231 Sum_probs=146.9
Q ss_pred cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCc-ccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIP-SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
+.++++.|.+..++ ..+..+++|+.|++ ++|.+.+..| ..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 379 ~~L~L~~n~l~~~~-~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 379 RHLDLSFNGAIIMS-ANFMGLEELQHLDF--QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CEEECCSCSEEEEC-CCCTTCTTCCEEEC--TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred cEeECCCCccccch-hhccCCCCCCeeEC--CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 34455556555555 45788899999999 8888888877 67889999999999999999888899999999999999
Q ss_pred ccCcCCC-cCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233 148 GNNNLTG-PIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 148 s~N~l~~-~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 215 (325)
++|++++ .+|..+..+++|+.|++++| .+++|++|++++|++++..|..+..+++|+.|++++|+++
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~- 534 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE- 534 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-
Confidence 9999997 47888999999999999998 5678999999999999888999999999999999999999
Q ss_pred CCCCcccCCC-CCcEEEccCCCCCchHH
Q 045233 216 PVPFSNKQLS-TMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 216 ~~p~~~~~l~-~L~~L~l~~N~~~~~~~ 242 (325)
.+|..+..++ +|+.+++++|++.|...
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 5677788887 59999999999998654
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=6.3e-20 Score=161.63 Aligned_cols=161 Identities=22% Similarity=0.221 Sum_probs=137.3
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
|+.++++.|.+..++ .+..+++|++|++ ++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 65 L~~L~l~~n~l~~~~--~l~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 65 VRYLALGGNKLHDIS--ALKELTNLTYLIL--TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp CCEEECTTSCCCCCG--GGTTCTTCCEEEC--TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEECCCCCCCCch--hhcCCCCCCEEEC--CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 334455566665553 5889999999999 899999888888999999999999999999777777899999999999
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGP 216 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 216 (325)
++|++++..+..+..+++|+.|++++| .+++|++|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 999999777777899999999999998 467899999999999988888899999999999999998854
Q ss_pred CCCcccCCCCCcEEEccCCCCCc
Q 045233 217 VPFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 217 ~p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
+++++.+++..|.+.+
T Consensus 221 -------~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 221 -------CPGIRYLSEWINKHSG 236 (272)
T ss_dssp -------TTTTHHHHHHHHHTGG
T ss_pred -------CcHHHHHHHHHHhCCC
Confidence 4466777776666554
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=4.2e-19 Score=170.15 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=139.1
Q ss_pred CCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCC--CCchhhcCCcccceeecccCcCCCcCch-hccCC
Q 045233 87 SCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG--TIPSNIGNLRNLVHLDLGNNNLTGPIPS-TLARL 163 (325)
Q Consensus 87 ~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l 163 (325)
..+++|++|++ ++|.+.+..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+
T Consensus 321 ~~l~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDF--SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEEC--CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred hhCCcccEEEe--ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 68999999999 9999999999999999999999999999996 5678899999999999999999975775 48899
Q ss_pred CCCcEEEcCcCCC---------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccC
Q 045233 164 TNLKYLDLKVTSM---------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSP 234 (325)
Q Consensus 164 ~~L~~L~l~~n~l---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 234 (325)
++|++|++++|.+ ++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.+++++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 9999999999965 69999999999999 7888888999999999999999954334489999999999999
Q ss_pred CCCCchHHH
Q 045233 235 NKGLGSNFI 243 (325)
Q Consensus 235 N~~~~~~~~ 243 (325)
|++.|....
T Consensus 478 N~~~c~c~~ 486 (520)
T 2z7x_B 478 NPWDCSCPR 486 (520)
T ss_dssp SCBCCCHHH
T ss_pred CCCcccCCc
Confidence 999997654
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=1.2e-19 Score=177.15 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=137.4
Q ss_pred ceeeEeCCCC-----CeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC
Q 045233 52 WIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN 126 (325)
Q Consensus 52 w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n 126 (325)
+..+.|...+ .-..-+++.++++.|.+..+....|.++++|++|++ ++|.+.+..|..|.++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL--TRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEEC--TTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEEC--CCCccceeChhhccCccccCeeeCCCC
Confidence 4567886431 111124566777888888888888999999999999 899999988999999999999999999
Q ss_pred CCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCch
Q 045233 127 RLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPG 195 (325)
Q Consensus 127 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~ 195 (325)
.+++..|..|.++++|++|++++|++++..|..+.++++|++|++++| .+++|++|++++|.+++..|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 999888999999999999999999999766788999999999999988 346789999999999988888
Q ss_pred hhhCCCCCC--EEECCCCcCCCCCC
Q 045233 196 ELTELSRPD--CLSLSANKLSGPVP 218 (325)
Q Consensus 196 ~~~~l~~L~--~L~L~~N~l~~~~p 218 (325)
.+..+++|+ .|++++|.+++..|
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECT
T ss_pred hhhhhcccceeEEecCCCccCccCh
Confidence 888888888 77777777665443
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=1.3e-19 Score=176.82 Aligned_cols=171 Identities=24% Similarity=0.253 Sum_probs=129.7
Q ss_pred cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCccc-ccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSD-ISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
+.++++.|.+..+....+..+++|+.|++ ++|.+.+..|.. +..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDL--AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEEC--TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEEC--CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 34445556655555556777788888888 777777665544 777788888888888887777777788888888888
Q ss_pred ccCcCCCc---CchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcC
Q 045233 148 GNNNLTGP---IPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKL 213 (325)
Q Consensus 148 s~N~l~~~---~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l 213 (325)
++|++++. .+..+..+++|++|++++| .+++|++|++++|++++..|..+..++.| .|++++|++
T Consensus 457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence 88887752 2356777888888888877 45678888888888888888888888888 888888888
Q ss_pred CCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 214 SGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 214 ~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
++.+|..+..+++|+.+++++|++.|...
T Consensus 536 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 536 SIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 87777778888888888888888887544
No 45
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.2e-19 Score=164.67 Aligned_cols=151 Identities=23% Similarity=0.111 Sum_probs=101.3
Q ss_pred CCCEEEeccccCcCCCCCccccc-CCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEE
Q 045233 91 NLESLRIQAYYYGFTGSIPSDIS-ALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169 (325)
Q Consensus 91 ~L~~L~l~~~~n~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 169 (325)
.++.|++ ++|.+.+..+..+. .+++|++|+|++|++++..+..|.++++|++|+|++|+++...+..|..+++|++|
T Consensus 40 ~l~~L~L--s~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDL--SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEEC--CSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEEC--CCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 4556666 55555555555454 56666666666666654444555666666666666666654444455566666666
Q ss_pred EcCcC-----------CCCCCcEEEccCCcCCCCCchhh---hCCCCCCEEECCCCcCCCCCCCcccCCCC--CcEEEcc
Q 045233 170 DLKVT-----------SMKNLTWLDISNNKIEGSIPGEL---TELSRPDCLSLSANKLSGPVPFSNKQLST--MYIVRLS 233 (325)
Q Consensus 170 ~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~l~ 233 (325)
++++| .+++|+.|+|++|++++..+..+ ..+++|+.|+|++|+|++..+..+..++. ++.|+++
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 66655 34567778888888886555555 57999999999999999766677888887 4889999
Q ss_pred CCCCCchHHH
Q 045233 234 PNKGLGSNFI 243 (325)
Q Consensus 234 ~N~~~~~~~~ 243 (325)
+|++.|....
T Consensus 198 ~N~~~C~C~l 207 (361)
T 2xot_A 198 NNPLECDCKL 207 (361)
T ss_dssp SSCEECCHHH
T ss_pred CCCccCCcCc
Confidence 9999987654
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.1e-19 Score=173.17 Aligned_cols=126 Identities=21% Similarity=0.139 Sum_probs=110.4
Q ss_pred CCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhcc-CCCCCcEEEcCcC---------CCCCCcEEEc
Q 045233 115 LSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLA-RLTNLKYLDLKVT---------SMKNLTWLDI 184 (325)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~~n---------~l~~L~~L~L 184 (325)
+++|++|++++|.+++..|..++++++|++|+|++|.+++..|..+. .+++|+.|++++| .+++|+.|+|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 198 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEEC
Confidence 46677778888888877788889999999999999999988888876 7999999999999 4679999999
Q ss_pred cCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 185 SNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 185 s~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.+++++|++.|...
T Consensus 199 s~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 199 SSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred CCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence 9999996555 58999999999999999995 67778999999999999999997643
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=1.2e-19 Score=177.01 Aligned_cols=171 Identities=20% Similarity=0.199 Sum_probs=148.3
Q ss_pred eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233 67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD 146 (325)
Q Consensus 67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 146 (325)
+++.++++.|.+..+....|.++++|++|++ ++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDL--SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeC--CCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 4556677788888888888999999999999 89999988888999999999999999999988899999999999999
Q ss_pred cccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCCcCCCCCchhhhCCCCCC----EEECCC
Q 045233 147 LGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNNKIEGSIPGELTELSRPD----CLSLSA 210 (325)
Q Consensus 147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~L~~ 210 (325)
+++|++++..|..++++++|++|++++| ++++|++|++++|++++..|..+..+++|+ .+++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 9999999777788999999999999988 457899999999999988888777766554 899999
Q ss_pred CcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 211 NKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 211 N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
|++++..+..+... +|+.|++++|.+.+.
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~ 219 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSN 219 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHH
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchh
Confidence 99996666555544 899999999988753
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=170.25 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=58.4
Q ss_pred ccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCc
Q 045233 160 LARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMY 228 (325)
Q Consensus 160 ~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 228 (325)
+..+++|+.|++++| .+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 444555555555555 345666777777777766677777778888888888888766666777788888
Q ss_pred EEEccCCCCCchHH
Q 045233 229 IVRLSPNKGLGSNF 242 (325)
Q Consensus 229 ~L~l~~N~~~~~~~ 242 (325)
.|++++|++.|...
T Consensus 324 ~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 324 TLILDSNPLACDCR 337 (477)
T ss_dssp EEECCSSCEECSGG
T ss_pred EEEccCCCccCccc
Confidence 88888888877643
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=9.7e-20 Score=163.63 Aligned_cols=167 Identities=20% Similarity=0.204 Sum_probs=139.1
Q ss_pred ccccccCCccccccCcccc--CCCCCCCEEEeccccCcCCCCCcccccCC-----CcCCEEecccCCCCCCCchhhcCCc
Q 045233 68 LSWYDVDLNAQAQLSQLNF--SCFPNLESLRIQAYYYGFTGSIPSDISAL-----SKLQLLDLSLNRLSGTIPSNIGNLR 140 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~--~~l~~L~~L~l~~~~n~~~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~~~~l~ 140 (325)
|+.++++.|.+.......+ ..+++|++|++ ++|.+.+. |..+..+ ++|++|++++|++++..|..|+.++
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L--s~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNL--RNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEE--ESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEc--cCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 3345556666653322233 88999999999 89999987 7777776 9999999999999988889999999
Q ss_pred ccceeecccCcCCCc--Cchhc--cCCCCCcEEEcCcCC--------------CCCCcEEEccCCcCCCCCc-hhhhCCC
Q 045233 141 NLVHLDLGNNNLTGP--IPSTL--ARLTNLKYLDLKVTS--------------MKNLTWLDISNNKIEGSIP-GELTELS 201 (325)
Q Consensus 141 ~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~l~~n~--------------l~~L~~L~Ls~n~l~~~~p-~~~~~l~ 201 (325)
+|++|++++|++.+. .|..+ ..+++|++|++++|. +++|++|++++|++++..| ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 999999999998865 34455 889999999999993 4699999999999998775 4567789
Q ss_pred CCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 202 RPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 202 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
+|+.|++++|+++ .+|..+. ++|+.|++++|++.+.
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence 9999999999999 7777666 8999999999998763
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=6.6e-19 Score=174.16 Aligned_cols=189 Identities=23% Similarity=0.237 Sum_probs=158.9
Q ss_pred CccceeeEeCCC-----CCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEec
Q 045233 49 HCKWIGITCNSA-----GSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDL 123 (325)
Q Consensus 49 ~C~w~gv~c~~~-----~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~L 123 (325)
.|.+..+.|... +.-..-+++.++++.|.+..++...|.++++|++|++ ++|.+.+..|..+.++++|++|++
T Consensus 3 ~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 3 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV--GFNTISKLEPELCQKLPMLKVLNL 80 (680)
T ss_dssp -CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEEC--CSSCCCCCCTTHHHHCTTCCEEEC
T ss_pred eeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEEC--CCCccCccCHHHHhcccCcCEEEC
Confidence 355566777532 1111124566777788888888888999999999999 899999999999999999999999
Q ss_pred ccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCC
Q 045233 124 SLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGS 192 (325)
Q Consensus 124 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~ 192 (325)
++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|++++| .+++|++|++++|.+++.
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 999999655557999999999999999999777788999999999999998 467899999999999988
Q ss_pred Cchhhh--CCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233 193 IPGELT--ELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 193 ~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
.+..+. .+++|+.|++++|.+++..|..+..+++|+.+++.+|.+..
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 209 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHH
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccCh
Confidence 877665 56899999999999999889889888888888888877653
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=1.4e-19 Score=162.91 Aligned_cols=167 Identities=18% Similarity=0.117 Sum_probs=128.7
Q ss_pred ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcc----------------cccCCCcCCEEecccCCCCCCCc
Q 045233 70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPS----------------DISALSKLQLLDLSLNRLSGTIP 133 (325)
Q Consensus 70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~----------------~l~~l~~L~~L~Ls~n~l~~~~p 133 (325)
.++++.|.+..+.. +..+++|++|++ ++|.+.+..+. ....+++|++|++++|.+++..+
T Consensus 62 ~L~Ls~n~l~~~~~--~~~l~~L~~L~L--s~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 62 LLNLSSNVLYETLD--LESLSTLRTLDL--NNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp EEECTTSCCEEEEE--ETTCTTCCEEEC--CSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG
T ss_pred EEECCCCcCCcchh--hhhcCCCCEEEC--cCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccc
Confidence 34444555444332 677788888888 66665532110 01234567777777787876666
Q ss_pred hhhcCCcccceeecccCcCCCcCchhc-cCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCC
Q 045233 134 SNIGNLRNLVHLDLGNNNLTGPIPSTL-ARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRP 203 (325)
Q Consensus 134 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 203 (325)
..+..+++|++|++++|++++..|..+ ..+++|++|++++| .+++|++|++++|++++. |..+..+++|
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L 216 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGV 216 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc-hhhhcccCcc
Confidence 778889999999999999997777766 47899999999998 368999999999999955 5568999999
Q ss_pred CEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 204 DCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 204 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
+.|++++|+++ .+|..+..+++|+.|++++|++.|...
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH
Confidence 99999999999 567788999999999999999996543
No 52
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=1.9e-18 Score=167.43 Aligned_cols=172 Identities=23% Similarity=0.210 Sum_probs=144.5
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCC--CCchhhcCCccccee
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSG--TIPSNIGNLRNLVHL 145 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L 145 (325)
++.++++.+.+..+. ....+++|++|++ ++|.+.+..|..+.++++|++|++++|++++ .+|..+.++++|++|
T Consensus 333 L~~L~l~~n~~~~~~--~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 333 IKMLSISDTPFIHMV--CPPSPSSFTFLNF--TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CSEEEEESSCCCCCC--CCSSCCCCCEEEC--CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred ceEEEccCCCccccc--CccCCCCceEEEC--CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 334444445443322 1268899999999 9999999999999999999999999999995 345678999999999
Q ss_pred ecccCcCCCcCch-hccCCCCCcEEEcCcCCC---------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233 146 DLGNNNLTGPIPS-TLARLTNLKYLDLKVTSM---------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 146 ~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~n~l---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 215 (325)
++++|++++.+|. .+..+++|++|++++|.+ ++|++|++++|+++ .+|..+..+++|+.|++++|++++
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC
Confidence 9999999975665 588999999999999965 69999999999999 678777799999999999999995
Q ss_pred CCCCcccCCCCCcEEEccCCCCCchHHHH
Q 045233 216 PVPFSNKQLSTMYIVRLSPNKGLGSNFII 244 (325)
Q Consensus 216 ~~p~~~~~l~~L~~L~l~~N~~~~~~~~~ 244 (325)
..+..+..+++|+.+++++|++.|.....
T Consensus 488 l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 488 VPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred CCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 44444899999999999999999976543
No 53
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=1.3e-18 Score=160.78 Aligned_cols=170 Identities=23% Similarity=0.243 Sum_probs=127.2
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
|+.++++.|.+..++...+..+++|++|++ ++|.+....+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 95 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVL--ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred cCEEECCCCCCCcCCHHHhcCCCCCCEEEC--CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 334566677777777777899999999999 889888655555789999999999999999777888999999999999
Q ss_pred ccCcCCCcCchhccCC-------------------------------------CCCcEEEcCcC---------CCCCCcE
Q 045233 148 GNNNLTGPIPSTLARL-------------------------------------TNLKYLDLKVT---------SMKNLTW 181 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l-------------------------------------~~L~~L~l~~n---------~l~~L~~ 181 (325)
++|++++.....+..+ ++|+.|++++| .+++|++
T Consensus 173 ~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~ 252 (390)
T 3o6n_A 173 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE 252 (390)
T ss_dssp CSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred CCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccE
Confidence 9999985432222222 13344444443 3457777
Q ss_pred EEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 182 LDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 182 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
|++++|.+++..|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|++...
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~ 310 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV 310 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec
Confidence 8888888777777778888888888888888874 455556778888888888877643
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=173.66 Aligned_cols=171 Identities=22% Similarity=0.251 Sum_probs=143.1
Q ss_pred ccccCCccccccC--ccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCc-hhhcCCcccceee
Q 045233 70 WYDVDLNAQAQLS--QLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIP-SNIGNLRNLVHLD 146 (325)
Q Consensus 70 ~l~~~~n~~~~l~--~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ 146 (325)
.++++.|.+.... ...+..+++|++|++ ++|.+.+..+ .+..+++|++|++++|.+.+..| ..+..+++|++|+
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l--~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDL--SFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEEC--CSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred EEeCcCCccCccccccccccccCccCEEEC--CCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 3444455444333 234667788888888 7777776444 48889999999999999886655 4688999999999
Q ss_pred cccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCC
Q 045233 147 LGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 214 (325)
+++|++++..|..+..+++|++|++++| .+++|++|++++|++++..|..+..+++|+.|++++|+++
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 9999999888889999999999999988 4678999999999999888999999999999999999999
Q ss_pred CCCCCcccCCCCCcEEEccCCCCCchHHH
Q 045233 215 GPVPFSNKQLSTMYIVRLSPNKGLGSNFI 243 (325)
Q Consensus 215 ~~~p~~~~~l~~L~~L~l~~N~~~~~~~~ 243 (325)
+.+|..+..+++|+.+++++|++.|....
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 88888899999999999999999987543
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=179.51 Aligned_cols=183 Identities=22% Similarity=0.225 Sum_probs=155.6
Q ss_pred ccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCC-cccccCCCcCCEEecccCCC
Q 045233 50 CKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSI-PSDISALSKLQLLDLSLNRL 128 (325)
Q Consensus 50 C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~-p~~l~~l~~L~~L~Ls~n~l 128 (325)
|.|..|.+ -...++.+++ +.|.+..+....|.++++|++|++ ++|...+.+ |..|.++++|++|+|++|.+
T Consensus 14 ~~L~~vP~-lp~~l~~LdL-----s~N~i~~i~~~~~~~l~~L~~LdL--s~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLL-----SFNYIRTVTASSFPFLEQLQLLEL--GSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEE-----ESCCCCEECSSSCSSCCSCSEEEE--CTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred CCCCCCCC-CCCCcCEEEC-----CCCcCCccChhHCcccccCeEEeC--CCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 34555555 3344555554 567777777778999999999999 888666655 77899999999999999999
Q ss_pred CCCCchhhcCCcccceeecccCcCCCcCchh--ccCCCCCcEEEcCcC------------CCCCCcEEEccCCcCCCCCc
Q 045233 129 SGTIPSNIGNLRNLVHLDLGNNNLTGPIPST--LARLTNLKYLDLKVT------------SMKNLTWLDISNNKIEGSIP 194 (325)
Q Consensus 129 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~p 194 (325)
++..|..|.++++|++|+|++|++++.+|.. +.++++|++|++++| ++++|++|++++|.+++..|
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 9888999999999999999999999877765 999999999999988 46789999999999999999
Q ss_pred hhhhCC--CCCCEEECCCCcCCCCCCCcccCCCC------CcEEEccCCCCCch
Q 045233 195 GELTEL--SRPDCLSLSANKLSGPVPFSNKQLST------MYIVRLSPNKGLGS 240 (325)
Q Consensus 195 ~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~------L~~L~l~~N~~~~~ 240 (325)
..+..+ ++|+.|++++|.+++..|..++.+++ |+.|++++|.+.+.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 219 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchh
Confidence 998887 89999999999999988887777665 99999999987653
No 56
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=160.47 Aligned_cols=146 Identities=20% Similarity=0.133 Sum_probs=76.6
Q ss_pred CCCCEEEeccccCcCCCCCcccc--cCCCcCCEEecccCCCCCCCc----hhhcCCcccceeecccCcCCCcCchhccCC
Q 045233 90 PNLESLRIQAYYYGFTGSIPSDI--SALSKLQLLDLSLNRLSGTIP----SNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163 (325)
Q Consensus 90 ~~L~~L~l~~~~n~~~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 163 (325)
++|++|++ ++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..|..+..+
T Consensus 91 ~~L~~L~l--~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTL--EDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEE--ESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEe--eCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 44555555 5555555555554 555555555555555554333 223345555555555555554445555555
Q ss_pred CCCcEEEcCcCC---------------CCCCcEEEccCCcCCCCCch----hhhCCCCCCEEECCCCcCCCCCCCcccCC
Q 045233 164 TNLKYLDLKVTS---------------MKNLTWLDISNNKIEGSIPG----ELTELSRPDCLSLSANKLSGPVPFSNKQL 224 (325)
Q Consensus 164 ~~L~~L~l~~n~---------------l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 224 (325)
++|++|++++|. +++|++|++++|+++ .++. .+..+++|++|++++|.+++..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 555555555552 334555555555554 2222 13445555555555555555444444443
Q ss_pred ---CCCcEEEccCCCCC
Q 045233 225 ---STMYIVRLSPNKGL 238 (325)
Q Consensus 225 ---~~L~~L~l~~N~~~ 238 (325)
++|+.|++++|.+.
T Consensus 248 ~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCTTCCCEECCSSCCC
T ss_pred cCcCcCCEEECCCCCCC
Confidence 35555555555554
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=3.4e-19 Score=174.07 Aligned_cols=169 Identities=24% Similarity=0.230 Sum_probs=140.3
Q ss_pred eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233 67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD 146 (325)
Q Consensus 67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 146 (325)
+++.++++.|.+..++...|.++++|++|++ ++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L--s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC--CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 5667888899999999889999999999999 89999988888899999999999999999976667899999999999
Q ss_pred cccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCCcCCCCCchhhhCCCCC----CEEECCC
Q 045233 147 LGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNNKIEGSIPGELTELSRP----DCLSLSA 210 (325)
Q Consensus 147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L----~~L~L~~ 210 (325)
|++|++++..+..|+++++|++|++++| .+++|++|++++|++++..|..+..+.++ ..++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 9999999766677999999999999988 35688999999999988888777665443 4788888
Q ss_pred CcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 211 NKLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 211 N~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
|.++...+.. .....+..+++.+|...
T Consensus 211 n~l~~i~~~~-~~~~~~~~l~l~~n~~~ 237 (635)
T 4g8a_A 211 NPMNFIQPGA-FKEIRLHKLTLRNNFDS 237 (635)
T ss_dssp CCCCEECTTT-TTTCEEEEEEEESCCSS
T ss_pred CcccccCccc-ccchhhhhhhhhccccc
Confidence 8888554444 34445677888888654
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=7.6e-19 Score=173.73 Aligned_cols=173 Identities=23% Similarity=0.259 Sum_probs=148.1
Q ss_pred ccccccCCcccc-ccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCC--CCCchhhcCCcccce
Q 045233 68 LSWYDVDLNAQA-QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLS--GTIPSNIGNLRNLVH 144 (325)
Q Consensus 68 l~~l~~~~n~~~-~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~ 144 (325)
|+.++++.|.+. .++...+.++++|++|++ ++|.+.+..+..+..+++|++|++++|.+. +..|..+.++++|++
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYL--SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEEC--CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEec--CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 455667777765 355567889999999999 899998888888999999999999999987 578888999999999
Q ss_pred eecccCcCCCcCchhccCCCCCcEEEcCcCC-------------------CCCCcEEEccCCcCCCCCchhhhCCCCCCE
Q 045233 145 LDLGNNNLTGPIPSTLARLTNLKYLDLKVTS-------------------MKNLTWLDISNNKIEGSIPGELTELSRPDC 205 (325)
Q Consensus 145 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-------------------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 205 (325)
|++++|++++..|..+..+++|++|++++|. +++|++|++++|+++...+..|.++++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 9999999997777789999999999999883 357899999999999555567899999999
Q ss_pred EECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 206 LSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
|++++|++++..+..+..+++|+.|++++|++++...
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 9999999997777778899999999999999887554
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=8.8e-19 Score=169.68 Aligned_cols=103 Identities=25% Similarity=0.309 Sum_probs=86.9
Q ss_pred eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233 67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD 146 (325)
Q Consensus 67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 146 (325)
+++.++++.|.+..++...|.++++|++|++ ++|.+.+..|..|.++++|++|++++|.++ .+|.. .+++|++|+
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRL--SHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEEC--CSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEEC--CCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 4556677788888888778999999999999 899999888888999999999999999998 66665 788999999
Q ss_pred cccCcCCC-cCchhccCCCCCcEEEcCcC
Q 045233 147 LGNNNLTG-PIPSTLARLTNLKYLDLKVT 174 (325)
Q Consensus 147 Ls~N~l~~-~~p~~~~~l~~L~~L~l~~n 174 (325)
+++|++++ ..|..|.++++|++|++++|
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCC
Confidence 99999885 34578888888888888877
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.4e-18 Score=169.57 Aligned_cols=167 Identities=23% Similarity=0.178 Sum_probs=142.3
Q ss_pred ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeeccc
Q 045233 70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN 149 (325)
Q Consensus 70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 149 (325)
.++++.|.+..++...|+++++|++|++ ++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 103 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVL--ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcCCCCCHHHHcCCCCCCEEEe--eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC
Confidence 4566777777777777899999999999 88988876666678999999999999999988888899999999999999
Q ss_pred CcCCCcC-----------------------------------------------------------chhccCCCCCcEEE
Q 045233 150 NNLTGPI-----------------------------------------------------------PSTLARLTNLKYLD 170 (325)
Q Consensus 150 N~l~~~~-----------------------------------------------------------p~~~~~l~~L~~L~ 170 (325)
|.+++.. +..+..+++|+.|+
T Consensus 181 N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~ 260 (597)
T 3oja_B 181 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVD 260 (597)
T ss_dssp SCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred CCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEE
Confidence 8887432 12366778999999
Q ss_pred cCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233 171 LKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 171 l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
+++| .+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++..
T Consensus 261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 9998 56899999999999995 5777788999999999999999 678788999999999999999875
Q ss_pred h
Q 045233 240 S 240 (325)
Q Consensus 240 ~ 240 (325)
.
T Consensus 339 ~ 339 (597)
T 3oja_B 339 L 339 (597)
T ss_dssp C
T ss_pred c
Confidence 4
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=7.1e-19 Score=169.53 Aligned_cols=165 Identities=22% Similarity=0.188 Sum_probs=109.7
Q ss_pred CCccccccCccccCCCCCCCEEEeccccCcCCCCCcc---cccCCCcCCEEecccCCCCCCCc--hhhcCCcccceeecc
Q 045233 74 DLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPS---DISALSKLQLLDLSLNRLSGTIP--SNIGNLRNLVHLDLG 148 (325)
Q Consensus 74 ~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls 148 (325)
+.|.+..++...+..+++|++|++ ++|.+.+..|. .+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 318 ~~n~l~~ip~~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 318 ENSKVFLVPCSFSQHLKSLEFLDL--SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp ESSCCCCCCHHHHHHCTTCCEEEC--CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred ccCccccCCHHHHhcCccccEEEc--cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence 334444444333345666666666 56666554432 24555666666666666653221 335556666666666
Q ss_pred cCcCCCcCchhccCCCCCcEEEcCcC----------------------------CCCCCcEEEccCCcCCCCCchhhhCC
Q 045233 149 NNNLTGPIPSTLARLTNLKYLDLKVT----------------------------SMKNLTWLDISNNKIEGSIPGELTEL 200 (325)
Q Consensus 149 ~N~l~~~~p~~~~~l~~L~~L~l~~n----------------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l 200 (325)
+|+++ .+|..+..+++|++|++++| .+++|++|++++|+++ .+|. ...+
T Consensus 396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l 472 (549)
T 2z81_A 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLF 472 (549)
T ss_dssp TCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred CCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccC
Confidence 66665 45555555555555555444 3567888888888888 5665 4678
Q ss_pred CCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHHH
Q 045233 201 SRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFI 243 (325)
Q Consensus 201 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~~ 243 (325)
++|+.|++++|++++.+|..+..+++|+.+++++|++.|....
