BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045234
         (299 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
 pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
 pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
          Complexed With H3 Peptide 1-7
 pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
          Complexed With H3 Peptide 1-15
 pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
          Complexed With H3k9me3 Peptide
 pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
          Complexed With H3k9me3 Peptide
          Length = 107

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 2  ARSKRLKKEEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWH 61
          AR  + + +++ E +CF+C  GGEL +CD   C K YH  C++  +       KW C WH
Sbjct: 3  ARKIKTEPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYG---KWECPWH 59

Query: 62 FCGVCRKASKFYCFCCPSAVCK 83
           C  C  A+  +C  CP + CK
Sbjct: 60 QCDECSSAAVSFCEFCPHSFCK 81


>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(13-32)k23ac Peptide
 pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(23-31)k27ac Peptide
 pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(23-31)k27ac Peptide
 pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H4(14-19)k16ac Peptide
 pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H4(14-19)k16ac Peptide
 pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(1-10)k4 Peptide
 pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(1-10)k4 Peptide
 pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(1-10)k4 Peptide
 pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(1-10)k4 Peptide
          Length = 184

 Score = 34.3 bits (77), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 10/60 (16%)

Query: 13 SEIWCFKCKHGGELRLCDNTRCLKVYHPEC-VDKDESFLAAKTKWICNWHFCGVCRKASK 71
          +E WC  C++GGEL  C+  +C KV+H  C V    +F +   +WIC +     CR  SK
Sbjct: 3  NEDWCAVCQNGGELLCCE--KCPKVFHLSCHVPTLTNFPSG--EWICTF-----CRDLSK 53


>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4
          (Mi2b)
          Length = 61

 Score = 33.5 bits (75), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 16 WCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWIC 58
          +C  C+ GGE+ LCD   C + YH  C+D D    A + KW C
Sbjct: 13 YCEVCQQGGEIILCDT--CPRAYHMVCLDPDME-KAPEGKWSC 52


>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
 pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
          Length = 60

 Score = 33.5 bits (75), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 12 ISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWIC 58
          I E +C  C+  G+L +CD   C +VYH +C+D     +  K  WIC
Sbjct: 3  IHEDFCSVCRKSGQLLMCDT--CSRVYHLDCLDPPLKTI-PKGMWIC 46


>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
          Length = 207

 Score = 32.3 bits (72), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 10/63 (15%)

Query: 10 EEISEIWCFKCKHGGELRLCDNTRCLKVYHPEC-VDKDESFLAAKTKWICNWHFCGVCRK 68
          ++ +E WC  C++GG+L  C+  +C KV+H  C V    SF +    WIC +     CR 
Sbjct: 3  DDPNEDWCAVCQNGGDLLCCE--KCPKVFHLTCHVPTLLSFPSG--DWICTF-----CRD 53

Query: 69 ASK 71
            K
Sbjct: 54 IGK 56


>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger
          Protein 21a
          Length = 56

 Score = 32.0 bits (71), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 14 EIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWIC 58
          E +C  C+  G+L +CD   C +VYH +C+D     +  K  WIC
Sbjct: 9  EDFCSVCRKSGQLLMCDT--CSRVYHLDCLDPPLKTI-PKGMWIC 50


>pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate
           Transaminase 1 (Got1)
 pdb|3II0|B Chain B, Crystal Structure Of Human Glutamate Oxaloacetate
           Transaminase 1 (Got1)
 pdb|3II0|C Chain C, Crystal Structure Of Human Glutamate Oxaloacetate
           Transaminase 1 (Got1)
 pdb|3II0|D Chain D, Crystal Structure Of Human Glutamate Oxaloacetate
           Transaminase 1 (Got1)
          Length = 422

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 226 ARTLQEQNNKNTMVACRNHTQE---ALVKAMQLHVTCHWNMWNLYLRNHHLQGLLNTMEF 282
           AR     NNKNT V   + T E   A+  A        +  W+   R   LQG LN +E 
Sbjct: 109 ARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLEN 168

Query: 283 LP 284
            P
Sbjct: 169 AP 170


>pdb|1BQG|A Chain A, The Structure Of The D-Glucarate Dehydratase Protein From
           Pseudomonas Putida
          Length = 451

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 22/33 (66%)

Query: 123 DRSDAGERNRFYFKGYWQKIKEKESLTPENVIS 155
           +++D G R+       W +++ KE+LTPE+V++
Sbjct: 164 NKTDLGYRSEHEADNEWFRLRNKEALTPESVVA 196


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.135    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,715,570
Number of Sequences: 62578
Number of extensions: 336921
Number of successful extensions: 799
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 23
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)