Query 045234
Match_columns 299
No_of_seqs 275 out of 756
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:40:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v32_A AT5G08430, hypothetical 99.9 1.2E-26 4.2E-31 187.6 5.1 80 203-285 6-94 (101)
2 4gne_A Histone-lysine N-methyl 99.9 9.6E-24 3.3E-28 172.3 5.7 96 2-101 3-98 (107)
3 1v31_A Hypothetical protein RA 99.8 7.4E-21 2.5E-25 151.4 3.8 66 216-285 16-86 (93)
4 1uhr_A SWI/SNF related, matrix 99.8 8.2E-21 2.8E-25 151.2 3.0 66 216-285 16-86 (93)
5 2ysm_A Myeloid/lymphoid or mix 99.7 9.7E-18 3.3E-22 135.8 5.1 91 11-105 4-102 (111)
6 2kwj_A Zinc finger protein DPF 99.6 1.6E-16 5.4E-21 130.0 2.5 93 14-109 1-110 (114)
7 3v43_A Histone acetyltransfera 99.5 1.5E-15 5E-20 123.8 3.4 91 12-105 3-110 (112)
8 3u5n_A E3 ubiquitin-protein li 99.4 5.9E-14 2E-18 124.8 5.3 117 9-148 2-123 (207)
9 3o36_A Transcription intermedi 99.4 1.5E-13 5.3E-18 119.9 5.0 118 12-149 2-124 (184)
10 1mm2_A MI2-beta; PHD, zinc fin 99.2 5.5E-12 1.9E-16 92.6 4.1 50 9-61 4-53 (61)
11 1fp0_A KAP-1 corepressor; PHD 99.2 1.5E-11 5E-16 97.1 4.3 49 9-60 20-68 (88)
12 1xwh_A Autoimmune regulator; P 99.2 1.4E-11 4.8E-16 91.6 3.6 48 10-60 4-51 (66)
13 2l5u_A Chromodomain-helicase-D 99.1 1.3E-11 4.4E-16 90.6 2.5 48 10-60 7-54 (61)
14 2puy_A PHD finger protein 21A; 99.1 2.4E-11 8.2E-16 88.6 3.0 47 11-60 2-48 (60)
15 2yql_A PHD finger protein 21A; 99.1 3.2E-11 1.1E-15 86.9 3.3 48 10-60 5-52 (56)
16 2lri_C Autoimmune regulator; Z 99.1 5.1E-11 1.7E-15 89.1 2.9 49 9-60 7-55 (66)
17 2lbm_A Transcriptional regulat 99.0 3.5E-11 1.2E-15 102.5 1.8 52 7-60 56-113 (142)
18 2l43_A N-teminal domain from h 99.0 1.4E-10 4.7E-15 91.2 1.5 44 12-60 23-71 (88)
19 2ro1_A Transcription intermedi 98.9 4E-10 1.4E-14 99.3 3.6 47 13-62 1-47 (189)
20 3ql9_A Transcriptional regulat 98.9 2E-10 6.8E-15 96.4 1.4 52 7-60 50-107 (129)
21 2ku3_A Bromodomain-containing 98.9 3.5E-10 1.2E-14 85.7 2.0 46 10-60 12-62 (71)
22 2e6r_A Jumonji/ARID domain-con 98.9 3.4E-10 1.2E-14 89.5 1.9 58 8-68 10-70 (92)
23 2yt5_A Metal-response element- 98.8 1.2E-09 4.1E-14 80.5 1.6 48 11-60 3-57 (66)
24 1f62_A Transcription factor WS 98.8 1.8E-09 6.2E-14 75.9 2.2 42 16-60 2-46 (51)
25 2e6s_A E3 ubiquitin-protein li 98.7 8.6E-09 2.9E-13 79.1 4.4 45 13-60 25-73 (77)
26 1wev_A Riken cDNA 1110020M19; 98.7 2.6E-09 8.8E-14 83.7 1.0 47 12-60 14-68 (88)
27 3asl_A E3 ubiquitin-protein li 98.7 9.8E-09 3.4E-13 77.3 3.0 42 16-60 20-65 (70)
28 1wen_A Inhibitor of growth fam 98.5 6.4E-08 2.2E-12 73.1 3.4 45 12-60 14-61 (71)
29 3c6w_A P28ING5, inhibitor of g 98.5 4.8E-08 1.6E-12 71.3 2.0 45 12-60 7-54 (59)
30 2vnf_A ING 4, P29ING4, inhibit 98.4 7.2E-08 2.5E-12 70.4 2.0 45 12-60 8-55 (60)
31 2g6q_A Inhibitor of growth pro 98.4 7.7E-08 2.6E-12 70.9 2.0 45 12-60 9-56 (62)
32 3v43_A Histone acetyltransfera 98.4 1.3E-07 4.4E-12 76.7 3.4 42 16-60 63-108 (112)
33 2ysm_A Myeloid/lymphoid or mix 98.4 9.7E-08 3.3E-12 76.8 2.4 48 16-68 56-106 (111)
34 1weu_A Inhibitor of growth fam 98.4 1.5E-07 5.2E-12 74.5 3.5 45 12-60 34-81 (91)
35 2k16_A Transcription initiatio 98.3 1.9E-07 6.4E-12 70.4 2.4 47 11-60 15-64 (75)
36 3ask_A E3 ubiquitin-protein li 98.3 1.8E-07 6.2E-12 85.0 2.5 45 14-61 174-222 (226)
37 3shb_A E3 ubiquitin-protein li 98.3 2.7E-07 9.1E-12 70.9 2.9 42 16-60 28-73 (77)
38 2kwj_A Zinc finger protein DPF 98.3 2.4E-07 8.1E-12 75.4 2.4 42 16-60 60-104 (114)
39 3shb_A E3 ubiquitin-protein li 98.3 4.7E-07 1.6E-11 69.5 3.8 54 52-106 18-76 (77)
40 2ri7_A Nucleosome-remodeling f 98.3 1E-07 3.6E-12 81.8 -0.2 107 12-149 6-116 (174)
41 3asl_A E3 ubiquitin-protein li 98.3 4.2E-07 1.4E-11 68.3 3.0 53 52-105 10-67 (70)
42 2jmi_A Protein YNG1, ING1 homo 98.2 6.1E-07 2.1E-11 70.9 3.1 44 12-59 24-70 (90)
43 2e6s_A E3 ubiquitin-protein li 98.1 1.2E-06 4.1E-11 67.1 3.5 51 54-105 20-75 (77)
44 2lv9_A Histone-lysine N-methyl 98.0 2.7E-06 9.2E-11 67.7 3.4 40 17-60 33-72 (98)
45 3ask_A E3 ubiquitin-protein li 97.9 4.7E-06 1.6E-10 75.8 3.3 53 52-105 166-223 (226)
46 2e6r_A Jumonji/ARID domain-con 97.8 1.4E-05 4.8E-10 62.9 3.3 55 52-107 7-66 (92)
47 1x4i_A Inhibitor of growth pro 97.7 1.3E-05 4.4E-10 60.3 2.3 45 12-60 4-51 (70)
48 2puy_A PHD finger protein 21A; 97.7 1.4E-05 4.8E-10 57.8 2.3 47 62-109 7-54 (60)
49 1mm2_A MI2-beta; PHD, zinc fin 97.7 2.2E-05 7.5E-10 57.2 3.2 43 62-105 11-54 (61)
50 2yql_A PHD finger protein 21A; 97.7 1.4E-05 4.8E-10 57.1 1.8 43 62-105 11-54 (56)
51 1fp0_A KAP-1 corepressor; PHD 97.7 1.9E-05 6.4E-10 62.2 2.7 43 62-105 27-70 (88)
52 2lri_C Autoimmune regulator; Z 97.7 1.2E-05 4.3E-10 59.7 1.5 44 61-105 13-57 (66)
53 1xwh_A Autoimmune regulator; P 97.6 1.7E-05 6E-10 58.5 2.2 48 52-105 5-53 (66)
54 1f62_A Transcription factor WS 97.6 1.5E-05 5.1E-10 55.7 1.2 44 62-106 2-49 (51)
55 1wev_A Riken cDNA 1110020M19; 97.5 2.9E-05 1E-09 60.5 2.2 48 61-108 17-73 (88)
56 2l5u_A Chromodomain-helicase-D 97.5 2.2E-05 7.5E-10 57.2 1.3 44 62-106 13-57 (61)
57 1we9_A PHD finger family prote 97.5 5E-05 1.7E-09 55.3 2.5 47 11-59 3-53 (64)
58 1wil_A KIAA1045 protein; ring 97.4 4.5E-05 1.5E-09 59.7 1.7 52 7-60 8-72 (89)
59 2l43_A N-teminal domain from h 97.3 5.8E-05 2E-09 59.0 1.4 42 62-106 27-74 (88)
60 2yt5_A Metal-response element- 97.3 7.2E-05 2.5E-09 54.6 1.8 44 62-105 8-59 (66)
61 3o36_A Transcription intermedi 97.3 0.0001 3.5E-09 63.8 2.6 44 62-106 6-50 (184)
62 3a1b_A DNA (cytosine-5)-methyl 97.3 4.8E-05 1.6E-09 65.8 0.4 51 8-58 73-128 (159)
63 2ku3_A Bromodomain-containing 97.3 5.5E-05 1.9E-09 57.0 0.6 42 62-106 18-65 (71)
64 2ro1_A Transcription intermedi 97.2 0.00014 4.6E-09 63.9 3.1 46 61-107 3-49 (189)
65 3u5n_A E3 ubiquitin-protein li 97.2 0.00011 3.9E-09 64.8 2.5 43 62-105 9-52 (207)
66 1wep_A PHF8; structural genomi 96.9 0.00028 9.6E-09 53.6 1.6 46 12-60 10-59 (79)
67 1wew_A DNA-binding family prot 96.8 0.00058 2E-08 51.8 2.6 46 13-59 15-67 (78)
68 3o70_A PHD finger protein 13; 96.6 0.0011 3.6E-08 49.4 2.9 45 11-60 16-63 (68)
69 2lbm_A Transcriptional regulat 96.6 0.00029 1E-08 59.8 -0.3 45 61-105 64-115 (142)
70 2pv0_B DNA (cytosine-5)-methyl 96.6 0.00032 1.1E-08 68.2 -0.2 52 8-59 87-143 (386)
71 2xb1_A Pygopus homolog 2, B-ce 96.4 0.00092 3.2E-08 53.6 1.3 45 14-59 3-56 (105)
72 1wem_A Death associated transc 96.4 0.00069 2.4E-08 50.9 0.5 44 13-59 15-65 (76)
73 4gne_A Histone-lysine N-methyl 96.3 0.0017 5.9E-08 52.5 2.5 40 62-104 17-59 (107)
74 1wee_A PHD finger family prote 96.2 0.002 6.9E-08 47.9 2.3 44 12-59 14-61 (72)
75 2k16_A Transcription initiatio 96.1 0.0016 5.4E-08 48.6 1.3 48 53-106 16-67 (75)
76 3ql9_A Transcriptional regulat 96.0 0.00095 3.3E-08 55.8 -0.4 43 62-104 59-108 (129)
77 2kgg_A Histone demethylase jar 95.7 0.002 7E-08 45.1 0.4 43 17-61 5-51 (52)
78 3o7a_A PHD finger protein 13 v 95.7 0.0057 2E-07 42.8 2.6 35 22-60 14-48 (52)
79 2vpb_A Hpygo1, pygopus homolog 95.6 0.0026 8.9E-08 46.9 0.5 48 12-60 6-62 (65)
80 2rsd_A E3 SUMO-protein ligase 95.5 0.0064 2.2E-07 44.8 2.3 45 14-59 10-60 (68)
81 3kqi_A GRC5, PHD finger protei 95.0 0.0067 2.3E-07 45.5 1.3 42 15-59 11-56 (75)
82 1wen_A Inhibitor of growth fam 94.2 0.023 7.8E-07 42.5 2.5 38 65-105 20-63 (71)
83 3dac_M MDM4 protein; MDMX, MDM 94.2 0.052 1.8E-06 45.2 4.7 68 216-284 29-107 (130)
84 2vnf_A ING 4, P29ING4, inhibit 94.2 0.011 3.6E-07 42.8 0.5 46 52-106 7-58 (60)
85 4bbq_A Lysine-specific demethy 94.1 0.02 6.9E-07 45.7 2.2 84 16-105 9-112 (117)
86 3kv5_D JMJC domain-containing 93.8 0.0073 2.5E-07 60.2 -1.2 44 14-60 37-84 (488)
87 3fea_A MDM4 protein; HDMX, HDM 93.7 0.048 1.6E-06 43.6 3.5 66 216-282 20-96 (100)
88 2z5s_M MDM4 protein, zebrafish 93.2 0.072 2.5E-06 44.7 4.0 67 216-283 28-105 (140)
89 3lqh_A Histone-lysine N-methyl 92.9 0.021 7.3E-07 50.0 0.4 31 15-47 3-40 (183)
90 1ycq_A MDM2, MDM2; anti-oncoge 92.8 0.18 6.1E-06 40.8 5.6 65 216-281 16-91 (107)
91 1z1m_A Ubiquitin-protein ligas 92.3 0.13 4.6E-06 42.2 4.4 68 216-284 32-110 (119)
92 2lv9_A Histone-lysine N-methyl 92.1 0.11 3.9E-06 40.7 3.6 45 59-105 29-74 (98)
93 1weu_A Inhibitor of growth fam 91.9 0.14 4.7E-06 40.2 3.9 45 52-105 33-83 (91)
94 2axi_A Ubiquitin-protein ligas 91.3 0.16 5.4E-06 41.5 3.6 66 216-282 16-92 (115)
95 1wil_A KIAA1045 protein; ring 91.2 0.023 8E-07 44.4 -1.2 52 62-113 17-82 (89)
96 3c6w_A P28ING5, inhibitor of g 91.1 0.075 2.6E-06 38.2 1.5 45 52-105 6-56 (59)
97 3pur_A Lysine-specific demethy 91.0 0.077 2.6E-06 53.4 1.9 36 23-60 55-90 (528)
98 3a1b_A DNA (cytosine-5)-methyl 90.9 0.026 8.8E-07 48.7 -1.4 81 14-105 36-132 (159)
99 2ri7_A Nucleosome-remodeling f 90.7 0.037 1.3E-06 47.0 -0.6 51 52-108 5-60 (174)
100 2pv0_B DNA (cytosine-5)-methyl 90.0 0.037 1.3E-06 53.8 -1.4 82 13-105 49-146 (386)
101 2g6q_A Inhibitor of growth pro 89.5 0.13 4.6E-06 37.2 1.7 46 52-106 8-59 (62)
102 2jmi_A Protein YNG1, ING1 homo 89.5 0.28 9.5E-06 38.3 3.5 48 52-108 23-77 (90)
103 1we9_A PHD finger family prote 89.0 0.19 6.4E-06 36.0 2.1 49 53-106 4-57 (64)
104 3kv4_A PHD finger protein 8; e 88.7 0.05 1.7E-06 53.7 -1.5 40 19-60 9-52 (447)
105 4bbq_A Lysine-specific demethy 87.0 0.3 1E-05 38.7 2.4 34 25-60 74-110 (117)
106 2lq6_A Bromodomain-containing 83.9 0.31 1.1E-05 37.6 1.0 31 15-45 18-50 (87)
107 2xb1_A Pygopus homolog 2, B-ce 82.9 0.39 1.3E-05 38.2 1.2 45 62-106 5-60 (105)
108 2ku7_A MLL1 PHD3-CYP33 RRM chi 81.5 0.44 1.5E-05 37.5 1.0 33 26-60 2-40 (140)
109 1x4i_A Inhibitor of growth pro 81.0 0.59 2E-05 34.6 1.6 51 52-108 3-56 (70)
110 2kiz_A E3 ubiquitin-protein li 78.2 0.67 2.3E-05 32.6 1.0 42 2-45 2-46 (69)
111 1wep_A PHF8; structural genomi 75.7 0.76 2.6E-05 34.3 0.7 42 65-106 16-62 (79)
112 2d8s_A Cellular modulator of i 75.1 0.94 3.2E-05 34.1 1.1 37 9-45 10-51 (80)
113 3rsn_A SET1/ASH2 histone methy 72.4 2.8 9.4E-05 36.6 3.6 30 15-47 6-39 (177)
114 3o70_A PHD finger protein 13; 71.1 1.6 5.6E-05 31.9 1.6 39 65-105 23-65 (68)
115 1wee_A PHD finger family prote 70.8 1.5 5E-05 32.1 1.3 41 65-106 20-65 (72)
116 2kgg_A Histone demethylase jar 70.3 2 6.7E-05 29.6 1.8 43 62-105 4-52 (52)
117 2vpb_A Hpygo1, pygopus homolog 64.7 0.68 2.3E-05 33.8 -1.7 43 63-105 11-64 (65)
118 1wem_A Death associated transc 64.4 1.4 4.7E-05 32.5 -0.0 42 65-106 20-69 (76)
119 1vfy_A Phosphatidylinositol-3- 62.9 4.8 0.00017 29.5 2.8 57 55-112 7-71 (73)
120 3pur_A Lysine-specific demethy 62.4 5.1 0.00017 40.4 3.6 36 72-107 59-94 (528)
121 2ecl_A Ring-box protein 2; RNF 61.2 1.7 5.8E-05 32.1 -0.0 33 11-45 12-59 (81)
122 1x4j_A Ring finger protein 38; 59.7 2.1 7.1E-05 30.6 0.2 33 11-45 20-55 (75)
123 1iym_A EL5; ring-H2 finger, ub 54.4 4.8 0.00016 26.6 1.4 32 12-45 3-38 (55)
124 3kqi_A GRC5, PHD finger protei 54.0 2.9 0.0001 30.8 0.2 37 71-107 25-61 (75)
125 1vyx_A ORF K3, K3RING; zinc-bi 53.1 1.1 3.7E-05 31.9 -2.3 35 11-45 3-40 (60)
126 1wew_A DNA-binding family prot 52.7 5 0.00017 29.8 1.3 49 52-106 13-71 (78)
127 3iu5_A Protein polybromo-1; PB 49.0 9.3 0.00032 30.1 2.4 44 103-148 9-54 (116)
128 2ect_A Ring finger protein 126 47.1 8.5 0.00029 27.4 1.8 33 11-45 12-47 (78)
129 3kv5_D JMJC domain-containing 46.8 3.9 0.00013 40.6 -0.1 44 65-108 41-89 (488)
130 3dpl_R Ring-box protein 1; ubi 45.8 5.6 0.00019 31.3 0.7 32 12-45 35-84 (106)
131 2rgt_A Fusion of LIM/homeobox 45.8 20 0.00067 29.6 4.1 52 14-69 6-74 (169)
132 2do5_A Splicing factor 3B subu 44.9 23 0.00079 25.0 3.6 40 207-249 6-48 (58)
133 2l0b_A E3 ubiquitin-protein li 44.8 4.1 0.00014 30.5 -0.3 32 12-45 38-72 (91)
134 2yyn_A Transcription intermedi 44.5 8.5 0.00029 31.3 1.6 40 103-149 24-63 (135)
135 2ecm_A Ring finger and CHY zin 44.3 6.2 0.00021 26.0 0.6 32 12-45 3-38 (55)
136 2lq6_A Bromodomain-containing 42.3 8.2 0.00028 29.5 1.1 36 52-90 12-52 (87)
137 3lqh_A Histone-lysine N-methyl 42.0 8.4 0.00029 33.4 1.2 45 61-105 3-61 (183)
138 3mb4_A Protein polybromo-1; PB 41.3 14 0.00047 29.4 2.3 46 102-149 18-65 (124)
139 2ep4_A Ring finger protein 24; 39.8 6.1 0.00021 27.9 -0.0 34 9-45 10-47 (74)
140 2xqn_T Testin, TESS; metal-bin 38.3 13 0.00043 29.1 1.6 86 15-107 4-124 (126)
141 2jtn_A LIM domain-binding prot 38.2 17 0.00056 30.5 2.5 52 14-69 60-128 (182)
142 2dat_A Possible global transcr 37.9 17 0.00059 28.9 2.4 46 102-149 16-63 (123)
143 2ct0_A Non-SMC element 1 homol 37.0 12 0.00041 27.8 1.2 32 12-45 13-45 (74)
144 3k2j_A Protein polybromo-1; PB 36.1 20 0.00067 29.0 2.5 45 103-149 21-67 (130)
145 3pfq_A PKC-B, PKC-beta, protei 36.0 18 0.00063 36.3 2.8 73 14-88 48-147 (674)
146 3mqm_A Probable histone-lysine 35.8 20 0.00067 28.5 2.4 45 103-149 13-59 (126)
147 2lk0_A RNA-binding protein 5; 35.7 16 0.00055 22.8 1.5 23 52-79 2-27 (32)
148 1n0z_A ZNF265; zinc finger, RN 35.3 24 0.00081 23.8 2.4 28 52-79 11-38 (45)
149 3ljw_A Protein polybromo-1; al 34.5 22 0.00074 28.1 2.5 45 103-149 12-58 (120)
150 2k1p_A Zinc finger RAN-binding 34.3 27 0.00093 21.9 2.4 23 52-79 3-28 (33)
151 3g0l_A Hwalp4, bromodomain adj 34.1 17 0.00058 28.5 1.8 41 103-149 17-57 (117)
152 1v87_A Deltex protein 2; ring- 33.3 10 0.00035 29.0 0.3 13 33-45 60-72 (114)
153 2xjy_A Rhombotin-2; oncoprotei 33.1 31 0.0011 26.8 3.2 88 15-109 3-127 (131)
154 3p1f_A CREB-binding protein; s 33.0 18 0.00062 28.4 1.8 42 102-149 14-58 (119)
155 4a0k_B E3 ubiquitin-protein li 32.7 11 0.00036 30.4 0.4 35 11-45 45-95 (117)
156 3q2e_A Bromodomain and WD repe 31.8 19 0.00065 28.6 1.7 41 103-149 14-54 (123)
157 2yqq_A Zinc finger HIT domain- 31.3 17 0.00058 25.9 1.2 26 57-82 9-34 (56)
158 1joc_A EEA1, early endosomal a 31.2 20 0.00067 29.0 1.7 45 62-106 71-121 (125)
159 1dvp_A HRS, hepatocyte growth 31.2 32 0.0011 29.9 3.2 53 54-107 156-216 (220)
160 2yw8_A RUN and FYVE domain-con 31.1 22 0.00075 26.4 1.9 46 62-107 21-72 (82)
161 1chc_A Equine herpes virus-1 r 30.4 15 0.0005 25.3 0.7 32 12-45 3-35 (68)
162 3ng2_A RNF4, snurf, ring finge 30.2 12 0.00041 25.8 0.2 33 11-45 7-46 (71)
163 1zbd_B Rabphilin-3A; G protein 29.5 25 0.00087 28.9 2.1 53 60-113 55-113 (134)
164 3hme_A Bromodomain-containing 28.7 28 0.00096 27.6 2.2 42 102-149 16-57 (123)
165 2zet_C Melanophilin; complex, 28.7 27 0.00092 29.4 2.2 50 60-113 68-123 (153)
166 3t7l_A Zinc finger FYVE domain 28.7 19 0.00066 27.3 1.2 51 61-111 21-77 (90)
167 2d9e_A Peregrin; four-helix bu 28.5 25 0.00086 27.9 1.9 44 100-149 8-51 (121)
168 3nxb_A CAT eye syndrome critic 27.4 26 0.00088 27.4 1.8 44 100-149 17-60 (116)
169 3zyq_A Hepatocyte growth facto 27.0 34 0.0011 30.1 2.6 52 54-106 159-218 (226)
170 1bor_A Transcription factor PM 27.0 66 0.0022 21.5 3.6 32 11-44 3-34 (56)
171 2ea6_A Ring finger protein 4; 26.8 16 0.00054 24.9 0.4 33 11-45 12-51 (69)
172 3mb3_A PH-interacting protein; 26.7 25 0.00085 28.3 1.6 41 103-149 25-65 (135)
173 2jun_A Midline-1; B-BOX, TRIM, 26.0 12 0.00041 28.1 -0.4 27 62-88 5-35 (101)
174 2ebv_A Nuclear pore complex pr 25.8 59 0.002 23.2 3.3 33 45-79 21-53 (57)
175 3d7c_A General control of amin 25.5 29 0.00099 26.9 1.7 42 102-149 10-51 (112)
176 1wfk_A Zinc finger, FYVE domai 25.3 33 0.0011 26.0 2.0 46 62-107 11-63 (88)
177 3gj5_B Nuclear pore complex pr 24.9 39 0.0013 21.6 1.9 27 52-80 4-30 (34)
178 3rcw_A Bromodomain-containing 24.9 38 0.0013 27.2 2.4 45 99-149 13-57 (135)
179 3nw0_A Non-structural maintena 24.7 17 0.00057 32.5 0.2 41 61-104 181-223 (238)
180 2yqp_A Probable ATP-dependent 24.7 39 0.0013 24.4 2.1 23 7-30 12-34 (60)
181 2i7k_A Bromodomain-containing 24.6 30 0.001 27.4 1.6 40 103-149 12-52 (117)
182 2ebr_A Nuclear pore complex pr 24.6 51 0.0018 22.5 2.6 28 50-79 6-33 (47)
183 2xeu_A Ring finger protein 4; 24.3 15 0.00051 24.7 -0.2 31 13-45 2-39 (64)
184 1nj3_A NPL4; NZF domain, rubre 23.8 49 0.0017 20.0 2.2 26 52-79 3-28 (31)
185 1rut_X Flinc4, fusion protein 23.8 19 0.00064 30.3 0.3 52 14-69 5-78 (188)
186 1b8t_A Protein (CRP1); LIM dom 23.2 24 0.00083 29.7 0.9 26 15-44 8-36 (192)
187 3gj3_B Nuclear pore complex pr 23.1 43 0.0015 21.2 1.9 26 52-79 4-29 (33)
188 1x4s_A Protein FON, zinc finge 22.8 19 0.00064 26.0 0.1 24 60-83 11-38 (59)
189 1e6i_A Transcriptional activat 22.6 36 0.0012 26.9 1.8 42 102-149 16-57 (121)
190 3a9j_C Mitogen-activated prote 22.2 53 0.0018 20.3 2.2 26 52-79 5-30 (34)
191 2grc_A Probable global transcr 21.8 44 0.0015 26.7 2.2 44 103-149 15-62 (129)
192 3kv4_A PHD finger protein 8; e 21.7 16 0.00055 35.9 -0.6 37 71-107 20-56 (447)
193 2ffw_A Midline-1; B-BOX, ring 21.7 16 0.00056 27.0 -0.4 27 62-88 32-62 (78)
194 1jm7_B BARD1, BRCA1-associated 21.6 55 0.0019 25.1 2.7 37 62-105 24-62 (117)
195 2d8t_A Dactylidin, ring finger 21.4 30 0.001 24.1 1.0 32 11-45 12-44 (71)
196 3k1l_B Fancl; UBC, ring, RWD, 21.2 50 0.0017 31.9 2.7 34 12-45 306-345 (381)
197 2jne_A Hypothetical protein YF 21.0 19 0.00065 28.6 -0.2 46 62-107 34-90 (101)
198 2d9g_A YY1-associated factor 2 20.9 59 0.002 22.6 2.4 29 52-82 8-36 (53)
199 4afl_A P29ING4, inhibitor of g 20.7 73 0.0025 24.4 3.2 64 216-281 18-96 (104)
200 2dkw_A Hypothetical protein KI 20.2 26 0.00088 28.4 0.4 35 104-149 17-51 (131)
No 1
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.93 E-value=1.2e-26 Score=187.63 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=75.1
Q ss_pred cccccccchhhhH-HHHHHHHHHhhhh----hhhhhhHHHHHHHHhhhcccCCcCCCCeeecchhhHHHHHH----Hhhh
Q 045234 203 KSSRSYYMRVRWY-LEMQKMLKLHART----LQEQNNKNTMVACRNHTQEALVKAMQLHVTCHWNMWNLYLR----NHHL 273 (299)
Q Consensus 203 k~~~~~~~~~gw~-~eL~~fl~~~g~~----lsr~~~v~k~lw~YIk~n~LqdP~~Kr~I~CD~kL~~lF~~----~f~m 273 (299)
.+++.+| +||+ ++|++||++||.+ ++|+ +|++.||+|||+||||||.|||.|+||++|+.|||+ +|+|
T Consensus 6 ~~~~~~~--~~w~S~eLa~fl~~iG~~~~~~~sR~-eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m 82 (101)
T 1v32_A 6 SGKRFEF--VGWGSRQLIEFLHSLGKDTSEMISRY-DVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKV 82 (101)
T ss_dssp CSSCCSS--SSSSCHHHHHHHHHHTCCCSSCCCHH-HHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHH
T ss_pred CCCccee--cccCCHHHHHHHHHcCCCCccccCHH-HHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHH
Confidence 4578899 9999 9999999999973 9999 999999999999999999999999999999999997 9999
Q ss_pred HHHHhcccCCCC
Q 045234 274 QGLLNTMEFLPT 285 (299)
Q Consensus 274 ~klL~~H~~~p~ 285 (299)
+++|++|+..+.
