BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045236
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 358 bits (919), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 237/606 (39%), Positives = 327/606 (53%), Gaps = 58/606 (9%)
Query: 1 TSKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLV 60
TS +F CN+KIIGAR+++ G RPI + PRDT GHGTHTASTAAG LV
Sbjct: 58 TSNNF---RCNRKIIGARSYHIG------RPISP-GDVNGPRDTNGHGTHTASTAAGGLV 107
Query: 61 SNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGAS 120
S A+L+ G ARG ARIA YK+CW+ GC D+DILAA D AIADGVD+ISLSVG +
Sbjct: 108 SQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGA 167
Query: 121 GYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPA 180
Y D+IAIGSF A + G++ S SAGN GP FT +++PW+L+V AST+DR+F
Sbjct: 168 N-PRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226
Query: 181 DAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGD--------RFCYMGRLEPSKVQGK 232
+G+G+ F GVS+ + + LV G D + RFC + P+ ++GK
Sbjct: 227 QVQIGNGQSFQGVSI---NTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGK 283
Query: 233 IVVCDRGGNARVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIRE 292
IVVC+ + ++ +NT + ADS+ +P++++
Sbjct: 284 IVVCE--ASFGPHEFFKSLDGAAGVLMTSNTRD-----YADSYPLPSSVLDPNDLLATLR 336
Query: 293 YIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWT 352
YI + P ATI T+++ S AP V +FSSRGPN T +++KPD+ PGV ILAAW
Sbjct: 337 YIYSIRSPGATIFKSTTILNAS--APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWP 394
Query: 353 GSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNL 412
+ R FNIISGTSMSCPH++G+A ++ P WSPAAIKSALMTTA +
Sbjct: 395 SVAPVGGIR---RNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPM 451
Query: 413 DNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRIS 472
+ A F +G+GHV+P +A+ PGLVYD + S+YV FLC GY+ + +
Sbjct: 452 N---------ARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAV- 501
Query: 473 VFVREPVSSDICTRALATPG---NLNYPXXXXXXXXXXXXXKY-KRVVKNVGSSVDAVYE 528
++ D G +LNYP +Y R + +V + Y
Sbjct: 502 ----RRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQA-STYR 556
Query: 529 VKXXXXXXXXXXXWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVHLV 588
P+ L+F+ ++ +T + G V S S+ WSDGVH V
Sbjct: 557 AMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG-SIKGFVV----SASLVWSDGVHYV 611
Query: 589 RSPIAV 594
RSPI +
Sbjct: 612 RSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 231/597 (38%), Positives = 324/597 (54%), Gaps = 29/597 (4%)
Query: 5 FPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNAS 64
F AS CN+K+IGA F +G + + ++ T S RDT+GHGTH AS AG+ S
Sbjct: 64 FNASMCNRKLIGANYFNKGILAN-DPTVNITMNSA--RDTDGHGTHCASITAGNFAKGVS 120
Query: 65 LFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGYAP 124
F YA G ARG+A +AR+AVYK ++ G F SD++AAMDQA+ADGVD+IS+S G + P
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYR-FIP 179
Query: 125 QYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAIL 184
Y +D+I+I SFGA GV+VS SAGN GPG + N +PWIL V + DR F L
Sbjct: 180 LY-EDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 185 GDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRL--EPSKVQGKIVVCDRGGNA 242
G+G G SL+ + ++Y D C L + + IV+CD G+
Sbjct: 239 GNGLKIRGWSLFPARAFVR-DSPVIYNKTLSD--CSSEELLSQVENPENTIVICDDNGDF 295
Query: 243 RVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTA 302
+ + ++ E + + P +V G ++ Y+K S PTA
Sbjct: 296 SDQMRIITRARLKAAIFIS---EDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTA 352
Query: 303 TIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEI 362
TI F+ T + + PAP VAA S+RGP+ I KPD++APGV ILAA+ + T +
Sbjct: 353 TITFQETYLD-TKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGT 411
Query: 363 D-PRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKD 421
+ D+ + SGTSM+ PH +G+AA+L+ A+P+WSP+AI+SA+MTTA LDN+ + IKD
Sbjct: 412 NILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKD 471
Query: 422 LASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSS 481
+ + +TP GAGHVDPNRAL+PGLVYD +YV LCS+ + ++ R S
Sbjct: 472 SDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASH 531
Query: 482 DICTRALATPGNLNYPXXXXXXXX----XXXXXKYKRVVKNVGSSVDAVYEVKXXXXXXX 537
+ C+ A +LNYP K+KR V NVG A Y+ K
Sbjct: 532 N-CSNPSA---DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGA-ATYKAKLKAPKNS 586
Query: 538 XXXXWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEW--SDGVHLVRSPI 592
P L F + + +Y +T +G +G + GSI W +G H VRSPI
Sbjct: 587 TISVSPQILVFKNKNEKQSYTLTIRYIGDEG---QSRNVGSITWVEQNGNHSVRSPI 640
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 320 VAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSC 379
+ FSSRGP + LKP+V+APG I+AA T P + GT+M+
Sbjct: 309 ITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQ----PINDYYTAAPGTAMAT 362
Query: 380 PHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVD 439
PHV+G+AALL +A+P W+P +K+AL+ TA D+ +E +GAG V+
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETA-----------DIVKPDEIADIAYGAGRVN 411
Query: 440 PNRA 443
+A
Sbjct: 412 AYKA 415
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 16/147 (10%)
Query: 32 IDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91
+D +P D GHGTH AS AAG+ + + G+ +GMA A++ K+
Sbjct: 165 VDFVNGKTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQ 217
Query: 92 GCFD-SDILAAMDQAIAD----GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVS 146
G SDI+ +D A+ + G+ VI+LS+G+S + D S A+ + A G+VV
Sbjct: 218 GSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNN--AWDAGLVVV 275
Query: 147 CSAGNSGPGPFTATN--IAPWILTVGA 171
+AGNSGP +T + A ++TVGA
Sbjct: 276 VAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 109/445 (24%), Positives = 174/445 (39%), Gaps = 78/445 (17%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D +++ K+ D E HGTH +G L NA G +A++ + ++ G
Sbjct: 84 DYSKDGKTAVDQE-HGTH----VSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNG 138
