Query 045236
Match_columns 604
No_of_seqs 317 out of 2396
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.8E-43 3.9E-48 367.5 26.2 237 5-410 70-307 (307)
2 cd05562 Peptidases_S53_like Pe 100.0 1.2E-42 2.6E-47 353.9 21.6 228 40-445 43-274 (275)
3 cd07497 Peptidases_S8_14 Pepti 100.0 7.1E-42 1.5E-46 353.4 22.5 237 39-409 50-311 (311)
4 PTZ00262 subtilisin-like prote 100.0 4.8E-42 1E-46 372.6 20.7 231 36-450 369-618 (639)
5 cd07479 Peptidases_S8_SKI-1_li 100.0 6.3E-41 1.4E-45 338.5 22.7 204 40-413 40-254 (255)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 1.3E-40 2.7E-45 352.1 26.0 264 8-445 56-346 (346)
7 cd04857 Peptidases_S8_Tripepti 100.0 1.1E-40 2.3E-45 351.4 23.9 220 42-412 182-412 (412)
8 cd05561 Peptidases_S8_4 Peptid 100.0 3.5E-40 7.7E-45 330.0 23.5 204 40-436 31-239 (239)
9 cd07474 Peptidases_S8_subtilis 100.0 2.1E-39 4.5E-44 335.2 28.3 266 9-443 25-295 (295)
10 cd07493 Peptidases_S8_9 Peptid 100.0 7.7E-40 1.7E-44 332.5 23.0 220 9-410 24-261 (261)
11 cd07489 Peptidases_S8_5 Peptid 100.0 1.8E-39 3.8E-44 338.3 25.5 258 12-448 39-301 (312)
12 cd07478 Peptidases_S8_CspA-lik 100.0 2.4E-39 5.3E-44 350.9 26.5 338 40-436 73-455 (455)
13 cd07483 Peptidases_S8_Subtilis 100.0 1E-38 2.2E-43 328.7 23.8 202 39-410 79-291 (291)
14 cd07476 Peptidases_S8_thiazoli 100.0 2.1E-38 4.6E-43 321.7 22.7 204 40-414 45-254 (267)
15 cd07481 Peptidases_S8_Bacillop 100.0 3.4E-38 7.3E-43 320.9 22.8 203 38-410 45-264 (264)
16 cd04847 Peptidases_S8_Subtilis 100.0 2.8E-38 6E-43 326.1 21.1 230 41-410 34-291 (291)
17 cd07487 Peptidases_S8_1 Peptid 100.0 2.4E-37 5.2E-42 314.5 26.1 221 38-410 37-264 (264)
18 cd07490 Peptidases_S8_6 Peptid 100.0 6.1E-37 1.3E-41 309.9 24.9 235 11-410 19-254 (254)
19 cd07496 Peptidases_S8_13 Pepti 100.0 7.9E-36 1.7E-40 306.9 25.1 206 41-408 67-285 (285)
20 cd07498 Peptidases_S8_15 Pepti 100.0 5.3E-36 1.1E-40 300.9 22.3 206 40-408 35-242 (242)
21 PF00082 Peptidase_S8: Subtila 100.0 5.7E-37 1.2E-41 314.6 14.7 254 12-445 24-282 (282)
22 cd07485 Peptidases_S8_Fervidol 100.0 1E-35 2.2E-40 304.2 22.9 210 38-408 54-273 (273)
23 cd07484 Peptidases_S8_Thermita 100.0 1.8E-35 4E-40 300.2 24.1 212 10-412 47-259 (260)
24 cd07477 Peptidases_S8_Subtilis 100.0 2.8E-35 6E-40 293.0 23.3 193 39-408 34-229 (229)
25 cd04077 Peptidases_S8_PCSK9_Pr 100.0 4.8E-35 1E-39 296.3 23.7 190 41-411 59-255 (255)
26 cd07494 Peptidases_S8_10 Pepti 100.0 2.3E-35 5.1E-40 304.0 21.0 207 40-413 56-286 (298)
27 cd04842 Peptidases_S8_Kp43_pro 100.0 1.1E-34 2.4E-39 299.6 21.7 227 43-410 52-293 (293)
28 cd07473 Peptidases_S8_Subtilis 100.0 2.4E-34 5.3E-39 291.8 23.6 199 37-410 55-259 (259)
29 cd07482 Peptidases_S8_Lantibio 100.0 2.1E-34 4.6E-39 297.6 23.0 106 39-156 47-159 (294)
30 cd04843 Peptidases_S8_11 Pepti 100.0 2.6E-34 5.5E-39 293.0 19.2 205 41-410 47-277 (277)
31 cd07480 Peptidases_S8_12 Pepti 100.0 1.3E-33 2.7E-38 292.1 23.5 226 41-441 42-296 (297)
32 KOG1114 Tripeptidyl peptidase 100.0 1.2E-33 2.7E-38 306.0 22.9 357 43-596 308-688 (1304)
33 cd07491 Peptidases_S8_7 Peptid 100.0 7.4E-34 1.6E-38 285.0 19.0 136 11-173 22-170 (247)
34 cd07492 Peptidases_S8_8 Peptid 100.0 2.4E-33 5.2E-38 278.0 22.5 184 39-410 38-222 (222)
35 cd07488 Peptidases_S8_2 Peptid 100.0 1.9E-33 4.2E-38 281.3 15.6 197 40-409 32-247 (247)
36 KOG1153 Subtilisin-related pro 100.0 2.4E-33 5.2E-38 285.1 11.8 188 42-410 254-461 (501)
37 cd04848 Peptidases_S8_Autotran 100.0 2.8E-32 6.2E-37 277.1 19.5 204 40-410 41-267 (267)
38 cd04059 Peptidases_S8_Protein_ 100.0 5.7E-32 1.2E-36 280.0 16.4 198 43-410 82-297 (297)
39 cd00306 Peptidases_S8_S53 Pept 100.0 2.8E-27 6.2E-32 235.3 22.3 196 40-408 39-241 (241)
40 KOG4266 Subtilisin kexin isozy 99.9 6.5E-28 1.4E-32 251.7 10.9 223 40-446 233-466 (1033)
41 COG1404 AprE Subtilisin-like s 99.8 6.3E-19 1.4E-23 194.1 19.8 203 41-411 179-398 (508)
42 cd04056 Peptidases_S53 Peptida 99.7 1.1E-17 2.4E-22 177.4 14.7 102 71-177 81-199 (361)
43 cd02133 PA_C5a_like PA_C5a_lik 99.4 2.3E-12 5.1E-17 118.5 12.6 118 202-330 24-142 (143)
44 cd02120 PA_subtilisin_like PA_ 99.4 3.5E-12 7.6E-17 114.8 12.9 119 182-303 2-125 (126)
45 KOG3526 Subtilisin-like propro 99.3 1.6E-12 3.5E-17 130.3 2.5 97 367-466 376-475 (629)
46 cd04816 PA_SaNapH_like PA_SaNa 99.0 3.9E-09 8.5E-14 94.4 12.5 98 204-301 17-119 (122)
47 PF02225 PA: PA domain; Inter 98.9 2.6E-09 5.7E-14 91.9 7.4 91 204-294 6-101 (101)
48 cd02129 PA_hSPPL_like PA_hSPPL 98.8 1.9E-08 4.2E-13 88.5 9.7 91 204-296 20-114 (120)
49 cd02127 PA_hPAP21_like PA_hPAP 98.8 2.4E-08 5.1E-13 88.4 9.9 95 207-304 14-116 (118)
50 cd04818 PA_subtilisin_1 PA_sub 98.8 3.3E-08 7.2E-13 87.8 9.4 85 217-302 28-116 (118)
51 cd02122 PA_GRAIL_like PA _GRAI 98.8 3.3E-08 7.1E-13 90.0 9.4 87 217-303 45-137 (138)
52 cd00538 PA PA: Protease-associ 98.8 3.5E-08 7.6E-13 88.4 9.2 85 217-301 31-123 (126)
53 cd02130 PA_ScAPY_like PA_ScAPY 98.7 1.7E-07 3.7E-12 83.8 12.4 95 204-302 22-120 (122)
54 cd02126 PA_EDEM3_like PA_EDEM3 98.7 5.3E-08 1.1E-12 87.4 9.0 84 217-301 28-123 (126)
55 cd02125 PA_VSR PA_VSR: Proteas 98.7 1.7E-07 3.7E-12 84.1 10.8 86 217-302 23-125 (127)
56 cd04817 PA_VapT_like PA_VapT_l 98.6 1.6E-07 3.5E-12 85.0 9.5 87 205-297 37-134 (139)
57 cd02124 PA_PoS1_like PA_PoS1_l 98.6 5E-07 1.1E-11 81.3 12.2 84 216-300 41-125 (129)
58 cd02132 PA_GO-like PA_GO-like: 98.6 2E-07 4.2E-12 85.2 9.1 92 205-301 39-136 (139)
59 cd04813 PA_1 PA_1: Protease-as 98.6 2.3E-07 4.9E-12 82.0 8.4 79 217-297 28-112 (117)
60 cd02123 PA_C_RZF_like PA_C-RZF 98.5 5E-07 1.1E-11 83.9 9.1 83 217-299 51-142 (153)
61 cd04819 PA_2 PA_2: Protease-as 98.3 5.3E-06 1.2E-10 74.6 11.1 91 203-298 22-121 (127)
62 PF06280 DUF1034: Fn3-like dom 98.2 1.7E-05 3.6E-10 69.8 10.9 83 509-593 9-112 (112)
63 cd04815 PA_M28_2 PA_M28_2: Pro 97.7 0.00017 3.7E-09 65.5 8.0 77 225-301 34-131 (134)
64 cd02128 PA_TfR PA_TfR: Proteas 97.4 0.00051 1.1E-08 65.1 8.2 89 204-297 29-156 (183)
65 COG4934 Predicted protease [Po 97.4 0.0015 3.2E-08 76.6 13.2 98 71-171 286-395 (1174)
66 cd04814 PA_M28_1 PA_M28_1: Pro 97.1 0.0011 2.4E-08 60.4 6.7 62 204-265 20-100 (142)
67 cd04820 PA_M28_1_1 PA_M28_1_1: 97.0 0.002 4.3E-08 58.3 6.9 63 204-266 22-97 (137)
68 cd04822 PA_M28_1_3 PA_M28_1_3: 96.9 0.003 6.4E-08 58.3 7.1 63 204-266 20-101 (151)
69 KOG2442 Uncharacterized conser 96.6 0.0047 1E-07 65.5 7.4 79 226-304 91-175 (541)
70 PF14874 PapD-like: Flagellar- 96.6 0.058 1.3E-06 46.2 12.6 94 491-596 8-101 (102)
71 KOG3525 Subtilisin-like propro 96.3 0.008 1.7E-07 65.1 6.7 75 371-446 251-325 (431)
72 cd02121 PA_GCPII_like PA_GCPII 96.0 0.014 2.9E-07 57.4 6.4 57 204-265 45-106 (220)
73 cd02131 PA_hNAALADL2_like PA_h 95.9 0.011 2.5E-07 53.9 4.5 39 227-265 37-75 (153)
74 KOG3920 Uncharacterized conser 95.1 0.032 6.8E-07 50.5 4.6 101 205-308 65-175 (193)
75 KOG4628 Predicted E3 ubiquitin 94.6 0.083 1.8E-06 54.9 6.8 81 217-297 63-150 (348)
76 PF10633 NPCBM_assoc: NPCBM-as 93.7 0.31 6.7E-06 39.6 7.2 60 507-566 4-63 (78)
77 cd04821 PA_M28_1_2 PA_M28_1_2: 93.2 0.34 7.4E-06 45.1 7.5 61 204-264 22-102 (157)
78 PF11614 FixG_C: IG-like fold 88.6 10 0.00022 33.2 12.1 57 509-567 32-88 (118)
79 PF06030 DUF916: Bacterial pro 84.3 21 0.00045 31.7 11.7 72 506-582 25-119 (121)
80 COG1470 Predicted membrane pro 84.2 9 0.00019 41.4 10.6 72 507-582 396-468 (513)
81 PF07718 Coatamer_beta_C: Coat 70.8 36 0.00077 31.0 9.0 68 510-582 71-138 (140)
82 PF00345 PapD_N: Pili and flag 68.2 50 0.0011 28.9 9.6 68 509-582 15-89 (122)
83 COG1470 Predicted membrane pro 59.4 1.4E+02 0.003 32.7 12.1 59 507-567 283-347 (513)
84 PF00635 Motile_Sperm: MSP (Ma 57.0 57 0.0012 27.6 7.7 55 508-566 18-72 (109)
85 TIGR02745 ccoG_rdxA_fixG cytoc 54.8 47 0.001 36.3 8.1 56 509-566 347-402 (434)
86 smart00635 BID_2 Bacterial Ig- 53.3 40 0.00087 27.3 5.7 40 538-585 4-43 (81)
87 PF08821 CGGC: CGGC domain; I 46.6 1.1E+02 0.0024 26.5 7.6 45 74-120 31-76 (107)
88 PF02845 CUE: CUE domain; Int 44.4 24 0.00051 24.8 2.6 23 386-408 5-27 (42)
89 PF07705 CARDB: CARDB; InterP 44.3 1E+02 0.0022 25.2 7.2 55 507-564 18-72 (101)
90 KOG2018 Predicted dinucleotide 42.4 29 0.00063 35.7 3.8 77 73-150 137-245 (430)
91 PF02601 Exonuc_VII_L: Exonucl 37.3 98 0.0021 32.2 7.1 75 76-153 38-118 (319)
92 PF07610 DUF1573: Protein of u 36.6 96 0.0021 22.1 4.8 44 514-561 2-45 (45)
93 PRK15019 CsdA-binding activato 32.4 44 0.00096 30.7 3.1 33 370-403 77-109 (147)
94 TIGR03391 FeS_syn_CsdE cystein 31.2 48 0.001 30.1 3.1 34 370-404 72-105 (138)
95 PF00927 Transglut_C: Transglu 30.1 3.4E+02 0.0073 22.9 8.5 57 507-566 14-79 (107)
96 PF04255 DUF433: Protein of un 30.0 45 0.00099 25.0 2.3 40 367-406 9-54 (56)
97 PF08260 Kinin: Insect kinin p 29.4 25 0.00054 15.7 0.4 6 322-327 3-8 (8)
98 COG1570 XseA Exonuclease VII, 28.2 1.3E+02 0.0027 32.9 6.0 75 76-153 159-236 (440)
99 smart00546 CUE Domain that may 27.3 92 0.002 21.8 3.4 24 385-408 5-28 (43)
100 PRK09296 cysteine desufuration 27.0 63 0.0014 29.4 3.1 33 370-403 67-99 (138)
101 COG2166 sufE Cysteine desulfur 26.8 60 0.0013 29.7 2.8 32 370-402 72-103 (144)
102 PF13940 Ldr_toxin: Toxin Ldr, 26.2 54 0.0012 21.9 1.8 13 377-389 14-26 (35)
103 PF02657 SufE: Fe-S metabolism 25.5 72 0.0016 28.4 3.1 33 371-404 59-91 (125)
104 PRK00286 xseA exodeoxyribonucl 25.1 1.4E+02 0.003 32.6 6.0 74 77-153 160-235 (438)
105 PRK15098 beta-D-glucoside gluc 24.7 1.9E+02 0.0041 34.2 7.3 55 508-566 667-730 (765)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-43 Score=367.46 Aligned_cols=237 Identities=61% Similarity=0.961 Sum_probs=199.5
Q ss_pred CCCCCCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEE
Q 045236 5 FPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAV 84 (604)
Q Consensus 5 f~~~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ 84 (604)
|....||+||+|+|+|.++.....+ .+...+..+|.|..||||||||||||+...+....|...+.+.||||+|+|+.
T Consensus 70 ~~~~~~~~ki~g~~~~~~~~~~~~~--~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~ 147 (307)
T cd04852 70 FNPFSCNNKLIGARYFSDGYDAYGG--FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAV 147 (307)
T ss_pred cCccCcCCeEEEEEEcccchhhccC--cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEE
Confidence 3345699999999999987644322 23445577899999999999999999987766666666677899999999999
Q ss_pred EEeecC-CCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCC
Q 045236 85 YKICWS-PGCFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIA 163 (604)
Q Consensus 85 ~kv~~~-~g~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a 163 (604)
+|+++. ..+..+++++||++|++++++|||||||.. ......+.+..+++++.++|++||+||||+|+...+.++..
T Consensus 148 ~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~--~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~ 225 (307)
T cd04852 148 YKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIGGG--SPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVA 225 (307)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCC--CCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCC
Confidence 999987 458888999999999999999999999988 33456678888888999999999999999998888888899
Q ss_pred CceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchh
Q 045236 164 PWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNAR 243 (604)
Q Consensus 164 p~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~ 243 (604)
||+++|||.
T Consensus 226 ~~vi~Vga~----------------------------------------------------------------------- 234 (307)
T cd04852 226 PWVTTVAAS----------------------------------------------------------------------- 234 (307)
T ss_pred CCeEEEEec-----------------------------------------------------------------------
Confidence 999999972
Q ss_pred hhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccc
Q 045236 244 VEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAF 323 (604)
Q Consensus 244 ~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~f 323 (604)
.
T Consensus 235 -------------------------------------------------------------------------~------ 235 (307)
T cd04852 235 -------------------------------------------------------------------------T------ 235 (307)
T ss_pred -------------------------------------------------------------------------c------
Confidence 1
Q ss_pred cCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHH
Q 045236 324 SSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKS 403 (604)
Q Consensus 324 SS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks 403 (604)
+||||+|||.+|+++++.... .........|..++|||||||+|||++|||+|+||+|+|.|||+
T Consensus 236 ------------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~ 300 (307)
T cd04852 236 ------------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKS 300 (307)
T ss_pred ------------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 477999999999999875311 11122336899999999999999999999999999999999999
Q ss_pred HHHhccc
Q 045236 404 ALMTTAY 410 (604)
Q Consensus 404 ~L~~TA~ 410 (604)
+|++||+
T Consensus 301 ~L~~tA~ 307 (307)
T cd04852 301 ALMTTAY 307 (307)
T ss_pred HHHHhcC
Confidence 9999985
No 2
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.2e-42 Score=353.93 Aligned_cols=228 Identities=27% Similarity=0.296 Sum_probs=179.0
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcccC
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGA 119 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG~ 119 (604)
.+.|..|||||||||| .||||+|+|+.+|+. ...+++++||+||++.|++|||||||.
T Consensus 43 ~~~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~ 100 (275)
T cd05562 43 GGSGGGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGY 100 (275)
T ss_pred CCCCCCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccc
Confidence 4568899999999999 389999999999874 347889999999999999999999998
Q ss_pred CCCCCCC-cccHHHHHHHhhhcC-CcEEEEcCCCCCCCCC-CcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeec
Q 045236 120 SGYAPQY-DQDSIAIGSFGAAQH-GVVVSCSAGNSGPGPF-TATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLY 196 (604)
Q Consensus 120 ~~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~ 196 (604)
. ..++ ....+..++.++.++ |++||+||||+|+... ..+...|++|+|||.+.+.........+
T Consensus 101 ~--~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~----------- 167 (275)
T cd05562 101 L--NEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA----------- 167 (275)
T ss_pred c--CCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-----------
Confidence 7 3333 345678888888887 9999999999998543 3456889999999965432210000000
Q ss_pred cCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccc
Q 045236 197 AGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHL 276 (604)
Q Consensus 197 ~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ 276 (604)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCC-cEEecccCCC
Q 045236 277 IPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGV-NILAAWTGST 355 (604)
Q Consensus 277 ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~ 355 (604)
........+.|++|||+. ++.+||||+|||. .+.+.+..