T Consensus 83 ~klL~~Hl~~~~ 94 (101)
T 1v32_A 83 YDLLEKHYKENQ 94 (101)
T ss_dssp HHHHHHHSCSCC
T ss_pred HHHHHHHcCccc
Confidence 999999998654
No 2
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.88 E-value=9.6e-24 Score=172.28 Aligned_cols=96 Identities=32% Similarity=0.793 Sum_probs=81.1
Q ss_pred ccccccccccccccccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccCCccccccCCceeccccCCCCC
Q 045234 2 ARSKRLKKEEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWHFCGVCRKASKFYCFCCPSAV 81 (299)
Q Consensus 2 ~~~~krk~~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H~C~~C~~~~~~~C~~Cp~s~ 81 (299)
+|+.+.+.+..++++|++|++||+||+||.++||++||..||++... |.|.|+||+|.|.+|++++.++|..||+||
T Consensus 3 ~r~~~~~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~~~---P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~sf 79 (107)
T 4gne_A 3 ARKIKTEPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQP---PYGKWECPWHQCDECSSAAVSFCEFCPHSF 79 (107)
T ss_dssp -------CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCSSC---CSSCCCCGGGBCTTTCSBCCEECSSSSCEE
T ss_pred cccccCCCcCCCCCCCCcCCCCCcEeEECCCCCCcccccccCcCCcC---CCCCEECCCCCCCcCCCCCCcCcCCCCcch
Confidence 45566667789999999999999999999778999999999997665 899999999999999999999999999999
Q ss_pred CCcccCccccccccCCcccc
Q 045234 82 CKTCLYDIQFALVKENKGFC 101 (299)
Q Consensus 82 c~~CL~~~~~~~v~~~~~~C 101 (299)
|..|++++++... .+.|+|
T Consensus 80 C~~c~~g~l~~~~-~~~~~c 98 (107)
T 4gne_A 80 CKDHEKGALVPSA-LEGRLC 98 (107)
T ss_dssp CTTTCTTSCEECT-TTTCEE
T ss_pred hhhccCCcceecC-CCCcee
Confidence 9999999988774 455554
No 3
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.81 E-value=7.4e-21 Score=151.38 Aligned_cols=66 Identities=5% Similarity=-0.043 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhhh-hhhhhhHHHHHHHHhhhcccCCcCCCCeeecchhhHHHHHH----HhhhHHHHhcccCCCC
Q 045234 216 LEMQKMLKLHART-LQEQNNKNTMVACRNHTQEALVKAMQLHVTCHWNMWNLYLR----NHHLQGLLNTMEFLPT 285 (299)
Q Consensus 216 ~eL~~fl~~~g~~-lsr~~~v~k~lw~YIk~n~LqdP~~Kr~I~CD~kL~~lF~~----~f~m~klL~~H~~~p~ 285 (299)
++|++||+ .+ ++|+ +|++.||+|||+||||||.+|+.|+||++|+.|||+ +|+|+++|++|+..|.
T Consensus 16 ~~La~~lG---~~~~sr~-evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1v31_A 16 TALMDVLG---IEVETRP-RIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPP 86 (93)
T ss_dssp HHHHHHSC---CSEECSH-HHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBCCC
T ss_pred HHHHHHHC---CCccCHH-HHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 89999984 44 9999 999999999999999999999999999999999998 9999999999997654
No 4
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.80 E-value=8.2e-21 Score=151.20 Aligned_cols=66 Identities=9% Similarity=0.039 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhh-hhhhhhHHHHHHHHhhhcccCCcCCCCeeecchhhHHHHHH----HhhhHHHHhcccCCCC
Q 045234 216 LEMQKMLKLHART-LQEQNNKNTMVACRNHTQEALVKAMQLHVTCHWNMWNLYLR----NHHLQGLLNTMEFLPT 285 (299)
Q Consensus 216 ~eL~~fl~~~g~~-lsr~~~v~k~lw~YIk~n~LqdP~~Kr~I~CD~kL~~lF~~----~f~m~klL~~H~~~p~ 285 (299)
++|++||| .+ ++|+ +|++.||+|||+||||||.+|+.|+||++|+.|||+ +|+|+++|++|+.-|.
T Consensus 16 ~~La~~lG---~~~~sr~-evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1uhr_A 16 PRLARLLG---IHTQTRP-VIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPE 86 (93)
T ss_dssp TTHHHHTC---CSEEEHH-HHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSS
T ss_pred HHHHHHHC---CCccCHH-HHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 78999984 44 9999 999999999999999999999999999999999997 9999999999987654
No 5
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.69 E-value=9.7e-18 Score=135.84 Aligned_cols=91 Identities=25% Similarity=0.552 Sum_probs=79.0
Q ss_pred cccccccceeccCCce---eeeCCCCCCCcccccccCCCccccCCCCCeeccCC-ccccccCCc----eeccccCCCCCC
Q 045234 11 EISEIWCFKCKHGGEL---RLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWH-FCGVCRKAS----KFYCFCCPSAVC 82 (299)
Q Consensus 11 ~~~ed~C~vC~dGGeL---v~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H-~C~~C~~~~----~~~C~~Cp~s~c 82 (299)
..++++|.+|+++|++ |.|+ .||++||+.||++.... .+.+.|+||.+ .|.+|++.. ++.|+.|+.+||
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~--~C~~~~H~~Cl~~~~~~-~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH 80 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCT--TCGQHYHGMCLDIAVTP-LKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYH 80 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECS--SSCCEECTTTTTCCCCT-TTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEE
T ss_pred CCCCCCCcCCCCCCCCcCCeECC--CCCCCcChHHhCCcccc-ccccCccCCcCCcccccCccCCCCCeeECCCCCcHHh
Confidence 4689999999999987 9999 99999999999987542 25789999998 699999874 789999999999
Q ss_pred CcccCccccccccCCcccccccH
Q 045234 83 KTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 83 ~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
..|+.++.. .++.+.|+|+.|.
T Consensus 81 ~~Cl~ppl~-~~P~g~W~C~~C~ 102 (111)
T 2ysm_A 81 TFCLQPVMK-SVPTNGWKCKNCR 102 (111)
T ss_dssp GGGSSSCCS-SCCSSCCCCHHHH
T ss_pred HHhcCCccc-cCCCCCcCCcCCc
Confidence 999997654 4577899999885
No 6
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.60 E-value=1.6e-16 Score=130.01 Aligned_cols=93 Identities=26% Similarity=0.458 Sum_probs=76.3
Q ss_pred ccccceeccC----------CceeeeCCCCCCCcccccccCCCcc--ccCCCCCeeccCC-ccccccCC----ceecccc
Q 045234 14 EIWCFKCKHG----------GELRLCDNTRCLKVYHPECVDKDES--FLAAKTKWICNWH-FCGVCRKA----SKFYCFC 76 (299)
Q Consensus 14 ed~C~vC~dG----------GeLv~CD~~~CPkaYH~~Cl~~~~~--~~~~~g~W~Cp~H-~C~~C~~~----~~~~C~~ 76 (299)
+++|.+|.+| |+||.|+ .||++||+.||++... ...+.+.|+||.+ .|.+|+.. .++.|+.
T Consensus 1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~ 78 (114)
T 2kwj_A 1 GSYCDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDD 78 (114)
T ss_dssp CCCCSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSS
T ss_pred CCcCccCCCCccccccCCCCCCCeEeC--CCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCC
Confidence 3678889764 4999999 9999999999997521 0126789999998 79999974 5789999
Q ss_pred CCCCCCCcccCccccccccCCcccccccHHHHH
Q 045234 77 CPSAVCKTCLYDIQFALVKENKGFCNSCLELAW 109 (299)
Q Consensus 77 Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~l~~ 109 (299)
|+.+||..|+.+++. .++.+.|||+.|.....
T Consensus 79 C~~~yH~~Cl~ppl~-~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 79 CDRGYHMYCLNPPVA-EPPEGSWSCHLCWELLK 110 (114)
T ss_dssp SCCEEETTTSSSCCS-SCCSSCCCCHHHHHHHH
T ss_pred CCccccccccCCCcc-CCCCCCeECccccchhh
Confidence 999999999997644 46888999999976554
No 7
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.55 E-value=1.5e-15 Score=123.80 Aligned_cols=91 Identities=21% Similarity=0.447 Sum_probs=74.5
Q ss_pred ccccccceecc---------CCceeeeCCCCCCCcccccccCCCcc--ccCCCCCeeccCC-ccccccCC-----ceecc
Q 045234 12 ISEIWCFKCKH---------GGELRLCDNTRCLKVYHPECVDKDES--FLAAKTKWICNWH-FCGVCRKA-----SKFYC 74 (299)
Q Consensus 12 ~~ed~C~vC~d---------GGeLv~CD~~~CPkaYH~~Cl~~~~~--~~~~~g~W~Cp~H-~C~~C~~~-----~~~~C 74 (299)
...++|.+|.. +|+||.|+ +|+++||+.||++... ...+.+.|+||.+ .|.+|+.. .++.|
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~C 80 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFC 80 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEEC
T ss_pred ccCccccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEc
Confidence 35678999953 46999999 9999999999986311 1126789999999 89999975 47899
Q ss_pred ccCCCCCCCcccCccccccccCCcccccccH
Q 045234 75 FCCPSAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 75 ~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
+.|+.+||..|+.+++.. ++.+.|+|+.|.
T Consensus 81 d~C~~~yH~~Cl~p~l~~-~P~~~W~C~~C~ 110 (112)
T 3v43_A 81 DSCDRGFHMECCDPPLTR-MPKGMWICQICR 110 (112)
T ss_dssp TTTCCEECGGGCSSCCSS-CCSSCCCCTTTS
T ss_pred CCCCCeeecccCCCCCCC-CCCCCeECCCCC
Confidence 999999999999977554 578899999985
No 8
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.44 E-value=5.9e-14 Score=124.85 Aligned_cols=117 Identities=23% Similarity=0.497 Sum_probs=76.7
Q ss_pred cccccccccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccCCccccccCCc-eeccccCCCCCCCcccC
Q 045234 9 KEEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWHFCGVCRKAS-KFYCFCCPSAVCKTCLY 87 (299)
Q Consensus 9 ~~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H~C~~C~~~~-~~~C~~Cp~s~c~~CL~ 87 (299)
+++.++++|.+|++||+|++|| +||++||..|++|+.. ..|.|.|+||. |..-+... .+.|..+..+.-.
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~l~-~~p~~~W~C~~--C~~~~~~~~~~~c~~~~~s~k~---- 72 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCE--KCPKVFHLTCHVPTLL-SFPSGDWICTF--CRDIGKPEVEYDCDNLQHSKKG---- 72 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECS--SSSCEECTTTSSSCCS-SCCSSCCCCTT--TSCSSSCSSCCSCC------------
T ss_pred CCCCCCCCCCCCCCCCceEEcC--CCCCccCCccCCCCCC-CCCCCCEEeCc--eeCccccccccccccccchhhh----
Confidence 3567899999999999999999 9999999999987543 24899999993 44443332 3445444322110
Q ss_pred ccccccccCCcccc----cccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCC
Q 045234 88 DIQFALVKENKGFC----NSCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESL 148 (299)
Q Consensus 88 ~~~~~~v~~~~~~C----~~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~l 148 (299)
....++- ..|.++...|.+..... .|.. ++..-+.+||++||.+|+|
T Consensus 73 -------~~~~~ls~~~~~~c~~il~~l~~~~~s~----~F~~---Pv~~~~pdY~~iIk~PmdL 123 (207)
T 3u5n_A 73 -------KTAQGLSPVDQRKCERLLLYLYCHELSI----EFQE---PVPASIPNYYKIIKKPMDL 123 (207)
T ss_dssp ---------CCSSCHHHHHHHHHHHHHHHTSTTCG----GGSS---CCCTTSTTHHHHCSSCCCH
T ss_pred -------hhhhcccHHHHHHHHHHHHHHHhccchh----hhhc---cCChhhccHhHHhCCccCH
Confidence 0111121 25888887777654332 5766 3334578999999999977
No 9
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.40 E-value=1.5e-13 Score=119.86 Aligned_cols=118 Identities=24% Similarity=0.467 Sum_probs=76.1
Q ss_pred ccccccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccCCccccccCCc-eeccccCCCCCCCcccCccc
Q 045234 12 ISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWHFCGVCRKAS-KFYCFCCPSAVCKTCLYDIQ 90 (299)
Q Consensus 12 ~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~ 90 (299)
.++++|.+|++||+|++|| +||++||..|+++... ..|.|.|+||. |..-.... .+.|..+..+--. ...
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd--~C~~~~H~~C~~p~l~-~~p~~~W~C~~--C~~~~~~~~e~dc~~~~~~s~~---~~~- 72 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCE--KCPKVFHLSCHVPTLT-NFPSGEWICTF--CRDLSKPEVEYDCDAPSHNSEK---KKT- 72 (184)
T ss_dssp CSCSSCTTTCCCSSCEECS--SSSCEECTTTSSSCCS-SCCSSCCCCTT--TSCSSSCSSCCGGGCCSSCTTT---SCC-
T ss_pred CCCCccccCCCCCeeeecC--CCCcccCccccCCCCC-CCCCCCEECcc--ccCccccccccccccccccccc---ccc-
Confidence 5789999999999999999 9999999999987543 23889999994 33333222 3555543221000 000
Q ss_pred cccccCCcccc----cccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 91 FALVKENKGFC----NSCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 91 ~~~v~~~~~~C----~~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
.+...+- ..|.++...|.+..... .|.+ ++...+.+||++|+.+|+|+
T Consensus 73 ----~~~~~l~~~~~~~c~~il~~l~~~~~s~----~F~~---Pv~~~~pdY~~iIk~PmdL~ 124 (184)
T 3o36_A 73 ----EGLVKLTPIDKRKCERLLLFLYCHEMSL----AFQD---PVPLTVPDYYKIIKNPMDLS 124 (184)
T ss_dssp ----TTCCCCCHHHHHHHHHHHHHHHHSTTCH----HHHS---CCCTTSTTHHHHCSSCCCHH
T ss_pred ----ccccccCHHHHHHHHHHHHHHHhchhhh----hhcc---ccccCCCchhhhcCCCCCHH
Confidence 0111122 25777877777654332 5766 33334689999999999763
No 10
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.22 E-value=5.5e-12 Score=92.64 Aligned_cols=50 Identities=30% Similarity=0.714 Sum_probs=43.1
Q ss_pred cccccccccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccCC
Q 045234 9 KEEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWH 61 (299)
Q Consensus 9 ~~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H 61 (299)
.++.++++|.+|+++|+||+|| .|+++||..|+++... ..|.+.|+||.+
T Consensus 4 ~~d~~~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~ppl~-~~p~g~W~C~~C 53 (61)
T 1mm2_A 4 GSDHHMEFCRVCKDGGELLCCD--TCPSSYHIHCLNPPLP-EIPNGEWLCPRC 53 (61)
T ss_dssp CSCSSCSSCTTTCCCSSCBCCS--SSCCCBCSSSSSSCCS-SCCSSCCCCTTT
T ss_pred cccCCCCcCCCCCCCCCEEEcC--CCCHHHcccccCCCcC-cCCCCccCChhh
Confidence 4567899999999999999999 9999999999997533 238899999964
No 11
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.17 E-value=1.5e-11 Score=97.10 Aligned_cols=49 Identities=22% Similarity=0.567 Sum_probs=42.6
Q ss_pred cccccccccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 9 KEEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 9 ~~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
....++++|.+|++||+||+|| .||++||..|+.|... ..|.|.|+||.
T Consensus 20 ~~d~n~~~C~vC~~~g~LL~CD--~C~~~fH~~Cl~PpL~-~~P~g~W~C~~ 68 (88)
T 1fp0_A 20 TLDDSATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQ-DVPGEEWSCSL 68 (88)
T ss_dssp SSSSSSSCCSSSCSSSCCEECT--TSSCEECTTSSSTTCC-CCCSSSCCCCS
T ss_pred ccCCCCCcCcCcCCCCCEEECC--CCCCceecccCCCCCC-CCcCCCcCCcc
Confidence 4567899999999999999999 9999999999987543 24899999994
No 12
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.16 E-value=1.4e-11 Score=91.64 Aligned_cols=48 Identities=29% Similarity=0.675 Sum_probs=41.4
Q ss_pred ccccccccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 10 EEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 10 ~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
...++++|.+|+++|+||+|| .|+++||..|++++.. ..|.+.|+||.
T Consensus 4 ~~~~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~ppl~-~~P~g~W~C~~ 51 (66)
T 1xwh_A 4 AQKNEDECAVCRDGGELICCD--GCPRAFHLACLSPPLR-EIPSGTWRCSS 51 (66)
T ss_dssp CCSCCCSBSSSSCCSSCEECS--SCCCEECTTTSSSCCS-SCCSSCCCCHH
T ss_pred CCCCCCCCccCCCCCCEEEcC--CCChhhcccccCCCcC-cCCCCCeECcc
Confidence 357899999999999999999 9999999999997543 23889999983
No 13
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=1.3e-11 Score=90.64 Aligned_cols=48 Identities=40% Similarity=0.879 Sum_probs=42.0
Q ss_pred ccccccccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 10 EEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 10 ~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
+..++++|.+|+++|+||+|| .|+++||..|+++... ..|.+.|+||.
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~p~l~-~~p~g~W~C~~ 54 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCD--TCPRAYHMVCLDPDME-KAPEGKWSCPH 54 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECS--SSSCEEEHHHHCTTCC-SCCCSSCCCTT
T ss_pred cCCCCCCCccCCCCCcEEECC--CCChhhhhhccCCCCC-CCCCCceECcc
Confidence 467889999999999999999 9999999999998533 23899999984
No 14
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.11 E-value=2.4e-11 Score=88.60 Aligned_cols=47 Identities=38% Similarity=0.894 Sum_probs=41.0
Q ss_pred cccccccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 11 EISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 11 ~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
+.++++|.+|+++|+||+|| .|+++||..|++++.. ..|.+.|+||.
T Consensus 2 d~~~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~ppl~-~~p~g~W~C~~ 48 (60)
T 2puy_A 2 MIHEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLK-TIPKGMWICPR 48 (60)
T ss_dssp CCCCSSCTTTCCCSSCEECS--SSSCEECGGGSSSCCS-SCCCSCCCCHH
T ss_pred CCCCCCCcCCCCCCcEEEcC--CCCcCEECCcCCCCcC-CCCCCceEChh
Confidence 46789999999999999999 9999999999997543 23889999984
No 15
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=3.2e-11 Score=86.86 Aligned_cols=48 Identities=35% Similarity=0.833 Sum_probs=41.5
Q ss_pred ccccccccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 10 EEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 10 ~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
...++++|.+|+++|+||+|| .|+++||..|++++.. ..|.+.|+||.
T Consensus 5 ~~~~~~~C~vC~~~g~ll~Cd--~C~~~~H~~Cl~ppl~-~~p~g~W~C~~ 52 (56)
T 2yql_A 5 SSGHEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLK-TIPKGMWICPR 52 (56)
T ss_dssp CCSSCCSCSSSCCSSCCEECS--SSSCEECSSSSSSCCC-SCCCSSCCCHH
T ss_pred cCCCCCCCccCCCCCeEEEcC--CCCcceECccCCCCcC-CCCCCceEChh
Confidence 357889999999999999999 9999999999997543 23889999984
No 16
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.06 E-value=5.1e-11 Score=89.08 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=41.5
Q ss_pred cccccccccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 9 KEEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 9 ~~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
+...+...|.+|+++|+||+|| .|+++||..|+.+... ..|.+.|+|+.
T Consensus 7 ~~~~~~~~C~vC~~~~~ll~Cd--~C~~~~H~~Cl~P~l~-~~P~g~W~C~~ 55 (66)
T 2lri_C 7 QNLAPGARCGVCGDGTDVLRCT--HCAAAFHWRCHFPAGT-SRPGTGLRCRS 55 (66)
T ss_dssp TCCCTTCCCTTTSCCTTCEECS--SSCCEECHHHHCTTTC-CCCSSSCCCTT
T ss_pred cCCCCCCCcCCCCCCCeEEECC--CCCCceecccCCCccC-cCCCCCEECcc
Confidence 3455677899999999999999 9999999999997543 24899999984
No 17
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=99.05 E-value=3.5e-11 Score=102.48 Aligned_cols=52 Identities=21% Similarity=0.583 Sum_probs=43.8
Q ss_pred cccccccccccceeccCCceeeeCCCCCCCcccccccCCCccc-----c-CCCCCeeccC
Q 045234 7 LKKEEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESF-----L-AAKTKWICNW 60 (299)
Q Consensus 7 rk~~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~-----~-~~~g~W~Cp~ 60 (299)
.+.++.++++|.+|++||+|++|| .||++||..||.++... + .|.+.|.||.
T Consensus 56 ~~d~Dg~~d~C~vC~~GG~LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~ 113 (142)
T 2lbm_A 56 SRDSDGMDEQCRWCAEGGNLICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYI 113 (142)
T ss_dssp CBCTTSCBCSCSSSCCCSSEEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTT
T ss_pred eecCCCCCCeecccCCCCcEEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeec
Confidence 346688999999999999999999 99999999999965320 1 3889999984
No 18
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.95 E-value=1.4e-10 Score=91.15 Aligned_cols=44 Identities=25% Similarity=0.622 Sum_probs=39.9
Q ss_pred ccccccceeccCC-----ceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 12 ISEIWCFKCKHGG-----ELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 12 ~~ed~C~vC~dGG-----eLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
.++++|.+|++|| +||+|| .|+++||..|+++... |.|.|+||.
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~v---P~g~W~C~~ 71 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYI---PEGQWLCRH 71 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSSC---CSSCCCCHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCcc---CCCceECcc
Confidence 5678999999988 999999 9999999999999754 899999984
No 19
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.92 E-value=4e-10 Score=99.32 Aligned_cols=47 Identities=23% Similarity=0.608 Sum_probs=40.2
Q ss_pred cccccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccCCc
Q 045234 13 SEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWHF 62 (299)
Q Consensus 13 ~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H~ 62 (299)
++++|.+|++||+|++|| +||++||..|+.+... ..|.|.|+||.|.
T Consensus 1 s~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~l~-~~p~g~W~C~~C~ 47 (189)
T 2ro1_A 1 SATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQ-DVPGEEWSCSLCH 47 (189)
T ss_dssp CCCCBTTTCCCSSCCCCT--TTCCBCCSTTSTTCCS-SCCCTTCCTTTTS
T ss_pred CCCcCccCCCCCceeECC--CCCchhccccCCCCcc-cCCCCCCCCcCcc
Confidence 478999999999999999 9999999999986533 2389999999643
No 20
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.92 E-value=2e-10 Score=96.43 Aligned_cols=52 Identities=21% Similarity=0.616 Sum_probs=43.6
Q ss_pred cccccccccccceeccCCceeeeCCCCCCCcccccccCCCc------cccCCCCCeeccC
Q 045234 7 LKKEEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDE------SFLAAKTKWICNW 60 (299)
Q Consensus 7 rk~~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~------~~~~~~g~W~Cp~ 60 (299)
.++++.++++|.+|++||+|++|| .||++||..|+.+.. ....+.+.|.|+.