Query: 93 CFD--SDILAAMDQAIADGVDVISLSVG--ASGYAPQYDQDSIAIGSFGAAQHGVVVSCS 148
D + A+ A+ G VI++S G A YA D+ A A GV + S
Sbjct: 139 LADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTS 196
Query: 149 AGNSGP---------------GPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGV 193
AGN G A LTV + + D++ A +
Sbjct: 197 AGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVK-------T 249
Query: 194 SLYAGESLPDFKLHLVYGGDCGDRFCY----MGRLEPSKVQGKIVVCDRGG-NARVEXXX 248
+ + +P + D + Y M + V+GKI + +RG + + +
Sbjct: 250 DDHQAKEMPVLSTNRFEPNKAYD-YAYANRGMKEDDFKDVKGKIALIERGDIDFKDKIAN 308
Query: 249 XXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRG 308
+I N D+ + + +PA + G + L TI F
Sbjct: 309 AKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLKDNSKKTITFNA 362
Query: 309 T-VISPSPPAPKVAAFSSRGPNSLTAE-ILKPDVIAPGVNILAAWTGSTGPTDLEIDPRR 366
T + P+ K++ FSS G LTA+ +KPD+ APG +IL++ +
Sbjct: 363 TPKVLPTASDTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK----------- 408
Query: 367 VDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAA----IKSALMTTAYNLDNSGEN 418
+ +SGTSMS P V+G+ LL+K YPD +P+ K LM++A L + E
Sbjct: 409 --YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEK 466
Query: 419 IKDLASGEESTPFIHGAGHVDPNRA 443
+P GAG VD +A
Sbjct: 467 AY-------FSPRQQGAGAVDAKKA 484
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D++APGVN+ + + GST + ++GTSM+ PHV+G+AAL+++ P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 399 AAIKSALMTTAYNLDNSGENIKDLASGEEST 429
I++ L TA L N+ L + E +T
Sbjct: 238 VQIRNHLKNTATGLGNTNLYGSGLVNAEAAT 268
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDIL 99
S +D GHGTH A T A +L ++ + G+A A + K+ + G +
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVL--------GVAPSAELYAVKVLGASGSGSVSSI 105
Query: 100 A-AMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT 158
A ++ A +G+ V +LS+G+ + +Q A+ S A GV+V ++GNSG G +
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQ---AVNS--ATSRGVLVVAASGNSGAGSIS 160
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 113/443 (25%), Positives = 169/443 (38%), Gaps = 74/443 (16%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D +++ K+ D E HGTH +G L NA G +A++ + ++ G
Sbjct: 75 DYSKDGKTAVDQE-HGTH----VSGILSGNAPSETKEPYRLEGAXPEAQLLLXRVEIVNG 129
Query: 93 CFD--SDILAAMDQAIADGVDVISLSVG--ASGYAPQYDQDSIAIGSFGAAQHGVVVSCS 148
D + A+ AI G VI+ S G A YA D+ A A GV + S
Sbjct: 130 LADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTS 187
Query: 149 AGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLH- 207
AGN F P + AD+ L V+ Y+ PD +L
Sbjct: 188 AGNDSS--FGGKTRLPLADHPDYGVVGTPAAADSTLT-------VASYS----PDKQLTE 234
Query: 208 --LVYGGDCGDR---FCYMGRLEPSK------------------VQGKIVVCDRGG-NAR 243
V D D+ R EP+K V+GKI + +RG + +
Sbjct: 235 TVRVKTADQQDKEXPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFK 294
Query: 244 VEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTAT 303
+ +I N D+ + + PA + G + L P T
Sbjct: 295 DKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDG------LLLKDNPQKT 348
Query: 304 IVFRGT-VISPSPPAPKVAAFSSRGPNSLTAE-ILKPDVIAPGVNILAAWTGSTGPTDLE 361
I F T + P+ K++ FSS G LTA+ +KPD+ APG +IL++ +
Sbjct: 349 ITFNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK------ 399
Query: 362 IDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYN-LDNSGENIK 420
+ +SGTS S P V+G+ LL+K Y P S + A L +S +
Sbjct: 400 -------YAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSSATALY 452
Query: 421 DLASGEESTPFIHGAGHVDPNRA 443
D +P GAG VD +A
Sbjct: 453 DEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D++APGVN+ + + GST + ++GTSM+ PHV+G AAL+++ P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 399 AAIKSALMTTAYNLDNSGENIKDLASGEEST 429
I++ L TA +L ++ L + E +T
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDI 98
S +D GHGTH A T A +L ++ + G+A A + K+ + G S I
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVL--------GVAPSAELYAVKVLGADGRGAISSI 105
Query: 99 LAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSG 153
++ A +G+ V +LS+G+ + +Q A+ S A GV+V ++GNSG
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQ---AVNS--ATSRGVLVVAASGNSG 155
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D++APGVN+ + + GST + ++GTSM+ PHV+G AAL+++ P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 399 AAIKSALMTTAYNLDNSGENIKDLASGEEST 429
I++ L TA +L ++ L + E +T
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDIL 99
S +D GHGTH A T A +L ++ + G+A A + K+ + G +
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVL--------GVAPSAELYAVKVLGASGSGSVSSI 105
Query: 100 A-AMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT 158
A ++ A +G+ V +LS+G+ + +Q A+ S A GV+V ++GNSG G +
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQ---AVNS--ATSRGVLVVAASGNSGAGSIS 160
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D++APGVN+ + + GST + ++GTSM+ PHV+G AAL+++ P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 399 AAIKSALMTTAYNLDNSGENIKDLASGEEST 429
I++ L TA +L ++ L + E +T
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDIL 99
S +D GHGTH A T A +L ++ + G+A A + K+ + G +
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVL--------GVAPNAELYAVKVLGASGSGSVSSI 105
Query: 100 A-AMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT 158
A ++ A +G+ V +LS+G+ + +Q A+ S A GV+V ++GNSG G +
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQ---AVNS--ATSRGVLVVAASGNSGAGSIS 160
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D++APGVN+ + + GST + ++GTSM+ PHV+G AAL+++ P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 399 AAIKSALMTTAYNLDNSGENIKDLASGEEST 429
I++ L TA +L ++ L + E +T
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDIL 99
S +D GHGTH A T A +L ++ + G+A A + K+ + G + +
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVL--------GVAPNAELYAVKVLGASGGGSNSSI 105
Query: 100 A-AMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT 158
A ++ A +G+ V +LS+G+ + +Q A+ S A GV+V ++GNSG G +