T Consensus 168 ------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-- 207 (275)
T cd05562 168 ------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-- 207 (275)
T ss_pred ------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC--
Confidence 000012345688899987 6789999999975 44554433
Q ss_pred CCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCC
Q 045236 356 GPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGA 435 (604)
Q Consensus 356 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~ 435 (604)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++.. +..+..|||
T Consensus 208 -----------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~d~~~G~ 264 (275)
T cd05562 208 -----------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------PGYDNASGS 264 (275)
T ss_pred -----------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------CCCCCCcCc
Confidence 578999999999999999999999999999999999999999987742 234568999
Q ss_pred cccCccccCC
Q 045236 436 GHVDPNRALN 445 (604)
Q Consensus 436 G~id~~~A~~ 445 (604)
|+||+.+|++
T Consensus 265 G~vda~~Av~ 274 (275)
T cd05562 265 GLVDADRAVA 274 (275)
T ss_pred CcccHHHHhh
Confidence 9999999986
No 3
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.1e-42 Score=353.41 Aligned_cols=237 Identities=32% Similarity=0.346 Sum_probs=166.5
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCcccc-CCCceeeecCCCeEEEEEeecCCC-CCHHHHHH-------HHHHHH--H
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDY-ARGEARGMAVKARIAVYKICWSPG-CFDSDILA-------AMDQAI--A 107 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~-------aid~A~--~ 107 (604)
..+.|.+||||||||||||+.....+.+++ ....+.||||+|+|+.+|++...+ +....++. +++|.+ +
T Consensus 50 ~~~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 129 (311)
T cd07497 50 VIMYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGG 129 (311)
T ss_pred CCCCCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccC
Confidence 347899999999999999986433222221 123469999999999999997543 32233333 344433 6
Q ss_pred CCCcEEEEcccCCCCCCCC-----cccHHHHHHHhh-hcCCcEEEEcCCCCCCCCCC--cccCCCceEeeccCCCCCccc
Q 045236 108 DGVDVISLSVGASGYAPQY-----DQDSIAIGSFGA-AQHGVVVSCSAGNSGPGPFT--ATNIAPWILTVGASTIDREFP 179 (604)
Q Consensus 108 ~gvdVIn~SlG~~~~~~~~-----~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgAst~d~~~~ 179 (604)
+++||||||||... ..+ ..+..+.....+ .++||++|+||||+|+...+ .+..++++|+|||++.....+
T Consensus 130 ~~~~VIN~S~G~~~--~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~ 207 (311)
T cd07497 130 PRVDVISNSWGISN--FAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRP 207 (311)
T ss_pred CCceEEEecCCcCC--CCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccc
Confidence 79999999999862 211 112333333332 38999999999999986443 455789999999975321100
Q ss_pred eEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEE
Q 045236 180 ADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMI 259 (604)
Q Consensus 180 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i 259 (604)
.. .+.+
T Consensus 208 ~~-------------------------~~~~------------------------------------------------- 213 (311)
T cd07497 208 FY-------------------------LFGY------------------------------------------------- 213 (311)
T ss_pred hh-------------------------hhcc-------------------------------------------------
Confidence 00 0000
Q ss_pred EEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCc
Q 045236 260 LANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPD 339 (604)
Q Consensus 260 ~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPD 339 (604)
.... .+.++.||||||+. ++++|||
T Consensus 214 ----------------------------------------------------~~~~-~~~~~~fSs~Gp~~--~g~~kPd 238 (311)
T cd07497 214 ----------------------------------------------------LPGG-SGDVVSWSSRGPSI--AGDPKPD 238 (311)
T ss_pred ----------------------------------------------------ccCC-CCCccccccCCCCc--ccCCCCc
Confidence 0011 56789999999998 7899999
Q ss_pred eEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 045236 340 VIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYP------DWSPAAIKSALMTTA 409 (604)
Q Consensus 340 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P------~~sp~~Iks~L~~TA 409 (604)
|+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||.+|++||
T Consensus 239 v~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 239 LAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 9999999999877542100 011124799999999999999999999999886 689999999999997
No 4
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=4.8e-42 Score=372.59 Aligned_cols=231 Identities=19% Similarity=0.214 Sum_probs=177.2
Q ss_pred CCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEE
Q 045236 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVIS 114 (604)
Q Consensus 36 ~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn 114 (604)
++..+|.|.+||||||||||||...+. ..+.||||+|+|+.+|+++..+ +..+++++||+||++.|++|||
T Consensus 369 d~~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VIN 440 (639)
T PTZ00262 369 NNDGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMIN 440 (639)
T ss_pred CCCCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEE
Confidence 344578999999999999999986321 2258999999999999998766 7888999999999999999999
Q ss_pred EcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc--------------cc----CCCceEeeccCCCCC
Q 045236 115 LSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA--------------TN----IAPWILTVGASTIDR 176 (604)
Q Consensus 115 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--------------~~----~ap~vitVgAst~d~ 176 (604)
||||+.. ....+..++.+|.++|++||+||||+|+..... +. ..++||+|||...+.
T Consensus 441 mSlG~~~-----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~ 515 (639)
T PTZ00262 441 GSFSFDE-----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK 515 (639)
T ss_pred eccccCC-----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC
Confidence 9999762 235677888899999999999999998643211 11 134556665532110
Q ss_pred ccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCce
Q 045236 177 EFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGL 256 (604)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~ 256 (604)
.
T Consensus 516 ~------------------------------------------------------------------------------- 516 (639)
T PTZ00262 516 N------------------------------------------------------------------------------- 516 (639)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred EEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCcc
Q 045236 257 GMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEIL 336 (604)
Q Consensus 257 g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~l 336 (604)
. .-..+.||.+|. .
T Consensus 517 ----------------------------------------------------------~-~~s~s~~Snyg~-------~ 530 (639)
T PTZ00262 517 ----------------------------------------------------------N-QYSLSPNSFYSA-------K 530 (639)
T ss_pred ----------------------------------------------------------C-cccccccccCCC-------C
Confidence 0 111234555542 2
Q ss_pred CCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCC
Q 045236 337 KPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSG 416 (604)
Q Consensus 337 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~ 416 (604)
++||+|||++|+++++. +.|..++|||||||||||+||||++++|+|++.||+++|++||.++...
T Consensus 531 ~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~- 596 (639)
T PTZ00262 531 YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL- 596 (639)
T ss_pred cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC-
Confidence 45999999999999876 5799999999999999999999999999999999999999999876421
Q ss_pred CccccCCCCCCCCCCCCCCcccCccccCCCCcee
Q 045236 417 ENIKDLASGEESTPFIHGAGHVDPNRALNPGLVY 450 (604)
Q Consensus 417 ~~~~~~~~~~~~~~~~~G~G~id~~~A~~~glv~ 450 (604)
.....| +|+||+.+|++..+-+
T Consensus 597 -----------~n~~~w-gG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -----------KNKVKW-GGYLDIHHAVNLAIAS 618 (639)
T ss_pred -----------CCcccc-CcEEcHHHHHHHHHhc
Confidence 111233 3899999999865533
No 5
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=6.3e-41 Score=338.52 Aligned_cols=204 Identities=28% Similarity=0.386 Sum_probs=170.1
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEccc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSVG 118 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG 118 (604)
++.|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..++++++|++|+++++||||||||
T Consensus 40 ~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G 108 (255)
T cd07479 40 TLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIG 108 (255)
T ss_pred CCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeecc
Confidence 456889999999999999742 148999999999999998766 56677899999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCC--cccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeec
Q 045236 119 ASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT--ATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLY 196 (604)
Q Consensus 119 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~ 196 (604)
... +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||...
T Consensus 109 ~~~----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~---------------------- 162 (255)
T cd07479 109 GPD----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF---------------------- 162 (255)
T ss_pred CCC----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc----------------------
Confidence 862 334566667778889999999999999975443 3456788889887321
Q ss_pred cCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccc
Q 045236 197 AGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHL 276 (604)
Q Consensus 197 ~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ 276 (604)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCC----CCCCccCCceEeCCCcEEeccc
Q 045236 277 IPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNS----LTAEILKPDVIAPGVNILAAWT 352 (604)
Q Consensus 277 ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~----~~~~~lKPDI~APG~~I~sa~~ 352 (604)
.+.++.|||+|++. ...+++||||.|||.+|+++..
T Consensus 163 ----------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~ 202 (255)
T cd07479 163 ----------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKL 202 (255)
T ss_pred ----------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeecccc
Confidence 44568899999652 1257889999999999998765
Q ss_pred CCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCC----CCCHHHHHHHHHhccccCC
Q 045236 353 GSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYP----DWSPAAIKSALMTTAYNLD 413 (604)
Q Consensus 353 ~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P----~~sp~~Iks~L~~TA~~~~ 413 (604)
. ..|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 203 ~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 203 K-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred C-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 4 5788999999999999999999999998 7999999999999999864
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.3e-40 Score=352.06 Aligned_cols=264 Identities=29% Similarity=0.392 Sum_probs=202.6
Q ss_pred CCCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEe
Q 045236 8 SACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKI 87 (604)
Q Consensus 8 ~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv 87 (604)
..+|+||++.++|.++... .....|..+|||||||||+|...... ....+.||||+|+|+.+|+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v 119 (346)
T cd07475 56 KYYNEKVPFAYNYADNNDD-----------ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKV 119 (346)
T ss_pred cccccCCCeeEcCCCCCCc-----------cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEe
Confidence 3578999999999976311 11145789999999999999875322 1234699999999999999
Q ss_pred ecC--C-CCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc-----
Q 045236 88 CWS--P-GCFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA----- 159 (604)
Q Consensus 88 ~~~--~-g~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----- 159 (604)
+.. . .+...++++|++++++.|++|||||||... ........+..++.++.++|++||+||||+|......
T Consensus 120 ~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~-~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~ 198 (346)
T cd07475 120 FSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTA-GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLA 198 (346)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC-CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCccc
Confidence 973 2 367788999999999999999999999884 2224456778888888999999999999998653221
Q ss_pred -----------ccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCC
Q 045236 160 -----------TNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSK 228 (604)
Q Consensus 160 -----------~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~ 228 (604)
+...+++|+|++...
T Consensus 199 ~~~~~~~~~~~p~~~~~~i~Vga~~~------------------------------------------------------ 224 (346)
T cd07475 199 TNNPDTGTVGSPATADDVLTVASANK------------------------------------------------------ 224 (346)
T ss_pred ccCCCcceecCCccCCCceEEeeccc------------------------------------------------------
Confidence 112344444444210
Q ss_pred ccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeee
Q 045236 229 VQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRG 308 (604)
Q Consensus 229 ~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 308 (604)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHH
Q 045236 309 TVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAAL 388 (604)
Q Consensus 309 ~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 388 (604)
...... ...++.||+|||+. ..++||||+|||.+|+++... +.|..++|||||||+|||++||
T Consensus 225 -~~~~~~-~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aAL 287 (346)
T cd07475 225 -KVPNPN-GGQMSGFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASAL 287 (346)
T ss_pred -ccCCCC-CCccCCCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHH
Confidence 000011 56778999999998 689999999999999998765 5789999999999999999999
Q ss_pred HHHh----CCCCCHHH----HHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 389 LRKA----YPDWSPAA----IKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 389 l~q~----~P~~sp~~----Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
|+|+ +|.|++.+ ||.+|++||.+..... .....+.+..+|+|+||+.+|++
T Consensus 288 l~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~------~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 288 VKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE------DTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccC------CCCccCCccccCcchhcHHHhhC
Confidence 9997 79999876 7889999998532111 11456778899999999999985
No 7
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.1e-40 Score=351.43 Aligned_cols=220 Identities=30% Similarity=0.336 Sum_probs=166.0
Q ss_pred CCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC---CCHHHHHHHHHHHHHCCCcEEEEccc
Q 045236 42 RDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG---CFDSDILAAMDQAIADGVDVISLSVG 118 (604)
Q Consensus 42 ~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~dil~aid~A~~~gvdVIn~SlG 118 (604)
.|+.||||||||||||+..+ ...+.|+||+|+|+.+|+++... +...++++||++|++.|+||||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 58899999999999998532 22358999999999999986532 23457899999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHhh-hcCCcEEEEcCCCCCCCCCCcc--c-CCCceEeeccCCCCCccceEEEcCCCcEEEeee
Q 045236 119 ASGYAPQYDQDSIAIGSFGA-AQHGVVVSCSAGNSGPGPFTAT--N-IAPWILTVGASTIDREFPADAILGDGRIFGGVS 194 (604)
Q Consensus 119 ~~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~~--~-~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~ 194 (604)
... ..+. ...+...+.++ .++||++|+||||+|+...+.. . .++.+|+|||..........
T Consensus 254 ~~~-~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------- 318 (412)
T cd04857 254 EAT-HWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------- 318 (412)
T ss_pred cCC-CCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc-------------
Confidence 873 2121 22344444443 4789999999999998765543 2 46899999985321100000
Q ss_pred eccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccc
Q 045236 195 LYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADS 274 (604)
Q Consensus 195 ~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~ 274 (604)
|.
T Consensus 319 -----------y~------------------------------------------------------------------- 320 (412)
T cd04857 319 -----------YS------------------------------------------------------------------- 320 (412)
T ss_pred -----------cc-------------------------------------------------------------------
Confidence 00
Q ss_pred cccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCC
Q 045236 275 HLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGS 354 (604)
Q Consensus 275 ~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 354 (604)
...+. .+.++.||||||+. ++.+||||+|||..|++.-...
T Consensus 321 ------------------------------------~~~~~-~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~ 361 (412)
T cd04857 321 ------------------------------------LREKL-PGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT 361 (412)
T ss_pred ------------------------------------ccccc-CCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC
Confidence 00011 45678999999998 8999999999999998752211
Q ss_pred CCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccC
Q 045236 355 TGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAAIKSALMTTAYNL 412 (604)
Q Consensus 355 ~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~ 412 (604)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 -----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 -----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 15789999999999999999999975 579999999999999999864
No 8
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.5e-40 Score=330.00 Aligned_cols=204 Identities=27% Similarity=0.379 Sum_probs=171.6
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC----CCHHHHHHHHHHHHHCCCcEEEE
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG----CFDSDILAAMDQAIADGVDVISL 115 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~dil~aid~A~~~gvdVIn~ 115 (604)
.+.|.++|||||||||+|+... . .|+||+|+|+.+|++...+ +...++++||+||++.|++||||
T Consensus 31 ~~~~~~~HGT~vAgiia~~~~~---------~--~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~ 99 (239)
T cd05561 31 GAPAPSAHGTAVASLLAGAGAQ---------R--PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNI 99 (239)
T ss_pred CCCCCCCCHHHHHHHHhCCCCC---------C--cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEe
Confidence 3568899999999999998632 1 6999999999999998642 67788999999999999999999
Q ss_pred cccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC-CCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeee
Q 045236 116 SVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP-FTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVS 194 (604)
Q Consensus 116 SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~ 194 (604)
|||.. . ...+..++.++.++|++||+||||+|+.. ..++...+++|+|++.+.
T Consensus 100 S~g~~--~----~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------- 153 (239)
T cd05561 100 SLAGP--P----NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------- 153 (239)
T ss_pred CCCCC--C----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC--------------------
Confidence 99976 2 35677788889999999999999999753 345667788888887321
Q ss_pred eccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccc
Q 045236 195 LYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADS 274 (604)
Q Consensus 195 ~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~ 274 (604)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCC
Q 045236 275 HLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGS 354 (604)
Q Consensus 275 ~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 354 (604)
.+.++.||++|+.. ||.|||.+|+++.+.
T Consensus 154 ------------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~- 182 (239)
T cd05561 154 ------------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPG- 182 (239)
T ss_pred ------------------------------------------CCCccccCCCCCcc--------eEEccccceecccCC-
Confidence 34557899999876 999999999997665
Q ss_pred CCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCC
Q 045236 355 TGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHG 434 (604)
Q Consensus 355 ~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G 434 (604)
+.|..++|||||||||||++|||+|++| ++++|||++|++||+++.. +..+..||
T Consensus 183 ------------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~------------~~~d~~~G 237 (239)
T cd05561 183 ------------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP------------PGRDPVFG 237 (239)
T ss_pred ------------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC------------CCcCCCcC
Confidence 5799999999999999999999999999 9999999999999997743 33446889
Q ss_pred Cc
Q 045236 435 AG 436 (604)
Q Consensus 435 ~G 436 (604)
||
T Consensus 238 ~G 239 (239)
T cd05561 238 YG 239 (239)
T ss_pred CC
Confidence 87
No 9
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-39 Score=335.20 Aligned_cols=266 Identities=44% Similarity=0.591 Sum_probs=202.6
Q ss_pred CCCCceEEEEeccCCcccccCCCC-CCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEe
Q 045236 9 ACNKKIIGARAFYRGYESYMERPI-DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKI 87 (604)
Q Consensus 9 ~cn~Kiigar~~~~~~~~~~~~~~-~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv 87 (604)
+.++++++.++|.........+.. ..........|..||||||||+|+|...+ ...+.|+||+|+|+.+|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~ 96 (295)
T cd07474 25 FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKV 96 (295)
T ss_pred CCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEe
Confidence 456889999999875322111000 00011123557899999999999998643 123589999999999999
Q ss_pred ecCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc--ccCCC
Q 045236 88 CWSPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA--TNIAP 164 (604)
Q Consensus 88 ~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap 164 (604)
+...+ +...++++||+++++++++|||||||... . ...+.+..++.++.++|+++|+||||+|...... +...+
T Consensus 97 ~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~ 173 (295)
T cd07474 97 LGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAP 173 (295)
T ss_pred ecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCC
Confidence 97444 77888999999999999999999999872 2 2456788888899999999999999998765443 55788
Q ss_pred ceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhh
Q 045236 165 WILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARV 244 (604)
Q Consensus 165 ~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~ 244 (604)
++|+||++.....
T Consensus 174 ~~i~Vga~~~~~~------------------------------------------------------------------- 186 (295)
T cd07474 174 SAITVGASTVADV------------------------------------------------------------------- 186 (295)
T ss_pred CeEEEeeeeccCc-------------------------------------------------------------------
Confidence 9999998531000
Q ss_pred hHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccccc
Q 045236 245 EKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFS 324 (604)
Q Consensus 245 ~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fS 324 (604)
.. ......|+
T Consensus 187 ---------------------------------------------------------------------~~-~~~~~~~~ 196 (295)
T cd07474 187 ---------------------------------------------------------------------AE-ADTVGPSS 196 (295)
T ss_pred ---------------------------------------------------------------------CC-CCceeccC
Confidence 00 22233444
Q ss_pred CC-CCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHH
Q 045236 325 SR-GPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKS 403 (604)
Q Consensus 325 S~-GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks 403 (604)
++ |++. ...+||||+|||.+|+++++... ..|..++|||||||+|||++|||+|++|+|++++||+
T Consensus 197 s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~-----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~ 263 (295)
T cd07474 197 SRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG-----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKA 263 (295)
T ss_pred CCCCCCC--CCCcCCCEECCcCceEeeccCCC-----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 44 5554 67999999999999999987631 5789999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCcccc
Q 045236 404 ALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRA 443 (604)
Q Consensus 404 ~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A 443 (604)
+|++||++....+ ....++..+|+|+||+.+|
T Consensus 264 ~L~~tA~~~~~~~--------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 264 ALMNTAKPLYDSD--------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHhhCcccccCC--------CCcCChhccCcceeccccC
Confidence 9999999876443 2223557899999999987
No 10
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.7e-40 Score=332.46 Aligned_cols=220 Identities=33% Similarity=0.391 Sum_probs=180.6
Q ss_pred CCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEee
Q 045236 9 ACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKIC 88 (604)
Q Consensus 9 ~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~ 88 (604)
.+|.+|++.++|.+... .+ ..|.+||||||||||+|+.. +.+.||||+|+|+.+|+.
T Consensus 24 ~~~~~i~~~~~~~~~~~----------~~---~~~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~ 80 (261)
T cd07493 24 FKNLRILGEYDFVDNSN----------NT---NYTDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTE 80 (261)
T ss_pred ccCCceeeeecCccCCC----------CC---CCCCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEec
Confidence 37899999999987521 10 36889999999999999852 235899999999999987
Q ss_pred cCCC---CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCc------------ccHHHHHHHhhhcCCcEEEEcCCCCC
Q 045236 89 WSPG---CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYD------------QDSIAIGSFGAAQHGVVVSCSAGNSG 153 (604)
Q Consensus 89 ~~~g---~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~G 153 (604)
.... ....++++|+++|.+.|++|||||||... .... ...+..++..+.++|+++|+||||+|
T Consensus 81 ~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~--~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g 158 (261)
T cd07493 81 DVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTT--FDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEG 158 (261)
T ss_pred ccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCC--CCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCC
Confidence 5432 34556889999999999999999999873 2111 13567788888999999999999999
Q ss_pred CC---CCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCcc
Q 045236 154 PG---PFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQ 230 (604)
Q Consensus 154 ~~---~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~ 230 (604)
.. ....+...+++|+|||...
T Consensus 159 ~~~~~~~~~Pa~~~~vi~Vga~~~-------------------------------------------------------- 182 (261)
T cd07493 159 STQWKGIGAPADAENVLSVGAVDA-------------------------------------------------------- 182 (261)
T ss_pred CCCCCcccCcccCCceEEEEEecc--------------------------------------------------------
Confidence 76 3455667889999997321
Q ss_pred ccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeee
Q 045236 231 GKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTV 310 (604)
Q Consensus 231 gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~ 310 (604)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHH
Q 045236 311 ISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLR 390 (604)
Q Consensus 311 ~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~ 390 (604)
.+.++.||++||.. ++++||||+|||.+|++.... +.|..++|||||||||||++|||+
T Consensus 183 ------~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~ 241 (261)
T cd07493 183 ------NGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLW 241 (261)
T ss_pred ------CCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHH
Confidence 34567899999987 789999999999999985443 578999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHhccc
Q 045236 391 KAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 391 q~~P~~sp~~Iks~L~~TA~ 410 (604)
|++|+|++.|||++|++||+
T Consensus 242 ~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 242 QAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred HHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999984
No 11
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-39 Score=338.32 Aligned_cols=258 Identities=32% Similarity=0.435 Sum_probs=203.8
Q ss_pred CceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCC
Q 045236 12 KKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91 (604)
Q Consensus 12 ~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~ 91 (604)
.|+.+.++|...... . .+...+..+|.|..||||||||||+|+..+ . .+.||||+|+|+.+|++...
T Consensus 39 ~~~~~~~d~~~~~~~--~--~~~~~~~~~~~d~~gHGT~vAgiia~~~~~----~-----~~~GiAp~a~i~~~~v~~~~ 105 (312)
T cd07489 39 CKVAGGYDFVGDDYD--G--TNPPVPDDDPMDCQGHGTHVAGIIAANPNA----Y-----GFTGVAPEATLGAYRVFGCS 105 (312)
T ss_pred ceeccccccCCcccc--c--ccCCCCCCCCCCCCCcHHHHHHHHhcCCCC----C-----ceEEECCCCEEEEEEeecCC
Confidence 356666777643211 0 123455667889999999999999998743 2 24899999999999999865
Q ss_pred C-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCC---CcccCCCceE
Q 045236 92 G-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF---TATNIAPWIL 167 (604)
Q Consensus 92 g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vi 167 (604)
+ ...+.++++|++|++++++|||+|||.. . .+..+.+...+.++.++|+++|+||||+|.... ..+...+++|
T Consensus 106 ~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~--~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi 182 (312)
T cd07489 106 GSTTEDTIIAAFLRAYEDGADVITASLGGP--S-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVI 182 (312)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEeCCCcC--C-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeE
Confidence 5 5667789999999999999999999987 2 344577888888888999999999999986532 2345667788
Q ss_pred eeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHH
Q 045236 168 TVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKG 247 (604)
Q Consensus 168 tVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~ 247 (604)
+||+.+
T Consensus 183 ~Vga~~-------------------------------------------------------------------------- 188 (312)
T cd07489 183 AVASVD-------------------------------------------------------------------------- 188 (312)
T ss_pred EEEEec--------------------------------------------------------------------------
Confidence 887621
Q ss_pred HHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCC
Q 045236 248 AAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRG 327 (604)
Q Consensus 248 ~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~G 327 (604)
+.||++|
T Consensus 189 -------------------------------------------------------------------------~~~s~~g 195 (312)
T cd07489 189 -------------------------------------------------------------------------SYFSSWG 195 (312)
T ss_pred -------------------------------------------------------------------------CCccCCC
Confidence 3688999
Q ss_pred CCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhC-CCCCHHHHHHHHH
Q 045236 328 PNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAY-PDWSPAAIKSALM 406 (604)
Q Consensus 328 P~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-P~~sp~~Iks~L~ 406 (604)
|+. +...||||+|||.+++++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|+
T Consensus 196 ~~~--~~~~kpdv~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~ 262 (312)
T cd07489 196 PTN--ELYLKPDVAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLA 262 (312)
T ss_pred CCC--CCCcCccEEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 998 57899999999999999987642 368999999999999999999999999 9999999999999
Q ss_pred hccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCCCc
Q 045236 407 TTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGL 448 (604)
Q Consensus 407 ~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~gl 448 (604)
+||......+..... ..+++...+|+|+||+.+|++..-
T Consensus 263 ~ta~~~~~~~~~~~~---~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 263 STAKPLPWSDGTSAL---PDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred HhCccccccCCCccc---cCCCCHhhcCcceeeHHHHhcCCc
Confidence 999987543221110 114667899999999999999543
No 12
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=2.4e-39 Score=350.89 Aligned_cols=338 Identities=25% Similarity=0.257 Sum_probs=199.2
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-----------CCHHHHHHHHHHHHHC
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-----------CFDSDILAAMDQAIAD 108 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~dil~aid~A~~~ 108 (604)
..+|.+||||||||||||+..++ ..+.||||+|+|+++|++...+ +..+++++||+|+++.