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 9999999999999998888899999999999999999997653
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=2.2e-18 Score=155.93 Aligned_cols=167 Identities=26% Similarity=0.292 Sum_probs=124.9
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
|+.++++.|.+..+....+..+++|++|++ ++|.+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++
T Consensus 80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYI--SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp CCEEECCSSCCCEECGGGSTTCTTCCEEEC--CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CcEEECCCCccCccCHhHhhCcCCCCEEEC--CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 344556666666666666788888888888 777766 3444433 66777777777777555555666777777777
Q ss_pred ccCcCCC--cCchhccCC--------------------CCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCc
Q 045233 148 GNNNLTG--PIPSTLARL--------------------TNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIP 194 (325)
Q Consensus 148 s~N~l~~--~~p~~~~~l--------------------~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p 194 (325)
++|.++. ..|..+..+ ++|++|++++| .+++|+.|++++|++++..+
T Consensus 155 ~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred CCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 7776642 333333322 57888888887 46789999999999998888
Q ss_pred hhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 195 GELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++...
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence 88999999999999999999 7788899999999999999998753
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=2.7e-18 Score=155.23 Aligned_cols=166 Identities=23% Similarity=0.244 Sum_probs=128.8
Q ss_pred ccccCCccccccCccccCCCCCCCEEEecc-------------------ccCcCCCCCcccccCCCcCCEEecccCCCCC
Q 045233 70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQA-------------------YYYGFTGSIPSDISALSKLQLLDLSLNRLSG 130 (325)
Q Consensus 70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~-------------------~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 130 (325)
.++++.|.+..+....+..+++|++|++++ ++|.+.+..+..+.++++|++|++++|.+..
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 80 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred EEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 344444555444444455555555555500 3444444445557888999999999999863
Q ss_pred --CCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhh
Q 045233 131 --TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGEL 197 (325)
Q Consensus 131 --~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~ 197 (325)
..+..+.++++|++|++++|+++ .+|..+. ++|++|++++| .+++|++|++++|.+++..+..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred cCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 67788999999999999999998 5666554 79999999988 56789999999999998888889
Q ss_pred hCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233 198 TELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 198 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
..+++|+.|++++|+++ .+|..+..+++|+.|++++|++..
T Consensus 237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 99999999999999999 778888999999999999999875
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.5e-18 Score=155.72 Aligned_cols=153 Identities=27% Similarity=0.390 Sum_probs=78.9
Q ss_pred ccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCc
Q 045233 72 DVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNN 151 (325)
Q Consensus 72 ~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 151 (325)
+++.|.+..++. +..+++|++|++ ++|.+.+. +.+..+++|++|++++|.+++ ++. +..+++|++|++++|+
T Consensus 69 ~L~~n~i~~~~~--~~~l~~L~~L~L--~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 69 ELKDNQITDLAP--LKNLTKITELEL--SGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp ECCSSCCCCCGG--GTTCCSCCEEEC--CSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EccCCcCCCChh--HccCCCCCEEEc--cCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCc
Confidence 333444444333 555555555555 55554432 235555555555555555553 222 5555555555555555
Q ss_pred CCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCccc
Q 045233 152 LTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNK 222 (325)
Q Consensus 152 l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 222 (325)
+++ ++. +..+++|++|++++| .+++|+.|++++|++++..+ +..+++|+.|++++|++++..+ +.
T Consensus 141 l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~ 214 (308)
T 1h6u_A 141 ITN-ISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA 214 (308)
T ss_dssp CCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GT
T ss_pred cCc-Ccc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--cc
Confidence 553 222 555555555555555 33455555555555553322 4555555555555555554332 45
Q ss_pred CCCCCcEEEccCCCCC
Q 045233 223 QLSTMYIVRLSPNKGL 238 (325)
Q Consensus 223 ~l~~L~~L~l~~N~~~ 238 (325)
.+++|+.|++++|++.
T Consensus 215 ~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TCTTCCEEEEEEEEEE
T ss_pred CCCCCCEEEccCCeee
Confidence 5555555555555554
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=4e-18 Score=152.84 Aligned_cols=157 Identities=27% Similarity=0.360 Sum_probs=133.9
Q ss_pred cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233 71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150 (325)
Q Consensus 71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 150 (325)
++++.+.+..++ .+..+++|++|++ ++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|++|++++|
T Consensus 46 L~l~~~~i~~l~--~~~~l~~L~~L~L--~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 46 LSAFGTGVTTIE--GVQYLNNLIGLEL--KDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp EECTTSCCCCCT--TGGGCTTCCEEEC--CSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTS
T ss_pred EEeeCCCccCch--hhhccCCCCEEEc--cCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCC
Confidence 344455555555 4788999999999 8998886544 9999999999999999985 44 6899999999999999
Q ss_pred cCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233 151 NLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN 221 (325)
Q Consensus 151 ~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 221 (325)
++++ +|. +..+++|++|++++| .+++|++|++++|++++. +. +..+++|+.|++++|.+++..+ +
T Consensus 118 ~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l 191 (308)
T 1h6u_A 118 QITD-VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--L 191 (308)
T ss_dssp CCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred CCCC-chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--h
Confidence 9995 554 899999999999998 457899999999999964 43 8999999999999999996544 7
Q ss_pred cCCCCCcEEEccCCCCCchH
Q 045233 222 KQLSTMYIVRLSPNKGLGSN 241 (325)
Q Consensus 222 ~~l~~L~~L~l~~N~~~~~~ 241 (325)
..+++|+.|++++|++.+..
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCG
T ss_pred cCCCCCCEEEccCCccCccc
Confidence 89999999999999998754
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=1.6e-18 Score=152.65 Aligned_cols=148 Identities=22% Similarity=0.209 Sum_probs=129.1
Q ss_pred CCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEE
Q 045233 90 PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169 (325)
Q Consensus 90 ~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 169 (325)
++|++|++ ++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|++++|++++..|..+.++++|++|
T Consensus 28 ~~l~~L~l--s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDL--SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEEC--TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEEC--CCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 57999999 8999998877789999999999999999997777789999999999999999998888899999999999
Q ss_pred EcCcC-----------CCCCCcEEEccCCcCCCC-CchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCc----EEEcc
Q 045233 170 DLKVT-----------SMKNLTWLDISNNKIEGS-IPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMY----IVRLS 233 (325)
Q Consensus 170 ~l~~n-----------~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~l~ 233 (325)
++++| .+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+..+++|+ .++++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 99988 457899999999999874 689999999999999999999876666666555555 67777
Q ss_pred CCCCCc
Q 045233 234 PNKGLG 239 (325)
Q Consensus 234 ~N~~~~ 239 (325)
+|++..
T Consensus 186 ~n~l~~ 191 (276)
T 2z62_A 186 LNPMNF 191 (276)
T ss_dssp SSCCCE
T ss_pred CCcccc
Confidence 776653
No 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.9e-18 Score=152.52 Aligned_cols=156 Identities=23% Similarity=0.333 Sum_probs=131.3
Q ss_pred ccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeeccc
Q 045233 70 WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGN 149 (325)
Q Consensus 70 ~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 149 (325)
.++++.+.+..++ .+..+++|+.|++ ++|.+.+..+ +..+++|++|++++|.+++ +| .+..+++|++|++++
T Consensus 50 ~L~l~~~~i~~~~--~~~~l~~L~~L~L--~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 50 QIIANNSDIKSVQ--GIQYLPNVTKLFL--NGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp EEECTTSCCCCCT--TGGGCTTCCEEEC--CSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred EEEccCCCcccCh--hHhcCCCCCEEEc--cCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence 3444556666664 3778999999999 8999887554 8999999999999999985 44 489999999999999
Q ss_pred CcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCc
Q 045233 150 NNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFS 220 (325)
Q Consensus 150 N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 220 (325)
|++++ + +.+..+++|+.|++++| .+++|++|++++|++++..| +..+++|+.|++++|.+++. + .
T Consensus 122 n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~ 195 (291)
T 1h6t_A 122 NGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-A 195 (291)
T ss_dssp SCCCC-C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-G
T ss_pred CcCCC-C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-h
Confidence 99995 4 46889999999999998 56789999999999996554 89999999999999999964 4 4
Q ss_pred ccCCCCCcEEEccCCCCCc
Q 045233 221 NKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 221 ~~~l~~L~~L~l~~N~~~~ 239 (325)
+..+++|+.|++++|++..
T Consensus 196 l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GTTCTTCSEEEEEEEEEEC
T ss_pred hccCCCCCEEECcCCcccC
Confidence 8899999999999998754
No 68
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=7.7e-19 Score=172.61 Aligned_cols=148 Identities=24% Similarity=0.413 Sum_probs=107.9
Q ss_pred ccC--CCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-CCC-CCchhhcCC------cccceeecccCcCCC
Q 045233 85 NFS--CFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-LSG-TIPSNIGNL------RNLVHLDLGNNNLTG 154 (325)
Q Consensus 85 ~~~--~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~ 154 (325)
.+. ++++|++|++ ++|.+.+.+|+.+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++
T Consensus 242 ~l~~~~l~~L~~L~L--~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 242 DLKWDNLKDLTDVEV--YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp CCCGGGCTTCCEEEE--ECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred hhhhcccCCCCEEEe--cCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 456 8999999999 8999999999999999999999999998 887 788888776 88999999999998
Q ss_pred cCch--hccCCCCCcEEEcCcCCC----------CCCcEEEccCCcCCCCCchhhhCCCC-CCEEECCCCcCCCCCCCcc
Q 045233 155 PIPS--TLARLTNLKYLDLKVTSM----------KNLTWLDISNNKIEGSIPGELTELSR-PDCLSLSANKLSGPVPFSN 221 (325)
Q Consensus 155 ~~p~--~~~~l~~L~~L~l~~n~l----------~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~ 221 (325)
.+|. .+.++++|++|++++|.+ ++|++|++++|+++ .+|..+..+++ |+.|++++|.++ .+|..+
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 7887 888999999999888833 24555566666555 45555555555 555555555555 344443
Q ss_pred cCCC--CCcEEEccCCCC
Q 045233 222 KQLS--TMYIVRLSPNKG 237 (325)
Q Consensus 222 ~~l~--~L~~L~l~~N~~ 237 (325)
...+ +|+.|++++|.+
T Consensus 397 ~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CTTCSSCEEEEECCSSCT
T ss_pred hhcccCccCEEECcCCcC
Confidence 3322 344444444443
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=166.08 Aligned_cols=43 Identities=21% Similarity=0.083 Sum_probs=37.1
Q ss_pred hCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 198 TELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 198 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
..+++|++|++++|++++.+|..++.+++|+.|++++|.+.+.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence 5677888999999999988888889999999999999998763
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=158.13 Aligned_cols=173 Identities=21% Similarity=0.233 Sum_probs=147.3
Q ss_pred eeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCc
Q 045233 54 GITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIP 133 (325)
Q Consensus 54 gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 133 (325)
...|...+. . +.+.+.+..++. .-.++|++|++ ++|.+.+..+..+.++++|++|++++|.+++..|
T Consensus 27 ~~~C~~~~~---c-----~~~~~~l~~iP~---~~~~~L~~L~l--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 27 SLSCDRNGI---C-----KGSSGSLNSIPS---GLTEAVKSLDL--SNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp CCEECTTSE---E-----ECCSTTCSSCCT---TCCTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCCCCeE---e-----eCCCCCcccccc---cccccCcEEEC--CCCcCcccCHHHhccCCCCCEEECCCCccCccCH
Confidence 467766543 2 334555556554 23468999999 8999988777789999999999999999998778
Q ss_pred hhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCC-cCCCCCchhhhCC
Q 045233 134 SNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNN-KIEGSIPGELTEL 200 (325)
Q Consensus 134 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n-~l~~~~p~~~~~l 200 (325)
..|.++++|++|++++|++++..+..+.++++|++|++++| .+++|++|++++| .+++..+..+.++
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence 88999999999999999999655556999999999999988 4678999999999 4776778889999
Q ss_pred CCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233 201 SRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 201 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
++|+.|++++|.+++..|..+..+++|+.|++++|.+..
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 999999999999998889999999999999999999754
No 71
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.1e-18 Score=175.95 Aligned_cols=149 Identities=28% Similarity=0.372 Sum_probs=128.9
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-CCC-CCchhhcCCc-------ccceeecccCcCCCcC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-LSG-TIPSNIGNLR-------NLVHLDLGNNNLTGPI 156 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~ 156 (325)
|.++++|++|++ ++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.++ +|++|+|++|+++ .+
T Consensus 487 f~~L~~L~~L~L--s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 487 WSNLKDLTDVEL--YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp GGGCTTCCEEEE--ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred hccCCCCCEEEC--cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence 338999999999 8999999999999999999999999998 887 7898877766 9999999999999 88
Q ss_pred ch--hccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCC-CCEEECCCCcCCCCCCCcccCC
Q 045233 157 PS--TLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSR-PDCLSLSANKLSGPVPFSNKQL 224 (325)
Q Consensus 157 p~--~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l 224 (325)
|. .+.++++|+.|++++| .+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .+|..+...
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~ 641 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred CChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence 88 8999999999999998 4567889999999999 88888888888 999999999988 667766655
Q ss_pred CC--CcEEEccCCCCCc
Q 045233 225 ST--MYIVRLSPNKGLG 239 (325)
Q Consensus 225 ~~--L~~L~l~~N~~~~ 239 (325)
+. |+.|++++|.+.+
T Consensus 642 ~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CSSCEEEEECCSSCTTT
T ss_pred ccCCCCEEECcCCcCCC
Confidence 43 7777777776654
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=8.5e-19 Score=157.25 Aligned_cols=167 Identities=18% Similarity=0.136 Sum_probs=139.0
Q ss_pred ccccccCCccccccCcccc--CCCCCCCEEEeccccCcCCCCCc----ccccCCCcCCEEecccCCCCCCCchhhcCCcc
Q 045233 68 LSWYDVDLNAQAQLSQLNF--SCFPNLESLRIQAYYYGFTGSIP----SDISALSKLQLLDLSLNRLSGTIPSNIGNLRN 141 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~--~~l~~L~~L~l~~~~n~~~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 141 (325)
++.++++.|.+.......+ ..+++|++|++ ++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~L--s~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRL--RNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEE--ESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEe--ecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4445566666665555555 88999999999 8999987655 34567999999999999999888889999999
Q ss_pred cceeecccCcCCCc--Cc--hhccCCCCCcEEEcCcCC--------------CCCCcEEEccCCcCCCCCchhhhCC---
Q 045233 142 LVHLDLGNNNLTGP--IP--STLARLTNLKYLDLKVTS--------------MKNLTWLDISNNKIEGSIPGELTEL--- 200 (325)
Q Consensus 142 L~~L~Ls~N~l~~~--~p--~~~~~l~~L~~L~l~~n~--------------l~~L~~L~Ls~n~l~~~~p~~~~~l--- 200 (325)
|++|+|++|++.+. ++ ..+..+++|++|++++|. +++|++|++++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 99999999998752 22 234789999999999993 3789999999999998888887777
Q ss_pred CCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233 201 SRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 201 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
++|++|++++|+++ .+|..+. ++|+.|++++|++.+
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 69999999999999 6677664 799999999999875
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=1.9e-18 Score=149.05 Aligned_cols=162 Identities=18% Similarity=0.197 Sum_probs=138.2
Q ss_pred ccccccCCcc-ccccCccccCCCCCCCEEEecccc-CcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccc--
Q 045233 68 LSWYDVDLNA-QAQLSQLNFSCFPNLESLRIQAYY-YGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLV-- 143 (325)
Q Consensus 68 l~~l~~~~n~-~~~l~~~~~~~l~~L~~L~l~~~~-n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-- 143 (325)
|+.++++.|. +..++...|.++++|++|++ ++ |.+.+..+..+..+++|++|++++|.+++ +|. +..+++|+
T Consensus 57 L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l--~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 57 ISRIYVSIDVTLQQLESHSFYNLSKVTHIEI--RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp CCEEEEECCSSCCEECTTTEESCTTCCEEEE--EEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CcEEeCCCCCCcceeCHhHcCCCcCCcEEEC--CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 4455666775 77888778999999999999 87 88888777889999999999999999995 676 88888888
Q ss_pred -eeecccC-cCCCcCchhccCCCCCc-EEEcCcCCC----------CCCcEEEccCCc-CCCCCchhhhCC-CCCCEEEC
Q 045233 144 -HLDLGNN-NLTGPIPSTLARLTNLK-YLDLKVTSM----------KNLTWLDISNNK-IEGSIPGELTEL-SRPDCLSL 208 (325)
Q Consensus 144 -~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~l~~n~l----------~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~L 208 (325)
+|++++| ++++..+..|..+++|+ .|++++|.+ ++|+.|++++|+ +++..+..|..+ ++|+.|++
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 9999999 99976677899999999 999998832 579999999995 997777889999 99999999
Q ss_pred CCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233 209 SANKLSGPVPFSNKQLSTMYIVRLSPNK 236 (325)
Q Consensus 209 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 236 (325)
++|++++. |.. .+++|+.|+++++.
T Consensus 213 ~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 213 SQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CCCccccC-Chh--HhccCceeeccCcc
Confidence 99999954 443 67889999998764
No 74
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=5.4e-18 Score=142.01 Aligned_cols=142 Identities=17% Similarity=0.192 Sum_probs=98.3
Q ss_pred CCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233 87 SCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166 (325)
Q Consensus 87 ~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 166 (325)
..+++|+.|++ ++|.+. .+| .+..+++|++|++++|.++ .++.+..+++|++|++++|++++..|..+..+++|
T Consensus 41 ~~l~~L~~L~l--~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITL--ANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEE--ESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEec--cCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 44566666666 556555 333 4666666666666666554 22356666666666666666665556666666666
Q ss_pred cEEEcCcC-----------CCCCCcEEEccCCc-CCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccC
Q 045233 167 KYLDLKVT-----------SMKNLTWLDISNNK-IEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSP 234 (325)
Q Consensus 167 ~~L~l~~n-----------~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 234 (325)
++|++++| .+++|++|++++|. ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeC
Confidence 66666666 45677788888887 55 556 689999999999999999964 4 688999999999999
Q ss_pred CCCC
Q 045233 235 NKGL 238 (325)
Q Consensus 235 N~~~ 238 (325)
|++.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 9864
No 75
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=5.4e-18 Score=154.07 Aligned_cols=120 Identities=23% Similarity=0.363 Sum_probs=55.4
Q ss_pred ccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEE
Q 045233 112 ISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWL 182 (325)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L 182 (325)
+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ + +.+..+++|++|++++| .+++|++|
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 292 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSL 292 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEE
Confidence 33444444444444444422 22 4444444444444444442 2 23444445555555444 23445555
Q ss_pred EccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCC
Q 045233 183 DISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKG 237 (325)
Q Consensus 183 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~ 237 (325)
++++|.+++..|..+..+++|+.|++++|++++..| +..+++|+.+++++|++
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 555555554444445555555555555555554333 44455555555555543
No 76
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.6e-18 Score=146.38 Aligned_cols=151 Identities=21% Similarity=0.231 Sum_probs=112.5
Q ss_pred eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233 67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD 146 (325)
Q Consensus 67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 146 (325)
+++.++++.|.+..++...+..+++|++|++ ++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYL--GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEEC--CCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 3445556677777777777899999999999 89999977777789999999999999999976667789999999999
Q ss_pred cccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCC
Q 045233 147 LGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLST 226 (325)
Q Consensus 147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 226 (325)
+++|++++..+..+..+++|++| ++++|++++..+..+..+++|+.|++++|++.+ .+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L-------------~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~ 166 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDL-------------RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPG 166 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEE-------------ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTT
T ss_pred cCCCcCcccCHhHhccCCcCCEE-------------ECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCC
Confidence 99999997666667777766665 455555554445556666667777776666553 2334
Q ss_pred CcEEEccCCCCCc
Q 045233 227 MYIVRLSPNKGLG 239 (325)
Q Consensus 227 L~~L~l~~N~~~~ 239 (325)
|+.|+++.|.+.+
T Consensus 167 l~~L~~~~n~~~g 179 (208)
T 2o6s_A 167 IRYLSEWINKHSG 179 (208)
T ss_dssp THHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCc
Confidence 5555555555544
No 77
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=164.11 Aligned_cols=171 Identities=24% Similarity=0.242 Sum_probs=148.3
Q ss_pred eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233 67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD 146 (325)
Q Consensus 67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 146 (325)
+++.++++.|.+..+....|.++++|++|++ ++|.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEEC--CCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 4556777788888888888999999999999 88999888888899999999999999999977778899999999999
Q ss_pred cccCcCCCcCchhccCCCCCcEEEcCcC------------CCCCCcEEEccCCcCCCCCchhhhCCCCC----CEEECCC
Q 045233 147 LGNNNLTGPIPSTLARLTNLKYLDLKVT------------SMKNLTWLDISNNKIEGSIPGELTELSRP----DCLSLSA 210 (325)
Q Consensus 147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L----~~L~L~~ 210 (325)
+++|++++..+..++++++|++|++++| ++++|++|++++|.+++..|..+..+++| ..+++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 9999999655557999999999999988 35689999999999998888888888888 8999999
Q ss_pred CcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 211 NKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 211 N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
|.+++..|..+... +|+.+++++|.....
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~ 215 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLN 215 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCTT
T ss_pred CCceecCHHHhccC-cceeEeccccccccc
Confidence 99998777777665 799999999865543
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=2.5e-18 Score=156.87 Aligned_cols=187 Identities=21% Similarity=0.133 Sum_probs=128.1
Q ss_pred CCccceeeEeCCCCCeeE------eeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCc-ccccCCCcCCE
Q 045233 48 DHCKWIGITCNSAGSIIG------LNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIP-SDISALSKLQL 120 (325)
Q Consensus 48 ~~C~w~gv~c~~~~~v~~------l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p-~~l~~l~~L~~ 120 (325)
+.|.+..|.|... .+++ -+++.++++.|.+..++...|.++++|++|++ ++|.+.+.+| ..|.+++++++
T Consensus 7 C~C~~~~v~C~~~-~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L--s~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 7 CHCSNRVFLCQES-KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI--SQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp SEEETTEEEEEST-TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEE--ECCTTCCEECTTSBCSCTTCCE
T ss_pred cEeeCCEEEecCC-CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEEC--cCCCCCCccChhHhhcchhhhh
Confidence 5689999999642 1222 25667788899999999989999999999999 8999877665 45788888775
Q ss_pred -EecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC------------CC-CCCcEEEccC
Q 045233 121 -LDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT------------SM-KNLTWLDISN 186 (325)
Q Consensus 121 -L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n------------~l-~~L~~L~Ls~ 186 (325)
+.++.|+++...|..|.++++|++|++++|+++...+..+....++..|++..+ .+ ..++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 667789999777888999999999999999998655555556666666666443 11 2455666666
Q ss_pred CcCCCCCchhhhCCCCCCEEECCC-CcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 187 NKIEGSIPGELTELSRPDCLSLSA-NKLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 187 n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
|+++. +|.......+|+.+++.+ |.++...+..|..+++|+.|++++|++.
T Consensus 164 N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 164 NGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred ccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 66663 333333344555555543 3344333334555555666666555554
No 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=173.70 Aligned_cols=77 Identities=26% Similarity=0.323 Sum_probs=36.8
Q ss_pred CccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCC
Q 045233 75 LNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT 153 (325)
Q Consensus 75 ~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 153 (325)
.|.+..+....|.++++|++|++ ++|.+.+..|..+..+++|++|++++|.+.+..+..|.++++|++|++++|.++
T Consensus 299 ~n~i~~~~~~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 299 YNKINKIADEAFYGLDNLQVLNL--SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp SCCCCEECTTTTTTCSSCCEEEE--ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCcCCCCChHHhcCCCCCCEEEC--CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 33333333334444555555555 444444444444555555555555555554444444444555555555554443
No 80
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.1e-17 Score=163.01 Aligned_cols=158 Identities=23% Similarity=0.334 Sum_probs=135.3
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
|+.++++.+.+..++ .+..+++|+.|+| ++|.+.+..| +..+++|+.|+|++|.+++ +| .+..+++|++|+|
T Consensus 45 L~~L~l~~n~i~~l~--~l~~l~~L~~L~L--s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQ--GIQYLPNVTKLFL--NGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp CCCCBCTTCCCCCCT--TGGGCTTCCEEEC--TTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCEEECcCCCCCCCh--HHccCCCCCEEEe--eCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 444566667776665 4788999999999 8999887655 8899999999999999984 44 6899999999999
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCC
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP 218 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 218 (325)
++|++++ + +.+..+++|+.|+|++| .+++|+.|+|++|.+++..| +..+++|+.|+|++|+|++.
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-- 190 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-- 190 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--
Confidence 9999995 4 45899999999999998 56789999999999997666 89999999999999999964
Q ss_pred CcccCCCCCcEEEccCCCCCc
Q 045233 219 FSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 219 ~~~~~l~~L~~L~l~~N~~~~ 239 (325)
..+..+++|+.|++++|++..
T Consensus 191 ~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GGGTTCTTCSEEECCSEEEEC
T ss_pred hHHccCCCCCEEEccCCcCcC
Confidence 358999999999999998764
No 81
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1e-17 Score=146.89 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=122.2
Q ss_pred cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233 71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150 (325)
Q Consensus 71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 150 (325)
++++.+.+..+. .+..+++|+.|++ ++|.+.. +| .+..+++|++|++++|.+++. +. +..+++|++|++++|
T Consensus 24 l~l~~~~i~~~~--~~~~l~~L~~L~l--~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 24 QNLGKQSVTDLV--SQKELSGVQNFNG--DNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHTCSCTTSEE--CHHHHTTCSEEEC--TTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSS
T ss_pred HHhcCCCccccc--chhhcCcCcEEEC--cCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCC
Confidence 334455554444 3667888899999 7777764 44 678888899999999988854 44 888889999999999
Q ss_pred cCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233 151 NLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN 221 (325)
Q Consensus 151 ~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 221 (325)
++++ +|.. .. ++|+.|++++| .+++|++|++++|++++. + .+..+++|+.|++++|++++. ..+
T Consensus 96 ~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l 168 (263)
T 1xeu_A 96 RLKN-LNGI-PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGL 168 (263)
T ss_dssp CCSC-CTTC-CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred ccCC-cCcc-cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHh
Confidence 8884 4443 33 88899998888 567899999999999964 4 688999999999999999976 668
Q ss_pred cCCCCCcEEEccCCCCCch
Q 045233 222 KQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 222 ~~l~~L~~L~l~~N~~~~~ 240 (325)
..+++|+.|++++|++.+.
T Consensus 169 ~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCCCCCEEEEEEEEEECC
T ss_pred ccCCCCCEEeCCCCcccCC
Confidence 8999999999999987654
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.7e-17 Score=139.00 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=115.7
Q ss_pred cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233 71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150 (325)
Q Consensus 71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 150 (325)
++++.+.+..++ .+..+++|++|++ ++|.+. .++.+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 49 L~l~~n~i~~l~--~l~~l~~L~~L~l--~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 49 ITLANINVTDLT--GIEYAHNIKDLTI--NNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp EEEESSCCSCCT--TGGGCTTCSEEEE--ESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred EeccCCCccChH--HHhcCCCCCEEEc--cCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 344456666655 4788999999999 788554 3457899999999999999999878888999999999999999
Q ss_pred cCCCcCchhccCCCCCcEEEcCcCC----------CCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233 151 NLTGPIPSTLARLTNLKYLDLKVTS----------MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 151 ~l~~~~p~~~~~l~~L~~L~l~~n~----------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 215 (325)
++++..|..+..+++|++|++++|. +++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9998888999999999999999994 6789999999999995 44 78999999999999999864
No 83
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=3.4e-17 Score=148.77 Aligned_cols=143 Identities=24% Similarity=0.358 Sum_probs=94.3
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 165 (325)
+..+++|++|++ ++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++..+ +..+++
T Consensus 151 ~~~l~~L~~L~l--~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~ 222 (347)
T 4fmz_A 151 LSNMTGLNYLTV--TESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTR 222 (347)
T ss_dssp GTTCTTCCEEEC--CSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred hhhCCCCcEEEe--cCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCc
Confidence 667777777777 6666655433 6677777777777777763 333 6667777777777777764322 666777
Q ss_pred CcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233 166 LKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236 (325)
Q Consensus 166 L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 236 (325)
|+.|++++| .+++|++|++++|.+++. +.+..+++|+.|++++|++++. ..+..+++|+.|++++|+
T Consensus 223 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred CCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCc
Confidence 777777766 345677777777776642 3566677777777777776643 345666777777777776
Q ss_pred CCch
Q 045233 237 GLGS 240 (325)
Q Consensus 237 ~~~~ 240 (325)
+...
