Query 045237
Match_columns 758
No_of_seqs 465 out of 4721
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 11:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.9E-69 8.5E-74 621.0 28.8 643 48-715 111-865 (889)
2 PLN03210 Resistant to P. syrin 100.0 7E-55 1.5E-59 530.7 33.3 638 11-732 133-904 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2E-29 4.4E-34 263.8 8.0 228 98-338 1-283 (287)
4 PLN00113 leucine-rich repeat r 99.9 5.1E-25 1.1E-29 269.1 17.0 270 453-732 139-415 (968)
5 PLN00113 leucine-rich repeat r 99.9 3.4E-25 7.4E-30 270.6 14.5 318 403-732 117-463 (968)
6 KOG0444 Cytoskeletal regulator 99.9 1.3E-27 2.8E-32 249.9 -7.2 328 404-751 55-393 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 1.8E-24 3.8E-29 226.6 -9.1 309 403-732 31-350 (1255)
8 KOG4194 Membrane glycoprotein 99.8 9.4E-22 2E-26 205.3 3.9 311 403-732 101-427 (873)
9 KOG0472 Leucine-rich repeat pr 99.8 5.8E-22 1.3E-26 198.4 -4.6 276 447-732 107-539 (565)
10 PLN03210 Resistant to P. syrin 99.8 1.8E-18 3.9E-23 211.9 18.4 265 426-714 589-910 (1153)
11 KOG4194 Membrane glycoprotein 99.8 1.6E-20 3.5E-25 196.2 -1.6 308 404-728 125-446 (873)
12 KOG0472 Leucine-rich repeat pr 99.7 3.6E-21 7.7E-26 192.8 -10.9 248 448-736 62-312 (565)
13 KOG0618 Serine/threonine phosp 99.7 1.6E-18 3.5E-23 190.9 -4.8 285 406-707 47-440 (1081)
14 KOG0618 Serine/threonine phosp 99.6 2.7E-17 5.8E-22 181.4 -1.5 140 583-727 252-436 (1081)
15 PRK15370 E3 ubiquitin-protein 99.6 2.1E-15 4.6E-20 173.1 10.1 240 454-732 178-426 (754)
16 PRK15387 E3 ubiquitin-protein 99.6 6.9E-15 1.5E-19 167.8 13.5 230 455-732 223-456 (788)
17 KOG0617 Ras suppressor protein 99.5 9.3E-17 2E-21 143.3 -5.7 161 473-645 29-194 (264)
18 PRK15387 E3 ubiquitin-protein 99.5 5.4E-14 1.2E-18 160.6 12.5 248 420-719 216-467 (788)
19 PRK15370 E3 ubiquitin-protein 99.5 3.8E-14 8.2E-19 162.9 7.8 72 455-532 221-292 (754)
20 KOG0617 Ras suppressor protein 99.5 2E-15 4.3E-20 134.9 -4.5 148 452-604 31-182 (264)
21 cd00116 LRR_RI Leucine-rich re 99.4 3.2E-14 6.9E-19 151.4 -3.3 264 447-732 16-318 (319)
22 KOG4237 Extracellular matrix p 99.3 4.5E-14 9.7E-19 142.3 -3.6 269 420-709 61-358 (498)
23 cd00116 LRR_RI Leucine-rich re 99.3 1.6E-13 3.5E-18 146.0 -2.0 263 426-708 23-318 (319)
24 KOG4658 Apoptotic ATPase [Sign 99.3 2.3E-12 5E-17 150.6 5.5 201 421-636 517-730 (889)
25 KOG4237 Extracellular matrix p 99.2 5.3E-13 1.1E-17 134.6 -6.6 266 456-732 69-357 (498)
26 KOG0532 Leucine-rich repeat (L 98.8 1.8E-10 4E-15 121.7 -3.5 153 445-604 89-243 (722)
27 COG4886 Leucine-rich repeat (L 98.8 5.1E-09 1.1E-13 114.8 5.3 177 448-662 110-292 (394)
28 KOG1259 Nischarin, modulator o 98.8 1.7E-09 3.8E-14 105.6 1.2 206 492-715 206-416 (490)
29 KOG0532 Leucine-rich repeat (L 98.8 3.1E-10 6.8E-15 120.0 -4.6 157 426-594 98-256 (722)
30 KOG3207 Beta-tubulin folding c 98.7 1.6E-09 3.6E-14 111.3 -1.4 85 623-708 246-337 (505)
31 PF14580 LRR_9: Leucine-rich r 98.7 2E-08 4.4E-13 94.6 6.0 130 451-603 16-148 (175)
32 COG4886 Leucine-rich repeat (L 98.7 2.1E-08 4.6E-13 109.9 5.8 168 426-604 116-286 (394)
33 KOG1909 Ran GTPase-activating 98.6 2.1E-09 4.4E-14 107.8 -2.6 245 446-709 22-310 (382)
34 KOG4341 F-box protein containi 98.6 1.2E-09 2.7E-14 111.6 -5.1 286 426-741 138-446 (483)
35 KOG3207 Beta-tubulin folding c 98.6 7E-09 1.5E-13 106.8 -0.2 206 474-732 118-337 (505)
36 PF14580 LRR_9: Leucine-rich r 98.4 6.2E-08 1.3E-12 91.3 1.6 101 426-532 19-122 (175)
37 KOG1909 Ran GTPase-activating 98.4 1.8E-08 3.9E-13 101.1 -2.8 243 426-684 30-309 (382)
38 KOG1259 Nischarin, modulator o 98.4 2.6E-08 5.6E-13 97.5 -2.2 127 453-580 283-410 (490)
39 KOG2120 SCF ubiquitin ligase, 98.4 5E-09 1.1E-13 102.5 -8.2 145 560-708 225-374 (419)
40 KOG2120 SCF ubiquitin ligase, 98.4 4.9E-09 1.1E-13 102.6 -8.4 178 545-734 186-376 (419)
41 PF13855 LRR_8: Leucine rich r 98.3 4.8E-07 1E-11 69.8 3.6 59 454-512 1-61 (61)
42 PLN03150 hypothetical protein; 98.2 1.8E-06 3.9E-11 99.5 5.6 95 615-712 434-530 (623)
43 PLN03150 hypothetical protein; 98.1 4.7E-06 1E-10 96.1 7.9 100 455-554 419-525 (623)
44 KOG2982 Uncharacterized conser 98.1 1.1E-06 2.3E-11 86.5 1.1 86 447-532 64-155 (418)
45 PF13855 LRR_8: Leucine rich r 98.1 3.3E-06 7.2E-11 65.1 3.4 57 477-533 1-59 (61)
46 PF12799 LRR_4: Leucine Rich r 98.0 6.9E-06 1.5E-10 58.1 3.9 40 477-516 1-40 (44)
47 KOG0531 Protein phosphatase 1, 97.9 1.1E-06 2.4E-11 96.7 -1.8 219 450-711 91-319 (414)
48 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 57.1 2.7 40 454-493 1-40 (44)
49 KOG0531 Protein phosphatase 1, 97.8 2.3E-06 4.9E-11 94.2 -1.5 166 426-604 95-264 (414)
50 COG5238 RNA1 Ran GTPase-activa 97.8 4.4E-06 9.6E-11 81.2 0.6 240 451-709 27-315 (388)
51 KOG4341 F-box protein containi 97.8 3.3E-07 7.2E-12 94.2 -7.8 275 426-729 164-460 (483)
52 KOG3665 ZYG-1-like serine/thre 97.7 1.3E-05 2.8E-10 92.2 2.0 104 426-532 122-229 (699)
53 PRK15386 type III secretion pr 97.6 0.00012 2.5E-09 77.8 6.9 135 450-604 48-186 (426)
54 PRK15386 type III secretion pr 97.5 9E-05 2E-09 78.6 4.8 128 426-579 52-187 (426)
55 KOG2982 Uncharacterized conser 97.5 1.4E-05 3E-10 78.9 -1.8 78 455-532 46-130 (418)
56 KOG3665 ZYG-1-like serine/thre 97.4 0.00013 2.8E-09 84.1 4.8 125 404-532 122-259 (699)
57 KOG4579 Leucine-rich repeat (L 97.3 5.4E-05 1.2E-09 66.3 0.1 85 449-533 48-133 (177)
58 KOG1859 Leucine-rich repeat pr 97.3 8.1E-06 1.8E-10 89.5 -6.2 20 494-513 103-122 (1096)
59 KOG1859 Leucine-rich repeat pr 97.2 5.5E-06 1.2E-10 90.8 -8.7 108 445-554 178-289 (1096)
60 KOG4579 Leucine-rich repeat (L 96.8 0.00018 4E-09 63.1 -1.3 75 444-518 67-141 (177)
61 KOG1947 Leucine rich repeat pr 96.5 0.00028 6E-09 79.6 -3.1 240 448-733 182-439 (482)
62 COG5238 RNA1 Ran GTPase-activa 96.4 0.0016 3.4E-08 63.9 2.0 250 426-684 30-314 (388)
63 KOG1644 U2-associated snRNP A' 96.3 0.0059 1.3E-07 57.6 4.7 36 695-731 111-150 (233)
64 KOG1947 Leucine rich repeat pr 96.2 0.00039 8.4E-09 78.4 -3.8 175 543-741 242-421 (482)
65 KOG1644 U2-associated snRNP A' 96.1 0.0076 1.6E-07 56.9 4.5 60 455-515 43-103 (233)
66 KOG2739 Leucine-rich acidic nu 95.8 0.0042 9E-08 61.1 1.7 82 450-531 61-151 (260)
67 KOG2123 Uncharacterized conser 95.5 0.002 4.3E-08 63.5 -2.0 98 426-530 19-124 (388)
68 PF00560 LRR_1: Leucine Rich R 95.3 0.0073 1.6E-07 35.5 0.9 17 479-495 2-18 (22)
69 KOG2739 Leucine-rich acidic nu 95.3 0.0045 9.9E-08 60.8 -0.0 84 623-708 65-154 (260)
70 PRK04841 transcriptional regul 95.2 0.42 9.1E-06 58.6 16.7 242 119-386 39-332 (903)
71 cd01128 rho_factor Transcripti 95.2 0.027 5.9E-07 56.8 5.0 86 120-209 24-115 (249)
72 PRK00411 cdc6 cell division co 95.2 0.1 2.2E-06 57.1 10.1 137 94-237 31-185 (394)
73 PF00560 LRR_1: Leucine Rich R 95.1 0.0098 2.1E-07 34.9 1.0 22 501-522 1-22 (22)
74 PRK09376 rho transcription ter 94.8 0.041 8.8E-07 58.3 5.3 83 121-209 178-268 (416)
75 KOG2123 Uncharacterized conser 94.5 0.005 1.1E-07 60.8 -2.3 61 453-515 18-78 (388)
76 COG2909 MalT ATP-dependent tra 94.2 1.1 2.4E-05 51.8 14.9 261 102-388 24-340 (894)
77 TIGR02928 orc1/cdc6 family rep 93.5 0.17 3.8E-06 54.6 7.2 110 95-209 17-141 (365)
78 PF13504 LRR_7: Leucine rich r 93.1 0.061 1.3E-06 29.3 1.5 16 501-516 2-17 (17)
79 PF05729 NACHT: NACHT domain 93.0 0.51 1.1E-05 44.1 8.7 43 195-237 79-132 (166)
80 PF13504 LRR_7: Leucine rich r 92.6 0.076 1.6E-06 28.9 1.4 16 478-493 2-17 (17)
81 PF13401 AAA_22: AAA domain; P 91.9 0.32 7E-06 43.6 5.6 83 146-234 39-125 (131)
82 cd00009 AAA The AAA+ (ATPases 91.7 1.2 2.7E-05 40.2 9.4 120 97-236 2-131 (151)
83 KOG0473 Leucine-rich repeat pr 91.5 0.0052 1.1E-07 59.0 -6.8 85 449-533 37-121 (326)
84 KOG3864 Uncharacterized conser 91.3 0.019 4.2E-07 54.2 -3.2 62 671-732 123-187 (221)
85 TIGR00767 rho transcription te 90.7 0.68 1.5E-05 49.5 7.2 77 131-209 185-267 (415)
86 KOG3864 Uncharacterized conser 89.7 0.025 5.5E-07 53.5 -3.8 88 623-711 101-190 (221)
87 COG1474 CDC6 Cdc6-related prot 89.3 1.3 2.9E-05 47.4 8.2 107 95-209 19-135 (366)
88 PF13306 LRR_5: Leucine rich r 88.8 0.67 1.4E-05 41.3 4.8 81 448-531 6-89 (129)
89 smart00370 LRR Leucine-rich re 88.6 0.41 9E-06 29.2 2.2 21 499-519 1-21 (26)
90 smart00369 LRR_TYP Leucine-ric 88.6 0.41 9E-06 29.2 2.2 21 499-519 1-21 (26)
91 TIGR03015 pepcterm_ATPase puta 88.0 4.4 9.5E-05 41.5 10.9 90 119-217 50-145 (269)
92 PF13306 LRR_5: Leucine rich r 87.9 0.84 1.8E-05 40.7 4.8 97 426-531 12-111 (129)
93 PRK05564 DNA polymerase III su 87.7 6 0.00013 41.7 11.9 123 95-237 6-135 (313)
94 PF13173 AAA_14: AAA domain 87.6 0.93 2E-05 40.6 4.9 50 188-237 52-101 (128)
95 smart00370 LRR Leucine-rich re 84.8 0.66 1.4E-05 28.3 1.7 21 476-496 1-21 (26)
96 smart00369 LRR_TYP Leucine-ric 84.8 0.66 1.4E-05 28.3 1.7 21 476-496 1-21 (26)
97 KOG2543 Origin recognition com 83.9 3 6.5E-05 43.8 6.9 109 93-209 6-127 (438)
98 KOG2227 Pre-initiation complex 80.9 4.4 9.5E-05 43.8 6.9 109 94-208 151-267 (529)
99 PRK11331 5-methylcytosine-spec 78.5 11 0.00025 41.2 9.3 117 95-220 177-298 (459)
100 KOG0473 Leucine-rich repeat pr 77.2 0.12 2.5E-06 50.1 -5.4 66 447-512 58-123 (326)
101 PTZ00112 origin recognition co 75.2 11 0.00025 44.5 8.5 112 94-209 756-881 (1164)
102 TIGR02903 spore_lon_C ATP-depe 74.2 40 0.00086 39.2 12.9 51 185-236 281-335 (615)
103 PRK06893 DNA replication initi 72.2 4.3 9.3E-05 40.6 4.0 37 199-235 93-134 (229)
104 TIGR00635 ruvB Holliday juncti 72.1 17 0.00036 38.1 8.6 63 291-361 225-289 (305)
105 PF01637 Arch_ATPase: Archaeal 71.3 5.3 0.00012 39.5 4.5 39 96-136 2-42 (234)
106 KOG4308 LRR-containing protein 68.5 0.1 2.3E-06 57.8 -9.3 161 444-604 105-299 (478)
107 PF13191 AAA_16: AAA ATPase do 66.2 5.5 0.00012 37.9 3.2 38 96-136 3-46 (185)
108 smart00364 LRR_BAC Leucine-ric 65.8 3.9 8.4E-05 25.0 1.2 17 478-494 3-19 (26)
109 smart00367 LRR_CC Leucine-rich 64.7 3.3 7.2E-05 25.2 0.9 16 696-711 1-16 (26)
110 PRK08116 hypothetical protein; 61.9 15 0.00033 37.6 5.6 86 131-235 131-221 (268)
111 PRK00080 ruvB Holliday junctio 60.2 96 0.0021 32.8 11.6 65 290-362 245-311 (328)
112 smart00365 LRR_SD22 Leucine-ri 59.6 7.6 0.00016 23.8 1.7 17 499-515 1-17 (26)
113 PF13516 LRR_6: Leucine Rich r 57.2 6.2 0.00013 23.4 1.1 15 499-513 1-15 (24)
114 PF13177 DNA_pol3_delta2: DNA 54.9 1.1E+02 0.0023 28.6 9.7 42 196-237 101-144 (162)
115 PRK12402 replication factor C 53.4 49 0.0011 35.0 8.1 40 196-235 124-165 (337)
116 PTZ00202 tuzin; Provisional 51.3 85 0.0018 34.5 9.0 76 86-172 256-336 (550)
117 PRK13342 recombination factor 46.0 91 0.002 34.2 8.9 34 195-231 90-125 (413)
118 PRK04195 replication factor C 42.2 78 0.0017 35.6 7.7 113 95-235 16-140 (482)
119 PRK07003 DNA polymerase III su 41.9 1.9E+02 0.0042 34.2 10.6 42 196-237 118-161 (830)
120 TIGR01242 26Sp45 26S proteasom 38.5 93 0.002 33.5 7.4 16 95-110 124-139 (364)
121 PF05621 TniB: Bacterial TniB 38.2 1.7E+02 0.0037 30.4 8.6 60 146-209 97-157 (302)
122 PHA02544 44 clamp loader, smal 36.7 1.6E+02 0.0035 30.8 8.7 40 197-236 100-142 (316)
123 smart00368 LRR_RI Leucine rich 36.0 27 0.00058 21.7 1.6 14 500-513 2-15 (28)
124 PRK14963 DNA polymerase III su 36.0 27 0.00058 39.4 2.7 39 196-234 115-155 (504)
125 cd01133 F1-ATPase_beta F1 ATP 35.1 80 0.0017 32.3 5.7 84 121-209 78-175 (274)
126 PRK14949 DNA polymerase III su 35.1 1.9E+02 0.0041 34.9 9.4 42 195-236 117-160 (944)
127 PRK14957 DNA polymerase III su 33.9 3E+02 0.0065 31.4 10.5 41 195-235 117-159 (546)
128 TIGR02639 ClpA ATP-dependent C 32.9 84 0.0018 37.5 6.4 20 92-111 453-472 (731)
129 PF00308 Bac_DnaA: Bacterial d 32.0 39 0.00084 33.4 2.9 83 131-235 51-140 (219)
130 KOG3763 mRNA export factor TAP 31.4 17 0.00038 40.2 0.3 79 623-703 218-307 (585)
131 PF02463 SMC_N: RecF/RecN/SMC 31.2 32 0.00069 33.9 2.1 41 197-237 158-201 (220)
132 CHL00095 clpC Clp protease ATP 31.0 1.6E+02 0.0036 35.6 8.5 36 94-129 180-217 (821)
133 PRK08181 transposase; Validate 29.4 1E+02 0.0022 31.6 5.4 37 199-235 169-209 (269)
134 PF04665 Pox_A32: Poxvirus A32 29.3 56 0.0012 32.8 3.4 29 120-152 21-49 (241)
135 PRK08727 hypothetical protein; 28.7 85 0.0018 31.3 4.7 37 199-235 95-136 (233)
136 PRK12608 transcription termina 28.6 1.3E+02 0.0028 32.4 6.1 100 102-208 120-231 (380)
137 PRK14088 dnaA chromosomal repl 28.5 1.1E+02 0.0025 33.8 6.1 82 131-233 147-235 (440)
138 PRK14960 DNA polymerase III su 28.3 3E+02 0.0065 32.2 9.2 42 195-236 116-159 (702)
139 PRK08691 DNA polymerase III su 28.1 4.6E+02 0.01 30.8 10.8 41 196-236 118-160 (709)
140 cd00561 CobA_CobO_BtuR ATP:cor 27.6 59 0.0013 30.3 3.1 49 188-236 85-139 (159)
141 TIGR00362 DnaA chromosomal rep 26.6 89 0.0019 34.2 4.8 82 131-234 153-241 (405)
142 PRK00440 rfc replication facto 25.8 6E+02 0.013 26.2 11.0 39 197-235 102-142 (319)
143 PRK12323 DNA polymerase III su 25.8 5.6E+02 0.012 30.0 10.8 42 195-236 122-165 (700)
144 KOG3763 mRNA export factor TAP 25.7 38 0.00083 37.6 1.7 79 452-531 216-309 (585)
145 PRK14958 DNA polymerase III su 25.4 5.7E+02 0.012 29.0 11.0 40 196-235 118-159 (509)
146 PRK14961 DNA polymerase III su 25.2 4.9E+02 0.011 27.9 10.1 40 196-235 118-159 (363)
147 PRK10865 protein disaggregatio 24.5 2.3E+02 0.005 34.5 8.1 44 93-136 178-225 (857)
148 TIGR03346 chaperone_ClpB ATP-d 24.3 2E+02 0.0043 35.0 7.6 43 94-136 174-220 (852)
149 KOG1514 Origin recognition com 23.4 3.8E+02 0.0082 31.3 8.7 132 95-235 398-549 (767)
150 PF13730 HTH_36: Helix-turn-he 23.0 2.7E+02 0.0059 20.1 5.4 51 301-358 2-55 (55)
151 PRK14969 DNA polymerase III su 22.8 8.1E+02 0.018 27.9 11.6 41 195-235 117-159 (527)
152 PLN03025 replication factor C 22.6 5.5E+02 0.012 26.9 9.8 40 196-235 98-139 (319)
153 PRK00149 dnaA chromosomal repl 22.0 1.4E+02 0.0029 33.3 5.2 45 190-235 205-254 (450)
154 PRK08939 primosomal protein Dn 22.0 2.1E+02 0.0045 29.9 6.3 39 197-235 217-261 (306)
155 PRK07940 DNA polymerase III su 21.9 7.1E+02 0.015 27.1 10.5 42 196-237 116-159 (394)
156 TIGR02397 dnaX_nterm DNA polym 21.4 9E+02 0.02 25.5 11.4 41 196-236 116-158 (355)
157 TIGR00678 holB DNA polymerase 21.0 6.7E+02 0.015 23.6 9.3 40 196-235 95-136 (188)
158 TIGR03346 chaperone_ClpB ATP-d 20.9 3.4E+02 0.0073 33.1 8.6 19 93-111 565-583 (852)
159 smart00382 AAA ATPases associa 20.9 3.4E+02 0.0075 23.2 7.0 47 188-234 68-125 (148)
160 PRK13341 recombination factor 20.3 4.8E+02 0.01 31.1 9.3 35 196-233 108-144 (725)
161 PRK14951 DNA polymerase III su 20.2 7.8E+02 0.017 28.6 10.8 39 196-234 123-163 (618)
162 TIGR03420 DnaA_homol_Hda DnaA 20.2 1.7E+02 0.0038 28.6 5.1 36 200-235 93-133 (226)
163 COG0542 clpA ATP-binding subun 20.0 1.9E+02 0.0042 34.2 5.9 129 89-234 487-643 (786)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-69 Score=620.97 Aligned_cols=643 Identities=25% Similarity=0.341 Sum_probs=459.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcc--cccc-cc--CCCCcccccccccceeecchhhHHHHHHHhcCCCCCCCccccC
Q 045237 48 LSEIEIITTLLRDYKSDINRLLIQLW--NVEE-DV--DRPDVLSILNDINYFVYESEKAIDTFFTTIMQPQSSESESEST 122 (758)
Q Consensus 48 ~~~~~~~~~~l~~i~~~~~~~~~~~~--~~~~-~~--~~~~~~s~~~~~~~~v~Gr~~~~~~i~~~L~~~~~~~~~~~~~ 122 (758)
...+..+.+++.++...+..+..+.. .+.. .. ...++.+...+.. +|.+..++++++.|++... ...+
T Consensus 111 ~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---VG~e~~~~kl~~~L~~d~~----~iv~ 183 (889)
T KOG4658|consen 111 VSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD---VGLETMLEKLWNRLMEDDV----GIVG 183 (889)
T ss_pred hhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc---ccHHHHHHHHHHHhccCCC----CEEE
Confidence 34444455556666666666554331 1111 11 1122333333322 5999999999999988543 2344
Q ss_pred cceehHHH----HHHHhCccc-ccccCCeeEEEEECCCCCHHHHHHHHHHhhCCCCCCccccCchhhhHHHHHHHhcCCC
Q 045237 123 SYKDALVG----LQKAFNSNH-VKFYFDCRAWVRVSIQYNFKKILDDIIKSVMPASGLSEIIGKDYTLKKSILRDYLTNK 197 (758)
Q Consensus 123 ~~~~~ivG----a~~vy~~~~-~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k 197 (758)
++++|+|| |+.|||+.. ++.+||.++||+||+.|+..+|+++|+..++.....+. ....++++ ..|.+.|++|
T Consensus 184 i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~-~~~~~~~~-~~i~~~L~~k 261 (889)
T KOG4658|consen 184 IYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWE-DKEEDELA-SKLLNLLEGK 261 (889)
T ss_pred EECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccc-hhhHHHHH-HHHHHHhccC
Confidence 45556666 899999987 99999999999999999999999999999988443211 12347888 9999999999
Q ss_pred eEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCCccc---------------cCc---ccc-------------cch
Q 045237 198 KYMTVLDDIYHDMIWNDLREALPDYQNGSRVLITVVDPDI---------------LTS---FEL-------------ENG 246 (758)
Q Consensus 198 r~LlVLDDvw~~~~w~~l~~~~~~~~~gS~iivTTR~~~v---------------L~~---~~l-------------~~~ 246 (758)
||+|||||||+..+|+.++.|+|...+||||++|||++.| |.. |++ +.+
T Consensus 262 rfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i 341 (889)
T KOG4658|consen 262 RFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDI 341 (889)
T ss_pred ceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccH
Confidence 9999999999999999999999999999999999999999 333 777 447
Q ss_pred hhhcccc-----------cccccccc-ccccccchhhhhhccccchhhhhh----cCCCchhHHHhhccCCcchhHHHHH
Q 045237 247 EKIGSDS-----------VLVGGPLF-RIKYEGWQFFLLYCGCKSLESQMM----EMENEPTALLFCSIFELPLYLKFCC 310 (758)
Q Consensus 247 ~~i~~~i-----------~~~g~~L~-~~~~~~W~~~~~~~~l~~l~~~~~----~~~~~i~~~L~~Sy~~L~~~~k~cF 310 (758)
+++|+++ +++|+.|+ |.+.++|+++ .+.+.+... +.++.|+++|++|||.||+++|.||
T Consensus 342 ~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~-----~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CF 416 (889)
T KOG4658|consen 342 EELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRA-----LNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCF 416 (889)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHH-----HccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHH
Confidence 8888888 89999999 8889999999 888877743 2237899999999999998899999
Q ss_pred hHhcccCCCceeeHhHHHHHHHHcCCCC-----CChHHHHHHHHHHHHhCccccccccCCCCCeeEEEcCHHHHHHHHHH
Q 045237 311 FYLCVFYGNLEISTRQLYQLWMAEGFVA-----HNSEANAEEYLKELISRGLIKVGKRSAGGKIKTCSVPSSVWARLVVL 385 (758)
Q Consensus 311 l~~a~Fp~~~~i~~~~Li~~w~a~g~i~-----~~~~~~~~~~~~~Lv~~sll~~~~~~~~~~~~~~~mHdli~dla~~i 385 (758)
+|||+||+||+|+++.||.+|+|+||++ ..+++.|++|+.+||+++|++..... ++...|+|||++||||.++
T Consensus 417 LycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~i 494 (889)
T KOG4658|consen 417 LYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWI 494 (889)
T ss_pred HhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHH
Confidence 9999999999999999999999999997 67789999999999999999987754 5567999999999999999
Q ss_pred hc-----ccCeEEEeCC-----CcccCCCceeEEEeeCCCCccccccccc-cccceEEeccccC-CcchhhhhHHHhccC
Q 045237 386 AA-----KMKFVMVLDL-----GLVEELRTIKRFAVPKNLTKFVSLEHID-TYLHSLQNFALES-DHSALLDCENICKKF 453 (758)
Q Consensus 386 ~~-----~e~~~~~~~~-----~~~~~~~~~r~Ls~~~~~~~~~~~~~~~-~~Lr~L~~~~~~~-~~~~~~~~~~~~~~l 453 (758)
++ +++++...+. .....+..+||+++. +........... +++++|.+..+.. .. .....+|..|
T Consensus 495 as~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~-~~~~~~~~~~~~~~~L~tLll~~n~~~l~---~is~~ff~~m 570 (889)
T KOG4658|consen 495 ASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM-NNKIEHIAGSSENPKLRTLLLQRNSDWLL---EISGEFFRSL 570 (889)
T ss_pred hccccccccceEEECCcCccccccccchhheeEEEEe-ccchhhccCCCCCCccceEEEeecchhhh---hcCHHHHhhC
Confidence 99 6775554431 122356788999999 555555666666 8899999999863 11 5677889999
Q ss_pred CeeEEEEcCCCC-CCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCC-cCcccchhhcccccCcEEEcC
Q 045237 454 KLLRVLNMGSLV-LDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSS-YIDHTPEDIWNMHKLMHLNFG 531 (758)
Q Consensus 454 ~~Lr~L~L~~~~-l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l~ 531 (758)
+.||+|||++|. +..+|.+|++|.|||||+++++.+..+|..+++|..|.+|++..+ .+..+|.....|++|++|.+.
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 999999999876 779999999999999999999999999999999999999999999 666667767779999999887
Q ss_pred CCC--CCCCCCCccccCcccccccccCCCCCCccccCCCCCCCe----EEEEecCchhhhhHHHHhhccCCCceEEeeec
Q 045237 532 CIT--LPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQT----LKIYGDLSSYQSGLSKSLRELLKLESLKLVNK 605 (758)
Q Consensus 532 ~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~----L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 605 (758)
... .....++.+.+|++|....+..........+..+..|.+ +.+.++ .....+..+..+.+|+.|.+..+
T Consensus 651 ~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 651 RSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC---SKRTLISSLGSLGNLEELSILDC 727 (889)
T ss_pred ccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc---ccceeecccccccCcceEEEEcC
Confidence 621 111123334444444443333322112222333333332 222111 23334445555666666666553
Q ss_pred CCC------------cc-cccc------------cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccC
Q 045237 606 SKG------------WQ-LSQM------------ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYS 660 (758)
Q Consensus 606 ~~~------------~~-~~~l------------lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~ 660 (758)
... .. +..+ .+....++++|+.|.+..|....++++....+..++.+.+..+.+.
