Query 045237
Match_columns 758
No_of_seqs 465 out of 4721
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 19:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.9E-34 1.3E-38 324.5 15.0 267 96-391 131-473 (549)
2 3rgz_A Protein brassinosteroid 99.9 7E-28 2.4E-32 285.4 12.3 336 404-757 294-765 (768)
3 1vt4_I APAF-1 related killer D 99.9 3.5E-27 1.2E-31 270.5 11.5 246 96-383 131-437 (1221)
4 3v47_A TOLL-like receptor 5B a 99.9 1.7E-25 5.6E-30 249.1 17.2 313 402-732 28-406 (455)
5 3rgz_A Protein brassinosteroid 99.9 9.5E-26 3.3E-30 267.1 16.1 312 403-732 199-549 (768)
6 2id5_A Lingo-1, leucine rich r 99.9 3E-25 1E-29 248.6 19.2 297 420-732 26-331 (477)
7 2z7x_B TOLL-like receptor 1, v 99.9 4.1E-25 1.4E-29 250.3 17.7 58 673-732 421-479 (520)
8 4eco_A Uncharacterized protein 99.9 3.7E-25 1.3E-29 256.0 17.0 308 403-732 248-598 (636)
9 4eco_A Uncharacterized protein 99.9 2E-25 7E-30 258.2 14.2 311 402-732 204-577 (636)
10 3sfz_A APAF-1, apoptotic pepti 99.9 1.7E-25 5.7E-30 280.3 14.5 264 95-389 126-452 (1249)
11 4ecn_A Leucine-rich repeat pro 99.9 1E-24 3.5E-29 256.9 19.9 308 403-732 490-838 (876)
12 4ecn_A Leucine-rich repeat pro 99.9 8.3E-25 2.8E-29 257.7 17.4 311 402-732 446-817 (876)
13 3o6n_A APL1; leucine-rich repe 99.9 1.2E-24 4.2E-29 236.9 17.4 282 426-732 45-350 (390)
14 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-24 4.2E-29 248.7 17.7 143 407-556 34-181 (562)
15 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-24 3.7E-29 246.8 16.3 304 404-732 21-455 (520)
16 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-24 7.6E-29 249.1 17.1 321 402-732 30-532 (606)
17 4fmz_A Internalin; leucine ric 99.9 5.4E-24 1.9E-28 227.9 18.7 297 403-732 43-344 (347)
18 4fmz_A Internalin; leucine ric 99.9 7.2E-24 2.5E-28 227.0 19.6 275 426-732 44-322 (347)
19 3oja_B Anopheles plasmodium-re 99.9 3E-24 1E-28 247.0 17.4 282 426-732 51-356 (597)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.3E-24 1.1E-28 245.1 17.2 305 402-732 50-508 (562)
21 1o6v_A Internalin A; bacterial 99.9 1.5E-23 5E-28 233.9 20.0 301 404-732 46-364 (466)
22 4fcg_A Uncharacterized protein 99.9 9.3E-24 3.2E-28 223.8 16.7 230 452-731 79-311 (328)
23 2z63_A TOLL-like receptor 4, v 99.9 1.4E-23 4.8E-28 240.6 19.5 112 617-732 416-529 (570)
24 3t6q_A CD180 antigen; protein- 99.9 3.9E-24 1.3E-28 247.1 13.9 289 426-732 254-558 (606)
25 3t6q_A CD180 antigen; protein- 99.9 1.7E-23 5.9E-28 241.6 18.3 265 455-732 255-534 (606)
26 3vq2_A TLR4, TOLL-like recepto 99.9 5.4E-24 1.8E-28 245.9 14.0 186 540-732 346-556 (606)
27 3j0a_A TOLL-like receptor 5; m 99.9 8E-23 2.7E-27 244.5 21.0 312 402-732 22-392 (844)
28 2id5_A Lingo-1, leucine rich r 99.9 1E-22 3.6E-27 227.9 19.0 265 454-732 32-307 (477)
29 1o6v_A Internalin A; bacterial 99.9 1.5E-22 5.2E-27 225.7 19.6 295 402-732 66-386 (466)
30 3o6n_A APL1; leucine-rich repe 99.9 7.3E-23 2.5E-27 222.8 15.6 267 452-732 43-329 (390)
31 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-22 6.6E-27 229.9 19.5 311 404-732 26-508 (549)
32 3v47_A TOLL-like receptor 5B a 99.9 1.6E-23 5.5E-28 233.0 10.1 300 424-732 28-382 (455)
33 3bz5_A Internalin-J, INLJ; leu 99.9 6E-22 2.1E-26 219.4 22.6 290 403-732 41-350 (457)
34 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-22 8.2E-27 222.6 19.4 269 426-732 42-329 (457)
35 1xku_A Decorin; proteoglycan, 99.9 2.1E-22 7.3E-27 213.9 17.1 259 455-732 32-304 (330)
36 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-23 4.7E-28 221.1 7.8 243 454-732 50-302 (313)
37 3j0a_A TOLL-like receptor 5; m 99.9 7.7E-23 2.6E-27 244.7 14.7 299 424-732 22-373 (844)
38 1ziw_A TOLL-like receptor 3; i 99.9 1.6E-22 5.6E-27 236.8 16.9 319 402-732 23-364 (680)
39 3oja_B Anopheles plasmodium-re 99.9 1.5E-22 5E-27 232.8 16.1 267 452-732 49-335 (597)
40 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-22 6E-27 230.3 15.7 301 420-732 20-421 (549)
41 2ft3_A Biglycan; proteoglycan, 99.9 4.7E-22 1.6E-26 211.4 15.5 259 454-732 54-331 (332)
42 2z63_A TOLL-like receptor 4, v 99.9 6.1E-22 2.1E-26 226.9 16.3 150 402-555 26-188 (570)
43 1ogq_A PGIP-2, polygalacturona 99.9 4.8E-23 1.6E-27 216.9 4.9 221 477-732 50-279 (313)
44 1xku_A Decorin; proteoglycan, 99.9 4.1E-22 1.4E-26 211.7 12.1 259 454-731 52-329 (330)
45 1ziw_A TOLL-like receptor 3; i 99.9 3.7E-21 1.3E-25 225.2 19.7 291 428-731 250-594 (680)
46 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-21 3.8E-26 208.5 13.4 280 406-708 35-331 (332)
47 1z6t_A APAF-1, apoptotic prote 99.9 3.2E-21 1.1E-25 221.7 15.5 265 95-386 126-449 (591)
48 4fcg_A Uncharacterized protein 99.8 1.4E-21 4.8E-26 207.0 9.3 229 426-683 81-311 (328)
49 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-20 4.3E-25 218.7 16.6 127 402-532 50-182 (635)
50 2z80_A TOLL-like receptor 2, v 99.8 6.7E-21 2.3E-25 204.3 12.7 246 455-732 53-312 (353)
51 2z80_A TOLL-like receptor 2, v 99.8 1.1E-20 3.9E-25 202.5 10.7 247 420-684 46-312 (353)
52 2z66_A Variable lymphocyte rec 99.8 1.1E-20 3.6E-25 198.5 10.1 125 454-579 28-160 (306)
53 1jl5_A Outer protein YOPM; leu 99.8 1.2E-19 4E-24 200.8 17.8 281 403-732 90-407 (454)
54 4g8a_A TOLL-like receptor 4; l 99.8 5.7E-20 2E-24 213.2 15.6 323 402-732 74-578 (635)
55 3g06_A SSPH2 (leucine-rich rep 99.8 2.5E-19 8.4E-24 204.4 19.9 231 454-732 61-295 (622)