T Consensus 299 l~~~ 302 (347)
T 4fmz_A 299 LGNE 302 (347)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 6543
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=4.3e-17 Score=159.14 Aligned_cols=156 Identities=22% Similarity=0.230 Sum_probs=136.2
Q ss_pred ccCCCCCCCEEEeccccCcCCCCCc-ccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCC-CcCchhccC
Q 045233 85 NFSCFPNLESLRIQAYYYGFTGSIP-SDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLT-GPIPSTLAR 162 (325)
Q Consensus 85 ~~~~l~~L~~L~l~~~~n~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~ 162 (325)
.+..++.|+.+++ ..+......+ ..+..+++++.++++.|.+.+..+..+..+++|++|++++|++. +..|..|..
T Consensus 415 ~~~~l~~L~~l~l--~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~ 492 (635)
T 4g8a_A 415 NFLGLEQLEHLDF--QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492 (635)
T ss_dssp CCTTCTTCCEEEC--TTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred cccccccccchhh--hhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh
Confidence 3667888888888 6666555443 45788999999999999999888888999999999999999854 456788999
Q ss_pred CCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCC-CCCcEE
Q 045233 163 LTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQL-STMYIV 230 (325)
Q Consensus 163 l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L 230 (325)
+++|++|++++| ++++|++|+|++|++++..|..|.++++|+.|++++|+|++..|..+..+ ++|+.|
T Consensus 493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 999999999998 56789999999999999889999999999999999999999999999888 689999
Q ss_pred EccCCCCCchHH
Q 045233 231 RLSPNKGLGSNF 242 (325)
Q Consensus 231 ~l~~N~~~~~~~ 242 (325)
++++|++.|..-
T Consensus 573 ~L~~Np~~C~C~ 584 (635)
T 4g8a_A 573 NLTQNDFACTCE 584 (635)
T ss_dssp ECTTCCBCCSGG
T ss_pred EeeCCCCcccCC
Confidence 999999998754
No 85
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=4.6e-17 Score=135.86 Aligned_cols=127 Identities=27% Similarity=0.306 Sum_probs=94.3
Q ss_pred ccCcCCCCCcccccCCCcCCEEecccCCCCCCCch-hhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCC
Q 045233 100 YYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPS-NIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKN 178 (325)
Q Consensus 100 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 178 (325)
+++.+. .+|..+.. +|++|++++|.+++..+. .|..+++|++|+|++|++++..|..|..+++|++
T Consensus 16 s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~---------- 82 (192)
T 1w8a_A 16 TGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE---------- 82 (192)
T ss_dssp TTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE----------
T ss_pred CCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE----------
Confidence 455543 34444432 677888888888755443 3778888888888888888777777776655444
Q ss_pred CcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 179 LTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 179 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
|+|++|++++..|..|.++++|+.|++++|++++..|..+..+++|+.|++++|++.|...
T Consensus 83 ---L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 83 ---LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ---EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ---EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 4566677776777778888889999999999988888888899999999999999988754
No 86
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=4e-17 Score=139.21 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=115.2
Q ss_pred eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233 67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD 146 (325)
Q Consensus 67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 146 (325)
+++.++++.|.+..++...|..+++|++|++ ++|.+.+..|..|.++++|++|+|++|.++...+..|.++++|++|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~L--s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDL--SNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEEC--CSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEEC--CCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 3445566677888888888999999999999 99999998899999999999999999999966666689999999999
Q ss_pred cccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233 147 LGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 215 (325)
|++|++++..|..|..+++|+ +|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~-------------~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLN-------------LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCC-------------EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCEeCHHHcCCCCCCC-------------EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999988788887766655 45677788887777789999999999999999874
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=4.1e-18 Score=153.29 Aligned_cols=159 Identities=23% Similarity=0.197 Sum_probs=114.4
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
++.++++.|.+..+....+..+++|++|++ ++|.+.+..+ +..+++|++|++++|.+++ ++ ..++|++|++
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l 106 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNL--SSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEEC--TTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEEC--CCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence 444555566666666556777777888888 7777765443 7777778888888777763 22 3367788888
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhh-hCCCCCCEEECCCCcCCC
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGEL-TELSRPDCLSLSANKLSG 215 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~ 215 (325)
++|++++..+. .+++|++|++++| .+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 88887754333 3577888888887 34678889999999887767666 468889999999999885
Q ss_pred CCCCcccCCCCCcEEEccCCCCCch
Q 045233 216 PVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 216 ~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
. +. ...+++|+.|++++|.+...
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 184 V-KG-QVVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCEE
T ss_pred c-cc-ccccccCCEEECCCCcCCcc
Confidence 5 32 23588899999999988753
No 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=138.50 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=130.0
Q ss_pred CCCCCccceeeEeCCCC--Ce---eEeeccccccCCccccccC-ccccCCCCCCCEEEeccccCcCCCCCcccccCCCcC
Q 045233 45 YSSDHCKWIGITCNSAG--SI---IGLNLSWYDVDLNAQAQLS-QLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKL 118 (325)
Q Consensus 45 ~~~~~C~w~gv~c~~~~--~v---~~l~l~~l~~~~n~~~~l~-~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L 118 (325)
++.+.|.|..+.|+... .+ ..-.++.++++.|.+..+. ...|..+++|+.|++ ++|.+.+..+..|..+++|
T Consensus 6 P~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L--~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINF--SNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEEC--CSSCCCEECTTTTTTCTTC
T ss_pred CCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEEC--CCCcCCEECHHHhCCCCCC
Confidence 44567899999996532 11 1113456777888888774 345889999999999 9999998888899999999
Q ss_pred CEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhh
Q 045233 119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELT 198 (325)
Q Consensus 119 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~ 198 (325)
++|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++| ++|+|++|++++..|..|.
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV-------------RLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC-------------SEEECTTSCCCCBCTTTTT
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC-------------CEEECCCCcCCEECHHHhc
Confidence 999999999998888889999999999999999998888888776655 4557778888888899999
Q ss_pred CCCCCCEEECCCCcCCCC
Q 045233 199 ELSRPDCLSLSANKLSGP 216 (325)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~ 216 (325)
.+++|+.|++++|+++..
T Consensus 151 ~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 151 TLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TCTTCCEEECCSCCEECS
T ss_pred CCCCCCEEEecCcCCcCC
Confidence 999999999999999854
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.1e-17 Score=159.21 Aligned_cols=159 Identities=23% Similarity=0.203 Sum_probs=129.7
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
+..++++.|.+..+....+..+++|++|++ ++|.+.+..| +..+++|++|++++|.+++ +| ..++|++|++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L 106 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNL--SSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEEC--TTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEe--eCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEEC
Confidence 444555667777777777889999999999 8888887655 8889999999999998884 33 2388999999
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhh-CCCCCCEEECCCCcCCC
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELT-ELSRPDCLSLSANKLSG 215 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~ 215 (325)
++|.+++..+. .+++|+.|++++| .+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99999865543 4678999999988 357899999999999988888876 79999999999999996
Q ss_pred CCCCcccCCCCCcEEEccCCCCCch
Q 045233 216 PVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 216 ~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
..+ ...+++|+.|++++|.+.+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEE
T ss_pred ccc--cccCCCCCEEECCCCCCCCC
Confidence 633 34689999999999999864
No 90
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=2e-17 Score=151.57 Aligned_cols=168 Identities=22% Similarity=0.204 Sum_probs=144.0
Q ss_pred CCCCCccceeeEeCCCC-----CeeEeeccccccCCccccccCccccC-CCCCCCEEEeccccCcCCCCCcccccCCCcC
Q 045233 45 YSSDHCKWIGITCNSAG-----SIIGLNLSWYDVDLNAQAQLSQLNFS-CFPNLESLRIQAYYYGFTGSIPSDISALSKL 118 (325)
Q Consensus 45 ~~~~~C~w~gv~c~~~~-----~v~~l~l~~l~~~~n~~~~l~~~~~~-~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L 118 (325)
+..+.|.+..+.|...+ .-..-.++.++++.|.+..++...+. .+++|+.|++ ++|.+.+..+..|..+++|
T Consensus 13 p~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L--~~N~i~~i~~~~~~~l~~L 90 (361)
T 2xot_A 13 PANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL--SHNHLNFISSEAFVPVPNL 90 (361)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEEC--CSSCCCEECTTTTTTCTTC
T ss_pred CCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEEC--CCCcCCccChhhccCCCCC
Confidence 44566888899996531 11112356678888998888887787 9999999999 9999998888889999999
Q ss_pred CEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCC--------------CCCCcEEEc
Q 045233 119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTS--------------MKNLTWLDI 184 (325)
Q Consensus 119 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~--------------l~~L~~L~L 184 (325)
++|+|++|.++...+..|.++++|++|+|++|++++..|..|..+++|+.|++++|. +++|+.|+|
T Consensus 91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 999999999997777789999999999999999998888999999999999999982 678999999
Q ss_pred cCCcCCCCCchhhhCCCC--CCEEECCCCcCC
Q 045233 185 SNNKIEGSIPGELTELSR--PDCLSLSANKLS 214 (325)
Q Consensus 185 s~n~l~~~~p~~~~~l~~--L~~L~L~~N~l~ 214 (325)
++|++++..+..+..++. ++.|+|++|++.
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 999999777788888887 488999999986
No 91
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=9.2e-17 Score=152.03 Aligned_cols=156 Identities=26% Similarity=0.354 Sum_probs=99.5
Q ss_pred cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233 71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150 (325)
Q Consensus 71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 150 (325)
++++.|.+..+.. +..+++|+.|++ ++|.+.+. +.+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 204 L~l~~n~l~~~~~--~~~l~~L~~L~l--~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 204 LIATNNQISDITP--LGILTNLDELSL--NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275 (466)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEEC--CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred EEecCCccccccc--ccccCCCCEEEC--CCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC
Confidence 4444454444332 556777777777 66666543 346667777777777777764433 666777777777777
Q ss_pred cCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233 151 NLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN 221 (325)
Q Consensus 151 ~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 221 (325)
++++. |. +..+++|+.|++++| .+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+
T Consensus 276 ~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l 349 (466)
T 1o6v_A 276 QISNI-SP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSL 349 (466)
T ss_dssp CCCCC-GG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred ccCcc-cc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhh
Confidence 77643 33 666777777777766 34567777777777765544 56667777777777776654 345
Q ss_pred cCCCCCcEEEccCCCCCch
Q 045233 222 KQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 222 ~~l~~L~~L~l~~N~~~~~ 240 (325)
..+++|+.|++++|++.+.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp TTCTTCCEEECCSSCCCBC
T ss_pred ccCCCCCEEeCCCCccCcc
Confidence 6666777777777766554
No 92
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=9.7e-17 Score=133.87 Aligned_cols=138 Identities=20% Similarity=0.300 Sum_probs=110.5
Q ss_pred CCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcc-cccCCCcCCEEecc
Q 045233 46 SSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPS-DISALSKLQLLDLS 124 (325)
Q Consensus 46 ~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~-~l~~l~~L~~L~Ls 124 (325)
..+.|.|..+.|.. +.+..++.. -.++|++|++ ++|.+.+..+. .+..+++|++|+++
T Consensus 4 ~~C~C~~~~l~~s~----------------~~l~~ip~~---~~~~l~~L~l--~~n~i~~~~~~~~~~~l~~L~~L~Ls 62 (192)
T 1w8a_A 4 AMCHCEGTTVDCTG----------------RGLKEIPRD---IPLHTTELLL--NDNELGRISSDGLFGRLPHLVKLELK 62 (192)
T ss_dssp TTSEEETTEEECTT----------------SCCSSCCSC---CCTTCSEEEC--CSCCCCSBCCSCSGGGCTTCCEEECC
T ss_pred CCCEECCCEEEcCC----------------CCcCcCccC---CCCCCCEEEC--CCCcCCccCCccccccCCCCCEEECC
Confidence 44567887776643 233333331 1348999999 89999877664 48899999999999
Q ss_pred cCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCC
Q 045233 125 LNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPD 204 (325)
Q Consensus 125 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 204 (325)
+|.+++..|..|.++++|++|+|++|++++..|..|..+++| ++|++++|++++..|..+..+++|+
T Consensus 63 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 63 RNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL-------------KTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp SSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC-------------CEEECCSSCCCEECTTSSTTCTTCC
T ss_pred CCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCC-------------CEEECCCCcCCeeCHHHhhcCCCCC
Confidence 999998889999999999999999999998777777766554 5567788888888899999999999
Q ss_pred EEECCCCcCCCCC
Q 045233 205 CLSLSANKLSGPV 217 (325)
Q Consensus 205 ~L~L~~N~l~~~~ 217 (325)
.|++++|++++..
T Consensus 130 ~L~L~~N~l~c~c 142 (192)
T 1w8a_A 130 SLNLASNPFNCNC 142 (192)
T ss_dssp EEECTTCCBCCSG
T ss_pred EEEeCCCCccCcC
Confidence 9999999998653
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=2.1e-16 Score=152.69 Aligned_cols=174 Identities=23% Similarity=0.262 Sum_probs=120.8
Q ss_pred CCCCc-----cceee-EeCCCCCeeEeecc----------------ccccCCccccccCccccCCCCCCCEEEeccccCc
Q 045233 46 SSDHC-----KWIGI-TCNSAGSIIGLNLS----------------WYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYG 103 (325)
Q Consensus 46 ~~~~C-----~w~gv-~c~~~~~v~~l~l~----------------~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~ 103 (325)
..++| .|.++ .|.. .+++.++++ .++++.|.+..++ ..+++|+.|++ ++|.
T Consensus 39 ~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~L--s~N~ 111 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP----ELPASLEYLDA--CDNR 111 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC----CCCTTCCEEEC--CSSC
T ss_pred cCCccccccchhhhcccccc-CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc----cccCCCCEEEc--cCCC
Confidence 45667 68888 5632 234444443 3444445444443 34677777777 6777
Q ss_pred CCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCC-------
Q 045233 104 FTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM------- 176 (325)
Q Consensus 104 ~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l------- 176 (325)
+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|+|++|++++ +|. .+++|+.|++++|.+
T Consensus 112 l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~ 179 (571)
T 3cvr_A 112 LST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELP 179 (571)
T ss_dssp CSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCC
T ss_pred CCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhh
Confidence 766 555 544 77777777777775 555 56778888888888874 555 567888888888854
Q ss_pred CCCcEEEccCCcCCCCCchhhhCCCCC-------CEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHHH
Q 045233 177 KNLTWLDISNNKIEGSIPGELTELSRP-------DCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNFI 243 (325)
Q Consensus 177 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~~ 243 (325)
++|+.|+|++|+++ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|++++....
T Consensus 180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 36888888888888 5665 544 66 99999999999 5788888899999999999999875443
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.9e-16 Score=140.77 Aligned_cols=143 Identities=27% Similarity=0.316 Sum_probs=125.7
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 165 (325)
+..+++|+.|++ ++|.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|++++ +| .+..+++
T Consensus 42 ~~~l~~L~~L~l--~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIA--NNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKK 113 (291)
T ss_dssp HHHHHTCCEEEC--TTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTT
T ss_pred hhhcCcccEEEc--cCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCC
Confidence 556889999999 88888754 3 488899999999999999954 44 8999999999999999985 44 4999999
Q ss_pred CcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233 166 LKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236 (325)
Q Consensus 166 L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 236 (325)
|++|++++| .+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|.
T Consensus 114 L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 999999999 467899999999999965 578999999999999999997655 8999999999999999
Q ss_pred CCch
Q 045233 237 GLGS 240 (325)
Q Consensus 237 ~~~~ 240 (325)
+...
T Consensus 190 i~~l 193 (291)
T 1h6t_A 190 ISDL 193 (291)
T ss_dssp CCBC
T ss_pred CCCC
Confidence 8864
No 95
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=2.7e-16 Score=148.81 Aligned_cols=155 Identities=30% Similarity=0.411 Sum_probs=86.2
Q ss_pred cccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233 71 YDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150 (325)
Q Consensus 71 l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 150 (325)
++++.|.+..++ .+..+++|++|++ ++|.+.+..| +..+++|++|++++|.+++ + +.+..+++|++|++++|
T Consensus 182 L~l~~n~l~~~~--~l~~l~~L~~L~l--~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 182 LDISSNKVSDIS--VLAKLTNLESLIA--TNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANN 253 (466)
T ss_dssp EECCSSCCCCCG--GGGGCTTCSEEEC--CSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred EECcCCcCCCCh--hhccCCCCCEEEe--cCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCC
Confidence 344444444332 2455566666666 5555554433 4555666666666666653 2 23555666666666666
Q ss_pred cCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcc
Q 045233 151 NLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSN 221 (325)
Q Consensus 151 ~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 221 (325)
.+++..| +..+++|+.|++++| .+++|+.|++++|++++..| +..+++|+.|++++|++++..| +
T Consensus 254 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~ 327 (466)
T 1o6v_A 254 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V 327 (466)
T ss_dssp CCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G
T ss_pred ccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h
Confidence 6653322 556666666666655 33456666666666654332 5556666666666666665443 4
Q ss_pred cCCCCCcEEEccCCCCCc
Q 045233 222 KQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 222 ~~l~~L~~L~l~~N~~~~ 239 (325)
..+++|+.|++++|++.+
T Consensus 328 ~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp GGCTTCCEEECCSSCCCC
T ss_pred ccCccCCEeECCCCccCC
Confidence 556666666666666554
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=1e-16 Score=154.87 Aligned_cols=148 Identities=26% Similarity=0.356 Sum_probs=123.8
Q ss_pred eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233 67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD 146 (325)
Q Consensus 67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 146 (325)
++..++++.|.+..++... +++|++|++ ++|.+. .+| ..+++|++|++++|.+++ +|. +.+ +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~L--s~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEI--TQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEEC--CSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEEC--cCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 6778999999888776532 488999999 899888 566 457999999999999996 777 665 999999
Q ss_pred cccCcCCCcCchhccCCCCCcEEEcCcCCC-------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCC
Q 045233 147 LGNNNLTGPIPSTLARLTNLKYLDLKVTSM-------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPF 219 (325)
Q Consensus 147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l-------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 219 (325)
|++|++++ +|. .+++|+.|++++|.+ ++|++|++++|++++ +|. +. ++|+.|+|++|+|+ .+|.
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh
Confidence 99999996 776 689999999999954 589999999999996 666 55 89999999999999 5666
Q ss_pred cccCCCCC-------cEEEccCCCCCc
Q 045233 220 SNKQLSTM-------YIVRLSPNKGLG 239 (325)
Q Consensus 220 ~~~~l~~L-------~~L~l~~N~~~~ 239 (325)
+.. +| +.|++++|.+..
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp -CC----------CCEEEECCSSCCCC
T ss_pred -HHH--hhhcccccceEEecCCCccee
Confidence 554 77 999999999875
No 97
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=3.5e-16 Score=128.57 Aligned_cols=113 Identities=23% Similarity=0.235 Sum_probs=71.4
Q ss_pred cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchh
Q 045233 117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGE 196 (325)
Q Consensus 117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~ 196 (325)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++| ++|++++|++++..+..
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL-------------TILYLHENKLQSLPNGV 95 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-------------CEEECCSSCCCCCCTTT
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc-------------CEEECCCCCccccCHHH
Confidence 45555555555554444445555666666666666654333334444333 33445555555555556
Q ss_pred hhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 197 LTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 197 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|...
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6777888888888888886666667788888889999998888654
No 98
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=5.9e-16 Score=146.19 Aligned_cols=152 Identities=25% Similarity=0.232 Sum_probs=122.8
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
|+.++++.|.+..+ +++.+++|++|++ ++|.+.+. | +.++++|++|++++|.+++ +| ++.+++|++|++
T Consensus 66 L~~L~Ls~n~l~~~---~~~~l~~L~~L~L--s~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 66 LTKLICTSNNITTL---DLSQNTNLTYLAC--DSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp CSEEECCSSCCSCC---CCTTCTTCSEEEC--CSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCEEEccCCcCCeE---ccccCCCCCEEEC--cCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 34455556655554 3778888888888 78887764 3 7888888888888888885 44 788888899999
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCC
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVP 218 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 218 (325)
++|++++ ++ ++.+++|++|++++| .+++|++|++++|++++ +| +..+++|+.|++++|++++.
T Consensus 135 ~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-- 206 (457)
T 3bz5_A 135 ARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-- 206 (457)
T ss_dssp TTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--
T ss_pred CCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--
Confidence 9988886 33 778888999998888 56789999999999996 45 78899999999999999965
Q ss_pred CcccCCCCCcEEEccCCCCCc
Q 045233 219 FSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 219 ~~~~~l~~L~~L~l~~N~~~~ 239 (325)
.++.+++|+.|++++|++.+
T Consensus 207 -~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 207 -DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp -CCTTCTTCSEEECCSSCCSC
T ss_pred -ccccCCCCCEEECcCCcccc
Confidence 37889999999999999887
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=3e-16 Score=134.54 Aligned_cols=134 Identities=25% Similarity=0.255 Sum_probs=113.6
Q ss_pred eccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233 67 NLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD 146 (325)
Q Consensus 67 ~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 146 (325)
+++.++++.|.+..+....+..+++|++|++ ++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYL--GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEEC--CCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 4555666778888887778999999999999 89999877677789999999999999999977777789999999999
Q ss_pred cccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233 147 LGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGP 216 (325)
Q Consensus 147 Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 216 (325)
|++|+++ .+|..+..+++| ++|++++|++++..+..+..+++|+.|++++|+++..
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L-------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHL-------------THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTC-------------SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ccCCccc-ccCcccccCCCC-------------CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9999999 788877766655 4557777888866667889999999999999998854
No 100
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=3.6e-16 Score=130.57 Aligned_cols=126 Identities=22% Similarity=0.271 Sum_probs=97.7
Q ss_pred ccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCC
Q 045233 100 YYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNL 179 (325)
Q Consensus 100 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L 179 (325)
+++.+. .+|..+. ++|++|++++|.++ .+|..|.++++|++|+|++|++++..+..|..+++|+
T Consensus 18 ~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~------------ 81 (193)
T 2wfh_A 18 SNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL------------ 81 (193)
T ss_dssp TTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC------------
T ss_pred CCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC------------
Confidence 444444 3343332 57888888888887 6778888888888888888888866666777665554
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 180 TWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 180 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
+|+|++|++++..|..|.++++|+.|+|++|+++...+..+..+++|+.|++++|++.|...
T Consensus 82 -~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 82 -TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp -EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred -EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 45667777777777788999999999999999997777778999999999999999987654
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1.2e-16 Score=130.23 Aligned_cols=134 Identities=21% Similarity=0.201 Sum_probs=105.0
Q ss_pred CCCCCCEEEeccccCcCC-CCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233 88 CFPNLESLRIQAYYYGFT-GSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166 (325)
Q Consensus 88 ~l~~L~~L~l~~~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 166 (325)
..++|+.|++ ++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|
T Consensus 22 ~~~~L~~L~l--~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVL--DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEEC--CSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEEC--CCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 3578899999 888887 67788888899999999999998855 678889999999999999987677776666655
Q ss_pred cEEEcCcCCCCCCcEEEccCCcCCCCC-chhhhCCCCCCEEECCCCcCCCCCC---CcccCCCCCcEEEccCCCCC
Q 045233 167 KYLDLKVTSMKNLTWLDISNNKIEGSI-PGELTELSRPDCLSLSANKLSGPVP---FSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 167 ~~L~l~~n~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~l~~N~~~ 238 (325)
++ |++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|...
T Consensus 98 ~~-------------L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 98 TH-------------LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CE-------------EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CE-------------EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 54 456666666432 2678888888999999988886554 46788888888888888754
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=1.3e-17 Score=150.70 Aligned_cols=147 Identities=22% Similarity=0.186 Sum_probs=77.5
Q ss_pred CCCCCCCEEEeccccCcCCCC-CcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC-cCCCc-CchhccCC
Q 045233 87 SCFPNLESLRIQAYYYGFTGS-IPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN-NLTGP-IPSTLARL 163 (325)
Q Consensus 87 ~~l~~L~~L~l~~~~n~~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l 163 (325)
..+++|++|++ ++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+
T Consensus 90 ~~~~~L~~L~L--~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 90 FSPFRVQHMDL--SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CCCBCCCEEEC--TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred ccCCCCCEEEc--cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 34555666666 55555443 4445555556666666666555555555555555666666555 44431 34445555
Q ss_pred CCCcEEEcCcC-C------------CC-CCcEEEccCC--cCC-CCCchhhhCCCCCCEEECCCCc-CCCCCCCcccCCC
Q 045233 164 TNLKYLDLKVT-S------------MK-NLTWLDISNN--KIE-GSIPGELTELSRPDCLSLSANK-LSGPVPFSNKQLS 225 (325)
Q Consensus 164 ~~L~~L~l~~n-~------------l~-~L~~L~Ls~n--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~ 225 (325)
++|++|++++| . ++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+..++
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 55555555555 2 23 5555555555 333 2344444555555555555555 4444444455555
Q ss_pred CCcEEEccCC
Q 045233 226 TMYIVRLSPN 235 (325)
Q Consensus 226 ~L~~L~l~~N 235 (325)
+|+.|++++|
T Consensus 248 ~L~~L~l~~~ 257 (336)
T 2ast_B 248 YLQHLSLSRC 257 (336)
T ss_dssp TCCEEECTTC
T ss_pred CCCEeeCCCC
Confidence 5555555555
No 103
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=9.9e-16 Score=144.65 Aligned_cols=154 Identities=22% Similarity=0.205 Sum_probs=128.6
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
|+.++++.|.+..+ +++.+++|++|++ ++|.+.+. | +..+++|++|++++|.+++. + ++.+++|++|++
T Consensus 87 L~~L~Ls~N~l~~~---~~~~l~~L~~L~L--~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l 155 (457)
T 3bz5_A 87 LTYLACDSNKLTNL---DVTPLTKLTYLNC--DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDC 155 (457)
T ss_dssp CSEEECCSSCCSCC---CCTTCTTCCEEEC--CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCEEECcCCCCcee---ecCCCCcCCEEEC--CCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEEC
Confidence 34456666766655 4888999999999 88888874 4 88999999999999999963 3 788999999999
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcC--------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCC
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVT--------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPF 219 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n--------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 219 (325)
++|+..+.+ .+..+++|+.|++++| .+++|+.|++++|++++. .+..+++|+.|++++|++++ +|
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip- 228 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID- 228 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-
Confidence 999666566 4788999999999988 456899999999999965 37889999999999999997 55
Q ss_pred cccCCCCCcEEEccCCCCCch
Q 045233 220 SNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 220 ~~~~l~~L~~L~l~~N~~~~~ 240 (325)
++.+++|+.|++++|++.+.
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCC
T ss_pred -ccccCCCCEEEeeCCcCCCc
Confidence 78899999999999998764
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=7.8e-17 Score=128.60 Aligned_cols=130 Identities=19% Similarity=0.213 Sum_probs=107.8
Q ss_pred CCCCCCEEEeccccCcCC-CCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCC
Q 045233 88 CFPNLESLRIQAYYYGFT-GSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNL 166 (325)
Q Consensus 88 ~l~~L~~L~l~~~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 166 (325)
..++|+.|++ ++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|
T Consensus 15 ~~~~l~~L~l--~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVL--DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEEC--TTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEc--cCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 3578999999 889888 78888889999999999999999865 778999999999999999997788877666665
Q ss_pred cEEEcCcCCCCCCcEEEccCCcCCCC-CchhhhCCCCCCEEECCCCcCCCCCC---CcccCCCCCcEEEccC
Q 045233 167 KYLDLKVTSMKNLTWLDISNNKIEGS-IPGELTELSRPDCLSLSANKLSGPVP---FSNKQLSTMYIVRLSP 234 (325)
Q Consensus 167 ~~L~l~~n~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~l~~ 234 (325)
++ |++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 91 ~~-------------L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 TH-------------LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CE-------------EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CE-------------EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 55 56666777753 34788999999999999999997665 4788899999998763
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=1.6e-17 Score=153.32 Aligned_cols=152 Identities=21% Similarity=0.185 Sum_probs=80.2
Q ss_pred CCCCCCCEEEeccccCcCCC----CCcccccCCCcCCEEecccCCCCCCCchhh----cCC---------cccceeeccc
Q 045233 87 SCFPNLESLRIQAYYYGFTG----SIPSDISALSKLQLLDLSLNRLSGTIPSNI----GNL---------RNLVHLDLGN 149 (325)
Q Consensus 87 ~~l~~L~~L~l~~~~n~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l---------~~L~~L~Ls~ 149 (325)
..+++|++|++ ++|.+.+ .+|..+..+++|++|++++|.++...+..+ ..+ ++|++|++++
T Consensus 91 ~~~~~L~~L~L--s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 91 LKCPKLHTVRL--SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp TTCTTCCEEEC--CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred hhCCcccEEEC--CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 44555555555 5555544 244445555555555555555542222222 222 5555556665
Q ss_pred CcCC-CcCc---hhccCCCCCcEEEcCcCC----------------CCCCcEEEccCCcCC----CCCchhhhCCCCCCE
Q 045233 150 NNLT-GPIP---STLARLTNLKYLDLKVTS----------------MKNLTWLDISNNKIE----GSIPGELTELSRPDC 205 (325)
Q Consensus 150 N~l~-~~~p---~~~~~l~~L~~L~l~~n~----------------l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~ 205 (325)
|+++ +.+| ..+..+++|+.|++++|. +++|++|+|++|.++ ..+|..+..+++|+.