T Consensus 50 ~~d~Dg~~~~C~vC~dGG~LlcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~ 107 (129)
T 3ql9_A 50 SRDSDGMDEQCRWCAEGGNLICCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYI 107 (129)
T ss_dssp CBCTTSCBSSCTTTCCCSEEEECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTT
T ss_pred ccCCCCCCCcCeecCCCCeeEecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCC
Confidence 356788999999999999999999 999999999999642 1113789999985
No 21
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.90 E-value=3.5e-10 Score=85.70 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=40.7
Q ss_pred ccccccccceeccCC-----ceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 10 EEISEIWCFKCKHGG-----ELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 10 ~~~~ed~C~vC~dGG-----eLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
...++++|.+|++|| +||+|| .|+++||..|+++... |+|.|+||.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~~v---P~g~W~C~~ 62 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYI---PEGQWLCRH 62 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCSSC---CSSCCCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCCcC---CCCCcCCcc
Confidence 356789999999886 999999 9999999999999754 899999984
No 22
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=3.4e-10 Score=89.49 Aligned_cols=58 Identities=26% Similarity=0.545 Sum_probs=45.7
Q ss_pred ccccccccccceeccCCc---eeeeCCCCCCCcccccccCCCccccCCCCCeeccCCccccccC
Q 045234 8 KKEEISEIWCFKCKHGGE---LRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWHFCGVCRK 68 (299)
Q Consensus 8 k~~~~~ed~C~vC~dGGe---Lv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H~C~~C~~ 68 (299)
..+..+++.|.||+.+|+ ||+|| .|+++||..||+|+.. ..|.+.|+||.+.-..|++
T Consensus 10 ~~~~~~~~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~-~~P~g~W~C~~C~~~~~~~ 70 (92)
T 2e6r_A 10 SAQFIDSYICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLP-EIPRGIWRCPKCILAECKQ 70 (92)
T ss_dssp CCCCCCCCCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCS-SCCSSCCCCHHHHHHHHSC
T ss_pred hhhccCCCCCccCCCcCCCCCEEEcC--CCCchhccccCCCCcc-cCCCCCcCCccCcCccccC
Confidence 345677889999999874 99999 9999999999997543 2488999999655444544
No 23
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.79 E-value=1.2e-09 Score=80.51 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=40.4
Q ss_pred cccccccceeccC-----CceeeeCCCCCCCcccccccCCCccc--cCCCCCeeccC
Q 045234 11 EISEIWCFKCKHG-----GELRLCDNTRCLKVYHPECVDKDESF--LAAKTKWICNW 60 (299)
Q Consensus 11 ~~~ed~C~vC~dG-----GeLv~CD~~~CPkaYH~~Cl~~~~~~--~~~~g~W~Cp~ 60 (299)
..++++|.+|+.+ |+||+|| .|+++||..|+++.... +.|.+.|+|+.
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~ 57 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQ 57 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCCcccccccCCCCCEECCC
Confidence 4678899999988 9999999 99999999999985421 12789999984
No 24
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.78 E-value=1.8e-09 Score=75.89 Aligned_cols=42 Identities=31% Similarity=0.716 Sum_probs=35.0
Q ss_pred ccceeccCC---ceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 16 WCFKCKHGG---ELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 16 ~C~vC~dGG---eLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
.|.+|+++| +||.|| .|+++||..|+++... ..|.+.|+||.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~-~~P~g~W~C~~ 46 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALY-EVPDGEWQCPA 46 (51)
T ss_dssp CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCC-SCCSSCCSCTT
T ss_pred CCCCCCCCCCCCCEEECC--CCChhhCcccCCCCcC-CCCCCcEECcC
Confidence 589999765 799999 9999999999986533 23889999985
No 25
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=8.6e-09 Score=79.13 Aligned_cols=45 Identities=24% Similarity=0.525 Sum_probs=38.1
Q ss_pred cccccceec---cCCceeeeCCCCCCCcccccccCCCccccCCCC-CeeccC
Q 045234 13 SEIWCFKCK---HGGELRLCDNTRCLKVYHPECVDKDESFLAAKT-KWICNW 60 (299)
Q Consensus 13 ~ed~C~vC~---dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g-~W~Cp~ 60 (299)
.+..|.+|+ ++|+||+|| .|+++||..||+|+... .|.| .|+||.
T Consensus 25 ~~c~C~vC~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~-~P~g~~W~C~~ 73 (77)
T 2e6s_A 25 HSCSCRVCGGKHEPNMQLLCD--ECNVAYHIYCLNPPLDK-VPEEEYWYCPS 73 (77)
T ss_dssp SSSSCSSSCCCCCSTTEEECS--SSCCEEETTSSSSCCSS-CCCSSCCCCTT
T ss_pred CCCCCcCcCCcCCCCCEEEcC--CCCccccccccCCCccC-CCCCCCcCCcC
Confidence 456899999 689999999 99999999999975432 3788 999995
No 26
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.70 E-value=2.6e-09 Score=83.72 Aligned_cols=47 Identities=21% Similarity=0.596 Sum_probs=39.2
Q ss_pred ccccccceeccC-----CceeeeCCCCCCCcccccccCCCccc---cCCCCCeeccC
Q 045234 12 ISEIWCFKCKHG-----GELRLCDNTRCLKVYHPECVDKDESF---LAAKTKWICNW 60 (299)
Q Consensus 12 ~~ed~C~vC~dG-----GeLv~CD~~~CPkaYH~~Cl~~~~~~---~~~~g~W~Cp~ 60 (299)
+++++|.+|+.+ ++||+|| .|+++||..|+++.... ..|.+.|+|+.
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~ 68 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCAR 68 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCcccccccCCCCCCeeCcc
Confidence 456799999987 7999999 99999999999986431 13899999984
No 27
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.65 E-value=9.8e-09 Score=77.31 Aligned_cols=42 Identities=26% Similarity=0.623 Sum_probs=35.2
Q ss_pred ccceec---cCCceeeeCCCCCCCcccccccCCCccccCCCC-CeeccC
Q 045234 16 WCFKCK---HGGELRLCDNTRCLKVYHPECVDKDESFLAAKT-KWICNW 60 (299)
Q Consensus 16 ~C~vC~---dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g-~W~Cp~ 60 (299)
.|.+|+ ++|+||+|| .|+++||..||+++... .|.| .|+||.
T Consensus 20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~-~P~g~~W~C~~ 65 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSS-VPSEDEWYCPE 65 (70)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEEGGGSSSCCSS-CCSSSCCCCTT
T ss_pred CCcCCCCcCCCCCEEEcC--CCCCceecccCCCCcCC-CCCCCCcCCcC
Confidence 566888 689999999 99999999999975432 3788 999995
No 28
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.48 E-value=6.4e-08 Score=73.11 Aligned_cols=45 Identities=31% Similarity=0.760 Sum_probs=36.9
Q ss_pred ccccccceecc--CCceeeeCCCCCC-CcccccccCCCccccCCCCCeeccC
Q 045234 12 ISEIWCFKCKH--GGELRLCDNTRCL-KVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 12 ~~ed~C~vC~d--GGeLv~CD~~~CP-kaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
.+..+| +|+. .|++|.||...|+ ..||..||++... |.+.|+||.
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~---p~g~w~Cp~ 61 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTK---PRGKWFCPR 61 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSC---CSSCCCCTT
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcC---CCCCEECCC
Confidence 446789 6998 7999999932399 6999999998765 789999994
No 29
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.46 E-value=4.8e-08 Score=71.27 Aligned_cols=45 Identities=36% Similarity=0.796 Sum_probs=36.5
Q ss_pred ccccccceecc--CCceeeeCCCCCC-CcccccccCCCccccCCCCCeeccC
Q 045234 12 ISEIWCFKCKH--GGELRLCDNTRCL-KVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 12 ~~ed~C~vC~d--GGeLv~CD~~~CP-kaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
.+..+| +|++ +|++|.||...|| ..||..||+++.. |.+.|+||.
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~---p~~~w~Cp~ 54 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTK---PKGKWFCPR 54 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSC---CSSCCCCHH
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcccC---CCCCEECcC
Confidence 455678 7998 7999999933399 5999999998876 779999983
No 30
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.41 E-value=7.2e-08 Score=70.45 Aligned_cols=45 Identities=31% Similarity=0.760 Sum_probs=36.2
Q ss_pred ccccccceecc--CCceeeeCCCCCC-CcccccccCCCccccCCCCCeeccC
Q 045234 12 ISEIWCFKCKH--GGELRLCDNTRCL-KVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 12 ~~ed~C~vC~d--GGeLv~CD~~~CP-kaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
.+..+| +|+. +|++|.||.-.|| ..||..||++... |.+.|+||.
T Consensus 8 ~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~---p~g~w~C~~ 55 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTK---PRGKWFCPR 55 (60)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSC---CSSCCCCHH
T ss_pred CCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCcC---CCCCEECcC
Confidence 345678 7987 7999999932399 7999999998766 789999983
No 31
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.40 E-value=7.7e-08 Score=70.88 Aligned_cols=45 Identities=33% Similarity=0.734 Sum_probs=36.7
Q ss_pred ccccccceecc--CCceeeeCCCCCC-CcccccccCCCccccCCCCCeeccC
Q 045234 12 ISEIWCFKCKH--GGELRLCDNTRCL-KVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 12 ~~ed~C~vC~d--GGeLv~CD~~~CP-kaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
.+..+| +|++ +|++|.||.-.|| ..||..||++... |.+.|+||.
T Consensus 9 ~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~~---p~~~w~Cp~ 56 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYK---PKGKWYCPK 56 (62)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSC---CSSCCCCHH
T ss_pred CCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcCcC---CCCCEECcC
Confidence 345678 7998 7999999933399 8999999999865 789999983
No 32
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.40 E-value=1.3e-07 Score=76.70 Aligned_cols=42 Identities=31% Similarity=0.778 Sum_probs=35.3
Q ss_pred ccceeccC----CceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 16 WCFKCKHG----GELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 16 ~C~vC~dG----GeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
+|.+|+++ ++|++|| .|+++||..|+.+... ..|++.|+||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd--~C~~~yH~~Cl~p~l~-~~P~~~W~C~~ 108 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCD--SCDRGFHMECCDPPLT-RMPKGMWICQI 108 (112)
T ss_dssp CBTTTCCCCCTTCCCEECT--TTCCEECGGGCSSCCS-SCCSSCCCCTT
T ss_pred ccccccCcCCCccceEEcC--CCCCeeecccCCCCCC-CCCCCCeECCC
Confidence 68888875 4899999 9999999999987543 24899999985
No 33
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.39 E-value=9.7e-08 Score=76.85 Aligned_cols=48 Identities=33% Similarity=0.834 Sum_probs=39.7
Q ss_pred ccceeccCCc---eeeeCCCCCCCcccccccCCCccccCCCCCeeccCCccccccC
Q 045234 16 WCFKCKHGGE---LRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWHFCGVCRK 68 (299)
Q Consensus 16 ~C~vC~dGGe---Lv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H~C~~C~~ 68 (299)
+|.+|+.+|+ |+.|| .|+++||..|+.+... ..|.+.|+|| .|..|..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~-~~P~g~W~C~--~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCD--TCDKGYHTFCLQPVMK-SVPTNGWKCK--NCRICIS 106 (111)
T ss_dssp CCTTTCCCSCCTTEEECS--SSCCEEEGGGSSSCCS-SCCSSCCCCH--HHHCCSC
T ss_pred cccccCccCCCCCeeECC--CCCcHHhHHhcCCccc-cCCCCCcCCc--CCcCcCC
Confidence 6889998886 99999 9999999999997543 2388999999 6766654
No 34
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.39 E-value=1.5e-07 Score=74.47 Aligned_cols=45 Identities=31% Similarity=0.760 Sum_probs=36.9
Q ss_pred ccccccceecc--CCceeeeCCCCCC-CcccccccCCCccccCCCCCeeccC
Q 045234 12 ISEIWCFKCKH--GGELRLCDNTRCL-KVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 12 ~~ed~C~vC~d--GGeLv~CD~~~CP-kaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
....+| +|++ +|++|.||...|| ..||..||++... |.+.|+||.
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~---p~g~W~Cp~ 81 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTK---PRGKWFCPR 81 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSC---CCSSCCCTT
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcC---CCCCEECcC
Confidence 345678 8998 7999999933399 6999999998765 789999994
No 35
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.32 E-value=1.9e-07 Score=70.36 Aligned_cols=47 Identities=23% Similarity=0.466 Sum_probs=37.9
Q ss_pred cccccccceeccC---CceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 11 EISEIWCFKCKHG---GELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 11 ~~~ed~C~vC~dG---GeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
..+..+|.+|+.+ +.+|.|| .|+..||..||++.... .+.+.|+||.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~~~~-~~~~~w~C~~ 64 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIMAAP-PEEMQWFCPK 64 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCSSCC-CSSSCCCCTT
T ss_pred CCCCcCCCCCCCCCCCCCEEEcC--CCCcccccccCCCCccC-CCCCCEEChh
Confidence 3456679999864 4799999 99999999999987652 2568999984
No 36
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.31 E-value=1.8e-07 Score=85.05 Aligned_cols=45 Identities=24% Similarity=0.537 Sum_probs=34.0
Q ss_pred ccccceecc---CCceeeeCCCCCCCcccccccCCCccccCCCC-CeeccCC
Q 045234 14 EIWCFKCKH---GGELRLCDNTRCLKVYHPECVDKDESFLAAKT-KWICNWH 61 (299)
Q Consensus 14 ed~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g-~W~Cp~H 61 (299)
+..|.+|+. +|+|++|| +|+++||..||+|+... .|.| .|+||.|
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~PPL~~-vP~G~~W~Cp~C 222 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSS-VPSEDEWYCPEC 222 (226)
T ss_dssp TTSCSSSCCCCC--CCEECS--SSCCEECSCC--CCCCS-CCSSSCCCCGGG
T ss_pred CCCCcCCCCCCCCCCeEEcC--CCCcceeCccCCCCccc-CCCCCCCCCcCC
Confidence 457999986 78999999 99999999999975442 4788 9999953
No 37
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.30 E-value=2.7e-07 Score=70.87 Aligned_cols=42 Identities=26% Similarity=0.614 Sum_probs=33.0
Q ss_pred ccceeccC---CceeeeCCCCCCCcccccccCCCccccCCCCC-eeccC
Q 045234 16 WCFKCKHG---GELRLCDNTRCLKVYHPECVDKDESFLAAKTK-WICNW 60 (299)
Q Consensus 16 ~C~vC~dG---GeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~-W~Cp~ 60 (299)
.|.+|+.+ ++||+|| .|+++||..||++... ..|.+. |+||.
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~PpL~-~~P~g~~W~C~~ 73 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLS-SVPSEDEWYCPE 73 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSCCS-SCCSSSCCCCTT
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCCCccc-CCCCCCceECcC
Confidence 35555543 6899999 9999999999997543 237888 99995
No 38
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.28 E-value=2.4e-07 Score=75.40 Aligned_cols=42 Identities=26% Similarity=0.716 Sum_probs=35.3
Q ss_pred ccceecc---CCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 16 WCFKCKH---GGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 16 ~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
.|.+|+. +|+||.|| .|+++||..|++++.. ..|.+.|+||.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~-~~P~g~W~C~~ 104 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCD--DCDRGYHMYCLNPPVA-EPPEGSWSCHL 104 (114)
T ss_dssp CCTTTTCCTTTTTEEECS--SSCCEEETTTSSSCCS-SCCSSCCCCHH
T ss_pred ccCcccccCCCCceEEcC--CCCccccccccCCCcc-CCCCCCeECcc
Confidence 5888886 68999999 9999999999997543 24899999983
No 39
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.28 E-value=4.7e-07 Score=69.48 Aligned_cols=54 Identities=20% Similarity=0.464 Sum_probs=45.2
Q ss_pred CCCCeeccCCccccccCC----ceeccccCCCCCCCcccCccccccccCCc-ccccccHH
Q 045234 52 AKTKWICNWHFCGVCRKA----SKFYCFCCPSAVCKTCLYDIQFALVKENK-GFCNSCLE 106 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~----~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~-~~C~~C~~ 106 (299)
.++.|+|+.+.|.+|++. .++.|+.|+.+||..||.+++.. ++.+. |+|+.|.+
T Consensus 18 ~~~~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~-~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 18 DDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSS-VPSEDEWYCPECRN 76 (77)
T ss_dssp TCTTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSS-CCSSSCCCCTTTC-
T ss_pred CCCCCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccC-CCCCCceECcCccc
Confidence 457899999999999986 37899999999999999988654 45556 99999963
No 40
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.26 E-value=1e-07 Score=81.81 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=65.0
Q ss_pred ccccccceeccC----CceeeeCCCCCCCcccccccCCCccccCCCCCeeccCCccccccCCceeccccCCCCCCCcccC
Q 045234 12 ISEIWCFKCKHG----GELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWHFCGVCRKASKFYCFCCPSAVCKTCLY 87 (299)
Q Consensus 12 ~~ed~C~vC~dG----GeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H~C~~C~~~~~~~C~~Cp~s~c~~CL~ 87 (299)
.+..+| +|+.+ |.+|.|| .|++.||..|+++........+.|+|| .|.........
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~-----~C~~~~~~~~~------------ 65 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVGILQSEAELIDEYVCP-----QCQSTEDAMTV------------ 65 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCH-----HHHHHHHHHTT------------
T ss_pred CCCcEe-eCCCCCCCCCCEeECC--CCCchhChhhcCCchhhccCccCeecC-----CCcchhccccc------------
Confidence 456789 89864 5699999 999999999999865422346789998 35432211000
Q ss_pred ccccccccCCcccccccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 88 DIQFALVKENKGFCNSCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 88 ~~~~~~v~~~~~~C~~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
...+. .-.=..|.++...|.+..... .|.. .-+ .-.+.+|+++||.+|+|+
T Consensus 66 ~~~l~-----~~~~~~l~~il~~l~~~~~~~----~F~~-pv~-~~~~pdY~~~I~~PmdL~ 116 (174)
T 2ri7_A 66 LTPLT-----EKDYEGLKRVLRSLQAHKMAW----PFLE-PVD-PNDAPDYYGVIKEPMDLA 116 (174)
T ss_dssp TSBCC-----HHHHHHHHHHHHHHHTSGGGT----TTSS-CCC-TTTCHHHHHHCSSCCCHH
T ss_pred cccCC-----HHHHHHHHHHHHHHHhhhhhh----hhhc-CCC-cccCCchHHHhCCcCCHH
Confidence 00000 000124666666666543332 5766 221 125789999999999773
No 41
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.26 E-value=4.2e-07 Score=68.35 Aligned_cols=53 Identities=21% Similarity=0.472 Sum_probs=44.8
Q ss_pred CCCCeeccCCccccccCC----ceeccccCCCCCCCcccCccccccccCC-cccccccH
Q 045234 52 AKTKWICNWHFCGVCRKA----SKFYCFCCPSAVCKTCLYDIQFALVKEN-KGFCNSCL 105 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~----~~~~C~~Cp~s~c~~CL~~~~~~~v~~~-~~~C~~C~ 105 (299)
.+..|+|+.+.|.+|++. .++.|+.|+.+||..||.+++.. ++.+ .|+|+.|.
T Consensus 10 ~~~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~-~P~g~~W~C~~C~ 67 (70)
T 3asl_A 10 DDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSS-VPSEDEWYCPECR 67 (70)
T ss_dssp TCTTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSS-CCSSSCCCCTTTS
T ss_pred CCCCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCC-CCCCCCcCCcCcc
Confidence 446799999999999963 47899999999999999977543 5666 99999995
No 42
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.20 E-value=6.1e-07 Score=70.87 Aligned_cols=44 Identities=34% Similarity=0.883 Sum_probs=36.1
Q ss_pred ccccccceecc--CCceeeeCCCCCC-CcccccccCCCccccCCCCCeecc
Q 045234 12 ISEIWCFKCKH--GGELRLCDNTRCL-KVYHPECVDKDESFLAAKTKWICN 59 (299)
Q Consensus 12 ~~ed~C~vC~d--GGeLv~CD~~~CP-kaYH~~Cl~~~~~~~~~~g~W~Cp 59 (299)
....+| +|+. .|++|.||.-.|| ..||..||++... |.+.|+||
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~~---p~~~W~Cp 70 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLKQA---PKGKWYCS 70 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCSSC---TTSCCCSS
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCCcC---CCCCccCC
Confidence 445678 7985 6899999944488 7999999999876 77999998
No 43
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=1.2e-06 Score=67.12 Aligned_cols=51 Identities=27% Similarity=0.448 Sum_probs=43.5
Q ss_pred CCeeccCCccccccCC----ceeccccCCCCCCCcccCccccccccCC-cccccccH
Q 045234 54 TKWICNWHFCGVCRKA----SKFYCFCCPSAVCKTCLYDIQFALVKEN-KGFCNSCL 105 (299)
Q Consensus 54 g~W~Cp~H~C~~C~~~----~~~~C~~Cp~s~c~~CL~~~~~~~v~~~-~~~C~~C~ 105 (299)
..|.|+...|.+|+.. .++.|+.|+.+||..||.+++.. ++.+ .|+|+.|.
T Consensus 20 ~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~-~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDK-VPEEEYWYCPSCK 75 (77)
T ss_dssp SSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSS-CCCSSCCCCTTTC
T ss_pred CCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccC-CCCCCCcCCcCcc
Confidence 5699999999999963 57899999999999999987544 5666 99999995
No 44
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.02 E-value=2.7e-06 Score=67.66 Aligned_cols=40 Identities=23% Similarity=0.563 Sum_probs=32.3
Q ss_pred cceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 17 CFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 17 C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
|..+.++|.+|.|| .|++.||..|++++... ....|+||.
T Consensus 33 C~~~~~~~~mi~Cd--~C~~w~H~~C~~~~~~~--~p~~w~C~~ 72 (98)
T 2lv9_A 33 CGFTHDDGYMICCD--KCSVWQHIDCMGIDRQH--IPDTYLCER 72 (98)
T ss_dssp TSCCSCSSCEEEBT--TTCBEEETTTTTCCTTS--CCSSBCCTT
T ss_pred CCCccCCCcEEEcC--CCCCcCcCcCCCCCccC--CCCCEECCC
Confidence 55566789999999 99999999999986542 235799984
No 45
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.91 E-value=4.7e-06 Score=75.77 Aligned_cols=53 Identities=21% Similarity=0.452 Sum_probs=43.4
Q ss_pred CCCCeeccCCccccccCC----ceeccccCCCCCCCcccCccccccccCC-cccccccH
Q 045234 52 AKTKWICNWHFCGVCRKA----SKFYCFCCPSAVCKTCLYDIQFALVKEN-KGFCNSCL 105 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~----~~~~C~~Cp~s~c~~CL~~~~~~~v~~~-~~~C~~C~ 105 (299)
+++.|.|+.+.|.+|+.. .++.|+.|+.+||..||.+++- .++.+ .|+|+.|.
T Consensus 166 ~~~~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~-~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 166 DDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS-SVPSEDEWYCPECR 223 (226)
T ss_dssp TCTTSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCC-SCCSSSCCCCGGGC
T ss_pred CCcCEecCCCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcc-cCCCCCCCCCcCCc
Confidence 456899999999999973 5789999999999999998754 35676 99999995
No 46
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.76 E-value=1.4e-05 Score=62.89 Aligned_cols=55 Identities=16% Similarity=0.313 Sum_probs=45.4
Q ss_pred CCCCeeccCC-ccccccCCc----eeccccCCCCCCCcccCccccccccCCcccccccHHH
Q 045234 52 AKTKWICNWH-FCGVCRKAS----KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLEL 107 (299)
Q Consensus 52 ~~g~W~Cp~H-~C~~C~~~~----~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~l 107 (299)
....|.|... .|.+|+... ++.|+.|+.+||..|+.+++. .++.+.|+|+.|..-
T Consensus 7 ~~s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~-~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 7 GHSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP-EIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCS-SCCSSCCCCHHHHHH
T ss_pred CCchhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcc-cCCCCCcCCccCcCc
Confidence 4567888865 799999874 789999999999999997654 468889999999643
No 47
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=1.3e-05 Score=60.27 Aligned_cols=45 Identities=38% Similarity=0.781 Sum_probs=35.8
Q ss_pred ccccccceecc--CCceeeeCCCCCC-CcccccccCCCccccCCCCCeeccC
Q 045234 12 ISEIWCFKCKH--GGELRLCDNTRCL-KVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 12 ~~ed~C~vC~d--GGeLv~CD~~~CP-kaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
.+..+|+ |.. .|++|.||.-.|| ..||..||++... |.+.|+||.
T Consensus 4 ~~~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~~---p~~~w~Cp~ 51 (70)
T 1x4i_A 4 GSSGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEA---PKGKWYCPQ 51 (70)
T ss_dssp SCCCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHTCSSC---CSSCCCCHH
T ss_pred CCCeEEE-cCCCCCCCEeEeCCCCCCccCCcccccccCcC---CCCCEECCC
Confidence 4556786 874 6799999943476 6999999999875 789999983
No 48
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=97.70 E-value=1.4e-05 Score=57.80 Aligned_cols=47 Identities=26% Similarity=0.565 Sum_probs=37.8
Q ss_pred ccccccCCc-eeccccCCCCCCCcccCccccccccCCcccccccHHHHH
Q 045234 62 FCGVCRKAS-KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLELAW 109 (299)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~l~~ 109 (299)
.|.+|++.+ ++.|+.|+.+||..|+.++.. .++.+.|+|+.|.....
T Consensus 7 ~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~-~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 7 FCSVCRKSGQLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQDQML 54 (60)
T ss_dssp SCTTTCCCSSCEECSSSSCEECGGGSSSCCS-SCCCSCCCCHHHHHHHH
T ss_pred CCcCCCCCCcEEEcCCCCcCEECCcCCCCcC-CCCCCceEChhccChhh
Confidence 467898764 678999999999999997644 35788999999975443
No 49
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=97.68 E-value=2.2e-05 Score=57.20 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=35.5
Q ss_pred ccccccCCc-eeccccCCCCCCCcccCccccccccCCcccccccH
Q 045234 62 FCGVCRKAS-KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
.|.+|+... ++.|+.|+.+||..|+.+++. .++.+.|+|+.|.