56 2z66_A Variable lymphocyte rec 99.8 5.5E-20 1.9E-24 193.0 11.5 238 458-709 11-260 (306)
57 3zyi_A Leucine-rich repeat-con 99.8 1.1E-19 3.7E-24 201.8 13.7 216 454-683 75-300 (452)
58 1ozn_A Reticulon 4 receptor; N 99.8 4E-20 1.4E-24 191.9 9.7 258 458-731 15-284 (285)
59 3o53_A Protein LRIM1, AGAP0063 99.8 7.4E-21 2.5E-25 200.7 3.5 249 444-712 24-277 (317)
60 3zyj_A Leucine-rich repeat-con 99.8 1.6E-19 5.4E-24 199.7 14.2 217 454-684 64-290 (440)
61 3g06_A SSPH2 (leucine-rich rep 99.8 8.3E-19 2.8E-23 200.0 15.7 261 406-719 42-306 (622)
62 1wwl_A Monocyte differentiatio 99.8 1.3E-20 4.6E-25 198.2 -0.0 224 456-732 65-307 (312)
63 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.7E-23 193.6 15.0 240 455-732 55-301 (452)
64 3zyj_A Leucine-rich repeat-con 99.8 1.7E-18 5.9E-23 191.4 15.6 224 419-659 57-291 (440)
65 3oja_A Leucine-rich immune mol 99.8 6.5E-20 2.2E-24 204.9 3.9 235 451-705 31-270 (487)
66 1ozn_A Reticulon 4 receptor; N 99.8 4.1E-19 1.4E-23 184.3 8.9 241 453-707 31-284 (285)
67 1jl5_A Outer protein YOPM; leu 99.8 6.2E-19 2.1E-23 195.0 10.8 258 405-708 12-288 (454)
68 3o53_A Protein LRIM1, AGAP0063 99.8 3.5E-19 1.2E-23 187.8 7.6 256 454-732 10-273 (317)
69 1z7x_W Ribonuclease inhibitor; 99.8 1.3E-20 4.5E-25 209.8 -5.3 304 426-732 28-409 (461)
70 3oja_A Leucine-rich immune mol 99.7 1.2E-18 4.3E-23 194.5 8.7 231 475-728 32-269 (487)
71 1z7x_W Ribonuclease inhibitor; 99.7 1.9E-20 6.4E-25 208.6 -7.0 297 427-732 86-438 (461)
72 3ogk_B Coronatine-insensitive 99.7 8.1E-19 2.8E-23 201.9 2.9 88 643-732 432-524 (592)
73 2z62_A TOLL-like receptor 4, v 99.7 3.7E-17 1.3E-21 168.7 13.9 197 454-660 28-237 (276)
74 1wwl_A Monocyte differentiatio 99.7 4.2E-18 1.4E-22 179.1 5.0 227 425-708 62-307 (312)
75 1h6u_A Internalin H; cell adhe 99.7 3.8E-17 1.3E-21 171.3 11.4 189 452-661 39-231 (308)
76 3ogk_B Coronatine-insensitive 99.7 4.3E-18 1.5E-22 195.8 4.7 61 448-508 186-251 (592)
77 2o6q_A Variable lymphocyte rec 99.7 2.5E-16 8.5E-21 161.8 15.8 195 455-684 17-216 (270)
78 2ast_B S-phase kinase-associat 99.7 2E-18 7E-23 183.6 -0.0 252 428-718 49-314 (336)
79 3rfs_A Internalin B, repeat mo 99.7 6.2E-17 2.1E-21 166.5 10.8 209 451-722 38-247 (272)
80 2z62_A TOLL-like receptor 4, v 99.7 9.5E-17 3.2E-21 165.6 11.9 216 458-710 11-237 (276)
81 1p9a_G Platelet glycoprotein I 99.7 3E-16 1E-20 162.8 14.3 195 450-659 6-207 (290)
82 3rfs_A Internalin B, repeat mo 99.7 9.4E-17 3.2E-21 165.2 10.2 208 457-730 22-231 (272)
83 1p9a_G Platelet glycoprotein I 99.7 1.9E-16 6.4E-21 164.3 12.3 199 473-732 6-206 (290)
84 2p1m_B Transport inhibitor res 99.7 6.7E-18 2.3E-22 194.3 -0.4 322 404-732 105-517 (594)
85 2o6q_A Variable lymphocyte rec 99.6 9.1E-16 3.1E-20 157.6 14.6 194 478-710 17-218 (270)
86 2ca6_A RAN GTPase-activating p 99.6 4.7E-18 1.6E-22 184.5 -2.9 250 444-713 22-319 (386)
87 4ay9_X Follicle-stimulating ho 99.6 4.1E-16 1.4E-20 166.6 12.3 98 457-556 12-116 (350)
88 1h6u_A Internalin H; cell adhe 99.6 5.2E-16 1.8E-20 162.6 11.9 200 461-684 26-228 (308)
89 2ast_B S-phase kinase-associat 99.6 2.5E-17 8.5E-22 175.2 0.9 254 406-694 49-314 (336)
90 2xwt_C Thyrotropin receptor; s 99.6 5.9E-16 2E-20 155.9 10.7 206 466-732 23-237 (239)
91 2ca6_A RAN GTPase-activating p 99.6 9E-17 3.1E-21 174.4 2.3 232 426-684 32-314 (386)
92 2xwt_C Thyrotropin receptor; s 99.6 9.8E-16 3.4E-20 154.3 9.3 102 454-579 31-140 (239)
93 4ay9_X Follicle-stimulating ho 99.6 3.3E-15 1.1E-19 159.6 12.6 78 455-532 31-113 (350)
94 2p1m_B Transport inhibitor res 99.6 1.2E-16 4E-21 183.8 -2.0 300 426-731 184-541 (594)
95 4glp_A Monocyte differentiatio 99.6 6.4E-15 2.2E-19 154.5 10.9 226 426-684 64-305 (310)
96 3goz_A Leucine-rich repeat-con 99.6 3.7E-16 1.3E-20 167.9 1.2 231 445-684 13-295 (362)
97 4glp_A Monocyte differentiatio 99.6 3E-15 1E-19 157.0 7.7 107 619-732 194-305 (310)
98 1h6t_A Internalin B; cell adhe 99.5 7.1E-15 2.4E-19 152.5 9.8 170 451-661 43-214 (291)
99 1m9s_A Internalin B; cell inva 99.5 9.3E-15 3.2E-19 166.4 10.7 122 452-579 41-163 (605)
100 3m19_A Variable lymphocyte rec 99.5 4.5E-14 1.5E-18 143.2 13.5 174 454-661 14-193 (251)
101 3cvr_A Invasion plasmid antige 99.5 3.1E-14 1E-18 160.4 10.7 177 455-664 60-247 (571)
102 3goz_A Leucine-rich repeat-con 99.5 1.2E-14 4E-19 156.1 6.0 88 428-515 24-124 (362)
103 1m9s_A Internalin B; cell inva 99.5 4.4E-14 1.5E-18 160.9 9.7 187 456-662 23-212 (605)
104 3m19_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 139.5 12.2 172 477-684 14-190 (251)
105 1h6t_A Internalin B; cell adhe 99.5 1.4E-13 4.8E-18 142.8 11.2 181 459-684 29-211 (291)
106 4ezg_A Putative uncharacterize 99.5 7.9E-14 2.7E-18 135.7 8.2 150 566-732 41-192 (197)
107 4ezg_A Putative uncharacterize 99.4 2.4E-13 8.2E-18 132.3 9.9 151 474-660 41-194 (197)
108 2o6s_A Variable lymphocyte rec 99.4 3E-13 1E-17 132.8 9.7 119 458-579 11-134 (208)
109 3cvr_A Invasion plasmid antige 99.4 8.6E-14 2.9E-18 156.7 5.9 184 427-648 60-255 (571)
110 1xeu_A Internalin C; cellular 99.4 1.1E-13 3.8E-18 141.2 6.2 168 453-662 18-187 (263)
111 4b8c_D Glucose-repressible alc 99.4 2.2E-13 7.5E-18 159.1 6.9 123 445-592 215-337 (727)
112 2o6s_A Variable lymphocyte rec 99.4 1.2E-12 3.9E-17 128.6 10.0 52 479-532 9-61 (208)