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 5555 2233 244455566666665552 345666666666664 345555666666666
Q ss_pred EECCCCcCCCC----CCCcc--cCCCCCcEEEccCCCCCch
Q 045233 206 LSLSANKLSGP----VPFSN--KQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 206 L~L~~N~l~~~----~p~~~--~~l~~L~~L~l~~N~~~~~ 240 (325)
|+|++|.+++. +|..+ +.+++|+.|++++|.+...
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 66666666543 33334 2256666666666666543
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=2.4e-17 Score=148.99 Aligned_cols=169 Identities=18% Similarity=0.161 Sum_probs=137.2
Q ss_pred ccccccCCcccccc-CccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC-CCCC-CCchhhcCCcccce
Q 045233 68 LSWYDVDLNAQAQL-SQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN-RLSG-TIPSNIGNLRNLVH 144 (325)
Q Consensus 68 l~~l~~~~n~~~~l-~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n-~l~~-~~p~~~~~l~~L~~ 144 (325)
|+.++++.+.+... -...+..+++|++|++ ++|.+.+..+..+..+++|++|++++| .+++ .++..+.++++|++
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L--~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSL--EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEEC--TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeC--cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 33445555554321 1123778999999999 889888888888999999999999999 6775 36777889999999
Q ss_pred eecccC-cCCCc-CchhccCCC-CCcEEEcCcC--------------CCCCCcEEEccCCc-CCCCCchhhhCCCCCCEE
Q 045233 145 LDLGNN-NLTGP-IPSTLARLT-NLKYLDLKVT--------------SMKNLTWLDISNNK-IEGSIPGELTELSRPDCL 206 (325)
Q Consensus 145 L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~l~~n--------------~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L 206 (325)
|++++| .+++. ++..+..++ +|++|++++| .+++|++|++++|. +++..+..+..+++|+.|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 999999 99854 577788999 9999999988 45799999999999 787888899999999999
Q ss_pred ECCCCc-CCCCCCCcccCCCCCcEEEccCCCCCc
Q 045233 207 SLSANK-LSGPVPFSNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 207 ~L~~N~-l~~~~p~~~~~l~~L~~L~l~~N~~~~ 239 (325)
++++|. ++......++.+++|+.|++++| +..
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 999995 33222235788999999999999 443
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=2.6e-17 Score=150.78 Aligned_cols=169 Identities=21% Similarity=0.266 Sum_probs=110.5
Q ss_pred ccCCccccccCc----cccCCCC-CCCEEEeccccCcCCCCCcccccCC-----CcCCEEecccCCCCCCCchhhc----
Q 045233 72 DVDLNAQAQLSQ----LNFSCFP-NLESLRIQAYYYGFTGSIPSDISAL-----SKLQLLDLSLNRLSGTIPSNIG---- 137 (325)
Q Consensus 72 ~~~~n~~~~l~~----~~~~~l~-~L~~L~l~~~~n~~~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~~~---- 137 (325)
+++.|.+...+. ..+..++ +|++|++ ++|.+.+..+..+..+ ++|++|++++|.+++..+..+.
T Consensus 28 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L--s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 105 (362)
T 3goz_A 28 DLSLNNLYSISTVELIQAFANTPASVTSLNL--SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTCCTTCCEEEC--CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred EccCCCCChHHHHHHHHHHHhCCCceeEEEC--cCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHH
Confidence 334444444443 3456677 7888888 7777777666666554 7788888888888765555433
Q ss_pred CC-cccceeecccCcCCCcCchhc----cC-CCCCcEEEcCcCCC----------------CCCcEEEccCCcCCCCCch
Q 045233 138 NL-RNLVHLDLGNNNLTGPIPSTL----AR-LTNLKYLDLKVTSM----------------KNLTWLDISNNKIEGSIPG 195 (325)
Q Consensus 138 ~l-~~L~~L~Ls~N~l~~~~p~~~----~~-l~~L~~L~l~~n~l----------------~~L~~L~Ls~n~l~~~~p~ 195 (325)
.+ ++|++|++++|++++..+..+ .. .++|++|++++|.+ ++|++|++++|++++..+.
T Consensus 106 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 185 (362)
T 3goz_A 106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA 185 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred hCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH
Confidence 33 678888888888876555443 33 25788888887732 2788888888888766654
Q ss_pred hhh----CC-CCCCEEECCCCcCCCC----CCCcccC-CCCCcEEEccCCCCCchHH
Q 045233 196 ELT----EL-SRPDCLSLSANKLSGP----VPFSNKQ-LSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 196 ~~~----~l-~~L~~L~L~~N~l~~~----~p~~~~~-l~~L~~L~l~~N~~~~~~~ 242 (325)
.+. .. ++|+.|+|++|.+++. ++..+.. .++|+.|++++|.+.....
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 433 34 4788888888887753 3334444 3478888888887765433
No 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=6.4e-15 Score=120.92 Aligned_cols=138 Identities=19% Similarity=0.221 Sum_probs=109.0
Q ss_pred CCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC
Q 045233 47 SDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN 126 (325)
Q Consensus 47 ~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n 126 (325)
.+.|.|.++.| +.+.+..++ ....++|+.|++ ++|.+.+..+..+..+++|++|++++|
T Consensus 4 ~C~C~~~~l~~----------------~~~~l~~~p---~~~~~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 4 RCSCSGTEIRC----------------NSKGLTSVP---TGIPSSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TCEEETTEEEC----------------CSSCCSSCC---TTCCTTCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCEeCCCEEEe----------------cCCCCccCC---CCCCCCCcEEEe--CCCcccEeCHHHhcCcccccEEECCCC
Confidence 45577777666 344444443 334579999999 899998877777899999999999999
Q ss_pred CCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEE
Q 045233 127 RLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCL 206 (325)
Q Consensus 127 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 206 (325)
.+++..+..|..+++|++|++++|++++..+..+..+++| ++|++++|++++..+..+..+++|+.|
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-------------~~L~l~~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL-------------KELALDTNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------CEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc-------------CEEECcCCcceEeCHHHhcCCcccCEE
Confidence 9997766778999999999999999996666666666555 555777788886666677889999999
Q ss_pred ECCCCcCCCCCC
Q 045233 207 SLSANKLSGPVP 218 (325)
Q Consensus 207 ~L~~N~l~~~~p 218 (325)
++++|++++..|
T Consensus 130 ~l~~N~~~~~~~ 141 (177)
T 2o6r_A 130 WLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCBCCCHH
T ss_pred EecCCCeeccCc
Confidence 999999986543
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.2e-15 Score=148.69 Aligned_cols=143 Identities=28% Similarity=0.328 Sum_probs=126.6
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 165 (325)
+..+++|+.|++ ++|.+... | .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++ +| .+..+++
T Consensus 39 ~~~L~~L~~L~l--~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIA--NNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBC--TTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTT
T ss_pred hhcCCCCCEEEC--cCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCC
Confidence 567889999999 88887654 3 58899999999999999996544 8999999999999999984 44 6899999
Q ss_pred CcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233 166 LKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236 (325)
Q Consensus 166 L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 236 (325)
|+.|++++| .+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.
T Consensus 111 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999999 568899999999999965 678999999999999999997766 8999999999999999
Q ss_pred CCch
Q 045233 237 GLGS 240 (325)
Q Consensus 237 ~~~~ 240 (325)
+...
T Consensus 187 i~~l 190 (605)
T 1m9s_A 187 ISDL 190 (605)
T ss_dssp CCBC
T ss_pred CCCC
Confidence 9864
No 110
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=126.15 Aligned_cols=111 Identities=30% Similarity=0.382 Sum_probs=96.0
Q ss_pred CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcE
Q 045233 89 FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKY 168 (325)
Q Consensus 89 l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 168 (325)
.++|++|++ ++|.+. .+|..+..+++|++|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++
T Consensus 30 ~~~l~~L~L--~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 30 PRDVTELYL--DGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp CTTCCEEEC--CSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCCCCEEEC--CCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence 368999999 888887 67789999999999999999999888888999999999999999999777777877666554
Q ss_pred EEcCcCCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233 169 LDLKVTSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 169 L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 215 (325)
|+|++|.++...+..|..+++|+.|++++|++..
T Consensus 107 -------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 107 -------------LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp -------------EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred -------------EECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 5677788886666778999999999999999874
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=3.8e-17 Score=150.82 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=97.9
Q ss_pred cCCCCCCCEEEeccccCcCCCCCccc----ccCC---------CcCCEEecccCCCC-CCCc---hhhcCCcccceeecc
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSD----ISAL---------SKLQLLDLSLNRLS-GTIP---SNIGNLRNLVHLDLG 148 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~----l~~l---------~~L~~L~Ls~n~l~-~~~p---~~~~~l~~L~~L~Ls 148 (325)
+..+++|++|++ ++|.+....+.. +..+ ++|++|++++|+++ ..++ ..+..+++|++|+++
T Consensus 118 l~~~~~L~~L~L--~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 195 (386)
T 2ca6_A 118 LSKHTPLEHLYL--HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195 (386)
T ss_dssp HHHCTTCCEEEC--CSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHhCCCCCEEEC--cCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc
Confidence 455677777777 666665332222 2223 67777777777776 3333 355566777777777
Q ss_pred cCcCCC-----cCchhccCCCCCcEEEcCcCC---------------CCCCcEEEccCCcCCCC----CchhhhC--CCC
Q 045233 149 NNNLTG-----PIPSTLARLTNLKYLDLKVTS---------------MKNLTWLDISNNKIEGS----IPGELTE--LSR 202 (325)
Q Consensus 149 ~N~l~~-----~~p~~~~~l~~L~~L~l~~n~---------------l~~L~~L~Ls~n~l~~~----~p~~~~~--l~~ 202 (325)
+|+++. ..|..+..+++|+.|++++|. +++|++|+|++|.+++. +|..+.. +++
T Consensus 196 ~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~ 275 (386)
T 2ca6_A 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275 (386)
T ss_dssp SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence 777762 233366677777777777763 35677777777777654 4455533 677
Q ss_pred CCEEECCCCcCCC----CCCCcc-cCCCCCcEEEccCCCCCchHH
Q 045233 203 PDCLSLSANKLSG----PVPFSN-KQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 203 L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~l~~N~~~~~~~ 242 (325)
|+.|+|++|.+++ .+|..+ .++++|+.|++++|++.+...
T Consensus 276 L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred eEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7777777777775 355555 456777777777777765543
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=9.5e-16 Score=152.59 Aligned_cols=181 Identities=19% Similarity=0.133 Sum_probs=93.0
Q ss_pred CCCCCCCCCCCCCCCCccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCE-----EEeccccCcCCCCC
Q 045233 34 GWWNSSFWMANYSSDHCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLES-----LRIQAYYYGFTGSI 108 (325)
Q Consensus 34 ~~~~~~~W~~~~~~~~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~-----L~l~~~~n~~~~~~ 108 (325)
+|+....|. ......+.|.++.++. ++++.+++....+.. .+.. +....+|+. +++ ..|.+. ..
T Consensus 148 ~~~~~~~~~-~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~-----~~~~-~l~~l~Ls~~~i~~~~~--~~n~~~-~~ 216 (727)
T 4b8c_D 148 KTAKKQQPT-GDSTPSGTATNSAVST-PLTPKIELFANGKDE-----ANQA-LLQHKKLSQYSIDEDDD--IENRMV-MP 216 (727)
T ss_dssp HTTC----------------------------------------------------------------------------
T ss_pred cCcccCCCc-CCCCccccCCCceecC-CccceEEeeCCCCCc-----chhh-HhhcCccCcccccCccc--ccccee-cC
Confidence 455566663 2334566888877755 567777665433222 2111 111122222 222 233333 45
Q ss_pred cccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCc
Q 045233 109 PSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNK 188 (325)
Q Consensus 109 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~ 188 (325)
|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++ |+|++|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~-------------L~Ls~N~ 281 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRV-------------LDLSHNR 281 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCE-------------EECTTSC
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCE-------------EeCcCCc
Confidence 677888999999999999998 77877888999999999999998 78888877666555 4666677
Q ss_pred CCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 189 IEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 189 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
|+ .+|..++.+++|++|+|++|.|+ .+|..++.+++|+.|+|++|++.+...
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 77 66777888888888888888887 667778888888888888888876543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=1.3e-15 Score=133.47 Aligned_cols=136 Identities=27% Similarity=0.410 Sum_probs=114.9
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
++.++++.+.+..++ .+..+++|+.|++ ++|.+.+..+ +..+++|++|++++|++++ +|. +.. ++|++|++
T Consensus 43 L~~L~l~~n~i~~l~--~l~~l~~L~~L~L--~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L 113 (263)
T 1xeu_A 43 VQNFNGDNSNIQSLA--GMQFFTNLKELHL--SHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFL 113 (263)
T ss_dssp CSEEECTTSCCCCCT--TGGGCTTCCEEEC--CSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEEC
T ss_pred CcEEECcCCCcccch--HHhhCCCCCEEEC--CCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEc
Confidence 334555566666666 5788999999999 8999887654 9999999999999999995 444 333 89999999
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCC
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGP 216 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 216 (325)
++|++++ ++ .+..+++|+.|++++| .+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999995 44 5999999999999999 567899999999999976 6789999999999999999865
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=1.6e-16 Score=145.44 Aligned_cols=169 Identities=18% Similarity=0.152 Sum_probs=132.1
Q ss_pred cCCccccccCccccCCCCCCCEEEeccccCcCCCCCc----ccccCCC-cCCEEecccCCCCCCCchhhcCC-----ccc
Q 045233 73 VDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIP----SDISALS-KLQLLDLSLNRLSGTIPSNIGNL-----RNL 142 (325)
Q Consensus 73 ~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L 142 (325)
++.+.+....+..+...++|++|++ ++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~L--s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDL--SLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEEC--TTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccchHHHHHHHhCCCCceEEEc--cCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3344444333333455566999999 8999988777 6788888 99999999999998777777765 999
Q ss_pred ceeecccCcCCCcCchh----ccCC-CCCcEEEcCcCC----------------CCCCcEEEccCCcCCCCCc----hhh
Q 045233 143 VHLDLGNNNLTGPIPST----LARL-TNLKYLDLKVTS----------------MKNLTWLDISNNKIEGSIP----GEL 197 (325)
Q Consensus 143 ~~L~Ls~N~l~~~~p~~----~~~l-~~L~~L~l~~n~----------------l~~L~~L~Ls~n~l~~~~p----~~~ 197 (325)
++|+|++|++++..+.. +..+ ++|++|++++|. .++|++|++++|.+++..+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999999777764 4444 899999999992 3599999999999996544 444
Q ss_pred hCCC-CCCEEECCCCcCCCCCCCcc----cCC-CCCcEEEccCCCCCchHHH
Q 045233 198 TELS-RPDCLSLSANKLSGPVPFSN----KQL-STMYIVRLSPNKGLGSNFI 243 (325)
Q Consensus 198 ~~l~-~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~l~~N~~~~~~~~ 243 (325)
..++ +|++|++++|++++..+..+ ... ++|+.|++++|.+......
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~ 214 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA 214 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH
Confidence 5665 99999999999997766444 344 6999999999998764443
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=9.5e-15 Score=137.79 Aligned_cols=133 Identities=25% Similarity=0.317 Sum_probs=100.5
Q ss_pred CCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEE
Q 045233 90 PNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYL 169 (325)
Q Consensus 90 ~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 169 (325)
++|++|++ ++|.+.+ +| .+.++++|++|++++|++++ +|..+ ++|++|++++|++++ +| .+..+++|++|
T Consensus 131 ~~L~~L~L--~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGV--SNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEEC--CSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred CCCCEEEC--cCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence 68888888 7888876 66 58888999999999998884 55433 588899999999885 66 58889999999
Q ss_pred EcCcCCC-------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 170 DLKVTSM-------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 170 ~l~~n~l-------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
++++|.+ ++|++|++++|.++ .+| .+..+++|+.|++++|++++ +|.. .++|+.|++++|.+.
T Consensus 201 ~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 201 YADNNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred ECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 9998854 36888999999888 666 47888888888888888875 3332 244445555544443
No 116
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=8.2e-15 Score=143.04 Aligned_cols=74 Identities=28% Similarity=0.208 Sum_probs=58.1
Q ss_pred CCCcEEEcCcCC-------CCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCC
Q 045233 164 TNLKYLDLKVTS-------MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNK 236 (325)
Q Consensus 164 ~~L~~L~l~~n~-------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 236 (325)
++|+.|++++|. +++|+.|++++|+++ .+|. .+++|+.|++++|+|+ .+|..+..+++|+.|++++|+
T Consensus 221 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 556667776663 346777888888777 4554 5678999999999999 678889999999999999999
Q ss_pred CCchHH
Q 045233 237 GLGSNF 242 (325)
Q Consensus 237 ~~~~~~ 242 (325)
+.+...
T Consensus 296 l~~~~~ 301 (622)
T 3g06_A 296 LSERTL 301 (622)
T ss_dssp CCHHHH
T ss_pred CCCcCH
Confidence 986544
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=3.6e-15 Score=121.33 Aligned_cols=135 Identities=27% Similarity=0.299 Sum_probs=106.3
Q ss_pred CCeeEeeccccccCCcccc--ccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcC
Q 045233 61 GSIIGLNLSWYDVDLNAQA--QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGN 138 (325)
Q Consensus 61 ~~v~~l~l~~l~~~~n~~~--~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 138 (325)
..++.++++ .|.+. .++.. +..+++|+.|++ ++|.+.+. ..+..+++|++|++++|.+++.+|..+..
T Consensus 24 ~~L~~L~l~-----~n~l~~~~i~~~-~~~l~~L~~L~l--~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLD-----NCKSNDGKIEGL-TAEFVNLEFLSL--INVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TSCSEEECC-----SCBCBTTBCSSC-CGGGGGCCEEEE--ESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred ccCCEEECC-----CCCCChhhHHHH-HHhCCCCCEEeC--cCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 345555555 44444 44443 788999999999 89998876 77899999999999999999778888888
Q ss_pred CcccceeecccCcCCCcCc-hhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCc---hhhhCCCCCCEEECCCCcCC
Q 045233 139 LRNLVHLDLGNNNLTGPIP-STLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIP---GELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 139 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~ 214 (325)
+++|++|++++|++++..+ ..+..+++ |++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~-------------L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLEC-------------LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSC-------------CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCC-------------CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999999999995322 56666555 5556777888886555 58899999999999999987
Q ss_pred CCCCC
Q 045233 215 GPVPF 219 (325)
Q Consensus 215 ~~~p~ 219 (325)
.+|.
T Consensus 161 -~~~~ 164 (168)
T 2ell_A 161 -EAPD 164 (168)
T ss_dssp -BCCS
T ss_pred -hccc
Confidence 4444
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=2.2e-15 Score=150.03 Aligned_cols=134 Identities=28% Similarity=0.318 Sum_probs=100.5
Q ss_pred cCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhc
Q 045233 81 LSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTL 160 (325)
Q Consensus 81 l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 160 (325)
+....+..++.|+.|+| ++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|
T Consensus 215 ~~~~~~~~l~~L~~L~L--s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 289 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDL--SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL 289 (727)
T ss_dssp -------CCCCCCEEEC--TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG
T ss_pred cChhhhccCCCCcEEEC--CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh
Confidence 34456888899999999 888877 67777778999999999999998 88888999999999999999999 789889
Q ss_pred cCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCCCCchhhhCCCC-CCEEECCCCcCCCCCCC
Q 045233 161 ARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEGSIPGELTELSR-PDCLSLSANKLSGPVPF 219 (325)
Q Consensus 161 ~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~ 219 (325)
..+++|++|+|++| .+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 99999999988888 4567888888888888877776644311 11244555555554444
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=1.3e-14 Score=136.90 Aligned_cols=132 Identities=24% Similarity=0.304 Sum_probs=62.2
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 165 (325)
+..+++|++|++ ++|.+.+ +|.. +++|++|++++|.+++ +|.. .++|++|++++|++++ +|.. .++
T Consensus 233 ~~~l~~L~~L~l--~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~ 298 (454)
T 1jl5_A 233 LQNLPFLTTIYA--DNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPN 298 (454)
T ss_dssp CTTCTTCCEEEC--CSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTT
T ss_pred cCCCCCCCEEEC--CCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCc
Confidence 445555555555 4555443 2221 2445555555555553 3321 2456666666666654 1110 134
Q ss_pred CcEEEcCcCCC-------CCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 166 LKYLDLKVTSM-------KNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 166 L~~L~l~~n~l-------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
|++|++++|.+ ++|++|++++|++++ +|.. +++|+.|++++|++++ +|. .+++|+.|++++|++.
T Consensus 299 L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 299 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp CCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCC
Confidence 44444444422 245555555555553 3322 3455555555555552 333 2445555555555554
Q ss_pred c
Q 045233 239 G 239 (325)
Q Consensus 239 ~ 239 (325)
+
T Consensus 371 ~ 371 (454)
T 1jl5_A 371 E 371 (454)
T ss_dssp S
T ss_pred c
Confidence 4
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=3.5e-15 Score=145.67 Aligned_cols=88 Identities=23% Similarity=0.229 Sum_probs=44.9
Q ss_pred cccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233 69 SWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG 148 (325)
Q Consensus 69 ~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 148 (325)
..++++.|.+..++. .+++|++|++ ++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 64 ~~L~L~~N~l~~lp~----~l~~L~~L~L--s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 64 TTLVIPDNNLTSLPA----LPPELRTLEV--SGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp SEEEECSCCCSCCCC----CCTTCCEEEE--CSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred cEEEecCCCCCCCCC----cCCCCCEEEc--CCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 334444454444443 3556666666 5565553 333 45666666666666653 333 34455555555
Q ss_pred cCcCCCcCchhccCCCCCcEEEcCcC
Q 045233 149 NNNLTGPIPSTLARLTNLKYLDLKVT 174 (325)
Q Consensus 149 ~N~l~~~~p~~~~~l~~L~~L~l~~n 174 (325)
+|+++ .+|.. +++|++|++++|
T Consensus 130 ~N~l~-~lp~~---l~~L~~L~Ls~N 151 (622)
T 3g06_A 130 GNQLT-SLPVL---PPGLQELSVSDN 151 (622)
T ss_dssp SSCCS-CCCCC---CTTCCEEECCSS
T ss_pred CCCCC-cCCCC---CCCCCEEECcCC
Confidence 55555 23332 245555555555
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=1e-14 Score=116.13 Aligned_cols=122 Identities=27% Similarity=0.301 Sum_probs=97.5
Q ss_pred cccCCcccc--ccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233 71 YDVDLNAQA--QLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG 148 (325)
Q Consensus 71 l~~~~n~~~--~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 148 (325)
++++.+.+. .++. .+..+++|+.|++ ++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 22 L~l~~n~l~~~~~~~-~~~~l~~L~~L~l--~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 22 LVLDNSRSNEGKLEG-LTDEFEELEFLST--INVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp EECTTCBCBTTBCCS-CCTTCTTCCEEEC--TTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred EEccCCcCChhHHHH-HHhhcCCCcEEEC--cCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 334445544 4443 5788999999999 89998876 778999999999999999997789988899999999999
Q ss_pred cCcCCCc-CchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCc---hhhhCCCCCCEEECCC
Q 045233 149 NNNLTGP-IPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIP---GELTELSRPDCLSLSA 210 (325)
Q Consensus 149 ~N~l~~~-~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~ 210 (325)
+|++++. .|..+..+++| ++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L-------------~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENL-------------KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTC-------------CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCC-------------CEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999953 23667666554 556777888886665 5789999999999864
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=2e-16 Score=153.06 Aligned_cols=147 Identities=19% Similarity=0.166 Sum_probs=107.9
Q ss_pred CCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-------------CCCCCchhhcCC--------------
Q 045233 87 SCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-------------LSGTIPSNIGNL-------------- 139 (325)
Q Consensus 87 ~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~l-------------- 139 (325)
..+++|+.|++ +.|.+. .+|+.++++++|+.|++++|. +.+..|..++.+
T Consensus 346 ~~~~~L~~L~L--s~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCEL--SVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCC--CHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccC--ChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 45666666666 566554 456666666666666665443 223333332221
Q ss_pred ------------------cccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCCC
Q 045233 140 ------------------RNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIEG 191 (325)
Q Consensus 140 ------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~~ 191 (325)
..|+.|+|++|++++ +|. +..+++|+.|++++| .+++|+.|+|++|++++
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC
Confidence 136678888888884 666 888888888888888 45688899999999995
Q ss_pred CCchhhhCCCCCCEEECCCCcCCCCC-CCcccCCCCCcEEEccCCCCCch
Q 045233 192 SIPGELTELSRPDCLSLSANKLSGPV-PFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 192 ~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
+| .++.+++|+.|+|++|+|++.. |..++.+++|+.|++++|++.+.
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 67 8899999999999999999876 88899999999999999987653
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=6.8e-15 Score=120.74 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=104.0
Q ss_pred ccCCCCCCCEEEeccccCcCCCCCcccccCC-CcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCC
Q 045233 85 NFSCFPNLESLRIQAYYYGFTGSIPSDISAL-SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARL 163 (325)
Q Consensus 85 ~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 163 (325)
.+..+++|+.|++ ++|.+.. +|. +..+ ++|++|++++|.+++. +.+..+++|++|++++|++++..|..+..+
T Consensus 14 ~~~~~~~L~~L~l--~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 14 QYTNAVRDRELDL--RGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EEECTTSCEEEEC--TTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred hcCCcCCceEEEe--eCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 3566889999999 8888885 454 4444 4999999999999854 678899999999999999995544545666
Q ss_pred CCCcEEEcCcCCCCCCcEEEccCCcCCCCCch--hhhCCCCCCEEECCCCcCCCCCCC----cccCCCCCcEEEccCCCC
Q 045233 164 TNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG--ELTELSRPDCLSLSANKLSGPVPF----SNKQLSTMYIVRLSPNKG 237 (325)
Q Consensus 164 ~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~l~~N~~ 237 (325)
++|++ |++++|.++ .+|. .+..+++|+.|++++|+++. +|. .+..+++|+.|++++|..
T Consensus 88 ~~L~~-------------L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTE-------------LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCE-------------EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCE-------------EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 66555 566667775 4554 78899999999999999984 455 388999999999999974
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=2e-17 Score=138.58 Aligned_cols=113 Identities=24% Similarity=0.285 Sum_probs=50.4
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCC
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTN 165 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 165 (325)
+..+++|++|++ ++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..++
T Consensus 44 ~~~l~~L~~L~l--s~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~- 115 (198)
T 1ds9_A 44 LSTLKACKHLAL--STNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV- 115 (198)
T ss_dssp HHHTTTCSEEEC--SEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH-
T ss_pred HhcCCCCCEEEC--CCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC-
Confidence 344444444444 4444443 33 4444444444444444444 334444444444444444444442 22 233222
Q ss_pred CcEEEcCcCCCCCCcEEEccCCcCCCCCc-hhhhCCCCCCEEECCCCcCCCCCC
Q 045233 166 LKYLDLKVTSMKNLTWLDISNNKIEGSIP-GELTELSRPDCLSLSANKLSGPVP 218 (325)
Q Consensus 166 L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p 218 (325)
+|++|++++|++++..+ ..+..+++|++|++++|++++.+|
T Consensus 116 ------------~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 116 ------------NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp ------------HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred ------------CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 23334444444442211 345555566666666665554433
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=4.1e-14 Score=115.51 Aligned_cols=108 Identities=26% Similarity=0.251 Sum_probs=84.8
Q ss_pred CCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhh
Q 045233 118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGEL 197 (325)
Q Consensus 118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~ 197 (325)
.+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|..+++|+ +|+|++|++++..+..|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~-------------~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLT-------------RLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCS-------------EEECCSSCCCCCCTTTT
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCC-------------EEECCCCCcCccChhhc
Confidence 467888888887 5665553 7788888888888876677777665544 45667777776666778
Q ss_pred hCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchH
Q 045233 198 TELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSN 241 (325)
Q Consensus 198 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~ 241 (325)
..+++|+.|+|++|+|++..+..+..+++|+.|++++|++.|..