T Consensus 11 ~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~-~~p~g~W~C~~C~ 54 (61)
T 1mm2_A 11 FCRVCKDGGELLCCDTCPSSYHIHCLNPPLP-EIPNGEWLCPRCT 54 (61)
T ss_dssp SCTTTCCCSSCBCCSSSCCCBCSSSSSSCCS-SCCSSCCCCTTTT
T ss_pred cCCCCCCCCCEEEcCCCCHHHcccccCCCcC-cCCCCccCChhhc
Confidence 467888764 688999999999999997644 4578899999995
No 50
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=1.4e-05 Score=57.13 Aligned_cols=43 Identities=28% Similarity=0.620 Sum_probs=35.3
Q ss_pred ccccccCCc-eeccccCCCCCCCcccCccccccccCCcccccccH
Q 045234 62 FCGVCRKAS-KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
.|.+|++.. ++.|+.|+.+||..|+.+++. .++.+.|+|+.|.
T Consensus 11 ~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~-~~p~g~W~C~~C~ 54 (56)
T 2yql_A 11 FCSVCRKSGQLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQ 54 (56)
T ss_dssp SCSSSCCSSCCEECSSSSCEECSSSSSSCCC-SCCCSSCCCHHHH
T ss_pred CCccCCCCCeEEEcCCCCcceECccCCCCcC-CCCCCceEChhhh
Confidence 356888764 678999999999999997644 3578899999996
No 51
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.66 E-value=1.9e-05 Score=62.15 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=36.6
Q ss_pred ccccccCCc-eeccccCCCCCCCcccCccccccccCCcccccccH
Q 045234 62 FCGVCRKAS-KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
.|.+|++++ ++.|+.|+.+||..|+.++.. .++.+.|+|+.|.
T Consensus 27 ~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~-~~P~g~W~C~~C~ 70 (88)
T 1fp0_A 27 ICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCH 70 (88)
T ss_dssp CCSSSCSSSCCEECTTSSCEECTTSSSTTCC-CCCSSSCCCCSCC
T ss_pred cCcCcCCCCCEEECCCCCCceecccCCCCCC-CCcCCCcCCcccc
Confidence 678999765 688999999999999987654 4588999999996
No 52
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.65 E-value=1.2e-05 Score=59.72 Aligned_cols=44 Identities=25% Similarity=0.533 Sum_probs=36.9
Q ss_pred CccccccCCc-eeccccCCCCCCCcccCccccccccCCcccccccH
Q 045234 61 HFCGVCRKAS-KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 61 H~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
..|.+|++.. ++.|+.|+.+||..|+.+.+.. ++.+.|+|..|.
T Consensus 13 ~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~-~P~g~W~C~~C~ 57 (66)
T 2lri_C 13 ARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTS-RPGTGLRCRSCS 57 (66)
T ss_dssp CCCTTTSCCTTCEECSSSCCEECHHHHCTTTCC-CCSSSCCCTTTT
T ss_pred CCcCCCCCCCeEEECCCCCCceecccCCCccCc-CCCCCEECcccc
Confidence 4588998875 6889999999999999876544 588899999995
No 53
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=97.64 E-value=1.7e-05 Score=58.48 Aligned_cols=48 Identities=31% Similarity=0.559 Sum_probs=37.6
Q ss_pred CCCCeeccCCccccccCC-ceeccccCCCCCCCcccCccccccccCCcccccccH
Q 045234 52 AKTKWICNWHFCGVCRKA-SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~-~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
+..+++| .+|+.. .++.|+.|+.+||..|+.+++. .++.+.|+|+.|.
T Consensus 5 ~~~~~~C-----~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~-~~P~g~W~C~~C~ 53 (66)
T 1xwh_A 5 QKNEDEC-----AVCRDGGELICCDGCPRAFHLACLSPPLR-EIPSGTWRCSSCL 53 (66)
T ss_dssp CSCCCSB-----SSSSCCSSCEECSSCCCEECTTTSSSCCS-SCCSSCCCCHHHH
T ss_pred CCCCCCC-----ccCCCCCCEEEcCCCChhhcccccCCCcC-cCCCCCeECcccc
Confidence 3455555 578876 4688999999999999997644 3578899999995
No 54
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.60 E-value=1.5e-05 Score=55.65 Aligned_cols=44 Identities=30% Similarity=0.569 Sum_probs=36.3
Q ss_pred ccccccCCc----eeccccCCCCCCCcccCccccccccCCcccccccHH
Q 045234 62 FCGVCRKAS----KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLE 106 (299)
Q Consensus 62 ~C~~C~~~~----~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~ 106 (299)
.|.+|++.. ++.|+.|+.+||..|+.+++. .++.+.|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~-~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-EVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC-SCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcC-CCCCCcEECcCccc
Confidence 488898764 788999999999999987543 45788999999953
No 55
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.54 E-value=2.9e-05 Score=60.54 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=39.5
Q ss_pred CccccccCC------ceeccccCCCCCCCcccCccccc---cccCCcccccccHHHH
Q 045234 61 HFCGVCRKA------SKFYCFCCPSAVCKTCLYDIQFA---LVKENKGFCNSCLELA 108 (299)
Q Consensus 61 H~C~~C~~~------~~~~C~~Cp~s~c~~CL~~~~~~---~v~~~~~~C~~C~~l~ 108 (299)
..|.+|++. .++.|+.|+.+||..|+.+++.. .++.+.|+|..|....
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 368899876 47899999999999999987654 3688999999997544
No 56
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=97.52 E-value=2.2e-05 Score=57.20 Aligned_cols=44 Identities=30% Similarity=0.598 Sum_probs=35.8
Q ss_pred ccccccCCc-eeccccCCCCCCCcccCccccccccCCcccccccHH
Q 045234 62 FCGVCRKAS-KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLE 106 (299)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~ 106 (299)
.|.+|+... ++.|+.|+.+||..|+.++.. .++.+.|+|+.|..
T Consensus 13 ~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~-~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 13 YCEVCQQGGEIILCDTCPRAYHMVCLDPDME-KAPEGKWSCPHCEK 57 (61)
T ss_dssp SCTTTSCCSSEEECSSSSCEEEHHHHCTTCC-SCCCSSCCCTTGGG
T ss_pred CCccCCCCCcEEECCCCChhhhhhccCCCCC-CCCCCceECccccc
Confidence 456888764 688999999999999997643 35788999999964
No 57
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.46 E-value=5e-05 Score=55.27 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=36.9
Q ss_pred cccccccceecc----CCceeeeCCCCCCCcccccccCCCccccCCCCCeecc
Q 045234 11 EISEIWCFKCKH----GGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICN 59 (299)
Q Consensus 11 ~~~ed~C~vC~d----GGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp 59 (299)
..+..+|.+|+. ++.+|.|| .|...||..|+++..........|+||
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 53 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCP 53 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCH
T ss_pred CCCCCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECC
Confidence 356678988984 57899999 999999999999875422224789998
No 58
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.40 E-value=4.5e-05 Score=59.68 Aligned_cols=52 Identities=21% Similarity=0.648 Sum_probs=41.0
Q ss_pred cccccccccccceec--cCCceeeeCCCCCCCcccccccCCC-----c------cccCCCCCeeccC
Q 045234 7 LKKEEISEIWCFKCK--HGGELRLCDNTRCLKVYHPECVDKD-----E------SFLAAKTKWICNW 60 (299)
Q Consensus 7 rk~~~~~ed~C~vC~--dGGeLv~CD~~~CPkaYH~~Cl~~~-----~------~~~~~~g~W~Cp~ 60 (299)
++++..+|+.|.||. ..++|+-|. .|+|+||..||.+. . ....+...|.|+.
T Consensus 8 ~~e~~~~D~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~ 72 (89)
T 1wil_A 8 PREPVVNDEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHY 72 (89)
T ss_dssp SCCCCCCSCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTT
T ss_pred cccCCCCCcccCccccccccceeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccc
Confidence 456778999999999 688999998 99999999999852 1 0012567899984
No 59
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=97.32 E-value=5.8e-05 Score=58.95 Aligned_cols=42 Identities=26% Similarity=0.679 Sum_probs=35.3
Q ss_pred ccccccCC------ceeccccCCCCCCCcccCccccccccCCcccccccHH
Q 045234 62 FCGVCRKA------SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLE 106 (299)
Q Consensus 62 ~C~~C~~~------~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~ 106 (299)
.|.+|+.+ .++.|+.|+.+||..|+.++. ++.+.|||+.|..
T Consensus 27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~ 74 (88)
T 2l43_A 27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS---CCSSCCCCHHHHH
T ss_pred cCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc---cCCCceECccccC
Confidence 46789876 478899999999999998763 5788999999963
No 60
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=97.31 E-value=7.2e-05 Score=54.63 Aligned_cols=44 Identities=18% Similarity=0.526 Sum_probs=35.6
Q ss_pred ccccccCC------ceeccccCCCCCCCcccCcccccc-c-cCCcccccccH
Q 045234 62 FCGVCRKA------SKFYCFCCPSAVCKTCLYDIQFAL-V-KENKGFCNSCL 105 (299)
Q Consensus 62 ~C~~C~~~------~~~~C~~Cp~s~c~~CL~~~~~~~-v-~~~~~~C~~C~ 105 (299)
.|.+|+.. .++.|+.|+.+||..|+.+++... + +.+.|+|..|.
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~ 59 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCc
Confidence 56789875 368899999999999999865432 3 78899999996
No 61
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=97.26 E-value=0.0001 Score=63.82 Aligned_cols=44 Identities=20% Similarity=0.571 Sum_probs=36.3
Q ss_pred ccccccCCc-eeccccCCCCCCCcccCccccccccCCcccccccHH
Q 045234 62 FCGVCRKAS-KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLE 106 (299)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~ 106 (299)
.|.+|++++ ++.|+.|+.+||..|+.++.. .++.+.|+|+.|..
T Consensus 6 ~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~-~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 6 WCAVCQNGGELLCCEKCPKVFHLSCHVPTLT-NFPSGEWICTFCRD 50 (184)
T ss_dssp SCTTTCCCSSCEECSSSSCEECTTTSSSCCS-SCCSSCCCCTTTSC
T ss_pred ccccCCCCCeeeecCCCCcccCccccCCCCC-CCCCCCEECccccC
Confidence 477898765 678999999999999987654 45788899999963
No 62
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=97.26 E-value=4.8e-05 Score=65.79 Aligned_cols=51 Identities=25% Similarity=0.597 Sum_probs=41.9
Q ss_pred ccccccccccceeccCCceeeeCCCCCCCcccccccCCCccc-----cCCCCCeec
Q 045234 8 KKEEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESF-----LAAKTKWIC 58 (299)
Q Consensus 8 k~~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~-----~~~~g~W~C 58 (299)
+.++..+.+|.+|++||+|++||...|+++|-..||...... +.....|.|
T Consensus 73 ~DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~C 128 (159)
T 3a1b_A 73 YDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNC 128 (159)
T ss_dssp BCTTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCC
T ss_pred cCCCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEE
Confidence 567888999999999999999998889999999999853221 135678987
No 63
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=97.25 E-value=5.5e-05 Score=56.95 Aligned_cols=42 Identities=26% Similarity=0.679 Sum_probs=35.5
Q ss_pred ccccccCC------ceeccccCCCCCCCcccCccccccccCCcccccccHH
Q 045234 62 FCGVCRKA------SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLE 106 (299)
Q Consensus 62 ~C~~C~~~------~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~ 106 (299)
.|.+|++. .++.|+.|+.+||..|+.++. ++.+.|||+.|..
T Consensus 18 ~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 18 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQ 65 (71)
T ss_dssp SCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS---CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc---CCCCCcCCccCcC
Confidence 57789876 478999999999999998763 5788999999964
No 64
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=97.24 E-value=0.00014 Score=63.90 Aligned_cols=46 Identities=24% Similarity=0.435 Sum_probs=37.8
Q ss_pred CccccccCCc-eeccccCCCCCCCcccCccccccccCCcccccccHHH
Q 045234 61 HFCGVCRKAS-KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLEL 107 (299)
Q Consensus 61 H~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~l 107 (299)
..|.+|+.++ ++.|+.|+.+||..|+.++.. .++.+.|+|+.|...
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~-~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCS-SCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcc-cCCCCCCCCcCccCC
Confidence 3689999875 688999999999999987644 357889999999643
No 65
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.23 E-value=0.00011 Score=64.84 Aligned_cols=43 Identities=23% Similarity=0.605 Sum_probs=35.8
Q ss_pred ccccccCCc-eeccccCCCCCCCcccCccccccccCCcccccccH
Q 045234 62 FCGVCRKAS-KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
.|.+|++++ ++.|+.|+.+||..|+.++.. .++.+.|+|+.|.
T Consensus 9 ~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~-~~p~~~W~C~~C~ 52 (207)
T 3u5n_A 9 WCAVCQNGGDLLCCEKCPKVFHLTCHVPTLL-SFPSGDWICTFCR 52 (207)
T ss_dssp SBTTTCCCEEEEECSSSSCEECTTTSSSCCS-SCCSSCCCCTTTS
T ss_pred CCCCCCCCCceEEcCCCCCccCCccCCCCCC-CCCCCCEEeCcee
Confidence 467898775 678999999999999987654 3578899999996
No 66
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.90 E-value=0.00028 Score=53.56 Aligned_cols=46 Identities=20% Similarity=0.515 Sum_probs=34.7
Q ss_pred ccccccceecc----CCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 12 ISEIWCFKCKH----GGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 12 ~~ed~C~vC~d----GGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
...-+| +|+. +|.+|.|| .|...||..|+++..........|+||.
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 59 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPD 59 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTT
T ss_pred CCccEE-EcCCccCCCCceEEcC--CCCCcEEeeecCcccccccCCCeEECCC
Confidence 344567 6875 57899999 8999999999998755322347899983
No 67
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.79 E-value=0.00058 Score=51.80 Aligned_cols=46 Identities=20% Similarity=0.525 Sum_probs=35.4
Q ss_pred cccccceecc---CCceeeeCCCCCCCcccccccCCCcccc----CCCCCeecc
Q 045234 13 SEIWCFKCKH---GGELRLCDNTRCLKVYHPECVDKDESFL----AAKTKWICN 59 (299)
Q Consensus 13 ~ed~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~~~~~~----~~~g~W~Cp 59 (299)
..-+| +|+. +|.+|.||...|+..||..||++..... .....|+||
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECC
Confidence 34568 6985 5899999987899999999999876421 124689998
No 68
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.62 E-value=0.0011 Score=49.41 Aligned_cols=45 Identities=20% Similarity=0.449 Sum_probs=34.5
Q ss_pred cccccccceecc---CCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 11 EISEIWCFKCKH---GGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 11 ~~~ed~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
....-+| +|+. |+.+|.|| .|...||..|+++.... ..+.|+||.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~~~~--~~~~~~C~~ 63 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKSN--VPEVFVCQK 63 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCCTTS--CCSSCCCHH
T ss_pred CCCceEe-ECCCcCCCCCEEECC--CCCccccccccCcCccc--CCCcEECCC
Confidence 3445668 7875 45799999 89999999999987642 346899883
No 69
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=96.61 E-value=0.00029 Score=59.79 Aligned_cols=45 Identities=24% Similarity=0.590 Sum_probs=36.2
Q ss_pred CccccccCCc-eeccccCCCCCCCcccCcccc----cc--ccCCcccccccH
Q 045234 61 HFCGVCRKAS-KFYCFCCPSAVCKTCLYDIQF----AL--VKENKGFCNSCL 105 (299)
Q Consensus 61 H~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~~----~~--v~~~~~~C~~C~ 105 (299)
.+|.+|+.++ ++.|+.||++||..|+.++.- .. .+.+.|.|..|.
T Consensus 64 d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 64 EQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 4788999875 788999999999999986642 22 267899999884
No 70
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=96.60 E-value=0.00032 Score=68.22 Aligned_cols=52 Identities=29% Similarity=0.662 Sum_probs=42.3
Q ss_pred ccccccccccceeccCCceeeeCCCCCCCcccccccCCCccc-----cCCCCCeecc
Q 045234 8 KKEEISEIWCFKCKHGGELRLCDNTRCLKVYHPECVDKDESF-----LAAKTKWICN 59 (299)
Q Consensus 8 k~~~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~-----~~~~g~W~Cp 59 (299)
+.++..+.+|.+|++||+|++||...|+++|-..|+...... +.....|.|=
T Consensus 87 ~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf 143 (386)
T 2pv0_B 87 YDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCY 143 (386)
T ss_dssp BCSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCT
T ss_pred cCCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEE
Confidence 567888999999999999999999999999999999854310 1245789874
No 71
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.38 E-value=0.00092 Score=53.62 Aligned_cols=45 Identities=33% Similarity=0.731 Sum_probs=35.0
Q ss_pred ccccceeccC----CceeeeCCCCCCCcccccccCCCccc---c--CCCCCeecc
Q 045234 14 EIWCFKCKHG----GELRLCDNTRCLKVYHPECVDKDESF---L--AAKTKWICN 59 (299)
Q Consensus 14 ed~C~vC~dG----GeLv~CD~~~CPkaYH~~Cl~~~~~~---~--~~~g~W~Cp 59 (299)
...|.+|+.. |++|.|| ..|...||..|++++... + .+.+.|+||
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp 56 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACD 56 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCH
T ss_pred cCCCCCCCCccCCCCCEEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECc
Confidence 3468999865 7899886 379999999999997521 1 366899998
No 72
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.37 E-value=0.00069 Score=50.87 Aligned_cols=44 Identities=27% Similarity=0.720 Sum_probs=33.6
Q ss_pred cccccceecc---CCceeeeCCCCCCCcccccccCCCcccc----CCCCCeecc
Q 045234 13 SEIWCFKCKH---GGELRLCDNTRCLKVYHPECVDKDESFL----AAKTKWICN 59 (299)
Q Consensus 13 ~ed~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~~~~~~----~~~g~W~Cp 59 (299)
+.-+| +|+. ++.+|.|| .|...||..|+++..... .+...|+||
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 45678 6986 46899999 899999999999875410 024789998
No 73
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=96.30 E-value=0.0017 Score=52.52 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=32.7
Q ss_pred ccccccCCc-eeccc--cCCCCCCCcccCccccccccCCccccccc
Q 045234 62 FCGVCRKAS-KFYCF--CCPSAVCKTCLYDIQFALVKENKGFCNSC 104 (299)
Q Consensus 62 ~C~~C~~~~-~~~C~--~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C 104 (299)
.|.+|+.++ ++.|+ .||.+||..|+. +..++.+.|+|+.|
T Consensus 17 ~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~---L~~~P~g~W~Cp~c 59 (107)
T 4gne_A 17 YCFQCGDGGELVMCDKKDCPKAYHLLCLN---LTQPPYGKWECPWH 59 (107)
T ss_dssp SCTTTCCCSEEEECCSTTCCCEECTGGGT---CSSCCSSCCCCGGG
T ss_pred CCCcCCCCCcEeEECCCCCCcccccccCc---CCcCCCCCEECCCC
Confidence 467888765 67899 899999999997 45568889999966
No 74
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.22 E-value=0.002 Score=47.94 Aligned_cols=44 Identities=27% Similarity=0.590 Sum_probs=33.1
Q ss_pred ccccccceeccC---C-ceeeeCCCCCCCcccccccCCCccccCCCCCeecc
Q 045234 12 ISEIWCFKCKHG---G-ELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICN 59 (299)
Q Consensus 12 ~~ed~C~vC~dG---G-eLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp 59 (299)
...-+| +|+.. | .+|.|| .|-..||..|+++.... .....|+||
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~~~~-~~~~~~~C~ 61 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACD--GCGVWHHTRCIGINNAD-ALPSKFLCF 61 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECS--SSCEEEETTTTTCCTTS-CCCSCCCCH
T ss_pred CcceEe-eCCCccCCCCcEEECC--CCCCccCCeeeccCccc-cCCCcEECC
Confidence 344568 59842 4 699999 89999999999987531 145789998
No 75
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=96.10 E-value=0.0016 Score=48.61 Aligned_cols=48 Identities=25% Similarity=0.516 Sum_probs=36.3
Q ss_pred CCCeeccCCccccccCC----ceeccccCCCCCCCcccCccccccccCCcccccccHH
Q 045234 53 KTKWICNWHFCGVCRKA----SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLE 106 (299)
Q Consensus 53 ~g~W~Cp~H~C~~C~~~----~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~ 106 (299)
...++|+ +|++. ..+.|+.|+..||..|+...... ++.+.|+|+.|..
T Consensus 16 ~~~~~C~-----~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~-~~~~~w~C~~C~~ 67 (75)
T 2k16_A 16 NQIWICP-----GCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAP-PEEMQWFCPKCAN 67 (75)
T ss_dssp CEEECBT-----TTTBCCSSCCEEECSSSSSEEEHHHHTCSSCC-CSSSCCCCTTTHH
T ss_pred CCCcCCC-----CCCCCCCCCCEEEcCCCCcccccccCCCCccC-CCCCCEEChhccC
Confidence 4456664 78775 36889999999999999866443 2457899999964
No 76
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=96.01 E-value=0.00095 Score=55.80 Aligned_cols=43 Identities=26% Similarity=0.731 Sum_probs=34.5
Q ss_pred ccccccCCc-eeccccCCCCCCCcccCccc----cccc--cCCccccccc
Q 045234 62 FCGVCRKAS-KFYCFCCPSAVCKTCLYDIQ----FALV--KENKGFCNSC 104 (299)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~s~c~~CL~~~~----~~~v--~~~~~~C~~C 104 (299)
.|.+|+.++ ++.|+.||++||..|+.+.. +..+ +.+.|.|..|
T Consensus 59 ~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C 108 (129)
T 3ql9_A 59 QCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYIC 108 (129)
T ss_dssp SCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTT
T ss_pred cCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCc
Confidence 577899875 67899999999999998652 3333 6789999977
No 77
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=95.72 E-value=0.002 Score=45.14 Aligned_cols=43 Identities=21% Similarity=0.497 Sum_probs=31.5
Q ss_pred cceecc----CCceeeeCCCCCCCcccccccCCCccccCCCCCeeccCC
Q 045234 17 CFKCKH----GGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWH 61 (299)
Q Consensus 17 C~vC~d----GGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H 61 (299)
|-+|+. ++.+|.||. .|..-||..|++++.... ....|+||.+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~-~~~~~~C~~C 51 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMA-ENEDYICINC 51 (52)
T ss_dssp CTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHH-HHSCCCCSCC
T ss_pred CCCCcCccCCCCcEEEeCC-CCCccCcccccCCCcccc-CCCCEECCCC
Confidence 445553 567999995 599999999999875421 2378999853
No 78
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=95.69 E-value=0.0057 Score=42.76 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=28.7
Q ss_pred cCCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 22 HGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 22 dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
+||.+|.|| .|...||..|+++.... ....|+||.
T Consensus 14 ~~~~MI~Cd--~C~~W~H~~Cvgi~~~~--~~~~~~C~~ 48 (52)
T 3o7a_A 14 AGRPMIECN--ECHTWIHLSCAKIRKSN--VPEVFVCQK 48 (52)
T ss_dssp TTCCEEECT--TTCCEEETTTTTCCGGG--CCSSCCCHH
T ss_pred CCCCEEEcC--CCCccccccccCCCccc--CCCcEECcC
Confidence 467999999 89999999999987652 346898873
No 79
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=95.57 E-value=0.0026 Score=46.94 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=35.6
Q ss_pred ccccccceeccC----CceeeeCCCCCCCcccccccCCCccc-----cCCCCCeeccC
Q 045234 12 ISEIWCFKCKHG----GELRLCDNTRCLKVYHPECVDKDESF-----LAAKTKWICNW 60 (299)
Q Consensus 12 ~~ed~C~vC~dG----GeLv~CD~~~CPkaYH~~Cl~~~~~~-----~~~~g~W~Cp~ 60 (299)
+....|.+|+.+ ..+|.||. .|.+.||..|++++... ..|.+.|+||.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~ 62 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCDT 62 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHH
T ss_pred CCcCcCccCCCccCCCCCeEeccc-CccccCchhccCCCHHHHHHhhccCCCcEECcC
Confidence 445679999863 46999995 89999999999997531 13677999983
No 80
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=95.46 E-value=0.0064 Score=44.78 Aligned_cols=45 Identities=20% Similarity=0.495 Sum_probs=32.1
Q ss_pred ccccceec---cCCceeeeCCCCCCCcccccccCCCcccc---CCCCCeecc
Q 045234 14 EIWCFKCK---HGGELRLCDNTRCLKVYHPECVDKDESFL---AAKTKWICN 59 (299)
Q Consensus 14 ed~C~vC~---dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~---~~~g~W~Cp 59 (299)
.-+| +|+ +.|.+|.||...|...||..|+++..... .....|+||
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 4557 585 36899999943499999999999864321 112479998
No 81
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=95.03 E-value=0.0067 Score=45.47 Aligned_cols=42 Identities=24% Similarity=0.608 Sum_probs=31.5
Q ss_pred cccceecc----CCceeeeCCCCCCCcccccccCCCccccCCCCCeecc
Q 045234 15 IWCFKCKH----GGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICN 59 (299)
Q Consensus 15 d~C~vC~d----GGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp 59 (299)
-+| +|+. ++.+|.|| .|...||..|+++..........|+||
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~ 56 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCP 56 (75)
T ss_dssp EET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCH
T ss_pred eEE-ECCCcCCCCCCEEEcC--CCCCCEecccccccccccCCCCEEECC
Confidence 345 4764 46899999 899999999999876522123679998
No 82
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=94.24 E-value=0.023 Score=42.47 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=29.5
Q ss_pred cccC---Cceecccc--CC-CCCCCcccCccccccccCCcccccccH
Q 045234 65 VCRK---ASKFYCFC--CP-SAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 65 ~C~~---~~~~~C~~--Cp-~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
+|++ +..+.|+. |+ ..||..|+.- ..++.+.|+|+.|.