113 1dce_A Protein (RAB geranylger 99.4 1.9E-15 6.6E-20 171.0 -12.6 118 596-728 442-567 (567)
114 1dce_A Protein (RAB geranylger 99.3 6.3E-15 2.1E-19 166.8 -8.7 102 623-732 441-544 (567)
115 2v9t_B SLIT homolog 2 protein 99.3 7E-12 2.4E-16 124.1 11.1 120 457-579 14-138 (220)
116 1xeu_A Internalin C; cellular 99.3 3.9E-12 1.3E-16 129.7 9.3 145 449-604 36-181 (263)
117 3e6j_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 123.5 11.9 151 456-661 21-173 (229)
118 2xot_A Amphoterin-induced prot 99.3 2.8E-12 9.7E-17 137.3 8.1 168 457-659 21-201 (361)
119 2v70_A SLIT-2, SLIT homolog 2 99.3 9.4E-12 3.2E-16 123.2 9.2 74 457-532 14-90 (220)
120 2ell_A Acidic leucine-rich nuc 99.3 7.2E-12 2.5E-16 118.3 7.7 127 451-604 21-156 (168)
121 2v9t_B SLIT homolog 2 protein 99.2 2.3E-11 7.8E-16 120.4 10.8 126 454-580 32-163 (220)
122 3e6j_A Variable lymphocyte rec 99.2 1.1E-11 3.7E-16 123.6 7.7 129 595-732 40-170 (229)
123 2je0_A Acidic leucine-rich nuc 99.2 5.7E-12 2E-16 116.4 4.6 129 451-603 14-148 (149)
124 2v70_A SLIT-2, SLIT homolog 2 99.2 4.5E-11 1.5E-15 118.3 11.0 125 455-580 33-164 (220)
125 2ell_A Acidic leucine-rich nuc 99.2 2.1E-11 7E-16 115.2 7.5 126 426-555 24-158 (168)
126 3sb4_A Hypothetical leucine ri 99.2 3.7E-11 1.3E-15 126.9 9.5 278 426-728 25-328 (329)
127 4b8c_D Glucose-repressible alc 99.2 2.1E-12 7.3E-17 150.7 -0.9 113 466-604 213-325 (727)
128 2xot_A Amphoterin-induced prot 99.2 3E-11 1E-15 129.3 7.5 170 479-684 20-200 (361)
129 2je0_A Acidic leucine-rich nuc 99.1 2.3E-11 7.8E-16 112.3 5.4 103 426-532 17-122 (149)
130 1a9n_A U2A', U2A'; complex (nu 99.1 2.7E-11 9.3E-16 115.3 6.0 82 450-533 15-98 (176)
131 1w8a_A SLIT protein; signaling 99.1 1.3E-10 4.4E-15 112.3 9.6 120 457-579 11-136 (192)
132 2wfh_A SLIT homolog 2 protein 99.1 3.3E-10 1.1E-14 109.5 11.5 121 457-580 13-137 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.1 8.4E-11 2.9E-15 111.9 6.3 102 426-533 19-123 (176)
134 1ds9_A Outer arm dynein; leuci 99.1 2.5E-12 8.6E-17 125.1 -5.9 128 449-601 43-180 (198)
135 1ds9_A Outer arm dynein; leuci 99.0 8.4E-12 2.9E-16 121.4 -6.8 101 426-533 48-150 (198)
136 1w8a_A SLIT protein; signaling 98.9 1.5E-09 5.3E-14 104.7 7.9 123 479-638 10-141 (192)
137 2o6r_A Variable lymphocyte rec 98.9 6.9E-09 2.4E-13 98.6 11.5 121 457-580 10-135 (177)
138 2o6r_A Variable lymphocyte rec 98.9 4.9E-09 1.7E-13 99.6 10.1 103 426-532 28-133 (177)
139 2wfh_A SLIT homolog 2 protein 98.9 4.1E-09 1.4E-13 101.7 9.7 98 479-579 12-112 (193)
140 2r9u_A Variable lymphocyte rec 98.8 1.4E-08 4.6E-13 96.2 9.8 74 457-532 15-90 (174)
141 4fdw_A Leucine rich hypothetic 98.8 6.5E-08 2.2E-12 104.4 15.9 247 445-741 127-387 (401)
142 3g39_A Variable lymphocyte rec 98.8 1.7E-08 5.7E-13 95.2 9.5 75 456-532 11-87 (170)
143 4fdw_A Leucine rich hypothetic 98.8 6.5E-08 2.2E-12 104.4 15.3 163 405-579 114-281 (401)
144 2r9u_A Variable lymphocyte rec 98.7 2.6E-08 8.9E-13 94.2 8.2 80 454-533 33-115 (174)
145 3g39_A Variable lymphocyte rec 98.7 2.4E-08 8.3E-13 94.1 7.7 80 454-533 30-112 (170)
146 3sb4_A Hypothetical leucine ri 98.5 6.1E-08 2.1E-12 102.0 6.1 99 568-679 225-327 (329)
147 3un9_A NLR family member X1; l 98.4 7.9E-08 2.7E-12 102.7 3.3 107 426-532 72-192 (372)
148 3un9_A NLR family member X1; l 98.4 1.3E-08 4.6E-13 108.7 -2.8 62 453-514 71-140 (372)
149 2ifg_A High affinity nerve gro 98.4 6.8E-07 2.3E-11 94.7 9.9 84 450-533 27-113 (347)
150 2ra8_A Uncharacterized protein 98.4 4.4E-08 1.5E-12 103.8 0.3 137 587-732 164-318 (362)
151 4fs7_A Uncharacterized protein 98.3 3.4E-06 1.2E-10 91.0 14.2 277 426-731 71-376 (394)
152 2ifg_A High affinity nerve gro 98.3 7E-07 2.4E-11 94.6 8.5 72 460-532 14-89 (347)
153 2ra8_A Uncharacterized protein 98.2 9.2E-07 3.1E-11 93.7 5.4 138 450-604 135-288 (362)
154 4fs7_A Uncharacterized protein 98.1 2E-05 6.9E-10 84.9 13.8 231 472-726 157-393 (394)
155 3e4g_A ATP synthase subunit S, 98.0 2.6E-06 8.9E-11 79.3 3.0 88 623-712 61-154 (176)
156 3e4g_A ATP synthase subunit S, 97.9 6.2E-06 2.1E-10 76.7 3.3 84 647-732 61-150 (176)
157 4gt6_A Cell surface protein; l 97.9 0.00019 6.6E-09 77.1 15.6 276 428-732 66-368 (394)
158 1io0_A Tropomodulin; LRR prote 97.8 1.9E-05 6.5E-10 75.1 5.4 107 426-532 36-160 (185)
159 3rw6_A Nuclear RNA export fact 97.7 2.4E-05 8.3E-10 78.5 5.0 84 447-531 163-259 (267)
160 1io0_A Tropomodulin; LRR prote 97.7 6.8E-06 2.3E-10 78.3 0.1 119 444-580 26-162 (185)
161 4gt6_A Cell surface protein; l 97.6 0.00033 1.1E-08 75.2 13.0 303 405-731 65-388 (394)
162 4h09_A Hypothetical leucine ri 97.2 0.0026 9E-08 67.7 13.6 77 426-510 46-123 (379)
163 4h09_A Hypothetical leucine ri 96.9 0.0092 3.2E-07 63.4 13.9 117 404-530 46-165 (379)
164 1w5s_A Origin recognition comp 96.9 0.00099 3.4E-08 71.9 6.2 136 94-236 23-190 (412)
165 3rw6_A Nuclear RNA export fact 96.5 0.0019 6.6E-08 64.6 5.1 80 426-508 170-259 (267)
166 2qby_B CDC6 homolog 3, cell di 96.1 0.0071 2.4E-07 64.4 6.9 135 95-236 22-175 (384)
167 2qen_A Walker-type ATPase; unk 95.8 0.006 2.1E-07 63.9 4.7 132 94-236 13-175 (350)
168 2v1u_A Cell division control p 95.3 0.051 1.7E-06 57.6 9.6 136 94-236 20-178 (387)
169 2qby_A CDC6 homolog 1, cell di 94.8 0.022 7.6E-07 60.3 5.2 137 94-237 21-175 (386)
170 1fnn_A CDC6P, cell division co 94.8 0.06 2.1E-06 57.1 8.5 136 94-236 18-170 (389)