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 88999999999999999777777899999999999999998764
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=3.5e-16 Score=147.34 Aligned_cols=149 Identities=19% Similarity=0.127 Sum_probs=92.8
Q ss_pred CCCCCEEEeccccCcCCCC----CcccccCCCcCCEEecccCCCCCCC-----chhhcCCcccceeecccCcCCCc----
Q 045233 89 FPNLESLRIQAYYYGFTGS----IPSDISALSKLQLLDLSLNRLSGTI-----PSNIGNLRNLVHLDLGNNNLTGP---- 155 (325)
Q Consensus 89 l~~L~~L~l~~~~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~---- 155 (325)
.++|++|++ ++|.+.+. ++..+..+++|++|++++|.++... +..+..+++|++|++++|+++..
T Consensus 198 ~~~L~~L~L--~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 275 (461)
T 1z7x_W 198 PCQLEALKL--ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275 (461)
T ss_dssp CCCCCEEEC--TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred CCCceEEEc--cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHH
Confidence 557777777 67776653 4555666777777777777766322 22223467777777777777743
Q ss_pred CchhccCCCCCcEEEcCcCCC----------------CCCcEEEccCCcCCCC----CchhhhCCCCCCEEECCCCcCCC
Q 045233 156 IPSTLARLTNLKYLDLKVTSM----------------KNLTWLDISNNKIEGS----IPGELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 156 ~p~~~~~l~~L~~L~l~~n~l----------------~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~ 215 (325)
++..+..+++|++|++++|.+ ++|++|++++|.+++. ++..+..+++|+.|++++|.+++
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 455666677777777777732 4677777777776654 34555566667777777766654
Q ss_pred CCCCcccC-----CCCCcEEEccCCCCCc
Q 045233 216 PVPFSNKQ-----LSTMYIVRLSPNKGLG 239 (325)
Q Consensus 216 ~~p~~~~~-----l~~L~~L~l~~N~~~~ 239 (325)
..+..+.. .++|+.|++++|.+..
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 33322221 4566666666666554
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=1.2e-15 Score=143.79 Aligned_cols=122 Identities=18% Similarity=0.173 Sum_probs=52.9
Q ss_pred CcCCEEecccCCCCCC----CchhhcCCcccceeecccCcCCCcC-----chhccCCCCCcEEEcCcC------------
Q 045233 116 SKLQLLDLSLNRLSGT----IPSNIGNLRNLVHLDLGNNNLTGPI-----PSTLARLTNLKYLDLKVT------------ 174 (325)
Q Consensus 116 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~l~~n------------ 174 (325)
++|++|++++|.++.. ++..+..+++|++|++++|++++.. +..+..+++|++|++++|
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 3455555555554432 3444444455555555555444221 111223445555555544
Q ss_pred ---CCCCCcEEEccCCcCCCCCchhhhC-----CCCCCEEECCCCcCCCC----CCCcccCCCCCcEEEccCCCC
Q 045233 175 ---SMKNLTWLDISNNKIEGSIPGELTE-----LSRPDCLSLSANKLSGP----VPFSNKQLSTMYIVRLSPNKG 237 (325)
Q Consensus 175 ---~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~ 237 (325)
.+++|++|++++|.+++..+..+.. .++|+.|++++|.+++. ++..+..+++|+.|++++|.+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 1344555555555444332222221 13455555555554432 233334444555555555544
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=1e-13 Score=113.65 Aligned_cols=107 Identities=24% Similarity=0.262 Sum_probs=76.5
Q ss_pred CEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhh
Q 045233 119 QLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELT 198 (325)
Q Consensus 119 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~ 198 (325)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++ |+|++|++++..+..|.
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-------------L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQ-------------LYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCE-------------EECCSSCCCCCCTTTTT
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCE-------------EECCCCCCCccChhHhC
Confidence 56677777775 5565443 67777777777777666666666555444 45566666655555667
Q ss_pred CCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchH
Q 045233 199 ELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSN 241 (325)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~ 241 (325)
.+++|+.|+|++|+|++..+..+..+++|+.|++++|++.|..
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 8888888888888888666666888888999999999888764
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=8.5e-14 Score=134.68 Aligned_cols=113 Identities=25% Similarity=0.318 Sum_probs=81.9
Q ss_pred cCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC---------CCCCCcEEEccCC
Q 045233 117 KLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT---------SMKNLTWLDISNN 187 (325)
Q Consensus 117 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n 187 (325)
.|+.|++++|.+++ +|. ++.+++|+.|+|++|+++ .+|..++.+++|+.|++++| .+++|+.|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC
Confidence 35666666666663 444 666666666666666666 55666666666666666665 3567788899999
Q ss_pred cCCCCC-chhhhCCCCCCEEECCCCcCCCCCCCc---ccCCCCCcEEEc
Q 045233 188 KIEGSI-PGELTELSRPDCLSLSANKLSGPVPFS---NKQLSTMYIVRL 232 (325)
Q Consensus 188 ~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~l 232 (325)
++++.. |..+..+++|+.|+|++|++++.+|.. +..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999876 999999999999999999999765532 344788888864
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=7.7e-14 Score=127.05 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=116.8
Q ss_pred ccccccCCccc-cccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceee
Q 045233 68 LSWYDVDLNAQ-AQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLD 146 (325)
Q Consensus 68 l~~l~~~~n~~-~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 146 (325)
|+.++++.|.+ ..++...|.++++++++... ..|.+....|..|..+++|++|++++|.+....+..+....++..|+
T Consensus 56 L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~-~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 134 (350)
T 4ay9_X 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIE-KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134 (350)
T ss_dssp CCEEEEECCTTCCEECTTSBCSCTTCCEEEEE-EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEE
T ss_pred CCEEECcCCCCCCccChhHhhcchhhhhhhcc-cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhh
Confidence 44556667765 44666678889888764441 66888888888899999999999999999966666666777788888
Q ss_pred ccc-CcCCCcCchhccCCC-CCcEEEcCcCCC----------CCCcEEEccC-CcCCCCCchhhhCCCCCCEEECCCCcC
Q 045233 147 LGN-NNLTGPIPSTLARLT-NLKYLDLKVTSM----------KNLTWLDISN-NKIEGSIPGELTELSRPDCLSLSANKL 213 (325)
Q Consensus 147 Ls~-N~l~~~~p~~~~~l~-~L~~L~l~~n~l----------~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~N~l 213 (325)
+.+ |++....+..|..+. .++.|++++|.+ .+|+.+++++ |.++...++.|.++++|+.|++++|+|
T Consensus 135 l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp EESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred hccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 865 567644455666664 688899998833 4678888875 566644446788999999999999999
Q ss_pred CCCCCCcccCCCCCc
Q 045233 214 SGPVPFSNKQLSTMY 228 (325)
Q Consensus 214 ~~~~p~~~~~l~~L~ 228 (325)
+...+..+.++++|+
T Consensus 215 ~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 215 HSLPSYGLENLKKLR 229 (350)
T ss_dssp CCCCSSSCTTCCEEE
T ss_pred CccChhhhccchHhh
Confidence 855444444444333
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=2.9e-13 Score=110.43 Aligned_cols=86 Identities=28% Similarity=0.347 Sum_probs=39.7
Q ss_pred CcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCch
Q 045233 116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG 195 (325)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~ 195 (325)
++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++| ++|+|++|++++..+.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L-------------~~L~L~~N~l~~~~~~ 96 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL-------------TQLSLNDNQLKSIPRG 96 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-------------CEEECCSSCCCCCCTT
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC-------------CEEECCCCccCEeCHH
Confidence 344444445554444444444445555555555555543333333333332 2233344444433344
Q ss_pred hhhCCCCCCEEECCCCcCC
Q 045233 196 ELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~ 214 (325)
.|..+++|+.|+|++|+++
T Consensus 97 ~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 97 AFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTTTCTTCCEEECCSSCBC
T ss_pred HhcCCCCCCEEEeCCCCCC
Confidence 4555555555555555555
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=6.6e-16 Score=129.30 Aligned_cols=126 Identities=21% Similarity=0.182 Sum_probs=96.8
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
|+.++++.|.+..++ .+..+++|+.|++ ++|.+. .+|..+..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus 50 L~~L~ls~n~l~~l~--~~~~l~~L~~L~l--~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 50 CKHLALSTNNIEKIS--SLSGMENLRILSL--GRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp CSEEECSEEEESCCC--CHHHHTTCCEEEE--EEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCEEECCCCCCcccc--ccccCCCCCEEEC--CCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 445566677777766 6888999999999 888887 577778888999999999999995 55 6889999999999
Q ss_pred ccCcCCCcCc-hhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCch----------hhhCCCCCCEEECCCCcCCC
Q 045233 148 GNNNLTGPIP-STLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG----------ELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 148 s~N~l~~~~p-~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~~L~~L~L~~N~l~~ 215 (325)
++|++++..+ ..+..+++|+ +|++++|.+++.+|. .+..+++|+.|+ +|.++.
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~-------------~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLE-------------DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCS-------------EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCcCCchhHHHHHhcCCCCC-------------EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999994322 3566665554 556677777655543 377888999887 676663
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=7.8e-13 Score=108.31 Aligned_cols=104 Identities=25% Similarity=0.312 Sum_probs=67.8
Q ss_pred EEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCc
Q 045233 94 SLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKV 173 (325)
Q Consensus 94 ~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 173 (325)
.+++ ++|.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|
T Consensus 16 ~l~~--~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L------- 83 (174)
T 2r9u_A 16 LVNC--QNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL------- 83 (174)
T ss_dssp EEEC--CSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred EEEe--CCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh-------
Confidence 4445 455443 3444443 677777777777776667777777777777777777775444445555444
Q ss_pred CCCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCC
Q 045233 174 TSMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSG 215 (325)
Q Consensus 174 n~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 215 (325)
++|+|++|++++..+..+..+++|+.|+|++|++..
T Consensus 84 ------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 84 ------TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ------CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ------hEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 444556666665555567778888888888888773
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2e-13 Score=111.94 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=95.4
Q ss_pred ccccCCccccccCccccCCCC-CCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecc
Q 045233 70 WYDVDLNAQAQLSQLNFSCFP-NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLG 148 (325)
Q Consensus 70 ~l~~~~n~~~~l~~~~~~~l~-~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 148 (325)
.++++.|.+..++. +..+. +|+.|++ ++|.+.+. +.+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 23 ~L~l~~n~l~~i~~--~~~~~~~L~~L~L--s~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 23 ELDLRGYKIPVIEN--LGATLDQFDAIDF--SDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp EEECTTSCCCSCCC--GGGGTTCCSEEEC--CSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred EEEeeCCCCchhHH--hhhcCCCCCEEEC--CCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 34444555555532 44444 9999999 89998875 678999999999999999996544556999999999999
Q ss_pred cCcCCCcCch--hccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCch----hhhCCCCCCEEECCCCcCC
Q 045233 149 NNNLTGPIPS--TLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPG----ELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 149 ~N~l~~~~p~--~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~ 214 (325)
+|+++ .+|. .+..+++| +.|++++|.++ .+|. .+..+++|+.|++++|.+.
T Consensus 97 ~N~i~-~~~~~~~l~~l~~L-------------~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 97 NNSLV-ELGDLDPLASLKSL-------------TYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCCCC-CGGGGGGGGGCTTC-------------CEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCcCC-cchhhHhhhcCCCC-------------CEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99997 5665 56655554 55667777777 4455 4889999999999999865
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=8.4e-13 Score=119.08 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=36.6
Q ss_pred ccCccccCC--------CCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCC
Q 045233 80 QLSQLNFSC--------FPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNL 139 (325)
Q Consensus 80 ~l~~~~~~~--------l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 139 (325)
.++...|.+ +++|+.|++ .. .+...-+..|.++++|++|++++|.+....+..|.++
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L--~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~ 147 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVIL--SE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADS 147 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CB--CT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTT
T ss_pred ccCHHHhcccccccccccCCCcEEEC--Cc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCC
Confidence 455556777 888888888 55 5665556677888888888888877643333333333
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=2.7e-12 Score=116.41 Aligned_cols=104 Identities=24% Similarity=0.172 Sum_probs=57.3
Q ss_pred EecccC-CCCCCCchhhcCCcccceeeccc-CcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCCCchhhh
Q 045233 121 LDLSLN-RLSGTIPSNIGNLRNLVHLDLGN-NNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGSIPGELT 198 (325)
Q Consensus 121 L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~~p~~~~ 198 (325)
++++++ .++ .+|. +..+++|++|+|++ |++++..|..|..+++|+ .|+|++|+|++..|..|.
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~-------------~L~l~~N~l~~~~~~~~~ 77 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELR-------------NLTIVKSGLRFVAPDAFH 77 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS-------------EEECCSSCCCEECTTGGG
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCC-------------EEECCCCccceeCHHHhc
Confidence 455554 555 3455 55555566666654 555544444554443333 334455555555555666
Q ss_pred CCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCch
Q 045233 199 ELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGS 240 (325)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~ 240 (325)
++++|+.|+|++|+|++..+..+..++ |+.|++.+|++.|.
T Consensus 78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 666666666666666654444444444 66666666666654
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=2.9e-12 Score=116.24 Aligned_cols=108 Identities=22% Similarity=0.195 Sum_probs=88.6
Q ss_pred CccceeeEeCCCCCeeEeeccccccCCccccccCccccCCCCCCCEEEecccc-CcCCCCCcccccCCCcCCEEecccCC
Q 045233 49 HCKWIGITCNSAGSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYY-YGFTGSIPSDISALSKLQLLDLSLNR 127 (325)
Q Consensus 49 ~C~w~gv~c~~~~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~-n~~~~~~p~~l~~l~~L~~L~Ls~n~ 127 (325)
.|.|..+.|... |.+..++. +..+++|+.|+| ++ |.+.+..+..|.++++|++|+|++|+
T Consensus 7 ~C~~~~v~~~~~---------------n~l~~ip~--l~~~~~L~~L~l--~~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 67 (347)
T 2ifg_A 7 PHGSSGLRCTRD---------------GALDSLHH--LPGAENLTELYI--ENQQHLQHLELRDLRGLGELRNLTIVKSG 67 (347)
T ss_dssp CSSSSCEECCSS---------------CCCTTTTT--SCSCSCCSEEEC--CSCSSCCEECGGGSCSCCCCSEEECCSSC
T ss_pred cccCCEEEcCCC---------------CCCCccCC--CCCCCCeeEEEc--cCCCCCCCcChhHhccccCCCEEECCCCc
Confidence 588888888542 13444565 788899999999 85 89988888899999999999999999
Q ss_pred CCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCC
Q 045233 128 LSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSM 176 (325)
Q Consensus 128 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l 176 (325)
|++..|..|.++++|++|+|++|+|++..+..+..++ |+.|++.+|.+
T Consensus 68 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred cceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 9988888999999999999999999965555565555 88888887744
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=1.1e-13 Score=127.16 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=26.0
Q ss_pred CCCcEEEccCCcCCCC----CchhhhCCCCCCEEECCCCcCCCC----CCCcccCCCCCcEEEccCCCCC
Q 045233 177 KNLTWLDISNNKIEGS----IPGELTELSRPDCLSLSANKLSGP----VPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 177 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
++|++|+|++|.+++. ++..+...++|+.|+|++|.|++. ++..+...++|+.|++++|++.
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3444444444444421 123333444455555555444421 1222233344445555554443
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=1.9e-12 Score=118.87 Aligned_cols=176 Identities=19% Similarity=0.136 Sum_probs=118.2
Q ss_pred CCeeEeeccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccc-cCCCcCCEEecccCCCCCCCchhh---
Q 045233 61 GSIIGLNLSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDI-SALSKLQLLDLSLNRLSGTIPSNI--- 136 (325)
Q Consensus 61 ~~v~~l~l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~--- 136 (325)
..++.+++++..++......+...-....++|++|++ ++|.+.......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L--s~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNL--ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEEC--TTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEe--cCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3466666665544433333333222234479999999 8888765433333 346789999999999985443444
Q ss_pred --cCCcccceeecccCcCCC----cCchhccCCCCCcEEEcCcC---------------CCCCCcEEEccCCcCCCC---
Q 045233 137 --GNLRNLVHLDLGNNNLTG----PIPSTLARLTNLKYLDLKVT---------------SMKNLTWLDISNNKIEGS--- 192 (325)
Q Consensus 137 --~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~n---------------~l~~L~~L~Ls~n~l~~~--- 192 (325)
...++|++|+|++|.++. .++..+..+++|++|++++| ..++|+.|+|++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 346889999999999974 24455678999999999999 346899999999999864
Q ss_pred -CchhhhCCCCCCEEECCCCcCCCCCCCcccCC---C--CCcEEE--ccCCCCC
Q 045233 193 -IPGELTELSRPDCLSLSANKLSGPVPFSNKQL---S--TMYIVR--LSPNKGL 238 (325)
Q Consensus 193 -~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l---~--~L~~L~--l~~N~~~ 238 (325)
++..+...++|+.|+|++|.|++.....+..+ . .++.+. +..|.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 34456677999999999999985433333222 2 166666 6666654
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=5e-11 Score=107.37 Aligned_cols=142 Identities=18% Similarity=0.130 Sum_probs=110.7
Q ss_pred CCCCCEEEeccccCcCC--------------------CCCcccccC--------CCcCCEEecccCCCCCCCchhhcCCc
Q 045233 89 FPNLESLRIQAYYYGFT--------------------GSIPSDISA--------LSKLQLLDLSLNRLSGTIPSNIGNLR 140 (325)
Q Consensus 89 l~~L~~L~l~~~~n~~~--------------------~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~~~~l~ 140 (325)
+++|+.|+| ++|.+. ...+..|.+ +++|+.|++++ .++..-+.+|.+++
T Consensus 48 l~~L~~LdL--s~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDI--SNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEE--EEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred hccCeEEec--CcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence 677888888 677666 122345677 99999999999 88866677899999
Q ss_pred ccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------------------------------------------
Q 045233 141 NLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT---------------------------------------------- 174 (325)
Q Consensus 141 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n---------------------------------------------- 174 (325)
+|+.+++++|.++...+..|..+.++..+....+
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 9999999999987566667777766666654431
Q ss_pred -------------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCc-EEEccC
Q 045233 175 -------------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMY-IVRLSP 234 (325)
Q Consensus 175 -------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~l~~ 234 (325)
.+++|+.+++++|+++...+..|.++++|+.+++.+| ++...+.+|..+++|+ .+++.+
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 1678999999998888777778889999999999887 7766677888888898 888876
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.14 E-value=5.1e-12 Score=122.57 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=27.8
Q ss_pred CCCCcEEEccCCcCCC-CCchhhhCCCCCCEEECCCCcCCCC-CCCcccCCCCCcEEEccCCCCC
Q 045233 176 MKNLTWLDISNNKIEG-SIPGELTELSRPDCLSLSANKLSGP-VPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 176 l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
+++|++|++++|++++ .++..+.++++|+.|++++|.+++. ++.....+++|+.|++++|+++
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 4445555555555443 1223334445555555555554322 1222234445555555555443
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.04 E-value=4.4e-11 Score=115.95 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=69.6
Q ss_pred CCCCCCEEEeccccCcCCCC----CcccccCCCcCCEEecccCCCCC----CCchhhcCCcccceeecccCcCCCcCchh
Q 045233 88 CFPNLESLRIQAYYYGFTGS----IPSDISALSKLQLLDLSLNRLSG----TIPSNIGNLRNLVHLDLGNNNLTGPIPST 159 (325)
Q Consensus 88 ~l~~L~~L~l~~~~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 159 (325)
.+++|++|++ ++|.+.+. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ +|..
T Consensus 162 ~~~~L~~L~L--~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~ 238 (592)
T 3ogk_B 162 HCRKIKTLLM--EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF 238 (592)
T ss_dssp HCTTCSEEEC--TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH
T ss_pred hCCCCCEEEC--ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH
Confidence 4567777777 66666544 33344556777777777777752 334445567777777777777763 5566
Q ss_pred ccCCCCCcEEEcCcC--------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCC
Q 045233 160 LARLTNLKYLDLKVT--------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 160 ~~~l~~L~~L~l~~n--------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 214 (325)
+..+++|+.|+++.. .+++|+.++++++... .+|..+..+++|++|++++|.++
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCC
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCC
Confidence 666666666666421 2234444444443222 33444444555555555555543
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=2.9e-10 Score=103.72 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=103.3
Q ss_pred cCCCCCCCEEEeccccCcC---------CCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcC
Q 045233 86 FSCFPNLESLRIQAYYYGF---------TGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPI 156 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~---------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 156 (325)
...+++|+.|.+ ..+.. .+.++..+..+++|+.|++++|.-. .++. +. +++|+.|++..|.++...
T Consensus 135 ~~~l~~L~~L~l--~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 135 KEKFAHFEGLFW--GDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHHHTTCSEEEE--CCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred hhhcchhhheee--cCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH
Confidence 345778888888 33322 1224455667788888888877311 2333 33 778888888888776433
Q ss_pred chhcc--CCCCCcEEEcCc--------------------CCCCCCcEEEccCCcCCCCCchhhh---CCCCCCEEECCCC
Q 045233 157 PSTLA--RLTNLKYLDLKV--------------------TSMKNLTWLDISNNKIEGSIPGELT---ELSRPDCLSLSAN 211 (325)
Q Consensus 157 p~~~~--~l~~L~~L~l~~--------------------n~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~L~~N 211 (325)
...+. .+++|+.|+|+. ..+++|++|+|.+|.+.+..+..+. .+++|+.|+|+.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 33343 678888888742 1368999999999998765444443 4789999999999
Q ss_pred cCCCC----CCCcccCCCCCcEEEccCCCCCchH
Q 045233 212 KLSGP----VPFSNKQLSTMYIVRLSPNKGLGSN 241 (325)
Q Consensus 212 ~l~~~----~p~~~~~l~~L~~L~l~~N~~~~~~ 241 (325)
.+++. ++..+..+++|+.|+++.|.++...
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 99863 3444567889999999999876443
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.94 E-value=4.2e-10 Score=108.98 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=51.1
Q ss_pred CCCCCCEEEeccccCcCCCCCccccc-CCCcCCEEecccC-CCCCC-CchhhcCCcccceeecccCcCCCcCchhcc---
Q 045233 88 CFPNLESLRIQAYYYGFTGSIPSDIS-ALSKLQLLDLSLN-RLSGT-IPSNIGNLRNLVHLDLGNNNLTGPIPSTLA--- 161 (325)
Q Consensus 88 ~l~~L~~L~l~~~~n~~~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--- 161 (325)
.+++|++|++ ++|.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+.
T Consensus 103 ~~~~L~~L~L--~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRL--KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEE--ESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred hCCCCCeEEe--eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 4556666666 55555544444443 4566666666666 33321 333334566666666666665543333322
Q ss_pred -CCCCCcEEEcCcCC--------------CCCCcEEEccCC
Q 045233 162 -RLTNLKYLDLKVTS--------------MKNLTWLDISNN 187 (325)
Q Consensus 162 -~l~~L~~L~l~~n~--------------l~~L~~L~Ls~n 187 (325)
.+++|+.|++++|. +++|++|++++|
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 44466666665542 355666666555
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=6.6e-09 Score=96.12 Aligned_cols=148 Identities=10% Similarity=0.009 Sum_probs=61.7
Q ss_pred cccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCch
Q 045233 79 AQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPS 158 (325)
Q Consensus 79 ~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 158 (325)
..++...|.++++|+.+++ ..|.+.......|. ..+|+.+.+..+ ++..-...|.++++|+.+++..| ++.....
T Consensus 169 ~~I~~~aF~~c~~L~~l~l--~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~ 243 (401)
T 4fdw_A 169 EQLKEDIFYYCYNLKKADL--SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQE 243 (401)
T ss_dssp CEECSSTTTTCTTCCEEEC--TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTT
T ss_pred cEehHHHhhCcccCCeeec--CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccc
Confidence 3344444555555555555 44433332222232 244444444422 33233334444445555544432 2212222
Q ss_pred hccCCCCCcEEEcCcC----------CCCCCcEEEccCCcCC-----CCCchhhhCCCCCCEEECCCCcCCCCCCCcccC
Q 045233 159 TLARLTNLKYLDLKVT----------SMKNLTWLDISNNKIE-----GSIPGELTELSRPDCLSLSANKLSGPVPFSNKQ 223 (325)
Q Consensus 159 ~~~~l~~L~~L~l~~n----------~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 223 (325)
+|.+ .+|+.+.+..+ ++++|+.+++.+|.+. ...+..|.++++|+.+++. +.++......|..
T Consensus 244 aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~ 321 (401)
T 4fdw_A 244 AFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGG 321 (401)
T ss_dssp TTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTT
T ss_pred cccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcC
Confidence 3333 33444433222 3445555555544433 2333445555555555554 2233333344444
Q ss_pred CCCCcEEEcc
Q 045233 224 LSTMYIVRLS 233 (325)
Q Consensus 224 l~~L~~L~l~ 233 (325)
+++|+.+.+.
T Consensus 322 c~~L~~l~lp 331 (401)
T 4fdw_A 322 NRKVTQLTIP 331 (401)
T ss_dssp CCSCCEEEEC
T ss_pred CCCccEEEEC
Confidence 5555555543
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.91 E-value=7.9e-09 Score=95.63 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=112.1
Q ss_pred ccccccCCccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeec
Q 045233 68 LSWYDVDLNAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDL 147 (325)
Q Consensus 68 l~~l~~~~n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (325)
|+.++++.|.+..++...|. ..+|+.+.+ . +.+...-...|.++++|+.+++..| ++..-..+|.+ .+|+.+.+
T Consensus 182 L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l--p-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFV-YAGIEEVLL--P-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp CCEEECTTSCCSEECTTTTT-TCCCSEEEC--C-TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred CCeeecCCCcceEechhhEe-ecccCEEEe--C-CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 44455566677777777777 478888888 4 3355555667888888888888765 44344455666 67888888
Q ss_pred ccCcCCCcCchhccCCCCCcEEEcCcC----------------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCC
Q 045233 148 GNNNLTGPIPSTLARLTNLKYLDLKVT----------------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSAN 211 (325)
Q Consensus 148 s~N~l~~~~p~~~~~l~~L~~L~l~~n----------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 211 (325)
.+.++...+..|.++++|+.+++..| .+++|+.+++. +.++.....+|.++++|+.+.+..|
T Consensus 256 -p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 -PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp -ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred -CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 44566455667888888888877554 44578888887 4466566677888888888888554
Q ss_pred cCCCCCCCcccCCCCCcEEEccCCCCC
Q 045233 212 KLSGPVPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 212 ~l~~~~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
++...+.+|..+ +|+.+.+.+|...
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 554556677778 8888888877643
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.90 E-value=4.1e-11 Score=116.17 Aligned_cols=125 Identities=14% Similarity=0.087 Sum_probs=87.9
Q ss_pred CCcCCEEecccCCCCCCCchhhc-CCcccceeecc--c----CcCCCc-----CchhccCCCCCcEEEcCcC--------
Q 045233 115 LSKLQLLDLSLNRLSGTIPSNIG-NLRNLVHLDLG--N----NNLTGP-----IPSTLARLTNLKYLDLKVT-------- 174 (325)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~l~~n-------- 174 (325)
+++|++|+++.|.+++.....+. .+++|+.|+++ + |.++.. ++..+..+++|+.|+++++
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~ 450 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY 450 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHH
Confidence 56677776666666654444443 47788888888 3 455521 1223567788888888764
Q ss_pred ---CCCCCcEEEccCCcCCCCCchhh-hCCCCCCEEECCCCcCCCCCCC-cccCCCCCcEEEccCCCCCc
Q 045233 175 ---SMKNLTWLDISNNKIEGSIPGEL-TELSRPDCLSLSANKLSGPVPF-SNKQLSTMYIVRLSPNKGLG 239 (325)
Q Consensus 175 ---~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~l~~N~~~~ 239 (325)
.+++|+.|++++|.+++..+..+ .++++|+.|++++|.+++..+. ....+++|+.|++++|+++.