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 210 00 0001 1211234589999999988877777777777777777666655555
Q ss_pred CceeEEeCCCCCccccEEeeccCCCcCceEECc----ccccccceeeEecc-ccCCCCch
Q 045237 661 GRKLACVGSGGFPKLKILHLKSMFWLEEWTMGA----RAMTKLESLIINPC-AYLKKLPE 715 (758)
Q Consensus 661 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~----~~l~~L~~L~l~~c-~~l~~lp~ 715 (758)
+...... .++|+++..+.+..-. ++.|.... +.+|.+.++.+.+| +.+...|+
T Consensus 808 ~l~~~~~-l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 808 GLRMLCS-LGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred cceeeec-CCCCceeEecccCccc-hhheehhcCcccccCccccccceeccccceeecCC
Confidence 5421221 4555555555554422 33333222 44444445555544 33334443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7e-55 Score=530.66 Aligned_cols=638 Identities=16% Similarity=0.160 Sum_probs=440.2
Q ss_pred eeehhhHHHHHHHHHhccCCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccCCCCccccccc
Q 045237 11 EMNLILFSDRLKRVLAGEDGALTLPDSTNLKPVLQYFLSEIEIITTLLRDYKSDINRLLIQLWNVEEDVDRPDVLSILND 90 (758)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 90 (758)
+..+.+|.+||..... .+|..+.+...+.+.+.+.+++|.++|.. +.+ .+
T Consensus 133 ~~~~~~w~~al~~~~~-----~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~-----------------------~~~--~~ 182 (1153)
T PLN03210 133 EDEKIQWKQALTDVAN-----ILGYHSQNWPNEAKMIEEIANDVLGKLNL-----------------------TPS--ND 182 (1153)
T ss_pred hhHHHHHHHHHHHHhC-----cCceecCCCCCHHHHHHHHHHHHHHhhcc-----------------------ccC--cc
Confidence 3456777777766533 44444444444555555555555444410 000 11
Q ss_pred ccceeecchhhHHHHHHHhcCCCCCCCccccCcceehHHH---------HHHHhCcccccccCCeeEEEE---ECCC---
Q 045237 91 INYFVYESEKAIDTFFTTIMQPQSSESESESTSYKDALVG---------LQKAFNSNHVKFYFDCRAWVR---VSIQ--- 155 (758)
Q Consensus 91 ~~~~v~Gr~~~~~~i~~~L~~~~~~~~~~~~~~~~~~ivG---------a~~vy~~~~~~~~F~~~~wv~---vs~~--- 155 (758)
.+. ++||+++++++.++|.-.. ..+.+++|+| |+++|+ ++..+|++.+|+. |+..
T Consensus 183 ~~~-~vG~~~~l~~l~~lL~l~~-------~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~ 252 (1153)
T PLN03210 183 FED-FVGIEDHIAKMSSLLHLES-------EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEI 252 (1153)
T ss_pred ccc-ccchHHHHHHHHHHHcccc-------CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhh
Confidence 113 4499999999999884321 2345666666 899999 8899999998874 2211
Q ss_pred --------CC-HHHHHHHHHHhhCCCCCCccccCchhhhHHHHHHHhcCCCeEEEEEeCCCChhhHHHHHhhCCCCCCCc
Q 045237 156 --------YN-FKKILDDIIKSVMPASGLSEIIGKDYTLKKSILRDYLTNKKYMTVLDDIYHDMIWNDLREALPDYQNGS 226 (758)
Q Consensus 156 --------~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~~~w~~l~~~~~~~~~gS 226 (758)
++ ...++++++.++...... ... .. ..++++|++||+||||||||+..+|+.+.....++++||
T Consensus 253 ~~~~~~~~~~~~~~l~~~~l~~il~~~~~-----~~~-~~-~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~Gs 325 (1153)
T PLN03210 253 YSSANPDDYNMKLHLQRAFLSEILDKKDI-----KIY-HL-GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGS 325 (1153)
T ss_pred cccccccccchhHHHHHHHHHHHhCCCCc-----ccC-CH-HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCc
Confidence 12 235677777776554321 111 12 457788999999999999999999999999888889999
Q ss_pred EEEEEeCCcccc--------------Cc---ccc------------cchhhhcccc-----------ccccccccccccc
Q 045237 227 RVLITVVDPDIL--------------TS---FEL------------ENGEKIGSDS-----------VLVGGPLFRIKYE 266 (758)
Q Consensus 227 ~iivTTR~~~vL--------------~~---~~l------------~~~~~i~~~i-----------~~~g~~L~~~~~~ 266 (758)
+||||||+++++ ++ |++ +++.+++++| +++|+.|+.++..
T Consensus 326 rIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~ 405 (1153)
T PLN03210 326 RIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKE 405 (1153)
T ss_pred EEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHH
Confidence 999999999872 22 443 3455666666 8999999966889
Q ss_pred cchhhhhhccccchhhhhhcCCCchhHHHhhccCCcchh-HHHHHhHhcccCCCceeeHhHHHHHHHHcCCCCCChHHHH
Q 045237 267 GWQFFLLYCGCKSLESQMMEMENEPTALLFCSIFELPLY-LKFCCFYLCVFYGNLEISTRQLYQLWMAEGFVAHNSEANA 345 (758)
Q Consensus 267 ~W~~~~~~~~l~~l~~~~~~~~~~i~~~L~~Sy~~L~~~-~k~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~ 345 (758)
+|+.+ ++++.+... .+|.++|++||++|+++ .|.||+|||+||.+..++ .+..|.|.+... +
T Consensus 406 ~W~~~-----l~~L~~~~~---~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~ 468 (1153)
T PLN03210 406 DWMDM-----LPRLRNGLD---GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------V 468 (1153)
T ss_pred HHHHH-----HHHHHhCcc---HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------c
Confidence 99999 888776443 68999999999999874 999999999999997554 366777766542 4
Q ss_pred HHHHHHHHhCccccccccCCCCCeeEEEcCHHHHHHHHHHhcccC-------eEEEeCC-----CcccCCCceeEEEeeC
Q 045237 346 EEYLKELISRGLIKVGKRSAGGKIKTCSVPSSVWARLVVLAAKMK-------FVMVLDL-----GLVEELRTIKRFAVPK 413 (758)
Q Consensus 346 ~~~~~~Lv~~sll~~~~~~~~~~~~~~~mHdli~dla~~i~~~e~-------~~~~~~~-----~~~~~~~~~r~Ls~~~ 413 (758)
+..++.|+++||++... ..++|||++|+||+.+++++. +.....+ ........++.+++..
T Consensus 469 ~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~ 541 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDI 541 (1153)
T ss_pred hhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEecc
Confidence 45699999999998754 269999999999999998763 1111000 0011345566666653
Q ss_pred CCCccc--cccccc--cccceEEeccccCCc---chhhhhHHHhccC-CeeEEEEcCCCCCCCCCccccCcccccEEecc
Q 045237 414 NLTKFV--SLEHID--TYLHSLQNFALESDH---SALLDCENICKKF-KLLRVLNMGSLVLDQFPSGIENLFLLRCLKLD 485 (758)
Q Consensus 414 ~~~~~~--~~~~~~--~~Lr~L~~~~~~~~~---~~~~~~~~~~~~l-~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~ 485 (758)
...... ....+. .+|+.|.+....... ....++ ..|..+ +.||.|.+.++.+..+|..+ .+.+|+.|++.
T Consensus 542 ~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~ 619 (1153)
T PLN03210 542 DEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQ 619 (1153)
T ss_pred CccceeeecHHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECc
Confidence 322211 112233 677777776543210 000222 334444 46999999998888898877 46889999999
Q ss_pred CCCCcccCccccCCCCCcEEEccCC-cCcccchhhcccccCcEEEcCC---CCCCCCCCCccccCcccccccccCCCCCC
Q 045237 486 VPSLKSLPSSLCNLLNLQTLDMPSS-YIDHTPEDIWNMHKLMHLNFGC---ITLPAPPENYCSSLKNLIFISALHPCSCT 561 (758)
Q Consensus 486 ~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 561 (758)
++.+..+|..+..+++|+.|+|++| .+..+|. +..+++|+.|++++ ...+|..++++++|+.|++.+|.... .+
T Consensus 620 ~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~L 697 (1153)
T PLN03210 620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-IL 697 (1153)
T ss_pred CccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-cc
Confidence 9999999988889999999999988 6778874 78889999998876 45678888889999999988887766 66
Q ss_pred ccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC-----Ccccccc--------------------cC
Q 045237 562 PDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK-----GWQLSQM--------------------IL 616 (758)
Q Consensus 562 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~-----~~~~~~l--------------------lp 616 (758)
|..+ ++++|+.|.+++| .....+|.. ..+|+.|+++++.- .+.+..+ .|
T Consensus 698 p~~i-~l~sL~~L~Lsgc--~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGC--SRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CCcC-CCCCCCEEeCCCC--CCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccch
Confidence 6655 7889999999988 344444432 34666666665320 0000000 11
Q ss_pred CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcC---------
Q 045237 617 SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLE--------- 687 (758)
Q Consensus 617 ~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--------- 687 (758)
....++++|+.|+|++|.....+|..++++++|+.|+|++|...+..|.. ..+++|+.|+|++|..+.
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~~~nL 848 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDISTNI 848 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCcccccccccccc
Confidence 11122367888888888766677778888888888888877654444432 245666666666665443
Q ss_pred -----------ceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 688 -----------EWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 688 -----------~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.+|..+..+++|+.|++.+|+.++.+|..+..+++|+.+++++|+
T Consensus 849 ~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 849 SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 455556778899999999999999999888899999999999997
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=2e-29 Score=263.84 Aligned_cols=228 Identities=26% Similarity=0.444 Sum_probs=174.8
Q ss_pred chhhHHHHHHHhcCCCCCCCccccCcceehHHH---------HHHHhCcccccccCCeeEEEEECCCCCHHHHHHHHHHh
Q 045237 98 SEKAIDTFFTTIMQPQSSESESESTSYKDALVG---------LQKAFNSNHVKFYFDCRAWVRVSIQYNFKKILDDIIKS 168 (758)
Q Consensus 98 r~~~~~~i~~~L~~~~~~~~~~~~~~~~~~ivG---------a~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 168 (758)
||.++++|.+.|.+... +..+++|+| |+.+|++.+++.+|+.++||.++..++...+++.|+.+
T Consensus 1 re~~~~~l~~~L~~~~~-------~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~ 73 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSN-------EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQ 73 (287)
T ss_dssp -HHHHHHHHHHHHTTTT-------SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCC-------CeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccc
Confidence 78999999999987431 223443333 79999977799999999999999999999999999999
Q ss_pred hCCCCCCccccCchhhhHHHHHHHhcCCCeEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCCccccC---------
Q 045237 169 VMPASGLSEIIGKDYTLKKSILRDYLTNKKYMTVLDDIYHDMIWNDLREALPDYQNGSRVLITVVDPDILT--------- 239 (758)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~~~w~~l~~~~~~~~~gS~iivTTR~~~vL~--------- 239 (758)
++..........+.++.. ..+++.|+++|+||||||||+...|+.+...++.+..||+||||||+..+..
T Consensus 74 l~~~~~~~~~~~~~~~~~-~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~ 152 (287)
T PF00931_consen 74 LGEPDSSISDPKDIEELQ-DQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVI 152 (287)
T ss_dssp HTCC-STSSCCSSHHHHH-HHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEE
T ss_pred cccccccccccccccccc-ccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 988643111234677788 9999999999999999999999999999998888888999999999998722
Q ss_pred ------c---ccc-------------cchhhhcccc-----------cccccccc-ccccccchhhhhhccccchhhhhh
Q 045237 240 ------S---FEL-------------ENGEKIGSDS-----------VLVGGPLF-RIKYEGWQFFLLYCGCKSLESQMM 285 (758)
Q Consensus 240 ------~---~~l-------------~~~~~i~~~i-----------~~~g~~L~-~~~~~~W~~~~~~~~l~~l~~~~~ 285 (758)
. ++| +.+..++.+| +++|+.|+ +.+..+|+.+ ++.+.+...
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~-----~~~l~~~~~ 227 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEA-----LEELENSLR 227 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHH-----HHHHHHCHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccc
Confidence 1 222 1223444444 78899997 6688999999 877776654
Q ss_pred c---CCCchhHHHhhccCCcchhHHHHHhHhcccCCCceeeHhHHHHHHHHcCCCC
Q 045237 286 E---MENEPTALLFCSIFELPLYLKFCCFYLCVFYGNLEISTRQLYQLWMAEGFVA 338 (758)
Q Consensus 286 ~---~~~~i~~~L~~Sy~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~ 338 (758)
+ ....+..++.+||+.||+++|+||+|||+||+++.|+++.|+++|+++|||.
T Consensus 228 ~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 228 ESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp CSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 2 2378999999999999999999999999999999999999999999999985
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=5.1e-25 Score=269.11 Aligned_cols=270 Identities=26% Similarity=0.311 Sum_probs=153.7
Q ss_pred CCeeEEEEcCCCCCC-CCCccccCcccccEEeccCCCCc-ccCccccCCCCCcEEEccCCcC-cccchhhcccccCcEEE
Q 045237 453 FKLLRVLNMGSLVLD-QFPSGIENLFLLRCLKLDVPSLK-SLPSSLCNLLNLQTLDMPSSYI-DHTPEDIWNMHKLMHLN 529 (758)
Q Consensus 453 l~~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l-~~lp~~i~~l~~L~~L~ 529 (758)
+++|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 344444444444443 34444555555555555555543 4455555555555555555533 23455555555555555
Q ss_pred cCCC---CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecC
Q 045237 530 FGCI---TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKS 606 (758)
Q Consensus 530 l~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 606 (758)
++++ ..+|..++.+++|++|++.++...+ ..|..++.+++|+.|++++| ...+.+|..+..+++|+.|++++|.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQN--KLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceecc-ccChhHhCCCCCCEEECcCC--eeeccCchhHhhccCcCEEECcCCe
Confidence 5431 1334445555555555555444433 44555555555555555554 3334445555555555555555411
Q ss_pred CCcccccccC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCC
Q 045237 607 KGWQLSQMIL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFW 685 (758)
Q Consensus 607 ~~~~~~~llp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 685 (758)
+...+| ++..+ ++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+.. ++.+++|+.|++++|..
T Consensus 296 ----l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 296 ----LSGEIPELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN--LGKHNNLTVLDLSTNNL 368 (968)
T ss_pred ----eccCCChhHcCC-CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--HhCCCCCcEEECCCCee
Confidence 011155 55666 67777777777666666666667777777777766666555443 45566777777777654
Q ss_pred cCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 686 LEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 686 l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
...+|..+..+++|+.|++.+|+....+|..+..+++|+.|++.+|+
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 44556666667777777777777666777777888888888888775
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=3.4e-25 Score=270.63 Aligned_cols=318 Identities=19% Similarity=0.207 Sum_probs=207.9
Q ss_pred CCceeEEEeeCCCCccccccccccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCC-CCCccccCcccccE
Q 045237 403 LRTIKRFAVPKNLTKFVSLEHIDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLD-QFPSGIENLFLLRC 481 (758)
Q Consensus 403 ~~~~r~Ls~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~ 481 (758)
..++++|.+..+......+...-++|++|.+.++... ...+..+.++++|++|++++|.+. .+|..++++++|++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 3456666665332221122111166777777776553 234566778888888888888865 77888888888888
Q ss_pred EeccCCCCc-ccCccccCCCCCcEEEccCCcCc-ccchhhcccccCcEEEcCCC---CCCCCCCCccccCcccccccccC
Q 045237 482 LKLDVPSLK-SLPSSLCNLLNLQTLDMPSSYID-HTPEDIWNMHKLMHLNFGCI---TLPAPPENYCSSLKNLIFISALH 556 (758)
Q Consensus 482 L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~---~~~~~~~~~l~~L~~L~l~~~~~ 556 (758)
|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|+++++ ...|..++++++|+.|++..+..
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 888888876 67888888888888888888664 67888888888888888762 24666778888888888777765
Q ss_pred CCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccC-CcCCCCCCccEEEEeeccC
Q 045237 557 PCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQFPPSLTQLSLSNTEL 635 (758)
Q Consensus 557 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~l~~~L~~L~L~~~~l 635 (758)
.+ ..|..+..+++|+.|++++| ...+.+|..+..+++|+.|++++|.- ...+| ++..+ ++|+.|++++|.+
T Consensus 273 ~~-~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~l~~n~~----~~~~~~~~~~l-~~L~~L~L~~n~l 344 (968)
T PLN00113 273 SG-PIPPSIFSLQKLISLDLSDN--SLSGEIPELVIQLQNLEILHLFSNNF----TGKIPVALTSL-PRLQVLQLWSNKF 344 (968)
T ss_pred ec-cCchhHhhccCcCEEECcCC--eeccCCChhHcCCCCCcEEECCCCcc----CCcCChhHhcC-CCCCEEECcCCCC
Confidence 55 66777788888888888877 45566777777788888888876210 11144 55555 6666666666666
Q ss_pred CCCCcccccCCCCCceEEEeccccCCceeEEe----------------------CCCCCccccEEeeccCCCcCceEECc
Q 045237 636 KEDPMPTLEKLPHLLVLKLKQNSYSGRKLACV----------------------GSGGFPKLKILHLKSMFWLEEWTMGA 693 (758)
Q Consensus 636 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~----------------------~~~~~~~L~~L~L~~~~~l~~l~~~~ 693 (758)
.+..|..++.+++|+.|++++|.+.+..+... .+..+++|+.|++++|.....+|..+
T Consensus 345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~ 424 (968)
T PLN00113 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424 (968)
T ss_pred cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence 66666666666666666666665544333220 02344555555555554333445555
Q ss_pred ccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 694 RAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 694 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
..+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 425 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 556666666666666555555555566666666666664
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=1.3e-27 Score=249.87 Aligned_cols=328 Identities=20% Similarity=0.234 Sum_probs=268.1
Q ss_pred CceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccE
Q 045237 404 RTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRC 481 (758)
Q Consensus 404 ~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~ 481 (758)
.++.||++. +.........+. +.||++.+.+++.-+ +-.+.-+-.++.|.+||||.|.+...|..+.+.+++-.
T Consensus 55 qkLEHLs~~-HN~L~~vhGELs~Lp~LRsv~~R~N~LKn---sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMA-HNQLISVHGELSDLPRLRSVIVRDNNLKN---SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhh-hhhhHhhhhhhccchhhHHHhhhcccccc---CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 456777777 433332333333 889999988877654 34455566799999999999999999999999999999
Q ss_pred EeccCCCCcccCccc-cCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCCCC---CCCCCccccCcccccccccCC
Q 045237 482 LKLDVPSLKSLPSSL-CNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCITLP---APPENYCSSLKNLIFISALHP 557 (758)
Q Consensus 482 L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~~~~~l~~L~~L~l~~~~~~ 557 (758)
|+|++|+|..+|..+ -+|.-|-.||||+|.+..+|..+.+|.+|++|.++++-.. ...+..|++|++|.+++...+
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 999999999999876 6899999999999999999999999999999999983221 233556788888888887775
Q ss_pred CCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cC-CcCCCCCCccEEEEeecc
Q 045237 558 CSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--IL-SEYQFPPSLTQLSLSNTE 634 (758)
Q Consensus 558 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp-~~~~l~~~L~~L~L~~~~ 634 (758)
-..+|.++..|.+|..++++.| ....+|..+.++.+|+.|+|++ |++ +. ..... .+|++|+|+.|+
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~-------N~iteL~~~~~~W-~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG-------NKITELNMTEGEW-ENLETLNLSRNQ 279 (1255)
T ss_pred hhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc-------CceeeeeccHHHH-hhhhhhccccch
Confidence 5579999999999999999987 7888999999999999999999 665 33 44556 899999999999
Q ss_pred CCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCc
Q 045237 635 LKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLP 714 (758)
Q Consensus 635 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp 714 (758)
++ .+|..+++++.|+.|.+.+|.++-+..+.. ++.+.+|+.+...+| +++-+|..+..|+.|+.|.+.+|. +-.+|
T Consensus 280 Lt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~Nr-LiTLP 355 (1255)
T KOG0444|consen 280 LT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNR-LITLP 355 (1255)
T ss_pred hc-cchHHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccc-eeech
Confidence 75 789999999999999999998765555443 788899999999886 489999999999999999999887 77799
Q ss_pred hhhcCCCCCcEEEEecCcHHHHHHhhcc--ccCcceeee
Q 045237 715 EELWRIESFRKLELHWPQPELRKKLRAY--EDMERRYDI 751 (758)
Q Consensus 715 ~~l~~l~sL~~L~l~~c~~~~~~~~~~~--~~~~~~~ki 751 (758)
.+|.-|+.|+.|++..+| +++---+.. ....+||+|
T Consensus 356 eaIHlL~~l~vLDlreNp-nLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENP-NLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred hhhhhcCCcceeeccCCc-CccCCCCcchhhhcceeeec
Confidence 999999999999999998 444322221 123566665
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.8e-24 Score=226.58 Aligned_cols=309 Identities=19% Similarity=0.214 Sum_probs=258.4
Q ss_pred CCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCC--CCCccccCccc
Q 045237 403 LRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLD--QFPSGIENLFL 478 (758)
Q Consensus 403 ~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~--~lp~~i~~l~~ 478 (758)
...++.|.+. .......++.+. .+|..|.+.++... ....-++.++.||.+++..|+++ .+|..|..|..
T Consensus 31 Mt~~~WLkLn-rt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 31 MTQMTWLKLN-RTKLEQVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred hhheeEEEec-hhhhhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCCCCchhccccc
Confidence 3445666666 333334555555 88888988887763 34566788999999999999987 78999999999
Q ss_pred ccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCC--CCCCCCCCCccccCccccccccc
Q 045237 479 LRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGC--ITLPAPPENYCSSLKNLIFISAL 555 (758)
Q Consensus 479 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~~~ 555 (758)
|..|+|++|.+++.|..+.+.+++-+|+||+|+|..+|.. +-+|+.|-+|++++ ...+|+.+..+..||+|.++++.
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 9999999999999999999999999999999999999987 56899999999998 55789999999999999988876
Q ss_pred CCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cC-CcCCCCCCccEEEEee
Q 045237 556 HPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--IL-SEYQFPPSLTQLSLSN 632 (758)
Q Consensus 556 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp-~~~~l~~~L~~L~L~~ 632 (758)
... .-...+..|++|+.|.+++.. .....+|.++..+.||..++++. |.| +| .+..+ ++|+.|+|++
T Consensus 185 L~h-fQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~-------N~Lp~vPecly~l-~~LrrLNLS~ 254 (1255)
T KOG0444|consen 185 LNH-FQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSE-------NNLPIVPECLYKL-RNLRRLNLSG 254 (1255)
T ss_pred hhH-HHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccc-------cCCCcchHHHhhh-hhhheeccCc
Confidence 544 445667778888899999875 66778899999999999999999 666 78 88888 9999999999
Q ss_pred ccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCC-CcCceEECcccccccceeeEeccccCC
Q 045237 633 TELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMF-WLEEWTMGARAMTKLESLIINPCAYLK 711 (758)
Q Consensus 633 ~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~-~l~~l~~~~~~l~~L~~L~l~~c~~l~ 711 (758)
|.++ .+....+...+|++|+++.|.++. .|.. ...+++|+.|.+.+|. ..+.+|..+|.+.+|+.+...+|. ++
T Consensus 255 N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP~a--vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LE 329 (1255)
T KOG0444|consen 255 NKIT-ELNMTEGEWENLETLNLSRNQLTV-LPDA--VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LE 329 (1255)
T ss_pred Ccee-eeeccHHHHhhhhhhccccchhcc-chHH--HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cc
Confidence 9975 455566778899999999998764 3333 4678999999998875 245899999999999999998776 99
Q ss_pred CCchhhcCCCCCcEEEEecCc
Q 045237 712 KLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 712 ~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.+|.++..|+.|+.|.++.+.
T Consensus 330 lVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 330 LVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred cCchhhhhhHHHHHhcccccc
Confidence 999999999999999998774
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=9.4e-22 Score=205.33 Aligned_cols=311 Identities=18% Similarity=0.135 Sum_probs=236.6
Q ss_pred CCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccc
Q 045237 403 LRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLL 479 (758)
Q Consensus 403 ~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~L 479 (758)
..++..+.+. .......+.... .++..|.+.++.+. .+....++.++.||+||||.|.++.+| .++..-.++
T Consensus 101 l~nLq~v~l~-~N~Lt~IP~f~~~sghl~~L~L~~N~I~----sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 101 LPNLQEVNLN-KNELTRIPRFGHESGHLEKLDLRHNLIS----SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred CCcceeeeec-cchhhhcccccccccceeEEeeeccccc----cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 4556666666 333333555555 77999999988876 455677888999999999999999776 345555799
Q ss_pred cEEeccCCCCcccC-ccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCCCC-CC--CCCCCccccCcccccccc
Q 045237 480 RCLKLDVPSLKSLP-SSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGCIT-LP--APPENYCSSLKNLIFISA 554 (758)
Q Consensus 480 r~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~-~~--~~~~~~l~~L~~L~l~~~ 554 (758)
++|+|++|.|+.+- ..|..|.+|.+|.|+.|.++.+|.- |.+|++|+.|++..+. .+ ...+..+.+|+.|.+-.+
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence 99999999999664 3578899999999999999999865 6669999999998631 12 223677899999988877
Q ss_pred cCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc---cC-CcCCCCCCccEEEE
Q 045237 555 LHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM---IL-SEYQFPPSLTQLSL 630 (758)
Q Consensus 555 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l---lp-~~~~l~~~L~~L~L 630 (758)
.... ---..+-.|.++++|++..| .....-..++.+++.|+.|+++. |.+ -+ .+... ++|+.|+|
T Consensus 256 ~I~k-L~DG~Fy~l~kme~l~L~~N--~l~~vn~g~lfgLt~L~~L~lS~-------NaI~rih~d~Wsft-qkL~~LdL 324 (873)
T KOG4194|consen 256 DISK-LDDGAFYGLEKMEHLNLETN--RLQAVNEGWLFGLTSLEQLDLSY-------NAIQRIHIDSWSFT-QKLKELDL 324 (873)
T ss_pred Cccc-ccCcceeeecccceeecccc--hhhhhhcccccccchhhhhccch-------hhhheeecchhhhc-ccceeEec
Confidence 6533 22234567899999999988 34444456788899999999998 444 23 33333 89999999
Q ss_pred eeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceE---ECcccccccceeeEecc
Q 045237 631 SNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWT---MGARAMTKLESLIINPC 707 (758)
Q Consensus 631 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~l~~L~~L~l~~c 707 (758)
++|.++.-.+..+..|..|+.|+|+.|++.... ... +.++.+|+.|+|++|..--.+. ..+..+++|++|.+.+|
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~-e~a-f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA-EGA-FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHH-hhH-HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 999998888889999999999999988875432 222 6778899999999876221222 23456899999999988
Q ss_pred ccCCCCch-hhcCCCCCcEEEEecCc
Q 045237 708 AYLKKLPE-ELWRIESFRKLELHWPQ 732 (758)
Q Consensus 708 ~~l~~lp~-~l~~l~sL~~L~l~~c~ 732 (758)
. ++.+|. .+..+++|++|++.+++
T Consensus 403 q-lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 403 Q-LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred e-eeecchhhhccCcccceecCCCCc
Confidence 7 888885 78889999999998876
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=5.8e-22 Score=198.44 Aligned_cols=276 Identities=22% Similarity=0.264 Sum_probs=154.8
Q ss_pred HHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCc
Q 045237 447 ENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLM 526 (758)
Q Consensus 447 ~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~ 526 (758)
+.....+..|+.|+.+.+.+..+|++++.+..|..|+..+|++.++|+.+.++.+|..|++.+|++..+|+..-+++.|+
T Consensus 107 p~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 107 PEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLK 186 (565)
T ss_pred cHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555555555555555555555555555544444444555
Q ss_pred EEEcCC--CCCCCC----------------------CCCccccCcccccccccCCCCCCccccC-CCCCCCeEEEEecCc
Q 045237 527 HLNFGC--ITLPAP----------------------PENYCSSLKNLIFISALHPCSCTPDTLG-RLPNVQTLKIYGDLS 581 (758)
Q Consensus 527 ~L~l~~--~~~~~~----------------------~~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~ 581 (758)
+|+... ...+|+ .|+.|+.|.+|.+..+.. . .+|.+.+ ++++|..|++..+
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i-~-~lpae~~~~L~~l~vLDLRdN-- 262 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI-E-MLPAEHLKHLNSLLVLDLRDN-- 262 (565)
T ss_pred hcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH-H-hhHHHHhcccccceeeecccc--
Confidence 554433 223444 455555555555333322 2 2444444 7788888888887
Q ss_pred hhhhhHHHHhhccCCCceEEeeecCC--------Cccc-------c----------------------------cc----
Q 045237 582 SYQSGLSKSLRELLKLESLKLVNKSK--------GWQL-------S----------------------------QM---- 614 (758)
Q Consensus 582 ~~~~~l~~~l~~~~~L~~L~L~~~~~--------~~~~-------~----------------------------~l---- 614 (758)
...+.|..++.+++|+.|++++++- .+.+ + ++
T Consensus 263 -klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 263 -KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred -ccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 6778888888888899999988542 0000 0 00
Q ss_pred -----------------------------------cC-CcCCC--CCCccEEEEeeccCC--------------------
Q 045237 615 -----------------------------------IL-SEYQF--PPSLTQLSLSNTELK-------------------- 636 (758)
Q Consensus 615 -----------------------------------lp-~~~~l--~~~L~~L~L~~~~l~-------------------- 636 (758)
+| ..... -.-.+..+++.|++.
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc
Confidence 11 00000 001223333333321
Q ss_pred ---CCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceE-----------------------
Q 045237 637 ---EDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWT----------------------- 690 (758)
Q Consensus 637 ---~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~----------------------- 690 (758)
+.+|..++.+++|..|+|++|.+ ...|.. .+++..|+.|+++.++ +..+|
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~L-n~LP~e--~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLL-NDLPEE--MGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred CccccchHHHHhhhcceeeecccchh-hhcchh--hhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccC
Confidence 12334455567777777774433 223322 4556667777777653 33332
Q ss_pred EC-cccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 691 MG-ARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 691 ~~-~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.. +++|.+|..|++.+|. +..+|+.++++++|++|++.|+|
T Consensus 498 ~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 22 5678899999999887 78899999999999999999998
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=1.8e-18 Score=211.95 Aligned_cols=265 Identities=21% Similarity=0.220 Sum_probs=169.9
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCC-CcccCccccCCCCCcE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPS-LKSLPSSLCNLLNLQT 504 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~ 504 (758)
.++|.|.+.+..... ++..| .+.+|+.|+++++.+..+|..+..+++|++|+|+++. +..+| .++.+++|++
T Consensus 589 ~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~ 661 (1153)
T PLN03210 589 PKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLET 661 (1153)
T ss_pred cccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccE
Confidence 567888877765532 22333 4577888888888888888888888888888888754 56776 4777888888
Q ss_pred EEccCC-cCcccchhhcccccCcEEEcCC---CCCCCCCCCccccCcccccccccCCCCCCccccC--------------
Q 045237 505 LDMPSS-YIDHTPEDIWNMHKLMHLNFGC---ITLPAPPENYCSSLKNLIFISALHPCSCTPDTLG-------------- 566 (758)
Q Consensus 505 L~L~~~-~l~~lp~~i~~l~~L~~L~l~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-------------- 566 (758)
|+|++| .+..+|..+.++++|++|++++ ...+|..+ ++++|+.|++.+|.... .+|....