T Consensus 20 ~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl---~~~p~g~w~Cp~C~ 63 (71)
T 1wen_A 20 LCHQVSYGEMIGCDNPDCSIEWFHFACVGL---TTKPRGKWFCPRCS 63 (71)
T ss_dssp TTCCCSCSSEECCSCSSCSCCCEETTTTTC---SSCCSSCCCCTTTS
T ss_pred ECCCCCCCCEeEeeCCCCCCccEecccCCc---CcCCCCCEECCCCC
Confidence 4665 34688999 99 6999999982 34466899999995
No 83
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=94.17 E-value=0.052 Score=45.21 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhh---hhhhhhHHHHHHHHhhhcccCCcCCCCeeecc-hhhHHHHHH-Hh------hhHHHHhcccCCC
Q 045234 216 LEMQKMLKLHART---LQEQNNKNTMVACRNHTQEALVKAMQLHVTCH-WNMWNLYLR-NH------HLQGLLNTMEFLP 284 (299)
Q Consensus 216 ~eL~~fl~~~g~~---lsr~~~v~k~lw~YIk~n~LqdP~~Kr~I~CD-~kL~~lF~~-~f------~m~klL~~H~~~p 284 (299)
++|..+|...|.. +..- +|.-.+-.||-.+.|.||.+...|.|- +.|..|||+ .| .++.+|.++++.-
T Consensus 29 ~~lL~iLq~aGA~~dvfT~k-eVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NLv~~ 107 (130)
T 3dac_M 29 APLLQILKVAGAQEEVFTVK-EVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNLVIL 107 (130)
T ss_dssp HHHHHHHHHTTCCCSSEEHH-HHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHEEEC
T ss_pred HHHHHHHHHhccCcceeehH-HHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhheecc
Confidence 5788999988765 8888 888889999999999999999999995 567799998 33 3667787776643
No 84
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=94.16 E-value=0.011 Score=42.77 Aligned_cols=46 Identities=20% Similarity=0.479 Sum_probs=32.5
Q ss_pred CCCCeeccCCccccccC---Cceecccc--CC-CCCCCcccCccccccccCCcccccccHH
Q 045234 52 AKTKWICNWHFCGVCRK---ASKFYCFC--CP-SAVCKTCLYDIQFALVKENKGFCNSCLE 106 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~---~~~~~C~~--Cp-~s~c~~CL~~~~~~~v~~~~~~C~~C~~ 106 (299)
++..-+| +|++ +..+.|+. |+ ..||..|+. +..++.+.|+|+.|..
T Consensus 7 ~~e~~~C------~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg---l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC------LCHQVSYGEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET------TTTEECCSEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE------ECCCcCCCCEEEeCCCCCCCceEehhcCC---CCcCCCCCEECcCccC
Confidence 4445555 4665 34678999 88 789999998 3345678999999963
No 85
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=94.13 E-value=0.02 Score=45.67 Aligned_cols=84 Identities=20% Similarity=0.338 Sum_probs=49.6
Q ss_pred ccceeccCCceeeeCCCCCCCcccccccCCCccccCCCCCeecc-----C----CccccccCC--------ceeccccCC
Q 045234 16 WCFKCKHGGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICN-----W----HFCGVCRKA--------SKFYCFCCP 78 (299)
Q Consensus 16 ~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp-----~----H~C~~C~~~--------~~~~C~~Cp 78 (299)
+|.+|+.. -|+ .|...||..|++.+...-..-..+.|. . -.|..|+.. .++.|..|.
T Consensus 9 ~C~~C~~~----~C~--~C~~c~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~c~~c~~c~~c~~~~~~~~~m~~C~~C~ 82 (117)
T 4bbq_A 9 KCKACVQG----ECG--VCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICN 82 (117)
T ss_dssp CSHHHHSC----CCS--CSHHHHHSGGGTSCCCSCCCCGGGCCSSCBCCTTCBCTTTCCBCCHHHHCCGGGSCEEETTTC
T ss_pred cCcCcCCc----CCC--CCCCCcCCcccCCCCccccchhheeeccccccccccccccCcccccccccccCcceEEeeecC
Confidence 46666554 388 899999999998653210111112221 1 123333321 256799999
Q ss_pred CCCCCcccCccccccc---cCCcccccccH
Q 045234 79 SAVCKTCLYDIQFALV---KENKGFCNSCL 105 (299)
Q Consensus 79 ~s~c~~CL~~~~~~~v---~~~~~~C~~C~ 105 (299)
..||..|+....-..+ ..+.|+|+.|.
T Consensus 83 ~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~ 112 (117)
T 4bbq_A 83 EIVHPGCLQMDGEGLLNEELPNCWECPKCY 112 (117)
T ss_dssp CEECGGGCCSCCCCEECSSSSSEEECTTTC
T ss_pred CeEECCCCCCCccccccccCCCCeECCCCc
Confidence 9999999985421112 23569999985
No 86
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=93.83 E-value=0.0073 Score=60.20 Aligned_cols=44 Identities=23% Similarity=0.594 Sum_probs=33.4
Q ss_pred ccccceecc----CCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 14 EIWCFKCKH----GGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 14 ed~C~vC~d----GGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
.-+| +|+. +|.+|.|| .|...||..|++.........+.|+||.
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CeEE-eCCCcCCCCCCeEEcc--CCCCceeeeecCcCcccccCCCEEECCC
Confidence 4557 6874 67899999 8999999999998765211236799983
No 87
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=93.70 E-value=0.048 Score=43.64 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhh---hhhhhhHHHHHHHHhhhcccCCcCCCCeeecc-hhhHHHHHH-Hh------hhHHHHhcccC
Q 045234 216 LEMQKMLKLHART---LQEQNNKNTMVACRNHTQEALVKAMQLHVTCH-WNMWNLYLR-NH------HLQGLLNTMEF 282 (299)
Q Consensus 216 ~eL~~fl~~~g~~---lsr~~~v~k~lw~YIk~n~LqdP~~Kr~I~CD-~kL~~lF~~-~f------~m~klL~~H~~ 282 (299)
++|..+|...|.. +..- +|.-.+-.||-.+.|.||.+...|.|. +.|-.|||+ .| .+..+|..|++
T Consensus 20 ~~lL~iLq~aGA~~d~fT~k-eVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nLv 96 (100)
T 3fea_A 20 LPLLKILHAAGAQGEMFTVK-EVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLV 96 (100)
T ss_dssp HHHHHHHHHTTCCSSCBCHH-HHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHEE
T ss_pred HHHHHHHHHhccCcceeehH-HHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhce
Confidence 5788999988765 8888 888889999999999999999999995 456789998 33 45677777664
No 88
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=93.21 E-value=0.072 Score=44.71 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhhh---hhhhhhHHHHHHHHhhhcccCCcCCCCeeecch-hhHHHHHH-H------hhhHHHHhcccCC
Q 045234 216 LEMQKMLKLHART---LQEQNNKNTMVACRNHTQEALVKAMQLHVTCHW-NMWNLYLR-N------HHLQGLLNTMEFL 283 (299)
Q Consensus 216 ~eL~~fl~~~g~~---lsr~~~v~k~lw~YIk~n~LqdP~~Kr~I~CD~-kL~~lF~~-~------f~m~klL~~H~~~ 283 (299)
++|+.+|...|.. +..- +|.-.|-.||-...|.||++...|.|.. .|-.|||. . -.++++|.+-++.
T Consensus 28 ~~LLkiLq~aGA~~~~fT~k-eVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~NLv~ 105 (140)
T 2z5s_M 28 APLLQILKVAGAQEEVFTLK-EVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRNLVI 105 (140)
T ss_dssp HHHHHHHHHTTCCCSCBCHH-HHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHHEEC
T ss_pred HHHHHHHHHhCcccceeeHH-HHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhccc
Confidence 5789999988765 8888 9999999999999999999999999964 55899998 2 3455666555443
No 89
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.93 E-value=0.021 Score=50.02 Aligned_cols=31 Identities=19% Similarity=0.662 Sum_probs=25.5
Q ss_pred cccceecc---C----CceeeeCCCCCCCcccccccCCCc
Q 045234 15 IWCFKCKH---G----GELRLCDNTRCLKVYHPECVDKDE 47 (299)
Q Consensus 15 d~C~vC~d---G----GeLv~CD~~~CPkaYH~~Cl~~~~ 47 (299)
.+|.+|+. . +.+|.|| .|-..||..|++++.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~~ 40 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLSD 40 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCCH
T ss_pred CcCCCCcCccCCcccCCCeEECC--CCCcccchhccccCH
Confidence 46888874 2 3499999 999999999999864
No 90
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=92.84 E-value=0.18 Score=40.80 Aligned_cols=65 Identities=11% Similarity=0.037 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhh---hhhhhhHHHHHHHHhhhcccCCcCCCCeeecch-hhHHHHHH-------HhhhHHHHhccc
Q 045234 216 LEMQKMLKLHART---LQEQNNKNTMVACRNHTQEALVKAMQLHVTCHW-NMWNLYLR-------NHHLQGLLNTME 281 (299)
Q Consensus 216 ~eL~~fl~~~g~~---lsr~~~v~k~lw~YIk~n~LqdP~~Kr~I~CD~-kL~~lF~~-------~f~m~klL~~H~ 281 (299)
.+|..+|...|.. .+.. +|.-.|-.||-...|.||.+.+.|.|.. .|-.|||. .-.++++|.+-+
T Consensus 16 ~~LLklL~~~GA~~~~fT~k-eVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 91 (107)
T 1ycq_A 16 PLLLSLLKSAGAQKETFTMK-EVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRNL 91 (107)
T ss_dssp HHHHHHHHHTTCCCSCBCHH-HHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTTE
T ss_pred HHHHHHHHHhccccceeeeh-hhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 5788899988765 8888 9999999999999999999999999965 55899998 334455555443
No 91
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=92.33 E-value=0.13 Score=42.18 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhh---hhhhhhHHHHHHHHhhhcccCCcCCCCeeecch-hhHHHHHH-------HhhhHHHHhcccCCC
Q 045234 216 LEMQKMLKLHART---LQEQNNKNTMVACRNHTQEALVKAMQLHVTCHW-NMWNLYLR-------NHHLQGLLNTMEFLP 284 (299)
Q Consensus 216 ~eL~~fl~~~g~~---lsr~~~v~k~lw~YIk~n~LqdP~~Kr~I~CD~-kL~~lF~~-------~f~m~klL~~H~~~p 284 (299)
.+|..+|...|.. ++.- +|.-.+-.||-...|.||++.+.|.|.. .|-.|||. .-.++++|.+-++.-
T Consensus 32 ~~LLkiLq~aGA~~~vfT~k-eV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nLv~~ 110 (119)
T 1z1m_A 32 PLLLKLLKSVGAQKDTYTMK-EVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVV 110 (119)
T ss_dssp TTSHHHHHHHTCCCSCCCTT-HHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCSCCCC
T ss_pred HHHHHHHHHhccccceeech-heeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhcccc
Confidence 3578888888765 8888 9999999999999999999999999965 55789987 345666676655433
No 92
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=92.08 E-value=0.11 Score=40.75 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=32.5
Q ss_pred cCCccccccCC-ceeccccCCCCCCCcccCccccccccCCcccccccH
Q 045234 59 NWHFCGVCRKA-SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 59 p~H~C~~C~~~-~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
..+.|..+... .++.|+.|+..||..|+....- .++ ..|+|+.|.
T Consensus 29 vrCiC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~-~~p-~~w~C~~C~ 74 (98)
T 2lv9_A 29 TRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQ-HIP-DTYLCERCQ 74 (98)
T ss_dssp CCCTTSCCSCSSCEEEBTTTCBEEETTTTTCCTT-SCC-SSBCCTTTS
T ss_pred EEeECCCccCCCcEEEcCCCCCcCcCcCCCCCcc-CCC-CCEECCCCc
Confidence 33455555543 4688999999999999986543 234 479999994
No 93
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.91 E-value=0.14 Score=40.18 Aligned_cols=45 Identities=20% Similarity=0.433 Sum_probs=32.8
Q ss_pred CCCCeeccCCccccccC---Cceecccc--CC-CCCCCcccCccccccccCCcccccccH
Q 045234 52 AKTKWICNWHFCGVCRK---ASKFYCFC--CP-SAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~---~~~~~C~~--Cp-~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
+....+| +|++ ...+.|+. |+ ..||..|+.- ..++.+.|+|+.|.
T Consensus 33 ~~e~~yC------iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl---~~~p~g~W~Cp~C~ 83 (91)
T 1weu_A 33 PNEPTYC------LCHQVSYGEMIGCDNPDCSIEWFHFACVGL---TTKPRGKWFCPRCS 83 (91)
T ss_dssp SCCCBCS------TTCCBCCSCCCCCSCSSCSCCCCCSTTTTC---SSCCCSSCCCTTTC
T ss_pred CCCCcEE------ECCCCCCCCEeEecCCCCCCCCEecccCCc---CcCCCCCEECcCcc
Confidence 4455655 4555 35678999 88 6899999973 33456899999995
No 94
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=91.26 E-value=0.16 Score=41.53 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhh---hhhhhhHHHHHHHHhhhcccCCcCCCCeeecch-hhHHHHHH-------HhhhHHHHhcccC
Q 045234 216 LEMQKMLKLHART---LQEQNNKNTMVACRNHTQEALVKAMQLHVTCHW-NMWNLYLR-------NHHLQGLLNTMEF 282 (299)
Q Consensus 216 ~eL~~fl~~~g~~---lsr~~~v~k~lw~YIk~n~LqdP~~Kr~I~CD~-kL~~lF~~-------~f~m~klL~~H~~ 282 (299)
.+|..+|...|.. ++.. +|.-.+-.||-...|.||.+...|.|.. .|-.|||. .-.++++|.+-++
T Consensus 16 ~~LLklLq~~GA~~~vfT~k-eVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nLv 92 (115)
T 2axi_A 16 PLLLKLLKSVGAQKDTYTMK-EVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLV 92 (115)
T ss_dssp HHHHHHHHHTTCCCSCEEHH-HHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHHTTEE
T ss_pred HHHHHHHHHhccccceeech-hheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhcc
Confidence 5788899988765 8888 9999999999999999999999999964 55899998 3345566655444
No 95
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.20 E-value=0.023 Score=44.40 Aligned_cols=52 Identities=25% Similarity=0.575 Sum_probs=38.2
Q ss_pred cccccc---CCceeccccCCCCCCCcccCcccccc-----------ccCCcccccccHHHHHHHHh
Q 045234 62 FCGVCR---KASKFYCFCCPSAVCKTCLYDIQFAL-----------VKENKGFCNSCLELAWLIET 113 (299)
Q Consensus 62 ~C~~C~---~~~~~~C~~Cp~s~c~~CL~~~~~~~-----------v~~~~~~C~~C~~l~~~le~ 113 (299)
.|.+|. ...++.|..|++.||..||....+.. .....|-|..|..|..+|..
T Consensus 17 ~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lLLtE 82 (89)
T 1wil_A 17 MCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTE 82 (89)
T ss_dssp CCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSSSCC
T ss_pred ccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhhcch
Confidence 466776 45689999999999999998742211 14578999999877666544
No 96
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=91.15 E-value=0.075 Score=38.19 Aligned_cols=45 Identities=22% Similarity=0.535 Sum_probs=31.9
Q ss_pred CCCCeeccCCccccccC---Cceecccc--CC-CCCCCcccCccccccccCCcccccccH
Q 045234 52 AKTKWICNWHFCGVCRK---ASKFYCFC--CP-SAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~---~~~~~C~~--Cp-~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
+....+| +|++ +..+.|+. |+ ..||..|+.- ..++.+.|+|+.|.
T Consensus 6 ~~e~~yC------~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl---~~~p~~~w~Cp~C~ 56 (59)
T 3c6w_A 6 SNEPTYC------LCHQVSYGEMIGCDNPDCPIEWFHFACVDL---TTKPKGKWFCPRCV 56 (59)
T ss_dssp --CCEET------TTTEECCSEEEECSCTTCSSCEEETGGGTC---SSCCSSCCCCHHHH
T ss_pred CCCCcEE------ECCCCCCCCeeEeeCCCCCCCCEecccCCc---ccCCCCCEECcCcc
Confidence 4455555 4665 34678999 99 6999999983 33456799999995
No 97
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=90.97 E-value=0.077 Score=53.43 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=28.7
Q ss_pred CCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 23 GGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 23 GGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
+..+|.|| .|...||..|++++.......+.|+||.
T Consensus 55 ~~~mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 55 DFQWIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp TTSEEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CCCEEECC--CCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 34688999 9999999999998764323447899996
No 98
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=90.93 E-value=0.026 Score=48.71 Aligned_cols=81 Identities=20% Similarity=0.444 Sum_probs=50.3
Q ss_pred ccccceeccCC--------ceeeeCCCCCCCcccccccCCCccccCCCCCeeccCCccccccCCc-eeccc--cCCCCCC
Q 045234 14 EIWCFKCKHGG--------ELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWHFCGVCRKAS-KFYCF--CCPSAVC 82 (299)
Q Consensus 14 ed~C~vC~dGG--------eLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H~C~~C~~~~-~~~C~--~Cp~s~c 82 (299)
++.|..|+.-- +.++|. .|-..|+..-...+ ++|. ..+|.+|+.++ ++.|+ .|+.+||
T Consensus 36 e~~Ct~CG~~~~~~~HPlf~v~lC~--~Ck~~y~e~~f~~D-----eDG~----~~yC~wC~~Gg~l~~Cdn~~C~r~FC 104 (159)
T 3a1b_A 36 EDICISCGSLNVTLEHPLFVGGMCQ--NCKNCFLECAYQYD-----DDGY----QSYCTICCGGREVLMCGNNNCCRCFC 104 (159)
T ss_dssp GGSBTTTCCSCCCEECSSBSSEECH--HHHHHHHHHTTCBC-----TTSS----BSSCTTTSCCSEEEECSSTTTCCEEE
T ss_pred cCcccCCCCcCccccCCCccchhhH--HHHHHHhhcccccC-----CCCC----cceeeEecCCCeEEeeCCCCCCCchh
Confidence 78899997521 333454 45444433222222 2222 34677898875 78899 8999999
Q ss_pred CcccCcc----cccc-ccCCcccccccH
Q 045234 83 KTCLYDI----QFAL-VKENKGFCNSCL 105 (299)
Q Consensus 83 ~~CL~~~----~~~~-v~~~~~~C~~C~ 105 (299)
..|+.-. .+.. +..+.|.|--|.
T Consensus 105 ~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 105 VECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp HHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred HHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 9999732 1222 357788888774
No 99
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=90.67 E-value=0.037 Score=46.96 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=35.3
Q ss_pred CCCCeeccCCccccccCC-----ceeccccCCCCCCCcccCccccccccCCcccccccHHHH
Q 045234 52 AKTKWICNWHFCGVCRKA-----SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLELA 108 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~l~ 108 (299)
++..++| +|+++ ..+.|+.|+.-||..|+.-..........|+|+.|....
T Consensus 5 ~~~~~~C------~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC------ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET------TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe------eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 4556777 35543 267899999999999997543332236789999998654
No 100
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=89.99 E-value=0.037 Score=53.81 Aligned_cols=82 Identities=20% Similarity=0.436 Sum_probs=49.9
Q ss_pred cccccceeccCC--------ceeeeCCCCCCCcccccccCCCccccCCCCCeeccCCccccccCCc-eeccc--cCCCCC
Q 045234 13 SEIWCFKCKHGG--------ELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNWHFCGVCRKAS-KFYCF--CCPSAV 81 (299)
Q Consensus 13 ~ed~C~vC~dGG--------eLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~H~C~~C~~~~-~~~C~--~Cp~s~ 81 (299)
=++.|..|+.-. +.++|. .|-..|+..--.. .++.+ ..+|..|+.+. ++.|+ .|+++|
T Consensus 49 ~e~~C~~CG~~~~~~~HPl~~v~lC~--~Ck~~y~~~~f~~------D~DG~---~~yCr~C~~Gg~l~~Cdn~~C~r~F 117 (386)
T 2pv0_B 49 IEDICICCGSLQVHTQHPLFEGGICA--PCKDKFLDALFLY------DDDGY---QSYCSICCSGETLLICGNPDCTRCY 117 (386)
T ss_dssp GGGSBTTTCCSCCCSBCSSBSSBCCH--HHHHHHHTTTTCB------CSSSS---BCSCTTTCCCSSCEECCSTTCCCEE
T ss_pred ccceeCCCCCcCccccCCCcCcchhh--HHHHHHhccCccc------CCCCC---cccceEcCCCCeEEEeCCCCCCcch
Confidence 468899997542 233344 4433343221111 22223 34788898875 78999 999999
Q ss_pred CCcccCccc----cccc-cCCcccccccH
Q 045234 82 CKTCLYDIQ----FALV-KENKGFCNSCL 105 (299)
Q Consensus 82 c~~CL~~~~----~~~v-~~~~~~C~~C~ 105 (299)
|..|+.-.. +..+ ....|.|--|.
T Consensus 118 C~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 118 CFECVDSLVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp CHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred HHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence 999997432 2222 45788887773
No 101
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=89.51 E-value=0.13 Score=37.23 Aligned_cols=46 Identities=20% Similarity=0.483 Sum_probs=32.6
Q ss_pred CCCCeeccCCccccccC---Cceecccc--CC-CCCCCcccCccccccccCCcccccccHH
Q 045234 52 AKTKWICNWHFCGVCRK---ASKFYCFC--CP-SAVCKTCLYDIQFALVKENKGFCNSCLE 106 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~---~~~~~C~~--Cp-~s~c~~CL~~~~~~~v~~~~~~C~~C~~ 106 (299)
++...+| +|++ +..+.|+. || ..||..|+.-. .++.+.|+|+.|..
T Consensus 8 ~~e~~yC------~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~---~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 8 PNEPTYC------LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLT---YKPKGKWYCPKCRG 59 (62)
T ss_dssp --CCEET------TTTEECCSEEEECSCTTCSSCEEETGGGTCS---SCCSSCCCCHHHHT
T ss_pred CCCCcEE------ECCCCCCCCeeeeeCCCCCcccEecccCCcC---cCCCCCEECcCccc
Confidence 4555666 4665 34678999 88 89999999833 33568999999963
No 102
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=89.45 E-value=0.28 Score=38.35 Aligned_cols=48 Identities=25% Similarity=0.562 Sum_probs=33.5
Q ss_pred CCCCeeccCCccccccC---Cceecccc--CC-CCCCCcccCccccccccCCcccccc-cHHHH
Q 045234 52 AKTKWICNWHFCGVCRK---ASKFYCFC--CP-SAVCKTCLYDIQFALVKENKGFCNS-CLELA 108 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~---~~~~~C~~--Cp-~s~c~~CL~~~~~~~v~~~~~~C~~-C~~l~ 108 (299)
++...+| +|+. +..+.|+. || ..||..|+.- ..++.+.|+|+. |.++.
T Consensus 23 ~~~~~yC------iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl---~~~p~~~W~Cp~cC~~~~ 77 (90)
T 2jmi_A 23 NQEEVYC------FCRNVSYGPMVACDNPACPFEWFHYGCVGL---KQAPKGKWYCSKDCKEIA 77 (90)
T ss_dssp -CCSCCS------TTTCCCSSSEECCCSSSCSCSCEETTTSSC---SSCTTSCCCSSHHHHHHH
T ss_pred CCCCcEE------EeCCCCCCCEEEecCCCCccccCcCccCCC---CcCCCCCccCChhhcchh
Confidence 4455666 4554 34678999 55 7899999973 334568999999 97544
No 103
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.05 E-value=0.19 Score=36.02 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=34.2
Q ss_pred CCCeeccCCccccccCC-----ceeccccCCCCCCCcccCccccccccCCcccccccHH
Q 045234 53 KTKWICNWHFCGVCRKA-----SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLE 106 (299)
Q Consensus 53 ~g~W~Cp~H~C~~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~ 106 (299)
++..+|| +|+++ ..+.|+.|+.=||..|+.-..........|+|+.|..
T Consensus 4 ~e~~~C~-----~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCG-----ACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCS-----SSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCC-----CCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 4456665 67664 2567999999999999985433221246899999963
No 104
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=88.69 E-value=0.05 Score=53.68 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=31.0
Q ss_pred eecc----CCceeeeCCCCCCCcccccccCCCccccCCCCCeeccC
Q 045234 19 KCKH----GGELRLCDNTRCLKVYHPECVDKDESFLAAKTKWICNW 60 (299)
Q Consensus 19 vC~d----GGeLv~CD~~~CPkaYH~~Cl~~~~~~~~~~g~W~Cp~ 60 (299)
+|+. +|.+|.|| .|...||..|++.........+.|+||.
T Consensus 9 iC~~~~d~~~~MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~~ 52 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECD--MCQDWFHGSCVGVEEEKAADIDLYHCPN 52 (447)
T ss_dssp TTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTEEECCCHH
T ss_pred eCCCcCCCCCCeEEcC--CCCcccccccCCcCcccccCCCEEECCC
Confidence 4764 68999999 9999999999998754222336899983
No 105
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=86.99 E-value=0.3 Score=38.69 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=25.5
Q ss_pred ceeeeCCCCCCCcccccccCCCccc---cCCCCCeeccC
Q 045234 25 ELRLCDNTRCLKVYHPECVDKDESF---LAAKTKWICNW 60 (299)
Q Consensus 25 eLv~CD~~~CPkaYH~~Cl~~~~~~---~~~~g~W~Cp~ 60 (299)
.|+.|+ .|...||..|+++.... ....+.|.||.
T Consensus 74 ~m~~C~--~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~ 110 (117)
T 4bbq_A 74 KLMECC--ICNEIVHPGCLQMDGEGLLNEELPNCWECPK 110 (117)
T ss_dssp SCEEET--TTCCEECGGGCCSCCCCEECSSSSSEEECTT
T ss_pred ceEEee--ecCCeEECCCCCCCccccccccCCCCeECCC
Confidence 488999 99999999999975321 12345699985
No 106
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=83.86 E-value=0.31 Score=37.61 Aligned_cols=31 Identities=29% Similarity=0.829 Sum_probs=26.4
Q ss_pred cccceecc--CCceeeeCCCCCCCcccccccCC
Q 045234 15 IWCFKCKH--GGELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 15 d~C~vC~d--GGeLv~CD~~~CPkaYH~~Cl~~ 45 (299)
-.|.+|+. .|--|-|..+.|.++||+.|.-.