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 27889999999999876655555 6689999999999998643332 34568899999999998843
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.74 E-value=9.7e-11 Score=102.00 Aligned_cols=14 Identities=0% Similarity=-0.391 Sum_probs=10.8
Q ss_pred CCccceeeEeCCCC
Q 045233 48 DHCKWIGITCNSAG 61 (325)
Q Consensus 48 ~~C~w~gv~c~~~~ 61 (325)
..|.|.|+.|+..+
T Consensus 76 ~l~~~~g~i~~~~~ 89 (267)
T 3rw6_A 76 ALKAVNYKILDREN 89 (267)
T ss_dssp HHHHTTSSCBCTTS
T ss_pred HHHhcCcEEECCCC
Confidence 45789999998654
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=2e-08 Score=91.57 Aligned_cols=144 Identities=20% Similarity=0.228 Sum_probs=99.1
Q ss_pred cCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhc--CCcccceeeccc--CcCCCc-----C
Q 045233 86 FSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIG--NLRNLVHLDLGN--NNLTGP-----I 156 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~--N~l~~~-----~ 156 (325)
+..+|+|+.|++ .++.-. .++. +. +++|++|++..|.+.......+. .+++|+.|+|+. |...+. +
T Consensus 168 l~~~P~L~~L~L--~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 168 LDAMPLLNNLKI--KGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHTCTTCCEEEE--ECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HhcCCCCcEEEE--eCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 467899999999 665211 2333 33 78999999999988744434444 789999999863 222211 1
Q ss_pred chhc--cCCCCCcEEEcCcC--------------CCCCCcEEEccCCcCCCCC----chhhhCCCCCCEEECCCCcCCCC
Q 045233 157 PSTL--ARLTNLKYLDLKVT--------------SMKNLTWLDISNNKIEGSI----PGELTELSRPDCLSLSANKLSGP 216 (325)
Q Consensus 157 p~~~--~~l~~L~~L~l~~n--------------~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~ 216 (325)
...+ ..+++|++|++.+| .+++|++|+|+.|.+++.. +..+..+++|+.|++++|.++..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1223 25789999999877 3678999999999998743 33445679999999999998853
Q ss_pred CCCcccC-CCCCcEEEccCCC
Q 045233 217 VPFSNKQ-LSTMYIVRLSPNK 236 (325)
Q Consensus 217 ~p~~~~~-l~~L~~L~l~~N~ 236 (325)
.-..+.. + ...++++.+.
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 2222332 2 3557887775
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=1.8e-08 Score=82.97 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=70.0
Q ss_pred cccCCCcCCEEecccC-CCCC----CCchhhcCCcccceeecccCcCCCcC----chhccCCCCCcEEEcCcCCCCCCcE
Q 045233 111 DISALSKLQLLDLSLN-RLSG----TIPSNIGNLRNLVHLDLGNNNLTGPI----PSTLARLTNLKYLDLKVTSMKNLTW 181 (325)
Q Consensus 111 ~l~~l~~L~~L~Ls~n-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~l~~n~l~~L~~ 181 (325)
.+...+.|++|+|++| .+.. .+...+...++|++|+|++|++.... ...+... ++|++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n-------------~~L~~ 97 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-------------NTLKS 97 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-------------SSCCE
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC-------------CCcCE
Confidence 3445566666666666 6652 23344555566777777777665321 1222222 33455
Q ss_pred EEccCCcCCCC----CchhhhCCCCCCEEEC--CCCcCCCC----CCCcccCCCCCcEEEccCCCCC
Q 045233 182 LDISNNKIEGS----IPGELTELSRPDCLSL--SANKLSGP----VPFSNKQLSTMYIVRLSPNKGL 238 (325)
Q Consensus 182 L~Ls~n~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~l~~N~~~ 238 (325)
|+|++|.+... +...+...+.|++|+| ++|.++.. +...+...++|+.|++++|.+.
T Consensus 98 L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred EECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 56666666543 3455666778888888 77888743 3344566788999999999764
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=3.1e-08 Score=81.53 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=72.0
Q ss_pred CchhhcCCcccceeecccC-cCCCc----CchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCCCC----CchhhhCCCC
Q 045233 132 IPSNIGNLRNLVHLDLGNN-NLTGP----IPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIEGS----IPGELTELSR 202 (325)
Q Consensus 132 ~p~~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~ 202 (325)
+...+...+.|++|+|++| .+... +...+...+ +|++|+|++|.+... +...+...+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-------------~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~ 94 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-------------YVKKFSIVGTRSNDPVAFALAEMLKVNNT 94 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-------------SCCEEECTTSCCCHHHHHHHHHHHHHCSS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-------------CcCEEECcCCCCChHHHHHHHHHHHhCCC
Confidence 4455677889999999999 88742 223343333 456667777877643 3455667789
Q ss_pred CCEEECCCCcCCCC----CCCcccCCCCCcEEEc--cCCCCCchHHHH
Q 045233 203 PDCLSLSANKLSGP----VPFSNKQLSTMYIVRL--SPNKGLGSNFII 244 (325)
Q Consensus 203 L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l--~~N~~~~~~~~~ 244 (325)
|++|+|++|.|++. +...+...+.|+.|++ ++|.+.......
T Consensus 95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 99999999999853 4566788889999999 889987654433
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=2.2e-07 Score=80.71 Aligned_cols=83 Identities=23% Similarity=0.256 Sum_probs=63.3
Q ss_pred cCCCcCCEEecccCCCCC--CCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcCCCCCCcEEEccCCcCC
Q 045233 113 SALSKLQLLDLSLNRLSG--TIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVTSMKNLTWLDISNNKIE 190 (325)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n~l~ 190 (325)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+.. + +|++|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~----------l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG----------L-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT----------S-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc----------C-CcceEEccCCcCc
Confidence 568899999999999997 4567778899999999999999854 23333331 2 4677788888888
Q ss_pred CCCc-------hhhhCCCCCCEEEC
Q 045233 191 GSIP-------GELTELSRPDCLSL 208 (325)
Q Consensus 191 ~~~p-------~~~~~l~~L~~L~L 208 (325)
+.+| ..+..+++|+.||=
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cccCcchhHHHHHHHHCcccCeECC
Confidence 7665 35788999998873
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.96 E-value=4e-05 Score=70.34 Aligned_cols=58 Identities=7% Similarity=-0.023 Sum_probs=31.7
Q ss_pred CCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCC
Q 045233 176 MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235 (325)
Q Consensus 176 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 235 (325)
+.+|+.+.+.++ ++.....+|.++.+|+.+++.++ ++.....+|.++++|+.+.+..|
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 345555555433 44344455666666666666533 44333455666666666666544
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.91 E-value=2.5e-05 Score=71.63 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=75.5
Q ss_pred cccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcC
Q 045233 77 AQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPI 156 (325)
Q Consensus 77 ~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 156 (325)
.+..++..+|.++.+|+.+.+ . +.+...-..+|.++++|+.+++..+ ++..-...|.++.+|+.+.+..+ +....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~l--p-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKI--P-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEEC--C-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred eEeEhHHHHhhCCCCceEEEe--C-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeec
Confidence 356677888999999999998 4 3455555667888999999999765 55344566888888888776644 22223
Q ss_pred chhccCCCCCcEEEcCcC---------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCC
Q 045233 157 PSTLARLTNLKYLDLKVT---------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSAN 211 (325)
Q Consensus 157 p~~~~~l~~L~~L~l~~n---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 211 (325)
...|.++..+........ .+++|+.+.+.++- .......|.++.+|+.+.+..|
T Consensus 133 ~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred ceeeecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence 334444332222211111 34455555554432 2233445555555555555443
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=4.1e-06 Score=67.86 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=37.4
Q ss_pred CCCEEEeccccCcCCCCCcccccCCCcCCEEecccCC-CCCCCchhhcCC----cccceeecccCc-CCCcCchhccCCC
Q 045233 91 NLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNR-LSGTIPSNIGNL----RNLVHLDLGNNN-LTGPIPSTLARLT 164 (325)
Q Consensus 91 ~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~ 164 (325)
.|+.||+ +++.++..--..+..+++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+..++
T Consensus 62 ~L~~LDL--s~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDA--TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEE--ESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeC--cCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4566666 5555544333345556666666666663 443222333433 256666666653 5432222333344
Q ss_pred CCcEEE
Q 045233 165 NLKYLD 170 (325)
Q Consensus 165 ~L~~L~ 170 (325)
+|+.|+
T Consensus 140 ~L~~L~ 145 (176)
T 3e4g_A 140 NLKYLF 145 (176)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 444333
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=7e-06 Score=66.45 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=20.3
Q ss_pred CcCCEEecccCCCCCCCchhhcCCcccceeecccCc
Q 045233 116 SKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNN 151 (325)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 151 (325)
..|+.||++++.++..--..+.++++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 346666666666554333444555666666666653
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.75 E-value=0.00012 Score=67.09 Aligned_cols=58 Identities=9% Similarity=0.128 Sum_probs=29.2
Q ss_pred CCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCC
Q 045233 176 MKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235 (325)
Q Consensus 176 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 235 (325)
+.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 344444444432 33333445556666666666433 44333445556666666665554
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.72 E-value=8.2e-05 Score=68.21 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=59.2
Q ss_pred cccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCc
Q 045233 111 DISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLT 180 (325)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~ 180 (325)
.|..+..|+.+.+..+..+ .-...|.++++|+.+.+. +.++......|.++.+|+.+++..+ ++.+|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence 3444444444444433222 223334444444444443 2233222334444444444444332 345556
Q ss_pred EEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCC
Q 045233 181 WLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKG 237 (325)
Q Consensus 181 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~ 237 (325)
.+.+..+ ++.....+|.++++|+.+++.++.... ..+....+|+.+.+..|..
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 6666543 665566789999999999999876541 3466777888888876643
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.70 E-value=0.00028 Score=64.16 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=75.3
Q ss_pred ccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCCCCcEEEcCcC----------CCCCCcE
Q 045233 112 ISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLTNLKYLDLKVT----------SMKNLTW 181 (325)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n----------~l~~L~~ 181 (325)
+....+|+.+.+..+ +.......|.++..|+.+.+..+ ++......|.++.+|+.+.+..+ .+++|+.
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCE
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccc
Confidence 334455555555443 22233445666777777777654 44344456777777777766543 4567777
Q ss_pred EEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCC
Q 045233 182 LDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPN 235 (325)
Q Consensus 182 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 235 (325)
+.+.++.++.....+|.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 777777777556667777777888777644 44344556777777777766543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.51 E-value=0.00055 Score=62.17 Aligned_cols=134 Identities=13% Similarity=0.052 Sum_probs=72.3
Q ss_pred ccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccCcCCCcCchhccCCC
Q 045233 85 NFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNLTGPIPSTLARLT 164 (325)
Q Consensus 85 ~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 164 (325)
.+....+|+.+.+ .. .+.......+.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++......|.++.
T Consensus 212 ~f~~~~~l~~i~~--~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 212 GFSYGKNLKKITI--TS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTCSSCSEEEC--CT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ccccccccceeee--cc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 3445555555555 21 222223344555666666666544 33233444555666666665432 3323334555666
Q ss_pred CCcEEEcCcC-----------CCCCCcEEEccCCcCCCCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCC
Q 045233 165 NLKYLDLKVT-----------SMKNLTWLDISNNKIEGSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLS 225 (325)
Q Consensus 165 ~L~~L~l~~n-----------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 225 (325)
+|+.+.+..+ ++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++..-..+|.+++
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 6666665433 3456666676543 55455668888888888888654 4433344555443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.43 E-value=0.0001 Score=60.66 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=34.6
Q ss_pred CCcEEEccCCcCCCC----CchhhhCCCCCCEEECCCCc---CCC----CCCCcccCCCCCcEEEccCCC
Q 045233 178 NLTWLDISNNKIEGS----IPGELTELSRPDCLSLSANK---LSG----PVPFSNKQLSTMYIVRLSPNK 236 (325)
Q Consensus 178 ~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~---l~~----~~p~~~~~l~~L~~L~l~~N~ 236 (325)
.|+.|+|++|.|... +.+.+..-+.|+.|+|++|. +.. .+...+...+.|+.|+++.|.
T Consensus 99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 345555555655532 23345555667888887542 221 133456667788889888765
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.28 E-value=0.00055 Score=52.48 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=48.1
Q ss_pred cEEEccCCcCC-CCCchhhhCCCCCCEEECCCCcCCCCCCCcccCCCCCcEEEccCCCCCchHH
Q 045233 180 TWLDISNNKIE-GSIPGELTELSRPDCLSLSANKLSGPVPFSNKQLSTMYIVRLSPNKGLGSNF 242 (325)
Q Consensus 180 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~~~~~~~ 242 (325)
..++.++++++ ..+|..+ .++++.|+|++|+|+...+..|..+++|+.|+|++|++.|.--
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 36777888876 3455332 2368999999999997777888999999999999999998654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.25 E-value=0.0002 Score=58.91 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=71.1
Q ss_pred cCCCCCCCEEEeccccC-cCCC----CCcccccCCCcCCEEecccCCCCC----CCchhhcCCcccceeecccCcCCCcC
Q 045233 86 FSCFPNLESLRIQAYYY-GFTG----SIPSDISALSKLQLLDLSLNRLSG----TIPSNIGNLRNLVHLDLGNNNLTGPI 156 (325)
Q Consensus 86 ~~~l~~L~~L~l~~~~n-~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~ 156 (325)
+..-+.|+.|++ ++| .+.. .+.+.+..-+.|+.|+|++|.+.. .+.+.+..-+.|+.|+|++|.|....
T Consensus 37 l~~n~~L~~L~L--~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNI--NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEEC--TTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEEC--CCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 445677888888 654 4432 133446666788888888888872 34455555677888888888887332
Q ss_pred c----hhccCCCCCcEEEcCcCCCCCCcEEEccCC---cCCC----CCchhhhCCCCCCEEECCCCcCC
Q 045233 157 P----STLARLTNLKYLDLKVTSMKNLTWLDISNN---KIEG----SIPGELTELSRPDCLSLSANKLS 214 (325)
Q Consensus 157 p----~~~~~l~~L~~L~l~~n~l~~L~~L~Ls~n---~l~~----~~p~~~~~l~~L~~L~L~~N~l~ 214 (325)
- +.+..-+ .|++|+|++| .+.. .+.+.+..-+.|+.|+++.|.+.
T Consensus 115 a~ala~aL~~N~-------------tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTLVTQ-------------SIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTTTTC-------------CCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhhCC-------------ceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2 2233333 3566666654 3332 24456677789999999877543
No 164
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=97.21 E-value=6.3e-05 Score=66.74 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=28.4
Q ss_pred HHHHHhcCCcceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233 285 DLIEATEGFDYLIQFPKFESFALSFLFR---SSTGTFLIIIFY 324 (325)
Q Consensus 285 ~l~~~t~nf~~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~ 324 (325)
|+...+-.|...||+|+||.||+|++.. ..+++.||||..
T Consensus 22 ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l 64 (308)
T 4gt4_A 22 EISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTL 64 (308)
T ss_dssp BCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEEC
T ss_pred cCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEE
Confidence 3333444566889999999999999842 246789999975
No 165
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=97.20 E-value=0.00021 Score=63.29 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=40.2
Q ss_pred CccccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 278 DRSIVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 278 ~~~~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+++++.++..++++|. ..||+|+||.||++.. .+|+.||||.+
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~---~~~~~vavK~~ 62 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRL---ADGTLVAVKRL 62 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECC---SSSCCEEEEEC
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEe---cCCCEEEEEEe
Confidence 45799999999999997 8899999999999997 78999999975
No 166
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=97.08 E-value=0.00039 Score=61.74 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=37.0
Q ss_pred CccccHHHHHHHhcCC----------c--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 278 DRSIVYEDLIEATEGF----------D--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 278 ~~~~~~~~l~~~t~nf----------~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+.++++++.++++++ + ..||+|+||.||+++.. .+|+.||||++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~--~~g~~vavK~~ 78 (321)
T 2c30_A 22 SGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREK--HSGRQVAVKMM 78 (321)
T ss_dssp ---CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred CCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEEC--CCCcEEEEEEE
Confidence 3569999999999863 2 67999999999999984 68999999985
No 167
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=96.75 E-value=0.00031 Score=62.23 Aligned_cols=43 Identities=28% Similarity=0.316 Sum_probs=36.0
Q ss_pred ccccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 279 RSIVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 279 ~~~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.++.+.++..++++|. ..||+|+||.||+|+. .+|+.||||.+
T Consensus 27 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~---~~~~~vavK~~ 71 (321)
T 2qkw_B 27 YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVL---RDGAKVALKRR 71 (321)
T ss_dssp ---CCSCCCCCCCCCSCCCCSCBCSSSEEEEEEC---TTCCEEEEEEC
T ss_pred eeecHHHHHHHHhccCccceeecCCCeeEEEEEE---CCCCEEEEEEe
Confidence 4567778888999997 8899999999999998 78999999975
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.0027 Score=48.57 Aligned_cols=35 Identities=29% Similarity=0.269 Sum_probs=15.2
Q ss_pred CCEEecccCCCCCCCchhhcCCcccceeecccCcC
Q 045233 118 LQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNNNL 152 (325)
Q Consensus 118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 152 (325)
|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333344444444444444443
No 169
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=96.66 E-value=0.001 Score=59.39 Aligned_cols=30 Identities=7% Similarity=0.007 Sum_probs=23.8
Q ss_pred ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|++. ...+|+.||||..
T Consensus 47 ~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l 79 (329)
T 4aoj_A 47 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKAL 79 (329)
T ss_dssp EEEEECSSEEEEEEEESSSCC---CEEEEEEEE
T ss_pred EEEccCCCcEEEEEEECCcccCCCCeEEEEEEE
Confidence 78999999999999974 2246899999975
No 170
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=96.58 E-value=0.00027 Score=62.41 Aligned_cols=32 Identities=6% Similarity=0.007 Sum_probs=27.5
Q ss_pred cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
++|. ..||+|+||.||+|+.. .+|+.||||.+
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~--~~~~~vavK~~ 90 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSK--EDGRLYAVKRS 90 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEET--TTSCEEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEEC--CCCeEEEEEEe
Confidence 4454 78999999999999985 68999999975
No 171
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=96.55 E-value=0.0014 Score=57.43 Aligned_cols=30 Identities=17% Similarity=0.004 Sum_probs=26.2
Q ss_pred CcceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 293 FDYLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 293 f~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
|+..||+||||.||+|+-. .+|+.||||.+
T Consensus 30 ~~~~iG~G~fg~Vy~a~~~--~~~~~vAiK~i 59 (290)
T 3fpq_A 30 FDIEIGRGSFKTVYKGLDT--ETTVEVAWCEL 59 (290)
T ss_dssp EEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred eeeEEecCcCcEEEEEEEC--CCCeEEEEEEE
Confidence 4568999999999999875 78999999975
No 172
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=96.36 E-value=0.0014 Score=60.92 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=35.4
Q ss_pred ccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 281 IVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 281 ~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
+.+.++...+++|. ..||+|+||.||+++.. .+|+.||||++
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~--~~~~~vAvK~~ 107 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLK--NADKVFAMKIL 107 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEc--CCCcEEEEEEE
Confidence 44666667788887 88999999999999995 67899999985
No 173
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=96.33 E-value=0.0027 Score=57.02 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 80 ~~iG~G~fG~V~~a~~~--~tg~~vAiK~i 107 (346)
T 4fih_A 80 IKIGEGSTGIVCIATVR--SSGKLVAVKKM 107 (346)
T ss_dssp EEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred EEeecCcCeEEEEEEEC--CCCCEEEEEEE
Confidence 67999999999999985 78999999975
No 174
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=96.32 E-value=0.002 Score=57.06 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=27.7
Q ss_pred cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
++|. ..||+|+||.||+++-. .+|+.||||++
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~--~~~~~~AiK~i 65 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLAREL--ATSREYAIKIL 65 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEEC--CCCCEEEEEEE
Confidence 4555 78999999999999875 78999999985
No 175
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=96.19 E-value=0.0022 Score=59.10 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=35.4
Q ss_pred ccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 281 IVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 281 ~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
+.+++....+++|. ..||+|+||.||+++.. .+|+.||||++
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~--~~~~~vAiK~l 94 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMK--QTGQVYAMKIM 94 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEEC--CCCCEEEEEEE
Confidence 45566666778887 88999999999999985 78999999985
No 176
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=96.15 E-value=0.0031 Score=56.43 Aligned_cols=28 Identities=11% Similarity=-0.206 Sum_probs=25.2
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 64 ~~lG~G~fG~Vy~a~~~--~~g~~vAiK~i 91 (336)
T 4g3f_A 64 PRVGRGSFGEVHRMKDK--QTGFQCAVKKV 91 (336)
T ss_dssp EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred cEeccCCCeEEEEEEEC--CCCCEEEEEEE
Confidence 57999999999999975 78999999975
No 177
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=96.10 E-value=0.0038 Score=57.24 Aligned_cols=28 Identities=14% Similarity=-0.091 Sum_probs=25.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||.+
T Consensus 60 ~~lG~G~fG~V~~a~~~--~t~~~vAiK~i 87 (398)
T 4b99_A 60 ETIGNGAYGVVSSARRR--LTGQQVAIKKI 87 (398)
T ss_dssp EEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred EEEecccCeEEEEEEEC--CCCCEEEEEEE
Confidence 78999999999999875 78999999975
No 178
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=95.93 E-value=0.0054 Score=56.60 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=25.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||.+
T Consensus 157 ~~iG~G~fG~V~~a~~~--~tg~~vAiK~i 184 (423)
T 4fie_A 157 IKIGEGSTGIVCIATVR--SSGKLVAVKKM 184 (423)
T ss_dssp EEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred eEeccCcCcEEEEEEEC--CCCCEEEEEEE
Confidence 67999999999999985 78999999975
No 179
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=95.91 E-value=0.004 Score=54.99 Aligned_cols=26 Identities=8% Similarity=-0.113 Sum_probs=21.7
Q ss_pred cceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 294 DYLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
...||+||||.||+|++ ...||||+.
T Consensus 41 ~~~iG~G~fG~Vy~~~~-----~~~vAvK~~ 66 (307)
T 3omv_A 41 STRIGSGSFGTVYKGKW-----HGDVAVKIL 66 (307)
T ss_dssp EEECCCCSSSEEEEEES-----SSEEEEEEC
T ss_pred eeEEeeCCCcEEEEEEE-----CCcEEEEEE
Confidence 47899999999999998 235899874
No 180
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=95.82 E-value=0.0022 Score=57.52 Aligned_cols=44 Identities=7% Similarity=0.033 Sum_probs=36.5
Q ss_pred ccccHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 279 RSIVYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 279 ~~~~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..+++.+.....++|. ..||+|+||.||+++-. .+|+.||||++
T Consensus 23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~--~~~~~vavK~~ 68 (360)
T 3llt_A 23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHI--DNKKYYAVKVV 68 (360)
T ss_dssp GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred eeeeeecceEecCEEEEEEEEcccCCeEEEEEEEC--CCCeEEEEEEe
Confidence 3466666666677776 88999999999999985 78999999986
No 181
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=95.78 E-value=0.0055 Score=59.85 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=28.0
Q ss_pred cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
++|. ..||+|+||.||+++-. .+|+.||||++
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~--~tg~~~AiK~i 222 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKA--DTGKMYAMKCL 222 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred HHeEEEEEEecccCeEEEEEEEC--CCCCEEEEEEE
Confidence 4465 78999999999999986 78999999985
No 182
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=95.77 E-value=0.0048 Score=56.83 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 283 YEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 283 ~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
+.++...+++|. ..||+|+||.||+++.. .+|+.||||++
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~--~~~~~~AiK~~ 102 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHK--STRKVYAMKLL 102 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEEC--CCCcEEEEEEE
Confidence 344445567776 88999999999999985 78999999975
No 183
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=95.72 E-value=0.0073 Score=55.07 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=25.6
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||.|++|.||+|.- ++|+.||||+|
T Consensus 101 ~~IG~Gk~a~VY~a~d---~~G~~vAvKi~ 127 (397)
T 4gyi_A 101 SRIGVGKESDIMIVAD---EKGKQKVLKIH 127 (397)
T ss_dssp EEEEECSSEEEEEEEC---TTCCEEEEEEE
T ss_pred CEeeeCCceEEEEEEC---CCCCEEEEEEE
Confidence 7899999999999998 78999999987
No 184
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=95.66 E-value=0.0064 Score=55.90 Aligned_cols=28 Identities=7% Similarity=-0.108 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+||+||||.||+++-. .+|+.||||++
T Consensus 84 ~~LG~G~fG~Vy~a~~~--~~g~~vAvK~~ 111 (413)
T 3dzo_A 84 TVLGQEDPYAYLEATDQ--ETGESFEVHVP 111 (413)
T ss_dssp EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred cccccCCCEEEEEEEec--CCCCceEEEEE
Confidence 78999999999999954 78999999986
No 185
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=95.35 E-value=0.011 Score=53.15 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=24.4
Q ss_pred ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR---SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+... ..+++.||||..