T Consensus 662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~-~~p~~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK-SFPDISTNISWLDLDETAIEE 739 (1153)
T ss_pred EEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc-ccccccCCcCeeecCCCcccc
Confidence 888887 7788888888888888888875 33455544 67777777777765433 2322110
Q ss_pred -----CC-------------------------------CCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcc
Q 045237 567 -----RL-------------------------------PNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQ 610 (758)
Q Consensus 567 -----~l-------------------------------~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 610 (758)
.+ ++|+.|++++| .....+|.++.++++|+.|++++|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n--~~l~~lP~si~~L~~L~~L~Ls~C----- 812 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI--PSLVELPSSIQNLHKLEHLEIENC----- 812 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC--CCccccChhhhCCCCCCEEECCCC-----
Confidence 11 23333333333 233334455555555555555443
Q ss_pred cccc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCc
Q 045237 611 LSQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEE 688 (758)
Q Consensus 611 ~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 688 (758)
+.+ +|....+ ++|+.|++++|.....+|.. .++|+.|+|++|.+.. .|.. ...+++|+.|++++|+++..
T Consensus 813 -~~L~~LP~~~~L-~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~s--i~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 813 -INLETLPTGINL-ESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWW--IEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred -CCcCeeCCCCCc-cccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHH--HhcCCCCCEEECCCCCCcCc
Confidence 122 3411133 55555555555433333221 2456666666555542 2222 56789999999999999999
Q ss_pred eEECcccccccceeeEeccccCCCCc
Q 045237 689 WTMGARAMTKLESLIINPCAYLKKLP 714 (758)
Q Consensus 689 l~~~~~~l~~L~~L~l~~c~~l~~lp 714 (758)
+|.....+++|+.|++.+|+.+..++
T Consensus 885 l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCcccccccCCCeeecCCCccccccc
Confidence 99999999999999999999887543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.6e-20 Score=196.21 Aligned_cols=308 Identities=19% Similarity=0.154 Sum_probs=175.8
Q ss_pred CceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCccccc
Q 045237 404 RTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLR 480 (758)
Q Consensus 404 ~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr 480 (758)
+.+.+|.+..|....+..+.+. +.+|+|.+..+.+. .+....|..-.+++.|+|++|.|+.+- ..|..+.+|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh----cccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 3455666664444444444444 66677766666554 334445555566777777777766543 4566666777
Q ss_pred EEeccCCCCcccCccc-cCCCCCcEEEccCCcCccc-chhhcccccCcEEEcCCC--CCCCC-CCCccccCccccccccc
Q 045237 481 CLKLDVPSLKSLPSSL-CNLLNLQTLDMPSSYIDHT-PEDIWNMHKLMHLNFGCI--TLPAP-PENYCSSLKNLIFISAL 555 (758)
Q Consensus 481 ~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~~~ 555 (758)
.|.|+.|+++.+|... .+|++|+.|+|..|.|+.. .-.|..|++|+.|.+..+ ..+.. .+..|.++++|++..+.
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 7777777777666543 4477777777777766554 334566666666655441 11222 24445666666665555
Q ss_pred CCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cC--CcCCCCCCccEEEEe
Q 045237 556 HPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--IL--SEYQFPPSLTQLSLS 631 (758)
Q Consensus 556 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp--~~~~l~~~L~~L~L~ 631 (758)
... ..-.++-.++.|+.|+++.| .....-+++...+++|+.|+|+. |.+ +| .+..+ ..|+.|+|+
T Consensus 281 l~~-vn~g~lfgLt~L~~L~lS~N--aI~rih~d~WsftqkL~~LdLs~-------N~i~~l~~~sf~~L-~~Le~LnLs 349 (873)
T KOG4194|consen 281 LQA-VNEGWLFGLTSLEQLDLSYN--AIQRIHIDSWSFTQKLKELDLSS-------NRITRLDEGSFRVL-SQLEELNLS 349 (873)
T ss_pred hhh-hhcccccccchhhhhccchh--hhheeecchhhhcccceeEeccc-------cccccCChhHHHHH-HHhhhhccc
Confidence 433 33445566666666777666 34444455556666677777666 333 33 45555 666666776
Q ss_pred eccCCCCCcccccCCCCCceEEEeccccCCceeEEe-CCCCCccccEEeeccCCCcCceEE-CcccccccceeeEecccc
Q 045237 632 NTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACV-GSGGFPKLKILHLKSMFWLEEWTM-GARAMTKLESLIINPCAY 709 (758)
Q Consensus 632 ~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~ 709 (758)
.|.+....-..|..+.+|+.|+|+.|.+...+-... .+.++++|+.|.+.+|. +..+|. .+..+++|++|++.+|+.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcc
Confidence 666544444455566667777766665543221110 14556677777776654 555552 355666777777776664
Q ss_pred CCCCchhhcCCCCCcEEEE
Q 045237 710 LKKLPEELWRIESFRKLEL 728 (758)
Q Consensus 710 l~~lp~~l~~l~sL~~L~l 728 (758)
-.-=|..+..+ .|++|.+
T Consensus 429 aSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 429 ASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred eeecccccccc-hhhhhhh
Confidence 44344555555 5655553
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=3.6e-21 Score=192.85 Aligned_cols=248 Identities=21% Similarity=0.240 Sum_probs=154.0
Q ss_pred HHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcE
Q 045237 448 NICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMH 527 (758)
Q Consensus 448 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 527 (758)
+-+.++..|.||+++++.+.++|.+++.+..+..|+.++|++..+|+.++.+.+|..|+.++|.+.++|++++.+..|..
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence 34455555566666666555555556655555556666555556666665556666666655555555555555555555
Q ss_pred EEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC
Q 045237 528 LNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK 607 (758)
Q Consensus 528 L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 607 (758)
|+..+ +... ..|+.+.++.+|..|.+.++ ...++|+..-.++.|+.|+...
T Consensus 142 l~~~~---------------------N~i~--slp~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~--- 192 (565)
T KOG0472|consen 142 LDATN---------------------NQIS--SLPEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNS--- 192 (565)
T ss_pred hhccc---------------------cccc--cCchHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccch---
Confidence 54433 3222 24555555555555555554 3344444444455565555544
Q ss_pred Ccccccc--cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCC
Q 045237 608 GWQLSQM--IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMF 684 (758)
Q Consensus 608 ~~~~~~l--lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~ 684 (758)
+-+ +| .++.+ .+|..|+|..|.+. .. +.|+.+..|++|++..|.+.- .+... ...+++|..|++.++.
T Consensus 193 ----N~L~tlP~~lg~l-~~L~~LyL~~Nki~-~l-Pef~gcs~L~Elh~g~N~i~~-lpae~-~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 193 ----NLLETLPPELGGL-ESLELLYLRRNKIR-FL-PEFPGCSLLKELHVGENQIEM-LPAEH-LKHLNSLLVLDLRDNK 263 (565)
T ss_pred ----hhhhcCChhhcch-hhhHHHHhhhcccc-cC-CCCCccHHHHHHHhcccHHHh-hHHHH-hcccccceeeeccccc
Confidence 333 55 66666 77777777777653 23 367777777777777665432 22221 4567888888888875
Q ss_pred CcCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCcHHHH
Q 045237 685 WLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQPELR 736 (758)
Q Consensus 685 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~~~~~ 736 (758)
+.++|.++.-+.+|++|++++|. +..+|..++++ .|+.|.+.|+|--.+
T Consensus 264 -lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 264 -LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred -cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHH
Confidence 88888888888888899988877 77788888888 888888888884333
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=1.6e-18 Score=190.95 Aligned_cols=285 Identities=21% Similarity=0.225 Sum_probs=150.3
Q ss_pred eeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEe
Q 045237 406 IKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLK 483 (758)
Q Consensus 406 ~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~ 483 (758)
+.+|.+. +.....++..+. .+|+.|-+..+.+ ...+....++++|++|.|.+|.+..+|.++..+++|.||+
T Consensus 47 L~~l~ls-nn~~~~fp~~it~l~~L~~ln~s~n~i-----~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 47 LKSLDLS-NNQISSFPIQITLLSHLRQLNLSRNYI-----RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eEEeecc-ccccccCCchhhhHHHHhhcccchhhH-----hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 4445555 333333444444 6677777666655 4445667778888888888887778888888888888888
Q ss_pred ccCCCCcccCccccCCC----------------------------------------CCcE-EEccCCcCcccchhhccc
Q 045237 484 LDVPSLKSLPSSLCNLL----------------------------------------NLQT-LDMPSSYIDHTPEDIWNM 522 (758)
Q Consensus 484 L~~~~i~~lp~~i~~L~----------------------------------------~L~~-L~L~~~~l~~lp~~i~~l 522 (758)
++.|.+..+|.-+..+. +|++ |||++|.+..+ ++.++
T Consensus 121 lS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~--dls~~ 198 (1081)
T KOG0618|consen 121 LSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL--DLSNL 198 (1081)
T ss_pred cchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh--hhhhc
Confidence 88777665554332221 2222 44444433210 01111
Q ss_pred --------------------ccCcEEEc----------------------CC--CCCCCCCCCccccCcccccccccCCC
Q 045237 523 --------------------HKLMHLNF----------------------GC--ITLPAPPENYCSSLKNLIFISALHPC 558 (758)
Q Consensus 523 --------------------~~L~~L~l----------------------~~--~~~~~~~~~~l~~L~~L~l~~~~~~~ 558 (758)
++|++|+. +. ...+|..++.+.+|+.+....+.. .
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~ 277 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-V 277 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-H
Confidence 11222211 11 234455566677777776554443 2
Q ss_pred CCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC-Ccc----------c-------ccc--cC-C
Q 045237 559 SCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK-GWQ----------L-------SQM--IL-S 617 (758)
Q Consensus 559 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~-~~~----------~-------~~l--lp-~ 617 (758)
..|..+..+.+|+.|.+..| ....+|..+...++|++|+|..+.- .+. + +++ +| .
T Consensus 278 -~lp~ri~~~~~L~~l~~~~n---el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 278 -ALPLRISRITSLVSLSAAYN---ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred -hhHHHHhhhhhHHHHHhhhh---hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 45666666666666666665 4455555555666666666665220 000 0 111 23 1
Q ss_pred c-CCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccc
Q 045237 618 E-YQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAM 696 (758)
Q Consensus 618 ~-~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l 696 (758)
- ..+ +.|+.|.+.+|.+++...+.+.++++|+.|+|++|.+.. .|... ...++.|+.|+|++|. ++.+|.....+
T Consensus 354 ~e~~~-~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~-~~kle~LeeL~LSGNk-L~~Lp~tva~~ 429 (1081)
T KOG0618|consen 354 EENNH-AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASK-LRKLEELEELNLSGNK-LTTLPDTVANL 429 (1081)
T ss_pred cchhh-HHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHH-HhchHHhHHHhcccch-hhhhhHHHHhh
Confidence 1 122 556666666666666666666666666666666654432 12111 4455566666666653 55555444444
Q ss_pred cccceeeEecc
Q 045237 697 TKLESLIINPC 707 (758)
Q Consensus 697 ~~L~~L~l~~c 707 (758)
+.|++|..++|
T Consensus 430 ~~L~tL~ahsN 440 (1081)
T KOG0618|consen 430 GRLHTLRAHSN 440 (1081)
T ss_pred hhhHHHhhcCC
Confidence 44444443333
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=2.7e-17 Score=181.42 Aligned_cols=140 Identities=24% Similarity=0.261 Sum_probs=88.5
Q ss_pred hhhhHHHHhhccCCCceEEeeecCC---------Cccc-------ccc--cC-CcCCCCCCccEEEEeeccCCCCCcccc
Q 045237 583 YQSGLSKSLRELLKLESLKLVNKSK---------GWQL-------SQM--IL-SEYQFPPSLTQLSLSNTELKEDPMPTL 643 (758)
Q Consensus 583 ~~~~l~~~l~~~~~L~~L~L~~~~~---------~~~~-------~~l--lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l 643 (758)
....+|+++..+.+|+.|....+.- ...+ +.+ +| ....+ ++|++|+|..|.+...+...+
T Consensus 252 ~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~-~sL~tLdL~~N~L~~lp~~~l 330 (1081)
T KOG0618|consen 252 NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGL-KSLRTLDLQSNNLPSLPDNFL 330 (1081)
T ss_pred hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCccccc-ceeeeeeehhccccccchHHH
Confidence 4555677777777777777766220 0000 111 55 55556 788888888877643221111
Q ss_pred -------------------------cCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEEC-ccccc
Q 045237 644 -------------------------EKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMG-ARAMT 697 (758)
Q Consensus 644 -------------------------~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~ 697 (758)
..++.|+.|++.+|.++....+. +.+|++|+.|+|++|. +..+|.. +..++
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~--l~~~~hLKVLhLsyNr-L~~fpas~~~kle 407 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV--LVNFKHLKVLHLSYNR-LNSFPASKLRKLE 407 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh--hccccceeeeeecccc-cccCCHHHHhchH
Confidence 11345666777777776666555 5788999999999986 7778754 56788
Q ss_pred ccceeeEeccccCCCCchhhcCCCCCcEEE
Q 045237 698 KLESLIINPCAYLKKLPEELWRIESFRKLE 727 (758)
Q Consensus 698 ~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~ 727 (758)
.|+.|++++|. |+.+|..+.+++.|+.|.
T Consensus 408 ~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 408 ELEELNLSGNK-LTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred HhHHHhcccch-hhhhhHHHHhhhhhHHHh
Confidence 99999999987 666666554444444333
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=2.1e-15 Score=173.13 Aligned_cols=240 Identities=21% Similarity=0.259 Sum_probs=175.5
Q ss_pred CeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCC
Q 045237 454 KLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCI 533 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 533 (758)
.+...|+++++.++.+|..+. ++|+.|+|++|+++.+|..+. .+|++|++++|.+..+|..+. .+|+.|+++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 456788898888888887664 478899999999988887765 589999999988888887654 47888888773
Q ss_pred --CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCccc
Q 045237 534 --TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQL 611 (758)
Q Consensus 534 --~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~ 611 (758)
..+|..+. ++|+.|++.++.. . .+|..+. ++|+.|++++| ....+|..+. ++|+.|++++
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L-~-~LP~~l~--~sL~~L~Ls~N---~Lt~LP~~lp--~sL~~L~Ls~------- 313 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKI-S-CLPENLP--EELRYLSVYDN---SIRTLPAHLP--SGITHLNVQS------- 313 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCcc-C-ccccccC--CCCcEEECCCC---ccccCcccch--hhHHHHHhcC-------
Confidence 34444443 4788888765543 3 4666553 58999999988 3334554432 4688888887
Q ss_pred ccc--cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCc
Q 045237 612 SQM--IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEE 688 (758)
Q Consensus 612 ~~l--lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 688 (758)
|.+ +| .+ +++|+.|++++|.++. +|..+ .++|+.|++++|.+.. .+.. -.++|+.|+|++|. +..
T Consensus 314 N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~----lp~~L~~LdLs~N~-Lt~ 381 (754)
T PRK15370 314 NSLTALPETL---PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPET----LPPTITTLDVSRNA-LTN 381 (754)
T ss_pred CccccCCccc---cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChh----hcCCcCEEECCCCc-CCC
Confidence 444 44 32 3789999999998764 55544 3799999999988763 3322 23689999999985 778
Q ss_pred eEECcccccccceeeEeccccCCCCchhhc----CCCCCcEEEEecCc
Q 045237 689 WTMGARAMTKLESLIINPCAYLKKLPEELW----RIESFRKLELHWPQ 732 (758)
Q Consensus 689 l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~----~l~sL~~L~l~~c~ 732 (758)
+|..+. ++|+.|++++|. +..+|..+. .++++..|++.++|
T Consensus 382 LP~~l~--~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 382 LPENLP--AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCHhHH--HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 876543 479999999987 567776544 45888999999998
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=6.9e-15 Score=167.80 Aligned_cols=230 Identities=22% Similarity=0.156 Sum_probs=154.8
Q ss_pred eeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCC-
Q 045237 455 LLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCI- 533 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~- 533 (758)
+|+.|++++|.++.+|.. +++|++|++++|.++.+|.. .++|+.|++++|.+..+|... .+|+.|+++++
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCCc
Confidence 567777777777776642 45677777777777777643 356777777777776666532 45666766552
Q ss_pred -CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccc
Q 045237 534 -TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLS 612 (758)
Q Consensus 534 -~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~ 612 (758)
..+|. ..++|+.|++.++.... +|.. ..+|+.|++++| ....+|.. ..+|+.|+|++ |
T Consensus 294 Lt~LP~---~p~~L~~LdLS~N~L~~--Lp~l---p~~L~~L~Ls~N---~L~~LP~l---p~~Lq~LdLS~-------N 352 (788)
T PRK15387 294 LTSLPV---LPPGLQELSVSDNQLAS--LPAL---PSELCKLWAYNN---QLTSLPTL---PSGLQELSVSD-------N 352 (788)
T ss_pred cccccc---cccccceeECCCCcccc--CCCC---cccccccccccC---cccccccc---ccccceEecCC-------C
Confidence 22332 23567777776664432 3321 235667777776 23334421 24788888887 5
Q ss_pred cc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceE
Q 045237 613 QM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWT 690 (758)
Q Consensus 613 ~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 690 (758)
++ +|. +|++|+.|++++|.+. .+|.. .++|+.|++++|.+.+ .+. ..++|+.|++++|. +..+|
T Consensus 353 ~Ls~LP~---lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~-----l~s~L~~LdLS~N~-LssIP 418 (788)
T PRK15387 353 QLASLPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV-----LPSELKELMVSGNR-LTSLP 418 (788)
T ss_pred ccCCCCC---CCcccceehhhccccc-cCccc---ccccceEEecCCcccC-CCC-----cccCCCEEEccCCc-CCCCC
Confidence 55 442 2378888888888875 34432 3578999999888764 221 24689999999986 77777
Q ss_pred ECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 691 MGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 691 ~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.. +.+|+.|++++|. ++.+|..+.++++|+.|++++||
T Consensus 419 ~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 419 ML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 53 4578899999887 67899999999999999999987
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=9.3e-17 Score=143.28 Aligned_cols=161 Identities=19% Similarity=0.247 Sum_probs=98.0
Q ss_pred ccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCC--CCCCCCCCCccccCcccc
Q 045237 473 IENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGC--ITLPAPPENYCSSLKNLI 550 (758)
Q Consensus 473 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~ 550 (758)
+.++.+...|.|++|+++.+|+.|..|.+|+.|++++|.++++|..++.+++|++|+++- ....|.+++.++.|+.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 344556666677777777777777777777777777777777777777777777776553 445666666666666666
Q ss_pred cccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cC-CcCCCCCCccE
Q 045237 551 FISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--IL-SEYQFPPSLTQ 627 (758)
Q Consensus 551 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp-~~~~l~~~L~~ 627 (758)
+.+++.....+|..+..|..|+.|+++.+ ..+.+|..++++++|+.|.+.. +.+ +| .++.+ +.|+.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dn---dfe~lp~dvg~lt~lqil~lrd-------ndll~lpkeig~l-t~lre 177 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDN---DFEILPPDVGKLTNLQILSLRD-------NDLLSLPKEIGDL-TRLRE 177 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCC---CcccCChhhhhhcceeEEeecc-------CchhhCcHHHHHH-HHHHH
Confidence 66665554455655555666666666655 3444555555555555555555 334 44 55555 55555
Q ss_pred EEEeeccCCCCCcccccC
Q 045237 628 LSLSNTELKEDPMPTLEK 645 (758)
Q Consensus 628 L~L~~~~l~~~~~~~l~~ 645 (758)
|++.+|+++ .+|+.+++
T Consensus 178 lhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 178 LHIQGNRLT-VLPPELAN 194 (264)
T ss_pred Hhcccceee-ecChhhhh
Confidence 555555542 34444443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=5.4e-14 Score=160.56 Aligned_cols=248 Identities=16% Similarity=0.048 Sum_probs=179.3
Q ss_pred cccccccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCC
Q 045237 420 SLEHIDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNL 499 (758)
Q Consensus 420 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 499 (758)
++..+..+++.|.+.++.... + + ..+++|+.|++++|.++.+|.. .++|+.|++++|.++.+|...
T Consensus 216 LP~~l~~~L~~L~L~~N~Lt~----L-P---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp--- 281 (788)
T PRK15387 216 LPDCLPAHITTLVIPDNNLTS----L-P---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP--- 281 (788)
T ss_pred CCcchhcCCCEEEccCCcCCC----C-C---CCCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---
Confidence 333344678888888776642 1 1 2357899999999999988864 358899999999999888643
Q ss_pred CCCcEEEccCCcCcccchhhcccccCcEEEcCCC--CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEE
Q 045237 500 LNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCI--TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIY 577 (758)
Q Consensus 500 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 577 (758)
.+|+.|++++|.+..+|.. +++|+.|+++++ ..+|.. ..+|+.|.+.+|... .+|. + ..+|+.|+++
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~--~LP~-l--p~~Lq~LdLS 350 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLT--SLPT-L--PSGLQELSVS 350 (788)
T ss_pred hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCccc--cccc-c--ccccceEecC
Confidence 6788999999999999863 578999999873 233332 235677776665543 2442 1 2479999999
Q ss_pred ecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEe
Q 045237 578 GDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLK 655 (758)
Q Consensus 578 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 655 (758)
+| ....+|.. ..+|+.|++++ +.+ +|. ++++|+.|++++|.+.. +|.. .++|+.|+++
T Consensus 351 ~N---~Ls~LP~l---p~~L~~L~Ls~-------N~L~~LP~---l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS 410 (788)
T PRK15387 351 DN---QLASLPTL---PSELYKLWAYN-------NRLTSLPA---LPSGLKELIVSGNRLTS-LPVL---PSELKELMVS 410 (788)
T ss_pred CC---ccCCCCCC---Ccccceehhhc-------cccccCcc---cccccceEEecCCcccC-CCCc---ccCCCEEEcc
Confidence 98 33345532 35777888877 444 442 23789999999999864 4432 4689999999
Q ss_pred ccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcC
Q 045237 656 QNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWR 719 (758)
Q Consensus 656 ~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~ 719 (758)
+|.+.. +|. .+.+|+.|++++|. ++.+|..+..+++|+.|++++|+.-...|..+.+
T Consensus 411 ~N~Lss-IP~-----l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 411 GNRLTS-LPM-----LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCcCCC-CCc-----chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 998765 332 24578999999876 7899998999999999999999976666665533
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=3.8e-14 Score=162.90 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=36.8
Q ss_pred eeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCC
Q 045237 455 LLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGC 532 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 532 (758)
+|+.|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+.|++++|.+..+|..+. ++|++|++++
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC
Confidence 45555555555555554332 245555555555555554443 355555555555555554332 3455555544
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=2e-15 Score=134.87 Aligned_cols=148 Identities=21% Similarity=0.295 Sum_probs=105.8
Q ss_pred cCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcC
Q 045237 452 KFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFG 531 (758)
Q Consensus 452 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 531 (758)
++.+...|.||+|.++.+|..|..+.+|+.|++.+|.|+++|.++..++.|+.|++..|.+..+|.+|+.++-|..|++.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 44555666777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred C----CCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeee
Q 045237 532 C----ITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVN 604 (758)
Q Consensus 532 ~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 604 (758)
. ...+|..+..++.|+.|++.++... .+|.+++++++|+.|.+..+ ..-.+|..++.++.|++|.+.+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhccc
Confidence 5 2245555666666777766665543 36777788888887777776 5566777777888888888777
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=3.2e-14 Score=151.42 Aligned_cols=264 Identities=20% Similarity=0.146 Sum_probs=143.2
Q ss_pred HHHhccCCeeEEEEcCCCCCC-----CCCccccCcccccEEeccCCCCcc-------cCccccCCCCCcEEEccCCcCc-
Q 045237 447 ENICKKFKLLRVLNMGSLVLD-----QFPSGIENLFLLRCLKLDVPSLKS-------LPSSLCNLLNLQTLDMPSSYID- 513 (758)
Q Consensus 447 ~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~l~- 513 (758)
...|..+..|+.|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 455666777888888888774 355556666778888887765542 3345566778888888877664
Q ss_pred ccchhhccccc---CcEEEcCCCCCCCCCCCccccCcccccccccCCC---CCCccccCCC-CCCCeEEEEecCc--hhh
Q 045237 514 HTPEDIWNMHK---LMHLNFGCITLPAPPENYCSSLKNLIFISALHPC---SCTPDTLGRL-PNVQTLKIYGDLS--SYQ 584 (758)
Q Consensus 514 ~lp~~i~~l~~---L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~l~~l-~~L~~L~l~~~~~--~~~ 584 (758)
..+..+..+.+ |++|+++++ .... ..+...+..+ ++|+.|++++|.- ...
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~---------------------~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNN---------------------GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCC---------------------ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 33444444444 666666542 1110 0122334445 6777777777631 112
Q ss_pred hhHHHHhhccCCCceEEeeecCCCcccccccC-CcCCCCCCccEEEEeeccCCCC----CcccccCCCCCceEEEecccc
Q 045237 585 SGLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQFPPSLTQLSLSNTELKED----PMPTLEKLPHLLVLKLKQNSY 659 (758)
Q Consensus 585 ~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~l~~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~~ 659 (758)
..++..+..+++|+.|+++++.-...--..++ .+..+ ++|+.|++++|.+.+. ....+..+++|++|++++|.+
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 33445555666777777766210000000012 23344 5777777777765432 223445667777777777765
Q ss_pred CCceeEEe---CCCCCccccEEeeccCCCc----CceEECcccccccceeeEeccccCCC----CchhhcCC-CCCcEEE
Q 045237 660 SGRKLACV---GSGGFPKLKILHLKSMFWL----EEWTMGARAMTKLESLIINPCAYLKK----LPEELWRI-ESFRKLE 727 (758)
Q Consensus 660 ~~~~~~~~---~~~~~~~L~~L~L~~~~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~----lp~~l~~l-~sL~~L~ 727 (758)
.+..+... -....+.|+.|++++|... ..+......+++|+.|++++|..-.. +...+... +.|++|+
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 54211110 0112367777777776421 12222334456777777777764422 33333333 5677777
Q ss_pred EecCc
Q 045237 728 LHWPQ 732 (758)
Q Consensus 728 l~~c~ 732 (758)
+.++|
T Consensus 314 ~~~~~ 318 (319)
T cd00116 314 VKDDS 318 (319)
T ss_pred cCCCC
Confidence 66654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=4.5e-14 Score=142.28 Aligned_cols=269 Identities=17% Similarity=0.132 Sum_probs=181.9
Q ss_pred cccccccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCC-CccccCcccccEEeccC-CCCcccCcc-c
Q 045237 420 SLEHIDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQF-PSGIENLFLLRCLKLDV-PSLKSLPSS-L 496 (758)
Q Consensus 420 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~-~~i~~lp~~-i 496 (758)
++..+.+....+.+..+.+. .+++..|+.+++||.|||+.|.|+.+ |+.|..+..|-.|-+-+ |+|+.+|.. +
T Consensus 61 VP~~LP~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcccCCCcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 45555567777888888876 78899999999999999999999955 88899999888877777 889999976 6
Q ss_pred cCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCCC--CCCCC-CCCccccCcccccccccCCCCCCccccCCCCCCC
Q 045237 497 CNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGCI--TLPAP-PENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQ 572 (758)
Q Consensus 497 ~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 572 (758)
++|..||-|.+.-|.+..++.. +..|++|..|.++++ ..++. .+..+.+++++.+-.+... ..++++.+.
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i------cdCnL~wla 210 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI------CDCNLPWLA 210 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc------cccccchhh
Confidence 8999999999999988888654 888999999988762 23333 4666777777765443311 122222221
Q ss_pred e-----------------EEEEecCchhhhhHH-HHhhccCCCceE--EeeecCCCcccccccC--CcCCCCCCccEEEE
Q 045237 573 T-----------------LKIYGDLSSYQSGLS-KSLRELLKLESL--KLVNKSKGWQLSQMIL--SEYQFPPSLTQLSL 630 (758)
Q Consensus 573 ~-----------------L~l~~~~~~~~~~l~-~~l~~~~~L~~L--~L~~~~~~~~~~~llp--~~~~l~~~L~~L~L 630 (758)
. ..+... ....+. ..+. ..++.+ .+...++ +-...| .+..+ ++|++|+|
T Consensus 211 ~~~a~~~ietsgarc~~p~rl~~~---Ri~q~~a~kf~--c~~esl~s~~~~~d~---~d~~cP~~cf~~L-~~L~~lnl 281 (498)
T KOG4237|consen 211 DDLAMNPIETSGARCVSPYRLYYK---RINQEDARKFL--CSLESLPSRLSSEDF---PDSICPAKCFKKL-PNLRKLNL 281 (498)
T ss_pred hHHhhchhhcccceecchHHHHHH---Hhcccchhhhh--hhHHhHHHhhccccC---cCCcChHHHHhhc-ccceEecc
Confidence 1 111110 000000 0000 001111 1111000 011145 56677 99999999
Q ss_pred eeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEecccc
Q 045237 631 SNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAY 709 (758)
Q Consensus 631 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 709 (758)
++|.++..-..+|..+..|+.|.|..|++....-.. +.++..|+.|+|.+|....--|..+..+.+|.+|++-.||.
T Consensus 282 snN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~--f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 282 SNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGM--FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHh--hhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 999988888888999999999999888764332222 67788899999999874334466778888899998887774
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=1.6e-13 Score=145.97 Aligned_cols=263 Identities=19% Similarity=0.127 Sum_probs=156.2
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCC-------CCccccCcccccEEeccCCCCc-ccCcccc
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQ-------FPSGIENLFLLRCLKLDVPSLK-SLPSSLC 497 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-------lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~ 497 (758)
..++.|.+.++.............+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+. ..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 5688999888876543224456677888899999999987653 3456777889999999999887 4555555
Q ss_pred CCCC---CcEEEccCCcCcc-----cchhhccc-ccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCC
Q 045237 498 NLLN---LQTLDMPSSYIDH-----TPEDIWNM-HKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRL 568 (758)
Q Consensus 498 ~L~~---L~~L~L~~~~l~~-----lp~~i~~l-~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 568 (758)
.+.+ |++|++++|.+.. +...+..+ ++|+.|+++++....... . ..+..+..+
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-----------------~-~~~~~~~~~ 164 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC-----------------E-ALAKALRAN 164 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-----------------H-HHHHHHHhC
Confidence 5554 9999999997763 33445556 777777776531110000 0 123334455
Q ss_pred CCCCeEEEEecCc--hhhhhHHHHhhccCCCceEEeeecCC-CcccccccC-CcCCCCCCccEEEEeeccCCCCCccccc
Q 045237 569 PNVQTLKIYGDLS--SYQSGLSKSLRELLKLESLKLVNKSK-GWQLSQMIL-SEYQFPPSLTQLSLSNTELKEDPMPTLE 644 (758)
Q Consensus 569 ~~L~~L~l~~~~~--~~~~~l~~~l~~~~~L~~L~L~~~~~-~~~~~~llp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~ 644 (758)
++|++|++++|.- .....++..+..+++|+.|++++|.- +..... ++ .+..+ ++|+.|++++|.+.+..+..+.