T Consensus 73 ~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~ 144 (455)
T cd07478 73 PSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDK 144 (455)
T ss_pred cCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHH
Confidence 35689999999999999997532 2358999999999999998765 4678999999999874
Q ss_pred -----CCcEEEEcccCCCCCCCCcccHHHHHHHhhhcC-CcEEEEcCCCCCCCCCCcccC-----CCc--eEeeccCCCC
Q 045236 109 -----GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQH-GVVVSCSAGNSGPGPFTATNI-----APW--ILTVGASTID 175 (604)
Q Consensus 109 -----gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-----ap~--vitVgAst~d 175 (604)
.++|||||||... +.+...+.++.++..+.++ |++||+||||+|....+.... ..- -+.|+. .+
T Consensus 145 a~~~~~p~VInlSlG~~~-g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~--~~ 221 (455)
T cd07478 145 ALELNKPLVINISLGTNF-GSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGE--GE 221 (455)
T ss_pred HHHhCCCeEEEEccCcCC-CCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECC--CC
Confidence 4679999999874 4455667888888887765 999999999999754433221 000 122332 11
Q ss_pred CccceEEEcCCCcEEEeeeeccCCC-C------C--CceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhH
Q 045236 176 REFPADAILGDGRIFGGVSLYAGES-L------P--DFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEK 246 (604)
Q Consensus 176 ~~~~~~~~~~~~~~~~g~~~~~~~~-~------~--~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~ 246 (604)
..+.-.++......+.-.-+.|.-. . . ...+.+.+... ..|-.. ..+....|.-.+.-+
T Consensus 222 ~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t---~i~v~y-~~~~~~~g~~~i~i~-------- 289 (455)
T cd07478 222 KGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGT---TVYVYY-YLPEPYTGDQLIFIR-------- 289 (455)
T ss_pred cceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCe---EEEEEE-cCCCCCCCCeEEEEE--------
Confidence 2222222222211111111111000 0 0 00011111100 001000 001111111111111
Q ss_pred HHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeee------ecCCCCCCCcc
Q 045236 247 GAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGT------VISPSPPAPKV 320 (604)
Q Consensus 247 ~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~ 320 (604)
..+ ...|---+.+..... .......|+|.-.+...+..++ +. ++..+++.+.+ +-.++...+.+
T Consensus 290 ~~~-~~~GiW~i~~~~~~~---~~g~~~~Wlp~~~~~~~~t~f~----~~--~~~~tit~Pa~~~~vitVga~~~~~~~~ 359 (455)
T cd07478 290 FKN-IKPGIWKIRLTGVSI---TDGRFDAWLPSRGLLSENTRFL----EP--DPYTTLTIPGTARSVITVGAYNQNNNSI 359 (455)
T ss_pred ccC-CCccceEEEEEeccC---CCceEEEEecCcCcCCCCCEee----cC--CCCceEecCCCCCCcEEEEEEeCCCCcc
Confidence 001 011111111111110 0001123455433332222222 11 12223333221 11222214568
Q ss_pred ccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhC------C
Q 045236 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAY------P 394 (604)
Q Consensus 321 a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~------P 394 (604)
+.||||||+. ++++||||+|||++|+++++. +.|..++|||||||||||++|||+|.+ |
T Consensus 360 ~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p 424 (455)
T cd07478 360 AIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDP 424 (455)
T ss_pred cCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCC
Confidence 9999999998 789999999999999999986 589999999999999999999999965 5
Q ss_pred CCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCc
Q 045236 395 DWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAG 436 (604)
Q Consensus 395 ~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 436 (604)
.|++++||++|++||+++. +..+++.+||||
T Consensus 425 ~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 425 YLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred CCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 6799999999999999875 235678899998
No 13
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1e-38 Score=328.73 Aligned_cols=202 Identities=30% Similarity=0.402 Sum_probs=160.4
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEccc
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVG 118 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG 118 (604)
..|.|..||||||||||+|...+. .| +.||||+|+|+.+|++........++++||++|++.|++|||||||
T Consensus 79 ~~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G 150 (291)
T cd07483 79 NGPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFG 150 (291)
T ss_pred CCCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 446688999999999999986322 22 4899999999999998765567788999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc---c--------cCCCceEeeccCCCCCccceEEEcCCC
Q 045236 119 ASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA---T--------NIAPWILTVGASTIDREFPADAILGDG 187 (604)
Q Consensus 119 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~ap~vitVgAst~d~~~~~~~~~~~~ 187 (604)
.. ... ....+..++.++.++|+++|+||||+|...... + ...+.+|+||+....
T Consensus 151 ~~--~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------------ 215 (291)
T cd07483 151 KS--FSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------------ 215 (291)
T ss_pred CC--CCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc------------
Confidence 76 222 235677778888999999999999998543211 1 122445555542110
Q ss_pred cEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCC
Q 045236 188 RIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESG 267 (604)
Q Consensus 188 ~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~ 267 (604)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcE
Q 045236 268 EELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNI 347 (604)
Q Consensus 268 ~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 347 (604)
.. ...++.||++|+. +|||.|||.+|
T Consensus 216 ----------------------------------------------~~-~~~~~~~Sn~G~~-------~vdi~APG~~i 241 (291)
T cd07483 216 ----------------------------------------------YE-NNLVANFSNYGKK-------NVDVFAPGERI 241 (291)
T ss_pred ----------------------------------------------CC-cccccccCCCCCC-------ceEEEeCCCCe
Confidence 00 2346789999974 46999999999
Q ss_pred EecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 348 LAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 348 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 242 ~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 242 YSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred EeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999775 57999999999999999999999999999999999999999984
No 14
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=2.1e-38 Score=321.72 Aligned_cols=204 Identities=30% Similarity=0.339 Sum_probs=172.8
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC--CCHHHHHHHHHHHHHCCCcEEEEcc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG--CFDSDILAAMDQAIADGVDVISLSV 117 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~dil~aid~A~~~gvdVIn~Sl 117 (604)
+..|..||||||||||+|+... .+.||||+|+|+.+|++...+ +...++++||++|++.|+|||||||
T Consensus 45 ~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~ 114 (267)
T cd07476 45 QDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISG 114 (267)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 4567899999999999987521 248999999999999987654 4467899999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeecc
Q 045236 118 GASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYA 197 (604)
Q Consensus 118 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~ 197 (604)
|... ........+..++.++.++|++||+||||+|......+...+++|+|||...
T Consensus 115 G~~~-~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~----------------------- 170 (267)
T cd07476 115 GRLT-QTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD----------------------- 170 (267)
T ss_pred CcCC-CCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC-----------------------
Confidence 9763 2233456778888889999999999999999877777888899999997421
Q ss_pred CCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccccccc
Q 045236 198 GESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLI 277 (604)
Q Consensus 198 ~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~i 277 (604)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCC
Q 045236 278 PATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGP 357 (604)
Q Consensus 278 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 357 (604)
.+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 171 ---------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~---- 202 (267)
T cd07476 171 ---------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG---- 202 (267)
T ss_pred ---------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC----
Confidence 23446799999764 388999999999998876
Q ss_pred CCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCC----CCHHHHHHHHHhccccCCC
Q 045236 358 TDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPD----WSPAAIKSALMTTAYNLDN 414 (604)
Q Consensus 358 ~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~----~sp~~Iks~L~~TA~~~~~ 414 (604)
+.|..++|||||||||||++|||++++|. ++|++||++|++||+++..
T Consensus 203 ---------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 203 ---------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred ---------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 57999999999999999999999999887 9999999999999998854
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=3.4e-38 Score=320.92 Aligned_cols=203 Identities=36% Similarity=0.446 Sum_probs=172.1
Q ss_pred CCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHH----------
Q 045236 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIA---------- 107 (604)
Q Consensus 38 ~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~---------- 107 (604)
...|.|..||||||||||+|.... +...||||+|+|+.+|++...++...+++++++++++
T Consensus 45 ~~~~~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (264)
T cd07481 45 TPLPYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPAD 115 (264)
T ss_pred CCCCCCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccc
Confidence 456788999999999999987532 2238999999999999998877888899999999975
Q ss_pred --CCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCC---cccCCCceEeeccCCCCCccceEE
Q 045236 108 --DGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT---ATNIAPWILTVGASTIDREFPADA 182 (604)
Q Consensus 108 --~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVgAst~d~~~~~~~ 182 (604)
.|++|||||||... . ....+..++..+.++|++||+||||+|..... .+...+++|+||+.+.
T Consensus 116 ~~~~~~Iin~S~G~~~--~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~-------- 183 (264)
T cd07481 116 PDLAPDVINNSWGGPS--G--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR-------- 183 (264)
T ss_pred cccCCeEEEeCCCcCC--C--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC--------
Confidence 78999999999883 2 34556666777788999999999999865432 4567788888887321
Q ss_pred EcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEc
Q 045236 183 ILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILAN 262 (604)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~ 262 (604)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEe
Q 045236 263 TDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIA 342 (604)
Q Consensus 263 ~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~A 342 (604)
.+.++.||++||.. .+++||||+|
T Consensus 184 ------------------------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~A 207 (264)
T cd07481 184 ------------------------------------------------------NDVLADFSSRGPST--YGRIKPDISA 207 (264)
T ss_pred ------------------------------------------------------CCCCccccCCCCCC--CCCcCceEEE
Confidence 44567899999998 5899999999
Q ss_pred CCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 045236 343 PGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPD--WSPAAIKSALMTTAY 410 (604)
Q Consensus 343 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~--~sp~~Iks~L~~TA~ 410 (604)
||.+|+++++. +.|..++|||||||+|||++|||+|++|+ +++.|||++|++||+
T Consensus 208 pG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 208 PGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999999876 57899999999999999999999999999 999999999999985
No 16
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-38 Score=326.10 Aligned_cols=230 Identities=29% Similarity=0.306 Sum_probs=167.5
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-----CCHHHHHHHHHHHHHCC---CcE
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-----CFDSDILAAMDQAIADG---VDV 112 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~dil~aid~A~~~g---vdV 112 (604)
+.|..||||||||||++.... .....|+||+|+|+.+|++...+ ....++++||++|++.+ ++|
T Consensus 34 ~~d~~gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~V 105 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRV 105 (291)
T ss_pred cCCCCCChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeE
Confidence 679999999999999976532 12247999999999999998764 45677899999999853 599
Q ss_pred EEEcccCCCCCCCCcc--cHHHHHHHh-hhcCCcEEEEcCCCCCCCCCC------------cccCCCceEeeccCCCCCc
Q 045236 113 ISLSVGASGYAPQYDQ--DSIAIGSFG-AAQHGVVVSCSAGNSGPGPFT------------ATNIAPWILTVGASTIDRE 177 (604)
Q Consensus 113 In~SlG~~~~~~~~~~--~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~------------~~~~ap~vitVgAst~d~~ 177 (604)
||||||... ..... ..+..++.+ +.++|++||+||||+|..... .+..++++|+|||.+.+..
T Consensus 106 iN~SlG~~~--~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~ 183 (291)
T cd04847 106 FNLSLGSPL--PIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDD 183 (291)
T ss_pred EEEecCCCC--CccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCcc
Confidence 999999873 22211 244444443 458999999999999976543 2446789999998654332
Q ss_pred cceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceE
Q 045236 178 FPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLG 257 (604)
Q Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g 257 (604)
.......
T Consensus 184 ~~~~s~~------------------------------------------------------------------------- 190 (291)
T cd04847 184 ITDRARY------------------------------------------------------------------------- 190 (291)
T ss_pred CCCcccc-------------------------------------------------------------------------
Confidence 1000000
Q ss_pred EEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccC
Q 045236 258 MILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILK 337 (604)
Q Consensus 258 ~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lK 337 (604)
+... ....+.||||||.. ++.+|
T Consensus 191 ------------------------------------------------------~~~~-~~~~~~fs~~Gp~~--~~~~K 213 (291)
T cd04847 191 ------------------------------------------------------SAVG-PAPAGATTSSGPGS--PGPIK 213 (291)
T ss_pred ------------------------------------------------------cccc-cccCCCccccCCCC--CCCcC
Confidence 0000 11223499999998 79999
Q ss_pred CceEeCCCcEEecccCCCCCC-----CCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 338 PDVIAPGVNILAAWTGSTGPT-----DLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 338 PDI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
|||+|||++|++..+...... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 214 PDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 214 PDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999988654311000 0001122368999999999999999999999999999999999999999984
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-37 Score=314.49 Aligned_cols=221 Identities=37% Similarity=0.540 Sum_probs=181.1
Q ss_pred CCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHC----CCcE
Q 045236 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIAD----GVDV 112 (604)
Q Consensus 38 ~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~----gvdV 112 (604)
...+.|..||||||||||+|+.... .+.+.|+||+|+|+.+|+++..+ ....++++||+++++. +++|
T Consensus 37 ~~~~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~I 109 (264)
T cd07487 37 RTTPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRV 109 (264)
T ss_pred CCCCCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceE
Confidence 4457788999999999999986431 23359999999999999998766 5778899999999998 9999
Q ss_pred EEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCC--CcccCCCceEeeccCCCCCccceEEEcCCCcEE
Q 045236 113 ISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF--TATNIAPWILTVGASTIDREFPADAILGDGRIF 190 (604)
Q Consensus 113 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~ 190 (604)
||||||... ......+.+..++.++.++|++||+||||+|.... ..+...+++|+||+...+..
T Consensus 110 in~S~g~~~-~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------- 175 (264)
T cd07487 110 VNLSLGAPP-DPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------- 175 (264)
T ss_pred EEeccCCCC-CCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-------------
Confidence 999999883 22446678888899999999999999999997765 45567889999998532210
Q ss_pred EeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc
Q 045236 191 GGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL 270 (604)
Q Consensus 191 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~ 270 (604)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEec
Q 045236 271 IADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAA 350 (604)
Q Consensus 271 ~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 350 (604)
. ...++.||++||+. ++++||||+|||.+|+++
T Consensus 176 --------------------------------------------~-~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~ 208 (264)
T cd07487 176 --------------------------------------------H-DDGISYFSSRGPTG--DGRIKPDVVAPGENIVSC 208 (264)
T ss_pred --------------------------------------------C-CccccccccCCCCC--CCCcCCCEEccccceEec
Confidence 0 12357899999998 789999999999999998
Q ss_pred ccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 351 WTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
.+.... ........|..++|||||||+|||++|||+|++|.|++.+||++|++||+
T Consensus 209 ~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 209 RSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 664311 01122367899999999999999999999999999999999999999985
No 18
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.1e-37 Score=309.93 Aligned_cols=235 Identities=33% Similarity=0.409 Sum_probs=176.4
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
++|++..++|.... ..+...+.|..||||||||||+|+.. ++...|+||+|+|+.+|++..
T Consensus 19 ~~~~~~~~~~~~~~----------~~~~~~~~d~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~ 79 (254)
T cd07490 19 AGRVAQWADFDENR----------RISATEVFDAGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDD 79 (254)
T ss_pred hcccCCceeccCCC----------CCCCCCCCCCCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecC
Confidence 56676666665421 12233466889999999999999864 223589999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhc-CCcEEEEcCCCCCCCCCCcccCCCceEee
Q 045236 91 PGCFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQ-HGVVVSCSAGNSGPGPFTATNIAPWILTV 169 (604)
Q Consensus 91 ~g~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitV 169 (604)
.++..+++++||+++++.+++|||||||... .. .+.+..++....+ +|++||+||||+|......+...+++|+|
T Consensus 80 ~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~--~~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~V 155 (254)
T cd07490 80 GGGSLSQIIAGMEWAVEKDADVVSMSLGGTY--YS--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSV 155 (254)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEECCCcCC--CC--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEE
Confidence 7788889999999999999999999999882 22 4566655555553 69999999999998877777788999999
Q ss_pred ccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHH
Q 045236 170 GASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAA 249 (604)
Q Consensus 170 gAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~ 249 (604)
||.+.+.........
T Consensus 156 ga~~~~~~~~~~s~~----------------------------------------------------------------- 170 (254)
T cd07490 156 GAVDRDDEDAWFSSF----------------------------------------------------------------- 170 (254)
T ss_pred ecccccCCccCccCC-----------------------------------------------------------------
Confidence 996543211000000
Q ss_pred HHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCC
Q 045236 250 VKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPN 329 (604)
Q Consensus 250 ~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~ 329 (604)
........+++|.
T Consensus 171 -------------------------------------------------------------------g~~~~~~~~~~~~ 183 (254)
T cd07490 171 -------------------------------------------------------------------GSSGASLVSAPDS 183 (254)
T ss_pred -------------------------------------------------------------------cccccccccCCCC
Confidence 0011222333443
Q ss_pred CCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 045236 330 SLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTA 409 (604)
Q Consensus 330 ~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA 409 (604)
.. ....||||.|||.+|+++.... .....|..++|||||||+|||++|||+|++|+|++.+||++|++||
T Consensus 184 ~~-~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA 253 (254)
T cd07490 184 PP-DEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253 (254)
T ss_pred Cc-cCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhc
Confidence 32 4578999999999999975321 1126799999999999999999999999999999999999999998
Q ss_pred c
Q 045236 410 Y 410 (604)
Q Consensus 410 ~ 410 (604)
+
T Consensus 254 ~ 254 (254)
T cd07490 254 Y 254 (254)
T ss_pred C
Confidence 4
No 19
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.9e-36 Score=306.90 Aligned_cols=206 Identities=32% Similarity=0.434 Sum_probs=167.0
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHH----------HCCC
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAI----------ADGV 110 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~----------~~gv 110 (604)
.+|..||||||||||+|...+ ..| +.||||+|+|+.+|+++..+...+++++|++||+ .+++
T Consensus 67 ~~~~~~HGT~vAgiiaa~~~~---~~~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~ 138 (285)
T cd07496 67 VSPSSWHGTHVAGTIAAVTNN---GVG-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPA 138 (285)
T ss_pred CCCCCCCHHHHHHHHhCcCCC---CCC-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCC
Confidence 456789999999999998642 222 4899999999999999887778889999999998 4578
Q ss_pred cEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC-CCcccCCCceEeeccCCCCCccceEEEcCCCcE
Q 045236 111 DVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP-FTATNIAPWILTVGASTIDREFPADAILGDGRI 189 (604)
Q Consensus 111 dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~ 189 (604)
+|||||||... .. ...+..++..+.++|++||+||||+|... ...+...+++|+||+.+.
T Consensus 139 ~Iin~S~G~~~--~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------- 199 (285)
T cd07496 139 KVINLSLGGDG--AC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL--------------- 199 (285)
T ss_pred eEEEeCCCCCC--CC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC---------------
Confidence 99999999872 21 45677888888899999999999999775 556677889999997431
Q ss_pred EEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc
Q 045236 190 FGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE 269 (604)
Q Consensus 190 ~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~ 269 (604)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEe
Q 045236 270 LIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILA 349 (604)
Q Consensus 270 ~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s 349 (604)
.+.++.||++||.. ||.|||.+|.+
T Consensus 200 -----------------------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~ 224 (285)
T cd07496 200 -----------------------------------------------RGQRASYSNYGPAV--------DVSAPGGDCAS 224 (285)
T ss_pred -----------------------------------------------CCCcccccCCCCCC--------CEEeCCCCccc
Confidence 34567899999976 99999999998
Q ss_pred cccCCCCCC--CCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 045236 350 AWTGSTGPT--DLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 350 a~~~~~~~~--~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T 408 (604)
+........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 225 DVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 876532110 00111223578999999999999999999999999999999999999976
No 20
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.3e-36 Score=300.90 Aligned_cols=206 Identities=32% Similarity=0.394 Sum_probs=169.0
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEccc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSVG 118 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG 118 (604)
.+.|..||||||||||+|+..+. ..+.|+||+|+|+.+|++...+ +...++.+++++|++.+++|||||||
T Consensus 35 ~~~~~~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g 106 (242)
T cd07498 35 PTSDIDGHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWG 106 (242)
T ss_pred CCCCCCCCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccC
Confidence 45788999999999999986321 2358999999999999998764 67788999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHhhhc-CCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeecc
Q 045236 119 ASGYAPQYDQDSIAIGSFGAAQ-HGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYA 197 (604)
Q Consensus 119 ~~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~ 197 (604)
... ........+..++.++.+ +|+++|+||||+|......+...+++|+||+.+.