T Consensus 70 ~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l 102 (353)
T 4ase_A 70 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKML 102 (353)
T ss_dssp EEEEECSSEEEEEEEEETSSSTTCEEEEEEEEE
T ss_pred eEEecCCCeEEEEEEEcCCCcccCCeEEEEEEE
Confidence 789999999999999752 234578999975
No 186
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=95.30 E-value=0.013 Score=52.78 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=32.5
Q ss_pred cHHHHHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 282 VYEDLIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 282 ~~~~l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+.......++|. ..||+|+||.||+++.. .+|+.||||++
T Consensus 85 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~--~~g~~vavK~~ 127 (365)
T 2y7j_A 85 DWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHR--ATGHEFAVKIM 127 (365)
T ss_dssp HHHHHHHHHHHEEEEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred cchhhhhhhhhcccceEEecCCCEEEEEEEEC--CCCcEEEEEEE
Confidence 3444455566665 88999999999999994 58999999975
No 187
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=95.18 E-value=0.014 Score=52.13 Aligned_cols=33 Identities=6% Similarity=-0.173 Sum_probs=27.8
Q ss_pred hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+.|. ..||+|+||.||+++.. .+++.||||++
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~~~~vavK~~ 86 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQK--GTQKPYALKVL 86 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred cCcEEEeeEEeeCCCEEEEEEEEC--CCCcEEEEEEe
Confidence 34454 78999999999999985 67899999986
No 188
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=95.10 E-value=0.015 Score=51.41 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=24.0
Q ss_pred cccHHHHHHHhcCCc-----------ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233 280 SIVYEDLIEATEGFD-----------YLIQFPKFESFALSFLFR-SSTGTFLIIIFY 324 (325)
Q Consensus 280 ~~~~~~l~~~t~nf~-----------~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~ 324 (325)
..+|.+...++..|. ..||+|+||.||+|.... ...+..||||.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~ 85 (325)
T 3kul_A 29 PHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKAL 85 (325)
T ss_dssp --------------CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEE
T ss_pred cccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEec
Confidence 456666666666553 779999999999999841 124556999975
No 189
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=95.06 E-value=0.012 Score=52.11 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=30.7
Q ss_pred HHHHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 286 LIEATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 286 l~~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
+.+..++|. ..||+|+||.||+++-. .+++.||||++
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~--~~~~~vaiK~~ 59 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIEN--QTRAIRAIKIM 59 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred hhhhhhheeecceeeecCCeEEEEEEEC--CCCceEEEeeh
Confidence 445556665 78999999999999885 78999999986
No 190
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=94.97 E-value=0.015 Score=53.29 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=27.4
Q ss_pred cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
++|. ..||+|+||.||+++.. .+|+.||||++
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~--~~~~~~AvK~~ 85 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLK--KTDRIYAMRVV 85 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred hHcEEEEEEeeCCCeEEEEEEEC--CCCCEEEEEEE
Confidence 3454 78999999999999985 78999999985
No 191
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=94.96 E-value=0.015 Score=51.62 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=25.2
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+||+|+||.||+++-. .+|+.||||++
T Consensus 35 ~~lG~G~~g~V~~~~~~--~~~~~vavK~~ 62 (336)
T 3fhr_A 35 QVLGLGVNGKVLECFHR--RTGQKCALKLL 62 (336)
T ss_dssp EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred eeeeeCCCeEEEEEEEC--CCCCEEEEEEe
Confidence 47999999999999985 68999999985
No 192
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=94.96 E-value=0.017 Score=49.31 Aligned_cols=29 Identities=14% Similarity=0.008 Sum_probs=25.5
Q ss_pred cceeecCCCcEEEEEeeecCCCCcE--EEEEEe
Q 045233 294 DYLIQFPKFESFALSFLFRSSTGTF--LIIIFY 324 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~~~~~~~--vav~~~ 324 (325)
...||.|+||.||++... .+|+. ||||+|
T Consensus 52 ~~~ig~G~~g~Vy~a~~~--~~g~~~~vAvK~~ 82 (258)
T 1zth_A 52 GGVISTGKEANVFYADGV--FDGKPVAMAVKIY 82 (258)
T ss_dssp EEEEEECSSEEEEEEEEE--ETTEEEEEEEEEE
T ss_pred CCEEeecceEEEEEEEEc--CCCcEeeEEEEEE
Confidence 378999999999999984 57989 999986
No 193
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=94.96 E-value=0.013 Score=51.13 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=26.7
Q ss_pred HHhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 288 EATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 288 ~~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
...++|. ..||+|+||.||++.-. .+|+.||||++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~~~vavK~~ 64 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRL--TDRLQVAIKVI 64 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECT--TTCCEEEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEc--cCCeEEEEEEE
Confidence 3445565 88999999999999875 78999999986
No 194
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=94.94 E-value=0.014 Score=52.91 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=28.6
Q ss_pred HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+++|. ..||+|+||.||+++-. .+|+.||||++
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~--~~~~~vaiK~~ 87 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDR--VEQEWVAIKII 87 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEET--TTTEEEEEEEE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEc--CCCcEEEEEEE
Confidence 345564 78999999999999875 78999999986
No 195
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=94.89 E-value=0.017 Score=51.17 Aligned_cols=28 Identities=4% Similarity=-0.032 Sum_probs=25.3
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||.+
T Consensus 57 ~~lG~G~~g~Vy~~~~~--~~~~~vavK~~ 84 (340)
T 3an0_A 57 MELGRGAYGVVEKMRHV--PSGQIMAVKRI 84 (340)
T ss_dssp EEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred eEecccCCEEEEEEEEc--CCCCEEEEEEe
Confidence 67999999999999974 78999999986
No 196
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=94.86 E-value=0.019 Score=52.79 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++.. .+|+.||||.+
T Consensus 60 ~~lG~G~fg~Vy~~~~~--~~~~~vaiK~~ 87 (420)
T 1j1b_A 60 KVIGNGSFGVVYQAKLC--DSGELVAIKKV 87 (420)
T ss_dssp EEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred eEEeeCCCEEEEEEEEC--CCCcEEEEEEe
Confidence 78999999999999995 67999999975
No 197
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=94.85 E-value=0.018 Score=50.76 Aligned_cols=31 Identities=10% Similarity=0.001 Sum_probs=24.8
Q ss_pred cceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233 294 DYLIQFPKFESFALSFLFR-SSTGTFLIIIFY 324 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~ 324 (325)
-..||+|+||.||+++-.. ..+++.||||++
T Consensus 29 ~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i 60 (304)
T 3ubd_A 29 LKVLGQGSFGKVFLVKKISGSDARQLYAMKVL 60 (304)
T ss_dssp EEEEECGGGCEEEEEEECSSTTTTCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEccCCCCCEEEEEEEE
Confidence 3689999999999997521 246899999975
No 198
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=94.82 E-value=0.02 Score=49.65 Aligned_cols=28 Identities=7% Similarity=-0.128 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 37 ~~lg~G~~g~Vy~a~~~--~~~~~vavK~~ 64 (286)
T 3uqc_A 37 IFHGGVPPLQFWQALDT--ALDRQVALTFV 64 (286)
T ss_dssp EEEEBSTTCEEEEEEET--TTTEEEEEEES
T ss_pred EEEcccCCeEEEEEEec--CCCceEEEEEE
Confidence 68999999999999985 67999999986
No 199
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=94.82 E-value=0.017 Score=52.12 Aligned_cols=28 Identities=7% Similarity=-0.108 Sum_probs=25.1
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++.. .+|+.||||++
T Consensus 79 ~~lG~G~~g~V~~a~~~--~~~~~vavK~~ 106 (377)
T 3byv_A 79 TVLGQEDPYAYLEATDQ--ETGESFEVHVP 106 (377)
T ss_dssp EEEEEETTEEEEEEEC---CCCCEEEEEEE
T ss_pred ceeecCCCEEEEEEEEC--CCCcEEEEEEE
Confidence 78999999999999975 78999999986
No 200
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=94.82 E-value=0.02 Score=51.85 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=27.5
Q ss_pred cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
++|. ..||+|+||.||+++.. .+|+.||||++
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~--~~~~~~AiK~~ 71 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHK--AEEVFYAVKVL 71 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEET--TTCCEEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEc--CCCCEEEEEEE
Confidence 3454 78999999999999985 78999999985
No 201
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=94.79 E-value=0.022 Score=49.39 Aligned_cols=27 Identities=11% Similarity=-0.073 Sum_probs=25.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||++.. .+|+.||||++
T Consensus 96 ~~iG~G~~g~Vy~~~~---~~g~~valK~~ 122 (282)
T 1zar_A 96 KLMGEGKESAVFNCYS---EKFGECVVKFH 122 (282)
T ss_dssp EEEEECSSEEEEEEEE---TTTEEEEEEEE
T ss_pred CEeccCCCceEEEEEe---CCCCEEEEEEE
Confidence 7899999999999998 88999999986
No 202
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=94.74 E-value=0.023 Score=51.68 Aligned_cols=27 Identities=7% Similarity=-0.111 Sum_probs=24.8
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||++.. .+|+.||||++
T Consensus 62 ~~LG~G~fg~Vy~~~~---~~~~~vaiK~~ 88 (390)
T 2zmd_A 62 KQIGSGGSSKVFQVLN---EKKQIYAIKYV 88 (390)
T ss_dssp EEEECCSSEEEEEEEC---TTCCEEEEEEE
T ss_pred EEEccCCCeEEEEEEc---CCCCEEEEEEE
Confidence 7899999999999998 67999999975
No 203
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=94.72 E-value=0.026 Score=51.90 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=28.1
Q ss_pred hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.++|. ..||+|+||.||++.-. .+|+.||||++
T Consensus 134 ~~~y~~~~~LG~G~~g~V~~a~~~--~~~~~vavK~~ 168 (419)
T 3i6u_A 134 RDEYIMSKTLGSGACGEVKLAFER--KTCKKVAIRII 168 (419)
T ss_dssp HTTEEEEEEEEECSSSEEEEEEET--TTCCEEEEEEE
T ss_pred hccEEEEeEEeeCCCeEEEEEEEC--CCCcEEEEEEE
Confidence 45554 78999999999999985 78899999985
No 204
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=94.69 E-value=0.022 Score=51.29 Aligned_cols=28 Identities=4% Similarity=-0.162 Sum_probs=25.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 68 ~~lG~G~~g~V~~~~~~--~~~~~vavK~~ 95 (371)
T 3q60_A 68 EPLRVGDRSVVFLVRDV--ERLEDFALKVF 95 (371)
T ss_dssp EEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred eeccCCCCEEEEEEEEC--CCCceeEEEEE
Confidence 78999999999999974 78999999986
No 205
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=94.67 E-value=0.018 Score=52.00 Aligned_cols=28 Identities=14% Similarity=-0.004 Sum_probs=25.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+.. .+|+.||||.+
T Consensus 120 ~~lG~G~~g~V~~~~~~--~~~~~vavK~~ 147 (377)
T 3cbl_A 120 EQIGRGNFGEVFSGRLR--ADNTLVAVKSC 147 (377)
T ss_dssp EEEEEETTEEEEEEEET--TTCCEEEEEEC
T ss_pred eEeccCCCCeEEEEEEe--cCCeEEEEEEc
Confidence 78999999999999995 68999999975
No 206
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=94.66 E-value=0.015 Score=52.52 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=24.1
Q ss_pred ceeecCCCcEEEEEeee-cCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLF-RSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~-~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+.. ...+++.||||.+
T Consensus 51 ~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~ 81 (373)
T 2qol_A 51 KVVGAGEFGEVCSGRLKLPSKKEISVAIKTL 81 (373)
T ss_dssp EEEEECSSSEEEEC-CBCTTSCBCCEEEEEC
T ss_pred eEEeeCCCeEEEEEEEecCCCCceeEEEEEe
Confidence 78999999999999883 2246889999975
No 207
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=94.65 E-value=0.022 Score=50.09 Aligned_cols=28 Identities=18% Similarity=0.001 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||.+
T Consensus 49 ~~lg~G~~g~Vy~~~~~--~~~~~vavK~~ 76 (320)
T 3a99_A 49 PLLGSGGFGSVYSGIRV--SDNLPVAIKHV 76 (320)
T ss_dssp EECSSSSSCEEEEEEET--TTTEEEEEEEE
T ss_pred EEEeeCCCeEEEEEEEC--CCCcEEEEEEE
Confidence 78999999999999864 78999999986
No 208
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=94.46 E-value=0.024 Score=50.05 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=25.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 35 ~~lG~G~~g~V~~~~~~--~~~~~vavK~~ 62 (327)
T 3lm5_A 35 KELGRGKFAVVRQCISK--STGQEYAAKFL 62 (327)
T ss_dssp EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred ceeCCCCCeEEEEEEEC--CCCCEEEEEEE
Confidence 67999999999999985 78999999986
No 209
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=94.44 E-value=0.026 Score=52.08 Aligned_cols=28 Identities=7% Similarity=0.065 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||++.-. .+|+.||||++
T Consensus 103 ~~LG~G~fg~V~~a~~~--~~~~~vAvK~~ 130 (429)
T 3kvw_A 103 KVIGKGSFGQVVKAYDH--KVHQHVALKMV 130 (429)
T ss_dssp EEEEESSSEEEEEEEET--TTTEEEEEEEE
T ss_pred EEcccCccEEEEEEEEC--CCCcEEEEEEE
Confidence 78999999999999875 67999999986
No 210
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=94.39 E-value=0.028 Score=50.39 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=25.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 47 ~~lG~G~~g~V~~~~~~--~~~~~~aiK~~ 74 (350)
T 1rdq_E 47 KTLGTGSFGRVMLVKHK--ESGNHYAMKIL 74 (350)
T ss_dssp EEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred EEeecCcCcEEEEEEEC--CCCCEEEEEEE
Confidence 78999999999999985 68999999985
No 211
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=94.38 E-value=0.027 Score=49.52 Aligned_cols=28 Identities=4% Similarity=0.036 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 42 ~~lg~G~~g~V~~~~~~--~~~~~vavK~~ 69 (330)
T 3nsz_A 42 RKLGRGKYSEVFEAINI--TNNEKVVVKIL 69 (330)
T ss_dssp EEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred EEecccCCeEEEEEEEC--CCCcEEEEEEe
Confidence 78999999999999865 78999999986
No 212
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=94.37 E-value=0.029 Score=50.16 Aligned_cols=28 Identities=11% Similarity=-0.020 Sum_probs=25.2
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||.+
T Consensus 60 ~~lG~G~~g~Vy~a~~~--~~~~~vaiK~~ 87 (348)
T 1u5q_A 60 REIGHGSFGAVYFARDV--RNSEVVAIKKM 87 (348)
T ss_dssp EEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred eEEccCCCEEEEEEEEc--cCCeEEEEEEE
Confidence 67999999999999964 78999999975
No 213
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=94.37 E-value=0.023 Score=52.64 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=27.4
Q ss_pred cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
++|. ..||+|+||.||+++-. .+|+.||||++
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~--~~~~~vaiK~~ 181 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEK--ATGRYYAMKIL 181 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred HHcEEeEEEeeCcCEEEEEEEEc--CCCCEEEEEEE
Confidence 4454 78999999999999975 78999999975
No 214
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=94.35 E-value=0.03 Score=52.05 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=24.9
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+. .+++.||||.+
T Consensus 194 ~~lG~G~fg~V~~~~~---~~~~~vavK~~ 220 (454)
T 1qcf_A 194 KKLGAGQFGEVWMATY---NKHTKVAVKTM 220 (454)
T ss_dssp EEEECCSSEEEEEEEE---TTTEEEEEEEE
T ss_pred EEcccCCceEEEEEEE---CCccEEEEEEe
Confidence 7899999999999999 78899999975
No 215
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=94.35 E-value=0.025 Score=54.43 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=27.5
Q ss_pred cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
++|. ..||+|+||.||+++-. .+|+.||||++
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~--~tg~~~AiK~i 190 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTER--ATGNNFAAKFV 190 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred cccEEEEEEeeccCeEEEEEEEC--CCCCEEEEEEE
Confidence 4454 78999999999999985 78999999975
No 216
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=94.34 E-value=0.034 Score=48.56 Aligned_cols=27 Identities=7% Similarity=-0.111 Sum_probs=24.9
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++. .+|+.||||.+
T Consensus 34 ~~lg~G~~g~Vy~~~~---~~~~~vavK~~ 60 (313)
T 3cek_A 34 KQIGSGGSSKVFQVLN---EKKQIYAIKYV 60 (313)
T ss_dssp EEEECCSSEEEEEEEC---TTCCEEEEEEE
T ss_pred EEecCCCCEEEEEEEc---CCCcEEEEEEe
Confidence 6899999999999998 78999999985
No 217
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=94.30 E-value=0.03 Score=50.50 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=25.3
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 43 ~~lg~G~~g~V~~~~~~--~~~~~vavK~~ 70 (397)
T 1wak_A 43 RKLGWGHFSTVWLSWDI--QGKKFVAMKVV 70 (397)
T ss_dssp EEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred EEeeecCCeeEEEEEec--CCCeEEEEEEE
Confidence 78999999999999864 78999999986
No 218
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=94.24 E-value=0.033 Score=49.85 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=27.3
Q ss_pred cCCc--ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233 291 EGFD--YLIQFPKFESFALSFLFR-SSTGTFLIIIFY 324 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~ 324 (325)
++|. ..||+|+||.||+++... ..+|+.||||++
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~ 90 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVL 90 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEE
Confidence 4454 789999999999998731 247999999986
No 219
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=94.24 E-value=0.026 Score=50.60 Aligned_cols=30 Identities=7% Similarity=-0.072 Sum_probs=23.3
Q ss_pred ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+.. ...+|+.||||++
T Consensus 71 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~ 103 (365)
T 3e7e_A 71 HLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQ 103 (365)
T ss_dssp EEEEECSSEEEEEEEC-------CCCCEEEEEE
T ss_pred EEeeccCCEEEEEEEecCCcccccCcEEEEEEe
Confidence 78999999999999531 1278999999985
No 220
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=94.18 E-value=0.031 Score=53.36 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=25.6
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++.. .+|+.||||++
T Consensus 191 ~~LG~G~fG~Vy~a~~~--~tg~~vAiK~l 218 (543)
T 3c4z_A 191 RVLGRGGFGEVFACQMK--ATGKLYACKKL 218 (543)
T ss_dssp EEEEECSSSEEEEEEET--TTCCEEEEEEE
T ss_pred EEEeeCCCeEEEEEEEC--CCCcEEEEEEE
Confidence 78999999999999985 68999999986
No 221
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=94.11 E-value=0.026 Score=51.01 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=20.2
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++.. .+|+.||||++
T Consensus 95 ~~lG~G~~g~Vy~a~~~--~~g~~vavK~~ 122 (373)
T 2x4f_A 95 EILGGGRFGQVHKCEET--ATGLKLAAKII 122 (373)
T ss_dssp EECC-----CEEEEEET--TTCCEEEEEEE
T ss_pred eEEecCcCEEEEEEEEc--CCCcEEEEEEE
Confidence 57999999999999985 78999999986
No 222
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=94.09 E-value=0.038 Score=48.42 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=23.7
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++. +|+.||||++
T Consensus 43 ~~lG~G~~g~V~~~~~----~~~~vavK~~ 68 (309)
T 3p86_A 43 EKIGAGSFGTVHRAEW----HGSDVAVKIL 68 (309)
T ss_dssp EEEEECSSEEEEEEEE----TTEEEEEEEE
T ss_pred eEeecCCCeEEEEEEE----CCCcEEEEEe
Confidence 7899999999999987 5899999986
No 223
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=94.02 E-value=0.029 Score=53.90 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=27.5
Q ss_pred cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
++|. ..||+|+||.||+++.. .+|+.||||.+
T Consensus 184 ~~f~~~~~LG~G~fG~Vy~a~~~--~tg~~vAvK~l 217 (576)
T 2acx_A 184 NTFRQYRVLGKGGFGEVCACQVR--ATGKMYACKKL 217 (576)
T ss_dssp GGEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred cceEEEEEEeeCCCEEEEEEEEC--CCCCEEEEEEE
Confidence 3454 78999999999999985 78999999985
No 224
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=94.02 E-value=0.037 Score=49.81 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||++.-. .+|+.||||.+
T Consensus 48 ~~lG~G~~g~Vy~~~~~--~~~~~vaiK~~ 75 (371)
T 4exu_A 48 THVGSGAYGSVCSAIDK--RSGEKVAIKKL 75 (371)
T ss_dssp EEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred eEEecCCCeEEEEEEEC--CCCCEEEEEEe
Confidence 78999999999999875 78999999986
No 225
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=94.02 E-value=0.037 Score=49.45 Aligned_cols=28 Identities=4% Similarity=-0.237 Sum_probs=25.6
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||++... .+|+.||||++
T Consensus 39 ~~lg~G~~g~V~~~~~~--~~~~~va~K~~ 66 (360)
T 3eqc_A 39 SELGAGNGGVVFKVSHK--PSGLVMARKLI 66 (360)
T ss_dssp EEEEECSSCEEEEEEET--TTCCEEEEEEE
T ss_pred eeecCCCCeEEEEEEEC--CCCcEEEEEEe
Confidence 68999999999999985 78999999985
No 226
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=94.01 E-value=0.043 Score=48.14 Aligned_cols=28 Identities=7% Similarity=-0.104 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||.+
T Consensus 34 ~~lg~G~~g~V~~~~~~--~~~~~vavK~~ 61 (337)
T 3ll6_A 34 RVLAEGGFAFVYEAQDV--GSGREYALKRL 61 (337)
T ss_dssp EEEECCSSEEEEEEEET--TTCCEEEEEEE
T ss_pred EEEccCCceEEEEEEEC--CCCcEEEEEEe
Confidence 78999999999999974 78999999975
No 227
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=93.99 E-value=0.037 Score=47.69 Aligned_cols=29 Identities=14% Similarity=-0.077 Sum_probs=25.5
Q ss_pred cceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 294 DYLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
...||+|+||.||+|.-. .++..||||.+
T Consensus 31 ~~~lg~G~~g~Vy~~~~~--~~~~~va~k~~ 59 (290)
T 1t4h_A 31 DIEIGRGSFKTVYKGLDT--ETTVEVAWCEL 59 (290)
T ss_dssp EEEEEECSSEEEEEEEET--TTCCEEEEEEE
T ss_pred eeeccCCCCeEEEEeEec--CCceEEEEEEe
Confidence 357999999999999885 78899999975
No 228
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=93.96 E-value=0.034 Score=50.77 Aligned_cols=28 Identities=7% Similarity=-0.069 Sum_probs=25.2
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||++.-. .+|+.||||++
T Consensus 68 ~~LG~G~~g~V~~~~~~--~~~~~vAiK~~ 95 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNK--RTQEKFALKML 95 (400)
T ss_dssp EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred ceeeeccCeEEEEEEEC--CCCCEEEEEEe
Confidence 57999999999999985 78999999975
No 229
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=93.95 E-value=0.027 Score=50.62 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=28.5
Q ss_pred HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..++|. ..||+|+||.||+++-. .+|+.||||++
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~--~~~~~~avK~~ 62 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHK--TTGLEFAAKII 62 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEEC--CCCCEEEEEEE
Confidence 345554 78999999999999985 78999999986
No 230
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=93.94 E-value=0.035 Score=49.03 Aligned_cols=34 Identities=6% Similarity=-0.054 Sum_probs=28.3
Q ss_pred HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..++|. ..||+|+||.||+++-. .+|+.||||.+
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~--~~~~~vaiK~~ 67 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDT--VTNETVAIKRI 67 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEET--TTTEEEEEEEC
T ss_pred chhhEEEEEEEEecCCeEEEEEEEC--CCCceEEEEEE
Confidence 344554 78999999999999864 78999999986
No 231
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=93.92 E-value=0.031 Score=54.83 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=27.7
Q ss_pred cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
++|. ..||+|+||.||+++.. .+|+.||||++
T Consensus 341 ~~f~~~~~LG~G~fG~V~~~~~~--~~~~~vAvK~l 374 (674)
T 3pfq_A 341 TDFNFLMVLGKGSFGKVMLSERK--GTDELYAVKIL 374 (674)
T ss_dssp TTEEEEEESSBTTTBCEEEEEES--SSCCEEEEEEE
T ss_pred cceEEEEEEccCCCEEEEEEEEC--CCCcEEEEEEE
Confidence 4554 78999999999999986 78999999985
No 232
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=93.92 E-value=0.03 Score=50.44 Aligned_cols=30 Identities=3% Similarity=-0.122 Sum_probs=24.1
Q ss_pred ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++.. ...+++.||||.+
T Consensus 77 ~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~ 109 (367)
T 3l9p_A 77 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTL 109 (367)
T ss_dssp EECCCCSSSCEEEEEECC-----CCEEEEEEEC
T ss_pred eEeeeCCCEEEEEEEEccCCCCCcceeEEEEec
Confidence 78999999999999964 1256789999985
No 233
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=93.91 E-value=0.045 Score=47.61 Aligned_cols=28 Identities=11% Similarity=-0.046 Sum_probs=23.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||++... .+|+.||||.+
T Consensus 38 ~~lg~G~~g~Vy~~~~~--~~~~~vavK~~ 65 (310)
T 2wqm_A 38 KKIGRGQFSEVYRAACL--LDGVPVALKKV 65 (310)
T ss_dssp EEEECC--CEEEEEEET--TTCCEEEEEEE
T ss_pred EeecCCCCceEEEEEEc--CCCceEEEEee
Confidence 78999999999999975 78999999976
No 234
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=93.82 E-value=0.038 Score=50.26 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=25.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|++||+|++
T Consensus 57 ~~LG~G~~g~Vy~~~~~--~~~~~~a~K~~ 84 (387)
T 1kob_A 57 EELGSGAFGVVHRCVEK--ATGRVFVAKFI 84 (387)
T ss_dssp EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred EEEecCCCEEEEEEEEC--CCCCEEEEEEe
Confidence 78999999999999985 78999999986
No 235
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=93.81 E-value=0.036 Score=48.32 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=22.8
Q ss_pred cCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 291 EGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 291 ~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
+.|. ..||+|+||.||+++.. .+|+.||||.+
T Consensus 29 ~~y~~~~~lg~G~~g~Vy~~~~~--~~~~~vaiK~~ 62 (314)
T 3com_A 29 EVFDVLEKLGEGSYGSVYKAIHK--ETGQIVAIKQV 62 (314)
T ss_dssp -CEEEEEECC----CEEEEEEET--TTCCEEEEEEE
T ss_pred hhhhhheeeccCCCeEEEEEEEC--CCCCEEEEEec
Confidence 4454 78999999999999985 67999999976
No 236
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=93.73 E-value=0.046 Score=48.33 Aligned_cols=44 Identities=18% Similarity=0.055 Sum_probs=23.4
Q ss_pred ccHHHHHHHhcCCc-----------ceeecCCCcEEEEEeeecC--CCCcEEEEEEe
Q 045233 281 IVYEDLIEATEGFD-----------YLIQFPKFESFALSFLFRS--STGTFLIIIFY 324 (325)
Q Consensus 281 ~~~~~l~~~t~nf~-----------~~ig~g~~g~vy~g~l~~~--~~~~~vav~~~ 324 (325)
..+.+...++..|. ..||+|+||.||+|+.... ..+..||||.+
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~ 81 (333)
T 1mqb_A 25 AMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTL 81 (333)
T ss_dssp -------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEE
T ss_pred cccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEc
Confidence 34455555555553 6799999999999998521 22456999975
No 237
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=93.70 E-value=0.04 Score=48.43 Aligned_cols=32 Identities=6% Similarity=0.100 Sum_probs=26.8
Q ss_pred HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..++|. ..||+|+||.||+|+. +|+.||||++
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~----~~~~vavK~~ 68 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKW----RGEKVAVKVF 68 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEE----TTEEEEEEEE
T ss_pred cccceEEEeEeecCCCeEEEEEEE----CCceEEEEEE
Confidence 345554 8899999999999988 3999999986
No 238
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=93.68 E-value=0.028 Score=52.20 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=16.7
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||.+
T Consensus 59 ~~lG~G~~g~V~~~~~~--~~~~~vaiK~i 86 (458)
T 3rp9_A 59 HLIGTGSYGHVCEAYDK--LEKRVVAIKKI 86 (458)
T ss_dssp CC-------CEEEEEEC--C--CEEEEEEE
T ss_pred eEeeecCCeEEEEEEEC--CCCcEEEEEEe
Confidence 78999999999999875 78999999975
No 239
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=93.60 E-value=0.049 Score=48.77 Aligned_cols=33 Identities=6% Similarity=-0.086 Sum_probs=27.5
Q ss_pred hcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 290 TEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.+.|. ..||+|+||.||++.-. .+|+.||||.+
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~--~~~~~vaiK~~ 60 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDN--LNKVRVAIKKI 60 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEET--TTTEEEEEEEE
T ss_pred cccEEEEEEeecCCCeEEEEEEEC--CCCeEEEEEEe
Confidence 34444 78999999999999875 78999999986
No 240
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=93.51 E-value=0.055 Score=47.74 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=27.5
Q ss_pred hcCCc--ceeecCCCcEEEEEeeecC---CCCcEEEEEEe
Q 045233 290 TEGFD--YLIQFPKFESFALSFLFRS---STGTFLIIIFY 324 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~~~---~~~~~vav~~~ 324 (325)
.++|. ..||+|+||.||+++.... .+++.||||++
T Consensus 46 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~ 85 (343)
T 1luf_A 46 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKML 85 (343)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEEC
T ss_pred HHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEe
Confidence 45554 7899999999999998521 45699999986
No 241
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=93.47 E-value=0.055 Score=50.22 Aligned_cols=27 Identities=11% Similarity=-0.077 Sum_probs=24.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+. .+++.||||.+
T Consensus 190 ~~lG~G~fg~Vy~~~~---~~~~~vavK~~ 216 (452)
T 1fmk_A 190 VKLGQGCFGEVWMGTW---NGTTRVAIKTL 216 (452)
T ss_dssp EEEEECSSCEEEEEEE---TTTEEEEEEEC
T ss_pred eeecCCCCeEEEEEEE---CCCceEEEEEe
Confidence 7899999999999999 67788999975
No 242
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=93.45 E-value=0.057 Score=47.09 Aligned_cols=28 Identities=14% Similarity=0.030 Sum_probs=23.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||.+
T Consensus 35 ~~lg~G~~g~V~~~~~~--~~~~~vavK~~ 62 (317)
T 2buj_A 35 QKLGEGGFSYVDLVEGL--HDGHFYALKRI 62 (317)
T ss_dssp EEEEC--CEEEEEEEET--TTCCEEEEEEE
T ss_pred EEecCCCCeEEEEEEec--CCCcEEEEEEE
Confidence 78999999999999975 78999999975
No 243
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=93.41 E-value=0.057 Score=46.87 Aligned_cols=26 Identities=8% Similarity=-0.003 Sum_probs=23.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+. +++.||||.+
T Consensus 37 ~~lg~G~~g~Vy~~~~----~~~~vavK~~ 62 (307)
T 2nru_A 37 NKMGEGGFGVVYKGYV----NNTTVAVKKL 62 (307)
T ss_dssp CEEEECSSEEEEEEES----SSCEEEEEEE
T ss_pred CccccCCCeEEEEEEE----CCceEEEEEE
Confidence 7899999999999987 5889999975
No 244
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=93.39 E-value=0.057 Score=47.11 Aligned_cols=28 Identities=4% Similarity=-0.139 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 40 ~~lg~G~~g~Vy~~~~~--~~~~~vaiK~~ 67 (309)
T 2h34_A 40 RLVGRGGMGDVYEAEDT--VRERIVALKLM 67 (309)
T ss_dssp EEEEECSSSEEEEEEET--TTTEEEEEEEC
T ss_pred EEEcCCCCeeEEEEEEc--CCCeEEEEEec
Confidence 78999999999999974 68999999986
No 245
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=93.37 E-value=0.043 Score=47.74 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=27.6
Q ss_pred hcCCc--ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233 290 TEGFD--YLIQFPKFESFALSFLFR---SSTGTFLIIIFY 324 (325)
Q Consensus 290 t~nf~--~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~ 324 (325)
.++|. ..||+|+||.||+++... ..+|+.||||++
T Consensus 26 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~ 65 (316)
T 2xir_A 26 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKML 65 (316)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEE
T ss_pred hhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEec
Confidence 44554 789999999999998532 367799999986
No 246
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=93.36 E-value=0.044 Score=50.52 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=25.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||.+
T Consensus 32 ~~lG~G~~g~V~~a~~~--~~~~~vAiK~~ 59 (432)
T 3n9x_A 32 HLIGRGSYGYVYLAYDK--NTEKNVAIKKV 59 (432)
T ss_dssp EEEEEETTEEEEEEEET--TTTEEEEEEEE
T ss_pred EEEeecCCEEEEEEEEC--CCCcEEEEEEe
Confidence 78999999999999975 78999999976
No 247
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=93.30 E-value=0.041 Score=49.60 Aligned_cols=28 Identities=14% Similarity=0.053 Sum_probs=21.3
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||++.-. .+|+.||||.+
T Consensus 35 ~~lG~G~~g~V~~a~~~--~~~~~vaiK~~ 62 (367)
T 2fst_X 35 SPVGSGAYGSVCAAFDT--KTGLRVAVKKL 62 (367)
T ss_dssp EECC----CCEEEEEET--TTTEEEEEEEC
T ss_pred eEEeecCCeEEEEEEEC--CCCCEEEEEEe
Confidence 68999999999999864 78999999985
No 248
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=93.26 E-value=0.054 Score=47.88 Aligned_cols=28 Identities=7% Similarity=-0.203 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||+|++
T Consensus 47 ~~lg~G~~g~Vy~~~~~--~~~~~~a~K~~ 74 (335)
T 2owb_A 47 RFLGKGGFAKCFEISDA--DTKEVFAGKIV 74 (335)
T ss_dssp EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred EEEeeCCCeEEEEEEEC--CCCCEEEEEEe
Confidence 78999999999999985 77899999985
No 249
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=93.16 E-value=0.06 Score=52.15 Aligned_cols=29 Identities=10% Similarity=-0.041 Sum_probs=24.7
Q ss_pred eeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 296 LIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 296 ~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
.||+|+||.||+|+.....+++.||||++
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~ 371 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVL 371 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEEC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEc
Confidence 69999999999999854456788999985
No 250
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=93.16 E-value=0.065 Score=49.98 Aligned_cols=28 Identities=7% Similarity=-0.211 Sum_probs=25.2
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||++.-. .+|+.||||.+
T Consensus 68 ~~lG~G~~g~V~~a~~~--~~~~~vAiK~~ 95 (464)
T 3ttj_A 68 KPIGSGAQGIVCAAYDA--VLDRNVAIKKL 95 (464)
T ss_dssp EEEEECSSCEEEEEEET--TTTEEEEEEEE
T ss_pred EEeecCCCeEEEEEEEC--CCCCEEEEEEE
Confidence 78999999999999875 78999999986
No 251
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=93.12 E-value=0.065 Score=49.67 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=23.7
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+. +|+.||||.+
T Consensus 199 ~~lG~G~fg~V~~~~~----~~~~vavK~~ 224 (450)
T 1k9a_A 199 QTIGKGEFGDVMLGDY----RGNKVAVKCI 224 (450)
T ss_dssp EEEEECSSEEEEEEEE----TTEEEEEEEE
T ss_pred eeecCcCCeeEEEEEe----cCCeEEEEEe
Confidence 7899999999999998 3889999975
No 252
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=93.11 E-value=0.075 Score=46.55 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=24.0
Q ss_pred ceeecCCCcEEEEEeee--cCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLF--RSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~--~~~~~~~vav~~~ 324 (325)
..||+|+||.||++... ...+|+.||||++
T Consensus 37 ~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~ 68 (318)
T 3lxp_A 37 RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKAL 68 (318)
T ss_dssp EEEEECSSEEEEEEEECSCC--CCEEEEEEEE
T ss_pred heecCCCCeEEEEEEEccCCCCCCcEEEEEEe
Confidence 68999999999998763 2358899999986
No 253
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=93.01 E-value=0.061 Score=47.43 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=26.9
Q ss_pred HhcCCc--ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 289 ATEGFD--YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 289 ~t~nf~--~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..++|. ..||+|+||.||+++. +|+.||||.+
T Consensus 40 ~~~~y~~~~~lg~G~~g~Vy~~~~----~~~~vavK~~ 73 (342)
T 1b6c_B 40 IARTIVLQESIGKGRFGEVWRGKW----RGEEVAVKIF 73 (342)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEE----TTEEEEEEEE
T ss_pred ccccEEEEeeecCCCCcEEEEEEE----cCccEEEEEe
Confidence 344554 8899999999999988 4999999986
No 254
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=92.97 E-value=0.07 Score=50.20 Aligned_cols=28 Identities=7% Similarity=-0.168 Sum_probs=23.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 42 ~~lG~G~~g~V~~~~~~--~~~~~~aiK~~ 69 (504)
T 3q5i_A 42 RKLGSGAYGEVLLCKEK--NGHSEKAIKVI 69 (504)
T ss_dssp EEEEC--CEEEEEEEET--TTCCEEEEEEE
T ss_pred eEecccCCeEEEEEEEC--CCCcEEEEEEE
Confidence 78999999999999985 67899999985
No 255
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=92.93 E-value=0.073 Score=50.57 Aligned_cols=27 Identities=11% Similarity=-0.077 Sum_probs=24.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+. .+++.||||.+
T Consensus 273 ~~lG~G~fg~Vy~~~~---~~~~~vavK~~ 299 (535)
T 2h8h_A 273 VKLGQGCFGEVWMGTW---NGTTRVAIKTL 299 (535)
T ss_dssp EEEEECSSEEEEEEEE---TTTEEEEEEEE
T ss_pred eecccCCCeEEEEEEE---CCCceEEEEEe
Confidence 7899999999999999 67788999986
No 256
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=92.91 E-value=0.051 Score=48.67 Aligned_cols=30 Identities=13% Similarity=0.020 Sum_probs=23.2
Q ss_pred ceeecCCCcEEEEEeeecC---CCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRS---STGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~---~~~~~vav~~~ 324 (325)
..||+|+||.||++..... ..++.||||+.