T Consensus 18 l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 18 LTCYLCKQKGVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHH
T ss_pred CCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHH
Confidence 45999985 38889999899999999999764
No 107
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=82.92 E-value=0.39 Score=38.17 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=32.0
Q ss_pred ccccccCC-----ceeccc-cCCCCCCCcccCcccc--cc---ccCCcccccccHH
Q 045234 62 FCGVCRKA-----SKFYCF-CCPSAVCKTCLYDIQF--AL---VKENKGFCNSCLE 106 (299)
Q Consensus 62 ~C~~C~~~-----~~~~C~-~Cp~s~c~~CL~~~~~--~~---v~~~~~~C~~C~~ 106 (299)
.|.+|+++ ..+.|+ .|..=||..|+.-... .. .+...|+|+.|..
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 45578876 245687 9999999999984431 11 1447899999975
No 108
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=81.46 E-value=0.44 Score=37.48 Aligned_cols=33 Identities=21% Similarity=0.537 Sum_probs=25.2
Q ss_pred eeeeCCCCCCCcccccccCCCc------cccCCCCCeeccC
Q 045234 26 LRLCDNTRCLKVYHPECVDKDE------SFLAAKTKWICNW 60 (299)
Q Consensus 26 Lv~CD~~~CPkaYH~~Cl~~~~------~~~~~~g~W~Cp~ 60 (299)
+|.|| .|-..||..|++++. ..+.+...|.||.
T Consensus 2 mi~c~--~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~ 40 (140)
T 2ku7_A 2 MMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN 40 (140)
T ss_dssp CCCCS--CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSC
T ss_pred ccccc--cCCCccCCcccccCHHHHHHHhhccccceeeCcc
Confidence 67899 999999999999864 2222355788885
No 109
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.04 E-value=0.59 Score=34.57 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=34.9
Q ss_pred CCCCeeccCCccccccCCceeccccC--C-CCCCCcccCccccccccCCcccccccHHHH
Q 045234 52 AKTKWICNWHFCGVCRKASKFYCFCC--P-SAVCKTCLYDIQFALVKENKGFCNSCLELA 108 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~~~~~C~~C--p-~s~c~~CL~~~~~~~v~~~~~~C~~C~~l~ 108 (299)
++...+|. |.....+..+.|+.| | .-||..|+.-. .++...|+|+.|....
T Consensus 3 ~~~~~yC~---C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~---~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYCI---CNQVSYGEMVGCDNQDCPIEWFHYGCVGLT---EAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCST---TSCCCCSSEECCSCTTCSCCCEEHHHHTCS---SCCSSCCCCHHHHHHH
T ss_pred CCCCeEEE---cCCCCCCCEeEeCCCCCCccCCcccccccC---cCCCCCEECCCCCccc
Confidence 45567773 433333456789995 3 78999999843 2357899999997654
No 110
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=78.23 E-value=0.67 Score=32.64 Aligned_cols=42 Identities=29% Similarity=0.451 Sum_probs=27.7
Q ss_pred ccccccccccccccccceecc---CCceeeeCCCCCCCcccccccCC
Q 045234 2 ARSKRLKKEEISEIWCFKCKH---GGELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 2 ~~~~krk~~~~~ed~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~ 45 (299)
+.......+...+..|.||.+ .++-+..- .|.-+||..|+..
T Consensus 2 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~--~C~H~fc~~Ci~~ 46 (69)
T 2kiz_A 2 KQDGEEGTEEDTEEKCTICLSILEEGEDVRRL--PCMHLFHQVCVDQ 46 (69)
T ss_dssp CCCSTTCCSTTCCCSBTTTTBCCCSSSCEEEC--TTSCEEEHHHHHH
T ss_pred CCcccCcCcCCCCCCCeeCCccccCCCcEEEe--CCCCHHHHHHHHH
Confidence 333333445566778999965 34444444 6888999999975
No 111
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.68 E-value=0.76 Score=34.33 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=30.1
Q ss_pred cccCC-----ceeccccCCCCCCCcccCccccccccCCcccccccHH
Q 045234 65 VCRKA-----SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLE 106 (299)
Q Consensus 65 ~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~ 106 (299)
+|+++ ..+.|+.|..=||..|+.-..........|+|+.|..
T Consensus 16 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 62 (79)
T 1wep_A 16 LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62 (79)
T ss_dssp TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccc
Confidence 46654 2467999999999999975433222346899999963
No 112
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.12 E-value=0.94 Score=34.06 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=23.4
Q ss_pred cccccccccceeccC----Cceee-eCCCCCCCcccccccCC
Q 045234 9 KEEISEIWCFKCKHG----GELRL-CDNTRCLKVYHPECVDK 45 (299)
Q Consensus 9 ~~~~~ed~C~vC~dG----GeLv~-CD~~~CPkaYH~~Cl~~ 45 (299)
.....++.|.||.+. +.|+. |.=++.-..||..||..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~ 51 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQ 51 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHH
T ss_pred CCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHH
Confidence 445567889999853 34442 32002238999999975
No 113
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=72.44 E-value=2.8 Score=36.60 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=20.3
Q ss_pred cccceeccCCc----eeeeCCCCCCCcccccccCCCc
Q 045234 15 IWCFKCKHGGE----LRLCDNTRCLKVYHPECVDKDE 47 (299)
Q Consensus 15 d~C~vC~dGGe----Lv~CD~~~CPkaYH~~Cl~~~~ 47 (299)
.+|. |+..|+ .+.|+ .|-+.||.+|+....
T Consensus 6 ~yCY-CG~~~~~~~~mLqC~--~C~qWFH~~Cl~~~~ 39 (177)
T 3rsn_A 6 GSVD-EENGRQLGEVELQCG--ICTKWFTADTFGIDT 39 (177)
T ss_dssp ------CTTCCTTSCEEECT--TTCCEEEGGGGTCCC
T ss_pred eEEE-cCCCCCCCceeEeec--cccceecHHHhcccc
Confidence 3666 777664 67788 899999999998543
No 114
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=71.11 E-value=1.6 Score=31.93 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=29.2
Q ss_pred cccCC----ceeccccCCCCCCCcccCccccccccCCcccccccH
Q 045234 65 VCRKA----SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 65 ~C~~~----~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
+|+++ ..+.|+.|..=||..|+.-..-. + ...|+|+.|.
T Consensus 23 iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~-~-~~~~~C~~C~ 65 (68)
T 3o70_A 23 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSN-V-PEVFVCQKCR 65 (68)
T ss_dssp TTCCCCTTCCEEECTTTCCEEETTTTTCCTTS-C-CSSCCCHHHH
T ss_pred ECCCcCCCCCEEECCCCCccccccccCcCccc-C-CCcEECCCCC
Confidence 56664 25789999999999999854332 2 3689999996
No 115
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.78 E-value=1.5 Score=32.14 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=29.9
Q ss_pred cccCC-----ceeccccCCCCCCCcccCccccccccCCcccccccHH
Q 045234 65 VCRKA-----SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLE 106 (299)
Q Consensus 65 ~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~ 106 (299)
+|+.+ ..+.|+.|..=||..|+.-..... ....|+|+.|..
T Consensus 20 ~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~-~~~~~~C~~C~~ 65 (72)
T 1wee_A 20 KCGTKDDDGERMLACDGCGVWHHTRCIGINNADA-LPSKFLCFRCIE 65 (72)
T ss_dssp TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSC-CCSCCCCHHHHH
T ss_pred eCCCccCCCCcEEECCCCCCccCCeeeccCcccc-CCCcEECCCccC
Confidence 37654 256799999999999998553322 246899999964
No 116
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=70.30 E-value=2 Score=29.62 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=29.6
Q ss_pred ccccccCCc-----eeccc-cCCCCCCCcccCccccccccCCcccccccH
Q 045234 62 FCGVCRKAS-----KFYCF-CCPSAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 62 ~C~~C~~~~-----~~~C~-~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
.|.+|+++. .+.|+ .|+.=||..|+.-..... ....++|+.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~-~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMA-ENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHH-HHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCcccc-CCCCEECCCCC
Confidence 356666652 46799 899999999997443322 23789999884
No 117
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=64.69 E-value=0.68 Score=33.81 Aligned_cols=43 Identities=21% Similarity=0.571 Sum_probs=30.5
Q ss_pred cccccCC-----ceeccc-cCCCCCCCcccCcccc--cc---ccCCcccccccH
Q 045234 63 CGVCRKA-----SKFYCF-CCPSAVCKTCLYDIQF--AL---VKENKGFCNSCL 105 (299)
Q Consensus 63 C~~C~~~-----~~~~C~-~Cp~s~c~~CL~~~~~--~~---v~~~~~~C~~C~ 105 (299)
|.+|+++ ....|+ .|..=||..|+.-..- .. .+...|+|+.|.
T Consensus 11 C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 11 CGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3478875 246799 9999999999974421 11 144589999986
No 118
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.36 E-value=1.4 Score=32.53 Aligned_cols=42 Identities=17% Similarity=0.357 Sum_probs=30.2
Q ss_pred cccCC----ceeccccCCCCCCCcccCcccccc--c--cCCcccccccHH
Q 045234 65 VCRKA----SKFYCFCCPSAVCKTCLYDIQFAL--V--KENKGFCNSCLE 106 (299)
Q Consensus 65 ~C~~~----~~~~C~~Cp~s~c~~CL~~~~~~~--v--~~~~~~C~~C~~ 106 (299)
+|++. ..+.|+.|..=||..|+.-..... + ....|+|+.|..
T Consensus 20 ~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 20 ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 57765 357799999999999997442211 1 356899999964
No 119
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=62.92 E-value=4.8 Score=29.48 Aligned_cols=57 Identities=26% Similarity=0.502 Sum_probs=37.5
Q ss_pred CeeccCCccccccCC-----ceeccccCCCCCCCcccCcccccc-c--cCCcccccccHHHHHHHH
Q 045234 55 KWICNWHFCGVCRKA-----SKFYCFCCPSAVCKTCLYDIQFAL-V--KENKGFCNSCLELAWLIE 112 (299)
Q Consensus 55 ~W~Cp~H~C~~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~~-v--~~~~~~C~~C~~l~~~le 112 (299)
.|. |...|..|+.. ...+|..|...||..|........ . ....-.|..|......|.
T Consensus 7 ~W~-~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~i~ 71 (73)
T 1vfy_A 7 DWI-DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEFIV 71 (73)
T ss_dssp CCC-CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHHHH
T ss_pred cCc-cCCcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHHHHh
Confidence 454 45678899985 247899999999999987442211 1 112357888877655543
No 120
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=62.40 E-value=5.1 Score=40.37 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=26.2
Q ss_pred eccccCCCCCCCcccCccccccccCCcccccccHHH
Q 045234 72 FYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLEL 107 (299)
Q Consensus 72 ~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~l 107 (299)
..|+.|..=||..|+.-.....-....++|+.|...
T Consensus 59 I~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 59 IGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp EECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred EECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 358888899999999844333223468999999864
No 121
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.19 E-value=1.7 Score=32.07 Aligned_cols=33 Identities=15% Similarity=0.418 Sum_probs=21.9
Q ss_pred cccccccceeccCC--------------c-eeeeCCCCCCCcccccccCC
Q 045234 11 EISEIWCFKCKHGG--------------E-LRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 11 ~~~ed~C~vC~dGG--------------e-Lv~CD~~~CPkaYH~~Cl~~ 45 (299)
+..++.|.||.+.- + ++.-- .|.-+||..|+..
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~--~C~H~FH~~Ci~~ 59 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWG--ECNHSFHNCCMSL 59 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE--TTSCEEEHHHHHH
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeC--CCCCccChHHHHH
Confidence 34677788887632 2 22222 4888999999975
No 122
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.71 E-value=2.1 Score=30.63 Aligned_cols=33 Identities=27% Similarity=0.582 Sum_probs=24.3
Q ss_pred cccccccceecc---CCceeeeCCCCCCCcccccccCC
Q 045234 11 EISEIWCFKCKH---GGELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 11 ~~~ed~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~ 45 (299)
...+..|.||.+ .++.+..- .|--+||..|+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~ 55 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVL--PCNHEFHAKCVDK 55 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEE--TTTEEEETTHHHH
T ss_pred cCCCCCCeECCcccCCCCeEEEE--CCCCHhHHHHHHH
Confidence 345677999984 45555555 5888999999975
No 123
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=54.39 E-value=4.8 Score=26.65 Aligned_cols=32 Identities=38% Similarity=0.686 Sum_probs=22.0
Q ss_pred ccccccceeccC---Cc-eeeeCCCCCCCcccccccCC
Q 045234 12 ISEIWCFKCKHG---GE-LRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 12 ~~ed~C~vC~dG---Ge-Lv~CD~~~CPkaYH~~Cl~~ 45 (299)
+.+..|.+|.+. |+ .+.-. .|.-+||..|+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~ 38 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLP--RCGHGFHAECVDM 38 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECS--SSCCEECTTHHHH
T ss_pred CCCCcCccCCccccCCCceEECC--CCCCcccHHHHHH
Confidence 456679999864 22 33332 4888999999975
No 124
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=53.98 E-value=2.9 Score=30.78 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=27.9
Q ss_pred eeccccCCCCCCCcccCccccccccCCcccccccHHH
Q 045234 71 KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLEL 107 (299)
Q Consensus 71 ~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~l 107 (299)
.+.|+.|..=||..|+.-..........|+|+.|...
T Consensus 25 MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 25 MIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 5679999999999999755333223468999999753
No 125
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=53.13 E-value=1.1 Score=31.95 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=22.0
Q ss_pred cccccccceeccCC--cee-eeCCCCCCCcccccccCC
Q 045234 11 EISEIWCFKCKHGG--ELR-LCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 11 ~~~ed~C~vC~dGG--eLv-~CD~~~CPkaYH~~Cl~~ 45 (299)
++.++.|.||.+++ +|+ -|.=++.-+.+|..||..
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~ 40 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLST 40 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHH
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHH
Confidence 45677899998643 332 232113335999999985
No 126
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=52.72 E-value=5 Score=29.78 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=33.7
Q ss_pred CCCCeeccCCccccccCC----ceeccc--cCCCCCCCcccCcccccc----ccCCcccccccHH
Q 045234 52 AKTKWICNWHFCGVCRKA----SKFYCF--CCPSAVCKTCLYDIQFAL----VKENKGFCNSCLE 106 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~----~~~~C~--~Cp~s~c~~CL~~~~~~~----v~~~~~~C~~C~~ 106 (299)
+....+| +|+.. ..+.|+ .|+.=||..|+.-..... .....|+|+.|..
T Consensus 13 ~~~~~~C------iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 13 PEIKVRC------VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCCCC------SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCCCEEe------ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 4556666 47765 257799 999999999997432221 1236899999964
No 127
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=49.00 E-value=9.3 Score=30.07 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=30.1
Q ss_pred ccHHHHHHHHhhccCCCCCC--CCCCCCcccccchhhHHhhhccccCC
Q 045234 103 SCLELAWLIETKKDVNYDGF--DRSDAGERNRFYFKGYWQKIKEKESL 148 (299)
Q Consensus 103 ~C~~l~~~le~~~~~~~~~~--df~d~~~~~e~lfk~yw~~ik~k~~l 148 (299)
.|.++...|.+..+.+.... .|.. . +..-.+.+|+++|+.+++|
T Consensus 9 ~c~~il~~l~~~~d~~g~~~s~~F~~-p-~~~~~~pdY~~iI~~PmdL 54 (116)
T 3iu5_A 9 VCHELYNTIRDYKDEQGRLLCELFIR-A-PKRRNQPDYYEVVSQPIDL 54 (116)
T ss_dssp HHHHHHHHHHHCBCTTCCBGGGGGSS-C-CCGGGCHHHHHHCSSCCCH
T ss_pred HHHHHHHHHHHhhccCCCeeeHHhcC-C-CCcccCCCHHHHhCCCCCH
Confidence 57888888888755422112 6766 3 2234578999999999977
No 128
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.06 E-value=8.5 Score=27.38 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=22.0
Q ss_pred cccccccceeccC---CceeeeCCCCCCCcccccccCC
Q 045234 11 EISEIWCFKCKHG---GELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 11 ~~~ed~C~vC~dG---GeLv~CD~~~CPkaYH~~Cl~~ 45 (299)
...+..|.||.+. ++.+.-- .|--+||..|+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~--~C~H~fc~~Ci~~ 47 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQL--PCNHLFHDSCIVP 47 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEEC--TTSCEEETTTTHH
T ss_pred CCCCCCCeeCCccccCCCCEEEe--CCCCeecHHHHHH
Confidence 4456789999653 3333222 4778899999974
No 129
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=46.83 E-value=3.9 Score=40.57 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=31.4
Q ss_pred cccCC-----ceeccccCCCCCCCcccCccccccccCCcccccccHHHH
Q 045234 65 VCRKA-----SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLELA 108 (299)
Q Consensus 65 ~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~l~ 108 (299)
+|+.+ ..+.|+.|..=||..|+.-..........|+|+.|....
T Consensus 41 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 41 VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 46654 257799999999999997543332234689999998643
No 130
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=45.79 E-value=5.6 Score=31.26 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=21.5
Q ss_pred ccccccceeccCCc------------------eeeeCCCCCCCcccccccCC
Q 045234 12 ISEIWCFKCKHGGE------------------LRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 12 ~~ed~C~vC~dGGe------------------Lv~CD~~~CPkaYH~~Cl~~ 45 (299)
..++.|.||.+.=+ .+.-- .|.-+||..|+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~--~C~H~FH~~Ci~~ 84 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG--VCNHAFHFHCISR 84 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEE--TTSCEEEHHHHHH
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeec--ccCcEECHHHHHH
Confidence 46788999975321 12222 5888999999975
No 131
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=45.77 E-value=20 Score=29.63 Aligned_cols=52 Identities=15% Similarity=0.339 Sum_probs=30.1
Q ss_pred ccccceecc---CCceeeeCCCCCCCcccccccCC-------CccccCCCCCeeccCC-------ccccccCC
Q 045234 14 EIWCFKCKH---GGELRLCDNTRCLKVYHPECVDK-------DESFLAAKTKWICNWH-------FCGVCRKA 69 (299)
Q Consensus 14 ed~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~-------~~~~~~~~g~W~Cp~H-------~C~~C~~~ 69 (299)
...|..|+. ++.++.-. .+.||+.|..= ....+..+|.-+|..| .|..|+..
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~ 74 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKAL----DRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLG 74 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECS----SCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCB
T ss_pred CCccccCCCccCCcEEEEEC----CcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccc
Confidence 356888876 23344333 57889877652 1111234677788643 68888764
No 132
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.85 E-value=23 Score=25.04 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=33.6
Q ss_pred cccchhhhH-HHHHHHHHHhhhhh--hhhhhHHHHHHHHhhhcccC
Q 045234 207 SYYMRVRWY-LEMQKMLKLHARTL--QEQNNKNTMVACRNHTQEAL 249 (299)
Q Consensus 207 ~~~~~~gw~-~eL~~fl~~~g~~l--sr~~~v~k~lw~YIk~n~Lq 249 (299)
.-| ..|+ .||+.=|+.+|..+ +|- +.+.+|-.|.++-+.-
T Consensus 6 ~~y--gaW~~~ELQaKLaE~GAPi~g~RE-ElvdRLk~Y~~QtGi~ 48 (58)
T 2do5_A 6 SGY--GAWAAQELQAKLAEIGAPIQGNRE-ELVERLQSYTRQTGIV 48 (58)
T ss_dssp CCS--CSSCHHHHHHHHHHHTCCCCSCHH-HHHHHHHHHHHHHCCC
T ss_pred CCc--ccccCHHHHHHHHHhCCcccccHH-HHHHHHHHHhhcccee
Confidence 346 7899 99999999999884 499 9999999998876654
No 133
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=44.84 E-value=4.1 Score=30.48 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=23.0
Q ss_pred ccccccceeccC---CceeeeCCCCCCCcccccccCC
Q 045234 12 ISEIWCFKCKHG---GELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 12 ~~ed~C~vC~dG---GeLv~CD~~~CPkaYH~~Cl~~ 45 (299)
..+..|.||.+. |+.+.-- .|--+||..|+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~Fh~~Ci~~ 72 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATEL--PCHHYFHKPCVSI 72 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEE--TTTEEEEHHHHHH
T ss_pred CCCCCCcccChhhcCCCcEEec--CCCChHHHHHHHH
Confidence 456679999753 4444444 5889999999975
No 134
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=44.46 E-value=8.5 Score=31.30 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=28.8
Q ss_pred ccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 103 SCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 103 ~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
.|.++...|.+..... .|.+ ++...+.+|+++|+.+|+|+
T Consensus 24 ~c~~il~~L~~~~~s~----~F~~---Pv~~~~pdY~~iIk~PmDL~ 63 (135)
T 2yyn_A 24 KCERLLLFLYCHEMSL----AFQD---PVPLTVPDYYKIIKNPMDLS 63 (135)
T ss_dssp HHHHHHHHHHTSGGGG----GGSS---CCCTTSTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHhCccch----hhcC---CCcccCCCHHHHcCCCCCHH
Confidence 5888887777644333 6876 33346899999999999874
No 135
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=44.27 E-value=6.2 Score=26.02 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=23.3
Q ss_pred ccccccceeccC----CceeeeCCCCCCCcccccccCC
Q 045234 12 ISEIWCFKCKHG----GELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 12 ~~ed~C~vC~dG----GeLv~CD~~~CPkaYH~~Cl~~ 45 (299)
..++.|.||.+. ++.+.-- .|.-+||..|+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~--~CgH~fc~~Ci~~ 38 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVL--PCGHLLHRTCYEE 38 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEEC--TTSCEEETTHHHH
T ss_pred CCCCcCcccChhhcCCCcCeEec--CCCCcccHHHHHH
Confidence 346779999863 3445555 6888999999975
No 136
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=42.28 E-value=8.2 Score=29.46 Aligned_cols=36 Identities=22% Similarity=0.600 Sum_probs=27.7
Q ss_pred CCCCeeccCCccccccC---Cceecccc--CCCCCCCcccCccc
Q 045234 52 AKTKWICNWHFCGVCRK---ASKFYCFC--CPSAVCKTCLYDIQ 90 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~---~~~~~C~~--Cp~s~c~~CL~~~~ 90 (299)
|..+|. -.|.+|+. ++-+.|.. |..+||..|-..+.