171 2fna_A Conserved hypothetical 94.7 0.039 1.3E-06 57.7 6.6 67 301-381 287-355 (357)
172 3rfe_A Platelet glycoprotein I 94.6 0.051 1.8E-06 47.7 6.2 53 458-512 12-67 (130)
173 1pgv_A TMD-1, tropomodulin TMD 94.3 0.054 1.8E-06 51.1 5.8 106 426-531 41-165 (197)
174 3rfe_A Platelet glycoprotein I 93.9 0.082 2.8E-06 46.4 5.8 52 480-533 11-65 (130)
175 1pgv_A TMD-1, tropomodulin TMD 92.6 0.084 2.9E-06 49.8 4.0 89 444-532 31-135 (197)
176 1njg_A DNA polymerase III subu 91.9 0.41 1.4E-05 46.3 8.5 42 195-236 124-167 (250)
177 2chg_A Replication factor C sm 91.3 0.94 3.2E-05 43.0 10.2 119 95-236 19-143 (226)
178 3te6_A Regulatory protein SIR3 88.4 0.57 2E-05 47.8 6.1 110 95-209 22-144 (318)
179 1sxj_B Activator 1 37 kDa subu 81.7 1.5 5.2E-05 44.6 5.6 42 195-236 105-148 (323)
180 1iqp_A RFCS; clamp loader, ext 68.3 3.5 0.00012 41.8 4.1 41 196-236 109-151 (327)
181 1jbk_A CLPB protein; beta barr 63.8 3.2 0.00011 38.0 2.5 40 95-136 24-65 (195)
182 2w58_A DNAI, primosome compone 58.2 4 0.00014 38.2 2.0 36 200-235 118-159 (202)
183 2z4s_A Chromosomal replication 50.9 11 0.00038 40.3 4.2 95 120-235 138-237 (440)
184 3u61_B DNA polymerase accessor 49.4 62 0.0021 32.4 9.6 115 95-237 28-148 (324)
185 1jr3_A DNA polymerase III subu 40.7 56 0.0019 33.4 7.8 42 195-236 117-160 (373)
186 2chq_A Replication factor C sm 40.1 36 0.0012 33.9 6.0 41 196-236 101-143 (319)
187 3h4m_A Proteasome-activating n 33.6 45 0.0016 32.6 5.4 16 95-110 19-34 (285)
188 3syl_A Protein CBBX; photosynt 31.8 76 0.0026 31.4 6.8 38 198-235 131-179 (309)
189 3n70_A Transport activator; si 28.8 1E+02 0.0035 26.5 6.3 37 199-235 78-116 (145)
190 3ec2_A DNA replication protein 27.7 28 0.00095 31.5 2.4 39 197-235 100-143 (180)
191 2zan_A Vacuolar protein sortin 27.0 1.8E+02 0.0062 30.6 9.0 43 195-237 225-283 (444)
192 2gkw_B Tumor necrosis factor r 25.5 47 0.0016 18.9 2.0 19 218-236 3-21 (26)
193 2p65_A Hypothetical protein PF 21.7 1.3E+02 0.0044 26.5 5.8 17 95-111 24-40 (187)
194 1sxj_D Activator 1 41 kDa subu 20.8 81 0.0028 31.8 4.6 41 196-236 132-174 (353)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.9e-34 Score=324.55 Aligned_cols=267 Identities=17% Similarity=0.208 Sum_probs=200.2
Q ss_pred ecchhhHHHHHHHhcCCCCCCCccccCcceehHHH---------HHHHhC--cccccccCCeeEEEEECCCC--CHHHHH
Q 045237 96 YESEKAIDTFFTTIMQPQSSESESESTSYKDALVG---------LQKAFN--SNHVKFYFDCRAWVRVSIQY--NFKKIL 162 (758)
Q Consensus 96 ~Gr~~~~~~i~~~L~~~~~~~~~~~~~~~~~~ivG---------a~~vy~--~~~~~~~F~~~~wv~vs~~~--~~~~i~ 162 (758)
|||++++++|.++|..... ..+++++|+| |++||+ |.+++.+|++++||+|++.+ ++.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~------~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 204 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD------LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLF 204 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT------SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC------CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHH
Confidence 5999999999999965321 1233444444 899998 78999999999999999985 899999
Q ss_pred HHHHHhhCCCCC---Ccc-ccCchhhhHHHHHHHhcCCC-eEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCCccc
Q 045237 163 DDIIKSVMPASG---LSE-IIGKDYTLKKSILRDYLTNK-KYMTVLDDIYHDMIWNDLREALPDYQNGSRVLITVVDPDI 237 (758)
Q Consensus 163 ~~i~~~l~~~~~---~~~-~~~~~~~~~~~~l~~~L~~k-r~LlVLDDvw~~~~w~~l~~~~~~~~~gS~iivTTR~~~v 237 (758)
++|+++++.... .+. +..+.+.++ ..+++.|++| ||||||||||+..++ .+.. .+||+||||||++.|
T Consensus 205 ~~il~~l~~~~~~~~~~~~~~~~~~~l~-~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 205 TDILLMLKSEDDLLNFPSVEHVTSVVLK-RMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEI 277 (549)
T ss_dssp HHHHHHHTTTSCCTTCCCCTTCCHHHHH-HHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGG
T ss_pred HHHHHHHhcCcccccccccccccHHHHH-HHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHH
Confidence 999999987532 110 112445678 8999999996 999999999998765 2221 179999999999877
Q ss_pred ---------------cCc---ccc-----------cchhhhcccc-----------ccccccccccccccchhhhhhccc
Q 045237 238 ---------------LTS---FEL-----------ENGEKIGSDS-----------VLVGGPLFRIKYEGWQFFLLYCGC 277 (758)
Q Consensus 238 ---------------L~~---~~l-----------~~~~~i~~~i-----------~~~g~~L~~~~~~~W~~~~~~~~l 277 (758)
|++ |+| +++.+++.+| +++|+.|+.. .|..+.. +
T Consensus 278 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~~~---l 351 (549)
T 2a5y_B 278 SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKMAQ---L 351 (549)
T ss_dssp GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHHHH---H
T ss_pred HHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc---hHHHHHH---h
Confidence 222 333 2334455555 7788888733 2433300 3
Q ss_pred cchhhhhhcCCCchhHHHhhccCCcchhHHHHHh-----------HhcccCCCceeeHhHHHHHHHHc--CCCC-----C
Q 045237 278 KSLESQMMEMENEPTALLFCSIFELPLYLKFCCF-----------YLCVFYGNLEISTRQLYQLWMAE--GFVA-----H 339 (758)
Q Consensus 278 ~~l~~~~~~~~~~i~~~L~~Sy~~L~~~~k~cFl-----------~~a~Fp~~~~i~~~~Li~~w~a~--g~i~-----~ 339 (758)
....+.. ...++.++|++||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+. .
T Consensus 352 ~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~ 425 (549)
T 2a5y_B 352 NNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ 425 (549)