T Consensus 41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~ 73 (364)
T 3op5_A 41 LPIGQGGFGCIYLADMNSSESVGSDAPCVVKVE 73 (364)
T ss_dssp EECCCC-CCEEEEEEECCSSCCCTTCSEEEEEE
T ss_pred EEEecCCCeEEEEeeecCccccccccceEEEEe
Confidence 7899999999999988411 23689999974
No 257
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=92.76 E-value=0.074 Score=51.74 Aligned_cols=30 Identities=3% Similarity=-0.024 Sum_probs=24.9
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|......+++.||||.+
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~ 404 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKIL 404 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEe
Confidence 479999999999997743456789999975
No 258
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=92.75 E-value=0.069 Score=48.08 Aligned_cols=30 Identities=3% Similarity=-0.043 Sum_probs=24.4
Q ss_pred ceeecCCCcEEEEEeeec-----CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR-----SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~-----~~~~~~vav~~~ 324 (325)
..||+|+||.||+++... ..+++.||||++
T Consensus 87 ~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~ 121 (370)
T 2psq_A 87 KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKML 121 (370)
T ss_dssp EEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEEC
T ss_pred eEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEe
Confidence 789999999999998641 245678999985
No 259
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=92.73 E-value=0.06 Score=47.31 Aligned_cols=30 Identities=3% Similarity=-0.122 Sum_probs=21.0
Q ss_pred ceeecCCCcEEEEEeee---cCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLF---RSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~---~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++.. ...+|+.||||.+
T Consensus 36 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~ 68 (327)
T 2yfx_A 36 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTL 68 (327)
T ss_dssp EECC--CSSCEEEEEC--------CCEEEEEEC
T ss_pred EEEcCCCCeeEEEEEEcCCCCCCccceEEEEEe
Confidence 78999999999999963 1257889999986
No 260
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=92.70 E-value=0.069 Score=49.87 Aligned_cols=28 Identities=14% Similarity=-0.025 Sum_probs=25.6
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 32 ~~lg~G~~g~V~~~~~~--~~~~~~avK~~ 59 (484)
T 3nyv_A 32 RVLGKGSFGEVILCKDK--ITGQECAVKVI 59 (484)
T ss_dssp EEEEEETTEEEEEEEET--TTCCEEEEEEE
T ss_pred eEEecCCCEEEEEEEEC--CCCCEEEEEEE
Confidence 78999999999999985 68999999986
No 261
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=92.61 E-value=0.091 Score=46.14 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=25.4
Q ss_pred ceeecCCCcEEEEEeeec--CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR--SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~--~~~~~~vav~~~ 324 (325)
..||+|+||.||+++... ..+|+.||||.+
T Consensus 47 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~ 78 (326)
T 2w1i_A 47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL 78 (326)
T ss_dssp EEEECCSSEEEEEEEECTTSSSCCEEEEEEEE
T ss_pred eeeccCCCeEEEEEEeccccCCCceEEEEEEe
Confidence 789999999999998531 268999999986
No 262
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=92.36 E-value=0.05 Score=51.19 Aligned_cols=28 Identities=0% Similarity=-0.197 Sum_probs=25.2
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+.. .+++.||||.+
T Consensus 226 ~~lG~G~fg~Vy~~~~~--~~~~~vavK~~ 253 (495)
T 1opk_A 226 HKLGGGQYGEVYEGVWK--KYSLTVAVKTL 253 (495)
T ss_dssp EESGGGTTSSEEEEEEG--GGTEEEEEEEC
T ss_pred eEecCCCCeEEEEEEEc--CCCeEEEEEEe
Confidence 78999999999999995 56899999975
No 263
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=92.30 E-value=0.074 Score=46.29 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=23.3
Q ss_pred ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR-SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~ 324 (325)
..||+|+||.||+++... ..+++.||||.+
T Consensus 40 ~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~ 70 (313)
T 3brb_A 40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTM 70 (313)
T ss_dssp EEEEC-CCCCEEEEEEECTTSCEEEEEEEEC
T ss_pred cceeecCCeEEEEEEEeccCCceeEEEEEEE
Confidence 779999999999998852 135668999986
No 264
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=92.21 E-value=0.084 Score=46.62 Aligned_cols=30 Identities=3% Similarity=0.046 Sum_probs=25.0
Q ss_pred ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR---SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~ 324 (325)
..||+|+||.||+++... ..+++.||||.+
T Consensus 51 ~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~ 83 (344)
T 1rjb_A 51 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKML 83 (344)
T ss_dssp EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEE
T ss_pred eeecCCCCceeEEeeeeccccCCcceEEEEEec
Confidence 789999999999999631 256789999986
No 265
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=92.16 E-value=0.11 Score=48.82 Aligned_cols=28 Identities=11% Similarity=-0.173 Sum_probs=22.4
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++-. .+|+.||||++
T Consensus 43 ~~lG~G~~g~V~~~~~~--~~~~~~aiK~~ 70 (494)
T 3lij_A 43 KKLGSGAYGEVLLCRDK--VTHVERAIKII 70 (494)
T ss_dssp EEEECC---EEEEEEET--TTCCEEEEEEE
T ss_pred eEEecCCCEEEEEEEEC--CCCcEEEEEEE
Confidence 78999999999999985 68999999985
No 266
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=92.16 E-value=0.092 Score=47.42 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=25.5
Q ss_pred ceeecC--CCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFP--KFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g--~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+| |||.||+++-. .+|+.||||.+
T Consensus 31 ~~lG~G~~~~g~V~~~~~~--~~~~~vavK~~ 60 (389)
T 3gni_B 31 TVIGKGFEDLMTVNLARYK--PTGEYVTVRRI 60 (389)
T ss_dssp EEEEEETTTTEEEEEEEET--TTCCEEEEEEE
T ss_pred ecccCCcCCceEEEEEEEc--CCCCEEEEEEe
Confidence 589999 99999999985 68999999986
No 267
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=92.07 E-value=0.1 Score=45.91 Aligned_cols=30 Identities=3% Similarity=-0.016 Sum_probs=22.9
Q ss_pred ceeecCCCcEEEEEeeec-----CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR-----SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~-----~~~~~~vav~~~ 324 (325)
..||+|+||.||+++... ..+++.||||.+
T Consensus 41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~ 75 (334)
T 2pvf_A 41 KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKML 75 (334)
T ss_dssp EEEEECSSCEEEEEEETTCSTTCC---CEEEEEEC
T ss_pred eEEeecCceeEEEeEeccccccccccceEEEEeee
Confidence 789999999999998731 246789999975
No 268
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=91.74 E-value=0.12 Score=45.53 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=24.2
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||++.. +|+.||||.+
T Consensus 37 ~~lg~G~~g~V~~~~~----~~~~vavK~~ 62 (348)
T 2pml_X 37 RTLNQGKFNKIILCEK----DNKFYALKKY 62 (348)
T ss_dssp EEEECCSSCCEEEEEE----TTEEEEEEEE
T ss_pred EEEcCCCCeEEEEEEc----CCceEEEEEe
Confidence 7899999999999998 7999999986
No 269
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=91.63 E-value=0.1 Score=46.43 Aligned_cols=30 Identities=0% Similarity=-0.235 Sum_probs=22.2
Q ss_pred ceeecCCCcEEEEEeeecC------CCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRS------STGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~------~~~~~vav~~~ 324 (325)
..||+|+||.||+++.... .+|+.||||++
T Consensus 48 ~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~ 83 (352)
T 2jii_A 48 SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLD 83 (352)
T ss_dssp EEEEEETTEEEEEEEECC-----------CEEEEEE
T ss_pred EEecCCCCeEEEEEeecCCccccccccCceEEEEEe
Confidence 7899999999999998410 04899999975
No 270
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=91.39 E-value=0.11 Score=46.81 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=22.8
Q ss_pred ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR-SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+... ...+..||||.+
T Consensus 95 ~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~ 125 (373)
T 3c1x_A 95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSL 125 (373)
T ss_dssp EEEECCSSSEEEEEEEEETTTEEEEEEEEEC
T ss_pred cEeeeCCCeEEEEEEEECCCCcEEEEEEEEc
Confidence 689999999999999841 122357899875
No 271
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=91.19 E-value=0.15 Score=44.64 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=23.4
Q ss_pred ceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR---SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~ 324 (325)
..||+|+||.||+++... ...+..||||.+
T Consensus 52 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~ 84 (333)
T 2i1m_A 52 KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKML 84 (333)
T ss_dssp EEEEECSSEEEEEEEETTCSSSCCCCEEEEEEE
T ss_pred eEeccCCCcceEEEEecCCCcccchhHHHHHhc
Confidence 789999999999999741 123358999975
No 272
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=90.83 E-value=0.094 Score=46.53 Aligned_cols=30 Identities=13% Similarity=0.023 Sum_probs=18.8
Q ss_pred ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR-SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~ 324 (325)
..||+|+||.||+++... ..+++.||||.+
T Consensus 43 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~ 73 (345)
T 2v62_A 43 KKIGSGGFGLIYLAFPTNKPEKDARHVVKVE 73 (345)
T ss_dssp EEC------CEEEEEESSSCGGGCCEEEEEE
T ss_pred eeEeecCCeEEEEEEecCCCCccceEEEEee
Confidence 789999999999999841 126899999975
No 273
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=90.71 E-value=0.16 Score=46.03 Aligned_cols=27 Identities=15% Similarity=-0.057 Sum_probs=22.5
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++. .++..||||.+
T Consensus 46 ~~lG~G~~g~V~~a~~---~~~~~~aikk~ 72 (394)
T 4e7w_A 46 KVIGNGSFGVVFQAKL---VESDEVAIKKV 72 (394)
T ss_dssp EEEEEETTEEEEEEEE---TTTEEEEEEEE
T ss_pred EEEeeCCCeEEEEEEE---CCCCeEEEEEE
Confidence 7899999999999998 55666888754
No 274
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=90.41 E-value=0.2 Score=45.09 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=24.1
Q ss_pred ceeecCCCcEEEEEeeec-----CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR-----SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~-----~~~~~~vav~~~ 324 (325)
..||+|+||.||+++... ..+++.||||++
T Consensus 75 ~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~ 109 (382)
T 3tt0_A 75 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKML 109 (382)
T ss_dssp EEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEE
T ss_pred eEEecCCCeEEEEEEEccccccccccceEEEEEee
Confidence 789999999999998641 134578999985
No 275
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=89.54 E-value=0.19 Score=43.82 Aligned_cols=31 Identities=10% Similarity=-0.133 Sum_probs=24.8
Q ss_pred cceeecCCCcEEEEEeeec---CCCCcEEEEEEe
Q 045233 294 DYLIQFPKFESFALSFLFR---SSTGTFLIIIFY 324 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~---~~~~~~vav~~~ 324 (325)
...||+|+||.||+|+... ..+++.||||.+
T Consensus 30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~ 63 (322)
T 1p4o_A 30 SRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTV 63 (322)
T ss_dssp EEEEEECSSSEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred eeEeccCCceEEEeeeecCccCCCCceEEEEEec
Confidence 3689999999999998731 235789999975
No 276
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=89.49 E-value=0.25 Score=43.02 Aligned_cols=25 Identities=8% Similarity=-0.124 Sum_probs=20.3
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+. ...||||+.
T Consensus 42 ~~lG~G~~g~Vy~~~~-----~~~~avk~~ 66 (307)
T 3lb7_A 42 TRIGSGSFGTVYKGKW-----HGDVAVKIL 66 (307)
T ss_dssp EEEEECSSCEEEEEES-----SSEEEEEEC
T ss_pred eEecCCCCeEEEEEEE-----CCEEEEEEE
Confidence 7899999999999988 335777753
No 277
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.44 E-value=0.18 Score=49.42 Aligned_cols=29 Identities=10% Similarity=-0.049 Sum_probs=24.7
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+||||.||++... ..+|+.||||.+
T Consensus 86 ~~lg~G~~g~Vy~a~~~-~~~~~~vaiK~~ 114 (681)
T 2pzi_A 86 GCIAHGGLGWIYLALDR-NVNGRPVVLKGL 114 (681)
T ss_dssp EEEEEETTEEEEEEEEG-GGTTEEEEEEES
T ss_pred EEEeeCCCeEEEEEEEc-CCCCcEEEEEEe
Confidence 78999999999999873 126899999975
No 278
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=89.35 E-value=0.23 Score=42.63 Aligned_cols=31 Identities=10% Similarity=0.017 Sum_probs=22.0
Q ss_pred cceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233 294 DYLIQFPKFESFALSFLFR-SSTGTFLIIIFY 324 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~ 324 (325)
...||+|+||.||+|+... ...+..||||.+
T Consensus 30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~ 61 (298)
T 3f66_A 30 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSL 61 (298)
T ss_dssp EEEEEEETTEEEEEEEEC-----CEEEEEEEE
T ss_pred cceeeecCCceEEEEEEecCCCceeEEEEEec
Confidence 3689999999999999731 123346888864
No 279
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=87.54 E-value=0.33 Score=42.06 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=20.9
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+.. ..||||.+
T Consensus 39 ~~lg~G~~g~V~~~~~~-----~~~avk~~ 63 (319)
T 2y4i_B 39 ELIGKGRFGQVYHGRWH-----GEVAIRLI 63 (319)
T ss_dssp CBCCCSSSSEEEEEEES-----SSEEEEEC
T ss_pred eEeccCCceEEEEEEEc-----CeEEEEEe
Confidence 78999999999999982 34888875
No 280
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=85.73 E-value=0.57 Score=45.64 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=23.9
Q ss_pred ceeecCCCcEEEEEeeec-CCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFR-SSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~-~~~~~~vav~~~ 324 (325)
..||+|+||.||+|+... ...+..||||.+
T Consensus 396 ~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~ 426 (656)
T 2j0j_A 396 RCIGEGQFGDVHQGIYMSPENPAMAVAIKTC 426 (656)
T ss_dssp EEEECCSSCCEEEEEECCSSSCCEEEEEEEC
T ss_pred eEEeeCCCEEEEEEEEecCCCccEEEEEEEe
Confidence 679999999999999842 234678999974
No 281
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=83.33 E-value=0.66 Score=40.46 Aligned_cols=31 Identities=10% Similarity=-0.089 Sum_probs=21.1
Q ss_pred cceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 294 DYLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
...||+|+||.||+++.........||||.+
T Consensus 30 ~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~ 60 (327)
T 1fvr_A 30 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRM 60 (327)
T ss_dssp EEEEECGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred eeeeecCCCceEEEEEEccCCcccceeeeee
Confidence 3689999999999999860000013488764
No 282
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=81.23 E-value=0.99 Score=42.80 Aligned_cols=26 Identities=15% Similarity=-0.173 Sum_probs=16.9
Q ss_pred ceeecCCCcEEEEEeeecCCCCcEEEEEEe
Q 045233 295 YLIQFPKFESFALSFLFRSSTGTFLIIIFY 324 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~~~~~~~vav~~~ 324 (325)
..||+|+||.||+++. .++.+|+|.+
T Consensus 342 ~~LG~G~fg~Vy~~~~----~~~~~~~k~~ 367 (540)
T 3en9_A 342 HLIGKGAEADIKRDSY----LDFDVIIKER 367 (540)
T ss_dssp ------CCEEEEEEEC----SSCEEEEEEE
T ss_pred CEEeeCCCEEEEEEEE----CCCeEEEEEE
Confidence 6899999999999955 5888888864
No 283
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.96 E-value=3.2 Score=29.55 Aligned_cols=48 Identities=10% Similarity=0.020 Sum_probs=31.9
Q ss_pred ccccccCccccCCCCCCCEEEeccccCcCCCCCcccccCCCcCCEEecccC
Q 045233 76 NAQAQLSQLNFSCFPNLESLRIQAYYYGFTGSIPSDISALSKLQLLDLSLN 126 (325)
Q Consensus 76 n~~~~l~~~~~~~l~~L~~L~l~~~~n~~~~~~p~~l~~l~~L~~L~Ls~n 126 (325)
..+..++...|.++..|+.+.+ . ..++..-...|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~i--P-~~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITV--Q-PNIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEE--C-TTSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEc--C-CchheEcHHHHhccCCccEEEEcCC
Confidence 3556667777888888888888 2 3344444556777777777776543
No 284
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=71.75 E-value=1.2 Score=39.82 Aligned_cols=18 Identities=17% Similarity=-0.131 Sum_probs=9.3
Q ss_pred ceeecCCCcEEEEEeeec
Q 045233 295 YLIQFPKFESFALSFLFR 312 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~~ 312 (325)
..||+||||.||+++-..
T Consensus 30 ~~lG~G~fg~V~~a~~~~ 47 (350)
T 4b9d_A 30 QKIGEGSFGKAILVKSTE 47 (350)
T ss_dssp EEC------CEEEEEETT
T ss_pred EEEecCCCeEEEEEEECC
Confidence 589999999999997543
No 285
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.71 E-value=18 Score=25.51 Aligned_cols=49 Identities=12% Similarity=-0.003 Sum_probs=33.0
Q ss_pred cCcCCCCCcccccCCCcCCEEecccCCCCCCCchhhcCCcccceeecccC
Q 045233 101 YYGFTGSIPSDISALSKLQLLDLSLNRLSGTIPSNIGNLRNLVHLDLGNN 150 (325)
Q Consensus 101 ~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 150 (325)
+..++..-...|.++++|+.+.+..+ ++..-...|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34455555566788888888888765 44355566778888888877653
No 286
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=64.22 E-value=3.4 Score=35.77 Aligned_cols=17 Identities=12% Similarity=0.000 Sum_probs=14.9
Q ss_pred ceeecCCCcEEEEEeee
Q 045233 295 YLIQFPKFESFALSFLF 311 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~ 311 (325)
..||+|+||.||+|+..
T Consensus 30 ~~lg~G~~g~Vy~~~~~ 46 (322)
T 3soc_A 30 EVKARGRFGCVWKAQLL 46 (322)
T ss_dssp EEEECSTTCEEEEEEET
T ss_pred heecccCceEEEEEEEC
Confidence 58999999999999753
No 287
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=64.12 E-value=3 Score=35.41 Aligned_cols=17 Identities=12% Similarity=-0.103 Sum_probs=14.8
Q ss_pred ceeecCCCcEEEEEeee
Q 045233 295 YLIQFPKFESFALSFLF 311 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~ 311 (325)
..||+|+||.||+|+..
T Consensus 30 ~~lG~G~~g~Vy~~~~~ 46 (289)
T 3og7_A 30 QRIGSGSFGTVYKGKWH 46 (289)
T ss_dssp EEEEECSSEEEEEEESS
T ss_pred eEecCCCCeEEEEEEEc
Confidence 58999999999998753
No 288
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=49.81 E-value=6.5 Score=32.98 Aligned_cols=17 Identities=6% Similarity=-0.140 Sum_probs=11.9
Q ss_pred ceeecCCCcEEEEEeee
Q 045233 295 YLIQFPKFESFALSFLF 311 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~ 311 (325)
..||+|+||.||++...
T Consensus 30 ~~lg~G~~g~V~~~~~~ 46 (283)
T 3gen_A 30 KELGTGQFGVVKYGKWR 46 (283)
T ss_dssp EECC---CEEEEEEEET
T ss_pred hhcCCCCCceEEEEEEc
Confidence 58999999999998754
No 289
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=49.80 E-value=11 Score=33.07 Aligned_cols=18 Identities=11% Similarity=-0.149 Sum_probs=16.0
Q ss_pred cceeecCCCcEEEEEeee
Q 045233 294 DYLIQFPKFESFALSFLF 311 (325)
Q Consensus 294 ~~~ig~g~~g~vy~g~l~ 311 (325)
...||+|+||.||+++-.
T Consensus 29 ~~~lG~G~~g~V~~~~~~ 46 (351)
T 3c0i_A 29 CEVIGKGPFSVVRRCINR 46 (351)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred eeEEeeCCCEEEEEEEEC
Confidence 368999999999999875
No 290
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=49.43 E-value=7.2 Score=34.06 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=15.1
Q ss_pred ceeecCCCcEEEEEeee
Q 045233 295 YLIQFPKFESFALSFLF 311 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~ 311 (325)
..||+|+||.||+++-.
T Consensus 30 ~~lg~G~~g~V~~~~~~ 46 (353)
T 3coi_A 30 THVGSGAYGSVCSAIDK 46 (353)
T ss_dssp EEEEECSSEEEEEEEET
T ss_pred eeEecCCCeEEEEEEEC
Confidence 58999999999999754
No 291
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=48.41 E-value=11 Score=32.56 Aligned_cols=17 Identities=6% Similarity=-0.242 Sum_probs=15.7
Q ss_pred ceeecCCCcEEEEEeee
Q 045233 295 YLIQFPKFESFALSFLF 311 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~ 311 (325)
..||+|+||.||+++-.
T Consensus 31 ~~lg~G~~g~V~~~~~~ 47 (331)
T 4aaa_A 31 GLVGEGSYGMVMKCRNK 47 (331)
T ss_dssp EEGGGGTTSSEEEEEET
T ss_pred eEEeecCCEEEEEEEEC
Confidence 58999999999999985
No 292
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=48.02 E-value=6.2 Score=34.42 Aligned_cols=17 Identities=6% Similarity=-0.285 Sum_probs=14.8
Q ss_pred ceeecCCCcEEEEEeee
Q 045233 295 YLIQFPKFESFALSFLF 311 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~ 311 (325)
..||+|+||.||+++-.
T Consensus 30 ~~lG~G~~g~Vy~a~~~ 46 (335)
T 3dls_A 30 SPLGSGAFGFVWTAVDK 46 (335)
T ss_dssp EECSSSSSCSEEEEEET
T ss_pred eEEEecCCEEEEEEEEC
Confidence 58999999999999643
No 293
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=46.63 E-value=8.5 Score=34.02 Aligned_cols=16 Identities=6% Similarity=-0.201 Sum_probs=14.5
Q ss_pred ceeecCCCcEEEEEee
Q 045233 295 YLIQFPKFESFALSFL 310 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l 310 (325)
..||+|+||.||++.-
T Consensus 31 ~~lG~G~~g~V~~~~~ 46 (371)
T 2xrw_A 31 KPIGSGAQGIVCAAYD 46 (371)
T ss_dssp EEEEECSSEEEEEEEE
T ss_pred eeeEecCCEEEEEEEE
Confidence 5899999999999975
No 294
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=43.82 E-value=13 Score=31.85 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=15.8
Q ss_pred ceeecCCCcEEEEEeee
Q 045233 295 YLIQFPKFESFALSFLF 311 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~ 311 (325)
..||+|+||.||+++..
T Consensus 30 ~~lg~G~~g~Vy~~~~~ 46 (326)
T 2x7f_A 30 ELVGNGTYGQVYKGRHV 46 (326)
T ss_dssp EEEEEETTEEEEEEEET
T ss_pred EEeccCCCEEEEEEEEC
Confidence 69999999999999985
No 295
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=43.55 E-value=13 Score=32.85 Aligned_cols=17 Identities=0% Similarity=-0.209 Sum_probs=9.6
Q ss_pred ceeecCCCcEEEEEeee
Q 045233 295 YLIQFPKFESFALSFLF 311 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~ 311 (325)
..||+|+||.||+++-.
T Consensus 31 ~~lG~G~~g~V~~a~~~ 47 (367)
T 1cm8_A 31 QPVGSGAYGAVCSAVDG 47 (367)
T ss_dssp EEC------CEEEEEET
T ss_pred EEeeecCCeEEEEEEEC
Confidence 68999999999999975
No 296
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=43.02 E-value=16 Score=31.04 Aligned_cols=17 Identities=0% Similarity=-0.435 Sum_probs=9.7
Q ss_pred ceeecCCCcEEEEEeee
Q 045233 295 YLIQFPKFESFALSFLF 311 (325)
Q Consensus 295 ~~ig~g~~g~vy~g~l~ 311 (325)
..||+|+||.||++...
T Consensus 31 ~~lg~G~~g~V~~~~~~ 47 (318)
T 2dyl_A 31 GEMGSGTCGQVWKMRFR 47 (318)
T ss_dssp EEC------CEEEEEET
T ss_pred ceeeecCCeeEEEEEEe
Confidence 58999999999999985
Done!