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~-l~~~~~~~-~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA-LAETLASL-KSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHH-HHHHhccc-CCCCEEecCCCcCchHHHHHHH
Confidence 6677777766631 11123444455556777777766210 000000 22 34455 7788888888776542222221
Q ss_pred -----CCCCCceEEEeccccCCceeE--EeCCCCCccccEEeeccCCCcCc----eEECcccc-cccceeeEeccc
Q 045237 645 -----KLPHLLVLKLKQNSYSGRKLA--CVGSGGFPKLKILHLKSMFWLEE----WTMGARAM-TKLESLIINPCA 708 (758)
Q Consensus 645 -----~l~~L~~L~L~~n~~~~~~~~--~~~~~~~~~L~~L~L~~~~~l~~----l~~~~~~l-~~L~~L~l~~c~ 708 (758)
..+.|+.|++++|.++..... ......+++|+.|++++|..-.. +....... +.|+.|++.+++
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 236788888887776521110 00033457788888887753221 22223344 677788777765
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=2.3e-12 Score=150.58 Aligned_cols=201 Identities=23% Similarity=0.215 Sum_probs=137.9
Q ss_pred ccccc-cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCC--CCCCCc-cccCcccccEEeccCC-CCcccCcc
Q 045237 421 LEHID-TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLV--LDQFPS-GIENLFLLRCLKLDVP-SLKSLPSS 495 (758)
Q Consensus 421 ~~~~~-~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--l~~lp~-~i~~l~~Lr~L~L~~~-~i~~lp~~ 495 (758)
+.... ...|...+.++..... .. -...+.|++|-+.++. +..++. .|..+++||+|||++| .+.++|..
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~~~-----~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIEHI-----AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred ccccchhheeEEEEeccchhhc-----cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 33344 6778888877766421 11 1234479999998886 555554 4778999999999976 47799999
Q ss_pred ccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCC---CCCCCCCCccccCccccccccc-CCCCCCccccCCCCCC
Q 045237 496 LCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCI---TLPAPPENYCSSLKNLIFISAL-HPCSCTPDTLGRLPNV 571 (758)
Q Consensus 496 i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~---~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L 571 (758)
|++|.+|++|+++++.+..+|.++.+|++|.+|++... ...|.....|++|++|.+.... ..+.....++..+.+|
T Consensus 591 I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred HhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 99999999999999999999999999999999998762 2334444559999999987765 2232566777888888
Q ss_pred CeEEEEecCchhhhhHHHHhhccCCCc----eEEeeecCCCcccccccCCcCCCCCCccEEEEeeccCC
Q 045237 572 QTLKIYGDLSSYQSGLSKSLRELLKLE----SLKLVNKSKGWQLSQMILSEYQFPPSLTQLSLSNTELK 636 (758)
Q Consensus 572 ~~L~l~~~~~~~~~~l~~~l~~~~~L~----~L~L~~~~~~~~~~~llp~~~~l~~~L~~L~L~~~~l~ 636 (758)
+.+.+.... . .+...+..+..|. .+.+.++. ...+.+.+..+ .+|+.|.+.+|...
T Consensus 671 ~~ls~~~~s---~-~~~e~l~~~~~L~~~~~~l~~~~~~----~~~~~~~~~~l-~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 671 ENLSITISS---V-LLLEDLLGMTRLRSLLQSLSIEGCS----KRTLISSLGSL-GNLEELSILDCGIS 730 (889)
T ss_pred hhheeecch---h-HhHhhhhhhHHHHHHhHhhhhcccc----cceeecccccc-cCcceEEEEcCCCc
Confidence 888887652 1 2222223333333 22222110 01112255666 89999999998864
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=5.3e-13 Score=134.65 Aligned_cols=266 Identities=18% Similarity=0.130 Sum_probs=162.6
Q ss_pred eEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcc-cCccccCCCCCcEEEccC-CcCcccchh-hcccccCcEEEcC
Q 045237 456 LRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKS-LPSSLCNLLNLQTLDMPS-SYIDHTPED-IWNMHKLMHLNFG 531 (758)
Q Consensus 456 Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~-~~l~~lp~~-i~~l~~L~~L~l~ 531 (758)
-..++|..|.|+.+| ..|+.+++||.|+|++|.|+. -|..+..|.+|-+|-+.+ |+|+.+|.+ |.+|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 456788888888887 567888888888888888884 477788888888877776 588888876 6677777777654
Q ss_pred C---CCCCCCCCCccccCcccccccccCCCCCCcc-ccCCCCCCCeEEEEecCc----------hhhhhHHHHhhccCCC
Q 045237 532 C---ITLPAPPENYCSSLKNLIFISALHPCSCTPD-TLGRLPNVQTLKIYGDLS----------SYQSGLSKSLRELLKL 597 (758)
Q Consensus 532 ~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~----------~~~~~l~~~l~~~~~L 597 (758)
- .......+..+++|..|.++++.... ++. .+..+..++.+.+..+.- ......|-.++.....
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~--i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQS--ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhh--hccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 3 11122234455556555555554422 222 344555555554443310 0000001111111111
Q ss_pred ceEEeeecCCCcccccccC---CcCCCCCCccEEEEeeccCCCC-CcccccCCCCCceEEEeccccCCceeEEeCCCCCc
Q 045237 598 ESLKLVNKSKGWQLSQMIL---SEYQFPPSLTQLSLSNTELKED-PMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFP 673 (758)
Q Consensus 598 ~~L~L~~~~~~~~~~~llp---~~~~l~~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~ 673 (758)
....+... ..+. ++ ....+ .++..=-.+.|..... +...|..+|+|+.|+|++|.+++..... +.+..
T Consensus 227 ~p~rl~~~----Ri~q-~~a~kf~c~~-esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a--Fe~~a 298 (498)
T KOG4237|consen 227 SPYRLYYK----RINQ-EDARKFLCSL-ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA--FEGAA 298 (498)
T ss_pred chHHHHHH----Hhcc-cchhhhhhhH-HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh--hcchh
Confidence 00000000 0000 11 01111 1222222233332222 2346889999999999999988766554 78889
Q ss_pred cccEEeeccCCCcCceE-ECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 674 KLKILHLKSMFWLEEWT-MGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 674 ~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.++.|.|..|+ ++.+. ..+..+..|+.|++.+|.....-|-.+..+.+|.+|.+-.+|
T Consensus 299 ~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 299 ELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 99999999875 66553 356788999999999999766677789999999999998876
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=1.8e-10 Score=121.68 Aligned_cols=153 Identities=26% Similarity=0.313 Sum_probs=111.3
Q ss_pred hhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhccccc
Q 045237 445 DCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHK 524 (758)
Q Consensus 445 ~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~ 524 (758)
.++..+..|-.|..|.|+.|.+..+|..++++..|.||+|+.|.+..+|..++.|+ |+.|-+++|+++.+|+.++.+..
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPT 167 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchh
Confidence 34455666677777778877777788888888888888888888888887777654 77788888888888888887777
Q ss_pred CcEEEcCC--CCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEe
Q 045237 525 LMHLNFGC--ITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKL 602 (758)
Q Consensus 525 L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L 602 (758)
|.+|+.++ ...+|..++.+.+|+.|++..+.... +|++++.| .|.+|++++| ....+|..+.+|++|+.|.|
T Consensus 168 l~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~El~~L-pLi~lDfScN---kis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 168 LAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPEELCSL-PLIRLDFSCN---KISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred HHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCHHHhCC-ceeeeecccC---ceeecchhhhhhhhheeeee
Confidence 88877765 34566777777777777766655443 67777633 4667777776 56667777777777777777
Q ss_pred ee
Q 045237 603 VN 604 (758)
Q Consensus 603 ~~ 604 (758)
.+
T Consensus 242 en 243 (722)
T KOG0532|consen 242 EN 243 (722)
T ss_pred cc
Confidence 76
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=5.1e-09 Score=114.83 Aligned_cols=177 Identities=25% Similarity=0.286 Sum_probs=117.6
Q ss_pred HHhccCCeeEEEEcCCCCCCCCCccccCcc-cccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCc
Q 045237 448 NICKKFKLLRVLNMGSLVLDQFPSGIENLF-LLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLM 526 (758)
Q Consensus 448 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~ 526 (758)
.....++.+..|++.++.++++|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|.....+++|+
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 334455788888888888888888888885 8899999888888888888888999999998888888888777888888
Q ss_pred EEEcCCC--CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeee
Q 045237 527 HLNFGCI--TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVN 604 (758)
Q Consensus 527 ~L~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 604 (758)
.|+++++ ..+|..++.+..|++|.+..+... ..+..+..+.++..|.+.++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n------------------------- 242 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNN------------------------- 242 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcce--ecchhhhhcccccccccCCc-------------------------
Confidence 8887762 233433334444555554443211 23333344444444433332
Q ss_pred cCCCcccccc--cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCc
Q 045237 605 KSKGWQLSQM--IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGR 662 (758)
Q Consensus 605 ~~~~~~~~~l--lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 662 (758)
++ +| .++.+ ++|+.|++++|.+.. ++. ++.+.+|+.|++++|.+...
T Consensus 243 --------~~~~~~~~~~~l-~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 243 --------KLEDLPESIGNL-SNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred --------eeeeccchhccc-cccceeccccccccc-ccc-ccccCccCEEeccCcccccc
Confidence 22 23 44455 677888888877643 222 77778888888887766544
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=1.7e-09 Score=105.57 Aligned_cols=206 Identities=19% Similarity=0.133 Sum_probs=126.7
Q ss_pred cCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCC-CCCCCCCCccccCcccccccccCCCCCCccccCCCCC
Q 045237 492 LPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCI-TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPN 570 (758)
Q Consensus 492 lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 570 (758)
+|-.+.-+.+|.++.++.|.-+.+-.-...-+.|+++.+.+. ..+.+.+--.+.+.......-....+.....+.....
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~ 285 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQE 285 (490)
T ss_pred cccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhh
Confidence 344444455566666665543333222222334555544331 1111111112222222222222222244556667788
Q ss_pred CCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccC--CcCCCCCCccEEEEeeccCCCCCcccccCCCC
Q 045237 571 VQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL--SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPH 648 (758)
Q Consensus 571 L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp--~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~ 648 (758)
|++|++++| ....+..+..-.+.++.|+++. |++.- .+..+ ++|+.|+|++|.++ .+..+-.++-|
T Consensus 286 LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~-------N~i~~v~nLa~L-~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 286 LTELDLSGN---LITQIDESVKLAPKLRRLILSQ-------NRIRTVQNLAEL-PQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred hhhcccccc---chhhhhhhhhhccceeEEeccc-------cceeeehhhhhc-ccceEeecccchhH-hhhhhHhhhcC
Confidence 999999988 5666777777788999999988 55522 55666 89999999999864 44456667888
Q ss_pred CceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCce--EECcccccccceeeEeccccCCCCch
Q 045237 649 LLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEW--TMGARAMTKLESLIINPCAYLKKLPE 715 (758)
Q Consensus 649 L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~lp~ 715 (758)
.+.|.|++|.+..- .|.+.+-+|..|++++|. ++.+ ...+|++|+|+.|.+.+|| +..+|.
T Consensus 354 IKtL~La~N~iE~L----SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL----SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred EeeeehhhhhHhhh----hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 99999998876431 124566788999999875 5544 2468899999999999999 444443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=3.1e-10 Score=119.97 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=95.8
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTL 505 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 505 (758)
-.|.++.++.+.. ...+..+.++..|.+|+|+.|.+..+|..++.| -|+.|-+++|+++.+|+.++.+..|..|
T Consensus 98 ~~Le~liLy~n~~-----r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 98 VSLESLILYHNCI-----RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHhccc-----eecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHh
Confidence 4455555555554 334556666666677777777666666666665 3666666677777777777666667777
Q ss_pred EccCCcCcccchhhcccccCcEEEcCC--CCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchh
Q 045237 506 DMPSSYIDHTPEDIWNMHKLMHLNFGC--ITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSY 583 (758)
Q Consensus 506 ~L~~~~l~~lp~~i~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 583 (758)
|.+.|.+..+|..++.+.+|+.|.+.. ...+|..+..| .|..|+ +.|++.. .+|..+.+|+.|+.|.+.+| -
T Consensus 172 d~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lD-fScNkis-~iPv~fr~m~~Lq~l~LenN---P 245 (722)
T KOG0532|consen 172 DVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLD-FSCNKIS-YLPVDFRKMRHLQVLQLENN---P 245 (722)
T ss_pred hhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeee-cccCcee-ecchhhhhhhhheeeeeccC---C
Confidence 777776666766666666666665543 34555555532 355566 3444444 56666677777777776666 3
Q ss_pred hhhHHHHhhcc
Q 045237 584 QSGLSKSLREL 594 (758)
Q Consensus 584 ~~~l~~~l~~~ 594 (758)
...-|+.++.+
T Consensus 246 LqSPPAqIC~k 256 (722)
T KOG0532|consen 246 LQSPPAQICEK 256 (722)
T ss_pred CCCChHHHHhc
Confidence 44444444433
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.6e-09 Score=111.32 Aligned_cols=85 Identities=26% Similarity=0.362 Sum_probs=42.4
Q ss_pred CCccEEEEeeccCCC-CCcccccCCCCCceEEEeccccCCcee-EEe---CCCCCccccEEeeccCCCcCceEE--Cccc
Q 045237 623 PSLTQLSLSNTELKE-DPMPTLEKLPHLLVLKLKQNSYSGRKL-ACV---GSGGFPKLKILHLKSMFWLEEWTM--GARA 695 (758)
Q Consensus 623 ~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~---~~~~~~~L~~L~L~~~~~l~~l~~--~~~~ 695 (758)
..|+.|+|++|.+.. ......+.+|.|..|+++.|.+..... +.. ....|++|+.|++..|+ +..|+. .+..
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRT 324 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhc
Confidence 555566666555422 112344556666666666554432211 110 02346677777776664 444442 2334
Q ss_pred ccccceeeEeccc
Q 045237 696 MTKLESLIINPCA 708 (758)
Q Consensus 696 l~~L~~L~l~~c~ 708 (758)
+++|+.|.+..++
T Consensus 325 l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 325 LENLKHLRITLNY 337 (505)
T ss_pred cchhhhhhccccc
Confidence 5666666665554
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=2e-08 Score=94.60 Aligned_cols=130 Identities=22% Similarity=0.217 Sum_probs=45.6
Q ss_pred ccCCeeEEEEcCCCCCCCCCcccc-CcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhc-ccccCcEE
Q 045237 451 KKFKLLRVLNMGSLVLDQFPSGIE-NLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIW-NMHKLMHL 528 (758)
Q Consensus 451 ~~l~~Lr~L~L~~~~l~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L 528 (758)
.+...++.|+|+++.++.+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.+..+++.+. .+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34556889999999888764 355 5788999999999999885 67889999999999999988876664 68899999
Q ss_pred EcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCc-hhhhhHHHHhhccCCCceEEee
Q 045237 529 NFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLS-SYQSGLSKSLRELLKLESLKLV 603 (758)
Q Consensus 529 ~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~l~~~l~~~~~L~~L~L~ 603 (758)
+++++ . +..+. ....+..+++|+.|++.+|.- ....--...+..+++|+.|+-.
T Consensus 94 ~L~~N-~----I~~l~----------------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNN-K----ISDLN----------------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS--------SCC----------------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCC-c----CCChH----------------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 88764 1 11111 123345567778888877741 1111122344556666666543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=2.1e-08 Score=109.94 Aligned_cols=168 Identities=26% Similarity=0.314 Sum_probs=134.6
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCC-eeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFK-LLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQT 504 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~ 504 (758)
..+..|.+..+.... .+.....++ +|+.|+++++.+..+|..++.+++|+.|+++.|.+..+|...+.+.+|+.
T Consensus 116 ~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCccccc-----CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 568888888887753 344455564 99999999999999998899999999999999999999988889999999
Q ss_pred EEccCCcCcccchhhcccccCcEEEcCCC--CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCch
Q 045237 505 LDMPSSYIDHTPEDIWNMHKLMHLNFGCI--TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSS 582 (758)
Q Consensus 505 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 582 (758)
|++++|.+..+|..+..+..|..|.++++ ...+..+.+++++..+.+..+.. . ..+..++.+++++.|+++++
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~-~~~~~~~~l~~l~~L~~s~n--- 265 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-E-DLPESIGNLSNLETLDLSNN--- 265 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-e-eccchhccccccceeccccc---
Confidence 99999999999998888888999998875 46677788888888887333332 2 34677888888999999988
Q ss_pred hhhhHHHHhhccCCCceEEeee
Q 045237 583 YQSGLSKSLRELLKLESLKLVN 604 (758)
Q Consensus 583 ~~~~l~~~l~~~~~L~~L~L~~ 604 (758)
....++. +....+|+.|++++
T Consensus 266 ~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 266 QISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ccccccc-ccccCccCEEeccC
Confidence 3333333 66666777777666
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=2.1e-09 Score=107.78 Aligned_cols=245 Identities=17% Similarity=0.185 Sum_probs=153.0
Q ss_pred hHHHhccCCeeEEEEcCCCCCC-----CCCccccCcccccEEeccC--CC-C-cccCcc-------ccCCCCCcEEEccC
Q 045237 446 CENICKKFKLLRVLNMGSLVLD-----QFPSGIENLFLLRCLKLDV--PS-L-KSLPSS-------LCNLLNLQTLDMPS 509 (758)
Q Consensus 446 ~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~--~~-i-~~lp~~-------i~~L~~L~~L~L~~ 509 (758)
.......+..+..|+|++|.+. .+-..+.+.++||.-+++. ++ . .++|+. +-.+++|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3455667778888888888876 3445566677888888876 22 2 255554 34567899999998
Q ss_pred CcCcc-----cchhhcccccCcEEEcCCCCCCCCCCCcc-ccCcccccccccCCCCCCccccCCCCCCCeEEEEecC--c
Q 045237 510 SYIDH-----TPEDIWNMHKLMHLNFGCITLPAPPENYC-SSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDL--S 581 (758)
Q Consensus 510 ~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~ 581 (758)
|-+.. +-+-+..+..|++|++.++-.-|.+=+.+ ..|..|. ...-.++-++|+.+...+|. +
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA----------VNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH----------HHhccCCCcceEEEEeecccccc
Confidence 85532 12335556677777776632222111111 1233322 11223455788888888875 3
Q ss_pred hhhhhHHHHhhccCCCceEEeeecCCCcccccccC--------CcCCCCCCccEEEEeeccCCCC----CcccccCCCCC
Q 045237 582 SYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL--------SEYQFPPSLTQLSLSNTELKED----PMPTLEKLPHL 649 (758)
Q Consensus 582 ~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp--------~~~~l~~~L~~L~L~~~~l~~~----~~~~l~~l~~L 649 (758)
.....+...+...+.|+.+.+.. +.+-| .+..+ ++|+.|+|.+|.++.. +-..+..+|+|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~q-------N~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQ-------NGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred ccHHHHHHHHHhccccceEEEec-------ccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 44555667788888999999888 44422 33455 8999999999887543 23355667889
Q ss_pred ceEEEeccccCCceeE----EeCCCCCccccEEeeccCCCcC----ceEECcccccccceeeEecccc
Q 045237 650 LVLKLKQNSYSGRKLA----CVGSGGFPKLKILHLKSMFWLE----EWTMGARAMTKLESLIINPCAY 709 (758)
Q Consensus 650 ~~L~L~~n~~~~~~~~----~~~~~~~~~L~~L~L~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~ 709 (758)
+.|++++|.+...... .. ...+|+|+.|.+.+|..-. .+.......|.|+.|+|++|..
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al-~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDAL-KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHH-hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9999988876543211 11 2347889999988875222 1222344588899999999884
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.62 E-value=1.2e-09 Score=111.63 Aligned_cols=286 Identities=17% Similarity=0.119 Sum_probs=150.2
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCC-CC--CCCccccCcccccEEeccCC-CCc--ccCccccCC
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLV-LD--QFPSGIENLFLLRCLKLDVP-SLK--SLPSSLCNL 499 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~--~lp~~i~~l~~Lr~L~L~~~-~i~--~lp~~i~~L 499 (758)
..++.|.+.+...... ..+..+-.++++++.|.+.+|. ++ .+-..-..+++|++|++..| .++ .+-.....+
T Consensus 138 g~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 3456666665544332 3445566778888888888776 33 22222345778888888774 455 232234567
Q ss_pred CCCcEEEccCC-cCcc--cchhhcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCc-cccCCCCCCCeEE
Q 045237 500 LNLQTLDMPSS-YIDH--TPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTP-DTLGRLPNVQTLK 575 (758)
Q Consensus 500 ~~L~~L~L~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~ 575 (758)
++|.+|+++.| .+.. +-.-...+.+|+.+ ...+|....-... ..-+.+..+.+++
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~---------------------~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKL---------------------SLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhh---------------------hhcccccccHHHHHHHhccChHhhccc
Confidence 88888888887 4443 11111122222222 2222221110000 0001222222333
Q ss_pred EEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cC--CcCCCCCCccEEEEeecc-CCCCCcccc-cCCCCC
Q 045237 576 IYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--IL--SEYQFPPSLTQLSLSNTE-LKEDPMPTL-EKLPHL 649 (758)
Q Consensus 576 l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp--~~~~l~~~L~~L~L~~~~-l~~~~~~~l-~~l~~L 649 (758)
+..|.......+...-..+..|+.|..+++. .+ .+ .++.-+.+|+.|.+..|+ ++..-...+ .+.+.|
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t------~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCT------DITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCC------CCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 2222101111111111223444444444421 11 00 111112666666666664 222222233 356778
Q ss_pred ceEEEeccccCCce-eEEeCCCCCccccEEeeccCCCcCce-----EECcccccccceeeEeccccCCC-CchhhcCCCC
Q 045237 650 LVLKLKQNSYSGRK-LACVGSGGFPKLKILHLKSMFWLEEW-----TMGARAMTKLESLIINPCAYLKK-LPEELWRIES 722 (758)
Q Consensus 650 ~~L~L~~n~~~~~~-~~~~~~~~~~~L~~L~L~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~s 722 (758)
+.+++..+...... +... ..+++.|+.|.+++|..++.- ......+..|+.|.+.+||.+.. .-..+..+++
T Consensus 349 e~l~~e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhcccccceehhhhHhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 88877766543222 1111 457889999999988766533 33345678899999999997653 3345677899
Q ss_pred CcEEEEecCcHHHHHHhhc
Q 045237 723 FRKLELHWPQPELRKKLRA 741 (758)
Q Consensus 723 L~~L~l~~c~~~~~~~~~~ 741 (758)
|+.+++.+|...+.+.+++
T Consensus 428 Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISR 446 (483)
T ss_pred cceeeeechhhhhhhhhHH
Confidence 9999999999888887776
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=7e-09 Score=106.80 Aligned_cols=206 Identities=20% Similarity=0.152 Sum_probs=126.6
Q ss_pred cCcccccEEeccCCCCcccCc--cccCCCCCcEEEccCCcCc---ccchhhcccccCcEEEcCCCCCCCCCCCccccCcc
Q 045237 474 ENLFLLRCLKLDVPSLKSLPS--SLCNLLNLQTLDMPSSYID---HTPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKN 548 (758)
Q Consensus 474 ~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~ 548 (758)
.++.+||...|.++.+...+. ....|++++.|||+.|-+. .+-.-...|++|+.|+++.+ .+....+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~------- 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFIS------- 189 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCcc-------
Confidence 467788888888888776663 5667888888888887443 33344556677777766653 1111111
Q ss_pred cccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccCCcCCCCCCccEE
Q 045237 549 LIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMILSEYQFPPSLTQL 628 (758)
Q Consensus 549 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp~~~~l~~~L~~L 628 (758)
...-..+++|+.|.++.|. .....+-..+..+ |+|+.|
T Consensus 190 -------------s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~f----------------------------Psl~~L 227 (505)
T KOG3207|consen 190 -------------SNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTF----------------------------PSLEVL 227 (505)
T ss_pred -------------ccchhhhhhhheEEeccCC-CCHHHHHHHHHhC----------------------------CcHHHh
Confidence 0011146677788888773 1122222222223 666666
Q ss_pred EEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCce--EEC-----cccccccce
Q 045237 629 SLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEW--TMG-----ARAMTKLES 701 (758)
Q Consensus 629 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~~-----~~~l~~L~~ 701 (758)
.|..|............+..|+.|+|++|.+........ .+.||.|..|+++.|. +.++ |.. ...+|+|+.
T Consensus 228 ~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~-~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 228 YLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK-VGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred hhhcccccceecchhhhhhHHhhccccCCcccccccccc-cccccchhhhhccccC-cchhcCCCccchhhhccccccee
Confidence 666663211222233457789999999998766543333 6789999999999875 4433 333 357999999
Q ss_pred eeEeccccCCCCch--hhcCCCCCcEEEEecCc
Q 045237 702 LIINPCAYLKKLPE--ELWRIESFRKLELHWPQ 732 (758)
Q Consensus 702 L~l~~c~~l~~lp~--~l~~l~sL~~L~l~~c~ 732 (758)
|++..|+. ...+. .+..+++|++|.+..++
T Consensus 306 L~i~~N~I-~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 306 LNISENNI-RDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred eecccCcc-ccccccchhhccchhhhhhccccc
Confidence 99999995 22322 35556777777765554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=6.2e-08 Score=91.33 Aligned_cols=101 Identities=25% Similarity=0.299 Sum_probs=40.1
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccc-cCCCCCcE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSL-CNLLNLQT 504 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~ 504 (758)
.++|.|.+.++.+.. ....-..+.+|++|++++|.+++++ .+..+++|+.|++++|.|+++++.+ ..+++|++
T Consensus 19 ~~~~~L~L~~n~I~~-----Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-----IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-----ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 346777777776642 2222235788999999999998876 4778999999999999999887666 46899999
Q ss_pred EEccCCcCcccc--hhhcccccCcEEEcCC
Q 045237 505 LDMPSSYIDHTP--EDIWNMHKLMHLNFGC 532 (758)
Q Consensus 505 L~L~~~~l~~lp--~~i~~l~~L~~L~l~~ 532 (758)
|++++|.+..+- ..+..+++|++|++.+
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence 999999887663 3467788899998876
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.42 E-value=1.8e-08 Score=101.11 Aligned_cols=243 Identities=17% Similarity=0.192 Sum_probs=136.1
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCC----CCCc-------cccCcccccEEeccCCCCc----
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLD----QFPS-------GIENLFLLRCLKLDVPSLK---- 490 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~----~lp~-------~i~~l~~Lr~L~L~~~~i~---- 490 (758)
..+..|.+.++.............+.+-+.||.-++++.... .+|+ .+-.+++|++|+||.|-+.
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 567788888887765555677788888899999999876432 4443 3446679999999998665
Q ss_pred -ccCccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCC---CCcccc
Q 045237 491 -SLPSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCS---CTPDTL 565 (758)
Q Consensus 491 -~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~l 565 (758)
.+-+-+..++.|+.|.|.+|.+...-.. ++. -|.+|..+. .+++-+.|+++....+..... .....+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~~~k------k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELAVNK------KAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHHHHh------ccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 3334467799999999999987643211 111 111111110 111222333333222211110 122234
Q ss_pred CCCCCCCeEEEEecC--chhhhhHHHHhhccCCCceEEeeecCCCcccccc-------cC-CcCCCCCCccEEEEeeccC
Q 045237 566 GRLPNVQTLKIYGDL--SSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM-------IL-SEYQFPPSLTQLSLSNTEL 635 (758)
Q Consensus 566 ~~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l-------lp-~~~~l~~~L~~L~L~~~~l 635 (758)
...+.|+.+.+..+. ......+...+..+++|+.|+|.. |-+ +. .+..+ ++|+.|++++|.+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-------Ntft~egs~~LakaL~s~-~~L~El~l~dcll 253 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-------NTFTLEGSVALAKALSSW-PHLRELNLGDCLL 253 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-------chhhhHHHHHHHHHhccc-chheeeccccccc
Confidence 455666666666554 122234555666667777777666 333 22 33344 6777777777766
Q ss_pred CCCCcccc-----cCCCCCceEEEeccccCCceeEE--eCCCCCccccEEeeccCC
Q 045237 636 KEDPMPTL-----EKLPHLLVLKLKQNSYSGRKLAC--VGSGGFPKLKILHLKSMF 684 (758)
Q Consensus 636 ~~~~~~~l-----~~l~~L~~L~L~~n~~~~~~~~~--~~~~~~~~L~~L~L~~~~ 684 (758)
.......+ ...|+|+.|.+.+|.++...... ......|.|+.|+|++|.
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 54332222 23677777777777654321100 002335777777777775
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=2.6e-08 Score=97.52 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=93.6
Q ss_pred CCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCC
Q 045237 453 FKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGC 532 (758)
Q Consensus 453 l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 532 (758)
.+.|..||||+|.++.+-.++.-++.+|.|+++.|+|..+- ++..|++|+.||||+|.+.++-..-.+|-|.+.|.+..
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45678888888888877777777888888888888887664 37788888888888888777765556777788887765
Q ss_pred C-CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecC
Q 045237 533 I-TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDL 580 (758)
Q Consensus 533 ~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 580 (758)
+ .....+++++-+|..|++.+++...-.....+|+++.|+.|.+.+|.
T Consensus 362 N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 362 NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 2 23345667777777777777765443455677888888888888774
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=5e-09 Score=102.52 Aligned_cols=145 Identities=19% Similarity=0.132 Sum_probs=78.5
Q ss_pred CCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccC-CcCCCCCCccEEEEeeccCC--
Q 045237 560 CTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQFPPSLTQLSLSNTELK-- 636 (758)
Q Consensus 560 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~l~~~L~~L~L~~~~l~-- 636 (758)
.+...++.-.+|+.|++++|..-...++.--+.+++.|.+|+|+||+..-+ .+- .+.+..++|+.|+|++|...