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQ---AVNS--ATSRGVLVVAASGNSGAGSIS 160
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D++APGVN+ + + GST + ++GTSM+ PHV+G AAL+++ P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 399 AAIKSALMTTAYNL 412
I++ L TA +L
Sbjct: 238 VQIRNHLKNTATSL 251
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 27/119 (22%)
Query: 297 SQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTG 356
++YP+ ++ G V S + AP FSS GP + DV+APGV+I + G
Sbjct: 160 AKYPS--VIAVGAVDSSNQRAP----FSSVGP--------ELDVMAPGVSICSTLPGG-- 203
Query: 357 PTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
+ +SGTSM+ PHV+G AAL+ +P+W+ ++S+L TA L +S
Sbjct: 204 -----------KYGALSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDS 251
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 13/91 (14%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D++APGVN+ + + GST + ++GT M+ PHV+G AAL+++ P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 399 AAIKSALMTTAYNLDNSGENIKDLASGEEST 429
I++ L TA +L ++ L + E +T
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD-SDI 98
S +D GHGTH A T A D + G G+A A + K+ + G S I
Sbjct: 55 STQDGNGHGTHVAGTIAA--------LDNSIG-VLGVAPSAELYAVKVLGASGSGAISSI 105
Query: 99 LAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPG 155
++ A +G+ V +LS+G+ + +Q A+ S A GV+V ++GN G G
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQ---AVNS--ATSRGVLVVAASGNEGAG 157
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 13/91 (14%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D++APGVN+ + + GST + ++GT M+ PHV+G AAL+++ P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 399 AAIKSALMTTAYNLDNSGENIKDLASGEEST 429
I++ L TA +L ++ L + E +T
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD-SDI 98
S +D GHGTH A T A D + G G+A A + K+ + G S I
Sbjct: 55 STQDGNGHGTHVAGTIAA--------LDNSIG-VLGVAPSAELYAVKVLGASGSGAISSI 105
Query: 99 LAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT 158
++ A +G+ V +LS+G+ + +Q A+ S A GV+V ++GNSG G +
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQ---AVNS--ATSRGVLVVAASGNSGAGSIS 160
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 13/91 (14%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D++APGVN+ + + GST + ++GT M+ PHV+G AAL+++ P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 399 AAIKSALMTTAYNLDNSGENIKDLASGEEST 429
I++ L TA +L ++ L + E +T
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDIL 99
S +D GHGTH A T A +L ++ + G+A A + K+ + G +
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVL--------GVAPNAELYAVKVLGASGSGSVSSI 105
Query: 100 A-AMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT 158
A ++ A +G+ V +LS+G+ + +Q A+ S A GV+V ++GNSG G +
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQ---AVNS--ATSRGVLVVAASGNSGAGSIS 160
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 27/119 (22%)
Query: 297 SQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTG 356
++YP+ ++ G V S + AP FSS GP + DV+APGV+I + G
Sbjct: 160 AKYPS--VIAVGAVDSSNQRAP----FSSVGP--------ELDVMAPGVSICSTLPGG-- 203
Query: 357 PTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
+ +SGT+M+ PHV+G AAL+ +P+W+ ++S+L TA L +S
Sbjct: 204 -----------KYGALSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDS 251
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGTSM+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 216
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L NS
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS 251
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D++APGVN+ + + GST + ++GT M+ PHV+G AAL+++ P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 399 AAIKSALMTTAYNL 412
I++ L TA +L
Sbjct: 238 VQIRNHLKNTATSL 251
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTLPGN-------------KYGAYSGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A D + G G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVAA--------LDNSIG-VLGVAPSASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS 260
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS 260
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A +L ++ + G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVA-ALNNSIGVL--------GVAPSASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGTSM+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 216
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 251
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A D + G G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVAA--------LDNSIG-VLGVAPSASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A S L G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVAALNNSIGVL---------GVAPCASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I++ G+ + SGT+M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTLPGN-------------KYGAKSGTAMASP 216
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 251
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAKSGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A S L G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVAALNNSIGVL---------GVAPCASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I++ G+ + SGT+M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTLPGN-------------KYGAKSGTAMASP 216
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 251
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTLPGN-------------KYGAYSGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDS 260
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A D + G G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVAA--------LDNSIG-VLGVAPSASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 37 ESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD- 95
E+ +D HGTH A T A +L ++ + G+A A + K+ + G
Sbjct: 54 ETNPFQDNNSHGTHVAGTVA-ALNNSIGVL--------GVAPSASLYAVKVLGADGSGQY 104
Query: 96 SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 105 SWIINGIEWAIANNMDVINMSLG 127