T Consensus 107 ~~~-~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------- 162 (242)
T cd07498 107 GSD-STESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------- 162 (242)
T ss_pred CCC-CCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------
Confidence 873 223345667777777888 9999999999999877667778999999998431
Q ss_pred CCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccccccc
Q 045236 198 GESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLI 277 (604)
Q Consensus 198 ~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~i 277 (604)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCC
Q 045236 278 PATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGP 357 (604)
Q Consensus 278 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 357 (604)
.+.++.||++||.. |+.|||.+++.........
T Consensus 163 ---------------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~ 195 (242)
T cd07498 163 ---------------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA 195 (242)
T ss_pred ---------------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc
Confidence 33457899999976 9999999998875442110
Q ss_pred CCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 045236 358 TDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 358 ~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T 408 (604)
.+.....|..++|||||||+|||++|||+|++|+|++.|||++|++|
T Consensus 196 ----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 196 ----GDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ----ccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 11223678999999999999999999999999999999999999976
No 21
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=5.7e-37 Score=314.59 Aligned_cols=254 Identities=35% Similarity=0.490 Sum_probs=193.3
Q ss_pred CceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCC
Q 045236 12 KKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91 (604)
Q Consensus 12 ~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~ 91 (604)
.|+.+.+.|.+.. .......|..||||||||||+|.. . .+. ....|+||+|+|+.+|++...
T Consensus 24 ~~~~~~~~~~~~~-----------~~~~~~~~~~~HGT~va~ii~~~~-~-~~~-----~~~~Gva~~a~l~~~~i~~~~ 85 (282)
T PF00082_consen 24 SKVPGGYNFVDGN-----------PNPSPSDDDNGHGTHVAGIIAGNG-G-NNG-----PGINGVAPNAKLYSYKIFDNS 85 (282)
T ss_dssp EEEEEEEETTTTB-----------STTTSSSTSSSHHHHHHHHHHHTT-S-SSS-----SSETCSSTTSEEEEEECSSTT
T ss_pred ccccceeeccCCC-----------CCcCccccCCCccchhhhhccccc-c-ccc-----ccccccccccccccccccccc
Confidence 3444567776642 123446688999999999999997 2 222 224899999999999998877
Q ss_pred CCCHHHHHHHHHHHH-HCCCcEEEEcccCCC-CCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCC---cccCCCce
Q 045236 92 GCFDSDILAAMDQAI-ADGVDVISLSVGASG-YAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT---ATNIAPWI 166 (604)
Q Consensus 92 g~~~~dil~aid~A~-~~gvdVIn~SlG~~~-~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~v 166 (604)
+....+++++|++++ +++++|||+|||... .......+.+..+...+.++|+++|+||||+|..... .+...+++
T Consensus 86 ~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~v 165 (282)
T PF00082_consen 86 GGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNV 165 (282)
T ss_dssp SEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTS
T ss_pred ccccccccchhhhhhhccCCccccccccccccccccccccccccccccccccCcceeecccccccccccccccccccccc
Confidence 777888999999999 899999999999831 0112233445666667889999999999999876543 45556788
Q ss_pred EeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhH
Q 045236 167 LTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEK 246 (604)
Q Consensus 167 itVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~ 246 (604)
|+||+.+.
T Consensus 166 i~Vg~~~~------------------------------------------------------------------------ 173 (282)
T PF00082_consen 166 ITVGAVDN------------------------------------------------------------------------ 173 (282)
T ss_dssp EEEEEEET------------------------------------------------------------------------
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 88887321
Q ss_pred HHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCC
Q 045236 247 GAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSR 326 (604)
Q Consensus 247 ~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~ 326 (604)
.+.++.||++
T Consensus 174 ----------------------------------------------------------------------~~~~~~~s~~ 183 (282)
T PF00082_consen 174 ----------------------------------------------------------------------NGQPASYSNY 183 (282)
T ss_dssp ----------------------------------------------------------------------TSSBSTTSSB
T ss_pred ----------------------------------------------------------------------cccccccccc
Confidence 3345789999
Q ss_pred CCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 045236 327 GPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALM 406 (604)
Q Consensus 327 GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~ 406 (604)
|+... ++++||||+|||.+|+++++.... ..|..++|||||||+|||++|||+|++|+|++.+||.+|+
T Consensus 184 g~~~~-~~~~~~di~a~G~~i~~~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~ 252 (282)
T PF00082_consen 184 GGPSD-DGRIKPDIAAPGGNILSAVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLI 252 (282)
T ss_dssp STTET-TCTTCEEEEEECSSEEEEETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred ccccc-cccccccccccccccccccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 75442 689999999999999988876310 3578899999999999999999999999999999999999
Q ss_pred hccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 407 TTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 407 ~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
+||.+....+ .......||||+||+.+|++
T Consensus 253 ~ta~~~~~~~---------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 253 NTADDLGSTN---------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHSBESSETT---------SSSSHHHHTTSBE-HHHHHH
T ss_pred HhCcccCcCC---------CCCCCCCccCChhCHHHHhC
Confidence 9999886221 12344678999999999874
No 22
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1e-35 Score=304.24 Aligned_cols=210 Identities=29% Similarity=0.338 Sum_probs=169.7
Q ss_pred CCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEc
Q 045236 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLS 116 (604)
Q Consensus 38 ~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~S 116 (604)
..+..|..||||||||||+|+.......-|++ .+.|+||+|+|+.+|++...+ +...+++++|++|++.|++|||||
T Consensus 54 ~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S 131 (273)
T cd07485 54 DNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNS 131 (273)
T ss_pred CCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEec
Confidence 34456789999999999999864322211221 235799999999999998754 677789999999999999999999
Q ss_pred ccCCCCCCCCcccHHHHHHHhhhcC-------CcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcE
Q 045236 117 VGASGYAPQYDQDSIAIGSFGAAQH-------GVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRI 189 (604)
Q Consensus 117 lG~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~ 189 (604)
||.. ........+..++..+.++ |++||+||||+|......+...+++|+|++.+.
T Consensus 132 ~g~~--~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~--------------- 194 (273)
T cd07485 132 WGGT--GGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT--------------- 194 (273)
T ss_pred CCCC--CccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC---------------
Confidence 9987 3333456677777778777 999999999999877666778889999997421
Q ss_pred EEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc
Q 045236 190 FGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE 269 (604)
Q Consensus 190 ~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~ 269 (604)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCC-cEE
Q 045236 270 LIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGV-NIL 348 (604)
Q Consensus 270 ~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~ 348 (604)
.+.++.||++|+.. ||.|||. .|+
T Consensus 195 -----------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~ 219 (273)
T cd07485 195 -----------------------------------------------NDNKASFSNYGRWV--------DIAAPGVGTIL 219 (273)
T ss_pred -----------------------------------------------CCCcCccccCCCce--------EEEeCCCCccc
Confidence 34556899999876 9999999 999
Q ss_pred ecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 045236 349 AAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPD-WSPAAIKSALMTT 408 (604)
Q Consensus 349 sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~-~sp~~Iks~L~~T 408 (604)
++++.... .....|..++|||||||+|||++|||+|++|. |+|.|||++|++|
T Consensus 220 ~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 220 STVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 88775311 11257899999999999999999999999999 9999999999986
No 23
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.8e-35 Score=300.21 Aligned_cols=212 Identities=33% Similarity=0.411 Sum_probs=179.2
Q ss_pred CCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeec
Q 045236 10 CNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICW 89 (604)
Q Consensus 10 cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 89 (604)
++.+++..++|... ..++.|..||||||||||++..... ..+.|+||+|+|+.+|++.
T Consensus 47 ~~~~~~~~~~~~~~--------------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~ 104 (260)
T cd07484 47 LKVKFVLGYDFVDN--------------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLD 104 (260)
T ss_pred ccCCcccceeccCC--------------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEEC
Confidence 46777777777643 1236788999999999999875321 2258999999999999998
Q ss_pred CCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEe
Q 045236 90 SPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILT 168 (604)
Q Consensus 90 ~~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vit 168 (604)
..+ +...++++||+++++.|++|||+|||.. . ....+..++..+.++|++||+||||+|......++..+++|+
T Consensus 105 ~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~--~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~ 179 (260)
T cd07484 105 ANGSGSLADIANGIRYAADKGAKVINLSLGGG--L---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIA 179 (260)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCeEEEecCCCC--C---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEE
Confidence 755 6778899999999999999999999988 2 346677778888899999999999999887788888999999
Q ss_pred eccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHH
Q 045236 169 VGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGA 248 (604)
Q Consensus 169 VgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~ 248 (604)
||+.+.
T Consensus 180 Vga~~~-------------------------------------------------------------------------- 185 (260)
T cd07484 180 VAATDQ-------------------------------------------------------------------------- 185 (260)
T ss_pred EEeeCC--------------------------------------------------------------------------
Confidence 997431
Q ss_pred HHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCC
Q 045236 249 AVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGP 328 (604)
Q Consensus 249 ~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP 328 (604)
.+..+.||++|+
T Consensus 186 --------------------------------------------------------------------~~~~~~~s~~g~ 197 (260)
T cd07484 186 --------------------------------------------------------------------DDKRASFSNYGK 197 (260)
T ss_pred --------------------------------------------------------------------CCCcCCcCCCCC
Confidence 334567899997
Q ss_pred CCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 045236 329 NSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 329 ~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T 408 (604)
.. |+.|||..|+++.+. ..|..++|||||||+|||++|||++++| |++.+||++|++|
T Consensus 198 ~~--------~~~apG~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~t 255 (260)
T cd07484 198 WV--------DVSAPGGGILSTTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKT 255 (260)
T ss_pred Cc--------eEEeCCCCcEeecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHh
Confidence 65 999999999988765 5789999999999999999999999999 9999999999999
Q ss_pred cccC
Q 045236 409 AYNL 412 (604)
Q Consensus 409 A~~~ 412 (604)
|+++
T Consensus 256 A~~~ 259 (260)
T cd07484 256 ADDI 259 (260)
T ss_pred CccC
Confidence 9875
No 24
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=2.8e-35 Score=293.04 Aligned_cols=193 Identities=35% Similarity=0.527 Sum_probs=164.7
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEcc
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSV 117 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~Sl 117 (604)
..+.|..+|||||||||++..... .+.|+||+|+|+.+|++...+ ....++++++++|++.|++|||+||
T Consensus 34 ~~~~~~~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~ 104 (229)
T cd07477 34 NDYQDGNGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSL 104 (229)
T ss_pred CCCCCCCCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECC
Confidence 346688999999999999986322 348999999999999998765 5668899999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc--ccCCCceEeeccCCCCCccceEEEcCCCcEEEeeee
Q 045236 118 GASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA--TNIAPWILTVGASTIDREFPADAILGDGRIFGGVSL 195 (604)
Q Consensus 118 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~ 195 (604)
|... ....+..++..+.++|+++|+||||++...... +...+++|+||+.+.
T Consensus 105 g~~~-----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~--------------------- 158 (229)
T cd07477 105 GGPS-----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS--------------------- 158 (229)
T ss_pred ccCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC---------------------
Confidence 9872 234566677788899999999999999776554 778899999997432
Q ss_pred ccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccccc
Q 045236 196 YAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSH 275 (604)
Q Consensus 196 ~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~ 275 (604)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCC
Q 045236 276 LIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGST 355 (604)
Q Consensus 276 ~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 355 (604)
.+.+..||++|+.. |+.|||.+|+++++.
T Consensus 159 -----------------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-- 187 (229)
T cd07477 159 -----------------------------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN-- 187 (229)
T ss_pred -----------------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC--
Confidence 33446799999865 999999999999876
Q ss_pred CCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 045236 356 GPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 356 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T 408 (604)
..|..++|||||||+|||++|||+|++|.+++.+||++|++|
T Consensus 188 -----------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 -----------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 578999999999999999999999999999999999999986
No 25
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=4.8e-35 Score=296.29 Aligned_cols=190 Identities=39% Similarity=0.540 Sum_probs=164.2
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHC-----CCcEEE
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIAD-----GVDVIS 114 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~-----gvdVIn 114 (604)
..|..||||||||||+|+. .||||+|+|+.+|+++..+ ...++++++|+++++. +++|||
T Consensus 59 ~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin 124 (255)
T cd04077 59 DSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVAN 124 (255)
T ss_pred CCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEE
Confidence 5688999999999999874 6999999999999998764 6678899999999987 489999
Q ss_pred EcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC-CCcccCCCceEeeccCCCCCccceEEEcCCCcEEEee
Q 045236 115 LSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP-FTATNIAPWILTVGASTIDREFPADAILGDGRIFGGV 193 (604)
Q Consensus 115 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~ 193 (604)
+|||.. . ...+..++.++.++|+++|+||||+|... ...+...+++|+||+.+.
T Consensus 125 ~S~g~~--~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~------------------- 179 (255)
T cd04077 125 MSLGGG--A----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS------------------- 179 (255)
T ss_pred eCCCCC--C----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC-------------------
Confidence 999987 2 45677778888999999999999999765 455667899999998431
Q ss_pred eeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccc
Q 045236 194 SLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIAD 273 (604)
Q Consensus 194 ~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~ 273 (604)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccC
Q 045236 274 SHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTG 353 (604)
Q Consensus 274 ~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~ 353 (604)
.+..+.||++||.. ||+|||.+|+++...
T Consensus 180 -------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~ 208 (255)
T cd04077 180 -------------------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIG 208 (255)
T ss_pred -------------------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccC
Confidence 33457899999976 999999999998774
Q ss_pred CCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 045236 354 STGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYN 411 (604)
Q Consensus 354 ~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~ 411 (604)
.. ..|..++|||||||+|||++|||+|++|+++++|||++|++||++
T Consensus 209 ~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 209 SD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 21 578999999999999999999999999999999999999999974
No 26
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-35 Score=303.96 Aligned_cols=207 Identities=27% Similarity=0.339 Sum_probs=152.8
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcccC
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGA 119 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG~ 119 (604)
.+.|++|||||||+++ .||||+|+|+.+|++++ ..+++++||+||++.++||||||||.
T Consensus 56 ~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~ 114 (298)
T cd07494 56 PACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGY 114 (298)
T ss_pred CCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeeccc
Confidence 4568899999999864 69999999999999864 45678999999999999999999998
Q ss_pred CCCCCC--------CcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEE
Q 045236 120 SGYAPQ--------YDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFG 191 (604)
Q Consensus 120 ~~~~~~--------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~ 191 (604)
...... .....+..++.+|.++|++||+||||++. .++...|++|+||+++.+..- ..
T Consensus 115 ~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g---------~~-- 180 (298)
T cd07494 115 DLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG---------AR-- 180 (298)
T ss_pred CCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC---------cc--
Confidence 631110 11235777888889999999999999874 468889999999986432210 00
Q ss_pred eeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc
Q 045236 192 GVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI 271 (604)
Q Consensus 192 g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~ 271 (604)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCce-----------
Q 045236 272 ADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDV----------- 340 (604)
Q Consensus 272 ~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI----------- 340 (604)
.. ....+.|+|+ ..+++.|||+
T Consensus 181 ------------------------------------------~~-~~~~~~~~s~----~~~g~~~pd~~~~~g~~~~~~ 213 (298)
T cd07494 181 ------------------------------------------RA-SSYASGFRSK----IYPGRQVPDVCGLVGMLPHAA 213 (298)
T ss_pred ------------------------------------------cc-cccccCcccc----cCCCCccCccccccCcCCccc
Confidence 00 0000111111 1135566666
Q ss_pred -----EeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Q 045236 341 -----IAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLD 413 (604)
Q Consensus 341 -----~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~ 413 (604)
+|||..|.++..... ........|..++|||||||||||++|||+|+||.|++++||.+|+.||+++.
T Consensus 214 ~~~~~~APG~~i~~~~~~~~-----~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 214 YLMLPVPPGSQLDRSCAAFP-----DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVT 286 (298)
T ss_pred ccccccCCCcceeccccCCC-----CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 479999876653210 00111267999999999999999999999999999999999999999999774
No 27
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.1e-34 Score=299.62 Aligned_cols=227 Identities=33% Similarity=0.382 Sum_probs=169.5
Q ss_pred CCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC--CCHHHHHHHHHHHHHCCCcEEEEcccCC
Q 045236 43 DTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG--CFDSDILAAMDQAIADGVDVISLSVGAS 120 (604)
Q Consensus 43 D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~dil~aid~A~~~gvdVIn~SlG~~ 120 (604)
|..||||||||||+|+...... ...+.|+||+|+|+.+|++...+ ....++..+++++.+.+++|||||||..
T Consensus 52 d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~ 126 (293)
T cd04842 52 DVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSP 126 (293)
T ss_pred CCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCC
Confidence 8899999999999998744321 11359999999999999988765 5566788999999999999999999988
Q ss_pred CCCCCCcccHHHHHHHhhh-c-CCcEEEEcCCCCCCCCC---CcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeee
Q 045236 121 GYAPQYDQDSIAIGSFGAA-Q-HGVVVSCSAGNSGPGPF---TATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSL 195 (604)
Q Consensus 121 ~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~ 195 (604)
. ... ......++.++. + +|++||+||||+|.... ..+...+++|+|||.+.+......
T Consensus 127 ~--~~~-~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~-------------- 189 (293)
T cd04842 127 V--NNG-YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE-------------- 189 (293)
T ss_pred C--ccc-cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc--------------
Confidence 3 221 123333333333 3 89999999999997654 566788999999996543321000
Q ss_pred ccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccccc
Q 045236 196 YAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSH 275 (604)
Q Consensus 196 ~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~ 275 (604)
.|..
T Consensus 190 ----------------------~~~~------------------------------------------------------ 193 (293)
T cd04842 190 ----------------------GGLG------------------------------------------------------ 193 (293)
T ss_pred ----------------------cccc------------------------------------------------------
Confidence 0000
Q ss_pred ccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCC
Q 045236 276 LIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGST 355 (604)
Q Consensus 276 ~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 355 (604)
.... ...++.||++||+. ++++||||+|||++|+++.+...
T Consensus 194 ------------------------------------~~~~-~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~ 234 (293)
T cd04842 194 ------------------------------------QSDN-SDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG 234 (293)
T ss_pred ------------------------------------ccCC-CCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC
Confidence 0001 55678999999998 68999999999999999975520
Q ss_pred CCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 045236 356 GPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAY-----P---DWSPAAIKSALMTTAY 410 (604)
Q Consensus 356 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-----P---~~sp~~Iks~L~~TA~ 410 (604)
. ........|..++|||||||||||++|||+|++ | .+++.++|++|++||+
T Consensus 235 ~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 235 G----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred C----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 0 011122578999999999999999999999985 4 6777899999999985
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-34 Score=291.76 Aligned_cols=199 Identities=33% Similarity=0.457 Sum_probs=166.3
Q ss_pred CCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEE
Q 045236 37 ESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISL 115 (604)
Q Consensus 37 ~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~ 115 (604)
+..++.|..||||||||||+|+.... ..+.|+||+|+|+.+|++...+ +...+++++|++|++.+++|||+
T Consensus 55 ~~~~~~d~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~ 126 (259)
T cd07473 55 NDNDPMDDNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINN 126 (259)
T ss_pred CCCCCCCCCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 34567889999999999999986432 2248999999999999998766 77889999999999999999999
Q ss_pred cccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC---CCccc--CCCceEeeccCCCCCccceEEEcCCCcEE
Q 045236 116 SVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP---FTATN--IAPWILTVGASTIDREFPADAILGDGRIF 190 (604)
Q Consensus 116 SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~ap~vitVgAst~d~~~~~~~~~~~~~~~ 190 (604)
|||... . ...+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+.
T Consensus 127 S~G~~~--~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~---------------- 185 (259)
T cd07473 127 SWGGGG--P---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS---------------- 185 (259)
T ss_pred CCCCCC--C---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC----------------
Confidence 999882 2 56777888888999999999999998762 22332 3577888887321
Q ss_pred EeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc
Q 045236 191 GGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL 270 (604)
Q Consensus 191 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~ 270 (604)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEec
Q 045236 271 IADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAA 350 (604)
Q Consensus 271 ~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 350 (604)
.+.++.||++||. +||+.|||.++++.
T Consensus 186 ----------------------------------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~ 212 (259)
T cd07473 186 ----------------------------------------------NDALASFSNYGKK-------TVDLAAPGVDILST 212 (259)
T ss_pred ----------------------------------------------CCCcCcccCCCCC-------CcEEEeccCCeEec
Confidence 3345679999985 46999999999997
Q ss_pred ccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 351 WTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
.+. ..|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 213 ~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 213 SPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 654 57899999999999999999999999999999999999999984
No 29
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.1e-34 Score=297.58 Aligned_cols=106 Identities=31% Similarity=0.325 Sum_probs=85.5
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCC-CHHHHHHHHHHHHHCCCcEEEEcc
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGC-FDSDILAAMDQAIADGVDVISLSV 117 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~dil~aid~A~~~gvdVIn~Sl 117 (604)
+.+.|..||||||||+|+|+.. ..||||+|+|+.+|+++..+. ...++++||++|++++++|||+||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~ 114 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSL 114 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 4567889999999999998742 259999999999999987765 788999999999999999999999
Q ss_pred cCCCCCCC------CcccHHHHHHHhhhcCCcEEEEcCCCCCCCC
Q 045236 118 GASGYAPQ------YDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP 156 (604)
Q Consensus 118 G~~~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 156 (604)
|....... .....+..++..+.++|++||+||||+|...