T ss_dssp HHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC
T ss_pred HHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCC
Confidence 3222221 2478999999999999999999999 999999999999 8999999 9996 3
Q ss_pred ChHHHHHHHHHHHHhCccccccccCCCCCeeEEEcCHHHHHHHHHHhcccCe
Q 045237 340 NSEANAEEYLKELISRGLIKVGKRSAGGKIKTCSVPSSVWARLVVLAAKMKF 391 (758)
Q Consensus 340 ~~~~~~~~~~~~Lv~~sll~~~~~~~~~~~~~~~mHdli~dla~~i~~~e~~ 391 (758)
..+++++ ||++|+++||++....+ ...+|+|||++|++|+.++.++++
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 3677777 99999999999987643 335899999999999999887653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=7e-28 Score=285.35 Aligned_cols=336 Identities=18% Similarity=0.163 Sum_probs=154.8
Q ss_pred CceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCC-CCCccccCcc-cc
Q 045237 404 RTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLD-QFPSGIENLF-LL 479 (758)
Q Consensus 404 ~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~l~-~L 479 (758)
..++++.+..+......+..+. ++|++|.+.++.... .++...+.++++|++|++++|.+. .+|..++++. +|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~---~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L 370 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG---ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE---ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTC
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC---cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCC
Confidence 4555666553332223333343 566666666555432 233344566666666666666554 4554444443 33
Q ss_pred cEEec--------------------------cCCCCc-ccCccccCCCCCcEEEccCCcCc-ccchhhcccccCcEEEcC
Q 045237 480 RCLKL--------------------------DVPSLK-SLPSSLCNLLNLQTLDMPSSYID-HTPEDIWNMHKLMHLNFG 531 (758)
Q Consensus 480 r~L~L--------------------------~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~ 531 (758)
++|++ ++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|+++
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450 (768)
T ss_dssp SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred cEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence 33333 333333 34444445555555555555443 334444445555555444
Q ss_pred CC---CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCC
Q 045237 532 CI---TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKG 608 (758)
Q Consensus 532 ~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 608 (758)
++ ...|..++.+++|+.|++.++...+ ..|..++.+++|+.|++++| ...+.+|..+..+++|+.|++++
T Consensus 451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~---- 523 (768)
T 3rgz_A 451 LNMLEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNN--RLTGEIPKWIGRLENLAILKLSN---- 523 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSS--CCCSCCCGGGGGCTTCCEEECCS----
T ss_pred CCcccCcCCHHHcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCC--ccCCcCChHHhcCCCCCEEECCC----
Confidence 31 1233334444444444444444333 34444444444555554444 23334444444444444444444
Q ss_pred cccccc---cC-CcCCCCCCccEEEEeeccCCCCCccc------------------------------------------
Q 045237 609 WQLSQM---IL-SEYQFPPSLTQLSLSNTELKEDPMPT------------------------------------------ 642 (758)
Q Consensus 609 ~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~~~~~~------------------------------------------ 642 (758)
+.+ +| .+..+ ++|+.|++++|.+.+.+|..
T Consensus 524 ---N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 524 ---NSFSGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ---SCCEEECCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ---CcccCcCCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 222 34 44444 55555555554443332221
Q ss_pred ----------------------------ccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcc
Q 045237 643 ----------------------------LEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGAR 694 (758)
Q Consensus 643 ----------------------------l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~ 694 (758)
++.+++|+.|+|++|.+.|.+|.. ++.+++|+.|+|++|.....+|..++
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~--l~~l~~L~~L~Ls~N~l~g~ip~~l~ 677 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE--IGSMPYLFILNLGHNDISGSIPDEVG 677 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG--GGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH--HhccccCCEEeCcCCccCCCCChHHh
Confidence 222344555555555555444433 34555555556555554345555555
Q ss_pred cccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc---------------------------HHHHHHhhccccCcc
Q 045237 695 AMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ---------------------------PELRKKLRAYEDMER 747 (758)
Q Consensus 695 ~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~---------------------------~~~~~~~~~~~~~~~ 747 (758)
.+++|+.|++++|...+.+|..+.++++|+.|++++|+ ..+. .|.. +.+++
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~-~~~~~ 755 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP-SNADG 755 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS-CC---
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC-CccCC
Confidence 66666666666665555566666666666666655542 0111 4555 67899
Q ss_pred eeeeecCCCC
Q 045237 748 RYDIQMYPYG 757 (758)
Q Consensus 748 ~~ki~hip~~ 757 (758)
|++|+|+|..