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A +L ++ + G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVA-ALNNSIGVL--------GVAPSASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A +L ++ + G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVA-ALNNSIGVL--------GVAPSASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYSGTXMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A +L ++ + G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVA-ALNNSIGVL--------GVAPSASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYSGTXMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A +L ++ + G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVA-ALNNSIGVL--------GVAPCASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAKSGTXMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A +L ++ + G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVA-ALNNSIGVL--------GVAPSASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGT M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTLPGN-------------KYGAKSGTXMASP 216
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 251
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + SGT M+ P
Sbjct: 175 ASFSSVGP--------ELDVMAPGVSIWSTLPGN-------------KYGAKSGTXMASP 213
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 248
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D+ APG +I ++W S T N ISGTSM+ PHV+G+AAL P+ SP
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 399 AAIKSALMTTA 409
A + + L T A
Sbjct: 247 AQVTNLLKTRA 257
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + +GT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTXMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A +L ++ + G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVA-ALNNSIGVL--------GVAPSASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + +GT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTXMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A +L ++ + G+A A + K+ + G
Sbjct: 53 SETNPFQDNNSHGTHVAGTVA-ALNNSIGVL--------GVAPSASLYAVKVLGADGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVG 118
S I+ ++ AIA+ +DVI++S+G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLG 127
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS G + +V+APGV++ + + +T + ++GTSM+ P
Sbjct: 186 ASFSSVGS--------ELEVMAPGVSVYSTYPSNT-------------YTSLNGTSMASP 224
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ YP S + +++ L +TA NL +S
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTATNLGDS 259
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 29/150 (19%)
Query: 5 FPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNAS 64
+S + K++G +F G ESY D GHGTH A T A
Sbjct: 35 IASSHTDLKVVGGASFVSG-ESY-------------NTDGNGHGTHVAGTVAA------- 73
Query: 65 LFDYARGEARGMAVKARIAVYKICWSPGCFD-SDILAAMDQAIADGVDVISLSVGASGYA 123
D G G+A + K+ S G S I++ ++ A +G+DVI++S+G +
Sbjct: 74 -LDNTTG-VLGVAPNVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSLGGPSGS 131
Query: 124 PQYDQDSIAIGSFGAAQHGVVVSCSAGNSG 153
Q A+ A G+VV +AGNSG
Sbjct: 132 TALKQ---AVDK--AYASGIVVVAAAGNSG 156
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS G +E+ DV+APGV+I + G T + +GT M+ P
Sbjct: 187 ASFSSVG-----SEL---DVMAPGVSIQSTLPGGT-------------YGAYNGTXMATP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P W+ A ++ L +TA L NS
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A +L ++ + G+A A + K+ S G
Sbjct: 53 SETNPYQDGSSHGTHVAGTIA-ALNNSIGVL--------GVAPSASLYAVKVLDSTGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSF--GAAQHGVVVSCSAGNS 152
S I+ ++ AI++ +DVI++S+G S A+ + A G+VV+ +AGN
Sbjct: 104 YSWIINGIEWAISNNMDVINMSLGG-------PTGSTALKTVVDKAVSSGIVVAAAAGNE 156
Query: 153 GPGPFTAT 160
G T+T
Sbjct: 157 GSSGSTST 164
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 21/99 (21%)
Query: 317 APKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTS 376
A + A+FSS G +E+ DV+APGV+I + G T + +GTS
Sbjct: 183 ANQRASFSSAG-----SEL---DVMAPGVSIQSTLPGGT-------------YGAYNGTS 221
Query: 377 MSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
M+ PHV+G AAL+ +P W+ A ++ L +TA L +S
Sbjct: 222 MATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGSS 260
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A +L ++ + G+A A + K+ S G
Sbjct: 53 SETNPYQDGSSHGTHVAGTIA-ALNNSIGVL--------GVAPSASLYAVKVLDSTGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSF--GAAQHGVVVSCSAGNS 152
S I+ ++ AI++ +DVI++S+G S A+ + A G+VV+ +AGN
Sbjct: 104 YSWIINGIEWAISNNMDVINMSLGG-------PTGSTALKTVVDKAVSSGIVVAAAAGNE 156
Query: 153 GPGPFTAT 160
G T+T
Sbjct: 157 GSSGSTST 164
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS G +E+ DV+APGV+I + G T + +GT M+ P
Sbjct: 187 ASFSSAG-----SEL---DVMAPGVSIQSTLPGGT-------------YGAYNGTCMATP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P W+ A ++ L +TA L NS
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD 95
E+ +D HGTH A T A +L ++ + G++ A + K+ S G
Sbjct: 53 SETNPYQDGSSHGTHVAGTIA-ALNNSIGVL--------GVSPSASLYAVKVLDSTGSGQ 103
Query: 96 -SDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSF--GAAQHGVVVSCSAGNS 152
S I+ ++ AI++ +DVI++S+G S A+ + A G+VV+ +AGN
Sbjct: 104 YSWIINGIEWAISNNMDVINMSLGG-------PTGSTALKTVVDKAVSSGIVVAAAAGNE 156
Query: 153 GPGPFTAT 160
G T+T
Sbjct: 157 GSSGSTST 164
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS GP + DV+APGV+I + G+ + +GTS + P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSXASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+W+ ++S+L T L +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 17/102 (16%)
Query: 319 KVAAFSSRGPNSLTAEIL----KPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISG 374
+VA +SSRG S + + ++ APG ++ + W +N ISG
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISG 248
Query: 375 TSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSG 416
TSM+ PHVSGLAA + P S ++S L A ++D G
