BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045235
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 25 KVIKEAISEALVYYYPFAGRIKEGPNRKLMVDRNGEGILFLEVEANFKLEQLGDAIKPPC 84
KV+K+A+S ALV +YP AGR+K + ++ ++ NGEG+LF+E E++ ++ GD P
Sbjct: 59 KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APT 116
Query: 85 PYLEQLIYNVPCSDGILGCPLLLIEVS 111
L +LI V S GI LL+++V+
Sbjct: 117 LELRRLIPAVDYSQGISSYALLVLQVT 143
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 25 KVIKEAISEALVYYYPFAGRIKEGPNRKLMVDRNGEGILFLEVEANFKLEQLGDAIKPPC 84
KV+K+A+S ALV +YP AGR+K + ++ ++ NGEG+LF+E E++ ++ GD P
Sbjct: 59 KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APT 116
Query: 85 PYLEQLIYNVPCSDGILGCPLLLIEVS 111
L +LI V S GI LL+++V+
Sbjct: 117 LELRRLIPAVDYSQGISSYALLVLQVT 143
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 25 KVIKEAISEALVYYYPFAGRIKEGPNRKLMVDRNGEGILFLEVEANFKLEQLGDAIKPPC 84
KV+K+A+S ALV +YP AGR+K + ++ ++ NGEG+LF+E E++ ++ GD P
Sbjct: 56 KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APT 113
Query: 85 PYLEQLIYNVPCSDGILGCPLLLIEVS 111
L +LI V S GI LL+++V+
Sbjct: 114 LELRRLIPAVDYSQGISSYALLVLQVT 140
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 35.8 bits (81), Expect = 0.005, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 27 IKEAISEALVYYYPFAGRIKEGPNRKLMVDRNGEGILFLEVEANFKLEQ 75
+K+++S+ L ++YP AGRI N VD N G+ F+E +L Q
Sbjct: 63 LKQSLSKVLTHFYPLAGRI----NVNSSVDCNDSGVPFVEARVQAQLSQ 107
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 27 IKEAISEALVYYYPFAGR--IKEGPNRKLMVDR-NGEGILFLEVEANFKLEQLGDAIKPP 83
IK ++S L ++YPF G+ + P +K + G+ + E N L +L
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 84 CPYLEQLIYNVPCSDGILGC---PLLLIEVSLLFPNH 117
C L+ + S + C PL ++V+ LFPN
Sbjct: 125 CDKFYDLVPILGESTRLSDCIKIPLFSVQVT-LFPNQ 160
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 27 IKEAISEALVYYYPFAGR--IKEGPNRKLMVDR-NGEGILFLEVEANFKLEQLGDAIKPP 83
IK ++S L ++YPF G+ + P +K + G+ + E N L +L
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 84 CPYLEQLIYNVPCSDGILGC---PLLLIEVSLLFPNH 117
C L+ + S + C PL ++V+ LFPN
Sbjct: 125 CDKFYDLVPILGESTRLSDCIKIPLFSVQVT-LFPNQ 160
>pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae
Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric
Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme
Length = 533
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 51 RKLMVDRNGEGILFLEVEANFKLEQLGDAIKPPCPYLEQLIYNVPCSDGILGC 103
R + +R+ EG+ FL ++ +QLG P +L +++ DGILGC
Sbjct: 89 RYIAENRDQEGVRFLGKSLSYVRDQLG---LDPAAFLHEMV------DGILGC 132
>pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|B Chain B, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|C Chain C, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|D Chain D, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|E Chain E, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|F Chain F, R487a Mutant Of L-Aspartate Beta-Decarboxylase
Length = 546
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 51 RKLMVDRNGEGILFLEVEANFKLEQLGDAIKPPCPYLEQLIYNVPCSDGILGC 103
R + +R+ EG+ FL ++ +QLG P +L +++ DGILGC
Sbjct: 89 RYIAENRDQEGVRFLGKSLSYVRDQLG---LDPAAFLHEMV------DGILGC 132
>pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 546
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 51 RKLMVDRNGEGILFLEVEANFKLEQLGDAIKPPCPYLEQLIYNVPCSDGILGC 103
R + +R+ EG+ FL ++ +QLG P +L +++ DGILGC
Sbjct: 89 RYIAENRDQEGVRFLGKSLSYVRDQLG---LDPAAFLHEMV------DGILGC 132
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 24 VKVIKEAISEALVYYYPFAGRIK-----EGPNRKLMVDRNGEGILFLEVEANFK--LEQL 76
+ +K+++S L YY P AG + G V N ++F E + +F +
Sbjct: 57 IPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYH 116
Query: 77 GDAIKPPCPYLEQLI--YNVPCSDGILGCPLLLIEVSLLFPNH 117
K ++ QL + P G+ P+L I+V+ LFPNH
Sbjct: 117 PRNTKDFYHFVPQLAEPKDAP---GVQLAPVLAIQVT-LFPNH 155
>pdb|2JOZ|A Chain A, Solution Nmr Structure Of Protein Yxef, Northeast
Structural Genomics Consortium Target Sr500a
Length = 135
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 38 YYPFAGRIKEGPNRKLMVDRNGEGILFLEVEANFKLEQLGDAIK 81
YYP +K G N L+ ++NG+ +E+ E+ + K
Sbjct: 83 YYPLKSTLKRGENGTLIWEQNGQRKTMTRIESKTGREEKDEKSK 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.145 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,126,587
Number of Sequences: 62578
Number of extensions: 115096
Number of successful extensions: 186
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 16
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)