T Consensus 115 G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 115 GGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred ccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 98631111 1113466667777899999999999998643
No 30
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-34 Score=293.04 Aligned_cols=205 Identities=21% Similarity=0.182 Sum_probs=148.0
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHH----CCCcEEEEc
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIA----DGVDVISLS 116 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~----~gvdVIn~S 116 (604)
+.|.+||||||||||+|.. +.+| +.||||+|+|+.+|++. .++++++|++|++ .++.+||||
T Consensus 47 ~~d~~gHGT~VAGiIaa~~----n~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s 112 (277)
T cd04843 47 DQADSDHGTAVLGIIVAKD----NGIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQ 112 (277)
T ss_pred CCCCCCCcchhheeeeeec----CCCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEcc
Confidence 6788999999999999973 1122 48999999999999975 3456677777776 356778999
Q ss_pred ccCCCCCCC----CcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcc-------------cCCCceEeeccCCCCCccc
Q 045236 117 VGASGYAPQ----YDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTAT-------------NIAPWILTVGASTIDREFP 179 (604)
Q Consensus 117 lG~~~~~~~----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~ap~vitVgAst~d~~~~ 179 (604)
||....... .....+..++.++.++|+++|+||||++....... ...+++|+|||.+.+
T Consensus 113 ~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~---- 188 (277)
T cd04843 113 TGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST---- 188 (277)
T ss_pred ccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC----
Confidence 998621110 12334556777888999999999999986421110 012456666653210
Q ss_pred eEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEE
Q 045236 180 ADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMI 259 (604)
Q Consensus 180 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i 259 (604)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCc
Q 045236 260 LANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPD 339 (604)
Q Consensus 260 ~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPD 339 (604)
. ....+.||++||.. |
T Consensus 189 -------------------------------------------------------~-~~~~~~fSn~G~~v--------d 204 (277)
T cd04843 189 -------------------------------------------------------T-GHTRLAFSNYGSRV--------D 204 (277)
T ss_pred -------------------------------------------------------C-CCccccccCCCCcc--------c
Confidence 0 11268899999976 9
Q ss_pred eEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHH----h-CCCCCHHHHHHHHHhccc
Q 045236 340 VIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRK----A-YPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 340 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~-~P~~sp~~Iks~L~~TA~ 410 (604)
|.|||++|+++.+..... ........|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 205 i~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 205 VYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred eEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999998764211 0111123457899999999999999999975 3 499999999999999974
No 31
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-33 Score=292.15 Aligned_cols=226 Identities=30% Similarity=0.337 Sum_probs=155.4
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEcccC
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSVGA 119 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG~ 119 (604)
+.|.+||||||||||+|+... +...||||+|+|+.+|++...+ ....++++||++|++.|++|||+|||.
T Consensus 42 ~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~ 112 (297)
T cd07480 42 VQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGA 112 (297)
T ss_pred CCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCC
Confidence 578899999999999998643 2247999999999999987654 666779999999999999999999998
Q ss_pred CCC--------CCCCcccHHHHHHHhh---------------hcCCcEEEEcCCCCCCCCCCcc-----cCCCceEeecc
Q 045236 120 SGY--------APQYDQDSIAIGSFGA---------------AQHGVVVSCSAGNSGPGPFTAT-----NIAPWILTVGA 171 (604)
Q Consensus 120 ~~~--------~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~-----~~ap~vitVgA 171 (604)
... ........+......+ .++|++||+||||+|....... ...++++.|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~ 192 (297)
T cd07480 113 DFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAA 192 (297)
T ss_pred CCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEE
Confidence 620 0011112233222333 6789999999999986432211 01122222222
Q ss_pred CCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHH
Q 045236 172 STIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVK 251 (604)
Q Consensus 172 st~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~ 251 (604)
...
T Consensus 193 V~~----------------------------------------------------------------------------- 195 (297)
T cd07480 193 VGA----------------------------------------------------------------------------- 195 (297)
T ss_pred ECC-----------------------------------------------------------------------------
Confidence 100
Q ss_pred hcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCC
Q 045236 252 LAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSL 331 (604)
Q Consensus 252 ~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~ 331 (604)
.+....|+++.+.
T Consensus 196 -----------------------------------------------------------------~~~~~~~~~~~~~-- 208 (297)
T cd07480 196 -----------------------------------------------------------------LGRTGNFSAVANF-- 208 (297)
T ss_pred -----------------------------------------------------------------CCCCCCccccCCC--
Confidence 1111223333322
Q ss_pred CCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 045236 332 TAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYN 411 (604)
Q Consensus 332 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~ 411 (604)
...||||+|||.+|+++++. +.|..++|||||||+|||++|||+|++|.+++.+++.+|+.....
T Consensus 209 --~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~ 273 (297)
T cd07480 209 --SNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTA 273 (297)
T ss_pred --CCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhh
Confidence 23578999999999998876 589999999999999999999999999999998888887743221
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCcccCcc
Q 045236 412 LDNSGENIKDLASGEESTPFIHGAGHVDPN 441 (604)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~G~G~id~~ 441 (604)
..... . .......++|+|++++.
T Consensus 274 ~~~~~-~------~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 274 ARTTQ-F------APGLDLPDRGVGLGLAP 296 (297)
T ss_pred cccCC-C------CCCCChhhcCCceeecC
Confidence 10000 0 22345568999999875
No 32
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=305.96 Aligned_cols=357 Identities=24% Similarity=0.284 Sum_probs=233.9
Q ss_pred CCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC---CCHHHHHHHHHHHHHCCCcEEEEcccC
Q 045236 43 DTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG---CFDSDILAAMDQAIADGVDVISLSVGA 119 (604)
Q Consensus 43 D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~dil~aid~A~~~gvdVIn~SlG~ 119 (604)
+..-|||||||||+|+..+.. ...|+||+|+|+.+++-+..- -+...+..||..+++..+||||||+|-
T Consensus 308 ~Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 308 VSGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred cCCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 346699999999999985432 358999999999999965432 344568899999999999999999998
Q ss_pred CCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCccc---CCCceEeeccCCCCCccceEEEcCCCcEEEeeeec
Q 045236 120 SGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATN---IAPWILTVGASTIDREFPADAILGDGRIFGGVSLY 196 (604)
Q Consensus 120 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~ 196 (604)
.. ..+.....++..-..+-++||++|+||||.||...+++. ....+|.|||-....-.
T Consensus 380 ~a-~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm------------------ 440 (1304)
T KOG1114|consen 380 DA-HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM------------------ 440 (1304)
T ss_pred cC-CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH------------------
Confidence 84 445555556555544458899999999999998777654 34468888872110000
Q ss_pred cCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccc
Q 045236 197 AGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHL 276 (604)
Q Consensus 197 ~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ 276 (604)
...|.+
T Consensus 441 ------~a~y~~-------------------------------------------------------------------- 446 (1304)
T KOG1114|consen 441 ------QAEYSV-------------------------------------------------------------------- 446 (1304)
T ss_pred ------Hhhhhh--------------------------------------------------------------------
Confidence 000000
Q ss_pred cceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCC
Q 045236 277 IPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTG 356 (604)
Q Consensus 277 ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~ 356 (604)
..+....+..+|||||+. ||-+--.|.|||+.|.+--.-..
T Consensus 447 ------------------------------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~tl- 487 (1304)
T KOG1114|consen 447 ------------------------------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYTL- 487 (1304)
T ss_pred ------------------------------------hccCCCCccccccCCCCc--CCCcceEEecCCccccCCchhhh-
Confidence 001134578899999999 89999999999999866422211
Q ss_pred CCCCCCCCCCccceEecCcccchhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCC
Q 045236 357 PTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFI 432 (604)
Q Consensus 357 ~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~ 432 (604)
..-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||+++... .+|.
T Consensus 488 ----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~fa 544 (1304)
T KOG1114|consen 488 ----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DSFA 544 (1304)
T ss_pred ----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------chhc
Confidence 4568999999999999999999864 577899999999999999998532 5689
Q ss_pred CCCcccCccccCCCCceeccCchhhhhccccCCCCccceeeeccCCccccccccc--CCCCCCCCCCceeeeccCCCceE
Q 045236 433 HGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSSDICTRA--LATPGNLNYPSFSVVFNSNNDVV 510 (604)
Q Consensus 433 ~G~G~id~~~A~~~glv~d~~~~d~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ln~ps~~~~~~~~~~~~ 510 (604)
||.|+|++.+|.+--.-.+.....-+.|+ ..+-.+ +|... ...+.+.+-|+
T Consensus 545 qG~GmlqVdkAyEyL~q~~~~f~~~l~f~-------------~v~VgN--~~srGIyLRep~~~~~p~------------ 597 (1304)
T KOG1114|consen 545 QGQGMLQVDKAYEYLAQSDFSFPNALGFI-------------NVNVGN--SCSRGIYLREPTQVCSPS------------ 597 (1304)
T ss_pred cCcceeehhHHHHHHHHhhhcCCccceeE-------------EEeecc--ccccceEecCCcccCCcc------------
Confidence 99999999999872111111111112220 000000 33221 11111112111
Q ss_pred EEEEEE----eccC---CCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccCCCCCCCceEEEEEEE-
Q 045236 511 KYKRVV----KNVG---SSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWS- 582 (604)
Q Consensus 511 t~~rtv----~n~~---~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~l~~~- 582 (604)
.++.-| .|-- .+ ...|.+.+.....-.|---|+.|.+ .++.+.+.|+++++.. ..+..++.|.=-
T Consensus 598 e~~i~VePiF~~~~e~~ke-ki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l----~~G~hy~eV~gyD 670 (1304)
T KOG1114|consen 598 EHTIGVEPIFENGEENEKE-KISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTGL----APGVHYTEVLGYD 670 (1304)
T ss_pred ccceeccccccCccccccc-cccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcCC----CCCcceEEEEEee
Confidence 111111 1100 11 1233333332222223334777766 5788999999999988 578888888764
Q ss_pred ----cCCeEEEEEEEEEe
Q 045236 583 ----DGVHLVRSPIAVRW 596 (604)
Q Consensus 583 ----~~~~~v~~P~~~~~ 596 (604)
+.+..+|+|+-|..
T Consensus 671 ~~~p~~gplFrIPVTVi~ 688 (1304)
T KOG1114|consen 671 TANPSRGPLFRIPVTVIK 688 (1304)
T ss_pred cCCcccCceEEeeeEEEc
Confidence 36899999998754
No 33
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-34 Score=285.03 Aligned_cols=136 Identities=25% Similarity=0.317 Sum_probs=104.3
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
++++++.++|...... .....+...|.+||||||||||+ |+||+|+|+.+|++..
T Consensus 22 ~~~i~~~~~~~~~~~~-------~~~~~~~~~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~ 76 (247)
T cd07491 22 QGKIIGGKSFSPYEGD-------GNKVSPYYVSADGHGTAMARMIC------------------RICPSAKLYVIKLEDR 76 (247)
T ss_pred ccccccCCCCCCCCCC-------cccCCCCCCCCCCcHHHHHHHHH------------------HHCCCCeEEEEEeccc
Confidence 4567777888764210 01112223578999999999994 7899999999999976
Q ss_pred CC-------CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCC---cccHHHHHHHhhhcCCcEEEEcCCCCCCCCC-C-
Q 045236 91 PG-------CFDSDILAAMDQAIADGVDVISLSVGASGYAPQY---DQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF-T- 158 (604)
Q Consensus 91 ~g-------~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~- 158 (604)
.+ +...++++||+||+++|+||||||||... ..+ ....+..++.+|.++|++||+||||+|.... .
T Consensus 77 ~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~--~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~ 154 (247)
T cd07491 77 PSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKK--PEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTY 154 (247)
T ss_pred CCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccc--ccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcc
Confidence 43 45678999999999999999999999872 211 2567888888999999999999999997654 2
Q ss_pred -cccCCCceEeeccCC
Q 045236 159 -ATNIAPWILTVGAST 173 (604)
Q Consensus 159 -~~~~ap~vitVgAst 173 (604)
.+...+++|+|||.+
T Consensus 155 ~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 155 PPPAARDRIFRIGAAD 170 (247)
T ss_pred cCcccCCCeEEEEeeC
Confidence 345678999999843
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-33 Score=277.95 Aligned_cols=184 Identities=26% Similarity=0.303 Sum_probs=151.0
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEcc
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSV 117 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~Sl 117 (604)
..+.|..||||||||||++. +|+++|+.+|++...+ +..+++++||+||++.|++||||||
T Consensus 38 ~~~~d~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~ 99 (222)
T cd07492 38 AEGGDKDGHGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSL 99 (222)
T ss_pred CCCCCCCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 44668899999999999753 5999999999998766 7788899999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeecc
Q 045236 118 GASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYA 197 (604)
Q Consensus 118 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~ 197 (604)
|... . .....+..++.++.++|+++|+||||++.... .+...+.+|+|++...++
T Consensus 100 G~~~--~-~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~--------------------- 154 (222)
T cd07492 100 GGPG--D-RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD--------------------- 154 (222)
T ss_pred CCCC--C-CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC---------------------
Confidence 9872 2 23356677778888899999999999986533 256678888888632110
Q ss_pred CCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccccccc
Q 045236 198 GESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLI 277 (604)
Q Consensus 198 ~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~i 277 (604)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCC
Q 045236 278 PATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGP 357 (604)
Q Consensus 278 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 357 (604)
.. +.++ .++|+.|||.+|+++++.
T Consensus 155 -----------------------------------------~~---~~~~--------~~~~~~apg~~i~~~~~~---- 178 (222)
T cd07492 155 -----------------------------------------PK---SFWY--------IYVEFSADGVDIIAPAPH---- 178 (222)
T ss_pred -----------------------------------------Cc---cccc--------CCceEEeCCCCeEeecCC----
Confidence 00 1112 245999999999998876
Q ss_pred CCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 358 TDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 358 ~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
+.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 179 ---------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 179 ---------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999985
No 35
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-33 Score=281.25 Aligned_cols=197 Identities=21% Similarity=0.204 Sum_probs=141.9
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHH--HHCCCcEEEEcc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQA--IADGVDVISLSV 117 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A--~~~gvdVIn~Sl 117 (604)
...|.+||||||||||||. .|++|+++|+..++.. ...+.+.++++|+ .+.+++||||||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCC
Confidence 4568999999999999987 3667999998755521 1223456777888 567999999999
Q ss_pred cCCCCCCC-----CcccHHHHHHHhhhcC-CcEEEEcCCCCCCCC-----CCcccCCCceEeeccCCCCCccceEEEcCC
Q 045236 118 GASGYAPQ-----YDQDSIAIGSFGAAQH-GVVVSCSAGNSGPGP-----FTATNIAPWILTVGASTIDREFPADAILGD 186 (604)
Q Consensus 118 G~~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~~~~~~ap~vitVgAst~d~~~~~~~~~~~ 186 (604)
|... ... +..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 94 G~~~-~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~--------- 163 (247)
T cd07488 94 GEGL-KRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD--------- 163 (247)
T ss_pred ccCC-CCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC---------
Confidence 9873 221 1234566666676665 999999999999743 223456788999998542110
Q ss_pred CcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCC
Q 045236 187 GRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDES 266 (604)
Q Consensus 187 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~ 266 (604)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCc
Q 045236 267 GEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVN 346 (604)
Q Consensus 267 ~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~ 346 (604)
....+.||+++-....++..||||+|||++
T Consensus 164 --------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~ 193 (247)
T cd07488 164 --------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSN 193 (247)
T ss_pred --------------------------------------------------cceecccccccCCCCCCCCceeEEEEeeee
Confidence 111234555432222367899999999999
Q ss_pred EEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCC------HHHHHHHHHhcc
Q 045236 347 ILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWS------PAAIKSALMTTA 409 (604)
Q Consensus 347 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s------p~~Iks~L~~TA 409 (604)
|++ +. +.|..++|||||||||||++|||++++|.+. -.++|.+|+.|+
T Consensus 194 i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 194 YNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 998 22 4688999999999999999999999987765 446777777653
No 36
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-33 Score=285.06 Aligned_cols=188 Identities=33% Similarity=0.473 Sum_probs=165.3
Q ss_pred CCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHC---------CCc
Q 045236 42 RDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIAD---------GVD 111 (604)
Q Consensus 42 ~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~---------gvd 111 (604)
.|++||||||||+|++.. .|||-+++|+++||+.++| +..+++++++|++++. +..
T Consensus 254 ~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~s 319 (501)
T KOG1153|consen 254 EDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKS 319 (501)
T ss_pred cccCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCe
Confidence 589999999999999885 7999999999999999988 7899999999999976 467
Q ss_pred EEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCC-CCCcccCCCceEeeccCCCCCccceEEEcCCCcEE
Q 045236 112 VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPG-PFTATNIAPWILTVGASTIDREFPADAILGDGRIF 190 (604)
Q Consensus 112 VIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~ 190 (604)
|.|||+|+. ..-.+..|+++|.+.||++++||||+..+ +.+.+..+..+|||||++.
T Consensus 320 v~NlSlGg~------~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------------- 377 (501)
T KOG1153|consen 320 VANLSLGGF------RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------------- 377 (501)
T ss_pred EEEEecCCc------ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------------
Confidence 999999988 35678899999999999999999999865 5666778999999999642
Q ss_pred EeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc
Q 045236 191 GGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL 270 (604)
Q Consensus 191 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~ 270 (604)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEec
Q 045236 271 IADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAA 350 (604)
Q Consensus 271 ~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 350 (604)
.+.++.||+||+.. ||-|||++|+|+
T Consensus 378 ----------------------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs 403 (501)
T KOG1153|consen 378 ----------------------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSS 403 (501)
T ss_pred ----------------------------------------------ccchhhhcCcccee--------eeecCchhhhhh
Confidence 56789999999999 999999999999
Q ss_pred ccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCC---------CCHHHHHHHHHhccc
Q 045236 351 WTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPD---------WSPAAIKSALMTTAY 410 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~---------~sp~~Iks~L~~TA~ 410 (604)
|-+.. ....++||||||+|||||++|..+..+|. .||.++|..+..-..
T Consensus 404 ~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 404 WIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 98853 46789999999999999999999998883 378888877765444
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=2.8e-32 Score=277.13 Aligned_cols=204 Identities=30% Similarity=0.360 Sum_probs=160.6
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC--CCHHHHHHHHHHHHHCCCcEEEEcc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG--CFDSDILAAMDQAIADGVDVISLSV 117 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~dil~aid~A~~~gvdVIn~Sl 117 (604)
...|.++|||||||||+|+... ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||+||
T Consensus 41 ~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~ 111 (267)
T cd04848 41 SNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSW 111 (267)
T ss_pred CCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccC
Confidence 4567899999999999998643 2358999999999999998764 5566788999999999999999999
Q ss_pred cCCCCCCC----------CcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc---------ccCCCceEeeccCCCCCcc
Q 045236 118 GASGYAPQ----------YDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA---------TNIAPWILTVGASTIDREF 178 (604)
Q Consensus 118 G~~~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~ap~vitVgAst~d~~~ 178 (604)
|....... ...+.+...+..+.++|+++|+||||++...... +...+++|+||+.+.+
T Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~--- 188 (267)
T cd04848 112 GGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN--- 188 (267)
T ss_pred CCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC---
Confidence 98831110 1445667777788899999999999998654332 2345677888874321
Q ss_pred ceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEE
Q 045236 179 PADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGM 258 (604)
Q Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~ 258 (604)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccc--ccCCCCCCCCCCcc
Q 045236 259 ILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAA--FSSRGPNSLTAEIL 336 (604)
Q Consensus 259 i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~--fSS~GP~~~~~~~l 336 (604)
+.... ||++|+.. -
T Consensus 189 -----------------------------------------------------------~~~~~~~~s~~~~~~-----~ 204 (267)
T cd04848 189 -----------------------------------------------------------GTIASYSYSNRCGVA-----A 204 (267)
T ss_pred -----------------------------------------------------------CCcccccccccchhh-----h
Confidence 12223 47777643 2
Q ss_pred CCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 337 KPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 337 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
.+++.|||.+|+++.+.. ...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 205 ~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 205 NWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred hheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 447999999999987731 157889999999999999999999999999999999999999985
No 38
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.98 E-value=5.7e-32 Score=279.97 Aligned_cols=198 Identities=21% Similarity=0.174 Sum_probs=145.8
Q ss_pred CCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCC
Q 045236 43 DTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGY 122 (604)
Q Consensus 43 D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG~~~~ 122 (604)
|..||||||||||+|+.... . ...||||+|+|+.+|++... ........++.++.+ .++|||||||....
T Consensus 82 ~~~gHGT~vAgiiag~~~~~---~-----~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~ 151 (297)
T cd04059 82 DDNSHGTRCAGEIAAVGNNG---I-----CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDD 151 (297)
T ss_pred cccccCcceeeEEEeecCCC---c-----ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCC
Confidence 88999999999999986321 1 23899999999999998764 333445566655544 56999999998731
Q ss_pred CC--CCcccHHHHHHHhhhc-----CCcEEEEcCCCCCCCCCC----cccCCCceEeeccCCCCCccceEEEcCCCcEEE
Q 045236 123 AP--QYDQDSIAIGSFGAAQ-----HGVVVSCSAGNSGPGPFT----ATNIAPWILTVGASTIDREFPADAILGDGRIFG 191 (604)
Q Consensus 123 ~~--~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~ 191 (604)
.. .........++.++.+ +|++||+||||+|..... .....+++|+|||.+.
T Consensus 152 ~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~----------------- 214 (297)
T cd04059 152 GKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA----------------- 214 (297)
T ss_pred CCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC-----------------
Confidence 11 1122233344444432 699999999999973222 1235678888887431
Q ss_pred eeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc
Q 045236 192 GVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI 271 (604)
Q Consensus 192 g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~ 271 (604)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCc-----
Q 045236 272 ADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVN----- 346 (604)
Q Consensus 272 ~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~----- 346 (604)
.+.++.||++|+.. ++.|||..
T Consensus 215 ---------------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~ 241 (297)
T cd04059 215 ---------------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPE 241 (297)
T ss_pred ---------------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCC
Confidence 34557899999887 89999987
Q ss_pred --EEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 347 --ILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 347 --I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
|+++.... ....|..++|||||||+|||++|||+|+||+|++.|||.+|++||+
T Consensus 242 ~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 242 ASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66655431 0146788999999999999999999999999999999999999985
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.95 E-value=2.8e-27 Score=235.29 Aligned_cols=196 Identities=38% Similarity=0.508 Sum_probs=157.6
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHH-HCCCcEEEEcc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAI-ADGVDVISLSV 117 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~-~~gvdVIn~Sl 117 (604)
...|..+||||||++|++...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++|||+||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 456789999999999999864321 27999999999999987765 56778999999999 89999999999
Q ss_pred cCCCCCCCCcccHHHHHHHhhhcC-CcEEEEcCCCCCCCCC---CcccCCCceEeeccCCCCCccceEEEcCCCcEEEee
Q 045236 118 GASGYAPQYDQDSIAIGSFGAAQH-GVVVSCSAGNSGPGPF---TATNIAPWILTVGASTIDREFPADAILGDGRIFGGV 193 (604)
Q Consensus 118 G~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~ 193 (604)
|... .. ....+...+.++.++ |+++|+|+||.+.... ..+...+++|+||+.+.+..