Sbjct: 249 TSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEA--RGMAVKARIAVYKICWSPGC-F 94
+ S D GHGTH A TA L D +A G+A A + YK+ G +
Sbjct: 62 NNSCTDRNGHGTHVAGTA---------LADGGSDQAGIYGVAPDADLWAYKVLLDSGSGY 112
Query: 95 DSDILAAM----DQAIADGVD-VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSA 149
DI AA+ DQA A G +IS+S+G+S + I+ A GV++ +A
Sbjct: 113 SDDIAAAIRHAADQATATGTKTIISMSLGSSA-----NNSLISSAVNYAYSKGVLIVAAA 167
Query: 150 GNSG 153
GNSG
Sbjct: 168 GNSG 171
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 23/108 (21%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNI------- 371
+VA FSSR V APGV IL ST P + I + N+
Sbjct: 327 RVAGFSSRSDGV--------SVGAPGVTIL-----STVPGEDSIGYEGHNENVPATNGGT 373
Query: 372 ---ISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSG 416
GTSM+ PHV+G+ A+L + +P+ P I+ L TA++ + +G
Sbjct: 374 YDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG 421
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D+ APG +I +AW S T ++GTSM+ PHV+G+AAL + P +P
Sbjct: 196 DLFAPGASIPSAWYTSDTATQ-----------TLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 399 AAIKSALMTTA 409
A++ SA++ A
Sbjct: 245 ASVASAILNGA 255
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 319 KVAAFSSRGPNSLTAEIL----KPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISG 374
+VA +SSRG S + + ++ APG ++ + W +N ISG
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISG 248
Query: 375 TSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSG 416
T M+ PHVSGLAA + P S ++S L A ++D G
Sbjct: 249 TXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEA--RGMAVKARIAVYKICWSPGC-F 94
+ S D GHGTH A TA L D +A G+A A + YK+ G +
Sbjct: 62 NNSCTDRNGHGTHVAGTA---------LADGGSDQAGIYGVAPDADLWAYKVLLDSGSGY 112
Query: 95 DSDILAAM----DQAIADGVD-VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSA 149
DI AA+ DQA A G +IS+S+G+S + I+ A GV++ +A
Sbjct: 113 SDDIAAAIRHAADQATATGTKTIISMSLGSSA-----NNSLISSAVNYAYSKGVLIVAAA 167
Query: 150 GNSG 153
GNSG
Sbjct: 168 GNSG 171
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 17/86 (19%)
Query: 312 SPSPPA--PKVAAFSSRGPNSLTAEI--LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
SPS PA P+V A + N A +P+V APGV+IL ST P D
Sbjct: 191 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDIL-----STYPDD-------- 237
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAY 393
+ + GT+M+ PHVSG+ AL++ AY
Sbjct: 238 SYETLMGTAMATPHVSGVVALIQAAY 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 17/86 (19%)
Query: 312 SPSPPA--PKVAAFSSRGPNSLTAEI--LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
SPS PA P+V A + N A +P+V APGV+IL ST P D
Sbjct: 189 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDIL-----STYPDD-------- 235
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAY 393
+ + GT+M+ PHVSG+ AL++ AY
Sbjct: 236 SYETLMGTAMATPHVSGVVALIQAAY 261
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 17/86 (19%)
Query: 312 SPSPPA--PKVAAFSSRGPNSLTAEI--LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
SPS PA P+V A + N A +P+V APGV+IL ST P D
Sbjct: 269 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDIL-----STYPDD-------- 315
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAY 393
+ + GT+M+ PHVSG+ AL++ AY
Sbjct: 316 SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 17/86 (19%)
Query: 312 SPSPPA--PKVAAFSSRGPNSLTAEI--LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
SPS PA P+V A + N A +P+V APGV+IL ST P D
Sbjct: 269 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDIL-----STYPDD-------- 315
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAY 393
+ + GT+M+ PHVSG+ AL++ AY
Sbjct: 316 SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 17/86 (19%)
Query: 312 SPSPPA--PKVAAFSSRGPNSLTAEI--LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
SPS PA P+V A + N A +P+V APGV+IL ST P D
Sbjct: 269 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDIL-----STYPDD-------- 315
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAY 393
+ + GT+M+ PHVSG+ AL++ AY
Sbjct: 316 SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 17/86 (19%)
Query: 312 SPSPPA--PKVAAFSSRGPNSLTAEI--LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
SPS PA P+V A + N A +P+V APGV+IL ST P D
Sbjct: 269 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDIL-----STYPDD-------- 315
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAY 393
+ + GT+M+ PHVSG+ AL++ AY
Sbjct: 316 SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 17/86 (19%)
Query: 312 SPSPPA--PKVAAFSSRGPNSLTAEI--LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
SPS PA P+V A + N A +P+V APGV+IL ST P D
Sbjct: 200 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDIL-----STYPDD-------- 246
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAY 393
+ + GT+M+ PHVSG+ AL++ AY
Sbjct: 247 SYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 17/86 (19%)
Query: 312 SPSPPA--PKVAAFSSRGPNSLTAEI--LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
SPS PA P+V A + N A +P+V APGV+IL ST P D
Sbjct: 266 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDIL-----STYPDD-------- 312
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAY 393
+ + GT+M+ PHVSG+ AL++ AY
Sbjct: 313 SYETLMGTAMATPHVSGVVALIQAAY 338
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 17/86 (19%)
Query: 312 SPSPPA--PKVAAFSSRGPNSLTAEI--LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
SPS PA P+V A + N A +P+V APGV+IL ST P D
Sbjct: 200 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDIL-----STYPDD-------- 246
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAY 393
+ + GT+M+ PHVSG+ AL++ AY
Sbjct: 247 SYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 17/86 (19%)
Query: 312 SPSPPA--PKVAAFSSRGPNSLTAEI--LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
SPS PA P+V A + N A +P+V APGV+IL ST P D
Sbjct: 189 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDIL-----STYPDD-------- 235