T Consensus 756 ~~~~~~~~~~ 765 (768)
T 3rgz_A 756 YAHHQRSHHH 765 (768)
T ss_dssp ----------
T ss_pred CCCCCCcccc
Confidence 9999999863
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=3.5e-27 Score=270.55 Aligned_cols=246 Identities=15% Similarity=0.163 Sum_probs=185.8
Q ss_pred ecchhhHHHHHHHhcCCCCCCCccccCcceehHHH---------HHHHhCcccccccCCe-eEEEEECCCCCHHHHHHHH
Q 045237 96 YESEKAIDTFFTTIMQPQSSESESESTSYKDALVG---------LQKAFNSNHVKFYFDC-RAWVRVSIQYNFKKILDDI 165 (758)
Q Consensus 96 ~Gr~~~~~~i~~~L~~~~~~~~~~~~~~~~~~ivG---------a~~vy~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i 165 (758)
+||+++++++.++|.+... .++++|+| |+++|++.+++.+|+. ++||+|++.++...++..|
T Consensus 131 VGRe~eLeeL~elL~~~d~--------~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRP--------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCS--------SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCC--------CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 5999999999999975321 23444444 7999998899999987 8999999999998988888
Q ss_pred HHhhCCCC---CCccc-----cCchhhhHHHHHHHhc---CCCeEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCC
Q 045237 166 IKSVMPAS---GLSEI-----IGKDYTLKKSILRDYL---TNKKYMTVLDDIYHDMIWNDLREALPDYQNGSRVLITVVD 234 (758)
Q Consensus 166 ~~~l~~~~---~~~~~-----~~~~~~~~~~~l~~~L---~~kr~LlVLDDvw~~~~w~~l~~~~~~~~~gS~iivTTR~ 234 (758)
++.+.... ....+ ..+.+++. ..+++.| .+||+||||||||+.++|+.+. +||+||||||+
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~-e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd 274 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHH-HHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSC
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHH-HHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccC
Confidence 87543210 00000 11345556 7777765 7899999999999999998762 69999999999
Q ss_pred cccc-----------C---------c---ccc------cchhhhcccc--------cccccccc-cc-ccccchhhhhhc
Q 045237 235 PDIL-----------T---------S---FEL------ENGEKIGSDS--------VLVGGPLF-RI-KYEGWQFFLLYC 275 (758)
Q Consensus 235 ~~vL-----------~---------~---~~l------~~~~~i~~~i--------~~~g~~L~-~~-~~~~W~~~~~~~ 275 (758)
+.++ . + |+| ....++..++ +++|+.|+ +. +.++|...
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 8862 1 1 333 1112222222 77888888 42 45667654
Q ss_pred cccchhhhhhcCCCchhHHHhhccCCcchhH-HHHHhHhcccCCCceeeHhHHHHHHHHcCCCCCChHHHHHHHHHHHHh
Q 045237 276 GCKSLESQMMEMENEPTALLFCSIFELPLYL-KFCCFYLCVFYGNLEISTRQLYQLWMAEGFVAHNSEANAEEYLKELIS 354 (758)
Q Consensus 276 ~l~~l~~~~~~~~~~i~~~L~~Sy~~L~~~~-k~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~Lv~ 354 (758)
- ...+..+|++||+.||+++ |+||+|||+||+++.|+++.++.+|+++|. +.++.+|++|++
T Consensus 351 -~----------~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe------edAe~~L~eLvd 413 (1221)
T 1vt4_I 351 -N----------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------SDVMVVVNKLHK 413 (1221)
T ss_dssp -S----------CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS------HHHHHHHHHHHT
T ss_pred -C----------hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH------HHHHHHHHHHHh
Confidence 1 2578999999999999999 999999999999999999999999999872 358899999999
Q ss_pred CccccccccCCCCCeeEEEcCHHHHHHHH
Q 045237 355 RGLIKVGKRSAGGKIKTCSVPSSVWARLV 383 (758)
Q Consensus 355 ~sll~~~~~~~~~~~~~~~mHdli~dla~ 383 (758)
+|||+... ...+|+|||++++++.
T Consensus 414 RSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 414 YSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred hCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 99999842 1247999999999663
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.7e-25 Score=249.12 Aligned_cols=313 Identities=18% Similarity=0.192 Sum_probs=230.9
Q ss_pred CCCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCC-CccccCccc
Q 045237 402 ELRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQF-PSGIENLFL 478 (758)
Q Consensus 402 ~~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~ 478 (758)
.+..+++|.+..+......+..+. ++|+.|.+.++.... .+.+..|..+++|++|++++|.+..+ |..++++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~---~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL---VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC---EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc---eECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 456788888885544444455555 888888888876532 34456788889999999999888754 778888999
Q ss_pred ccEEeccCCCCcc-cCcc--ccCCCCCcEEEccCCcCccc-chh-hcccccCcEEEcCCCC---CCCCCCCcc--ccCcc
Q 045237 479 LRCLKLDVPSLKS-LPSS--LCNLLNLQTLDMPSSYIDHT-PED-IWNMHKLMHLNFGCIT---LPAPPENYC--SSLKN 548 (758)
Q Consensus 479 Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~l~~l-p~~-i~~l~~L~~L~l~~~~---~~~~~~~~l--~~L~~ 548 (758)
|++|++++|.++. .|.. +.++++|++|++++|.+..+ |.. +.++++|++|+++++. ..+..+..+ .+|+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 9999999988874 4444 78889999999999988777 554 7888999999887731 233444444 56777
Q ss_pred cccccccCCCCCCcc--------ccCCCCCCCeEEEEecCchhhhhHHHHhhcc---C----------------------
Q 045237 549 LIFISALHPCSCTPD--------TLGRLPNVQTLKIYGDLSSYQSGLSKSLREL---L---------------------- 595 (758)
Q Consensus 549 L~l~~~~~~~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~---~---------------------- 595 (758)
|++.++.... ..+. .+..+++|+.|++++| ...+..+..+... +
T Consensus 185 L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 185 LRLSSITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EECTTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred cccccCcccc-cchhhccccccccccccceeeeEecCCC--cccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 7766665433 1111 2335678889999888 4555555555443 4
Q ss_pred --------------CCceEEeeecCCCcccccc---cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEecc
Q 045237 596 --------------KLESLKLVNKSKGWQLSQM---IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQN 657 (758)
Q Consensus 596 --------------~L~~L~L~~~~~~~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n 657 (758)
+|+.|++++ +.+ .| ++..+ ++|+.|++++|.+.+..+..++.+++|++|++++|
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~-------n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSK-------SKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCS-------SCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccCcccccccccccCceEEEecC-------ccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 455555544 333 56 77888 99999999999998877889999999999999999
Q ss_pred ccCCceeEEeCCCCCccccEEeeccCCCcCce-EECcccccccceeeEeccccCCCCch-hhcCCCCCcEEEEecCc
Q 045237 658 SYSGRKLACVGSGGFPKLKILHLKSMFWLEEW-TMGARAMTKLESLIINPCAYLKKLPE-ELWRIESFRKLELHWPQ 732 (758)
Q Consensus 658 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~sL~~L~l~~c~ 732 (758)
.+.+..+.. +..+++|+.|+|++|. +..+ |..+..+++|++|++++|. ++.+|. .+..+++|+.|++++||