T Consensus 225 ~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~---~Vtv~V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 225 PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE---KVTVAVAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch---hhhHHHhhhchhhhhhhhhhhHhhhh
Confidence 445566666777777777774222223334456777788888877431000 011 12222367788888887521
Q ss_pred CCCccc-ccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcC-ceEECcccccccceeeEeccc
Q 045237 637 EDPMPT-LEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLE-EWTMGARAMTKLESLIINPCA 708 (758)
Q Consensus 637 ~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~c~ 708 (758)
...... ...+|+|..|+|++|.......... +..|+.|++|.++.|-.+. +--..+...|+|.+|++.+|-
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 111222 2457777777777654322211111 4556777777777775443 222345566777777777765
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.9e-09 Score=102.57 Aligned_cols=178 Identities=19% Similarity=0.173 Sum_probs=128.4
Q ss_pred cCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc----cC-CcC
Q 045237 545 SLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM----IL-SEY 619 (758)
Q Consensus 545 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l----lp-~~~ 619 (758)
.||.|+++........+...+..+.+|+.|++.|+ ...+.+...+.+-.+|+.|+|+.+ +++ +. -+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~--~LdD~I~~~iAkN~~L~~lnlsm~------sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL--RLDDPIVNTIAKNSNLVRLNLSMC------SGFTENALQLLLS 257 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc--ccCcHHHHHHhccccceeeccccc------cccchhHHHHHHH
Confidence 46777766555433234455778999999999999 688888899999999999999985 344 22 345
Q ss_pred CCCCCccEEEEeeccCCCCCcccc-c-CCCCCceEEEecccc--CCceeEEeCCCCCccccEEeeccCCCcCc-eEECcc
Q 045237 620 QFPPSLTQLSLSNTELKEDPMPTL-E-KLPHLLVLKLKQNSY--SGRKLACVGSGGFPKLKILHLKSMFWLEE-WTMGAR 694 (758)
Q Consensus 620 ~l~~~L~~L~L~~~~l~~~~~~~l-~-~l~~L~~L~L~~n~~--~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-l~~~~~ 694 (758)
++ +.|..|+|++|.+..+....+ . --++|+.|+|+|+.- ........ ...+|+|.+|+|++|..+.. ....+.
T Consensus 258 sc-s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 258 SC-SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred hh-hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHHH
Confidence 56 999999999998765443322 1 246899999998642 11111111 35689999999999987663 333456
Q ss_pred cccccceeeEeccccCCCCch---hhcCCCCCcEEEEecCcHH
Q 045237 695 AMTKLESLIINPCAYLKKLPE---ELWRIESFRKLELHWPQPE 734 (758)
Q Consensus 695 ~l~~L~~L~l~~c~~l~~lp~---~l~~l~sL~~L~l~~c~~~ 734 (758)
.++.|++|.++.|..+ +|. .+...|+|.+|++.||-++
T Consensus 336 kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 7899999999999855 343 4567899999999998644
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=4.8e-07 Score=69.81 Aligned_cols=59 Identities=31% Similarity=0.463 Sum_probs=40.8
Q ss_pred CeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcC
Q 045237 454 KLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYI 512 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l 512 (758)
++|++|++++|.++.+| ..+..+++|++|++++|.++.+|. .+.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35677777777777666 456677777777777777776654 457777777777777653
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.17 E-value=1.8e-06 Score=99.51 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=55.4
Q ss_pred cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECc
Q 045237 615 IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGA 693 (758)
Q Consensus 615 lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 693 (758)
+| .+..+ ++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+..+.. ++.+++|+.|+|++|.....+|..+
T Consensus 434 ip~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~--l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 434 IPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES--LGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CCHHHhCC-CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH--HhcCCCCCEEECcCCcccccCChHH
Confidence 45 55555 66666666666666666666666666666666666666655544 4556666666666665444555544
Q ss_pred ccc-cccceeeEeccccCCC
Q 045237 694 RAM-TKLESLIINPCAYLKK 712 (758)
Q Consensus 694 ~~l-~~L~~L~l~~c~~l~~ 712 (758)
+.. .++..+++.+|+.+..
T Consensus 511 ~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 511 GGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred hhccccCceEEecCCccccC
Confidence 432 3455566666554443
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.12 E-value=4.7e-06 Score=96.06 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=72.0
Q ss_pred eeEEEEcCCCCCC-CCCccccCcccccEEeccCCCCc-ccCccccCCCCCcEEEccCCcCc-ccchhhcccccCcEEEcC
Q 045237 455 LLRVLNMGSLVLD-QFPSGIENLFLLRCLKLDVPSLK-SLPSSLCNLLNLQTLDMPSSYID-HTPEDIWNMHKLMHLNFG 531 (758)
Q Consensus 455 ~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~ 531 (758)
.++.|+|+++.+. .+|..++++++|++|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3777888888877 77888888888888888888887 78888888888888888888665 678888888888888887
Q ss_pred CC---CCCCCCCCcc-ccCcccccccc
Q 045237 532 CI---TLPAPPENYC-SSLKNLIFISA 554 (758)
Q Consensus 532 ~~---~~~~~~~~~l-~~L~~L~l~~~ 554 (758)
++ ..+|..++.+ .++..+++.++
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 63 1344444332 23344444433
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=1.1e-06 Score=86.46 Aligned_cols=86 Identities=20% Similarity=0.209 Sum_probs=52.3
Q ss_pred HHHhccCCeeEEEEcCCCCCC---CCCccccCcccccEEeccCCCCcccCccc-cCCCCCcEEEccCCcC--cccchhhc
Q 045237 447 ENICKKFKLLRVLNMGSLVLD---QFPSGIENLFLLRCLKLDVPSLKSLPSSL-CNLLNLQTLDMPSSYI--DHTPEDIW 520 (758)
Q Consensus 447 ~~~~~~l~~Lr~L~L~~~~l~---~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~l--~~lp~~i~ 520 (758)
..+-...+.++.|||.+|.++ .+-..+.+|++|+.|+|++|.+..--..+ ..+.+|++|-|.++.+ +.....+.
T Consensus 64 ~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 344456677777888887776 23333456778888888877654211111 3456777777777743 44445556
Q ss_pred ccccCcEEEcCC
Q 045237 521 NMHKLMHLNFGC 532 (758)
Q Consensus 521 ~l~~L~~L~l~~ 532 (758)
.+|+++.|+++.
T Consensus 144 ~lP~vtelHmS~ 155 (418)
T KOG2982|consen 144 DLPKVTELHMSD 155 (418)
T ss_pred cchhhhhhhhcc
Confidence 666666666654
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.06 E-value=3.3e-06 Score=65.12 Aligned_cols=57 Identities=30% Similarity=0.409 Sum_probs=50.7
Q ss_pred ccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCcccch-hhcccccCcEEEcCCC
Q 045237 477 FLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHLNFGCI 533 (758)
Q Consensus 477 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 533 (758)
++|++|++++|+++.+|. .+.++++|++|++++|.+..+|. .+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 479999999999999985 56899999999999999999975 5889999999998763
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=6.9e-06 Score=58.14 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=27.3
Q ss_pred ccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccc
Q 045237 477 FLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTP 516 (758)
Q Consensus 477 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp 516 (758)
++|++|++++|.|+.+|..+++|++|++|++++|.+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777766777777777777777766654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=1.1e-06 Score=96.69 Aligned_cols=219 Identities=23% Similarity=0.216 Sum_probs=102.9
Q ss_pred hccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEE
Q 045237 450 CKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLN 529 (758)
Q Consensus 450 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 529 (758)
+..++.|..|++.+|.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++++|.+..++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~------------- 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS------------- 156 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-------------
Confidence 34455555555555555544443445555555555555555443 4444455555555555444433
Q ss_pred cCCCCCCCCCCCccccCcccccccccCCCCCCccc--cCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC
Q 045237 530 FGCITLPAPPENYCSSLKNLIFISALHPCSCTPDT--LGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK 607 (758)
Q Consensus 530 l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 607 (758)
++..+++|+.+++.++.... ... +..+.+|+.+.+.++. ... ...+..+..+..+++..
T Consensus 157 ---------~~~~l~~L~~l~l~~n~i~~---ie~~~~~~~~~l~~l~l~~n~--i~~--i~~~~~~~~l~~~~l~~--- 217 (414)
T KOG0531|consen 157 ---------GLESLKSLKLLDLSYNRIVD---IENDELSELISLEELDLGGNS--IRE--IEGLDLLKKLVLLSLLD--- 217 (414)
T ss_pred ---------CCccchhhhcccCCcchhhh---hhhhhhhhccchHHHhccCCc--hhc--ccchHHHHHHHHhhccc---
Confidence 22334444444444443322 111 3455566666666552 110 11111122222223332
Q ss_pred CcccccccC--CcCCCCCC--ccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccC
Q 045237 608 GWQLSQMIL--SEYQFPPS--LTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSM 683 (758)
Q Consensus 608 ~~~~~~llp--~~~~l~~~--L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~ 683 (758)
+.+.+ .+..+ .. |+.+++.++.+. ..+..+..++++..|++.+|.+..... ....+.+..+....+
T Consensus 218 ----n~i~~~~~l~~~-~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~----~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 218 ----NKISKLEGLNEL-VMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG----LERLPKLSELWLNDN 287 (414)
T ss_pred ----ccceeccCcccc-hhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc----ccccchHHHhccCcc
Confidence 22211 11112 22 777777777753 222556667777777777665543221 234455555555554
Q ss_pred CCcCc---eEE-CcccccccceeeEeccccCC
Q 045237 684 FWLEE---WTM-GARAMTKLESLIINPCAYLK 711 (758)
Q Consensus 684 ~~l~~---l~~-~~~~l~~L~~L~l~~c~~l~ 711 (758)
+.... ... .....+.++.+.+.+++.-.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 288 KLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhcchhhhhccccccccccccccccccCcccc
Confidence 42211 111 14456677777777776443
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.1e-05 Score=57.14 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=35.4
Q ss_pred CeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccC
Q 045237 454 KLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLP 493 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp 493 (758)
++|++|++++|.++.+|..+++|++|++|++++|.|+++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4789999999999999988999999999999999999776
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=2.3e-06 Score=94.23 Aligned_cols=166 Identities=20% Similarity=0.251 Sum_probs=111.7
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTL 505 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 505 (758)
..+..|.+.++.+.. ....+..+++|++|++++|.|+++.. +..++.|+.|++.+|.|..++ .+..+++|+.+
T Consensus 95 ~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cceeeeeccccchhh-----cccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 778888888887743 23337789999999999999997753 777888999999999999875 56669999999
Q ss_pred EccCCcCcccchh-hcccccCcEEEcCCCC-CCCCCCCccccCcccccccccCCCCCCccccCCCCC--CCeEEEEecCc
Q 045237 506 DMPSSYIDHTPED-IWNMHKLMHLNFGCIT-LPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPN--VQTLKIYGDLS 581 (758)
Q Consensus 506 ~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 581 (758)
++++|.+..+... ...+.+|+.+++.++. ....++..+..+..+++..+... ....+..+.. |+.+++.++.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~---~~~~l~~~~~~~L~~l~l~~n~- 243 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKIS---KLEGLNELVMLHLRELYLSGNR- 243 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccce---eccCcccchhHHHHHHhcccCc-
Confidence 9999998888664 5788889988887632 22222333333333333322221 1222333333 7777787762
Q ss_pred hhhhhHHHHhhccCCCceEEeee
Q 045237 582 SYQSGLSKSLRELLKLESLKLVN 604 (758)
Q Consensus 582 ~~~~~l~~~l~~~~~L~~L~L~~ 604 (758)
....+..+..+..+..|++..
T Consensus 244 --i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 244 --ISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred --cccccccccccccccccchhh
Confidence 222224455566666666665
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.84 E-value=4.4e-06 Score=81.20 Aligned_cols=240 Identities=17% Similarity=0.106 Sum_probs=151.0
Q ss_pred ccCCeeEEEEcCCCCCC-----CCCccccCcccccEEeccCC--C-Cc-ccCc-------cccCCCCCcEEEccCCcC-c
Q 045237 451 KKFKLLRVLNMGSLVLD-----QFPSGIENLFLLRCLKLDVP--S-LK-SLPS-------SLCNLLNLQTLDMPSSYI-D 513 (758)
Q Consensus 451 ~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~--~-i~-~lp~-------~i~~L~~L~~L~L~~~~l-~ 513 (758)
.-+..+..++||+|.|. .+...|.+-.+|+..+++.- + .. ++|+ .+-+|++|++.+||.|.+ .
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34778888888888876 34455666678888888752 2 11 4443 456899999999999954 3
Q ss_pred ccc----hhhcccccCcEEEcCCCCCCCCCCCcc-ccCcccccccccCCCCCCccccCCCCCCCeEEEEecC--chhhhh
Q 045237 514 HTP----EDIWNMHKLMHLNFGCITLPAPPENYC-SSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDL--SSYQSG 586 (758)
Q Consensus 514 ~lp----~~i~~l~~L~~L~l~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~ 586 (758)
..| +-+.+-+.|.||.++++..-|..=+.. +.|++|. ......+-|.|+...+..|. +.....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la----------~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA----------YNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH----------HHhhhccCCCceEEEeccchhccCcHHH
Confidence 334 346677889999998752223221111 2344432 11223456778888877764 222333
Q ss_pred HHHHhhccCCCceEEeeecCCCcccccccC---------CcCCCCCCccEEEEeeccCCCCCc----ccccCCCCCceEE
Q 045237 587 LSKSLRELLKLESLKLVNKSKGWQLSQMIL---------SEYQFPPSLTQLSLSNTELKEDPM----PTLEKLPHLLVLK 653 (758)
Q Consensus 587 l~~~l~~~~~L~~L~L~~~~~~~~~~~llp---------~~~~l~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~ 653 (758)
....+....+|+.+.+.. |++=| .+..+ .+|+.|+|.+|.++.... ..+...+.|+.|.
T Consensus 177 ~a~~l~sh~~lk~vki~q-------NgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 177 SAALLESHENLKEVKIQQ-------NGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred HHHHHHhhcCceeEEeee-------cCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 344566667899999988 44422 22334 899999999998754322 2445677899999
Q ss_pred EeccccCCcee-----EEeCCCCCccccEEeeccCCCcCce------E-ECcccccccceeeEecccc
Q 045237 654 LKQNSYSGRKL-----ACVGSGGFPKLKILHLKSMFWLEEW------T-MGARAMTKLESLIINPCAY 709 (758)
Q Consensus 654 L~~n~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~l~~l------~-~~~~~l~~L~~L~l~~c~~ 709 (758)
+..|-+..... .+. -..+|+|..|...++..-... + ..-+++|-|..|.+.+|..
T Consensus 249 lnDClls~~G~~~v~~~f~-e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFN-EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred ccchhhccccHHHHHHHhh-hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 98886654321 111 234788888888876532221 1 1236789999999998883
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.82 E-value=3.3e-07 Score=94.20 Aligned_cols=275 Identities=15% Similarity=0.083 Sum_probs=148.7
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCC-CC--CCCccccCcccccEEeccCCC-Cc--ccCccccCC
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLV-LD--QFPSGIENLFLLRCLKLDVPS-LK--SLPSSLCNL 499 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~--~lp~~i~~l~~Lr~L~L~~~~-i~--~lp~~i~~L 499 (758)
+++..|.+.++..... .....+-..++.|+.|++..|. ++ .+-.....+++|.||+++.|. |+ .+-.-..++
T Consensus 164 pnIehL~l~gc~~iTd--~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITD--SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred CchhhhhhhcceeccH--HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 6777777776664332 4555667889999999999975 55 222234568899999999975 44 233344567
Q ss_pred CCCcEEEccCC-cCc--ccchhhcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCc-cccCCCCCCCeEE
Q 045237 500 LNLQTLDMPSS-YID--HTPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTP-DTLGRLPNVQTLK 575 (758)
Q Consensus 500 ~~L~~L~L~~~-~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~ 575 (758)
.+|+.+.++|| .++ .+-..-....-+..++ +..|........ ..-..+..|+.|.
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln---------------------l~~c~~lTD~~~~~i~~~c~~lq~l~ 300 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLN---------------------LQHCNQLTDEDLWLIACGCHALQVLC 300 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccc---------------------hhhhccccchHHHHHhhhhhHhhhhc
Confidence 77888888887 221 1111001111122222 222221110000 1111234455555
Q ss_pred EEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc----cCCcCCCCCCccEEEEeeccCCCC--CcccccCCCCC
Q 045237 576 IYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM----ILSEYQFPPSLTQLSLSNTELKED--PMPTLEKLPHL 649 (758)
Q Consensus 576 l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l----lp~~~~l~~~L~~L~L~~~~l~~~--~~~~l~~l~~L 649 (758)
.+++.......+.+-..+..+|+.|.+..+ ..| +-.++..++.|+.+++..|....+ +...-.+++.|
T Consensus 301 ~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c------~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 301 YSSCTDITDEVLWALGQHCHNLQVLELSGC------QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred ccCCCCCchHHHHHHhcCCCceEEEecccc------chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 555432111222222334455555555553 111 111222226777777777753221 22333467788
Q ss_pred ceEEEeccccCCce---eEEeCCCCCccccEEeeccCCCcCc-eEECcccccccceeeEeccccCCCCc--hhhcCCCCC
Q 045237 650 LVLKLKQNSYSGRK---LACVGSGGFPKLKILHLKSMFWLEE-WTMGARAMTKLESLIINPCAYLKKLP--EELWRIESF 723 (758)
Q Consensus 650 ~~L~L~~n~~~~~~---~~~~~~~~~~~L~~L~L~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~sL 723 (758)
+.|.|+.|...... .-.....+...|+.|.|++|+.+++ .-.....+++|+.+++-+|.....-| ..-.++|++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence 88888765432211 0000134567889999999987663 23345678899999999998776433 345567777
Q ss_pred cEEEEe
Q 045237 724 RKLELH 729 (758)
Q Consensus 724 ~~L~l~ 729 (758)
+...+.
T Consensus 455 ~v~a~~ 460 (483)
T KOG4341|consen 455 KVHAYF 460 (483)
T ss_pred eehhhc
Confidence 765554
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=1.3e-05 Score=92.19 Aligned_cols=104 Identities=24% Similarity=0.229 Sum_probs=67.5
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCC--CCCccccCcccccEEeccCCCCcccCccccCCCCCc
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLD--QFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQ 503 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 503 (758)
.+|+.|.+.|.... ...++......+|.|+.|.+++-.+. .+-.-..++++|+.||+++++++.+ ..+++|+|||
T Consensus 122 ~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 44555555443322 11455566667777777777776654 3334455677788888888877777 5777888888
Q ss_pred EEEccCCcCcccc--hhhcccccCcEEEcCC
Q 045237 504 TLDMPSSYIDHTP--EDIWNMHKLMHLNFGC 532 (758)
Q Consensus 504 ~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~ 532 (758)
+|.+++-.+..-. .++.+|++|++||++.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 8877766555432 4567788888888875
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00012 Score=77.80 Aligned_cols=135 Identities=19% Similarity=0.166 Sum_probs=82.5
Q ss_pred hccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCC-CCcccCccccCCCCCcEEEccCC-cCcccchhhcccccCcE
Q 045237 450 CKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVP-SLKSLPSSLCNLLNLQTLDMPSS-YIDHTPEDIWNMHKLMH 527 (758)
Q Consensus 450 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~ 527 (758)
+..+++++.|++++|.++.+|. + -.+|+.|.+++| .++.+|..+. .+|+.|++++| .+..+|.. |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence 4556889999999999998883 1 237999999985 4778887663 69999999999 88888865 455
Q ss_pred EEcCCCCCCCCCCCcc-ccCcccccccccCCC-CCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeee
Q 045237 528 LNFGCITLPAPPENYC-SSLKNLIFISALHPC-SCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVN 604 (758)
Q Consensus 528 L~l~~~~~~~~~~~~l-~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 604 (758)
|++.+.. . ..+..+ ++|+.|.+.+..... ...+.. --++|+.|.+++|. . ..+|..+. .+|+.|.++.
T Consensus 117 L~L~~n~-~-~~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~--~-i~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSA-T-DSIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCS--N-IILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCC-C-cccccCcchHhheeccccccccccccccc--cCCcccEEEecCCC--c-ccCccccc--ccCcEEEecc
Confidence 5554310 0 012222 245566543322111 011111 12578888888873 1 12333332 4677777655
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.52 E-value=9e-05 Score=78.63 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=82.1
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCC-CCCCCccccCcccccEEeccCC-CCcccCccccCCCCCc
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLV-LDQFPSGIENLFLLRCLKLDVP-SLKSLPSSLCNLLNLQ 503 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~ 503 (758)
.+++.|.+.++... .++ .--.+|+.|.+++|. ++.+|..+. .+|++|++++| .+..+|. +|+
T Consensus 52 ~~l~~L~Is~c~L~-----sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 52 RASGRLYIKDCDIE-----SLP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred cCCCEEEeCCCCCc-----ccC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 77889999887553 222 122359999999876 778887653 58999999998 6878885 467
Q ss_pred EEEccCCc---CcccchhhcccccCcEEEcCCCC-CCCCCCC-cc-ccCcccccccccCCCCCCccccCCCCCCCeEEEE
Q 045237 504 TLDMPSSY---IDHTPEDIWNMHKLMHLNFGCIT-LPAPPEN-YC-SSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIY 577 (758)
Q Consensus 504 ~L~L~~~~---l~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~-~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 577 (758)
.|+++.+. +..+|.+ |+.|.+.+.. ..+..+. .+ ++|++|.+.+|.... .|..+. .+|+.|.++
T Consensus 116 ~L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~--LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNG------LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII--LPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcccccCcch------HhheeccccccccccccccccCCcccEEEecCCCccc--Cccccc--ccCcEEEec
Confidence 77777653 5666665 4455443210 1111111 12 588999988776532 444443 588888887
Q ss_pred ec
Q 045237 578 GD 579 (758)
Q Consensus 578 ~~ 579 (758)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 65
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=1.4e-05 Score=78.86 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=48.5
Q ss_pred eeEEEEcCCCCCCCCC--cccc-CcccccEEeccCCCCc---ccCccccCCCCCcEEEccCCcCcccchhh-cccccCcE
Q 045237 455 LLRVLNMGSLVLDQFP--SGIE-NLFLLRCLKLDVPSLK---SLPSSLCNLLNLQTLDMPSSYIDHTPEDI-WNMHKLMH 527 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp--~~i~-~l~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~~~l~~lp~~i-~~l~~L~~ 527 (758)
.+..|-+.++.+...- ..|+ .+.+++.|+|.+|.|. ++-.-+.+|+.|++|+|+.|.+..--... ..+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4456667777665322 2233 4568888999888877 44444578888888888888654321111 23456677
Q ss_pred EEcCC
Q 045237 528 LNFGC 532 (758)
Q Consensus 528 L~l~~ 532 (758)
|.+++
T Consensus 126 lVLNg 130 (418)
T KOG2982|consen 126 LVLNG 130 (418)
T ss_pred EEEcC
Confidence 66654
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=0.00013 Score=84.12 Aligned_cols=125 Identities=21% Similarity=0.237 Sum_probs=91.0
Q ss_pred CceeEEEeeCCCCc-cccccccc---cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccc
Q 045237 404 RTIKRFAVPKNLTK-FVSLEHID---TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLL 479 (758)
Q Consensus 404 ~~~r~Ls~~~~~~~-~~~~~~~~---~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L 479 (758)
.+++||.+...... ...+..++ |.|++|.+.+..... ......+.+|++|+.||+|+++++.+ ..+++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 34566666521111 11333333 899999999987755 33557789999999999999999988 779999999
Q ss_pred cEEeccCCCCcccC--ccccCCCCCcEEEccCCcCcccch-------hhcccccCcEEEcCC
Q 045237 480 RCLKLDVPSLKSLP--SSLCNLLNLQTLDMPSSYIDHTPE-------DIWNMHKLMHLNFGC 532 (758)
Q Consensus 480 r~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~-------~i~~l~~L~~L~l~~ 532 (758)
+.|.+++-.+..-+ ..+.+|++|++||+|.......+. .-..||+||.||.++
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 99999987776322 356789999999999874433331 122489999999986
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.31 E-value=5.4e-05 Score=66.34 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=66.0
Q ss_pred HhccCCeeEEEEcCCCCCCCCCccccC-cccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcE
Q 045237 449 ICKKFKLLRVLNMGSLVLDQFPSGIEN-LFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMH 527 (758)
Q Consensus 449 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~-l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 527 (758)
.+.....|...+|++|.++++|..+.. .+-++.|++++|.|..+|..+..++.|+.|+++.|.+...|+-+..|.+|-.
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 345566777788888888888766654 3477888888888888888888888888888888888888888877888888
Q ss_pred EEcCCC
Q 045237 528 LNFGCI 533 (758)
Q Consensus 528 L~l~~~ 533 (758)
|+..++
T Consensus 128 Lds~~n 133 (177)
T KOG4579|consen 128 LDSPEN 133 (177)
T ss_pred hcCCCC
Confidence 877664
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.30 E-value=8.1e-06 Score=89.49 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=9.8
Q ss_pred ccccCCCCCcEEEccCCcCc
Q 045237 494 SSLCNLLNLQTLDMPSSYID 513 (758)
Q Consensus 494 ~~i~~L~~L~~L~L~~~~l~ 513 (758)
-.|..+..|+.|.|++|.+.
T Consensus 103 i~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred ceeccccceeeEEecCcchh
Confidence 34444455555555555443
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.22 E-value=5.5e-06 Score=90.79 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=59.6
Q ss_pred hhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhccccc
Q 045237 445 DCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHK 524 (758)
Q Consensus 445 ~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~ 524 (758)
.++..+.-++.|+.|+|+.|++.+.- .+..|++|+.|||+.|.+..+|..-..--+|+.|.+++|.++++- ++.+|.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~Lks 255 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKS 255 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhh
Confidence 34455566666666777766666443 456666666677766666666533211123666666666666553 4666666
Q ss_pred CcEEEcCCCC----CCCCCCCccccCcccccccc
Q 045237 525 LMHLNFGCIT----LPAPPENYCSSLKNLIFISA 554 (758)
Q Consensus 525 L~~L~l~~~~----~~~~~~~~l~~L~~L~l~~~ 554 (758)
|++||++.+. .--..++.|..|..|.+.++
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 6666665521 11112344445555555444
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.81 E-value=0.00018 Score=63.05 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=69.1
Q ss_pred hhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchh
Q 045237 444 LDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPED 518 (758)
Q Consensus 444 ~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~ 518 (758)
.+++.+-.+++.+..|+|++|.+..+|..+..++.||.|+++.|.+...|.-+..|.+|-.|+..++.+.++|.+
T Consensus 67 ~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 67 KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 566777788889999999999999999999999999999999999999999998999999999999988888876
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.50 E-value=0.00028 Score=79.64 Aligned_cols=240 Identities=21% Similarity=0.191 Sum_probs=115.7
Q ss_pred HHhccCCeeEEEEcCCCC-CCC--CCccccCcccccEEeccCC-C-Ccc----cCccccCCCCCcEEEccCCc-Ccccc-
Q 045237 448 NICKKFKLLRVLNMGSLV-LDQ--FPSGIENLFLLRCLKLDVP-S-LKS----LPSSLCNLLNLQTLDMPSSY-IDHTP- 516 (758)
Q Consensus 448 ~~~~~l~~Lr~L~L~~~~-l~~--lp~~i~~l~~Lr~L~L~~~-~-i~~----lp~~i~~L~~L~~L~L~~~~-l~~lp- 516 (758)
.....+++|+.|.+.++. +.. +-.....+++|+.|+++++ . +.. .+.....+++|+.|+++++. +...-
T Consensus 182 ~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 182 RLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 344456677777777664 332 2234455667777777652 1 111 11223445666666666663 32210
Q ss_pred hhhcccccCcEEEcCCCCCCCCCCCccccCcccccccccC-CCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccC
Q 045237 517 EDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALH-PCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELL 595 (758)
Q Consensus 517 ~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~ 595 (758)
..+. ..+++|++|.+..|.. ....+......+++|++|++++|.......+.....+++
T Consensus 262 ~~l~--------------------~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 262 SALA--------------------SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred HHHH--------------------hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 0111 1144555555444442 221233344567788888888885333344555556677
Q ss_pred CCceEEeeecCCCcccccccCCcCCCCCCccEEEEeeccCCC---CCcccccCCCCCceEEEeccccCCceeEEeCCCCC
Q 045237 596 KLESLKLVNKSKGWQLSQMILSEYQFPPSLTQLSLSNTELKE---DPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGF 672 (758)
Q Consensus 596 ~L~~L~L~~~~~~~~~~~llp~~~~l~~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 672 (758)
+|+.|.+... ... +.++.+.+..+.... ...-.+..+++|+.+.+..+.......
T Consensus 322 ~l~~l~~~~~-------------~~c-~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 379 (482)
T KOG1947|consen 322 NLRELKLLSL-------------NGC-PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL-------- 379 (482)
T ss_pred chhhhhhhhc-------------CCC-ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch--------
Confidence 7777665541 112 455566555544211 122244567777777776555221111
Q ss_pred ccccEEeeccCCCc-CceEECcccccccceeeEeccccCCCCc-hhhcC-CCCCcEEEEecCcH
Q 045237 673 PKLKILHLKSMFWL-EEWTMGARAMTKLESLIINPCAYLKKLP-EELWR-IESFRKLELHWPQP 733 (758)
Q Consensus 673 ~~L~~L~L~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~-l~sL~~L~l~~c~~ 733 (758)
.+.+.+|+.+ ..+.........|+.|++..|.....-- ..... +.++..+.+.+|+.
T Consensus 380 ----~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 380 ----ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ----HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 2233333333 1221112222336677777776544211 11111 55566666666663
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.43 E-value=0.0016 Score=63.94 Aligned_cols=250 Identities=16% Similarity=0.138 Sum_probs=133.9
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCC----CCC-------ccccCcccccEEeccCCCCc-ccC
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLD----QFP-------SGIENLFLLRCLKLDVPSLK-SLP 493 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~----~lp-------~~i~~l~~Lr~L~L~~~~i~-~lp 493 (758)
..+..+.+.++.+.......+...+.+-++|++.+++..... .+| +.+-+|++|+..+|+.|-+. ..|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 456667777777765544566677778888998888875432 333 34567899999999998766 444
Q ss_pred c----cccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCC---Ccccc
Q 045237 494 S----SLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSC---TPDTL 565 (758)
Q Consensus 494 ~----~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l 565 (758)
+ .|..-+.|.+|.+++|.+..+... |++ -|.||-.. ....+-+.|++.....+....+. ....+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la~n------KKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLAYN------KKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHHHH------hhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 3 456778999999999987655321 221 11111000 00111122333222221111100 11112
Q ss_pred CCCCCCCeEEEEecC--c-hhhhhHHHHhhccCCCceEEeeecCCCcccccccC-CcCCCCCCccEEEEeeccCCCCCcc
Q 045237 566 GRLPNVQTLKIYGDL--S-SYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQFPPSLTQLSLSNTELKEDPMP 641 (758)
Q Consensus 566 ~~l~~L~~L~l~~~~--~-~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~l~~~L~~L~L~~~~l~~~~~~ 641 (758)
..-.+|+.+.+..|. . ....-+...+..+++|+.|+|..|-....-...+. .+..+ +.|+.|.+.+|-++.....