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAY 393
+ + GT M+ PHVSG+ AL++ AY
Sbjct: 236 SYETLMGTXMATPHVSGVVALIQAAY 261
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS G AE+ +V+APG + ST PT+ + ++GTSM+ P
Sbjct: 186 ASFSSVG-----AEL---EVMAPGAGVY-----STYPTN--------TYATLNGTSMASP 224
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+ S + +++ L +TA L +S
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS G AE+ +V+APG + ST PT+ + ++GTSM+ P
Sbjct: 186 ASFSSVG-----AEL---EVMAPGAGVY-----STYPTN--------TYATLNGTSMASP 224
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+ S + +++ L +TA L +S
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS G AE+ +V+APG + ST PT+ + ++GTSM+ P
Sbjct: 186 ASFSSVG-----AEL---EVMAPGAGVY-----STYPTN--------TYATLNGTSMASP 224
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+ S + +++ L +TA L +S
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS G AE+ +V+APG + ST PT+ + ++GTSM+ P
Sbjct: 186 ASFSSVG-----AEL---EVMAPGAGVY-----STYPTN--------TYATLNGTSMASP 224
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+ S + +++ L +TA L +S
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS G AE+ +V+APG + ST PT+ + ++GTSM+ P
Sbjct: 187 ASFSSVG-----AEL---EVMAPGAGVY-----STYPTN--------TYATLNGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+ S + +++ L +TA L +S
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 260
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS G AE+ +V+APG + ST PT+ + ++GTSM+ P
Sbjct: 187 ASFSSVG-----AEL---EVMAPGAGVY-----STYPTN--------TYATLNGTSMASP 225
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+ S + +++ L +TA L +S
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 260
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 17/86 (19%)
Query: 312 SPSPPA--PKVAAFSSRGPNSLTAEI--LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
SPS PA P+V A + N A +P+V APGV+IL ST P D
Sbjct: 189 SPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDIL-----STYPDD-------- 235
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAY 393
+ + GT M+ PHVSG+ AL++ AY
Sbjct: 236 SYETLMGTCMATPHVSGVVALIQAAY 261
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL 389
D+ APG NIL+ W G T N ISGTSM+ PH+ GL A L
Sbjct: 203 DIFAPGSNILSTWIGGT-------------TNTISGTSMATPHIVGLGAYL 240
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 320 VAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSC 379
VA FSSRGP +KPDV+APG IL+A + S P + + GTSM+
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 380 PHVSGLAALLRKAYPDW-----SPAAIKSALMTTAYNL 412
P V+G A LR+ + P+ +K+AL+ A ++
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADI 296
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 37 ESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD- 95
+ + DT GHGTH AGS++ N S +GMA +A + I S G
Sbjct: 58 RTNNANDTNGHGTH----VAGSVLGNGS-------TNKGMAPQANLVFQSIMDSGGGLGG 106
Query: 96 --SDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSG 153
S++ QA + G + + S GA+ Y DS + + ++ + + +AGN G
Sbjct: 107 LPSNLQTLFSQAYSAGARIHTNSWGAA-VNGAYTTDSRNVDDY-VRKNDMTILFAAGNEG 164
Query: 154 P--GPFTATNIAPWILTVGAS 172
P G +A A +TVGA+
Sbjct: 165 PNGGTISAPGTAKNAITVGAT 185
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 23/102 (22%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
++A+FS+ G DV+APGV+I++ TG+ + +SGTSM+
Sbjct: 190 RLASFSNYGT--------WVDVVAPGVDIVSTITGNR-------------YAYMSGTSMA 228
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIK 420
PHV+GLAALL A + I+ A+ TA + +G K
Sbjct: 229 SPHVAGLAALL--ASQGRNNIEIRQAIEQTADKISGTGTYFK 268
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 30 RPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARI-AVYKIC 88
+ D + P D HGTH A AA +NA+ GMA RI AV +
Sbjct: 55 KGYDFVDNDYDPMDLNNHGTHVAGIAAAE-TNNATGI-------AGMAPNTRILAVRALD 106
Query: 89 WSPGCFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCS 148
+ SDI A+ A G +VI+LS+G + + A+ A G VV +
Sbjct: 107 RNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN---AVNY--AWNKGSVVVAA 161
Query: 149 AGNSG 153
AGN+G
Sbjct: 162 AGNNG 166
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A+FSS G AE+ +V+APG + ST PT+ + ++GT M+ P
Sbjct: 186 ASFSSVG-----AEL---EVMAPGAGVY-----STYPTN--------TYATLNGTXMASP 224
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS 415
HV+G AAL+ +P+ S + +++ L +TA L +S
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGEN 418
D+ +GTSM+ PHVSG+A L+ +P+ S + +++AL TA +L +G +
Sbjct: 361 DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRD 411
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 37/191 (19%)
Query: 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDIL 99
P + HGTH A T A ++ +N + + A I + K+ G + S ++
Sbjct: 59 PGNNNAHGTHVAGTIA-AIANNEGVVGVMPNQ------NANIHIVKVFNEAGWGYSSSLV 111
Query: 100 AAMDQAI-ADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT 158
AA+D + + G +V+++S+G SG + +++++ +GV++ +AGN+G ++
Sbjct: 112 AAIDTCVNSGGANVVTMSLGGSG-STTTERNALNT----HYNNGVLLIAAAGNAGDSSYS 166
Query: 159 ATNIAPWILTVGA--STIDR------------EFPADAIL-----GDGRI----FGGVSL 195
+++V A S +D P +AIL G+GR+ GG S
Sbjct: 167 YPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSY 226
Query: 196 YAGESLPDFKL 206
++ +P +L
Sbjct: 227 FSNGVVPHNRL 237
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 51/115 (44%), Gaps = 21/115 (18%)
Query: 319 KVAAFSSRGPNSLTAE--ILKPDV--IAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISG 374
+VA FSSRG + I K DV APG + + W + ISG
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDG-------------GYATISG 247
Query: 375 TSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLD----NSGENIKDLASG 425
TSM+ PH +GLAA + P S ++ L T A D NS + D+ASG
Sbjct: 248 TSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVNDILSGNSAGSGDDIASG 302
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDI 98
S D +GHGTH A +A + + + ++ G+A +A + YK+ G +D
Sbjct: 63 NSCTDRQGHGTHVAGSALANGGTGSGVY--------GVAPEADLWAYKVLGDDGSGYADD 114