T Consensus 334 ~l~~~~~~~--~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 334 FLGSIDSRM--FENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCCEECGGG--GTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCcChhH--hcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 886543333 6789999999999986 5555 6678899999999999998 555665 56899999999999865
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=9.5e-26 Score=267.06 Aligned_cols=312 Identities=19% Similarity=0.132 Sum_probs=227.0
Q ss_pred CCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCC--------------
Q 045237 403 LRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVL-------------- 466 (758)
Q Consensus 403 ~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l-------------- 466 (758)
..++++|.+..+......+. +. ++|+.|.+.++... ...+..+.++++|++|++++|.+
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~ 273 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 273 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC----SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC----CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCE
Confidence 34455555553322222222 33 55666666555543 22344455555555555555544
Q ss_pred --------C-CCCccccCc-ccccEEeccCCCCc-ccCccccCCCCCcEEEccCCcCc-ccchh-hcccccCcEEEcCCC
Q 045237 467 --------D-QFPSGIENL-FLLRCLKLDVPSLK-SLPSSLCNLLNLQTLDMPSSYID-HTPED-IWNMHKLMHLNFGCI 533 (758)
Q Consensus 467 --------~-~lp~~i~~l-~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~-i~~l~~L~~L~l~~~ 533 (758)
. .+|..+..+ ++|++|++++|.++ .+|..++++++|++|++++|.+. .+|.. +.++++|++|+++++
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 3 455555543 66777777776666 56666777777777777777654 66655 677777777777662
Q ss_pred C---CCCCCCCccc-cCcccccccccCCCCCCccccCC--CCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC
Q 045237 534 T---LPAPPENYCS-SLKNLIFISALHPCSCTPDTLGR--LPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK 607 (758)
Q Consensus 534 ~---~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 607 (758)
. .+|..+..++ +|+.|++.++...+ ..|..+.. +++|+.|++++| ...+.+|..+..+++|+.|++++
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~-~~~~~~~~~~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~--- 427 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSG-PILPNLCQNPKNTLQELYLQNN--GFTGKIPPTLSNCSELVSLHLSF--- 427 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEE-ECCTTTTCSTTCCCCEEECCSS--EEEEECCGGGGGCTTCCEEECCS---
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCC-CcChhhhhcccCCccEEECCCC--ccccccCHHHhcCCCCCEEECcC---
Confidence 1 4566666665 77777777665544 45666655 778888888888 56667888889999999999988
Q ss_pred Ccccccc---cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccC
Q 045237 608 GWQLSQM---IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSM 683 (758)
Q Consensus 608 ~~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~ 683 (758)
+.+ +| .+..+ ++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+..+.. +..+++|+.|+|++|
T Consensus 428 ----N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 428 ----NYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNN 500 (768)
T ss_dssp ----SEEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSS
T ss_pred ----CcccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH--HhcCCCCCEEEccCC
Confidence 444 67 88888 99999999999998899999999999999999999998876654 678899999999999
Q ss_pred CCcCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 684 FWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 684 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.....+|..++.+++|+.|++++|.....+|..+.++++|+.|++++|+
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 8666889899999999999999999877899999999999999999875
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=3e-25 Score=248.61 Aligned_cols=297 Identities=20% Similarity=0.176 Sum_probs=240.8
Q ss_pred cccccccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCC-CccccCcccccEEeccCCCCcccCcc-cc
Q 045237 420 SLEHIDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQF-PSGIENLFLLRCLKLDVPSLKSLPSS-LC 497 (758)
Q Consensus 420 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~ 497 (758)
.+..+.++++.|.+.++... ...+..|.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|.. +.
T Consensus 26 ip~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 26 VPEGIPTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp CCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred CCCCCCCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 44444478999999988875 44567889999999999999999865 78899999999999999999988875 68
Q ss_pred CCCCCcEEEccCCcCccc-chhhcccccCcEEEcCCC---CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCe
Q 045237 498 NLLNLQTLDMPSSYIDHT-PEDIWNMHKLMHLNFGCI---TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQT 573 (758)
Q Consensus 498 ~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 573 (758)
++++|++|+|++|.+..+ |..+.++++|++|+++++ ...+..+..+++|++|++.++.... ..+..+..+++|+.
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIV 180 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcE
Confidence 999999999999988877 566899999999999873 1235578899999999998887655 45567899999999
Q ss_pred EEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceE
Q 045237 574 LKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVL 652 (758)
Q Consensus 574 L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 652 (758)
|+++++ ......+..+..+++|+.|+++++.. ..-+| ..... .+|+.|++++|.+....+..+..+++|+.|
T Consensus 181 L~l~~n--~i~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 181 LRLRHL--NINAIRDYSFKRLYRLKVLEISHWPY----LDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp EEEESC--CCCEECTTCSCSCTTCCEEEEECCTT----CCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred EeCCCC--cCcEeChhhcccCcccceeeCCCCcc----ccccCcccccC-ccccEEECcCCcccccCHHHhcCccccCee
Confidence 999998 34444455788899999999998310 01144 55555 699999999999876555688999999999
Q ss_pred EEeccccCCceeEEeCCCCCccccEEeeccCCCcCce-EECcccccccceeeEeccccCCCCch-hhcCCCCCcEEEEec
Q 045237 653 KLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEW-TMGARAMTKLESLIINPCAYLKKLPE-ELWRIESFRKLELHW 730 (758)
Q Consensus 653 ~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~sL~~L~l~~ 730 (758)
+|++|.+.+..+.. +..+++|+.|+|++|. +..+ |..+..+++|+.|++++|. +..+|. .+..+++|+.|++++
T Consensus 254 ~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 254 NLSYNPISTIEGSM--LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp ECCSSCCCEECTTS--CTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCS
T ss_pred ECCCCcCCccChhh--ccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccC
Confidence 99999876433222 6788999999999986 5544 5678899999999999997 555654 578899999999998
Q ss_pred Cc
Q 045237 731 PQ 732 (758)
Q Consensus 731 c~ 732 (758)
||
T Consensus 330 N~ 331 (477)
T 2id5_A 330 NP 331 (477)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 7
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=4.1e-25 Score=250.31 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=33.9
