Query 045235
Match_columns 117
No_of_seqs 142 out of 1016
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 19:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045235.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045235hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2joza1 b.60.1.1 (A:2-127) Hyp 37.2 10 0.00073 23.3 2.3 35 33-67 77-111 (126)
2 d1zq1c3 d.128.1.5 (C:5-276,C:4 30.6 20 0.0014 25.9 3.4 22 52-73 171-192 (321)
3 d1f7la_ d.150.1.2 (A:) Holo-(a 30.1 51 0.0037 19.5 5.6 12 26-37 55-66 (118)
4 d1s14a_ d.122.1.2 (A:) Topoiso 28.2 37 0.0027 21.9 4.3 40 22-64 9-50 (168)
5 d1q9ja1 c.43.1.2 (A:1-175) Pol 27.0 39 0.0029 20.6 4.1 33 23-55 35-67 (175)
6 d2vqei1 d.14.1.1 (I:2-128) Rib 26.0 18 0.0013 22.6 2.1 19 22-40 71-89 (127)
7 d2d6fc3 d.128.1.5 (C:1-270,C:3 23.9 29 0.0021 24.9 3.3 21 53-73 171-191 (319)
8 d2f2ab2 d.128.1.5 (B:4-293) As 23.1 36 0.0026 24.2 3.6 20 54-73 135-154 (290)
9 d1bvsa3 b.40.4.2 (A:1-63) DNA 21.0 22 0.0016 19.1 1.6 22 40-61 4-25 (63)
10 d2gy9i1 d.14.1.1 (I:4-129) Rib 18.2 32 0.0023 21.2 2.1 19 22-40 70-88 (126)
No 1
>d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus subtilis [TaxId: 1423]}
Probab=37.19 E-value=10 Score=23.32 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=28.0
Q ss_pred HhhhhhccCCeeeeeCCCCceEEEecCCCeeEEEE
Q 045235 33 EALVYYYPFAGRIKEGPNRKLMVDRNGEGILFLEV 67 (117)
Q Consensus 33 ~aL~~yyplAGRL~~~~~g~~~I~cnd~GV~fveA 67 (117)
+-|.+|||+-..|++.++|-+...-|++--.++..
T Consensus 77 ~ylg~~~p~kstlkrg~n~tliw~~~g~~ktmtri 111 (126)
T d2joza1 77 QYLGPYYPLKSTLKRGENGTLIWEQNGQRKTMTRI 111 (126)
T ss_dssp EEESTTCSCEEEEEECSTTCEEEEETTEEEEEEEC
T ss_pred EEcCCCcchhhHHhCCCCCcEEEEecCceeeeEEe
Confidence 45889999999999999898888888875555443
No 2
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}
Probab=30.62 E-value=20 Score=25.93 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=17.2
Q ss_pred ceEEEecCCCeeEEEEEeccch
Q 045235 52 KLMVDRNGEGILFLEVEANFKL 73 (117)
Q Consensus 52 ~~~I~cnd~GV~fveA~~~~~l 73 (117)
...||.|-.||.++|-.+.-++
T Consensus 171 ~~lvD~NRaGvPLiEIVTePd~ 192 (321)
T d1zq1c3 171 EVIYRLDRLGIPLIEISTTPDI 192 (321)
T ss_dssp EEEEESTTTTCEEEEEECCTTB
T ss_pred ceEEeecccCcceEEEeccccc
Confidence 3457889999999999876443
No 3
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Bacillus subtilis [TaxId: 1423]}
Probab=30.14 E-value=51 Score=19.54 Aligned_cols=12 Identities=42% Similarity=0.338 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhh
Q 045235 26 VIKEAISEALVY 37 (117)
Q Consensus 26 ~Lk~SLs~aL~~ 37 (117)
+.|+|+.++|..