Query: 99 LA-----AMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSG 153
+A A DQA A V+ S +++ A GV++ +AGNSG
Sbjct: 115 IAEAIRHAGDQATALNTKVVINMSLGSSGESSLITNAVDY----AYDKGVLIIAAAGNSG 170
Query: 154 PGP 156
P P
Sbjct: 171 PKP 173
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 13/51 (25%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL 389
D+ APG +I + W G G T N ISGTSM+ PH++GLAA L
Sbjct: 201 DIFAPGTSITSTWIG--GRT-----------NTISGTSMATPHIAGLAAYL 238
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL 389
D+ PG +IL+ W G + + ISGTSM+ PHV+GLAA L
Sbjct: 200 DIFGPGTDILSTWIGGSTRS-------------ISGTSMATPHVAGLAAYL 237
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 35/145 (24%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD-SDI 98
S RD GHGTH A T G+A K ++ K+ G S I
Sbjct: 62 SSRDGNGHGTHCAGTVG--------------SRTYGVAKKTQLFGVKVLDDNGSGQYSTI 107
Query: 99 LAAMDQAIADGVD-------VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGN 151
+A MD +D + V SLS+G GY+ + + + S GV+V+ +AGN
Sbjct: 108 IAGMDFVASDKNNRNCPKGVVASLSLGG-GYSSSVNSAAARLQS-----SGVMVAVAAGN 161
Query: 152 SGPGPFTATNIAPW----ILTVGAS 172
+ A N +P + TVGAS
Sbjct: 162 NNA---DARNYSPASEPSVCTVGAS 183
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL 389
D+ PG +IL+ W G + + ISGTSM+ PHV+GLAA L
Sbjct: 200 DIFGPGTSILSTWIGGSTRS-------------ISGTSMATPHVAGLAAYL 237
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 35/145 (24%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD-SDI 98
S RD GHGTH A T G+A K ++ K+ G S I
Sbjct: 62 SSRDGNGHGTHCAGTVG--------------SRTYGVAKKTQLFGVKVLDDNGSGQYSTI 107
Query: 99 LAAMDQAIADGVD-------VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGN 151
+A MD +D + V SLS+G GY+ + + + S GV+V+ +AGN
Sbjct: 108 IAGMDFVASDKNNRNCPKGVVASLSLGG-GYSSSVNSAAARLQS-----SGVMVAVAAGN 161
Query: 152 SGPGPFTATNIAPW----ILTVGAS 172
+ A N +P + TVGAS
Sbjct: 162 NNA---DARNYSPASEPSVCTVGAS 183
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL 389
D+ PG +IL+ W G + + ISGTSM+ PHV+GLAA L
Sbjct: 200 DIFGPGTSILSTWIGGSTRS-------------ISGTSMATPHVAGLAAYL 237
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 320 VAAFSSRGPN-SLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
V A +SRG S + + D+ APG +IL+ T P ++ ++GTSM+
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMA 278
Query: 379 CPHVSGLAALLRKA----YPDWSPAAIKSALMTT 408
PHVSG+AAL+ A + +PA +K L++T
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 320 VAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSC 379
VA FSSRGP +KPDV+APG IL+A + S P + GTS +
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYXGGTSXAT 258
Query: 380 PHVSGLAALLRKAYPDW-----SPAAIKSALMTTAYNL 412
P V+G A LR+ + P+ +K+AL+ A ++
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADI 296
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 37 ESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD- 95
+ + DT GHGTH AGS++ N S +GMA +A + I S G
Sbjct: 58 RTNNANDTNGHGTHV----AGSVLGNGS-------TNKGMAPQANLVFQSIMDSGGGLGG 106
Query: 96 --SDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSG 153
S++ QA + G + + S GA+ Y DS + + ++ + + +AGN G
Sbjct: 107 LPSNLQTLFSQAYSAGARIHTNSWGAA-VNGAYTTDSRNVDDY-VRKNDMTILFAAGNEG 164
Query: 154 P--GPFTATNIAPWILTVGAS 172
P G +A A +TVGA+
Sbjct: 165 PNGGTISAPGTAKNAITVGAT 185
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 320 VAAFSSRGPN-SLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
V A +SRG S + + D+ APG +IL+ T P ++ ++GTSM+
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMA 278
Query: 379 CPHVSGLAALLRKA----YPDWSPAAIKSALMTT 408
PHVSG+AAL+ A + +PA +K L++T
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 320 VAAFSSRGPN-SLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
V A +SRG S + + D+ APG +IL+ T P ++ ++GTSM+
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMA 278
Query: 379 CPHVSGLAALLRKA----YPDWSPAAIKSALMTT 408
PHVSG+AAL+ A + +PA +K L++T
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 311 ISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAW-TGSTGPTDLEIDPRRVDF 369
+ + P K A FS+ G + + APG NIL+ G GP R +
Sbjct: 226 VGATTPKGKRAPFSNYGA--------RVHLAAPGTNILSTIDVGQAGPV-------RSSY 270
Query: 370 NIISGTSMSCPHVSGLAALLRKA 392
+ +GTSM+ PHVSG+AAL+ A
Sbjct: 271 GMKAGTSMAAPHVSGVAALVISA 293
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 311 ISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAW-TGSTGPTDLEIDPRRVDF 369
+ + P K A FS+ G + + APG NIL+ G GP R +
Sbjct: 226 VGATTPKGKRAPFSNYGA--------RVHLAAPGTNILSTIDVGQAGPV-------RSSY 270
Query: 370 NIISGTSMSCPHVSGLAALLRKA 392
+ +GTSM+ PHVSG+AAL+ A
Sbjct: 271 GMKAGTSMAAPHVSGVAALVISA 293
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D+ APG I +AW + ISGTSM+ PHV+G+AAL + +P
Sbjct: 196 DLFAPGSQIKSAWYDG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 399 AAIKSALMTTA 409
+ L + A
Sbjct: 243 LQLTGLLNSRA 253
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 15/78 (19%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
DV APG +W ST PT + +SGTSM+ PHV+G+A LL A S
Sbjct: 201 DVAAPG-----SWIYSTYPTST--------YASLSGTSMATPHVAGVAGLL--ASQGRSA 245
Query: 399 AAIKSALMTTAYNLDNSG 416
+ I++A+ TA + +G
Sbjct: 246 SNIRAAIENTADKISGTG 263
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D + +P++ GHGTH A AA ++ +N++ G A KA I ++ + G
Sbjct: 57 DFVDNDSTPQNGNGHGTHCAGIAA-AVTNNSTGI-------AGTAPKASILAVRVLDNSG 108
Query: 93 -----CFDSDILAAMDQAIADGVDVISLSVGAS 120
+ I A DQ G VISLS+G +
Sbjct: 109 SGTWTAVANGITYAADQ----GAKVISLSLGGT 137
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 368 DFN-IISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLD 413
D+N +++GTS + P SG ALL AYPD S ++ L +A +D
Sbjct: 327 DYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVD 373
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 15/78 (19%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
DV APG +I ST PT + +SGTSM+ PHV+G+A LL A S