T Consensus 110 g~~~--~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------- 170 (241)
T cd00306 110 GGPG--SP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGT---------------- 170 (241)
T ss_pred CCCC--CC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCC----------------
Confidence 9883 22 345667777777777 9999999999998765 46778899999998543211
Q ss_pred eeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccc
Q 045236 194 SLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIAD 273 (604)
Q Consensus 194 ~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~ 273 (604)
T Consensus 171 -------------------------------------------------------------------------------- 170 (241)
T cd00306 171 -------------------------------------------------------------------------------- 170 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccc-cccCCCCCCCCCCccCCceEeCCCcEEeccc
Q 045236 274 SHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVA-AFSSRGPNSLTAEILKPDVIAPGVNILAAWT 352 (604)
Q Consensus 274 ~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a-~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~ 352 (604)
.. .++.+| .|||+.|||..+.....
T Consensus 171 ----------------------------------------------~~~~~~~~~--------~~~~~~apg~~~~~~~~ 196 (241)
T cd00306 171 ----------------------------------------------PASPSSNGG--------AGVDIAAPGGDILSSPT 196 (241)
T ss_pred ----------------------------------------------ccCCcCCCC--------CCceEEeCcCCccCccc
Confidence 11 233333 46799999999987511
Q ss_pred CCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 045236 353 GSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 353 ~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T 408 (604)
. ....+..++|||||||+|||++|||+|++|++++.++|++|++|
T Consensus 197 ~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 197 T-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred C-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 1 11688999999999999999999999999999999999999875
No 40
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.5e-28 Score=251.68 Aligned_cols=223 Identities=28% Similarity=0.395 Sum_probs=184.3
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEccc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSVG 118 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG 118 (604)
+-.|.-||||.|||+|||... -.|.||+++|+++|||.+.. +..+..+.|+.+|+...+||+|+|+|
T Consensus 233 tLdD~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIG 300 (1033)
T KOG4266|consen 233 TLDDNLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIG 300 (1033)
T ss_pred ccccCcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccC
Confidence 345779999999999998851 27999999999999998765 78889999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCC--ceEeeccCCCCCccceEEEcCCCcEEEeeeec
Q 045236 119 ASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAP--WILTVGASTIDREFPADAILGDGRIFGGVSLY 196 (604)
Q Consensus 119 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap--~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~ 196 (604)
++ ++.+.|+-.-+.+.....|++|.|+||+||-.+++.|.+. .||.||-
T Consensus 301 GP----DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG------------------------- 351 (1033)
T KOG4266|consen 301 GP----DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG------------------------- 351 (1033)
T ss_pred Cc----ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc-------------------------
Confidence 88 4667788777788889999999999999999888876442 3444442
Q ss_pred cCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccc
Q 045236 197 AGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHL 276 (604)
Q Consensus 197 ~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ 276 (604)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCC----CCCccCCceEeCCCcEEeccc
Q 045236 277 IPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSL----TAEILKPDVIAPGVNILAAWT 352 (604)
Q Consensus 277 ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~----~~~~lKPDI~APG~~I~sa~~ 352 (604)
.+. .+.++.|||||-+.. .-|++||||++-|.+|.....
T Consensus 352 ------------------------------------Idf-dD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v 394 (1033)
T KOG4266|consen 352 ------------------------------------IDF-DDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKV 394 (1033)
T ss_pred ------------------------------------ccc-cchhhhhccCCcceeecCCcccccCCceEeeccccccCcc
Confidence 111 678999999996532 358999999999999876544
Q ss_pred CCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCC
Q 045236 353 GSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEES 428 (604)
Q Consensus 353 ~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~ 428 (604)
. .+-..+||||.|+|.|||+++||-+ +.--+.|+.+|++|+..|.++...
T Consensus 395 ~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------- 448 (1033)
T KOG4266|consen 395 S-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------- 448 (1033)
T ss_pred c-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC-------------
Confidence 3 5678899999999999999999966 344579999999999999998643
Q ss_pred CCCCCCCcccCccccCCC
Q 045236 429 TPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 429 ~~~~~G~G~id~~~A~~~ 446 (604)
.-|+||+|++|+.++.+-
T Consensus 449 NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 449 NMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred chhhccCcchhHHHHHHH
Confidence 237999999999998873
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.3e-19 Score=194.10 Aligned_cols=203 Identities=36% Similarity=0.513 Sum_probs=153.6
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCC-C-CCHHHHHHHHHHHHHCC--CcEEEEc
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP-G-CFDSDILAAMDQAIADG--VDVISLS 116 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~dil~aid~A~~~g--vdVIn~S 116 (604)
..|.++|||||++++++.... ......|+||+++++.+|++... + ....+++++|+++++.+ +++||||
T Consensus 179 ~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s 251 (508)
T COG1404 179 FLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLS 251 (508)
T ss_pred CCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEec
Confidence 479999999999999984211 11225899999999999999865 4 56677899999999999 9999999
Q ss_pred ccCCCCCCCCcccHHHHHHHhhhcCC-cEEEEcCCCCCCCCCC----cccCC--CceEeeccCCCCCccceEEEcCCCcE
Q 045236 117 VGASGYAPQYDQDSIAIGSFGAAQHG-VVVSCSAGNSGPGPFT----ATNIA--PWILTVGASTIDREFPADAILGDGRI 189 (604)
Q Consensus 117 lG~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~a--p~vitVgAst~d~~~~~~~~~~~~~~ 189 (604)
+|.. ........+..++..++..| +++|+++||.+..... .+... +.+++|++.+.
T Consensus 252 ~g~~--~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--------------- 314 (508)
T COG1404 252 LGGS--LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--------------- 314 (508)
T ss_pred CCCC--ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---------------
Confidence 9975 22234456666666777666 9999999999866421 11111 24444444210
Q ss_pred EEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc
Q 045236 190 FGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE 269 (604)
Q Consensus 190 ~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~ 269 (604)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEe
Q 045236 270 LIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILA 349 (604)
Q Consensus 270 ~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s 349 (604)
.+.++.||++|+.. ..++.|||.+|++
T Consensus 315 -----------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~ 341 (508)
T COG1404 315 -----------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILS 341 (508)
T ss_pred -----------------------------------------------CCccccccccCCCC------CcceeCCCccccc
Confidence 24567899999752 2399999999988
Q ss_pred -----cccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCC-CCCHHHHHHHHHhcccc
Q 045236 350 -----AWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYP-DWSPAAIKSALMTTAYN 411 (604)
Q Consensus 350 -----a~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P-~~sp~~Iks~L~~TA~~ 411 (604)
.+++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 342 ~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 342 LSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred cccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 444310 2499999999999999999999999999 89999999998888874
No 42
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.75 E-value=1.1e-17 Score=177.37 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=81.5
Q ss_pred CceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHC---CCcEEEEcccCCCCCCCC---cccHHHHHHHhhhcCCcE
Q 045236 71 GEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIAD---GVDVISLSVGASGYAPQY---DQDSIAIGSFGAAQHGVV 144 (604)
Q Consensus 71 g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~---gvdVIn~SlG~~~~~~~~---~~~~~~~a~~~a~~~Gi~ 144 (604)
..+.||||+|+|++|+++++. ..+++.++.+++.+ +++|||+|||.. ...+ ..+.+..++.+|.++||+
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~--e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEP--EQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCcc--ccccCHHHHHHHHHHHHHHHhCCeE
Confidence 346899999999999997542 45677888888887 999999999987 3322 235677788888899999
Q ss_pred EEEcCCCCCCCCC-----------CcccCCCceEeeccCCCCCc
Q 045236 145 VSCSAGNSGPGPF-----------TATNIAPWILTVGASTIDRE 177 (604)
Q Consensus 145 vV~AAGN~G~~~~-----------~~~~~ap~vitVgAst~d~~ 177 (604)
||+|+||+|.... ..+...|||++||+++....
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999999997643 34678999999999876543
No 43
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.41 E-value=2.3e-12 Score=118.54 Aligned_cols=118 Identities=27% Similarity=0.359 Sum_probs=94.5
Q ss_pred CCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccc-cccccceE
Q 045236 202 PDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIA-DSHLIPAT 280 (604)
Q Consensus 202 ~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~-~~~~ip~~ 280 (604)
.....+++|.+. |....+...+++||||||+|+.|.+.+|..+++.+||.|+|++++......... ....+|++
T Consensus 24 ~~~~~~lv~~g~-----g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v 98 (143)
T cd02133 24 LGKTYELVDAGL-----GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVV 98 (143)
T ss_pred CCcEEEEEEccC-----CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEE
Confidence 346788998653 445556677899999999999999999999999999999999998754322211 12568999
Q ss_pred EEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCC
Q 045236 281 MVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNS 330 (604)
Q Consensus 281 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~ 330 (604)
+|+..++..|++|+++ .++|.+..+.. ..+ ++.++.||||||..
T Consensus 99 ~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~-~p~va~fSsrgp~g 142 (143)
T cd02133 99 FISKEDGEALKAALES----SKKLTFNTKKE-KAT-NPDLADFSSRGPWG 142 (143)
T ss_pred EecHHHHHHHHHHHhC----CCeEEEEeccc-ccc-CCccccccCcCCCC
Confidence 9999999999999988 67777777655 456 88899999999963
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.40 E-value=3.5e-12 Score=114.77 Aligned_cols=119 Identities=50% Similarity=0.809 Sum_probs=97.3
Q ss_pred EEcCCCcEEEeeeeccCCCCCCceeeEEEcCC----CCCCcccCCCCCCCCccccEEEEecCCc-hhhhHHHHHHhcCce
Q 045236 182 AILGDGRIFGGVSLYAGESLPDFKLHLVYGGD----CGDRFCYMGRLEPSKVQGKIVVCDRGGN-ARVEKGAAVKLAGGL 256 (604)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~----~~~~~C~~~~~~~~~~~gkIvl~~~g~~-~~~~~~~~~~~aGa~ 256 (604)
+.|+|+.++.|+++++... ..+++++... .....|.+..+...+++||||+|+++.+ .+.+|..+++++||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 6789999999999997553 4567765332 2236798888888999999999999999 999999999999999
Q ss_pred EEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEE
Q 045236 257 GMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTAT 303 (604)
Q Consensus 257 g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~ 303 (604)
|+|++++.............+|.+.|+.+++..|++|+++..+++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999887654433333568999999999999999999998776554
No 45
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.6e-12 Score=130.26 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=68.4
Q ss_pred ccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccc---cCCCCCCCCCCCCCCcccCcccc
Q 045236 367 VDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIK---DLASGEESTPFIHGAGHVDPNRA 443 (604)
Q Consensus 367 ~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~---~~~~~~~~~~~~~G~G~id~~~A 443 (604)
.....-||||.|+|-+||+-||.++++|.++..+++.+-.-|.++..-....-+ .+.......+.-+|+|.+|+.+-
T Consensus 376 ~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagam 455 (629)
T KOG3526|consen 376 RCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAM 455 (629)
T ss_pred ceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHH
Confidence 456677999999999999999999999999999999998888876532111100 01112233456799999999887
Q ss_pred CCCCceeccCchhhhhccccCCC
Q 045236 444 LNPGLVYDIDVSEYVAFLCSIGY 466 (604)
Q Consensus 444 ~~~glv~d~~~~d~~~~~c~~~~ 466 (604)
+....-+...+. .|-|..|.
T Consensus 456 v~lak~wktvpp---ryhc~ag~ 475 (629)
T KOG3526|consen 456 VMLAKAWKTVPP---RYHCTAGL 475 (629)
T ss_pred HHHHHHhccCCC---ceeecccc
Confidence 765444554444 45577663
No 46
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.02 E-value=3.9e-09 Score=94.36 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=79.6
Q ss_pred ceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc---c--ccccccc
Q 045236 204 FKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL---I--ADSHLIP 278 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~---~--~~~~~ip 278 (604)
-.-++++......+.|.+..+...+++|||+||+|+.|.+.+|..+++++||.++|++|+....... . .....+|
T Consensus 17 i~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP 96 (122)
T cd04816 17 VTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVP 96 (122)
T ss_pred cEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeee
Confidence 4567888665555789988888889999999999999999999999999999999999976532211 1 1345699
Q ss_pred eEEEchhhHHHHHHHHhhcCCCe
Q 045236 279 ATMVGAIAGDKIREYIKLSQYPT 301 (604)
Q Consensus 279 ~~~i~~~~g~~l~~~~~~~~~~~ 301 (604)
.++|+..+|+.|++++..+.+.+
T Consensus 97 ~~~Is~~~G~~l~~~l~~g~~v~ 119 (122)
T cd04816 97 VGVITKAAGAALRRRLGAGETLE 119 (122)
T ss_pred EEEEcHHHHHHHHHHHcCCCEEE
Confidence 99999999999999998876533
No 47
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.92 E-value=2.6e-09 Score=91.90 Aligned_cols=91 Identities=26% Similarity=0.343 Sum_probs=69.5
Q ss_pred ceeeEEEcCC-CCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCC----CCccccccccccc
Q 045236 204 FKLHLVYGGD-CGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDE----SGEELIADSHLIP 278 (604)
Q Consensus 204 ~~~~lv~~~~-~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~----~~~~~~~~~~~ip 278 (604)
...+||.... .....|.+..+...+++||||||+||.|.+.+|+.+++++||.|+|+++... ...........+|
T Consensus 6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP 85 (101)
T PF02225_consen 6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIP 85 (101)
T ss_dssp EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSE
T ss_pred EEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEE
Confidence 3567773322 2235577778889999999999999999999999999999999999999211 1122233467899
Q ss_pred eEEEchhhHHHHHHHH
Q 045236 279 ATMVGAIAGDKIREYI 294 (604)
Q Consensus 279 ~~~i~~~~g~~l~~~~ 294 (604)
+++|+..+++.|++|+
T Consensus 86 ~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 86 VVFISYEDGEALLAYI 101 (101)
T ss_dssp EEEE-HHHHHHHHHHH
T ss_pred EEEeCHHHHhhhhccC
Confidence 9999999999999986
No 48
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.83 E-value=1.9e-08 Score=88.53 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=74.1
Q ss_pred ceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc--cc--ccccccce
Q 045236 204 FKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE--LI--ADSHLIPA 279 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~--~~--~~~~~ip~ 279 (604)
..+||+..... ..|.+..+...+++|||+|++||.|.|.+|..+++++||.++|++|+...... .. .....||+
T Consensus 20 ~~~~~~~~~~~--~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~ 97 (120)
T cd02129 20 TLLPLRNLTSS--VLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPV 97 (120)
T ss_pred cceeeecCCCc--CCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccE
Confidence 45777766543 56998888888899999999999999999999999999999999998753111 11 13457899
Q ss_pred EEEchhhHHHHHHHHhh
Q 045236 280 TMVGAIAGDKIREYIKL 296 (604)
Q Consensus 280 ~~i~~~~g~~l~~~~~~ 296 (604)
++|+..+|+.|++.+..
T Consensus 98 v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 98 ALLSYKDMLDIQQTFGD 114 (120)
T ss_pred EEEeHHHHHHHHHHhcc
Confidence 99999999999988764
No 49
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.82 E-value=2.4e-08 Score=88.40 Aligned_cols=95 Identities=25% Similarity=0.355 Sum_probs=73.9
Q ss_pred eEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCC-cccc-------ccccccc
Q 045236 207 HLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESG-EELI-------ADSHLIP 278 (604)
Q Consensus 207 ~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~-~~~~-------~~~~~ip 278 (604)
+|+.... .+.|.+.. ...+++|||+|++||.|.|.+|..+++++||.++|++|+.... ...+ .....||
T Consensus 14 ~lv~~~p--~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP 90 (118)
T cd02127 14 PLVPADP--LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIP 90 (118)
T ss_pred EEEECCc--cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEE
Confidence 4444432 25698644 3567999999999999999999999999999999999986542 1111 1235799
Q ss_pred eEEEchhhHHHHHHHHhhcCCCeEEE
Q 045236 279 ATMVGAIAGDKIREYIKLSQYPTATI 304 (604)
Q Consensus 279 ~~~i~~~~g~~l~~~~~~~~~~~~~i 304 (604)
.++|+..+|+.|++.+..+..+.+.|
T Consensus 91 ~v~Is~~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 91 AAFLLGKNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred EEEecHHHHHHHHHHHHcCCceEEee
Confidence 99999999999999999988776654
No 50
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.77 E-value=3.3e-08 Score=87.84 Aligned_cols=85 Identities=25% Similarity=0.307 Sum_probs=69.2
Q ss_pred CcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc----ccccccceEEEchhhHHHHHH
Q 045236 217 RFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI----ADSHLIPATMVGAIAGDKIRE 292 (604)
Q Consensus 217 ~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~----~~~~~ip~~~i~~~~g~~l~~ 292 (604)
+.|.+.... .+++|||+||+|+.|.+.+|..+++++||.|+|++++........ .....+|+++|+.+++..|++
T Consensus 28 ~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~ 106 (118)
T cd04818 28 DGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKA 106 (118)
T ss_pred cccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHH
Confidence 569887763 469999999999999999999999999999999998876422111 123579999999999999999
Q ss_pred HHhhcCCCeE
Q 045236 293 YIKLSQYPTA 302 (604)
Q Consensus 293 ~~~~~~~~~~ 302 (604)
|++.+...++
T Consensus 107 ~l~~g~~v~v 116 (118)
T cd04818 107 ALAAGGTVTV 116 (118)
T ss_pred HHhcCCcEEE
Confidence 9998765443
No 51
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.77 E-value=3.3e-08 Score=89.97 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=71.4
Q ss_pred CcccCCCC--CCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCc--cccc--cccccceEEEchhhHHHH
Q 045236 217 RFCYMGRL--EPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGE--ELIA--DSHLIPATMVGAIAGDKI 290 (604)
Q Consensus 217 ~~C~~~~~--~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~--~~~~--~~~~ip~~~i~~~~g~~l 290 (604)
+.|.+... ...++.|+|+|++||.|.|.+|..+++++||.++|+||+..... ..+. ....+|.++|+..+|+.|
T Consensus 45 ~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l 124 (138)
T cd02122 45 YGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEI 124 (138)
T ss_pred CCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHH
Confidence 67987766 56789999999999999999999999999999999999976221 1111 234789999999999999
Q ss_pred HHHHhhcCCCeEE
Q 045236 291 REYIKLSQYPTAT 303 (604)
Q Consensus 291 ~~~~~~~~~~~~~ 303 (604)
++++.++.+.+++
T Consensus 125 ~~~l~~G~~Vtv~ 137 (138)
T cd02122 125 LELLERGISVTMV 137 (138)
T ss_pred HHHHHcCCcEEEe
Confidence 9999888765543
No 52
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.76 E-value=3.5e-08 Score=88.41 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=70.2
Q ss_pred CcccCCC--CCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc--c----ccccccceEEEchhhHH
Q 045236 217 RFCYMGR--LEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL--I----ADSHLIPATMVGAIAGD 288 (604)
Q Consensus 217 ~~C~~~~--~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~--~----~~~~~ip~~~i~~~~g~ 288 (604)
..|.+.. +...+++||||||+|+.|.+.+|..+++++||.|+|++++....... . .....+|.+.|+..++.
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~ 110 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGE 110 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHH
Confidence 3498877 77888999999999999999999999999999999999987632211 1 13457999999999999
Q ss_pred HHHHHHhhcCCCe
Q 045236 289 KIREYIKLSQYPT 301 (604)
Q Consensus 289 ~l~~~~~~~~~~~ 301 (604)
.|++|+.++.+.+
T Consensus 111 ~l~~~~~~~~~v~ 123 (126)
T cd00538 111 ALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHhcCCceE
Confidence 9999998866543
No 53
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.72 E-value=1.7e-07 Score=83.81 Aligned_cols=95 Identities=20% Similarity=0.199 Sum_probs=74.3
Q ss_pred ceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc----ccccccccce
Q 045236 204 FKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE----LIADSHLIPA 279 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~----~~~~~~~ip~ 279 (604)
..-++++.. ...|.+..+ +.+++|||+|++|+.|.|.+|..+++++||.++|++|+...+.. ...+...+|.
T Consensus 22 ~~g~lv~~~---~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~ 97 (122)
T cd02130 22 VTGPLVVVP---NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPT 97 (122)
T ss_pred cEEEEEEeC---CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeE
Confidence 346677753 245876554 35799999999999999999999999999999999998733221 1113467999
Q ss_pred EEEchhhHHHHHHHHhhcCCCeE
Q 045236 280 TMVGAIAGDKIREYIKLSQYPTA 302 (604)
Q Consensus 280 ~~i~~~~g~~l~~~~~~~~~~~~ 302 (604)
++|+.++|+.|++.++++.+.++
T Consensus 98 v~Is~~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 98 VGISQEDGKALVAALANGGEVSA 120 (122)
T ss_pred EEecHHHHHHHHHHHhcCCcEEE
Confidence 99999999999999998876544
No 54
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.72 E-value=5.3e-08 Score=87.45 Aligned_cols=84 Identities=30% Similarity=0.376 Sum_probs=67.5
Q ss_pred CcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCC------cccc------ccccccceEEEch
Q 045236 217 RFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESG------EELI------ADSHLIPATMVGA 284 (604)
Q Consensus 217 ~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~------~~~~------~~~~~ip~~~i~~ 284 (604)
..|.+... ..+++|||+|++||.|.|.+|..+++++||.++|++|+.... ...+ .+...||+++|+.