T Consensus 55 AaKEA~~Kalg~ 66 (118)
T d1f7la_ 55 AAKEAFSKAFGT 66 (118)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHhccc
Confidence 589999999964
No 4
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=28.24 E-value=37 Score=21.92 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhhhhhccCCeeeee--CCCCceEEEecCCCeeE
Q 045235 22 DHVKVIKEAISEALVYYYPFAGRIKE--GPNRKLMVDRNGEGILF 64 (117)
Q Consensus 22 ~~~~~Lk~SLs~aL~~yyplAGRL~~--~~~g~~~I~cnd~GV~f 64 (117)
-+-+.|=.|.-++|.-| |.++.. ..||.+.|..|+.|+++
T Consensus 9 lv~EivDNsiDEa~aG~---~~~I~V~l~~D~si~V~D~GRGIPv 50 (168)
T d1s14a_ 9 LGQEVIDNSVDEALAGH---AKRVDVILHADQSLEVIDDGRGMPV 50 (168)
T ss_dssp HHHHHHHHHHHHHHTTS---CSEEEEEECTTSCEEEEECSSCCCC
T ss_pred EEeeeeecHHHHHHcCC---CCEEEEEEeCCCeEEEEEEecccce
Confidence 35667778888888866 667764 36899999999999995
No 5
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.97 E-value=39 Score=20.55 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhhhhccCCeeeeeCCCCceEE
Q 045235 23 HVKVIKEAISEALVYYYPFAGRIKEGPNRKLMV 55 (117)
Q Consensus 23 ~~~~Lk~SLs~aL~~yyplAGRL~~~~~g~~~I 55 (117)
-+++|++|+..++..+.-|-.+++.+++|.+..
T Consensus 35 d~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~~~ 67 (175)
T d1q9ja1 35 DVDALSDAFDALLETHPVLASHLEQSSDGGWNL 67 (175)
T ss_dssp CHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEE
T ss_pred CHHHHHHHHHHHHHhchhheEEEEEeCCeeEEE
Confidence 368999999999999999999998876665443
No 6
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}
Probab=25.95 E-value=18 Score=22.56 Aligned_cols=19 Identities=42% Similarity=0.658 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHhhhhhcc
Q 045235 22 DHVKVIKEAISEALVYYYP 40 (117)
Q Consensus 22 ~~~~~Lk~SLs~aL~~yyp 40 (117)
.-+.+++-++|++|+.|.|
T Consensus 71 gQa~Air~aIaRaL~~~~~ 89 (127)
T d2vqei1 71 GQIDAIKLGIARALVQYNP 89 (127)
T ss_dssp HHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHCH
Confidence 3578999999999999977
No 7
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.93 E-value=29 Score=24.95 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=16.5
Q ss_pred eEEEecCCCeeEEEEEeccch
Q 045235 53 LMVDRNGEGILFLEVEANFKL 73 (117)
Q Consensus 53 ~~I~cnd~GV~fveA~~~~~l 73 (117)
..||.|-.||.++|-.+.-++
T Consensus 171 ~~vD~NRaGvPLiEIVTePd~ 191 (319)
T d2d6fc3 171 VVFRLDRLGIPLVEITTDPSM 191 (319)
T ss_dssp EEEETTSTTCEEEEEECCSCC
T ss_pred eEecccccCceeEEEEeeccc
Confidence 357889999999999876443
No 8
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=23.05 E-value=36 Score=24.18 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=15.8
Q ss_pred EEEecCCCeeEEEEEeccch
Q 045235 54 MVDRNGEGILFLEVEANFKL 73 (117)
Q Consensus 54 ~I~cnd~GV~fveA~~~~~l 73 (117)
.||.|-.|+.++|-.+.-++
T Consensus 135 lvD~NRaGvPLiEIVTePd~ 154 (290)
T d2f2ab2 135 LVDLNRQGTPLIEIVSEPDI 154 (290)
T ss_dssp EEECSSTTCEEEEEEECTTB
T ss_pred EEeeccCCCceeeeeccCCc
Confidence 47889999999998876443
No 9
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=21.05 E-value=22 Score=19.12 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=17.0
Q ss_pred cCCeeeeeCCCCceEEEecCCC
Q 045235 40 PFAGRIKEGPNRKLMVDRNGEG 61 (117)
Q Consensus 40 plAGRL~~~~~g~~~I~cnd~G 61 (117)
-+.|++.....+.+.|+|++=|
T Consensus 4 ~i~G~i~~~~~~~ivi~v~GvG 25 (63)
T d1bvsa3 4 SVRGEVLEVALDHAVIEAAGIG 25 (63)
T ss_dssp EECEEEEEECSSCEEEEETTEE
T ss_pred EEEEEEEEECCCEEEEEECCEE
Confidence 3678888877788999997544
No 10
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]}
Probab=18.19 E-value=32 Score=21.25 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhhhhhcc
Q 045235 22 DHVKVIKEAISEALVYYYP 40 (117)
Q Consensus 22 ~~~~~Lk~SLs~aL~~yyp 40 (117)
.=+.+++-++|++|+.|.|
T Consensus 70 gQa~Air~aIaRaLv~~~~ 88 (126)
T d2gy9i1 70 GQAGAIRHGITRALMEYDE 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHHhCH
Confidence 3478999999999999966
Done!