Sbjct: 201 DVAAPGSSIY-----STYPTST--------YASLSGTSMATPHVAGVAGLL--ASQGRSA 245
Query: 399 AAIKSALMTTAYNLDNSG 416
+ I++A+ TA + +G
Sbjct: 246 SNIRAAIENTADKISGTG 263
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D + +P++ GHGTH A AA V+N S G A KA I ++ + G
Sbjct: 57 DFVDNDSTPQNGNGHGTHCAGIAA--AVTNNST------GIAGTAPKASILAVRVLDNSG 108
Query: 93 -----CFDSDILAAMDQAIADGVDVISLSVGAS 120
+ I A DQ G VISLS+G +
Sbjct: 109 SGTWTAVANGITYAADQ----GAKVISLSLGGT 137
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 370 NIISGTSMSCPHVSGLAAL----LRKAYPDWSPAAIKSALMTTAYNL 412
+ +GTS + PHV+G AL L++ ++SP +IK A+ TA L
Sbjct: 456 QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKL 502
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 23/96 (23%)
Query: 323 FSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHV 382
FS+ G N+ K ++APG IL A + P L +GTSM+ P +
Sbjct: 256 FSNWGGNNT-----KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVM 298
Query: 383 SGLAALL-----RKAYPDWSPAAIKSALMTTAYNLD 413
+G++ALL ++ P A+++AL+ TA D
Sbjct: 299 TGISALLMSLQVQQGKP-VDAEAVRTALLKTAIPCD 333
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 23/96 (23%)
Query: 323 FSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHV 382
FS+ G N+ K ++APG IL A + P L +GTSM+ P +
Sbjct: 256 FSNWGGNNT-----KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVM 298
Query: 383 SGLAALL-----RKAYPDWSPAAIKSALMTTAYNLD 413
+G++ALL ++ P A+++AL+ TA D
Sbjct: 299 TGISALLMSLQVQQGKP-VDAEAVRTALLKTAIPCD 333
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 21/81 (25%)
Query: 340 VIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL------RKAY 393
++APG +IL A G G T+ +SGTS + P VSG+AALL R
Sbjct: 198 ILAPGEDILGAKPG--GGTER-----------LSGTSFATPIVSGVAALLLSEQVRRGET 244
Query: 394 PDWSPAAIKSALMTTAYNLDN 414
PD P ++ L+ +A D+
Sbjct: 245 PD--PQKVRQLLLQSALPCDD 263
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 21/81 (25%)
Query: 340 VIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL------RKAY 393
++APG +IL A G G T+ +SGTS + P VSG+AALL R
Sbjct: 207 ILAPGEDILGAKPG--GGTER-----------LSGTSFATPIVSGVAALLLSEQVRRGET 253
Query: 394 PDWSPAAIKSALMTTAYNLDN 414
PD P ++ L+ +A D+
Sbjct: 254 PD--PQKVRQLLLQSALPCDD 272
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 23/96 (23%)
Query: 323 FSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHV 382
FS+ G N+ K ++APG IL A + P L +GTSM+ P +
Sbjct: 238 FSNWGGNNT-----KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVM 280
Query: 383 SGLAALL-----RKAYPDWSPAAIKSALMTTAYNLD 413
+G++ALL ++ P A+++AL+ TA D
Sbjct: 281 TGISALLMSLQVQQGKP-VDAEAVRTALLKTAIPCD 315
>pdb|3KRM|A Chain A, Imp1 Kh34
pdb|3KRM|B Chain B, Imp1 Kh34
pdb|3KRM|C Chain C, Imp1 Kh34
Length = 163
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 276 LIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGP 328
IPA VGAI G K + +LS++ +A+I + P P KV GP
Sbjct: 8 FIPAQAVGAIIGKKGQHIKQLSRFASASI----KIAPPETPDSKVRMVIITGP 56
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 8/44 (18%)
Query: 372 ISGTSMSCPHVSGLAALL------RKAYPDWSPAAIKSALMTTA 409
+SGTS + P VSG+AALL R PD P +K+AL+ +A
Sbjct: 220 LSGTSFATPIVSGVAALLLSLQIKRGEKPD--PQKVKNALLASA 261
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL 389
D++APGV I + + S + +SGT+M+ PHV+G AL+
Sbjct: 226 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALI 263
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL 389
D++APGV I + + S + +SGT+M+ PHV+G AL+
Sbjct: 226 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALI 263
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL 389
D++APGV I + + S + +SGT+M+ PHV+G AL+
Sbjct: 226 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALI 263
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 17/70 (24%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D++APGV I + + S + +SGT+M+ PHV+G AL+ D
Sbjct: 208 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAED--- 251
Query: 399 AAIKSALMTT 408
A K +L T
Sbjct: 252 -AFKRSLSET 260
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 21/81 (25%)
Query: 340 VIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL------RKAY 393
++APG +IL A G G T+ +SGT+ + P VSG+AALL R
Sbjct: 188 ILAPGEDILGAKPG--GGTER-----------LSGTAFATPIVSGVAALLLSEQVRRGET 234
Query: 394 PDWSPAAIKSALMTTAYNLDN 414
PD P ++ L+ +A D+
Sbjct: 235 PD--PQKVRQLLLQSALPCDD 253
>pdb|3J26|A Chain A, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|B Chain B, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|C Chain C, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|D Chain D, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|E Chain E, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|F Chain F, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|G Chain G, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|H Chain H, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|I Chain I, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|J Chain J, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|K Chain K, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|L Chain L, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|M Chain M, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
Length = 508
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 293 YIKLSQY---------PTATIVFRGTVISPSPPAPKVAAFSSRGPN----SLTAEILKPD 339
Y KLS+Y P A+ F+ V+ K+ F + N +L +I PD
Sbjct: 290 YFKLSRYTTQFQNTLAPNASSTFKSNVVQLDSIPRKLYLFVKQSDNVIYQNLNNQITTPD 349
Query: 340 VIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLA 386
V N+ W G DF++ +G + + +G+
Sbjct: 350 VFLQINNLNLTWNNQQGILSGASSQNLYDFSVQNGYNKTWSEFNGVT 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,582,100
Number of Sequences: 62578
Number of extensions: 720389
Number of successful extensions: 2023
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1647
Number of HSP's gapped (non-prelim): 219
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)