T Consensus 12 p~~R~~---l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aG 52 (87)
T 2lq6_A 12 PPARWK---LTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAG 52 (87)
T ss_dssp CCCCCC---CCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHT
T ss_pred ChHHhc---CCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCC
Confidence 667784 37999974 46788866 99999999977553
No 137
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=41.99 E-value=8.4 Score=33.40 Aligned_cols=45 Identities=22% Similarity=0.515 Sum_probs=31.3
Q ss_pred CccccccCC--------ceeccccCCCCCCCcccCccc--cccc---c-CCcccccccH
Q 045234 61 HFCGVCRKA--------SKFYCFCCPSAVCKTCLYDIQ--FALV---K-ENKGFCNSCL 105 (299)
Q Consensus 61 H~C~~C~~~--------~~~~C~~Cp~s~c~~CL~~~~--~~~v---~-~~~~~C~~C~ 105 (299)
.+|++|+++ ..+.|+.|..=||..|..-.. ...+ + ...++|+.|.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~ 61 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT 61 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCC
Confidence 357788775 156899999999999997442 1111 1 2378999995
No 138
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=41.29 E-value=14 Score=29.44 Aligned_cols=46 Identities=13% Similarity=0.025 Sum_probs=30.5
Q ss_pred cccHHHHHHHHhhccCCCCCC--CCCCCCcccccchhhHHhhhccccCCC
Q 045234 102 NSCLELAWLIETKKDVNYDGF--DRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 102 ~~C~~l~~~le~~~~~~~~~~--df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
..|.++...|.+..+.+.... .|.. . +..-.+.+|+++|+.+|+|+
T Consensus 18 ~~~~~il~~l~~~~d~~g~~~s~~F~~-p-v~~~~~pdY~~iI~~PmdL~ 65 (124)
T 3mb4_A 18 QKLNEVYEAVKNYTDKRGRRLSAIFLR-L-PSRSELPDYYLTIKKPMDME 65 (124)
T ss_dssp HHHHHHHHHHHHCBCTTSCBGGGGGSC-C-CCTTTCHHHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHhHhcccCCcccHHhhc-C-CCccccCCHHHHcCCCCCHH
Confidence 367888888887655422112 6766 2 22345789999999999773
No 139
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.81 E-value=6.1 Score=27.88 Aligned_cols=34 Identities=32% Similarity=0.654 Sum_probs=23.5
Q ss_pred cccccccccceeccC---C-ceeeeCCCCCCCcccccccCC
Q 045234 9 KEEISEIWCFKCKHG---G-ELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 9 ~~~~~ed~C~vC~dG---G-eLv~CD~~~CPkaYH~~Cl~~ 45 (299)
++...++.|.||.+. + .++.. .|--+||..|+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~---~C~H~f~~~Ci~~ 47 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGIC---PCKHAFHRKCLIK 47 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEE---TTTEEEEHHHHHH
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEc---CCCCEecHHHHHH
Confidence 344567789999864 2 33333 4888999999975
No 140
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=38.34 E-value=13 Score=29.07 Aligned_cols=86 Identities=24% Similarity=0.514 Sum_probs=47.4
Q ss_pred cccceecc---CCceeeeCCCCCCCcccccccCCC--------ccccCCCCCeeccC-------CccccccCCc------
Q 045234 15 IWCFKCKH---GGELRLCDNTRCLKVYHPECVDKD--------ESFLAAKTKWICNW-------HFCGVCRKAS------ 70 (299)
Q Consensus 15 d~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~~--------~~~~~~~g~W~Cp~-------H~C~~C~~~~------ 70 (299)
..|..|+. .|+++.-. .+.||+.|..=. ..+...++.-+|.. ..|..|+++-
T Consensus 4 ~~C~~C~~~I~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~ 79 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAE----NQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQR 79 (126)
T ss_dssp CBBTTTSSBCCSSCEEEET----TEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCE
T ss_pred CCCccCCCEeCCceEEeeC----CCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceE
Confidence 35777775 35555443 678888776521 11223456677763 3688888741
Q ss_pred --------e--eccccCCCCCCCcccCccccccccCCccccc-ccHHH
Q 045234 71 --------K--FYCFCCPSAVCKTCLYDIQFALVKENKGFCN-SCLEL 107 (299)
Q Consensus 71 --------~--~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~-~C~~l 107 (299)
+ ..|..|.. |..-|.+..|.. .++..+|. .|.++
T Consensus 80 ~~a~~~~~H~~~~CF~C~~--C~~~l~~~~f~~-~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 80 VTYNNFSWHASTECFLCSC--CSKCLIGQKFMP-VEGMVFCSVECKKR 124 (126)
T ss_dssp EEETTEEEESSTTTSBCTT--TCCBCTTSEEEE-ETTEEESSHHHHHS
T ss_pred EECCCCEeeCCCCCcCcCC--CCCccCCCeeEe-ECCEEcchHHhhhh
Confidence 1 23444432 333344444432 56778887 67553
No 141
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=38.24 E-value=17 Score=30.48 Aligned_cols=52 Identities=15% Similarity=0.344 Sum_probs=30.2
Q ss_pred ccccceecc---CCceeeeCCCCCCCcccccccCCC-------ccccCCCCCeeccCC-------ccccccCC
Q 045234 14 EIWCFKCKH---GGELRLCDNTRCLKVYHPECVDKD-------ESFLAAKTKWICNWH-------FCGVCRKA 69 (299)
Q Consensus 14 ed~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~~-------~~~~~~~g~W~Cp~H-------~C~~C~~~ 69 (299)
...|..|+. +++++.-. .+.||+.|..=. ...+..+|.-+|..| .|..|+.+
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~ 128 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKAL----DRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLG 128 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEET----TEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCC
T ss_pred CCcCccCCCCccCceeEEec----CCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCc
Confidence 457888876 23344343 578888776521 111224667777643 68888764
No 142
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.85 E-value=17 Score=28.85 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=30.0
Q ss_pred cccHHHHHHHHhhccCCCCCC--CCCCCCcccccchhhHHhhhccccCCC
Q 045234 102 NSCLELAWLIETKKDVNYDGF--DRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 102 ~~C~~l~~~le~~~~~~~~~~--df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
..|..+...|.+..+....-. .|.. .-+ .-.+.+|+++||.+|+|+
T Consensus 16 ~~~~~il~~l~~~~d~~g~~~s~~F~~-pv~-~~~~pdY~~iIk~PmdL~ 63 (123)
T 2dat_A 16 KQMNAIIDTVINYKDSSGRQLSEVFIQ-LPS-RKELPEYYELIRKPVDFK 63 (123)
T ss_dssp HHHHHHHHHHHHCBCSSSCBSGGGGTS-CCC-TTTSCHHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHhhhcccCCeeeHHhcC-CCC-cccCCCHHHHcCCCCCHH
Confidence 358888888877654321112 6766 222 234789999999999873
No 143
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.97 E-value=12 Score=27.78 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=23.5
Q ss_pred ccccccceeccCC-ceeeeCCCCCCCcccccccCC
Q 045234 12 ISEIWCFKCKHGG-ELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 12 ~~ed~C~vC~dGG-eLv~CD~~~CPkaYH~~Cl~~ 45 (299)
+..+.|.||.+-- .-+.|. .|...||..|+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAK 45 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHH
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHH
Confidence 3456799998632 224577 7999999999985
No 144
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=36.11 E-value=20 Score=28.98 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=29.9
Q ss_pred ccHHHHHHHHhhccCCCCCC--CCCCCCcccccchhhHHhhhccccCCC
Q 045234 103 SCLELAWLIETKKDVNYDGF--DRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 103 ~C~~l~~~le~~~~~~~~~~--df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
.|..+...|.+..+...... .|.. .- -.-.+.+|+++||.+|+|+
T Consensus 21 ~~~~l~~~l~~~~d~~g~~~s~~F~~-pv-~~~~~PdY~~iIk~PMdL~ 67 (130)
T 3k2j_A 21 QSMQLYDTVRSCRNNQGQLIAEPFYH-LP-SKKKYPDYYQQIKMPISLQ 67 (130)
T ss_dssp HHHHHHHHHHTCBCSSSCBTTGGGSS-CC-CTTTCHHHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHHhcccCCCccHhhcC-CC-ChhhCccHHHHcCCCCCHH
Confidence 57788888887665432212 6765 22 2345789999999999873
No 145
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=35.97 E-value=18 Score=36.33 Aligned_cols=73 Identities=25% Similarity=0.467 Sum_probs=25.2
Q ss_pred ccccceeccC--C---ceeeeCCCCCCCcccccccCCCccc-----c-------CCCCCeec----cCCccccccCC---
Q 045234 14 EIWCFKCKHG--G---ELRLCDNTRCLKVYHPECVDKDESF-----L-------AAKTKWIC----NWHFCGVCRKA--- 69 (299)
Q Consensus 14 ed~C~vC~dG--G---eLv~CD~~~CPkaYH~~Cl~~~~~~-----~-------~~~g~W~C----p~H~C~~C~~~--- 69 (299)
-.+|..|++- | +=+.|. .|--+.|..|....... . .....|.= ...+|..|+..
T Consensus 48 p~~C~~C~~~i~g~~~qg~~C~--~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~~~l~g 125 (674)
T 3pfq_A 48 PTFCSHCTDFIWGFGKQGFQCQ--VCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYG 125 (674)
T ss_dssp --------------------------------------------------------CCCCCEECCSSCCCCSSSCSCCBB
T ss_pred CCccccccccccccCCceeECC--CCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCccccccch
Confidence 3579999762 3 556798 89999999998642110 0 01123331 12489999774
Q ss_pred ---ceeccccCCCCCCCcccCc
Q 045234 70 ---SKFYCFCCPSAVCKTCLYD 88 (299)
Q Consensus 70 ---~~~~C~~Cp~s~c~~CL~~ 88 (299)
.-++|..|...+|..|...
T Consensus 126 ~~~qg~~C~~C~~~~H~~C~~~ 147 (674)
T 3pfq_A 126 LIHQGMKCDTCMMNVHKRCVMN 147 (674)
T ss_dssp SSSCEECCSSSCCCBCSSTTSS
T ss_pred hhcCccccccCCcchhhhhhhc
Confidence 3589999999999999863
No 146
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=35.79 E-value=20 Score=28.54 Aligned_cols=45 Identities=18% Similarity=0.092 Sum_probs=27.8
Q ss_pred ccHHHHHHHHhhccCCCCCC--CCCCCCcccccchhhHHhhhccccCCC
Q 045234 103 SCLELAWLIETKKDVNYDGF--DRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 103 ~C~~l~~~le~~~~~~~~~~--df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
.|..+...|.+..+...... .|.. .-+ .-.+.+|+++|+.+++|+
T Consensus 13 ~~~~i~~~l~~~~d~~g~~~s~~F~~-pv~-~~~~pdY~~iIk~PmdL~ 59 (126)
T 3mqm_A 13 IFKEICDGIISYKDSSRQALAAPLLN-LPP-KKKNADYYEKISDPLDLI 59 (126)
T ss_dssp HHHHHHHHHHHCBCTTCCBTTGGGSS-CCC-GGGCTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHHhCcCCCChhHHhcC-CCC-cccCCCHHHHcCCCCCHH
Confidence 45666777776554321111 6765 222 235789999999999873
No 147
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=35.69 E-value=16 Score=22.84 Aligned_cols=23 Identities=30% Similarity=0.904 Sum_probs=14.2
Q ss_pred CCCCeeccCCccccccCC---ceeccccCCC
Q 045234 52 AKTKWICNWHFCGVCRKA---SKFYCFCCPS 79 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~---~~~~C~~Cp~ 79 (299)
..|+|.||. |+-. ....|..|..
T Consensus 2 k~gDW~C~~-----C~~~Nfa~r~~C~~C~~ 27 (32)
T 2lk0_A 2 KFEDWLCNK-----CCLNNFRKRLKCFRCGA 27 (32)
T ss_dssp CCSEEECTT-----TCCEEETTCCBCTTTCC
T ss_pred CCCCCCcCc-----CcCCcChhcceecCCCC
Confidence 358999994 5432 3456666644
No 148
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=35.32 E-value=24 Score=23.81 Aligned_cols=28 Identities=29% Similarity=0.597 Sum_probs=16.7
Q ss_pred CCCCeeccCCccccccCCceeccccCCC
Q 045234 52 AKTKWICNWHFCGVCRKASKFYCFCCPS 79 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~~~~~C~~Cp~ 79 (299)
..|+|.||.-.|..=.-.....|..|..
T Consensus 11 ~~GDW~C~~~~C~~~Nfa~R~~C~~C~~ 38 (45)
T 1n0z_A 11 SDGDWICPDKKCGNVNFARRTSCDRCGR 38 (45)
T ss_dssp CSSSCBCSSTTTCCBCCSSCSBCSSSCC
T ss_pred CCCCcCCCCCCCCCEEccccccccccCC
Confidence 5799999953333333334556666654
No 149
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=34.49 E-value=22 Score=28.10 Aligned_cols=45 Identities=16% Similarity=0.010 Sum_probs=28.5
Q ss_pred ccHHHHHHHHhhccCCCCC-C-CCCCCCcccccchhhHHhhhccccCCC
Q 045234 103 SCLELAWLIETKKDVNYDG-F-DRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 103 ~C~~l~~~le~~~~~~~~~-~-df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
.|..+...|.+..+.+..- . .|.. . +-.-.+.+||++||.+|+|+
T Consensus 12 ~~~~ll~~l~~~~d~~g~~~s~~F~~-~-~~~~~~pdY~~iIk~PmdL~ 58 (120)
T 3ljw_A 12 ILEQLLEAIVVATNPSGRLISELFQK-L-PSKVQYPDYYAIIKEPIDLK 58 (120)
T ss_dssp HHHHHHHHHHHCBCTTSCBTTGGGSS-C-CCTTTCHHHHHHCSSCCCHH
T ss_pred HHHHHHHHHHhccCcCCCcccHHhcC-C-CCcccCCChHHHcCCCCCHH
Confidence 4667777777765432111 1 6765 2 22345789999999999773
No 150
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=34.30 E-value=27 Score=21.89 Aligned_cols=23 Identities=22% Similarity=0.748 Sum_probs=14.0
Q ss_pred CCCCeeccCCccccccCC---ceeccccCCC
Q 045234 52 AKTKWICNWHFCGVCRKA---SKFYCFCCPS 79 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~---~~~~C~~Cp~ 79 (299)
..|+|.||. |+-. ....|..|..
T Consensus 3 ~~gDW~C~~-----C~~~Nfa~R~~C~~C~~ 28 (33)
T 2k1p_A 3 SANDWQCKT-----CSNVNWARRSECNMCNT 28 (33)
T ss_dssp SSSSCBCSS-----SCCBCCTTCSBCSSSCC
T ss_pred CCCCcccCC-----CCCccccccccccccCC
Confidence 468999993 5432 3455666643
No 151
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=34.07 E-value=17 Score=28.47 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=27.3
Q ss_pred ccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 103 SCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 103 ~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
.|..+...|.+..... .|.. .-+ .-.+.+|+++|+.+|+|+
T Consensus 17 ~c~~il~~l~~~~~s~----~F~~-pv~-~~~~pdY~~~I~~Pmdl~ 57 (117)
T 3g0l_A 17 LCSMILTEMETHEDAW----PFLL-PVN-LKLVPGYKKVIKKPMDFS 57 (117)
T ss_dssp HHHHHHHHHHTSTTCG----GGSS-CCC-TTTSTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHhCCCch----hhcC-cCC-hhhcCChHHHcCCCCCHH
Confidence 5777777777654332 5765 222 123689999999999873
No 152
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=33.26 E-value=10 Score=29.01 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=10.5
Q ss_pred CCCCcccccccCC
Q 045234 33 RCLKVYHPECVDK 45 (299)
Q Consensus 33 ~CPkaYH~~Cl~~ 45 (299)
.|--+||..||..
T Consensus 60 ~C~H~Fh~~Ci~~ 72 (114)
T 1v87_A 60 KCSHAFHLLCLLA 72 (114)
T ss_dssp SSCCEECHHHHHH
T ss_pred CCCCcccHHHHHH
Confidence 5777899999874
No 153
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=33.06 E-value=31 Score=26.84 Aligned_cols=88 Identities=17% Similarity=0.421 Sum_probs=47.9
Q ss_pred cccceecc---CCceeeeCCCCCCCcccccccCCC----------ccccCCCCCeeccCC---------ccccccCCc--
Q 045234 15 IWCFKCKH---GGELRLCDNTRCLKVYHPECVDKD----------ESFLAAKTKWICNWH---------FCGVCRKAS-- 70 (299)
Q Consensus 15 d~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~~----------~~~~~~~g~W~Cp~H---------~C~~C~~~~-- 70 (299)
..|..|+. ++.++.-. .+.||+.|..=. ..+...++.-+|..| .|..|+++-
T Consensus 3 ~~C~~C~~~I~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAI----DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp CBBTTTCCBCCSSEEEEET----TEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred ccCcCCCCEeCCcEEEEEC----CCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 45777875 33344433 578888776521 122234667778643 688888741
Q ss_pred ------------eeccccCCCCCCCcccC-ccccccccCCcccccccHHHHH
Q 045234 71 ------------KFYCFCCPSAVCKTCLY-DIQFALVKENKGFCNSCLELAW 109 (299)
Q Consensus 71 ------------~~~C~~Cp~s~c~~CL~-~~~~~~v~~~~~~C~~C~~l~~ 109 (299)
+..|..|.. |..=|. +..|.. .++..+|..|..-..
T Consensus 79 ~e~~~~a~~~~~H~~CF~C~~--C~~~L~~g~~f~~-~~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 79 YEMTMRVKDKVYHLECFKCAA--CQKHFCVGDRYLL-INSDIVCEQDIYEWT 127 (131)
T ss_dssp TSEEEEETTEEEEGGGCBCTT--TCCBCCTTCEEEE-ETTEEEEGGGHHHHH
T ss_pred cceeEeeCCceECccCcccCC--CCCCCCCCCEEEE-ECCEEEcHHHHHHHh
Confidence 123444432 333342 333433 567889998865433
No 154
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=33.01 E-value=18 Score=28.42 Aligned_cols=42 Identities=7% Similarity=0.077 Sum_probs=24.9
Q ss_pred cccHHHHHHHHhhccCCCCCCCCCCCCcccccc---hhhHHhhhccccCCC
Q 045234 102 NSCLELAWLIETKKDVNYDGFDRSDAGERNRFY---FKGYWQKIKEKESLT 149 (299)
Q Consensus 102 ~~C~~l~~~le~~~~~~~~~~df~d~~~~~e~l---fk~yw~~ik~k~~lt 149 (299)
..|..+...|.+. ...+..|.. ++..- +.+|+++|+.+++|+
T Consensus 14 ~~l~~~l~~l~~~---~~~s~~F~~---pv~~~~~~~pdY~~iI~~Pmdl~ 58 (119)
T 3p1f_A 14 QALMPTLEALYRQ---DPESLPFRQ---PVDPQLLGIPDYFDIVKNPMDLS 58 (119)
T ss_dssp HHHHHHHHHHHTC---TTTTGGGSS---CCCHHHHTCTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHHh---CCCCchhcC---CCCchhccCCCHHHHhcCCCCHH
Confidence 3455555444432 222336776 33332 689999999999774
No 155
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=32.74 E-value=11 Score=30.40 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=2.1
Q ss_pred cccccccceeccCCce--eeeCC--------------CCCCCcccccccCC
Q 045234 11 EISEIWCFKCKHGGEL--RLCDN--------------TRCLKVYHPECVDK 45 (299)
Q Consensus 11 ~~~ed~C~vC~dGGeL--v~CD~--------------~~CPkaYH~~Cl~~ 45 (299)
+..++.|.||.+.=+. +.|-. ..|--+||..|+..
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~ 95 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 95 (117)
T ss_dssp CCCC-----------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHH
Confidence 3457889999854211 11110 14777899999875
No 156
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=31.75 E-value=19 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=27.7
Q ss_pred ccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 103 SCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 103 ~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
.|.++...|.+..... .|.. .-+ .-.+.+|+++|+.+++|+
T Consensus 14 ~c~~il~~l~~~~~s~----~F~~-pv~-~~~~pdY~~~I~~PmdL~ 54 (123)
T 3q2e_A 14 QCKELVNLIFQCEDSE----PFRQ-PVD-LVEYPDYRDIIDTPMDFG 54 (123)
T ss_dssp HHHHHHHHHHTSGGGG----GGSS-CCC-TTTCTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHhCCCcH----hhcC-CCC-hhhcCCHHHHcCCCCCHH
Confidence 5777777777765443 5765 222 124689999999999773
No 157
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.35 E-value=17 Score=25.92 Aligned_cols=26 Identities=27% Similarity=0.791 Sum_probs=21.2
Q ss_pred eccCCccccccCCceeccccCCCCCC
Q 045234 57 ICNWHFCGVCRKASKFYCFCCPSAVC 82 (299)
Q Consensus 57 ~Cp~H~C~~C~~~~~~~C~~Cp~s~c 82 (299)
..+...|.+|+..+.|.|-.|...||
T Consensus 9 ~~~~~~C~vC~~~~kY~CPrC~~~yC 34 (56)
T 2yqq_A 9 KCSTVVCVICLEKPKYRCPACRVPYC 34 (56)
T ss_dssp CCCCCCCTTTCSCCSEECTTTCCEES
T ss_pred CCCCCccCcCcCCCeeeCCCCCCCee
Confidence 34555799999988999999988777
No 158
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.23 E-value=20 Score=28.99 Aligned_cols=45 Identities=22% Similarity=0.597 Sum_probs=28.8
Q ss_pred ccccccCC-----ceeccccCCCCCCCcccCcccccc-ccCCcccccccHH
Q 045234 62 FCGVCRKA-----SKFYCFCCPSAVCKTCLYDIQFAL-VKENKGFCNSCLE 106 (299)
Q Consensus 62 ~C~~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~~-v~~~~~~C~~C~~ 106 (299)
.|..|+.. ...+|..|...||..|........ .....-.|..|..
T Consensus 71 ~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~~ 121 (125)
T 1joc_A 71 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFN 121 (125)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHH
T ss_pred CCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHHH
Confidence 56778775 246899999999999987542211 1223346777754
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.18 E-value=32 Score=29.88 Aligned_cols=53 Identities=21% Similarity=0.542 Sum_probs=35.6
Q ss_pred CCeeccCCccccccCC-----ceeccccCCCCCCCcccCccccccc---cCCcccccccHHH
Q 045234 54 TKWICNWHFCGVCRKA-----SKFYCFCCPSAVCKTCLYDIQFALV---KENKGFCNSCLEL 107 (299)
Q Consensus 54 g~W~Cp~H~C~~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~~v---~~~~~~C~~C~~l 107 (299)
..|. |...|..|+.. ...+|..|+..||..|........- ....-.|..|...
T Consensus 156 ~~W~-~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~ 216 (220)
T 1dvp_A 156 PNWA-DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAA 216 (220)
T ss_dssp CCCC-CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHH
T ss_pred ccCC-CCCccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHH
Confidence 3576 66788999875 3578999999999999885432110 1122377777653
No 160
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.07 E-value=22 Score=26.44 Aligned_cols=46 Identities=28% Similarity=0.582 Sum_probs=29.6
Q ss_pred ccccccCC-----ceeccccCCCCCCCcccCccccc-cccCCcccccccHHH
Q 045234 62 FCGVCRKA-----SKFYCFCCPSAVCKTCLYDIQFA-LVKENKGFCNSCLEL 107 (299)
Q Consensus 62 ~C~~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~-~v~~~~~~C~~C~~l 107 (299)
.|..|+.. ...+|..|...||..|....... ......-.|..|..+
T Consensus 21 ~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~ 72 (82)
T 2yw8_A 21 HCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTL 72 (82)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHH
T ss_pred cccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHH
Confidence 56778775 34689999999999998754211 112234477777643
No 161
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=30.39 E-value=15 Score=25.30 Aligned_cols=32 Identities=16% Similarity=0.412 Sum_probs=22.1
Q ss_pred ccccccceeccCC-ceeeeCCCCCCCcccccccCC
Q 045234 12 ISEIWCFKCKHGG-ELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 12 ~~ed~C~vC~dGG-eLv~CD~~~CPkaYH~~Cl~~ 45 (299)
..+..|.+|.+.- +-..-- .|.-+||..|+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~--~C~H~fc~~Ci~~ 35 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMAL--PCLHAFCYVCITR 35 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEET--TTTEEESTTHHHH
T ss_pred CCCCCCeeCCccccCCcEec--CCCCeeHHHHHHH
Confidence 3456799998753 223344 6888899999864
No 162
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=30.24 E-value=12 Score=25.84 Aligned_cols=33 Identities=24% Similarity=0.626 Sum_probs=24.0
Q ss_pred cccccccceeccC-------CceeeeCCCCCCCcccccccCC
Q 045234 11 EISEIWCFKCKHG-------GELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 11 ~~~ed~C~vC~dG-------GeLv~CD~~~CPkaYH~~Cl~~ 45 (299)
...+..|.+|.+. |+.+.-- .|.-+||..|+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~--~CgH~fc~~Ci~~ 46 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVST--ECGHVFCSQCLRD 46 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEEC--TTSCEEEHHHHHH
T ss_pred CCCCCCCcccChhhhccccccCCeEeC--CCCChHhHHHHHH
Confidence 3456779999853 4444555 7888999999975
No 163
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.48 E-value=25 Score=28.86 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=35.2
Q ss_pred CCccccccCC------ceeccccCCCCCCCcccCccccccccCCcccccccHHHHHHHHh
Q 045234 60 WHFCGVCRKA------SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLELAWLIET 113 (299)
Q Consensus 60 ~H~C~~C~~~------~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~l~~~le~ 113 (299)
.+.|.+|..+ .-..|..|...+|..|--..... -+...|.|.-|.+...+.-.
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~-~~~~~W~C~vC~k~rel~~k 113 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNN-RPHPVWLCKICLEQREVWKR 113 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCS-SSSCCEEEHHHHHHHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCC-CCccceechhhHHHHHHHHh
Confidence 3567777764 23578888888888885432111 14568999999887665544
No 164
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=28.71 E-value=28 Score=27.63 Aligned_cols=42 Identities=12% Similarity=-0.066 Sum_probs=26.9
Q ss_pred cccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 102 NSCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 102 ~~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
..|..+...|.+..... .|.. .-+ .-.+.+|+++|+.+++|+
T Consensus 16 ~~l~~il~~l~~~~~~~----~F~~-pv~-~~~~pdY~~iIk~PmdL~ 57 (123)
T 3hme_A 16 QLLEHFLRQLQRKDPHG----FFAF-PVT-DAIAPGYSMIIKHPMDFG 57 (123)
T ss_dssp HHHHHHHHHHHTTCTTC----SSSS-CCC-TTTSTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHhCCccH----hhcC-CCC-hhhccCHHHHCCCCCCHH
Confidence 35666666666644333 5765 221 235679999999999773
No 165
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.71 E-value=27 Score=29.36 Aligned_cols=50 Identities=24% Similarity=0.475 Sum_probs=37.1
Q ss_pred CCccccccCC------ceeccccCCCCCCCcccCccccccccCCcccccccHHHHHHHHh
Q 045234 60 WHFCGVCRKA------SKFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLELAWLIET 113 (299)
Q Consensus 60 ~H~C~~C~~~------~~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~l~~~le~ 113 (299)
.+.|..|..+ .-..|..|...+|..|-- +. -+...|.|.-|.+...++-.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~---~~-~~~~~W~C~vC~k~rel~~k 123 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH---AH-PEEQGWLCDPCHLARVVKIG 123 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE---CC-SSSSSCEEHHHHHHHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccc---cc-CCCCcEeeHHHHHHHHHHHh
Confidence 5678888886 246799999999999863 22 25678999999887655544
No 166
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=28.66 E-value=19 Score=27.30 Aligned_cols=51 Identities=18% Similarity=0.385 Sum_probs=32.8
Q ss_pred CccccccCC-----ceeccccCCCCCCCcccCcccccc-ccCCcccccccHHHHHHH
Q 045234 61 HFCGVCRKA-----SKFYCFCCPSAVCKTCLYDIQFAL-VKENKGFCNSCLELAWLI 111 (299)
Q Consensus 61 H~C~~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~~-v~~~~~~C~~C~~l~~~l 111 (299)
..|..|+.. ...+|..|...||..|........ .....-.|..|.......
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~ 77 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISKA 77 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHHH
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHHH
Confidence 357788875 347899999999999988543221 111234777777654433
No 167
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.48 E-value=25 Score=27.90 Aligned_cols=44 Identities=16% Similarity=-0.009 Sum_probs=29.2
Q ss_pred cccccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 100 FCNSCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 100 ~C~~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
+...|..+...|.+..... .|.. .-+ .-.+.+|+++|+.+|+|+
T Consensus 8 l~~~l~~il~~l~~~~~~~----~F~~-pv~-~~~~pdY~~iIk~PmdL~ 51 (121)
T 2d9e_A 8 FLILLRKTLEQLQEKDTGN----IFSE-PVP-LSEVPDYLDHIKKPMDFF 51 (121)
T ss_dssp HHHHHHHHHHHHHHHCSSC----SSSS-CCC-TTTCTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHHHcCCccH----hhCC-cCC-ccccCCHHHHcCCCcCHH
Confidence 4456777777777654433 5766 222 124789999999999873
No 168
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=27.44 E-value=26 Score=27.37 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=28.4
Q ss_pred cccccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 100 FCNSCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 100 ~C~~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
....|..+...|.+..... .|.. .-+ .-.+.+|+++|+.+|+|+
T Consensus 17 ~~~~~~~il~~l~~~~~s~----~F~~-pv~-~~~~pdY~~~I~~Pmdl~ 60 (116)
T 3nxb_A 17 DFTAMYKVLDVVKAHKDSW----PFLE-PVD-ESYAPNYYQIIKAPMDIS 60 (116)
T ss_dssp HHHHHHHHHHHHHHSTTCG----GGSS-CCC-TTTSTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHHHhCCCcH----hhcC-cCC-hhhccChHHHcCCCCCHH
Confidence 4556777777776654433 5755 222 124689999999999873
No 169
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.04 E-value=34 Score=30.07 Aligned_cols=52 Identities=23% Similarity=0.602 Sum_probs=35.0
Q ss_pred CCeeccCCccccccCC-----ceeccccCCCCCCCcccCccccccc---cCCcccccccHH
Q 045234 54 TKWICNWHFCGVCRKA-----SKFYCFCCPSAVCKTCLYDIQFALV---KENKGFCNSCLE 106 (299)
Q Consensus 54 g~W~Cp~H~C~~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~~v---~~~~~~C~~C~~ 106 (299)
..|. |...|..|+.. ...+|..|+..||..|......... ....-.|..|..