T Consensus 28 ~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~ 106 (126)
T cd02126 28 RACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFS 106 (126)
T ss_pred hcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEH
Confidence 56976543 557899999999999999999999999999999999875532 1111 1245799999999
Q ss_pred hhHHHHHHHHhhcCCCe
Q 045236 285 IAGDKIREYIKLSQYPT 301 (604)
Q Consensus 285 ~~g~~l~~~~~~~~~~~ 301 (604)
.+|+.|++++..+...+
T Consensus 107 ~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 107 KEGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHHhCCceE
Confidence 99999999998876543
No 55
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.67 E-value=1.7e-07 Score=84.05 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred CcccCCCCC--CC----CccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc-----------ccccccce
Q 045236 217 RFCYMGRLE--PS----KVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI-----------ADSHLIPA 279 (604)
Q Consensus 217 ~~C~~~~~~--~~----~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~-----------~~~~~ip~ 279 (604)
+.|.+.... +. ...++|+|++||.|.|.+|..+|+++||.++|++|+.+.....+ .+...||+
T Consensus 23 ~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~ 102 (127)
T cd02125 23 TGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPS 102 (127)
T ss_pred ccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeE
Confidence 568765442 22 37889999999999999999999999999999999865432211 12346999
Q ss_pred EEEchhhHHHHHHHHhhcCCCeE
Q 045236 280 TMVGAIAGDKIREYIKLSQYPTA 302 (604)
Q Consensus 280 ~~i~~~~g~~l~~~~~~~~~~~~ 302 (604)
++|+..+|..|++.+..+...++
T Consensus 103 v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 103 ALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EEECHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999998875544
No 56
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.63 E-value=1.6e-07 Score=85.05 Aligned_cols=87 Identities=25% Similarity=0.373 Sum_probs=66.7
Q ss_pred eeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCch-----hhhHHHHHHhcCceEEEEEcCCCC-C-c-ccccc---
Q 045236 205 KLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNA-----RVEKGAAVKLAGGLGMILANTDES-G-E-ELIAD--- 273 (604)
Q Consensus 205 ~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~-----~~~~~~~~~~aGa~g~i~~~~~~~-~-~-~~~~~--- 273 (604)
.-+|++.+.. .| .+.+.+++|||+|++||.|. |.+|.++++++||.|+|+||+... + . ..+.+
T Consensus 37 tg~lv~~g~~---g~---d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~ 110 (139)
T cd04817 37 TGSLYYCGTS---GG---SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNN 110 (139)
T ss_pred eEEEEEccCC---Cc---cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCC
Confidence 4466664421 14 34566899999999999999 999999999999999999999721 2 1 11222
Q ss_pred ccccceEEEchhhHHHHHHHHhhc
Q 045236 274 SHLIPATMVGAIAGDKIREYIKLS 297 (604)
Q Consensus 274 ~~~ip~~~i~~~~g~~l~~~~~~~ 297 (604)
...||+++|+..+|+.|+..+...
T Consensus 111 ~~~IP~v~is~~dG~~L~~~l~~~ 134 (139)
T cd04817 111 DTTIPSVSVDRADGQALLAALGQS 134 (139)
T ss_pred CceEeEEEeeHHHHHHHHHHhcCC
Confidence 458999999999999999987543
No 57
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.62 E-value=5e-07 Score=81.29 Aligned_cols=84 Identities=18% Similarity=0.189 Sum_probs=66.0
Q ss_pred CCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc-cccccccceEEEchhhHHHHHHHH
Q 045236 216 DRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL-IADSHLIPATMVGAIAGDKIREYI 294 (604)
Q Consensus 216 ~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~-~~~~~~ip~~~i~~~~g~~l~~~~ 294 (604)
.+.|.+...+..+++|||+|++|+.|.|.+|..+++++||.++|+||+....... ..+...+|.+.+ ..+|+.|++.+
T Consensus 41 ~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l 119 (129)
T cd02124 41 DDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDAL 119 (129)
T ss_pred cccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHH
Confidence 3789876555568999999999999999999999999999999999987543221 122334566666 99999999999
Q ss_pred hhcCCC
Q 045236 295 KLSQYP 300 (604)
Q Consensus 295 ~~~~~~ 300 (604)
+.+...
T Consensus 120 ~~G~~v 125 (129)
T cd02124 120 AAGSNV 125 (129)
T ss_pred hcCCeE
Confidence 877543
No 58
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.60 E-value=2e-07 Score=85.25 Aligned_cols=92 Identities=23% Similarity=0.330 Sum_probs=71.4
Q ss_pred eeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc------ccccccc
Q 045236 205 KLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI------ADSHLIP 278 (604)
Q Consensus 205 ~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~------~~~~~ip 278 (604)
..+++.... .+.|.+.. .+++|||+|++||.|.|.+|..+++++||.++|+||+........ .....||
T Consensus 39 ~~~lv~~~~--~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP 113 (139)
T cd02132 39 KTRAVLANP--LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIP 113 (139)
T ss_pred EEEEEECCc--ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEe
Confidence 455665432 35698654 478999999999999999999999999999999998764321111 1135799
Q ss_pred eEEEchhhHHHHHHHHhhcCCCe
Q 045236 279 ATMVGAIAGDKIREYIKLSQYPT 301 (604)
Q Consensus 279 ~~~i~~~~g~~l~~~~~~~~~~~ 301 (604)
+++|+..+|+.|++++..+...+
T Consensus 114 ~v~Is~~~G~~L~~~l~~g~~Vt 136 (139)
T cd02132 114 VVMIPQSAGDALNKSLDQGKKVE 136 (139)
T ss_pred EEEecHHHHHHHHHHHHcCCcEE
Confidence 99999999999999998876543
No 59
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.57 E-value=2.3e-07 Score=82.00 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=64.7
Q ss_pred CcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCC-cccc-----ccccccceEEEchhhHHHH
Q 045236 217 RFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESG-EELI-----ADSHLIPATMVGAIAGDKI 290 (604)
Q Consensus 217 ~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~-~~~~-----~~~~~ip~~~i~~~~g~~l 290 (604)
+.|.+. +..+++|||+|++||.|.|.+|..+++++||.++|++|+.... ...+ .....+|+++|+..++..|
T Consensus 28 ~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L 105 (117)
T cd04813 28 DACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLL 105 (117)
T ss_pred CCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHH
Confidence 569765 5688999999999999999999999999999999999876542 1111 2345799999999999999
Q ss_pred HHHHhhc
Q 045236 291 REYIKLS 297 (604)
Q Consensus 291 ~~~~~~~ 297 (604)
..++...
T Consensus 106 ~~l~~~~ 112 (117)
T cd04813 106 SSLLPKS 112 (117)
T ss_pred HHhcccc
Confidence 9886554
No 60
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.50 E-value=5e-07 Score=83.87 Aligned_cols=83 Identities=20% Similarity=0.238 Sum_probs=68.8
Q ss_pred CcccCCCCCC---CCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccc------cccccceEEEchhhH
Q 045236 217 RFCYMGRLEP---SKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIA------DSHLIPATMVGAIAG 287 (604)
Q Consensus 217 ~~C~~~~~~~---~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~------~~~~ip~~~i~~~~g 287 (604)
+.|.+....+ ....|||+|++||.|.|.+|..+++++||.++|++|+.......+. ....||+++|+..+|
T Consensus 51 ~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg 130 (153)
T cd02123 51 NACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTG 130 (153)
T ss_pred ccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHH
Confidence 5698766544 7899999999999999999999999999999999998654322221 145899999999999
Q ss_pred HHHHHHHhhcCC
Q 045236 288 DKIREYIKLSQY 299 (604)
Q Consensus 288 ~~l~~~~~~~~~ 299 (604)
+.|+.++.....
T Consensus 131 ~~L~~~l~~~~~ 142 (153)
T cd02123 131 EILKKYASYEKG 142 (153)
T ss_pred HHHHHHHhcCCc
Confidence 999999987754
No 61
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.32 E-value=5.3e-06 Score=74.63 Aligned_cols=91 Identities=23% Similarity=0.211 Sum_probs=70.7
Q ss_pred CceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCc--hhhhHHHHHHhcCceEEEEEcCCCCCcccc-------cc
Q 045236 203 DFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGN--ARVEKGAAVKLAGGLGMILANTDESGEELI-------AD 273 (604)
Q Consensus 203 ~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~--~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~-------~~ 273 (604)
..+.+++|.+.. .+..+...+++|||||++++.+ .+.+|..++.++||.|+|++++........ ..
T Consensus 22 ~~~~~lV~~g~G-----~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~ 96 (127)
T cd04819 22 EAKGEPVDAGYG-----LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGP 96 (127)
T ss_pred CeeEEEEEeCCC-----CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCC
Confidence 457888886532 2233446679999999999998 889999999999999999998755432211 12
Q ss_pred ccccceEEEchhhHHHHHHHHhhcC
Q 045236 274 SHLIPATMVGAIAGDKIREYIKLSQ 298 (604)
Q Consensus 274 ~~~ip~~~i~~~~g~~l~~~~~~~~ 298 (604)
...+|++.|+.++++.|...++.+.
T Consensus 97 ~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 97 PSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 3579999999999999999988754
No 62
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.19 E-value=1.7e-05 Score=69.79 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=57.2
Q ss_pred eEEEEEEEeccCCCCceEEEEEEEC--------CCC----------c-EEEEEcceEEEcccceeEEEEEEEEeeccCCC
Q 045236 509 VVKYKRVVKNVGSSVDAVYEVKVNA--------PPN----------V-AVNVWPSKLAFSAEKKALAYEITFSSVGLDGL 569 (604)
Q Consensus 509 ~~t~~rtv~n~~~~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~ 569 (604)
..+++.|++|.|+. +.+|+++... ..| . .+...|..+++ ++|++++++|+|+.+...+.
T Consensus 9 ~~~~~itl~N~~~~-~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 9 KFSFTITLHNYGDK-PVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp EEEEEEEEEE-SSS--EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred ceEEEEEEEECCCC-CEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 47889999999998 9999988762 111 1 56777889999 69999999999999663211
Q ss_pred CCCCceEEEEEEEc-CC-eEEEEEEE
Q 045236 570 GVSPQQSGSIEWSD-GV-HLVRSPIA 593 (604)
Q Consensus 570 ~~~~~~~G~l~~~~-~~-~~v~~P~~ 593 (604)
....+++|+|.+++ .. ..+++||+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 24789999999994 44 49999986
No 63
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.65 E-value=0.00017 Score=65.45 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=61.0
Q ss_pred CCCCccccEEEEecCCc------hhhhH-------HHHHHhcCceEEEEEcCCCC-------Ccccc-ccccccceEEEc
Q 045236 225 EPSKVQGKIVVCDRGGN------ARVEK-------GAAVKLAGGLGMILANTDES-------GEELI-ADSHLIPATMVG 283 (604)
Q Consensus 225 ~~~~~~gkIvl~~~g~~------~~~~~-------~~~~~~aGa~g~i~~~~~~~-------~~~~~-~~~~~ip~~~i~ 283 (604)
...+++||||++.++.| .+..| ...++++||.++|+++.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999999999 88888 69999999999999985322 21111 123569999999
Q ss_pred hhhHHHHHHHHhhcCCCe
Q 045236 284 AIAGDKIREYIKLSQYPT 301 (604)
Q Consensus 284 ~~~g~~l~~~~~~~~~~~ 301 (604)
.+++..|...++.+...+
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 999999999988876443
No 64
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.43 E-value=0.00051 Score=65.13 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=65.0
Q ss_pred ceeeEEEcCCCCCCcccCCCC-----CCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc---------
Q 045236 204 FKLHLVYGGDCGDRFCYMGRL-----EPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE--------- 269 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~-----~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~--------- 269 (604)
.+-++||.+. |....+ ...+++|||+|++++.|.+.+|+++|+++||+|+|+|++..+...
T Consensus 29 v~g~lVyvn~-----G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g 103 (183)
T cd02128 29 VTGKLVYANY-----GRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFG 103 (183)
T ss_pred eEEEEEEcCC-----CCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeec
Confidence 4668888642 222222 246899999999999999999999999999999999988421000
Q ss_pred ---------c-----------c--c---cccccceEEEchhhHHHHHHHHhhc
Q 045236 270 ---------L-----------I--A---DSHLIPATMVGAIAGDKIREYIKLS 297 (604)
Q Consensus 270 ---------~-----------~--~---~~~~ip~~~i~~~~g~~l~~~~~~~ 297 (604)
. . . .-..||++-|+..++..|+..+.-.
T Consensus 104 ~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 104 HVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred ceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 0 0 0 1235899999999999999987544
No 65
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0015 Score=76.62 Aligned_cols=98 Identities=22% Similarity=0.231 Sum_probs=57.8
Q ss_pred CceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCC-cEEEEcccCCCCC-CCC--cccHHHHHHHhhhcCCcEEE
Q 045236 71 GEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGV-DVISLSVGASGYA-PQY--DQDSIAIGSFGAAQHGVVVS 146 (604)
Q Consensus 71 g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gv-dVIn~SlG~~~~~-~~~--~~~~~~~a~~~a~~~Gi~vV 146 (604)
....-+||+|+|..|-+ ..+ .......|+..-...=+ -+|-+||+...+. ..+ .-+.+....+.|.++||.++
T Consensus 286 E~s~A~AP~A~I~lvva--p~~-~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 286 EWSHAMAPKANIDLVVA--PNP-LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hhhhccCccCceEEEEc--CCC-ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 33578899999998866 211 11122222222111101 3334566644211 111 23455666667789999999
Q ss_pred EcCCCCCCCCCC--------cccCCCceEeecc
Q 045236 147 CSAGNSGPGPFT--------ATNIAPWILTVGA 171 (604)
Q Consensus 147 ~AAGN~G~~~~~--------~~~~ap~vitVgA 171 (604)
+|+|.+|....+ .+..+|||++||-
T Consensus 363 AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999866542 3458899999996
No 66
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=97.14 E-value=0.0011 Score=60.38 Aligned_cols=62 Identities=19% Similarity=0.135 Sum_probs=51.2
Q ss_pred ceeeEEEcCCC-CCCcccCCCCCCCCccccEEEEecCCc------------------hhhhHHHHHHhcCceEEEEEcCC
Q 045236 204 FKLHLVYGGDC-GDRFCYMGRLEPSKVQGKIVVCDRGGN------------------ARVEKGAAVKLAGGLGMILANTD 264 (604)
Q Consensus 204 ~~~~lv~~~~~-~~~~C~~~~~~~~~~~gkIvl~~~g~~------------------~~~~~~~~~~~aGa~g~i~~~~~ 264 (604)
...++||.+-. ....|....+...+++||||++.++.| .+..|.+.++++||.|+|++++.
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 46788887633 235688888889999999999998876 47789999999999999999986
Q ss_pred C
Q 045236 265 E 265 (604)
Q Consensus 265 ~ 265 (604)
.
T Consensus 100 ~ 100 (142)
T cd04814 100 A 100 (142)
T ss_pred C
Confidence 5
No 67
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.00 E-value=0.002 Score=58.35 Aligned_cols=63 Identities=33% Similarity=0.296 Sum_probs=51.0
Q ss_pred ceeeEEEcCCCC-CCcccCCCCCCCCccccEEEEecCCch------------hhhHHHHHHhcCceEEEEEcCCCC
Q 045236 204 FKLHLVYGGDCG-DRFCYMGRLEPSKVQGKIVVCDRGGNA------------RVEKGAAVKLAGGLGMILANTDES 266 (604)
Q Consensus 204 ~~~~lv~~~~~~-~~~C~~~~~~~~~~~gkIvl~~~g~~~------------~~~~~~~~~~aGa~g~i~~~~~~~ 266 (604)
...++||.+... ...|....+...+++|||||+.++.+. +.+|.+++.++||.|+|++++...
T Consensus 22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 467888876432 356877788888999999999998763 678999999999999999998543
No 68
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.87 E-value=0.003 Score=58.25 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=50.3
Q ss_pred ceeeEEEcCCCC-CCcccCCCCCCCCccccEEEEecCC------------------chhhhHHHHHHhcCceEEEEEcCC
Q 045236 204 FKLHLVYGGDCG-DRFCYMGRLEPSKVQGKIVVCDRGG------------------NARVEKGAAVKLAGGLGMILANTD 264 (604)
Q Consensus 204 ~~~~lv~~~~~~-~~~C~~~~~~~~~~~gkIvl~~~g~------------------~~~~~~~~~~~~aGa~g~i~~~~~ 264 (604)
.+-++||.+-.. ...|....+...+++|||||+.++. |.+..|..++.+.||.|+|++++.
T Consensus 20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~ 99 (151)
T cd04822 20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGP 99 (151)
T ss_pred ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCC
Confidence 456888876432 3567777778889999999998763 567889999999999999999985
Q ss_pred CC
Q 045236 265 ES 266 (604)
Q Consensus 265 ~~ 266 (604)
..
T Consensus 100 ~~ 101 (151)
T cd04822 100 NS 101 (151)
T ss_pred cc
Confidence 44
No 69
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.65 E-value=0.0047 Score=65.49 Aligned_cols=79 Identities=20% Similarity=0.334 Sum_probs=64.2
Q ss_pred CCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCC------CccccccccccceEEEchhhHHHHHHHHhhcCC
Q 045236 226 PSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDES------GEELIADSHLIPATMVGAIAGDKIREYIKLSQY 299 (604)
Q Consensus 226 ~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~------~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~ 299 (604)
..+.++|++++.||.|.|.+|...++.+||.+++++|+..+ +.........||+++++.++++.+......+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 46789999999999999999999999999999999998432 122223456899999999999999987766665
Q ss_pred CeEEE
Q 045236 300 PTATI 304 (604)
Q Consensus 300 ~~~~i 304 (604)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 55544
No 70
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.57 E-value=0.058 Score=46.15 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCCCCCCceeeeccCCCceEEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccCCCC
Q 045236 491 PGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLG 570 (604)
Q Consensus 491 ~~~ln~ps~~~~~~~~~~~~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~ 570 (604)
+..|+|..+.+ +...+.+.+++|.+.. +..|++.........+++.|..-.+ .+|++.++.|+|.+...
T Consensus 8 P~~ldFG~v~~-----g~~~~~~v~l~N~s~~-p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~---- 76 (102)
T PF14874_consen 8 PKELDFGNVFV-----GQTYSRTVTLTNTSSI-PARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP---- 76 (102)
T ss_pred CCEEEeeEEcc-----CCEEEEEEEEEECCCC-CEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC----
Confidence 44566665443 3567788899999998 8999987654234567777777666 68999999999996543
Q ss_pred CCCceEEEEEEEcCCeEEEEEEEEEe
Q 045236 571 VSPQQSGSIEWSDGVHLVRSPIAVRW 596 (604)
Q Consensus 571 ~~~~~~G~l~~~~~~~~v~~P~~~~~ 596 (604)
.+.+.+.|...-.+..+.+|+-+..
T Consensus 77 -~g~~~~~l~i~~e~~~~~i~v~a~~ 101 (102)
T PF14874_consen 77 -LGDYEGSLVITTEGGSFEIPVKAEV 101 (102)
T ss_pred -CceEEEEEEEEECCeEEEEEEEEEE
Confidence 3568899999877778888887653
No 71
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.008 Score=65.14 Aligned_cols=75 Identities=23% Similarity=0.177 Sum_probs=57.5
Q ss_pred EecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCC
Q 045236 371 IISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 371 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 446 (604)
--.|||.++|..||+.+|.++++|.++..++..++..++...............+. .....+|+|++|...-+..
T Consensus 251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~-~~~h~~g~~~~~~~~~~~~ 325 (431)
T KOG3525|consen 251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGG-LVSHLYGFGLLDAKALVSC 325 (431)
T ss_pred cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCc-eeeeeecccccCcchhhhh
Confidence 34599999999999999999999999999999999999987654443333332122 2335799999998877663
No 72
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=96.04 E-value=0.014 Score=57.39 Aligned_cols=57 Identities=30% Similarity=0.358 Sum_probs=46.0
Q ss_pred ceeeEEEcCCCCCCcccCCCC-----CCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCC
Q 045236 204 FKLHLVYGGDCGDRFCYMGRL-----EPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDE 265 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~-----~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~ 265 (604)
...++||.+- |....+ ...+++|||||++++.+.+.+|+++|+++||+|+|+|++..
T Consensus 45 v~g~lVyvny-----G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 45 VTAELVYANY-----GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred ceEEEEEcCC-----CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 4678888753 433332 25689999999999999889999999999999999999854
No 73
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.86 E-value=0.011 Score=53.86 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=36.4
Q ss_pred CCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCC
Q 045236 227 SKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDE 265 (604)
Q Consensus 227 ~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~ 265 (604)
-+++|||+|++.|...+..|+++|++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999999999999999999999999999998843
No 74
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.10 E-value=0.032 Score=50.54 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=72.5
Q ss_pred eeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc----------cccc
Q 045236 205 KLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL----------IADS 274 (604)
Q Consensus 205 ~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~----------~~~~ 274 (604)
..+||.+... ..|.... +.-+..+.|.|++||+|+|..|..+++++||.++|+.++....+.. ..+.
T Consensus 65 ~~~lV~adPp--~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~ 141 (193)
T KOG3920|consen 65 NLELVLADPP--HACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDR 141 (193)
T ss_pred CcceeecCCh--hHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccc
Confidence 4566665443 4475422 3446788999999999999999999999999999998765443322 1245
Q ss_pred cccceEEEchhhHHHHHHHHhhcCCCeEEEEeee
Q 045236 275 HLIPATMVGAIAGDKIREYIKLSQYPTATIVFRG 308 (604)
Q Consensus 275 ~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 308 (604)
..+|++++-..+|..+..-++.....-+.|..+.