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W-~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW-NLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc-chhhhccccchhhccccHH
Confidence 223466666666653 1 11112233455667777777776210000000022 23334 6678888888876543322
Q ss_pred c----c--cCCCCCceEEEeccccCCceeEEe-----CCCCCccccEEeeccCC
Q 045237 642 T----L--EKLPHLLVLKLKQNSYSGRKLACV-----GSGGFPKLKILHLKSMF 684 (758)
Q Consensus 642 ~----l--~~l~~L~~L~L~~n~~~~~~~~~~-----~~~~~~~L~~L~L~~~~ 684 (758)
. + -..|+|..|...+|...+...... ..+.+|-|..|.+.+|+
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 2 1 135788888887776554433221 13456777777777765
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.25 E-value=0.0059 Score=57.59 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=16.4
Q ss_pred cccccceeeEeccccCCCCc----hhhcCCCCCcEEEEecC
Q 045237 695 AMTKLESLIINPCAYLKKLP----EELWRIESFRKLELHWP 731 (758)
Q Consensus 695 ~l~~L~~L~l~~c~~l~~lp----~~l~~l~sL~~L~l~~c 731 (758)
.||+|++|.+-+|+.-. -+ ..+..+|+|+.|+..+-
T Consensus 111 ~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCccceeeecCCchhc-ccCceeEEEEecCcceEeehhhh
Confidence 44555555555555221 11 12344555555555544
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.24 E-value=0.00039 Score=78.43 Aligned_cols=175 Identities=24% Similarity=0.201 Sum_probs=85.7
Q ss_pred cccCcccccccccCCCCCCccccC-CCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccC-CcCC
Q 045237 543 CSSLKNLIFISALHPCSCTPDTLG-RLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQ 620 (758)
Q Consensus 543 l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~ 620 (758)
+.+|+.|++..+..........+. .+++|+.|.+.+|.......+......+++|++|+++++..-.+ .. +. ....
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-~~-l~~~~~~ 319 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-SG-LEALLKN 319 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH-HH-HHHHHHh
Confidence 456666666666532213333333 37888888877774324445555566677788888876421000 00 11 1112
Q ss_pred CCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCC--ceeEEeCCCCCccccEEeeccCCCcCceEECcccccc
Q 045237 621 FPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSG--RKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTK 698 (758)
Q Consensus 621 l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~--~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~ 698 (758)
+ ++|+.|.+..+. .++.++.+.+.++.... ...... ...+++|+.+.+..|. .....
T Consensus 320 c-~~l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~~~~~~-~~~~~~l~~~~l~~~~-~~~~~-------- 378 (482)
T KOG1947|consen 320 C-PNLRELKLLSLN----------GCPSLTDLSLSGLLTLTSDDLAELI-LRSCPKLTDLSLSYCG-ISDLG-------- 378 (482)
T ss_pred C-cchhhhhhhhcC----------CCccHHHHHHHHhhccCchhHhHHH-HhcCCCcchhhhhhhh-ccCcc--------
Confidence 2 444444333322 14444444444322111 111111 3445555555555544 22111
Q ss_pred cceeeEeccccC-CCCchhhcCCCCCcEEEEecCcHHHHHHhhc
Q 045237 699 LESLIINPCAYL-KKLPEELWRIESFRKLELHWPQPELRKKLRA 741 (758)
Q Consensus 699 L~~L~l~~c~~l-~~lp~~l~~l~sL~~L~l~~c~~~~~~~~~~ 741 (758)
..+.+.+|+.+ ..+........+|+.|.+..|.......+..
T Consensus 379 -~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~ 421 (482)
T KOG1947|consen 379 -LELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRC 421 (482)
T ss_pred -hHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHH
Confidence 14566777766 3333333334448999999998555554443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.07 E-value=0.0076 Score=56.86 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=36.7
Q ss_pred eeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCcccc-CCCCCcEEEccCCcCccc
Q 045237 455 LLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLC-NLLNLQTLDMPSSYIDHT 515 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~l 515 (758)
....+||++|.+..++. +..++.|..|.|++|+|+.+-+.+. .+++|++|.|.+|++.++
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL 103 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence 44566777766554432 4456667777777777776655553 355677777777766555
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.82 E-value=0.0042 Score=61.08 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=44.1
Q ss_pred hccCCeeEEEEcCCCC--CC-CCCccccCcccccEEeccCCCCcccC--ccccCCCCCcEEEccCCcCcccc----hhhc
Q 045237 450 CKKFKLLRVLNMGSLV--LD-QFPSGIENLFLLRCLKLDVPSLKSLP--SSLCNLLNLQTLDMPSSYIDHTP----EDIW 520 (758)
Q Consensus 450 ~~~l~~Lr~L~L~~~~--l~-~lp~~i~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp----~~i~ 520 (758)
|..+++|+.|.++.|. +. .++-...++++|++|++++|+|..+. ..+.++.+|..|++.+|....+- ..+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 4455666677776663 22 44444445567777777776655211 13345666666666666544441 1233
Q ss_pred ccccCcEEEcC
Q 045237 521 NMHKLMHLNFG 531 (758)
Q Consensus 521 ~l~~L~~L~l~ 531 (758)
-+++|++|+-.
T Consensus 141 ll~~L~~LD~~ 151 (260)
T KOG2739|consen 141 LLPSLKYLDGC 151 (260)
T ss_pred Hhhhhcccccc
Confidence 45556655443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.002 Score=63.48 Aligned_cols=98 Identities=22% Similarity=0.285 Sum_probs=74.0
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCc--cccCCCCCc
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPS--SLCNLLNLQ 503 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~ 503 (758)
.+++.|.+.++...+ ..++.+|+.|+||.|+-|.++++-. +..|++|+.|.|+.|.|.++-+ -+.+|++|+
T Consensus 19 ~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 456667777777654 3578899999999999999988743 7889999999999999886643 457899999
Q ss_pred EEEccCC-cCcccc-----hhhcccccCcEEEc
Q 045237 504 TLDMPSS-YIDHTP-----EDIWNMHKLMHLNF 530 (758)
Q Consensus 504 ~L~L~~~-~l~~lp-----~~i~~l~~L~~L~l 530 (758)
+|-|..| ....-+ .-+.-|++|+.||-
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 9999888 333332 22456788888753
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.33 E-value=0.0073 Score=35.50 Aligned_cols=17 Identities=47% Similarity=0.602 Sum_probs=7.3
Q ss_pred ccEEeccCCCCcccCcc
Q 045237 479 LRCLKLDVPSLKSLPSS 495 (758)
Q Consensus 479 Lr~L~L~~~~i~~lp~~ 495 (758)
|++|+|++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.31 E-value=0.0045 Score=60.82 Aligned_cols=84 Identities=23% Similarity=0.132 Sum_probs=46.7
Q ss_pred CCccEEEEeec--cCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceE----ECcccc
Q 045237 623 PSLTQLSLSNT--ELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWT----MGARAM 696 (758)
Q Consensus 623 ~~L~~L~L~~~--~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~----~~~~~l 696 (758)
++|++|.++.| +....++....++|+|++|++++|.+... ........+.+|..|++.+|+... +. ..+.-+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll 142 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLL 142 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcchhhhhcccCCccc-cccHHHHHHHHh
Confidence 67777777777 44444555555567777777777765421 111113456666777777765332 21 113345
Q ss_pred cccceeeEeccc
Q 045237 697 TKLESLIINPCA 708 (758)
Q Consensus 697 ~~L~~L~l~~c~ 708 (758)
|+|+.|+-..+.
T Consensus 143 ~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 143 PSLKYLDGCDVD 154 (260)
T ss_pred hhhccccccccC
Confidence 666666555444
No 70
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.21 E-value=0.42 Score=58.64 Aligned_cols=242 Identities=15% Similarity=0.107 Sum_probs=122.6
Q ss_pred cccCcceehHHHHHHHhCcccccccCCeeEEEEECC-CCCHHHHHHHHHHhhCCCCCC--cc--------ccCchhhhHH
Q 045237 119 SESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSI-QYNFKKILDDIIKSVMPASGL--SE--------IIGKDYTLKK 187 (758)
Q Consensus 119 ~~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~--~~--------~~~~~~~~~~ 187 (758)
++.|.+|++.+ ++.. . .++.++|+++.. +-+...+...++..+...... +. ...+.....
T Consensus 39 apaG~GKTtl~-~~~~-~------~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 109 (903)
T PRK04841 39 SPAGYGKTTLI-SQWA-A------GKNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLF- 109 (903)
T ss_pred CCCCCCHHHHH-HHHH-H------hCCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHH-
Confidence 34555666665 3323 2 234688999864 446677777777777431110 00 001222233
Q ss_pred HHHHHhcC--CCeEEEEEeCCCCh--hh-HHHHHhhCCCCCCCcEEEEEeCCccccC--ccc-------c---------c
Q 045237 188 SILRDYLT--NKKYMTVLDDIYHD--MI-WNDLREALPDYQNGSRVLITVVDPDILT--SFE-------L---------E 244 (758)
Q Consensus 188 ~~l~~~L~--~kr~LlVLDDvw~~--~~-w~~l~~~~~~~~~gS~iivTTR~~~vL~--~~~-------l---------~ 244 (758)
..+-..+. +.+++|||||+..- .. .+.+...+.....+-++|||||...-+. .+. + +
T Consensus 110 ~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~ 189 (903)
T PRK04841 110 AQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQ 189 (903)
T ss_pred HHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHH
Confidence 33333332 57899999999653 22 2333333344455778889999853221 111 1 1
Q ss_pred chhhhccccccccccccc-------cccccchhhhhhcc--ccc-------hhhhhhc-CCCchhHHHhhc-cCCcchhH
Q 045237 245 NGEKIGSDSVLVGGPLFR-------IKYEGWQFFLLYCG--CKS-------LESQMME-MENEPTALLFCS-IFELPLYL 306 (758)
Q Consensus 245 ~~~~i~~~i~~~g~~L~~-------~~~~~W~~~~~~~~--l~~-------l~~~~~~-~~~~i~~~L~~S-y~~L~~~~ 306 (758)
+...+.. ..+|..+.. .....|--...... +.. ..+.... +...+...+.-. |+.||++.
T Consensus 190 e~~~ll~--~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~ 267 (903)
T PRK04841 190 EAQQFFD--QRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLET 267 (903)
T ss_pred HHHHHHH--hccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHH
Confidence 1111110 111221110 01223333210000 000 0000100 112355554433 78999999
Q ss_pred HHHHhHhcccCCCceeeHhHHHHHHHHcCCCCCChHHHHHHHHHHHHhCccccccccCCCCCeeEEEcCHHHHHHHHHHh
Q 045237 307 KFCCFYLCVFYGNLEISTRQLYQLWMAEGFVAHNSEANAEEYLKELISRGLIKVGKRSAGGKIKTCSVPSSVWARLVVLA 386 (758)
Q Consensus 307 k~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~Lv~~sll~~~~~~~~~~~~~~~mHdli~dla~~i~ 386 (758)
+..+...|+++ .|+.+ +...-. | .+.+...+++|.+.++|...... .+ ..|+.|++++++.....
T Consensus 268 ~~~l~~~a~~~---~~~~~-l~~~l~--~------~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 268 RHFLLRCSVLR---SMNDA-LIVRVT--G------EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHhcccc---cCCHH-HHHHHc--C------CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 99999999987 34432 222211 1 22357889999999997532211 11 36889999999988765
No 71
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.18 E-value=0.027 Score=56.78 Aligned_cols=86 Identities=12% Similarity=-0.008 Sum_probs=53.4
Q ss_pred ccCcceehHHHHHHHhCcccccccCCeeEEEEECCC--CCHHHHHHHHHHhhCCCCC-Ccccc--CchhhhHHHHHHHh-
Q 045237 120 ESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSIQ--YNFKKILDDIIKSVMPASG-LSEII--GKDYTLKKSILRDY- 193 (758)
Q Consensus 120 ~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~-~~~~~--~~~~~~~~~~l~~~- 193 (758)
+.+++++++. +.+|++.... +|+.++||+++.+ +++.+++++|...+..... .+... .-..... .....+
T Consensus 24 ~~G~GKTTLl--r~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~-~~a~~~~ 99 (249)
T cd01128 24 PPKAGKTTLL--QSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL-EKAKRLV 99 (249)
T ss_pred CCCCCHHHHH--HHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH-HHHHHHH
Confidence 3456666665 9999965544 8999999998877 8999999999443332111 00000 0111122 222222
Q ss_pred cCCCeEEEEEeCCCCh
Q 045237 194 LTNKKYMTVLDDIYHD 209 (758)
Q Consensus 194 L~~kr~LlVLDDvw~~ 209 (758)
-.++++++++|++-..
T Consensus 100 ~~G~~vll~iDei~r~ 115 (249)
T cd01128 100 EHGKDVVILLDSITRL 115 (249)
T ss_pred HCCCCEEEEEECHHHh
Confidence 3589999999999653
No 72
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.16 E-value=0.1 Score=57.12 Aligned_cols=137 Identities=17% Similarity=0.177 Sum_probs=81.0
Q ss_pred eeecchhhHHHHHHHhcCCCCCC------CccccCcceehHHHHHHHhCcccccccCC--eeEEEEECCCCCHHHHHHHH
Q 045237 94 FVYESEKAIDTFFTTIMQPQSSE------SESESTSYKDALVGLQKAFNSNHVKFYFD--CRAWVRVSIQYNFKKILDDI 165 (758)
Q Consensus 94 ~v~Gr~~~~~~i~~~L~~~~~~~------~~~~~~~~~~~ivGa~~vy~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i 165 (758)
.++||+++++++...|....... -.++.|+++++++ +.++++ ...... ..++|......+...++.+|
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~--~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV--KKVFEE--LEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH--HHHHHH--HHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 35599999999999884421111 1234455555555 888874 333222 24455555556778899999
Q ss_pred HHhhCCCCCCccccCchhhhHHHHHHHhcC--CCeEEEEEeCCCChh------hHHHHHhhCCCCCCCcE--EEEEeCCc
Q 045237 166 IKSVMPASGLSEIIGKDYTLKKSILRDYLT--NKKYMTVLDDIYHDM------IWNDLREALPDYQNGSR--VLITVVDP 235 (758)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~~------~w~~l~~~~~~~~~gS~--iivTTR~~ 235 (758)
++++..... +....+..+.. ..+.+.+. ++.++||||+++... .+..+....... .+++ +|.+++..
T Consensus 107 ~~~l~~~~~-~~~~~~~~~~~-~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~ 183 (394)
T PRK00411 107 ARQLFGHPP-PSSGLSFDELF-DKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDL 183 (394)
T ss_pred HHHhcCCCC-CCCCCCHHHHH-HHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCc
Confidence 999976321 11122455666 66777665 456899999998642 344444333222 3444 66666665
Q ss_pred cc
Q 045237 236 DI 237 (758)
Q Consensus 236 ~v 237 (758)
.+
T Consensus 184 ~~ 185 (394)
T PRK00411 184 TF 185 (394)
T ss_pred ch
Confidence 44
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.09 E-value=0.0098 Score=34.94 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=18.5
Q ss_pred CCcEEEccCCcCcccchhhccc
Q 045237 501 NLQTLDMPSSYIDHTPEDIWNM 522 (758)
Q Consensus 501 ~L~~L~L~~~~l~~lp~~i~~l 522 (758)
+|++|||++|.++.+|.++.+|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 6899999999999999887654
No 74
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.81 E-value=0.041 Score=58.31 Aligned_cols=83 Identities=16% Similarity=0.020 Sum_probs=51.7
Q ss_pred cCcceehHHHHHHHhCcccccccCCeeEEEEECCCC--CHHHHHHHHHHhhCCCCC-Ccccc--C---chhhhHHHHHHH
Q 045237 121 STSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSIQY--NFKKILDDIIKSVMPASG-LSEII--G---KDYTLKKSILRD 192 (758)
Q Consensus 121 ~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~-~~~~~--~---~~~~~~~~~l~~ 192 (758)
.+++++++ |+.||++.... ||++++||.+++.+ ++.+++++|...+..... .+... . ..-+.+ +.++
T Consensus 178 pGvGKTTL--aK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A-e~~~- 252 (416)
T PRK09376 178 PKAGKTVL--LQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA-KRLV- 252 (416)
T ss_pred CCCChhHH--HHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH-HHHH-
Confidence 34444444 59999965544 89999999999998 888999998743322111 00000 0 111122 2222
Q ss_pred hcCCCeEEEEEeCCCCh
Q 045237 193 YLTNKKYMTVLDDIYHD 209 (758)
Q Consensus 193 ~L~~kr~LlVLDDvw~~ 209 (758)
-.+++++|++|++-.-
T Consensus 253 -e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 253 -EHGKDVVILLDSITRL 268 (416)
T ss_pred -HcCCCEEEEEEChHHH
Confidence 3679999999999653
No 75
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.005 Score=60.75 Aligned_cols=61 Identities=26% Similarity=0.293 Sum_probs=34.6
Q ss_pred CCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCccc
Q 045237 453 FKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHT 515 (758)
Q Consensus 453 l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l 515 (758)
+.+.+.|++.+|.++.+. .+.+++.|..|.|+-|+|+.|- .+..|++|+.|.|+.|.|..+
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccH
Confidence 344555666666655432 2345566666666666666553 455666666666666655544
No 76
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.17 E-value=1.1 Score=51.79 Aligned_cols=261 Identities=19% Similarity=0.127 Sum_probs=145.5
Q ss_pred HHHHHHHhcCCCCCC---CccccCcceehHHHHHHHhCcccccccCCeeEEEEECC-CCCHHHHHHHHHHhhCCCCC--C
Q 045237 102 IDTFFTTIMQPQSSE---SESESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSI-QYNFKKILDDIIKSVMPASG--L 175 (758)
Q Consensus 102 ~~~i~~~L~~~~~~~---~~~~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~--~ 175 (758)
+.++...|....... ..++.|.+|+++++ +..- ....=..++|..... +-|+.++...++..+..-.+ .
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~a-q~~~----~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~ 98 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLA-QWRE----LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLG 98 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHH-HHHH----hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCcccc
Confidence 345555554432211 23466788888884 2221 011123578999865 45788999999888874211 0
Q ss_pred cc--------ccCchhhhHHHHHHHhcCC--CeEEEEEeCCCC---hhhHHHHHhhCCCCCCCcEEEEEeCCccccCc--
Q 045237 176 SE--------IIGKDYTLKKSILRDYLTN--KKYMTVLDDIYH---DMIWNDLREALPDYQNGSRVLITVVDPDILTS-- 240 (758)
Q Consensus 176 ~~--------~~~~~~~~~~~~l~~~L~~--kr~LlVLDDvw~---~~~w~~l~~~~~~~~~gS~iivTTR~~~vL~~-- 240 (758)
+. ...+...+. ..+...+.. ++..+||||-.- ..--+.+..-+.....+=..|||||+.--+.-
T Consensus 99 ~~a~~l~q~~~~~~l~~l~-~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~ 177 (894)
T COG2909 99 DEAQTLLQKHQYVSLESLL-SSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLAR 177 (894)
T ss_pred HHHHHHHHhcccccHHHHH-HHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccc
Confidence 00 111344455 555555543 689999999643 32234444445556678899999999865221
Q ss_pred ccc-cchhhhcccc------------cccc-cccc-------ccccccchhhhhhccccchhhhhhcCCCchhHHHhhc-
Q 045237 241 FEL-ENGEKIGSDS------------VLVG-GPLF-------RIKYEGWQFFLLYCGCKSLESQMMEMENEPTALLFCS- 298 (758)
Q Consensus 241 ~~l-~~~~~i~~~i------------~~~g-~~L~-------~~~~~~W~~~~~~~~l~~l~~~~~~~~~~i~~~L~~S- 298 (758)
|.+ ..+-+|+.+- ..-| ..|- -...+.|....+...+.. . +.......+..+|
T Consensus 178 lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~---~--~~~~~~q~~~~LsG 252 (894)
T COG2909 178 LRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALAL---R--NNTSAEQSLRGLSG 252 (894)
T ss_pred eeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHc---c--CCCcHHHHhhhccc
Confidence 333 2222232222 1111 2221 112466766633211111 1 0001111111111
Q ss_pred -------------cCCcchhHHHHHhHhcccCCCceeeHhHHHHHHHHcCCCCCChHHHHHHHHHHHHhCccccccccCC
Q 045237 299 -------------IFELPLYLKFCCFYLCVFYGNLEISTRQLYQLWMAEGFVAHNSEANAEEYLKELISRGLIKVGKRSA 365 (758)
Q Consensus 299 -------------y~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~Lv~~sll~~~~~~~ 365 (758)
++.||+++|...+-||+++.- -++|+....+ ++.|...+++|..++||-..-.+.
T Consensus 253 ~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg--------~~ng~amLe~L~~~gLFl~~Ldd~ 320 (894)
T COG2909 253 AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALTG--------EENGQAMLEELERRGLFLQRLDDE 320 (894)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhc--------CCcHHHHHHHHHhCCCceeeecCC
Confidence 578999999999999998763 2455554433 345788999999999886543322
Q ss_pred CCCeeEEEcCHHHHHHHHHHhcc
Q 045237 366 GGKIKTCSVPSSVWARLVVLAAK 388 (758)
Q Consensus 366 ~~~~~~~~mHdli~dla~~i~~~ 388 (758)
. .+|+.|.+..|+-+.--..
T Consensus 321 ~---~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 321 G---QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred C---ceeehhHHHHHHHHhhhcc
Confidence 2 4899999999997765443
No 77
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.48 E-value=0.17 Score=54.65 Aligned_cols=110 Identities=11% Similarity=0.103 Sum_probs=65.8
Q ss_pred eecchhhHHHHHHHhcCCCCCC------CccccCcceehHHHHHHHhCcccccccCC------eeEEEEECCCCCHHHHH
Q 045237 95 VYESEKAIDTFFTTIMQPQSSE------SESESTSYKDALVGLQKAFNSNHVKFYFD------CRAWVRVSIQYNFKKIL 162 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~~------~~~~~~~~~~~ivGa~~vy~~~~~~~~F~------~~~wv~vs~~~~~~~i~ 162 (758)
+.||+++++++...|....... -.++.|+++++++ +.++++ .....+ ..+||......+...++
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~--~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT--KYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH--HHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 4599999999999986422111 1234555566665 888873 221111 23556555556778899
Q ss_pred HHHHHhhCC-CCCCccccCchhhhHHHHHHHhcC--CCeEEEEEeCCCCh
Q 045237 163 DDIIKSVMP-ASGLSEIIGKDYTLKKSILRDYLT--NKKYMTVLDDIYHD 209 (758)
Q Consensus 163 ~~i~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~ 209 (758)
.+|++++.. ....+....+..+.. ..+.+.+. +++++||||+++..
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVF-RRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHH-HHHHHHHHhcCCeEEEEECchhhh
Confidence 999999842 111111112334444 55555553 56899999999865
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.14 E-value=0.061 Score=29.28 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=5.9
Q ss_pred CCcEEEccCCcCcccc
Q 045237 501 NLQTLDMPSSYIDHTP 516 (758)
Q Consensus 501 ~L~~L~L~~~~l~~lp 516 (758)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555444443
No 79
>PF05729 NACHT: NACHT domain
Probab=92.99 E-value=0.51 Score=44.14 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=29.2
Q ss_pred CCCeEEEEEeCCCChhh---------HHHHHh-hCCC-CCCCcEEEEEeCCccc
Q 045237 195 TNKKYMTVLDDIYHDMI---------WNDLRE-ALPD-YQNGSRVLITVVDPDI 237 (758)
Q Consensus 195 ~~kr~LlVLDDvw~~~~---------w~~l~~-~~~~-~~~gS~iivTTR~~~v 237 (758)
..+++++|+|++++-.. +.++.. -++. ..++.++|||||....
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 57899999999986421 333332 2332 3568999999998854
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.58 E-value=0.076 Score=28.92 Aligned_cols=16 Identities=50% Similarity=0.600 Sum_probs=7.4
Q ss_pred cccEEeccCCCCcccC
Q 045237 478 LLRCLKLDVPSLKSLP 493 (758)
Q Consensus 478 ~Lr~L~L~~~~i~~lp 493 (758)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666665554
No 81
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.89 E-value=0.32 Score=43.58 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=57.4
Q ss_pred eeEEEEECCCCCHHHHHHHHHHhhCCCCCCccccCchhhhHHHHHHHhcCCC-eEEEEEeCCCCh---hhHHHHHhhCCC
Q 045237 146 CRAWVRVSIQYNFKKILDDIIKSVMPASGLSEIIGKDYTLKKSILRDYLTNK-KYMTVLDDIYHD---MIWNDLREALPD 221 (758)
Q Consensus 146 ~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDDvw~~---~~w~~l~~~~~~ 221 (758)
..+|+.+....+...+.++|+.+++.... ...+..++. +.+.+.+... ..+||+||+... ..++.+.....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~l~-~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~- 113 (131)
T PF13401_consen 39 DVIYVNCPSSRTPRDFAQEILEALGLPLK---SRQTSDELR-SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN- 113 (131)
T ss_dssp EEEEEEHHHHSSHHHHHHHHHHHHT-SSS---STS-HHHHH-HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC-
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCcccc---ccCCHHHHH-HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh-
Confidence 45688887777999999999999988654 223566677 7777777654 469999999764 34566655444
Q ss_pred CCCCcEEEEEeCC
Q 045237 222 YQNGSRVLITVVD 234 (758)
Q Consensus 222 ~~~gS~iivTTR~ 234 (758)
..+.+||++-+.
T Consensus 114 -~~~~~vvl~G~~ 125 (131)
T PF13401_consen 114 -ESNIKVVLVGTP 125 (131)
T ss_dssp -SCBEEEEEEESS
T ss_pred -CCCCeEEEEECh
Confidence 556777776554
No 82
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.67 E-value=1.2 Score=40.20 Aligned_cols=120 Identities=14% Similarity=0.020 Sum_probs=60.0
Q ss_pred cchhhHHHHHHHhcCCCCC--CCccccCcceehHHHHHHHhCcccccccCCeeEEEEECCCCCHHHHHHHHHHhhCCCCC
Q 045237 97 ESEKAIDTFFTTIMQPQSS--ESESESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSIQYNFKKILDDIIKSVMPASG 174 (758)
Q Consensus 97 Gr~~~~~~i~~~L~~~~~~--~~~~~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 174 (758)
|++..++.+...+...... --.++.|++++.++ +.+++. ....-...+++..+...........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~--~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLA--RAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHH--HHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 7888888888887552211 11223444555554 777763 22212234555544433322221111100
Q ss_pred CccccCchhhhHHHHHHHhcCCCeEEEEEeCCCCh-----hhHHHHHhhCCCC---CCCcEEEEEeCCcc
Q 045237 175 LSEIIGKDYTLKKSILRDYLTNKKYMTVLDDIYHD-----MIWNDLREALPDY---QNGSRVLITVVDPD 236 (758)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~-----~~w~~l~~~~~~~---~~gS~iivTTR~~~ 236 (758)
... .........++-+||+||++.. ..+..+....... ..+.+||+||....
T Consensus 72 ---------~~~-~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVR-LLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHh-HHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000 1122233456789999999964 2233333333222 36789999988763
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.50 E-value=0.0052 Score=59.02 Aligned_cols=85 Identities=16% Similarity=0.059 Sum_probs=66.7
Q ss_pred HhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEE
Q 045237 449 ICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHL 528 (758)
Q Consensus 449 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 528 (758)
-+..++...+||++.+.+..+-..++.+..|..|+++.+.+..+|..++.+..+..+++..|....+|.++++++.++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 34566777888888887777766777777888888888888888888888888888888888888888888888888888
Q ss_pred EcCCC
Q 045237 529 NFGCI 533 (758)
Q Consensus 529 ~l~~~ 533 (758)
+....
T Consensus 117 e~k~~ 121 (326)
T KOG0473|consen 117 EQKKT 121 (326)
T ss_pred hhccC
Confidence 77653
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.25 E-value=0.019 Score=54.23 Aligned_cols=62 Identities=18% Similarity=0.338 Sum_probs=29.5
Q ss_pred CCccccEEeeccCCCcCceEE--CcccccccceeeEeccccCCCCc-hhhcCCCCCcEEEEecCc
Q 045237 671 GFPKLKILHLKSMFWLEEWTM--GARAMTKLESLIINPCAYLKKLP-EELWRIESFRKLELHWPQ 732 (758)
Q Consensus 671 ~~~~L~~L~L~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~sL~~L~l~~c~ 732 (758)
.+++++.|.+.+|..+..|.- .-+..|+|+.|+|++|+.+++-- ..+..+++|+.|.+.+-|
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 344445555555554443311 11234556666666665554321 244455555555555544
No 85
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.71 E-value=0.68 Score=49.54 Aligned_cols=77 Identities=12% Similarity=-0.008 Sum_probs=47.6
Q ss_pred HHHHhCcccccccCCeeEEEEECCC--CCHHHHHHHHHHhhCCCCC-CccccC-ch-hhhHHHHHHHh-cCCCeEEEEEe
Q 045237 131 LQKAFNSNHVKFYFDCRAWVRVSIQ--YNFKKILDDIIKSVMPASG-LSEIIG-KD-YTLKKSILRDY-LTNKKYMTVLD 204 (758)
Q Consensus 131 a~~vy~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~-~~~~~~-~~-~~~~~~~l~~~-L~~kr~LlVLD 204 (758)
++++++..... ||+..+||.++++ .++.++++.|...+..... .+.... .. .... +..... -.+++++|++|
T Consensus 185 ~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~-e~Ae~~~~~GkdVVLlID 262 (415)
T TIGR00767 185 LQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI-EKAKRLVEHKKDVVILLD 262 (415)
T ss_pred HHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH-HHHHHHHHcCCCeEEEEE
Confidence 58888853333 7999999999866 7999999999655443221 000000 11 1112 222222 36899999999
Q ss_pred CCCCh
Q 045237 205 DIYHD 209 (758)
Q Consensus 205 Dvw~~ 209 (758)
++-.-
T Consensus 263 EitR~ 267 (415)
T TIGR00767 263 SITRL 267 (415)
T ss_pred ChhHH
Confidence 99654
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.73 E-value=0.025 Score=53.48 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=65.6
Q ss_pred CCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCc-eeEEeCCCCCccccEEeeccCCCcCce-EECcccccccc
Q 045237 623 PSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGR-KLACVGSGGFPKLKILHLKSMFWLEEW-TMGARAMTKLE 700 (758)
Q Consensus 623 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~ 700 (758)
..++.++-+++.+.......+.+++.++.|.+.+|...+. -+... .+.+++|+.|+|++|+.+++- -..+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4678888888887777777888899999999988764332 22222 346799999999999988743 23467889999
Q ss_pred eeeEeccccCC
Q 045237 701 SLIINPCAYLK 711 (758)
Q Consensus 701 ~L~l~~c~~l~ 711 (758)
.|.|.+-+...