T Consensus 159 p~W~-~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~ 218 (226)
T 3zyq_A 159 PDWV-DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYE 218 (226)
T ss_dssp CCCC-CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHH
T ss_pred cccc-cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHH
Confidence 3476 66789999875 3578999999999999885422110 112336777764
No 170
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.98 E-value=66 Score=21.46 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=14.8
Q ss_pred cccccccceeccCCceeeeCCCCCCCcccccccC
Q 045234 11 EISEIWCFKCKHGGELRLCDNTRCLKVYHPECVD 44 (299)
Q Consensus 11 ~~~ed~C~vC~dGGeLv~CD~~~CPkaYH~~Cl~ 44 (299)
+..+..|.+|.+.=.-..-- .|.-+|+..|+.
T Consensus 3 e~~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~ 34 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLL--PCLHTLCSGCLE 34 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCS--TTSCCSBTTTCS
T ss_pred cccCCCceEeCCccCCeEEc--CCCCcccHHHHc
Confidence 34455677776532111111 344455555554
No 171
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.80 E-value=16 Score=24.91 Aligned_cols=33 Identities=24% Similarity=0.626 Sum_probs=23.4
Q ss_pred cccccccceeccC-------CceeeeCCCCCCCcccccccCC
Q 045234 11 EISEIWCFKCKHG-------GELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 11 ~~~ed~C~vC~dG-------GeLv~CD~~~CPkaYH~~Cl~~ 45 (299)
...+..|.||.+. +..+.-. .|--+||..|+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~--~CgH~fc~~Ci~~ 51 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVST--ECGHVFCSQCLRD 51 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEEC--SSSCEEEHHHHHH
T ss_pred CCCCCCCcccCccccccccccCCeEeC--CCCChhcHHHHHH
Confidence 4556779999863 3433444 6888999999975
No 172
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=26.67 E-value=25 Score=28.26 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=28.2
Q ss_pred ccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 103 SCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 103 ~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
.|..+...|.+..... .|.. .-+ .-.+.+|+++|+.+|+|+
T Consensus 25 ~~~~il~~l~~~~~s~----~F~~-pv~-~~~~pdY~~iI~~Pmdl~ 65 (135)
T 3mb3_A 25 QCEELLNLIFQCEDSE----PFRQ-PVD-LLEYPDYRDIIDTPMDFA 65 (135)
T ss_dssp HHHHHHHHHHHSGGGG----GGSS-CCC-TTTSTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHhCCCCh----hhcC-CCC-hhhCCCHHHHhCCCcCHH
Confidence 5788877777755443 5765 221 234679999999999873
No 173
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=25.97 E-value=12 Score=28.11 Aligned_cols=27 Identities=26% Similarity=0.806 Sum_probs=20.6
Q ss_pred ccccccC----CceeccccCCCCCCCcccCc
Q 045234 62 FCGVCRK----ASKFYCFCCPSAVCKTCLYD 88 (299)
Q Consensus 62 ~C~~C~~----~~~~~C~~Cp~s~c~~CL~~ 88 (299)
.|.+|.. .+...|..|..+||..|+..
T Consensus 5 ~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 5 LCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp BCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 4677864 35678899999999988874
No 174
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.82 E-value=59 Score=23.15 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=23.1
Q ss_pred CCccccCCCCCeeccCCccccccCCceeccccCCC
Q 045234 45 KDESFLAAKTKWICNWHFCGVCRKASKFYCFCCPS 79 (299)
Q Consensus 45 ~~~~~~~~~g~W~Cp~H~C~~C~~~~~~~C~~Cp~ 79 (299)
..+.|-.+.+.|.|+ .|.+=.+.....|..|..
T Consensus 21 fg~~FK~~~GsWeC~--~C~V~N~a~~~kC~ACet 53 (57)
T 2ebv_A 21 FGDKFKRPIGSWECS--VCCVSNNAEDNKCVSCMS 53 (57)
T ss_dssp CCSCCCCCSSSCCCS--SSCCCCCSSCSBCSSSCC
T ss_pred HHHhcCCCCCeeeCC--eeEccCccCCceeeEcCC
Confidence 333444578999998 566666667788888764
No 175
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=25.48 E-value=29 Score=26.94 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=27.5
Q ss_pred cccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 102 NSCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 102 ~~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
..|..+...|.+..... .|.. .-+ .-.+.+|+++|+.+++|+
T Consensus 10 ~~~~~il~~l~~~~~~~----~F~~-pvd-~~~~pdY~~iIk~PmdL~ 51 (112)
T 3d7c_A 10 TTLKNLLAQIKSHPSAW----PFME-PVK-KSEAPDYYEVIRFPIDLK 51 (112)
T ss_dssp HHHHHHHHHHHHSGGGG----GGSS-CCC-TTTSTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHcCCCch----hhcC-CCC-cccccCHHHHccCCcCHH
Confidence 45777777776654332 5766 222 124789999999999773
No 176
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=25.28 E-value=33 Score=26.00 Aligned_cols=46 Identities=22% Similarity=0.520 Sum_probs=27.2
Q ss_pred ccccccCC-----ceeccccCCCCCCCcccCccccccccC--CcccccccHHH
Q 045234 62 FCGVCRKA-----SKFYCFCCPSAVCKTCLYDIQFALVKE--NKGFCNSCLEL 107 (299)
Q Consensus 62 ~C~~C~~~-----~~~~C~~Cp~s~c~~CL~~~~~~~v~~--~~~~C~~C~~l 107 (299)
.|..|+.. ...+|..|...||..|..........+ ..-.|..|...
T Consensus 11 ~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~ 63 (88)
T 1wfk_A 11 RCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTI 63 (88)
T ss_dssp BCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHH
T ss_pred CCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHH
Confidence 45567664 246788888899999987532211111 22367777654
No 177
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=24.87 E-value=39 Score=21.65 Aligned_cols=27 Identities=37% Similarity=0.758 Sum_probs=18.5
Q ss_pred CCCCeeccCCccccccCCceeccccCCCC
Q 045234 52 AKTKWICNWHFCGVCRKASKFYCFCCPSA 80 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~~~~~C~~Cp~s 80 (299)
..|.|.|+ .|.+=...+.+.|..|..+
T Consensus 4 ~~G~W~C~--~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 4 GSGSWDCE--VCLVQNKADSTKCIACESA 30 (34)
T ss_dssp --CCEECT--TTCCEECSSCSBCTTTCCB
T ss_pred CCCceECC--eeEeECccccCEEcccCCc
Confidence 67899997 5666566677888888653
No 178
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=24.85 E-value=38 Score=27.17 Aligned_cols=45 Identities=9% Similarity=-0.048 Sum_probs=29.5
Q ss_pred ccccccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 99 GFCNSCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 99 ~~C~~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
.+...|..+...|.+..... .|.. .-+ .-.+.+|+++|+.+++|+
T Consensus 13 ~l~~~l~~il~~l~~~~~~~----~F~~-pv~-~~~~pdY~~iI~~PmdL~ 57 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDPAR----IFAQ-PVS-LKEVPDYLDHIKHPMDFA 57 (135)
T ss_dssp HHHHHHHHHHHHHHHTCTTC----SSSS-CCC-TTTCTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHHHHhCCcch----hhcC-CCC-hhhcCCHHHHhCCCCCHH
Confidence 35556777777777654433 5766 222 124689999999999873
No 179
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=24.71 E-value=17 Score=32.51 Aligned_cols=41 Identities=17% Similarity=0.506 Sum_probs=0.0
Q ss_pred CccccccCCce--eccccCCCCCCCcccCccccccccCCccccccc
Q 045234 61 HFCGVCRKASK--FYCFCCPSAVCKTCLYDIQFALVKENKGFCNSC 104 (299)
Q Consensus 61 H~C~~C~~~~~--~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C 104 (299)
..|.+|..... ..|..|..+||..|+..- .-..+..-|+.|
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~---~~~~~~~~CP~C 223 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKY---FQSNAEPRCPHC 223 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHH---TTTCSSCBCTTT
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHH---HHhCCCCCCCCC
No 180
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.69 E-value=39 Score=24.39 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=18.7
Q ss_pred cccccccccccceeccCCceeeeC
Q 045234 7 LKKEEISEIWCFKCKHGGELRLCD 30 (299)
Q Consensus 7 rk~~~~~ed~C~vC~dGGeLv~CD 30 (299)
++-....+.+|.+|+.-|+.| ||
T Consensus 12 Qr~p~pgePvCvvCGryGeYI-Cd 34 (60)
T 2yqp_A 12 QRWAEPGEPICVVCGRYGEYI-CD 34 (60)
T ss_dssp CCCCCTTSCCCSSSSSCCSEE-CS
T ss_pred hcCCCCCCceEEEecCcccee-ec
Confidence 344567789999999999988 77
No 181
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=24.61 E-value=30 Score=27.41 Aligned_cols=40 Identities=20% Similarity=0.097 Sum_probs=25.0
Q ss_pred ccHHHHHHHHhhccCCCCCCCCCCCCccc-ccchhhHHhhhccccCCC
Q 045234 103 SCLELAWLIETKKDVNYDGFDRSDAGERN-RFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 103 ~C~~l~~~le~~~~~~~~~~df~d~~~~~-e~lfk~yw~~ik~k~~lt 149 (299)
.|..+...|.+..... .|.. ++ .-.+.+|+++||.+++|+
T Consensus 12 ~l~~il~~L~~~~~~~----~F~~---PVd~~~~pdY~~iIk~PMDL~ 52 (117)
T 2i7k_A 12 ALNQLMRQLQRKDPSA----FFSF---PVTDFIAPGYSMIIKHPMDFS 52 (117)
T ss_dssp HHHHHHHHHHTSSGGG----TSSS---CCCTTTSSSHHHHCSCCCCHH
T ss_pred HHHHHHHHHHhCcccH----HhcC---CCCccccCCHHHHhCCCCCHH
Confidence 4566665565543222 5655 22 234689999999999873
No 182
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.55 E-value=51 Score=22.52 Aligned_cols=28 Identities=32% Similarity=0.729 Sum_probs=20.2
Q ss_pred cCCCCCeeccCCccccccCCceeccccCCC
Q 045234 50 LAAKTKWICNWHFCGVCRKASKFYCFCCPS 79 (299)
Q Consensus 50 ~~~~g~W~Cp~H~C~~C~~~~~~~C~~Cp~ 79 (299)
-.+.|.|.|+ .|.+=.......|..|..
T Consensus 6 k~~~gsW~C~--~C~v~N~a~~~kC~aC~~ 33 (47)
T 2ebr_A 6 SGPEGSWDCE--LCLVQNKADSTKCLACES 33 (47)
T ss_dssp SSCCSSCCCS--SSCCCCCSSCSBCSSSCC
T ss_pred cCCCCeeECC--eeecCCcCCcceecCcCC
Confidence 3478999998 455556667778888765
No 183
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=24.31 E-value=15 Score=24.66 Aligned_cols=31 Identities=26% Similarity=0.678 Sum_probs=21.1
Q ss_pred cccccceeccC-------CceeeeCCCCCCCcccccccCC
Q 045234 13 SEIWCFKCKHG-------GELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 13 ~ed~C~vC~dG-------GeLv~CD~~~CPkaYH~~Cl~~ 45 (299)
.+..|.+|.+. ++.+.-. .|.-+||..|+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~--~CgH~fc~~Ci~~ 39 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST--ECGHVFCSQCLRD 39 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE--TTSCEEEHHHHHH
T ss_pred CCCCCCccChhhhCccccCCCEEeC--CCCCchhHHHHHH
Confidence 34568889863 3333444 6888899999975
No 184
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=23.82 E-value=49 Score=20.03 Aligned_cols=26 Identities=19% Similarity=0.590 Sum_probs=17.1
Q ss_pred CCCCeeccCCccccccCCceeccccCCC
Q 045234 52 AKTKWICNWHFCGVCRKASKFYCFCCPS 79 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~~~~~C~~Cp~ 79 (299)
....|.||. |..=..++...|..|..
T Consensus 3 ~~~~W~C~~--CTf~N~~~~~~Ce~C~~ 28 (31)
T 1nj3_A 3 TSAMWACQH--CTFMNQPGTGHCEMCSL 28 (31)
T ss_dssp CSCCEECSS--SCCEECSSCSSCSSSCC
T ss_pred CCccccCCc--ccccCCCCCCccCCcCC
Confidence 346799995 55445666777777654
No 185
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=23.78 E-value=19 Score=30.35 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=30.9
Q ss_pred ccccceecc---CCceeeeCCCCCCCcccccccCCC----------ccccCCCCCeeccCC---------ccccccCC
Q 045234 14 EIWCFKCKH---GGELRLCDNTRCLKVYHPECVDKD----------ESFLAAKTKWICNWH---------FCGVCRKA 69 (299)
Q Consensus 14 ed~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~~~----------~~~~~~~g~W~Cp~H---------~C~~C~~~ 69 (299)
...|..|+. ++.++.-. .+.||+.|..=. ..++..++.-+|..| .|..|++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~ 78 (188)
T 1rut_X 5 WKRCAGCGGKIADRFLLYAM----DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQS 78 (188)
T ss_dssp CCBBTTTCCBCCCSEEEEET----TEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCE
T ss_pred CCcCccCCCEeCCceeEEec----CcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCc
Confidence 356888875 23344333 578898776521 123335677778754 38888764
No 186
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.19 E-value=24 Score=29.69 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=14.2
Q ss_pred cccceecc---CCceeeeCCCCCCCcccccccC
Q 045234 15 IWCFKCKH---GGELRLCDNTRCLKVYHPECVD 44 (299)
Q Consensus 15 d~C~vC~d---GGeLv~CD~~~CPkaYH~~Cl~ 44 (299)
..|..|+. .|+.+.-. -+.||+.|..
T Consensus 8 ~~C~~C~~~I~~~~~v~a~----g~~wH~~CF~ 36 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEEVQCE----GSSFHKSCFL 36 (192)
T ss_dssp EECTTTCCEECSSCCEEET----TEEECTTTCB
T ss_pred CcCccCCCeecceeEEEeC----CceecCCCCc
Confidence 45666665 34544332 4567766554
No 187
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=23.14 E-value=43 Score=21.23 Aligned_cols=26 Identities=27% Similarity=0.715 Sum_probs=17.0
Q ss_pred CCCCeeccCCccccccCCceeccccCCC
Q 045234 52 AKTKWICNWHFCGVCRKASKFYCFCCPS 79 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~~~~~C~~Cp~ 79 (299)
..+.|.|+ .|.+=.......|..|..
T Consensus 4 ~~g~W~C~--~C~~~N~~~~~kC~aC~t 29 (33)
T 3gj3_B 4 GSGTWDCD--TCLVQNKPEAVKCVACET 29 (33)
T ss_dssp --CCEECT--TTCCEECTTCSBCTTTCC
T ss_pred CCCceeCC--cccCCCccccCEEcccCC
Confidence 46889998 455555566777877754
No 188
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=22.81 E-value=19 Score=26.04 Aligned_cols=24 Identities=25% Similarity=0.762 Sum_probs=18.7
Q ss_pred CCccccccC----CceeccccCCCCCCC
Q 045234 60 WHFCGVCRK----ASKFYCFCCPSAVCK 83 (299)
Q Consensus 60 ~H~C~~C~~----~~~~~C~~Cp~s~c~ 83 (299)
...|.+|+. .+.|.|..|...||.
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~rYCS 38 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNAPYCS 38 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCCEESS
T ss_pred CCcCcCCCCCcCCCccccCcCCCCCccC
Confidence 347889984 578999999888873
No 189
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=22.60 E-value=36 Score=26.92 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=27.1
Q ss_pred cccHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 102 NSCLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 102 ~~C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
..|..+...|.+..... .|.. .-+ .-.+.+|+++|+.+++|+
T Consensus 16 ~~~~~il~~l~~~~~a~----~F~~-pvd-~~~~pdY~~iIk~PmdL~ 57 (121)
T 1e6i_A 16 AAIQNILTELQNHAAAW----PFLQ-PVN-KEEVPDYYDFIKEPMDLS 57 (121)
T ss_dssp HHHHHHHHHHHHSTTCG----GGSS-CCC-TTTSTTHHHHCSSCCCHH
T ss_pred HHHHHHHHHHHcCCCch----hhCC-CCC-hhhCcCHHHHcCCCCCHH
Confidence 35777776666543222 6766 222 224789999999999774
No 190
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=22.15 E-value=53 Score=20.31 Aligned_cols=26 Identities=19% Similarity=0.556 Sum_probs=18.0
Q ss_pred CCCCeeccCCccccccCCceeccccCCC
Q 045234 52 AKTKWICNWHFCGVCRKASKFYCFCCPS 79 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~~~~~C~~Cp~ 79 (299)
+...|.||. |..-...+...|..|..
T Consensus 5 ~~~~W~C~~--CT~~N~~~~~~Ce~C~~ 30 (34)
T 3a9j_C 5 MGAQWNCTA--CTFLNHPALIRCEQCEM 30 (34)
T ss_dssp CCCCEECTT--TCCEECTTCSBCTTTCC
T ss_pred CCCcCCCCC--CccccCCCCCeeCCCCC
Confidence 556899995 55545667777877754
No 191
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=21.80 E-value=44 Score=26.71 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=29.1
Q ss_pred ccHHHHHHHHhhccCCCCC---C-CCCCCCcccccchhhHHhhhccccCCC
Q 045234 103 SCLELAWLIETKKDVNYDG---F-DRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 103 ~C~~l~~~le~~~~~~~~~---~-df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
.|..+...|.+..+.. .| . .|.. . +..-.+.+|+++|+.+|+|+
T Consensus 15 ~~~~il~~l~~~~d~~-~~~~~s~~F~~-p-v~~~~~pdY~~iIk~PmdL~ 62 (129)
T 2grc_A 15 KMKKIVDAVIKYKDSS-SGRQLSEVFIQ-L-PSRKELPEYYELIRKPVDFK 62 (129)
T ss_dssp HHHHHHHHHHHCBCTT-TCCBGGGGGSS-C-CCTTTCHHHHHHCSSCCCHH
T ss_pred HHHHHHHHHHhccccc-ccCeeeHHhcC-C-CCcccCCCHHHHcCCCCCHH
Confidence 5788888887765421 12 1 6766 3 22345789999999999773
No 192
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=21.74 E-value=16 Score=35.87 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=27.4
Q ss_pred eeccccCCCCCCCcccCccccccccCCcccccccHHH
Q 045234 71 KFYCFCCPSAVCKTCLYDIQFALVKENKGFCNSCLEL 107 (299)
Q Consensus 71 ~~~C~~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~~l 107 (299)
...|+.|..=||..|+.-..........++|+.|...
T Consensus 20 MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 20 MIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp EEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred eEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 4679999999999999744332222368999999754
No 193
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=21.72 E-value=16 Score=26.96 Aligned_cols=27 Identities=26% Similarity=0.806 Sum_probs=20.9
Q ss_pred ccccccC----CceeccccCCCCCCCcccCc
Q 045234 62 FCGVCRK----ASKFYCFCCPSAVCKTCLYD 88 (299)
Q Consensus 62 ~C~~C~~----~~~~~C~~Cp~s~c~~CL~~ 88 (299)
.|.+|.. .+.-.|..|..+||..|+..
T Consensus 32 ~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 32 LCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp BCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred cCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 3666743 35678999999999999984
No 194
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.61 E-value=55 Score=25.11 Aligned_cols=37 Identities=24% Similarity=0.669 Sum_probs=22.9
Q ss_pred ccccccCCce-eccc-cCCCCCCCcccCccccccccCCcccccccH
Q 045234 62 FCGVCRKASK-FYCF-CCPSAVCKTCLYDIQFALVKENKGFCNSCL 105 (299)
Q Consensus 62 ~C~~C~~~~~-~~C~-~Cp~s~c~~CL~~~~~~~v~~~~~~C~~C~ 105 (299)
.|.+|...-. ..-. .|...||..|+.... . ..|+.|.
T Consensus 24 ~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~----~---~~CP~Cr 62 (117)
T 1jm7_B 24 RCSRCTNILREPVCLGGCEHIFCSNCVSDCI----G---TGCPVCY 62 (117)
T ss_dssp SCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT----T---TBCSSSC
T ss_pred CCCCCChHhhCccEeCCCCCHHHHHHHHHHh----c---CCCcCCC
Confidence 5667766432 1122 688899999987431 1 5688884
No 195
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.43 E-value=30 Score=24.10 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=21.7
Q ss_pred cccccccceeccCC-ceeeeCCCCCCCcccccccCC
Q 045234 11 EISEIWCFKCKHGG-ELRLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 11 ~~~ed~C~vC~dGG-eLv~CD~~~CPkaYH~~Cl~~ 45 (299)
...+..|.||.+.- +.+.- .|--+||..|+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~---~CgH~fC~~Ci~~ 44 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSL---PCKHVFCYLCVKG 44 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEE---TTTEEEEHHHHHH
T ss_pred CCCCCCCccCCcccCCCEEc---cCCCHHHHHHHHH
Confidence 34567799998753 32322 4888899999874
No 196
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=21.23 E-value=50 Score=31.90 Aligned_cols=34 Identities=35% Similarity=0.826 Sum_probs=26.5
Q ss_pred ccccccceecc----CCce--eeeCCCCCCCcccccccCC
Q 045234 12 ISEIWCFKCKH----GGEL--RLCDNTRCLKVYHPECVDK 45 (299)
Q Consensus 12 ~~ed~C~vC~d----GGeL--v~CD~~~CPkaYH~~Cl~~ 45 (299)
+....|.||.. +|++ ..|+...|...||..||..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~k 345 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEE 345 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHH
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHH
Confidence 44567999974 3555 4798888999999999964
No 197
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.03 E-value=19 Score=28.65 Aligned_cols=46 Identities=24% Similarity=0.534 Sum_probs=26.8
Q ss_pred ccccccCC-----ceeccccCCC-----CCCCcccCccccccc-cCCcccccccHHH
Q 045234 62 FCGVCRKA-----SKFYCFCCPS-----AVCKTCLYDIQFALV-KENKGFCNSCLEL 107 (299)
Q Consensus 62 ~C~~C~~~-----~~~~C~~Cp~-----s~c~~CL~~~~~~~v-~~~~~~C~~C~~l 107 (299)
.|+.|+.. ..+.|..|.. ++|++|-.+-+.... -....||.+|..|
T Consensus 34 ~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chgL 90 (101)
T 2jne_A 34 HCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL 90 (101)
T ss_dssp BCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEE
T ss_pred cCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhcCcchhhccCCce
Confidence 34466643 3456888864 578888665432211 2246789888644
No 198
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.91 E-value=59 Score=22.58 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=20.3
Q ss_pred CCCCeeccCCccccccCCceeccccCCCCCC
Q 045234 52 AKTKWICNWHFCGVCRKASKFYCFCCPSAVC 82 (299)
Q Consensus 52 ~~g~W~Cp~H~C~~C~~~~~~~C~~Cp~s~c 82 (299)
+.+.|.|+. |..=.......|..|...-.
T Consensus 8 ~~~~W~C~~--CT~~N~~~~~~C~~C~~pr~ 36 (53)
T 2d9g_A 8 DEGYWDCSV--CTFRNSAEAFKCMMCDVRKG 36 (53)
T ss_dssp CCCCEECSS--SCCEECSSCSSCSSSCCCCC
T ss_pred CCCCcCCCC--CccCCCCCCCccCCCCCcCC
Confidence 567899993 44445667788888876544
No 199
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=20.73 E-value=73 Score=24.38 Aligned_cols=64 Identities=9% Similarity=0.114 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhh-h---hhhhhhHHHHHHHHhhhcccCCcCCCCeeecchhhHHHHHH-----------HhhhHHHHhcc
Q 045234 216 LEMQKMLKLHAR-T---LQEQNNKNTMVACRNHTQEALVKAMQLHVTCHWNMWNLYLR-----------NHHLQGLLNTM 280 (299)
Q Consensus 216 ~eL~~fl~~~g~-~---lsr~~~v~k~lw~YIk~n~LqdP~~Kr~I~CD~kL~~lF~~-----------~f~m~klL~~H 280 (299)
.||+..+..|++ | ..-..++-+.+-.||+.++-.+|..|...+ ..++..|.+ ...|+.++.+|
T Consensus 18 ~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l--~~I~~~~~~~~~l~dEKv~lA~~~~dlvdkh 95 (104)
T 4afl_A 18 FELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALL--KQIQEAYGKCKEFGDDKVQLAMQTYEMVDKH 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666632 2 111125677888899988777776655333 445555554 66788888887
Q ss_pred c
Q 045234 281 E 281 (299)
Q Consensus 281 ~ 281 (299)
+
T Consensus 96 i 96 (104)
T 4afl_A 96 I 96 (104)
T ss_dssp H
T ss_pred H
Confidence 5
No 200
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.19 E-value=26 Score=28.42 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=22.8
Q ss_pred cHHHHHHHHhhccCCCCCCCCCCCCcccccchhhHHhhhccccCCC
Q 045234 104 CLELAWLIETKKDVNYDGFDRSDAGERNRFYFKGYWQKIKEKESLT 149 (299)
Q Consensus 104 C~~l~~~le~~~~~~~~~~df~d~~~~~e~lfk~yw~~ik~k~~lt 149 (299)
|..+...|.+..... .|.. + +.+|+++|+.+|+|+
T Consensus 17 ~~~il~~l~~~~~~~----~F~~-P------~pdY~~iIk~PmDL~ 51 (131)
T 2dkw_A 17 LRDVTKRLATDKRFN----IFSK-P------VSDYLEVIKEPMDLS 51 (131)
T ss_dssp HHHHHHHHHHSGGGC----TTSS-C------CSSCTTSCSSCCCHH
T ss_pred HHHHHHHHHhCccch----hhcC-c------CccHHhHcCCCcCHH
Confidence 455555555433222 5766 3 789999999999773
Done!