T Consensus 142 AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 142 ANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred cCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 6899999999998877777766655555554443
No 75
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.083 Score=54.94 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=62.6
Q ss_pred CcccCCCC---CCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccc----cccccceEEEchhhHHH
Q 045236 217 RFCYMGRL---EPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIA----DSHLIPATMVGAIAGDK 289 (604)
Q Consensus 217 ~~C~~~~~---~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~----~~~~ip~~~i~~~~g~~ 289 (604)
+.|++..- ........++|+.||+|.|.+|+.+|+++|..++|+||+....+.... ....++.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45765432 234567789999999999999999999999999999998666543322 45678999999999999
Q ss_pred HHHHHhhc
Q 045236 290 IREYIKLS 297 (604)
Q Consensus 290 l~~~~~~~ 297 (604)
|..|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99875443
No 76
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=93.65 E-value=0.31 Score=39.55 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=39.0
Q ss_pred CceEEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeecc
Q 045236 507 NDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGL 566 (604)
Q Consensus 507 ~~~~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~ 566 (604)
+.+.+++.+|+|.|.......++++..|.|-++...|..+.--++|++++++++|++...
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 467899999999997512457888889999998888887764478999999999998865
No 77
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.21 E-value=0.34 Score=45.06 Aligned_cols=61 Identities=18% Similarity=0.058 Sum_probs=42.0
Q ss_pred ceeeEEEcCCCCCC-cccCCCCCCCCccccEEEEecCCch-------------------hhhHHHHHHhcCceEEEEEcC
Q 045236 204 FKLHLVYGGDCGDR-FCYMGRLEPSKVQGKIVVCDRGGNA-------------------RVEKGAAVKLAGGLGMILANT 263 (604)
Q Consensus 204 ~~~~lv~~~~~~~~-~C~~~~~~~~~~~gkIvl~~~g~~~-------------------~~~~~~~~~~aGa~g~i~~~~ 263 (604)
...+|||.+-.-.. .-..+.+...|++||||++.+++.. ...|.+.+.+.||.|+|++..
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 45677776532110 0122456678999999999865432 234899999999999999987
Q ss_pred C
Q 045236 264 D 264 (604)
Q Consensus 264 ~ 264 (604)
.
T Consensus 102 ~ 102 (157)
T cd04821 102 T 102 (157)
T ss_pred C
Confidence 4
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=88.57 E-value=10 Score=33.25 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=40.6
Q ss_pred eEEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccC
Q 045236 509 VVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLD 567 (604)
Q Consensus 509 ~~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~ 567 (604)
.-.++.+++|.... +.+|++++..++|+++......+++ .+|++.++.+.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~-~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQ-PRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS--EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCC-CEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 44678899999998 9999999999889999665578888 689999999999988763
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=84.35 E-value=21 Score=31.67 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=52.6
Q ss_pred CCceEEEEEEEeccCCCCceEEEEEEEC----CCCc--------------E-----EEEEcceEEEcccceeEEEEEEEE
Q 045236 506 NNDVVKYKRVVKNVGSSVDAVYEVKVNA----PPNV--------------A-----VNVWPSKLAFSAEKKALAYEITFS 562 (604)
Q Consensus 506 ~~~~~t~~rtv~n~~~~~~~ty~~~~~~----~~g~--------------~-----v~v~p~~~~~~~~~~~~~~~v~~~ 562 (604)
.+++.++..+|+|.++. +.+|.+++.. ..|+ . +.-.|..+++ +++++++++++++
T Consensus 25 P~q~~~l~v~i~N~s~~-~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl-~~~~sk~V~~~i~ 102 (121)
T PF06030_consen 25 PGQKQTLEVRITNNSDK-EITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTL-PPNESKTVTFTIK 102 (121)
T ss_pred CCCEEEEEEEEEeCCCC-CEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEE-CCCCEEEEEEEEE
Confidence 35788999999999998 8999887653 1110 0 1112445777 6899999999999
Q ss_pred eeccCCCCCCCceEEEEEEE
Q 045236 563 SVGLDGLGVSPQQSGSIEWS 582 (604)
Q Consensus 563 ~~~~~~~~~~~~~~G~l~~~ 582 (604)
.+... -.+.+-|.|.+.
T Consensus 103 ~P~~~---f~G~ilGGi~~~ 119 (121)
T PF06030_consen 103 MPKKA---FDGIILGGIYFS 119 (121)
T ss_pred cCCCC---cCCEEEeeEEEE
Confidence 98864 578888888875
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=84.15 E-value=9 Score=41.40 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=59.1
Q ss_pred CceEEEEEEEeccCCCCceE-EEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccCCCCCCCceEEEEEEE
Q 045236 507 NDVVKYKRVVKNVGSSVDAV-YEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWS 582 (604)
Q Consensus 507 ~~~~t~~rtv~n~~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~l~~~ 582 (604)
+...+..-.+.|.|+. +.| ..+++..|.|-++.|.|.++---++++++++.+|++++... ..+-++=+|+-+
T Consensus 396 Gee~~i~i~I~NsGna-~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a---~aGdY~i~i~~k 468 (513)
T COG1470 396 GEEKTIRISIENSGNA-PLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDA---GAGDYRITITAK 468 (513)
T ss_pred CccceEEEEEEecCCC-ccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCC---CCCcEEEEEEEe
Confidence 4567888899999987 554 68899999999999999987666899999999999998874 456666666666
No 81
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=70.77 E-value=36 Score=30.97 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=49.4
Q ss_pred EEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccCCCCCCCceEEEEEEE
Q 045236 510 VKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWS 582 (604)
Q Consensus 510 ~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~l~~~ 582 (604)
+.+-..+-|.....=...+++...-.++++--.|..+++ .+++.++++.+++..+. ..+..||.|++.
T Consensus 71 IvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSt----etGvIfG~I~Yd 138 (140)
T PF07718_consen 71 IVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSST----ETGVIFGNIVYD 138 (140)
T ss_pred EEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEec----cCCEEEEEEEEe
Confidence 334444556554311224455555567888888999999 68999999999999988 579999999986
No 82
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=68.20 E-value=50 Score=28.90 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=46.6
Q ss_pred eEEEEEEEeccCCCCceEEEEEEEC---CCC----cEEEEEcceEEEcccceeEEEEEEEEeeccCCCCCCCceEEEEEE
Q 045236 509 VVKYKRVVKNVGSSVDAVYEVKVNA---PPN----VAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEW 581 (604)
Q Consensus 509 ~~t~~rtv~n~~~~~~~ty~~~~~~---~~g----~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~l~~ 581 (604)
..+.+.+|+|.++. +..+.+.+.. ... -.+-+.|..+.+ ++|+++.+.| +...... .+....=+|.+
T Consensus 15 ~~~~~i~v~N~~~~-~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~---~~~E~~yrl~~ 88 (122)
T PF00345_consen 15 QRSASITVTNNSDQ-PYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLP---IDRESLYRLSF 88 (122)
T ss_dssp SSEEEEEEEESSSS-EEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS----SSS-EEEEEEE
T ss_pred CCEEEEEEEcCCCC-cEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCC---CCceEEEEEEE
Confidence 34778999999987 7777777764 111 257899999999 6899999999 6644422 34444445665
Q ss_pred E
Q 045236 582 S 582 (604)
Q Consensus 582 ~ 582 (604)
.
T Consensus 89 ~ 89 (122)
T PF00345_consen 89 R 89 (122)
T ss_dssp E
T ss_pred E
Confidence 5
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=59.43 E-value=1.4e+02 Score=32.74 Aligned_cols=59 Identities=8% Similarity=0.148 Sum_probs=47.2
Q ss_pred CceEEEEEEEeccCCCCceEEEEEEE-CCCCcEEEEEcc-----eEEEcccceeEEEEEEEEeeccC
Q 045236 507 NDVVKYKRVVKNVGSSVDAVYEVKVN-APPNVAVNVWPS-----KLAFSAEKKALAYEITFSSVGLD 567 (604)
Q Consensus 507 ~~~~t~~rtv~n~~~~~~~ty~~~~~-~~~g~~v~v~p~-----~~~~~~~~~~~~~~v~~~~~~~~ 567 (604)
..+..++.++.|.|.. +.+|..++. .|+|-+...+-. ++.+ ++||++.++|.+.+....
T Consensus 283 ~~t~sf~V~IeN~g~~-~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na 347 (513)
T COG1470 283 STTASFTVSIENRGKQ-DDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNA 347 (513)
T ss_pred CCceEEEEEEccCCCC-CceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCC
Confidence 3467889999999999 999999998 788877665533 4455 589999999999987653
No 84
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=57.01 E-value=57 Score=27.60 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=40.1
Q ss_pred ceEEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeecc
Q 045236 508 DVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGL 566 (604)
Q Consensus 508 ~~~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~ 566 (604)
...+...+++|.++. .-.|.+....|.. ..|.|..-.+ +++++.++.|++.....
T Consensus 18 ~~~~~~l~l~N~s~~-~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~~~ 72 (109)
T PF00635_consen 18 KQQSCELTLTNPSDK-PIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPFDF 72 (109)
T ss_dssp S-EEEEEEEEE-SSS-EEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SSST
T ss_pred ceEEEEEEEECCCCC-cEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEeccc
Confidence 346777899999998 7888888877765 4567998777 68999999999988554
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=54.75 E-value=47 Score=36.34 Aligned_cols=56 Identities=9% Similarity=0.056 Sum_probs=47.0
Q ss_pred eEEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeecc
Q 045236 509 VVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGL 566 (604)
Q Consensus 509 ~~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~ 566 (604)
.-..+.++.|.... +.+|+++++..++.++...+..+++ ++||..++.|.+.....
T Consensus 347 ~N~Y~~~i~Nk~~~-~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 347 ENTYTLKILNKTEQ-PHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEEECCCC-CEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEechh
Confidence 45678899999988 9999999999889888876457888 68999999999888654
No 86
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=53.28 E-value=40 Score=27.25 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=29.9
Q ss_pred EEEEEcceEEEcccceeEEEEEEEEeeccCCCCCCCceEEEEEEEcCC
Q 045236 538 AVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGV 585 (604)
Q Consensus 538 ~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~l~~~~~~ 585 (604)
.+++.|..+++ ..|+++.|+++++.... .- ...++|+...
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~------~~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSA------KV-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCC------Cc-cceEEEEECC
Confidence 57888999998 58999999999765543 12 6788998543
No 87
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=46.62 E-value=1.1e+02 Score=26.51 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=35.3
Q ss_pred eeec-CCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcccCC
Q 045236 74 RGMA-VKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGAS 120 (604)
Q Consensus 74 ~GvA-P~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG~~ 120 (604)
.... ++++|+.+ +.+.||....++.-++++.+.|+|+|-+|--..
T Consensus 31 ~~y~~~~~elvgf--~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 31 ARYDDEDVELVGF--FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred ccCCCCCeEEEEE--eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 4444 46777775 455678899999999999999999999987655
No 88
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=44.41 E-value=24 Score=24.75 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=18.7
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc
Q 045236 386 AALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 386 aALl~q~~P~~sp~~Iks~L~~T 408 (604)
+--|++.+|+|++..|+..|...
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHc
Confidence 44678999999999999999664
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=44.35 E-value=1e+02 Score=25.24 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=33.0
Q ss_pred CceEEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEee
Q 045236 507 NDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSV 564 (604)
Q Consensus 507 ~~~~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~ 564 (604)
+...+++.+|+|.|......+.+.+... |..+. ....-.+ .+|++.++++++...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~~-~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSVS-TVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEEE-EEEESEB--TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Cceec-cEEECCc-CCCcEEEEEEEEEeC
Confidence 4688999999999986234566666543 33331 1111245 578888888888776
No 90
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=42.35 E-value=29 Score=35.75 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=49.6
Q ss_pred eeeecCCCeEEEEEeecCCC-------CCHH----------HHHHHHHHHHHCCCcEEEEcccCCCCC----------CC
Q 045236 73 ARGMAVKARIAVYKICWSPG-------CFDS----------DILAAMDQAIADGVDVISLSVGASGYA----------PQ 125 (604)
Q Consensus 73 ~~GvAP~A~l~~~kv~~~~g-------~~~~----------dil~aid~A~~~gvdVIn~SlG~~~~~----------~~ 125 (604)
++-+||-++|-+-..+|... +..+ .-+.-+++|++.|.+||+ |.|..... ..
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 67889999988776666431 1111 113446688999999997 77765211 12
Q ss_pred CcccHHHHHHHhhh-----cCCcEEEEcCC
Q 045236 126 YDQDSIAIGSFGAA-----QHGVVVSCSAG 150 (604)
Q Consensus 126 ~~~~~~~~a~~~a~-----~~Gi~vV~AAG 150 (604)
...||+++...+-. ..||.||+|+-
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~E 245 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSLE 245 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEecC
Confidence 34578888776543 45888999874
No 91
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=37.32 E-value=98 Score=32.17 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=53.9
Q ss_pred ecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCC----CcEEEEcccCCCCC--CCCcccHHHHHHHhhhcCCcEEEEcC
Q 045236 76 MAVKARIAVYKICWSPGCFDSDILAAMDQAIADG----VDVISLSVGASGYA--PQYDQDSIAIGSFGAAQHGVVVSCSA 149 (604)
Q Consensus 76 vAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~g----vdVIn~SlG~~~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AA 149 (604)
-.|.++|..|.+.-.+.....+|++||+.+-+.+ +|||-+-=|+.+.. +.|.+..+..++ .+.-+.|+.+-
T Consensus 38 r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai---~~~~~PvisaI 114 (319)
T PF02601_consen 38 RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAI---AASPIPVISAI 114 (319)
T ss_pred hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHH---HhCCCCEEEec
Confidence 3578888888886654477788999999998765 99999999987411 233334444333 35679999999
Q ss_pred CCCC
Q 045236 150 GNSG 153 (604)
Q Consensus 150 GN~G 153 (604)
|=+-
T Consensus 115 GHe~ 118 (319)
T PF02601_consen 115 GHET 118 (319)
T ss_pred CCCC
Confidence 8764
No 92
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=36.55 E-value=96 Score=22.07 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=24.6
Q ss_pred EEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEE
Q 045236 514 RVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITF 561 (604)
Q Consensus 514 rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~ 561 (604)
.+++|.|+. +.... ++...=|- .+++.+.-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~-~L~I~-~v~tsCgC-t~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDS-PLVIT-DVQTSCGC-TTAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCC-cEEEE-EeeEccCC-EEeeCCcceE-CCCCEEEEEEEC
Confidence 578899987 44432 22222232 2223333345 689998888874
No 93
>PRK15019 CsdA-binding activator; Provisional
Probab=32.35 E-value=44 Score=30.72 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=27.8
Q ss_pred eEecCcccchhHHHHHHHHHHHhCCCCCHHHHHH
Q 045236 370 NIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKS 403 (604)
Q Consensus 370 ~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks 403 (604)
-.+.|.| =|+.|-|.+|||.+.+-..+|+||.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444665 57999999999999999999999876
No 94
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=31.20 E-value=48 Score=30.14 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=28.4
Q ss_pred eEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHH
Q 045236 370 NIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSA 404 (604)
Q Consensus 370 ~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~ 404 (604)
-.+.|.| =|+.|-|++|||.+.+-+.+|+||.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 4455666 589999999999999999999998743
No 95
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=30.09 E-value=3.4e+02 Score=22.91 Aligned_cols=57 Identities=9% Similarity=0.043 Sum_probs=36.8
Q ss_pred CceEEEEEEEeccCCCCc-eEEEE-----EEECCCCcE---EEEEcceEEEcccceeEEEEEEEEeecc
Q 045236 507 NDVVKYKRVVKNVGSSVD-AVYEV-----KVNAPPNVA---VNVWPSKLAFSAEKKALAYEITFSSVGL 566 (604)
Q Consensus 507 ~~~~t~~rtv~n~~~~~~-~ty~~-----~~~~~~g~~---v~v~p~~~~~~~~~~~~~~~v~~~~~~~ 566 (604)
++..++..+++|..+. . .+-++ ++.. .|+. ....-..+++ +++++.+++++|.....
T Consensus 14 G~d~~v~v~~~N~~~~-~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSE-PLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQY 79 (107)
T ss_dssp TSEEEEEEEEEE-SSS--EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHSH
T ss_pred CCCEEEEEEEEeCCcC-ccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEceeE
Confidence 4678899999999987 5 44222 2333 4664 4555666677 58999999999987664
No 96
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=29.95 E-value=45 Score=25.04 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=24.7
Q ss_pred ccceEecCcccchhHHHHHHH------HHHHhCCCCCHHHHHHHHH
Q 045236 367 VDFNIISGTSMSCPHVSGLAA------LLRKAYPDWSPAAIKSALM 406 (604)
Q Consensus 367 ~~y~~~sGTSMAaP~VAG~aA------Ll~q~~P~~sp~~Iks~L~ 406 (604)
++--.+-||=+..=.|....+ -|.+.||++++++|+++|.
T Consensus 9 ~G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 9 GGQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp GG--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CCcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 344566677777666665532 3566799999999999984
No 97
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=29.35 E-value=25 Score=15.73 Aligned_cols=6 Identities=67% Similarity=0.972 Sum_probs=4.2
Q ss_pred cccCCC
Q 045236 322 AFSSRG 327 (604)
Q Consensus 322 ~fSS~G 327 (604)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577776
No 98
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=28.19 E-value=1.3e+02 Score=32.89 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=55.9
Q ss_pred ecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCC-CcEEEEcccCCCC--CCCCcccHHHHHHHhhhcCCcEEEEcCCCC
Q 045236 76 MAVKARIAVYKICWSPGCFDSDILAAMDQAIADG-VDVISLSVGASGY--APQYDQDSIAIGSFGAAQHGVVVSCSAGNS 152 (604)
Q Consensus 76 vAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~g-vdVIn~SlG~~~~--~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~ 152 (604)
=.|.+++++|.+.-.+......|++||+.|-+.+ +|||=+-=|+.+- -+.+-++.+..++ .+..+.||.|-|-+
T Consensus 159 R~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi---~~s~iPvISAVGHE 235 (440)
T COG1570 159 RFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAI---AASRIPVISAVGHE 235 (440)
T ss_pred hCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHH---HhCCCCeEeecccC
Confidence 3588999999987665577888999999999887 9999999888731 1333444555443 36788899998876
Q ss_pred C
Q 045236 153 G 153 (604)
Q Consensus 153 G 153 (604)
-
T Consensus 236 t 236 (440)
T COG1570 236 T 236 (440)
T ss_pred C
Confidence 4
No 99
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=27.25 E-value=92 Score=21.77 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc
Q 045236 385 LAALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 385 ~aALl~q~~P~~sp~~Iks~L~~T 408 (604)
.+..|++.+|+++...|+..|...
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHc
Confidence 456789999999999999999854
No 100
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=26.97 E-value=63 Score=29.39 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=27.8
Q ss_pred eEecCcccchhHHHHHHHHHHHhCCCCCHHHHHH
Q 045236 370 NIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKS 403 (604)
Q Consensus 370 ~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks 403 (604)
-.+.|.| =|+.|-|.+|||.+.+-..+|+||..
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444666 68999999999999999999999874
No 101
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.77 E-value=60 Score=29.68 Aligned_cols=32 Identities=34% Similarity=0.301 Sum_probs=25.9
Q ss_pred eEecCcccchhHHHHHHHHHHHhCCCCCHHHHH
Q 045236 370 NIISGTSMSCPHVSGLAALLRKAYPDWSPAAIK 402 (604)
Q Consensus 370 ~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik 402 (604)
-.+.|=|= |++|.|++|++++.+-..||++|.
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~ 103 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEIL 103 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHH
Confidence 34445554 589999999999999999999975
No 102
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=26.20 E-value=54 Score=21.90 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.5
Q ss_pred cchhHHHHHHHHH
Q 045236 377 MSCPHVSGLAALL 389 (604)
Q Consensus 377 MAaP~VAG~aALl 389 (604)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999987744
No 103
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=25.46 E-value=72 Score=28.42 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=26.5
Q ss_pred EecCcccchhHHHHHHHHHHHhCCCCCHHHHHHH
Q 045236 371 IISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSA 404 (604)
Q Consensus 371 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~ 404 (604)
.+.|.|= |+.|-|++|||.+.+-+.+|+||.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4556665 57999999999999999999998754
No 104
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=25.15 E-value=1.4e+02 Score=32.63 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=53.5
Q ss_pred cCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCC--CCCCcccHHHHHHHhhhcCCcEEEEcCCCCC
Q 045236 77 AVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGY--APQYDQDSIAIGSFGAAQHGVVVSCSAGNSG 153 (604)
Q Consensus 77 AP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG~~~~--~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G 153 (604)
.|.++|+.|.+.-.+.....+|++||+.+-..+.|||-+-=|+.+. -+.|.+..+..++ .+.-+.||.|-|=+-
T Consensus 160 ~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai---~~~~~Pvis~IGHE~ 235 (438)
T PRK00286 160 FPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAI---AASRIPVISAVGHET 235 (438)
T ss_pred CCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHH---HcCCCCEEEeccCCC
Confidence 4778999888866544677889999999877678999999998741 1333344454443 356889999998764
No 105
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=24.66 E-value=1.9e+02 Score=34.22 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=35.1
Q ss_pred ceEEEEEEEeccCCCCceEEE--EEEECCCCcEEEEEc-------ceEEEcccceeEEEEEEEEeecc
Q 045236 508 DVVKYKRVVKNVGSSVDAVYE--VKVNAPPNVAVNVWP-------SKLAFSAEKKALAYEITFSSVGL 566 (604)
Q Consensus 508 ~~~t~~rtv~n~~~~~~~ty~--~~~~~~~g~~v~v~p-------~~~~~~~~~~~~~~~v~~~~~~~ 566 (604)
+..+++.+|+|+|+. +..-. +=+..|.+- +. .| .++.+ ++||+++++++++....
T Consensus 667 ~~i~v~v~V~NtG~~-~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~L 730 (765)
T PRK15098 667 GKVTASVTVTNTGKR-EGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIEAL 730 (765)
T ss_pred CeEEEEEEEEECCCC-CccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHHHh
Confidence 468899999999986 44333 333344321 11 22 23445 68999999999987654
Done!