T Consensus 180 ~L~l~~l~~v~ 190 (221)
T KOG3864|consen 180 RLHLYDLPYVA 190 (221)
T ss_pred HHHhcCchhhh
Confidence 99988766543
No 87
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=1.3 Score=47.39 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=69.0
Q ss_pred eecchhhHHHHHHHhcCCCCCCCc------cccCcceehHHHHHHHhCcccccccCCe--eEEEEECCCCCHHHHHHHHH
Q 045237 95 VYESEKAIDTFFTTIMQPQSSESE------SESTSYKDALVGLQKAFNSNHVKFYFDC--RAWVRVSIQYNFKKILDDII 166 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~~~~------~~~~~~~~~ivGa~~vy~~~~~~~~F~~--~~wv~vs~~~~~~~i~~~i~ 166 (758)
+-+||++.+++...|...-..+.. +..|.+++..+ +.|.. +++..-.. .++|..-......++..+|+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~--~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATV--KFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH--HHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 449999999999887643332211 12333444444 77776 44443221 57777777788999999999
Q ss_pred HhhCCCCCCccccCchhhhHHHHHHHhcC--CCeEEEEEeCCCCh
Q 045237 167 KSVMPASGLSEIIGKDYTLKKSILRDYLT--NKKYMTVLDDIYHD 209 (758)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~ 209 (758)
++++.... ......+.. ..+.+.+. ++.++||||++...
T Consensus 95 ~~~~~~p~---~g~~~~~~~-~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 95 NKLGKVPL---TGDSSLEIL-KRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHcCCCCC---CCCchHHHH-HHHHHHHHhcCCeEEEEEcchhhh
Confidence 99973221 222444555 56666664 58899999999865
No 88
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.79 E-value=0.67 Score=41.33 Aligned_cols=81 Identities=14% Similarity=0.265 Sum_probs=33.7
Q ss_pred HHhccCCeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccCcc-ccCCCCCcEEEccCCcCcccchh-hccccc
Q 045237 448 NICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLPSS-LCNLLNLQTLDMPSSYIDHTPED-IWNMHK 524 (758)
Q Consensus 448 ~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~ 524 (758)
..|.+++.|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..++.. +.++.+|+.+.+.. .+..++.. +..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455555666666653 344333 33455556666666553 4444432 34555566666644 34444333 334555
Q ss_pred CcEEEcC
Q 045237 525 LMHLNFG 531 (758)
Q Consensus 525 L~~L~l~ 531 (758)
|+.+.+.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 5555553
No 89
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.57 E-value=0.41 Score=29.22 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=13.2
Q ss_pred CCCCcEEEccCCcCcccchhh
Q 045237 499 LLNLQTLDMPSSYIDHTPEDI 519 (758)
Q Consensus 499 L~~L~~L~L~~~~l~~lp~~i 519 (758)
|++|++|+|++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356666666666666666553
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.57 E-value=0.41 Score=29.22 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=13.2
Q ss_pred CCCCcEEEccCCcCcccchhh
Q 045237 499 LLNLQTLDMPSSYIDHTPEDI 519 (758)
Q Consensus 499 L~~L~~L~L~~~~l~~lp~~i 519 (758)
|++|++|+|++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356666666666666666553
No 91
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.95 E-value=4.4 Score=41.50 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=51.7
Q ss_pred cccCcceehHHHHHHHhCcccccccCCeeEEEEECCCCCHHHHHHHHHHhhCCCCCCccccCchhhhH---HHHHHHh-c
Q 045237 119 SESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSIQYNFKKILDDIIKSVMPASGLSEIIGKDYTLK---KSILRDY-L 194 (758)
Q Consensus 119 ~~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~---~~~l~~~-L 194 (758)
++.|+++++++ +.+++..... .+ ..+|+ +....+..++++.|...++.+.. + .+..... ...+... .
T Consensus 50 G~~G~GKTtl~--~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~-~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 50 GEVGAGKTTLI--RNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---G-RDKAALLRELEDFLIEQFA 120 (269)
T ss_pred cCCCCCHHHHH--HHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---C-CCHHHHHHHHHHHHHHHHh
Confidence 34556666665 8888743311 11 12233 33456788899999988866432 1 1222222 0223332 3
Q ss_pred CCCeEEEEEeCCCCh--hhHHHHHh
Q 045237 195 TNKKYMTVLDDIYHD--MIWNDLRE 217 (758)
Q Consensus 195 ~~kr~LlVLDDvw~~--~~w~~l~~ 217 (758)
.+++++||+||++.. ..++.+..
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHH
Confidence 678899999999975 35666654
No 92
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.89 E-value=0.84 Score=40.69 Aligned_cols=97 Identities=23% Similarity=0.260 Sum_probs=50.8
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccCcc-ccCCCCCc
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLPSS-LCNLLNLQ 503 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~ 503 (758)
.+++.+.+... .. .+....|..++.|+.+.+.++ +..++ ..+.++..|+.+.+.. .+..++.. +..+++|+
T Consensus 12 ~~l~~i~~~~~-~~----~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 12 SNLESITFPNT-IK----KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TT--EEEETST-------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCEEEECCC-ee----EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 35666665432 11 444567788878888888774 65554 3466777888888865 55555443 45688888
Q ss_pred EEEccCCcCcccchh-hcccccCcEEEcC
Q 045237 504 TLDMPSSYIDHTPED-IWNMHKLMHLNFG 531 (758)
Q Consensus 504 ~L~L~~~~l~~lp~~-i~~l~~L~~L~l~ 531 (758)
.+++..+ +..++.. +.+. +|+.+.+.
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 8888664 5566544 4454 77776654
No 93
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.69 E-value=6 Score=41.66 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=71.5
Q ss_pred eecchhhHHHHHHHhcCCCCCC---CccccCcceehHHH--HHHHhCcccccccCCeeEEEE-ECCCCCHHHHHHHHHHh
Q 045237 95 VYESEKAIDTFFTTIMQPQSSE---SESESTSYKDALVG--LQKAFNSNHVKFYFDCRAWVR-VSIQYNFKKILDDIIKS 168 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~~---~~~~~~~~~~~ivG--a~~vy~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~ 168 (758)
++|-+.-++.+...+.+..-.. -.++.|+++.+.+- |+.++.......|+|...|.. -+....+.+|. ++.+.
T Consensus 6 i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~~~ 84 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NIIEE 84 (313)
T ss_pred ccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHHHH
Confidence 4588888888888885532211 11334444444443 565554333456778766655 23334444432 33333
Q ss_pred hCCCCCCccccCchhhhHHHHHHHhcCCCeEEEEEe-CCCChhhHHHHHhhCCCCCCCcEEEEEeCCccc
Q 045237 169 VMPASGLSEIIGKDYTLKKSILRDYLTNKKYMTVLD-DIYHDMIWNDLREALPDYQNGSRVLITVVDPDI 237 (758)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLD-Dvw~~~~w~~l~~~~~~~~~gS~iivTTR~~~v 237 (758)
+.... ...++|+.||=| |..+...++.+...+..-.+++.+|++|.+.+.
T Consensus 85 ~~~~p-------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ 135 (313)
T PRK05564 85 VNKKP-------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQ 135 (313)
T ss_pred HhcCc-------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 32211 113456655555 555667899999999887789999999876643
No 94
>PF13173 AAA_14: AAA domain
Probab=87.62 E-value=0.93 Score=40.60 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=38.9
Q ss_pred HHHHHhcCCCeEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCCccc
Q 045237 188 SILRDYLTNKKYMTVLDDIYHDMIWNDLREALPDYQNGSRVLITVVDPDI 237 (758)
Q Consensus 188 ~~l~~~L~~kr~LlVLDDvw~~~~w~~l~~~~~~~~~gS~iivTTR~~~v 237 (758)
+.+.+....++.+|+||+|....+|......+.+..+..+|++|+.+...
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSL 101 (128)
T ss_pred HHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHH
Confidence 34444444578899999999988898888877766677899999888765
No 95
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.78 E-value=0.66 Score=28.30 Aligned_cols=21 Identities=43% Similarity=0.422 Sum_probs=15.7
Q ss_pred cccccEEeccCCCCcccCccc
Q 045237 476 LFLLRCLKLDVPSLKSLPSSL 496 (758)
Q Consensus 476 l~~Lr~L~L~~~~i~~lp~~i 496 (758)
|++|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887654
No 96
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.78 E-value=0.66 Score=28.30 Aligned_cols=21 Identities=43% Similarity=0.422 Sum_probs=15.7
Q ss_pred cccccEEeccCCCCcccCccc
Q 045237 476 LFLLRCLKLDVPSLKSLPSSL 496 (758)
Q Consensus 476 l~~Lr~L~L~~~~i~~lp~~i 496 (758)
|++|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887654
No 97
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=83.90 E-value=3 Score=43.81 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=65.9
Q ss_pred ceeecchhhHHHHHHHhcCCCCCCC-----ccccCcceehHHHHHHHhCcccccccCCeeEEEEECCCCCHHHHHHHHHH
Q 045237 93 YFVYESEKAIDTFFTTIMQPQSSES-----ESESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSIQYNFKKILDDIIK 167 (758)
Q Consensus 93 ~~v~Gr~~~~~~i~~~L~~~~~~~~-----~~~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 167 (758)
+.|.+|+.....+..++......-. -+..+.+++.++ +.+++.... ..+|+++-..|+.+-+...|+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~--r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLV--RQLLRKLNL-----ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHH--HHHHhhcCC-----cceeeehHHhccHHHHHHHHHH
Confidence 4567999999999888854322100 012233444444 778774421 3589999999999999999999
Q ss_pred hhCC-CCC-Ccccc--CchhhhHHHHHHH--hcC--CCeEEEEEeCCCCh
Q 045237 168 SVMP-ASG-LSEII--GKDYTLKKSILRD--YLT--NKKYMTVLDDIYHD 209 (758)
Q Consensus 168 ~l~~-~~~-~~~~~--~~~~~~~~~~l~~--~L~--~kr~LlVLDDvw~~ 209 (758)
++.. +.. ..... ....... ..+.+ ... ++.++||||++..-
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i-~~l~q~~~~t~~d~~~~liLDnad~l 127 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFI-YLLVQWPAATNRDQKVFLILDNADAL 127 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHH-HHHHhhHHhhccCceEEEEEcCHHhh
Confidence 9952 221 10001 1222233 33333 222 46899999999764
No 98
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.91 E-value=4.4 Score=43.82 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=58.9
Q ss_pred eeecchhhHHHHHHHhcCCCCCCCccccCcceehHHH------HHHHhCcccccccCCeeEEEEECCCCCHHHHHHHHHH
Q 045237 94 FVYESEKAIDTFFTTIMQPQSSESESESTSYKDALVG------LQKAFNSNHVKFYFDCRAWVRVSIQYNFKKILDDIIK 167 (758)
Q Consensus 94 ~v~Gr~~~~~~i~~~L~~~~~~~~~~~~~~~~~~ivG------a~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 167 (758)
-+.||+.+++.+.+++...-... ..+.+||-|=-| ...|+.+..-...=-+++++....--....+++.|.+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~--t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELN--TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcc--cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 35599999999999987543221 122344443333 3556653221111113345533322346678888888
Q ss_pred hhCCCCCCccccCchhhhHHHHHHHhcCCC--eEEEEEeCCCC
Q 045237 168 SVMPASGLSEIIGKDYTLKKSILRDYLTNK--KYMTVLDDIYH 208 (758)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDDvw~ 208 (758)
.+..... ......+.+ +.+.+..++. -|++|||..+.
T Consensus 229 ~~~q~~~---s~~~~~~~~-~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 229 SLLQDLV---SPGTGMQHL-EKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHHHHhc---CCchhHHHH-HHHHHHHhcccceEEEEechhhH
Confidence 8733211 011224445 5666666553 49999998864
No 99
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=78.53 E-value=11 Score=41.19 Aligned_cols=117 Identities=10% Similarity=0.142 Sum_probs=66.9
Q ss_pred eecchhhHHHHHHHhcCCCCCCCccccCcceehHHHHHHHhCcccccccCCeeEEEEECCCCCHHHHHHHHHHhhCCCCC
Q 045237 95 VYESEKAIDTFFTTIMQPQSSESESESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSIQYNFKKILDDIIKSVMPASG 174 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~~~~~~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 174 (758)
+++.++..+.+...|......--.++.|++++.++ +.+.+......+|+.+.||++++.++...+...+.- . .
T Consensus 177 ~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA--~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP----~-~ 249 (459)
T PRK11331 177 LFIPETTIETILKRLTIKKNIILQGPPGVGKTFVA--RRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP----N-G 249 (459)
T ss_pred ccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH--HHHHHHhcCCcccceeeEEeecccccHHHHhcccCC----C-C
Confidence 56889999999999875433222334455555554 777774444457888999999999887766542210 0 0
Q ss_pred CccccCchhhhHHHHHHHhcC--CCeEEEEEeCCCChh---hHHHHHhhCC
Q 045237 175 LSEIIGKDYTLKKSILRDYLT--NKKYMTVLDDIYHDM---IWNDLREALP 220 (758)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~~---~w~~l~~~~~ 220 (758)
. +..-......+.+++.-. ++++.||+|++.... -+.++...+.
T Consensus 250 v--gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 250 V--GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred C--CeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 0 111111111022222222 478999999998652 2445444443
No 100
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.24 E-value=0.12 Score=50.06 Aligned_cols=66 Identities=8% Similarity=-0.049 Sum_probs=58.2
Q ss_pred HHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcC
Q 045237 447 ENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYI 512 (758)
Q Consensus 447 ~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l 512 (758)
..-|+.++.|..||++.+.+..+|..++.+..++.+++..|..+.+|.+.+++++++++++.+|.+
T Consensus 58 ~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 58 GKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 345666778888999999999999999999999999999999999999999999999999999854
No 101
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.19 E-value=11 Score=44.47 Aligned_cols=112 Identities=9% Similarity=0.029 Sum_probs=59.1
Q ss_pred eeecchhhHHHHHHHhcCCCCCCCccccCcce--ehHHH----HHHHhCccc--c-cccCCe--eEEEEECCCCCHHHHH
Q 045237 94 FVYESEKAIDTFFTTIMQPQSSESESESTSYK--DALVG----LQKAFNSNH--V-KFYFDC--RAWVRVSIQYNFKKIL 162 (758)
Q Consensus 94 ~v~Gr~~~~~~i~~~L~~~~~~~~~~~~~~~~--~~ivG----a~~vy~~~~--~-~~~F~~--~~wv~vs~~~~~~~i~ 162 (758)
.+.|||+++++|...|...-... .+...+++ .+..| ++.|.+..+ . +..... .++|....-.+...+.
T Consensus 756 ~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 34599999999999886432111 11111122 22333 477765311 1 112222 3444444556788889
Q ss_pred HHHHHhhCCCCCCccccCchhhhHHHHHHHhc-C--CCeEEEEEeCCCCh
Q 045237 163 DDIIKSVMPASGLSEIIGKDYTLKKSILRDYL-T--NKKYMTVLDDIYHD 209 (758)
Q Consensus 163 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~--~kr~LlVLDDvw~~ 209 (758)
..|++++....+ +.+. ...+.. ..+.+.+ . +...+||||+|...
T Consensus 835 qvI~qqL~g~~P-~~Gl-sS~evL-erLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 835 QVLYKQLFNKKP-PNAL-NSFKIL-DRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHcCCCC-Cccc-cHHHHH-HHHHhhhhcccccceEEEeehHhhh
Confidence 999999855332 1121 233344 4444444 2 22468999999854
No 102
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=74.20 E-value=40 Score=39.18 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=39.1
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEE--EeCCcc
Q 045237 185 LKKSILRDYLTNKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLI--TVVDPD 236 (758)
Q Consensus 185 ~~~~~l~~~L~~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iiv--TTR~~~ 236 (758)
.+ ..+.+.+++++++++.|+.|.. ..|+.+...+....+...|+| ||++..
T Consensus 281 ~Q-~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~ 335 (615)
T TIGR02903 281 LQ-NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE 335 (615)
T ss_pred HH-HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc
Confidence 45 7889999999999998887765 458888887777776666666 666553
No 103
>PRK06893 DNA replication initiation factor; Validated
Probab=72.21 E-value=4.3 Score=40.56 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=22.3
Q ss_pred EEEEEeCCCCh---hhHH-HHHhhCCC-CCCCcEEEEEeCCc
Q 045237 199 YMTVLDDIYHD---MIWN-DLREALPD-YQNGSRVLITVVDP 235 (758)
Q Consensus 199 ~LlVLDDvw~~---~~w~-~l~~~~~~-~~~gS~iivTTR~~ 235 (758)
-+|||||+|.. .+|+ .+...+.. ...|+.+||||.+.
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 48999999973 4565 33333332 23467776666554
No 104
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=72.08 E-value=17 Score=38.06 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=40.7
Q ss_pred hhHHHhhccCCcchhHHHHHh-HhcccCCCceeeHhHHHHHHHHcCCCCCChHHHHHHHHH-HHHhCcccccc
Q 045237 291 PTALLFCSIFELPLYLKFCCF-YLCVFYGNLEISTRQLYQLWMAEGFVAHNSEANAEEYLK-ELISRGLIKVG 361 (758)
Q Consensus 291 i~~~L~~Sy~~L~~~~k~cFl-~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~-~Lv~~sll~~~ 361 (758)
....+..+|..|+.+.+..+. ..+.+..+ .+.-+.+.... ......++..++ .|++++|++..
T Consensus 225 ~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-------g~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 225 ALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-------GEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-------CCCcchHHHhhhHHHHHcCCcccC
Confidence 444467788899998877665 66777544 45544444332 233445667778 69999999743
No 105
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=71.31 E-value=5.3 Score=39.55 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=24.6
Q ss_pred ecchhhHHHHHHHhcCCCCC--CCccccCcceehHHHHHHHhC
Q 045237 96 YESEKAIDTFFTTIMQPQSS--ESESESTSYKDALVGLQKAFN 136 (758)
Q Consensus 96 ~Gr~~~~~~i~~~L~~~~~~--~~~~~~~~~~~~ivGa~~vy~ 136 (758)
|||++++++|.+.+...... --.++.++++++++ +.+.+
T Consensus 2 ~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl--~~~~~ 42 (234)
T PF01637_consen 2 FGREKELEKLKELLESGPSQHILLYGPRGSGKTSLL--KEFIN 42 (234)
T ss_dssp -S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHH--HHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHH--HHHHH
Confidence 59999999999998653211 11245667777776 77776
No 106
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=68.54 E-value=0.1 Score=57.83 Aligned_cols=161 Identities=20% Similarity=0.156 Sum_probs=80.4
Q ss_pred hhhHHHhccCCeeEEEEcCCCCCCC-----CCccccCc-ccccEEeccCCCCc-----ccCccccCCCCCcEEEccCCcC
Q 045237 444 LDCENICKKFKLLRVLNMGSLVLDQ-----FPSGIENL-FLLRCLKLDVPSLK-----SLPSSLCNLLNLQTLDMPSSYI 512 (758)
Q Consensus 444 ~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~~l-~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l 512 (758)
..+...+.....|..|++++|.+.. +-..+... ..|++|.+..|.++ .+...+....+|+.++++.|.+
T Consensus 105 ~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 105 EELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 4555666777777778888777651 11122222 45666777776655 3455566677777777777754
Q ss_pred cc-----cchhhc----ccccCcEEEcCCCCCCCCC-------CCcccc-CcccccccccCCCC---CCccccCCC-CCC
Q 045237 513 DH-----TPEDIW----NMHKLMHLNFGCITLPAPP-------ENYCSS-LKNLIFISALHPCS---CTPDTLGRL-PNV 571 (758)
Q Consensus 513 ~~-----lp~~i~----~l~~L~~L~l~~~~~~~~~-------~~~l~~-L~~L~l~~~~~~~~---~~~~~l~~l-~~L 571 (758)
.. ++..+. ...++++|++.+....+.. +...++ +..|++..+..... ...+.+..+ ..+
T Consensus 185 ~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l 264 (478)
T KOG4308|consen 185 IELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETL 264 (478)
T ss_pred chhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhh
Confidence 21 122222 3455566655542111111 112222 33344333332210 112233334 455
Q ss_pred CeEEEEecC--chhhhhHHHHhhccCCCceEEeee
Q 045237 572 QTLKIYGDL--SSYQSGLSKSLRELLKLESLKLVN 604 (758)
Q Consensus 572 ~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~L~~ 604 (758)
+.+++..|+ ......+...+..+..++.|.+..
T Consensus 265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred hhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence 666666654 223334455555556666666665
No 107
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=66.17 E-value=5.5 Score=37.91 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=22.0
Q ss_pred ecchhhHHHHHHHhcCCCCCC------CccccCcceehHHHHHHHhC
Q 045237 96 YESEKAIDTFFTTIMQPQSSE------SESESTSYKDALVGLQKAFN 136 (758)
Q Consensus 96 ~Gr~~~~~~i~~~L~~~~~~~------~~~~~~~~~~~ivGa~~vy~ 136 (758)
+||+++.+++...|. ....+ -.+..|++|++++ +.++.
T Consensus 3 vgR~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll--~~~~~ 46 (185)
T PF13191_consen 3 VGREEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLL--RALLD 46 (185)
T ss_dssp TT-HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHH--HHHHH
T ss_pred CCHHHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHH--HHHHH
Confidence 499999999999994 21111 1133455555555 66666
No 108
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.76 E-value=3.9 Score=25.04 Aligned_cols=17 Identities=35% Similarity=0.469 Sum_probs=9.5
Q ss_pred cccEEeccCCCCcccCc
Q 045237 478 LLRCLKLDVPSLKSLPS 494 (758)
Q Consensus 478 ~Lr~L~L~~~~i~~lp~ 494 (758)
+|++|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555553
No 109
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=64.70 E-value=3.3 Score=25.20 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=9.3
Q ss_pred ccccceeeEeccccCC
Q 045237 696 MTKLESLIINPCAYLK 711 (758)
Q Consensus 696 l~~L~~L~l~~c~~l~ 711 (758)
+|+|++|+|.+|+.++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3556666666666554
No 110
>PRK08116 hypothetical protein; Validated
Probab=61.92 E-value=15 Score=37.57 Aligned_cols=86 Identities=17% Similarity=0.233 Sum_probs=44.4
Q ss_pred HHHHhCcccccccCCeeEEEEECCCCCHHHHHHHHHHhhCCCCCCccccCchhhhHHHHHHHhcCCCeEEEEEeCCCC--
Q 045237 131 LQKAFNSNHVKFYFDCRAWVRVSIQYNFKKILDDIIKSVMPASGLSEIIGKDYTLKKSILRDYLTNKKYMTVLDDIYH-- 208 (758)
Q Consensus 131 a~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~-- 208 (758)
|.+|++ .+..+--.++|++ ..+++..|......... .+. ..+.+.+.+-. ||||||+..
T Consensus 131 a~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~-----~~~~~~l~~~d-lLviDDlg~e~ 191 (268)
T PRK08116 131 AACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSGK-----EDE-----NEIIRSLVNAD-LLILDDLGAER 191 (268)
T ss_pred HHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhcccc-----ccH-----HHHHHHhcCCC-EEEEecccCCC
Confidence 688888 4443323345553 45566666555432211 011 23344455444 899999943
Q ss_pred hhhHH--HHHhhCCC-CCCCcEEEEEeCCc
Q 045237 209 DMIWN--DLREALPD-YQNGSRVLITVVDP 235 (758)
Q Consensus 209 ~~~w~--~l~~~~~~-~~~gS~iivTTR~~ 235 (758)
..+|. .+..-+.. ...|..+||||...
T Consensus 192 ~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 192 DTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 23442 23322221 23567799998765
No 111
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=60.22 E-value=96 Score=32.78 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=44.1
Q ss_pred chhHHHhhccCCcchhHHHHHh-HhcccCCCceeeHhHHHHHHHHcCCCCCChHHHHHHHHH-HHHhCccccccc
Q 045237 290 EPTALLFCSIFELPLYLKFCCF-YLCVFYGNLEISTRQLYQLWMAEGFVAHNSEANAEEYLK-ELISRGLIKVGK 362 (758)
Q Consensus 290 ~i~~~L~~Sy~~L~~~~k~cFl-~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~-~Lv~~sll~~~~ 362 (758)
.....+...|..|++..+..+. ....|+.+ .+..+.+.... ....+.++..++ .|++.+|++...
T Consensus 245 ~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-------g~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 245 KALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-------GEERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-------CCCcchHHHHhhHHHHHcCCcccCC
Confidence 4445567788899988888775 66777766 56766654443 233445666677 899999997443
No 112
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.57 E-value=7.6 Score=23.83 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=11.5
Q ss_pred CCCCcEEEccCCcCccc
Q 045237 499 LLNLQTLDMPSSYIDHT 515 (758)
Q Consensus 499 L~~L~~L~L~~~~l~~l 515 (758)
|.+|+.|++++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45777777777766543
No 113
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.18 E-value=6.2 Score=23.38 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=8.8
Q ss_pred CCCCcEEEccCCcCc
Q 045237 499 LLNLQTLDMPSSYID 513 (758)
Q Consensus 499 L~~L~~L~L~~~~l~ 513 (758)
+++|++|+|++|.+.
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 367788888887664
No 114
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=54.90 E-value=1.1e+02 Score=28.57 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=32.1
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCccc
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPDI 237 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~v 237 (758)
+++=.+|+||+... ..++.|...+-.-..++++|++|++.+-
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 34557899999875 5688888887776778999999988764
No 115
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=53.35 E-value=49 Score=35.00 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=25.1
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCc
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
..+-+||+||+... ...+.+...+......+++|+||...
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 34458999999754 33455555554444567788887543
No 116
>PTZ00202 tuzin; Provisional
Probab=51.34 E-value=85 Score=34.53 Aligned_cols=76 Identities=14% Similarity=0.036 Sum_probs=42.8
Q ss_pred cccccccceeecchhhHHHHHHHhcCCCCCCC-----ccccCcceehHHHHHHHhCcccccccCCeeEEEEECCCCCHHH
Q 045237 86 SILNDINYFVYESEKAIDTFFTTIMQPQSSES-----ESESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSIQYNFKK 160 (758)
Q Consensus 86 s~~~~~~~~v~Gr~~~~~~i~~~L~~~~~~~~-----~~~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~ 160 (758)
+.+.+...++ ||+.+...+...|.+...... .+..|++++++ ++.+... .. ..+++. +..+..+
T Consensus 256 ~lPa~~~~FV-GReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTL--lR~~~~~--l~----~~qL~v--Nprg~eE 324 (550)
T PTZ00202 256 SAPAVIRQFV-SREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSL--CRSAVRK--EG----MPAVFV--DVRGTED 324 (550)
T ss_pred CCCCCccCCC-CcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHH--HHHHHhc--CC----ceEEEE--CCCCHHH
Confidence 3444554555 999999999998865332110 01122222222 3666542 21 113222 2227799
Q ss_pred HHHHHHHhhCCC
Q 045237 161 ILDDIIKSVMPA 172 (758)
Q Consensus 161 i~~~i~~~l~~~ 172 (758)
+++.|+.+++.+
T Consensus 325 lLr~LL~ALGV~ 336 (550)
T PTZ00202 325 TLRSVVKALGVP 336 (550)
T ss_pred HHHHHHHHcCCC
Confidence 999999999974
No 117
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.00 E-value=91 Score=34.24 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEE
Q 045237 195 TNKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLIT 231 (758)
Q Consensus 195 ~~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivT 231 (758)
.+++.+|++|+++.. .+.+.+...+. .|+.++|.
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~ 125 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIG 125 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEE
Confidence 467889999999865 45666665544 25555553
No 118
>PRK04195 replication factor C large subunit; Provisional
Probab=42.20 E-value=78 Score=35.60 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=56.2
Q ss_pred eecchhhHHHHHHHhcCCCC---CC---CccccCcceehHHHHHHHhCcccccccCCeeEEEEECCCCCHHHHHHHHHHh
Q 045237 95 VYESEKAIDTFFTTIMQPQS---SE---SESESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSIQYNFKKILDDIIKS 168 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~---~~---~~~~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 168 (758)
++|.++.++.+.+|+..-.. .. -.++.|+++++++ +++.++ .. |+. +-+..|...+.. ....++..
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla--~ala~e--l~--~~~-ielnasd~r~~~-~i~~~i~~ 87 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA--HALAND--YG--WEV-IELNASDQRTAD-VIERVAGE 87 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH--HHHHHH--cC--CCE-EEEcccccccHH-HHHHHHHH
Confidence 55999999999998853221 00 1223444455544 777773 21 222 222333322222 22233322
Q ss_pred hCCCCCCccccCchhhhHHHHHHHhcCCCeEEEEEeCCCChh------hHHHHHhhCCCCCCCcEEEEEeCCc
Q 045237 169 VMPASGLSEIIGKDYTLKKSILRDYLTNKKYMTVLDDIYHDM------IWNDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~~------~w~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
...... ....++-+||+|+++... .++.+...+.. .+..||+||.+.
T Consensus 88 ~~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~ 140 (482)
T PRK04195 88 AATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDP 140 (482)
T ss_pred hhccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCc
Confidence 211110 111367799999998642 25566555542 345566676543
No 119
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=41.95 E-value=1.9e+02 Score=34.22 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=31.3
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCccc
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPDI 237 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~v 237 (758)
++.-++|||++... ..|+.|...+..-....++|+||++.+-
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 44557889999876 4588888877666667888888887654
No 120
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=38.47 E-value=93 Score=33.48 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=13.1
Q ss_pred eecchhhHHHHHHHhc
Q 045237 95 VYESEKAIDTFFTTIM 110 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~ 110 (758)
+.|+++.++++.+.+.
T Consensus 124 i~Gl~~~~~~l~~~i~ 139 (364)
T TIGR01242 124 IGGLEEQIREIREAVE 139 (364)
T ss_pred hCChHHHHHHHHHHHH
Confidence 4599999999988764
No 121
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=38.21 E-value=1.7e+02 Score=30.37 Aligned_cols=60 Identities=10% Similarity=0.110 Sum_probs=41.5
Q ss_pred eeEEEEECCCCCHHHHHHHHHHhhCCCCCCccccCchhhhHHHHHHHhcCC-CeEEEEEeCCCCh
Q 045237 146 CRAWVRVSIQYNFKKILDDIIKSVMPASGLSEIIGKDYTLKKSILRDYLTN-KKYMTVLDDIYHD 209 (758)
Q Consensus 146 ~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDDvw~~ 209 (758)
.++.|.....+|..++...|+.+++.+.. ...+..... ......++. +-=+||+|.+.+.
T Consensus 97 PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~---~~~~~~~~~-~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 97 PVVYVQMPPEPDERRFYSAILEALGAPYR---PRDRVAKLE-QQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred cEEEEecCCCCChHHHHHHHHHHhCcccC---CCCCHHHHH-HHHHHHHHHcCCcEEEeechHHH
Confidence 45667777889999999999999998654 223444444 444455543 3448899999763
No 122
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=36.68 E-value=1.6e+02 Score=30.76 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=25.3
Q ss_pred CeEEEEEeCCCCh---hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 197 KKYMTVLDDIYHD---MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 197 kr~LlVLDDvw~~---~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
.+-+||+||+... ...+.+...+.....++++|+||....
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 3447889999754 223444444444456789999987654
No 123
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=35.98 E-value=27 Score=21.70 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=9.5
Q ss_pred CCCcEEEccCCcCc
Q 045237 500 LNLQTLDMPSSYID 513 (758)
Q Consensus 500 ~~L~~L~L~~~~l~ 513 (758)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777654
No 124
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.97 E-value=27 Score=39.40 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=27.4
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCC
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVD 234 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~ 234 (758)
+++-++|+|+++.. ..++.+...+........+|++|..
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 45668999999865 4588888877665556666666544
No 125
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=35.12 E-value=80 Score=32.32 Aligned_cols=84 Identities=10% Similarity=0.116 Sum_probs=43.0
Q ss_pred cCcceehHHHHHHHhCcccccccCCe-eEEEEECCCC-CHHHHHHHHHHhhCCCCCC---cc-ccC-----chhhhHHHH
Q 045237 121 STSYKDALVGLQKAFNSNHVKFYFDC-RAWVRVSIQY-NFKKILDDIIKSVMPASGL---SE-IIG-----KDYTLKKSI 189 (758)
Q Consensus 121 ~~~~~~~ivGa~~vy~~~~~~~~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~---~~-~~~-----~~~~~~~~~ 189 (758)
.+++++.+ |+.+++ .++.+|+. ++++-+.+.. .+.++.+++.+.=.....+ .. +.. .....+ -.
T Consensus 78 ~G~GKTtL--a~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a-~~ 152 (274)
T cd01133 78 AGVGKTVL--IMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTG-LT 152 (274)
T ss_pred CCCChhHH--HHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH-HH
Confidence 34444444 488888 66666744 4555676665 4556666665431111100 00 000 111111 22
Q ss_pred HHHhc---CCCeEEEEEeCCCCh
Q 045237 190 LRDYL---TNKKYMTVLDDIYHD 209 (758)
Q Consensus 190 l~~~L---~~kr~LlVLDDvw~~ 209 (758)
+-+++ ++|.+|+|+||+-..
T Consensus 153 ~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 153 MAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHhcCCeEEEEEeChhHH
Confidence 33444 389999999998554
No 126
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.07 E-value=1.9e+02 Score=34.95 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=30.2
Q ss_pred CCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 195 TNKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 195 ~~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
.+++-++|+|++... ...+.|...+-.-....++|.+|.+.+
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 467779999999865 567888777765555677776665544
No 127
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.90 E-value=3e+02 Score=31.44 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=28.6
Q ss_pred CCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCc
Q 045237 195 TNKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 195 ~~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
.+++-++|+|++... ..++.|...+......+++|.+|.+.
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~ 159 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY 159 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 356669999999754 46788887777655567666555444
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=32.95 E-value=84 Score=37.47 Aligned_cols=20 Identities=20% Similarity=0.477 Sum_probs=15.8
Q ss_pred cceeecchhhHHHHHHHhcC
Q 045237 92 NYFVYESEKAIDTFFTTIMQ 111 (758)
Q Consensus 92 ~~~v~Gr~~~~~~i~~~L~~ 111 (758)
...|+|-+..++.+.+.+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~ 472 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKR 472 (731)
T ss_pred hcceeCcHHHHHHHHHHHHH
Confidence 34678999999999888763
No 129
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=32.00 E-value=39 Score=33.43 Aligned_cols=83 Identities=14% Similarity=0.208 Sum_probs=46.4
Q ss_pred HHHHhCcccccccCC-e-eEEEEECCCCCHHHHHHHHHHhhCCCCCCccccCchhhhHHHHHHHhcCCCeEEEEEeCCCC
Q 045237 131 LQKAFNSNHVKFYFD-C-RAWVRVSIQYNFKKILDDIIKSVMPASGLSEIIGKDYTLKKSILRDYLTNKKYMTVLDDIYH 208 (758)
Q Consensus 131 a~~vy~~~~~~~~F~-~-~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~ 208 (758)
++++++ ++..... . ++++ +..++...+...+..... ..+++.+++- =+|++|||..
T Consensus 51 L~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~~~~-------------~~~~~~~~~~-DlL~iDDi~~ 108 (219)
T PF00308_consen 51 LQAIAN--EAQKQHPGKRVVYL------SAEEFIREFADALRDGEI-------------EEFKDRLRSA-DLLIIDDIQF 108 (219)
T ss_dssp HHHHHH--HHHHHCTTS-EEEE------EHHHHHHHHHHHHHTTSH-------------HHHHHHHCTS-SEEEEETGGG
T ss_pred HHHHHH--HHHhccccccceee------cHHHHHHHHHHHHHcccc-------------hhhhhhhhcC-CEEEEecchh
Confidence 488888 4444332 2 3344 456777777776644221 4556666644 3788999975
Q ss_pred h---hhHHH-HHhhCCC-CCCCcEEEEEeCCc
Q 045237 209 D---MIWND-LREALPD-YQNGSRVLITVVDP 235 (758)
Q Consensus 209 ~---~~w~~-l~~~~~~-~~~gS~iivTTR~~ 235 (758)
. ..|++ +...+.. ...|-+||+|++..
T Consensus 109 l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 109 LAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp GTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred hcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 4 23432 2222221 23467899998654
No 130
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.41 E-value=17 Score=40.21 Aligned_cols=79 Identities=24% Similarity=0.118 Sum_probs=44.0
Q ss_pred CCccEEEEeeccCCCC--CcccccCCCCCceEEEecc--ccCCceeEEeCCCCCccccEEeeccCCCcCceEE-------
Q 045237 623 PSLTQLSLSNTELKED--PMPTLEKLPHLLVLKLKQN--SYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTM------- 691 (758)
Q Consensus 623 ~~L~~L~L~~~~l~~~--~~~~l~~l~~L~~L~L~~n--~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~------- 691 (758)
+.+..++|++|++... +...-...|+|+.|+|++| .+.. ..... .-....|+.|.+.+|+..+....
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~-K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELD-KLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhh-hhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 7888888888876321 1112234678888888876 2211 11111 23445677777777775543321
Q ss_pred Ccccccccceee
Q 045237 692 GARAMTKLESLI 703 (758)
Q Consensus 692 ~~~~l~~L~~L~ 703 (758)
....||+|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 123567776664
No 131
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=31.21 E-value=32 Score=33.89 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=26.9
Q ss_pred CeEEEEEeCCCCh---hhHHHHHhhCCCCCCCcEEEEEeCCccc
Q 045237 197 KKYMTVLDDIYHD---MIWNDLREALPDYQNGSRVLITVVDPDI 237 (758)
Q Consensus 197 kr~LlVLDDvw~~---~~w~~l~~~~~~~~~gS~iivTTR~~~v 237 (758)
.-=++|||||... .....+...+....+.+.+||||-.+.+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~ 201 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEM 201 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc
Confidence 3457899999865 3455666555555567899999988866
No 132
>CHL00095 clpC Clp protease ATP binding subunit
Probab=30.97 E-value=1.6e+02 Score=35.57 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=26.3
Q ss_pred eeecchhhHHHHHHHhcCCCCC--CCccccCcceehHH
Q 045237 94 FVYESEKAIDTFFTTIMQPQSS--ESESESTSYKDALV 129 (758)
Q Consensus 94 ~v~Gr~~~~~~i~~~L~~~~~~--~~~~~~~~~~~~iv 129 (758)
.++||+++++++++.|...... --.++.|+++++||
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHH
Confidence 4669999999999999653321 13456778888887
No 133
>PRK08181 transposase; Validated
Probab=29.40 E-value=1e+02 Score=31.57 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=19.1
Q ss_pred EEEEEeCCCCh---hhH-HHHHhhCCCCCCCcEEEEEeCCc
Q 045237 199 YMTVLDDIYHD---MIW-NDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 199 ~LlVLDDvw~~---~~w-~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
=||||||+... ..| +.+...+...-.+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 49999999643 222 22333222211123578887655
No 134
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=29.34 E-value=56 Score=32.76 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=17.6
Q ss_pred ccCcceehHHHHHHHhCcccccccCCeeEEEEE
Q 045237 120 ESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRV 152 (758)
Q Consensus 120 ~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~v 152 (758)
.+|.++++.+ ..+.. ....+|+.+.+++-
T Consensus 21 ~sGSGKT~li--~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 21 KSGSGKTTLI--KSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CCCCCHHHHH--HHHHH--hhcccCCEEEEEec
Confidence 3556677666 55554 46678876666543
No 135
>PRK08727 hypothetical protein; Validated
Probab=28.70 E-value=85 Score=31.30 Aligned_cols=37 Identities=16% Similarity=-0.007 Sum_probs=21.6
Q ss_pred EEEEEeCCCCh---hhHHH-HHhhCCC-CCCCcEEEEEeCCc
Q 045237 199 YMTVLDDIYHD---MIWND-LREALPD-YQNGSRVLITVVDP 235 (758)
Q Consensus 199 ~LlVLDDvw~~---~~w~~-l~~~~~~-~~~gS~iivTTR~~ 235 (758)
-+||+||+... ..|+. +...+.. ...|..||+||+..
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~ 136 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQM 136 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 48999999743 23432 2222221 23467799998764
No 136
>PRK12608 transcription termination factor Rho; Provisional
Probab=28.60 E-value=1.3e+02 Score=32.39 Aligned_cols=100 Identities=9% Similarity=-0.023 Sum_probs=52.5
Q ss_pred HHHHHHHhcCC---CCCCCccccCcceehHHHHHHHhCcccccc-cCCe-eEEEEECCCC-CHHHHHHHHHHhhCCCCC-
Q 045237 102 IDTFFTTIMQP---QSSESESESTSYKDALVGLQKAFNSNHVKF-YFDC-RAWVRVSIQY-NFKKILDDIIKSVMPASG- 174 (758)
Q Consensus 102 ~~~i~~~L~~~---~~~~~~~~~~~~~~~ivGa~~vy~~~~~~~-~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~~~- 174 (758)
..++++.+... |.....+..+++++++.+ .+.+ .+.. +=+. ++|+.+.+.. .+.++.+.+...+.....
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~--~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQ--QIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHH--HHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 34566666421 111223455667777764 3333 1211 2234 4677777654 688888888887765321
Q ss_pred -CccccCchh----hhHHHHHHHhcCCCeEEEEEeCCCC
Q 045237 175 -LSEIIGKDY----TLKKSILRDYLTNKKYMTVLDDIYH 208 (758)
Q Consensus 175 -~~~~~~~~~----~~~~~~l~~~L~~kr~LlVLDDvw~ 208 (758)
.+....... +.+ +.+++ ++++++||+|++-.
T Consensus 196 e~~~~~~~v~~~~~~~A-e~f~~--~GkdVVLvlDsltr 231 (380)
T PRK12608 196 RPPDEHIRVAELVLERA-KRLVE--QGKDVVILLDSLTR 231 (380)
T ss_pred CCHHHHHHHHHHHHHHH-HHHHH--cCCCEEEEEeCcHH
Confidence 110000111 222 23332 58999999999854
No 137
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=28.47 E-value=1.1e+02 Score=33.82 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=41.7
Q ss_pred HHHHhCcccccccC-C-eeEEEEECCCCCHHHHHHHHHHhhCCCCCCccccCchhhhHHHHHHHhcCCCeEEEEEeCCCC
Q 045237 131 LQKAFNSNHVKFYF-D-CRAWVRVSIQYNFKKILDDIIKSVMPASGLSEIIGKDYTLKKSILRDYLTNKKYMTVLDDIYH 208 (758)
Q Consensus 131 a~~vy~~~~~~~~F-~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~ 208 (758)
|+++.+ ++.... . .++|++ ..++..++...+.... . ..+++....+.-+|++||+..
T Consensus 147 l~ai~~--~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~~--------~-----~~f~~~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 147 LQSIGN--YVVQNEPDLRVMYIT------SEKFLNDLVDSMKEGK--------L-----NEFREKYRKKVDVLLIDDVQF 205 (440)
T ss_pred HHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHhccc--------H-----HHHHHHHHhcCCEEEEechhh
Confidence 688888 444443 3 244553 3456666666653221 1 233334433455899999974
Q ss_pred h---hhH-HHHHhhCCC-CCCCcEEEEEeC
Q 045237 209 D---MIW-NDLREALPD-YQNGSRVLITVV 233 (758)
Q Consensus 209 ~---~~w-~~l~~~~~~-~~~gS~iivTTR 233 (758)
. ..+ +.+...+.. ...|..||+||.
T Consensus 206 l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 206 LIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred hcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 3 112 223222221 123457888875
No 138
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.29 E-value=3e+02 Score=32.18 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=29.9
Q ss_pred CCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 195 TNKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 195 ~~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
.+++-++|+|+|... ...+.+...+.....+.++|++|.+..
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~ 159 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChH
Confidence 356668899999865 457777777765556778888876653
No 139
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=28.13 E-value=4.6e+02 Score=30.83 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=26.6
Q ss_pred CCeEEEEEeCCCChh--hHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 196 NKKYMTVLDDIYHDM--IWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 196 ~kr~LlVLDDvw~~~--~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
+++-++|+|++.... ..+.|...+..-....++|++|.+..
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 456689999997653 35666666654444667777775543
No 140
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=27.65 E-value=59 Score=30.28 Aligned_cols=49 Identities=10% Similarity=0.199 Sum_probs=33.8
Q ss_pred HHHHHhcCC-CeEEEEEeCCCCh-----hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 188 SILRDYLTN-KKYMTVLDDIYHD-----MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 188 ~~l~~~L~~-kr~LlVLDDvw~~-----~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
+..++.+.. +-=|||||++-.. ...+++...+.....+.-+|+|.|+..
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 344455544 4569999998654 345666666666666789999999864
No 141
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=26.57 E-value=89 Score=34.21 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHHhCcccccccCCe--eEEEEECCCCCHHHHHHHHHHhhCCCCCCccccCchhhhHHHHHHHhcCCCeEEEEEeCCCC
Q 045237 131 LQKAFNSNHVKFYFDC--RAWVRVSIQYNFKKILDDIIKSVMPASGLSEIIGKDYTLKKSILRDYLTNKKYMTVLDDIYH 208 (758)
Q Consensus 131 a~~vy~~~~~~~~F~~--~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~ 208 (758)
|+++++ ++...... ++|+. ...+..++...+... .. ..+.+.+++ .=+|||||+..
T Consensus 153 ~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~--------~~-----~~~~~~~~~-~dlLiiDDi~~ 210 (405)
T TIGR00362 153 LHAIGN--EILENNPNAKVVYVS------SEKFTNDFVNALRNN--------KM-----EEFKEKYRS-VDLLLIDDIQF 210 (405)
T ss_pred HHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC--------CH-----HHHHHHHHh-CCEEEEehhhh
Confidence 588887 44444322 34443 344555565555321 11 233333433 23788999975
Q ss_pred h---hhH-HHHHhhCCC-CCCCcEEEEEeCC
Q 045237 209 D---MIW-NDLREALPD-YQNGSRVLITVVD 234 (758)
Q Consensus 209 ~---~~w-~~l~~~~~~-~~~gS~iivTTR~ 234 (758)
. ..+ +.+...+.. ...|..||+||..
T Consensus 211 l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 211 LAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred hcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 3 112 223332221 1235567777654
No 142
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=25.77 E-value=6e+02 Score=26.24 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=25.6
Q ss_pred CeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCc
Q 045237 197 KKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 197 kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
.+-++++|++... ...+.+...+......+++|+++...
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCc
Confidence 3558999998754 34566666665555567788777543
No 143
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.77 E-value=5.6e+02 Score=29.99 Aligned_cols=42 Identities=12% Similarity=0.290 Sum_probs=28.7
Q ss_pred CCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 195 TNKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 195 ~~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
.++.-++|+|++... ..++.|...+..-....++|++|.+.+
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 455668999999865 467888887766555666665555443
No 144
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.69 E-value=38 Score=37.65 Aligned_cols=79 Identities=22% Similarity=0.132 Sum_probs=40.6
Q ss_pred cCCeeEEEEcCCCCCCC---CCccccCcccccEEeccCC--CCcccCcccc--CCCCCcEEEccCCcCccc---c-hhhc
Q 045237 452 KFKLLRVLNMGSLVLDQ---FPSGIENLFLLRCLKLDVP--SLKSLPSSLC--NLLNLQTLDMPSSYIDHT---P-EDIW 520 (758)
Q Consensus 452 ~l~~Lr~L~L~~~~l~~---lp~~i~~l~~Lr~L~L~~~--~i~~lp~~i~--~L~~L~~L~L~~~~l~~l---p-~~i~ 520 (758)
+++.+..+.|++|++.. +..--...++|+.|+|++| .+...+ ++. +..-|++|-+.||.+.+- + +.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 34455555566665432 2222234556777777776 333222 222 234567777777766332 1 1122
Q ss_pred ----ccccCcEEEcC
Q 045237 521 ----NMHKLMHLNFG 531 (758)
Q Consensus 521 ----~l~~L~~L~l~ 531 (758)
.+|+|..||-.
T Consensus 295 ~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGV 309 (585)
T ss_pred HHHHhcchheeecCc
Confidence 57788877643
No 145
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.42 E-value=5.7e+02 Score=28.97 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=27.9
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCc
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
++.-++|+|+|... ...+.+...+..-...+++|.+|.+.
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECCh
Confidence 45567889999864 45777777766655567777766554
No 146
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.16 E-value=4.9e+02 Score=27.91 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCeEEEEEeCCCChh--hHHHHHhhCCCCCCCcEEEEEeCCc
Q 045237 196 NKKYMTVLDDIYHDM--IWNDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 196 ~kr~LlVLDDvw~~~--~w~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
+++-++|+|++.... .++.+...+.......++|++|.+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 455689999998763 5778887776656677788777554
No 147
>PRK10865 protein disaggregation chaperone; Provisional
Probab=24.54 E-value=2.3e+02 Score=34.52 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=29.5
Q ss_pred ceeecchhhHHHHHHHhcCCCCCC--CccccCcceehHHH--HHHHhC
Q 045237 93 YFVYESEKAIDTFFTTIMQPQSSE--SESESTSYKDALVG--LQKAFN 136 (758)
Q Consensus 93 ~~v~Gr~~~~~~i~~~L~~~~~~~--~~~~~~~~~~~ivG--a~~vy~ 136 (758)
+.|+||+.++.++++.|....... -.++.|+++++|+= |+.+.+
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 346799999999999886533211 23467788888874 454443
No 148
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=24.30 E-value=2e+02 Score=35.05 Aligned_cols=43 Identities=19% Similarity=0.130 Sum_probs=28.5
Q ss_pred eeecchhhHHHHHHHhcCCCC--CCCccccCcceehHHH--HHHHhC
Q 045237 94 FVYESEKAIDTFFTTIMQPQS--SESESESTSYKDALVG--LQKAFN 136 (758)
Q Consensus 94 ~v~Gr~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~ivG--a~~vy~ 136 (758)
.++||+.++.++++.|..... .--.++.|+++++|+- |+.+.+
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 466999999999998865321 1123456788888874 444433
No 149
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=23.41 E-value=3.8e+02 Score=31.26 Aligned_cols=132 Identities=10% Similarity=0.016 Sum_probs=67.1
Q ss_pred eecchhhHHHHHHHhcCCCCC-CCccccCcce--ehHHH----HHHHhCccc---ccccCCeeEEEEEC--CCCCHHHHH
Q 045237 95 VYESEKAIDTFFTTIMQPQSS-ESESESTSYK--DALVG----LQKAFNSNH---VKFYFDCRAWVRVS--IQYNFKKIL 162 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~-~~~~~~~~~~--~~ivG----a~~vy~~~~---~~~~F~~~~wv~vs--~~~~~~~i~ 162 (758)
+-+||.+..+|..++...-.+ +.+ .-+|| ++..| ...|-+.-+ -++.-....||.+. +--.+.++.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g--~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLG--SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCc--eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 349999999999988643333 211 12233 33333 133333111 11112222344432 223578999
Q ss_pred HHHHHhhCCCCCCccccCchhhhHHHHHHHhcC-----CCeEEEEEeCCCChhh-HHHHH-hhCCC-CCCCcEEEEEeCC
Q 045237 163 DDIIKSVMPASGLSEIIGKDYTLKKSILRDYLT-----NKKYMTVLDDIYHDMI-WNDLR-EALPD-YQNGSRVLITVVD 234 (758)
Q Consensus 163 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDDvw~~~~-w~~l~-~~~~~-~~~gS~iivTTR~ 234 (758)
..|+.++.+....+ ....+ .|..+.. .+..+|++|.++.... =+++. .-|.| ..++||++|.+-.
T Consensus 476 ~~I~~~lsg~~~~~--~~al~-----~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 476 EKIWEALSGERVTW--DAALE-----ALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHhcccCcccH--HHHHH-----HHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 99999998855311 11223 3333332 3568888888754311 11222 23344 4678988887544
Q ss_pred c
Q 045237 235 P 235 (758)
Q Consensus 235 ~ 235 (758)
.
T Consensus 549 N 549 (767)
T KOG1514|consen 549 N 549 (767)
T ss_pred c
Confidence 3
No 150
>PF13730 HTH_36: Helix-turn-helix domain
Probab=23.02 E-value=2.7e+02 Score=20.08 Aligned_cols=51 Identities=27% Similarity=0.380 Sum_probs=30.9
Q ss_pred CcchhHHHHHhHhcccCCC--cee-eHhHHHHHHHHcCCCCCChHHHHHHHHHHHHhCccc
Q 045237 301 ELPLYLKFCCFYLCVFYGN--LEI-STRQLYQLWMAEGFVAHNSEANAEEYLKELISRGLI 358 (758)
Q Consensus 301 ~L~~~~k~cFl~~a~Fp~~--~~i-~~~~Li~~w~a~g~i~~~~~~~~~~~~~~Lv~~sll 358 (758)
+|++..+..+.++.-|..+ .-+ +.+.+... . |. .......++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~-~--g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKD-L--GV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHH-H--Cc----CHHHHHHHHHHHHHCcCC
Confidence 5777788888777665422 122 22332222 1 22 366778899999999875
No 151
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.83 E-value=8.1e+02 Score=27.90 Aligned_cols=41 Identities=12% Similarity=0.295 Sum_probs=28.1
Q ss_pred CCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCc
Q 045237 195 TNKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 195 ~~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
.+++-++|+|++... ...+.+...+..-...+.+|.+|.+.
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCCh
Confidence 356668999999865 34777777776655566777666554
No 152
>PLN03025 replication factor C subunit; Provisional
Probab=22.60 E-value=5.5e+02 Score=26.87 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=26.4
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCc
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
++.-+++||++... ..-+.+...+......+++|+||...
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~ 139 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTS 139 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCc
Confidence 45668999999865 33455555554445567888877654
No 153
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=22.03 E-value=1.4e+02 Score=33.33 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=22.5
Q ss_pred HHHhcCCCeEEEEEeCCCCh---hhH-HHHHhhCCC-CCCCcEEEEEeCCc
Q 045237 190 LRDYLTNKKYMTVLDDIYHD---MIW-NDLREALPD-YQNGSRVLITVVDP 235 (758)
Q Consensus 190 l~~~L~~kr~LlVLDDvw~~---~~w-~~l~~~~~~-~~~gS~iivTTR~~ 235 (758)
+.+.+++ --+||||||... ..+ +.+...+.. ...|..||+||...
T Consensus 205 ~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 205 FKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred HHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 3344443 348999999642 112 233332221 12355678877653
No 154
>PRK08939 primosomal protein DnaI; Reviewed
Probab=21.97 E-value=2.1e+02 Score=29.95 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=22.9
Q ss_pred CeEEEEEeCCCCh--hhHH--HHHhhC-CCC-CCCcEEEEEeCCc
Q 045237 197 KKYMTVLDDIYHD--MIWN--DLREAL-PDY-QNGSRVLITVVDP 235 (758)
Q Consensus 197 kr~LlVLDDvw~~--~~w~--~l~~~~-~~~-~~gS~iivTTR~~ 235 (758)
+-=||||||+-.+ ..|. ++...+ ... ..+-.+|+||...
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 3458999999754 4564 354443 222 2456677776543
No 155
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=21.93 E-value=7.1e+02 Score=27.09 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=27.8
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCccc
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPDI 237 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~v 237 (758)
+++-++++|++... ...+.+...+....++..+|++|.+..-
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~ 159 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPED 159 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHH
Confidence 44457777999865 4456677666655567777777776543
No 156
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=21.43 E-value=9e+02 Score=25.45 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=27.4
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
+++-++|+|++... ...+.+...+......+.+|++|.+.+
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~ 158 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPH 158 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHH
Confidence 34458889998654 457777777755555677777775543
No 157
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=21.04 E-value=6.7e+02 Score=23.60 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=28.7
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCc
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
+.+-++|+||+... ..++.+...+....+.+.+|++|++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 45568899998764 45777888777656677777777654
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=20.91 E-value=3.4e+02 Score=33.11 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=15.5
Q ss_pred ceeecchhhHHHHHHHhcC
Q 045237 93 YFVYESEKAIDTFFTTIMQ 111 (758)
Q Consensus 93 ~~v~Gr~~~~~~i~~~L~~ 111 (758)
..|+|.+..++.+...+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~ 583 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRR 583 (852)
T ss_pred cccCCChHHHHHHHHHHHH
Confidence 4577999999999988864
No 159
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=20.91 E-value=3.4e+02 Score=23.22 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=26.0
Q ss_pred HHHHHhcCCCe-EEEEEeCCCChhhHHHHHhhC----------CCCCCCcEEEEEeCC
Q 045237 188 SILRDYLTNKK-YMTVLDDIYHDMIWNDLREAL----------PDYQNGSRVLITVVD 234 (758)
Q Consensus 188 ~~l~~~L~~kr-~LlVLDDvw~~~~w~~l~~~~----------~~~~~gS~iivTTR~ 234 (758)
..+.+..+..+ .+|++|++............. .....+..+|.||..
T Consensus 68 ~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 68 RLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 44444444444 999999999864333222111 122345677777664
No 160
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=20.30 E-value=4.8e+02 Score=31.06 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeC
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVV 233 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR 233 (758)
+++.+|+||||+.. .+++.+...+. .|+.++|++.
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aT 144 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGAT 144 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEec
Confidence 46789999999754 56666665443 3666666433
No 161
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.21 E-value=7.8e+02 Score=28.64 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=27.3
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCC
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVD 234 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~ 234 (758)
++.-++|+|+|... ..++.+...+..-....++|++|.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 44557899999865 4678888777665556677666644
No 162
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=20.19 E-value=1.7e+02 Score=28.58 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=21.6
Q ss_pred EEEEeCCCChh---hH-HHHHhhCCC-CCCCcEEEEEeCCc
Q 045237 200 MTVLDDIYHDM---IW-NDLREALPD-YQNGSRVLITVVDP 235 (758)
Q Consensus 200 LlVLDDvw~~~---~w-~~l~~~~~~-~~~gS~iivTTR~~ 235 (758)
+||+||+.... .| +.+...+.. ...+.++|+||+..
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 89999998642 33 344443332 12345888888754
No 163
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=20.01 E-value=1.9e+02 Score=34.22 Aligned_cols=129 Identities=15% Similarity=0.199 Sum_probs=69.7
Q ss_pred ccccceeecchhhHHHHHHHhcCCCCCCCccccCcce-----ehHHH--------HHHHhCcccccccCCeeEEEEECCC
Q 045237 89 NDINYFVYESEKAIDTFFTTIMQPQSSESESESTSYK-----DALVG--------LQKAFNSNHVKFYFDCRAWVRVSIQ 155 (758)
Q Consensus 89 ~~~~~~v~Gr~~~~~~i~~~L~~~~~~~~~~~~~~~~-----~~ivG--------a~~vy~~~~~~~~F~~~~wv~vs~~ 155 (758)
......|+|-|..++.+.+.+......-....+.++. -+.|| |..+|.++.---.
T Consensus 487 ~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR------------ 554 (786)
T COG0542 487 RRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIR------------ 554 (786)
T ss_pred HHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCcccee------------
Confidence 3344568899999999998886433321222222222 24455 6666665433323
Q ss_pred CCHHHHH-HHHHHhhCCCCCCccccCchhhhHHHHHHHhcCCCeE-EEEEeCCCC--hhhHHHHHhhCCCC----CCC--
Q 045237 156 YNFKKIL-DDIIKSVMPASGLSEIIGKDYTLKKSILRDYLTNKKY-MTVLDDIYH--DMIWNDLREALPDY----QNG-- 225 (758)
Q Consensus 156 ~~~~~i~-~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDDvw~--~~~w~~l~~~~~~~----~~g-- 225 (758)
||+.+.. +.=++.+.+..+ +.-..++ . -.|-+.+++|.| .|.||.|.. .+..+-+..-+.++ +.|
T Consensus 555 ~DMSEy~EkHsVSrLIGaPP---GYVGyee-G-G~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~ 629 (786)
T COG0542 555 IDMSEYMEKHSVSRLIGAPP---GYVGYEE-G-GQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRT 629 (786)
T ss_pred echHHHHHHHHHHHHhCCCC---CCceecc-c-cchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCE
Confidence 3444432 223344444322 2222223 2 357788888988 777898874 35566666666543 223
Q ss_pred -----cEEEEEeCC
Q 045237 226 -----SRVLITVVD 234 (758)
Q Consensus 226 -----S~iivTTR~ 234 (758)
+-||+||.-
T Consensus 630 VdFrNtiIImTSN~ 643 (786)
T COG0542 630 VDFRNTIIIMTSNA 643 (786)
T ss_pred EecceeEEEEeccc
Confidence 556677543
Done!