Q ss_pred ccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchh-hcCCCCCcEEEEecCc
Q 045237 673 PKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEE-LWRIESFRKLELHWPQ 732 (758)
Q Consensus 673 ~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~sL~~L~l~~c~ 732 (758)
++|+.|++++|. ++.+|..+..+++|+.|++++|. ++.+|.. +..+++|+.|++++||
T Consensus 421 ~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 421 PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 355555555543 44555555566666666666665 4456654 5666666666666655
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=3.7e-25 Score=256.02 Aligned_cols=308 Identities=16% Similarity=0.193 Sum_probs=252.7
Q ss_pred CCceeEEEeeCCCCccccccccc--cccceEEecccc-CCcchhhhhHHHhccC------CeeEEEEcCCCCCCCCCc--
Q 045237 403 LRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALE-SDHSALLDCENICKKF------KLLRVLNMGSLVLDQFPS-- 471 (758)
Q Consensus 403 ~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~-~~~~~~~~~~~~~~~l------~~Lr~L~L~~~~l~~lp~-- 471 (758)
...+++|.+..+......+..+. ++|+.|.+.++. ... ...+..+.++ ++|++|++++|.++.+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~---~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG---EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH---HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc---ccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 46788999985554445666666 899999999887 531 0345555554 999999999999999999
Q ss_pred cccCcccccEEeccCCCCc-ccCccccCCCCCcEEEccCCcCcccchhhccccc-CcEEEcCC--CCCCCCCCCccc--c
Q 045237 472 GIENLFLLRCLKLDVPSLK-SLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHK-LMHLNFGC--ITLPAPPENYCS--S 545 (758)
Q Consensus 472 ~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~-L~~L~l~~--~~~~~~~~~~l~--~ 545 (758)
.++++++|++|++++|.++ .+| .++++++|++|++++|.+..+|..+.++++ |++|++++ ...+|..+..++ +
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 9999999999999999999 999 999999999999999999999999999999 99999987 346777776655 8
Q ss_pred CcccccccccCCCCCCccccC-------CCCCCCeEEEEecCchhhhhHHHH-hhccCCCceEEeeecCCCcccccc--c
Q 045237 546 LKNLIFISALHPCSCTPDTLG-------RLPNVQTLKIYGDLSSYQSGLSKS-LRELLKLESLKLVNKSKGWQLSQM--I 615 (758)
Q Consensus 546 L~~L~l~~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~~~~~~l--l 615 (758)
|+.|++.++...+ ..|..++ .+++|+.|++++|. . ..+|.. +..+++|+.|++++ +.+ +
T Consensus 404 L~~L~Ls~N~l~~-~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l-~~lp~~~~~~l~~L~~L~Ls~-------N~l~~i 472 (636)
T 4eco_A 404 MSAIDFSYNEIGS-VDGKNFDPLDPTPFKGINVSSINLSNNQ--I-SKFPKELFSTGSPLSSINLMG-------NMLTEI 472 (636)
T ss_dssp EEEEECCSSCTTT-TTTCSSCTTCSSCCCCCCEEEEECCSSC--C-CSCCTHHHHTTCCCSEEECCS-------SCCSBC
T ss_pred cCEEECcCCcCCC-cchhhhcccccccccCCCCCEEECcCCc--c-CcCCHHHHccCCCCCEEECCC-------CCCCCc
Confidence 9999998887766 6777777 78899999999983 3 355554 45689999999998 444 5
Q ss_pred C-CcCCCC-------CCccEEEEeeccCCCCCccccc--CCCCCceEEEeccccCCceeEEeCCCCCccccEEeecc---
Q 045237 616 L-SEYQFP-------PSLTQLSLSNTELKEDPMPTLE--KLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKS--- 682 (758)
Q Consensus 616 p-~~~~l~-------~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~--- 682 (758)
| ...... ++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+.+ .+.. +..+++|+.|+|++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~--~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ--PLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG--GGGCSSCCEEECCSCBC
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh--hhcCCCCCEEECCCCcc
Confidence 5 332210 39999999999987 6777776 99999999999999987 4443 56799999999954
Q ss_pred ---CCCcCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 683 ---MFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 683 ---~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
|.....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++||
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 444567888899999999999999995 89998765 899999999996
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=2e-25 Score=258.22 Aligned_cols=311 Identities=16% Similarity=0.172 Sum_probs=252.1
Q ss_pred CCCceeEEEeeCCCCccc-----------------ccccc---c-cccceEEeccccCCcchhhhhHHHhccCCeeEEEE
Q 045237 402 ELRTIKRFAVPKNLTKFV-----------------SLEHI---D-TYLHSLQNFALESDHSALLDCENICKKFKLLRVLN 460 (758)
Q Consensus 402 ~~~~~r~Ls~~~~~~~~~-----------------~~~~~---~-~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~ 460 (758)
....++.|.+..+..... .+..+ . ++|+.|.+.++... ...+..|.++++|++|+
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL----TKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC----SSCCTTTTTCSSCCEEE
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC----ccChHHHhcCCCCCEEE
Confidence 456788888885544331 33332 3 78999999988764 33457788999999999
Q ss_pred cCCCC-CC--CCCccccCc------ccccEEeccCCCCcccCc--cccCCCCCcEEEccCCcCc-ccchhhcccccCcEE
Q 045237 461 MGSLV-LD--QFPSGIENL------FLLRCLKLDVPSLKSLPS--SLCNLLNLQTLDMPSSYID-HTPEDIWNMHKLMHL 528 (758)
Q Consensus 461 L~~~~-l~--~lp~~i~~l------~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L 528 (758)
+++|. ++ .+|..++++ ++|++|++++|.++.+|. .++++++|++|++++|.+. .+| .+.++++|++|
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 99998 87 489888887 999999999999999998 8999999999999999888 899 89999999999
Q ss_pred EcCC--CCCCCCCCCcccc-CcccccccccCCCCCCccccCCCC--CCCeEEEEecCchhhhhHHHHhh-------ccCC
Q 045237 529 NFGC--ITLPAPPENYCSS-LKNLIFISALHPCSCTPDTLGRLP--NVQTLKIYGDLSSYQSGLSKSLR-------ELLK 596 (758)
Q Consensus 529 ~l~~--~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~l~~~l~-------~~~~ 596 (758)
++++ ...+|..+..+++ |+.|++.++... .+|..++.++ +|+.|++++| ...+..|..+. .+++
T Consensus 359 ~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYN--EIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp ECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSS--CTTTTTTCSSCTTCSSCCCCCC
T ss_pred ECCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCC--cCCCcchhhhcccccccccCCC
Confidence 9987 3477888999999 999998887754 4777777655 8999999998 56666777777 7789
Q ss_pred CceEEeeecCCCcccccc--cC-C-cCCCCCCccEEEEeeccCCCCCccc-ccC-------CCCCceEEEeccccCCcee
Q 045237 597 LESLKLVNKSKGWQLSQM--IL-S-EYQFPPSLTQLSLSNTELKEDPMPT-LEK-------LPHLLVLKLKQNSYSGRKL 664 (758)
Q Consensus 597 L~~L~L~~~~~~~~~~~l--lp-~-~~~l~~~L~~L~L~~~~l~~~~~~~-l~~-------l~~L~~L~L~~n~~~~~~~ 664 (758)
|+.|++++ +.+ +| . +..+ ++|+.|+|++|.+. .+|.. +.. +++|+.|+|++|.+. ..+
T Consensus 435 L~~L~Ls~-------N~l~~lp~~~~~~l-~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 435 VSSINLSN-------NQISKFPKELFSTG-SPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp EEEEECCS-------SCCCSCCTHHHHTT-CCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred CCEEECcC-------CccCcCCHHHHccC-CCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence 99999998 555 56 3 4456 99999999999987 44443 332 339999999999887 344
Q ss_pred EEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEe------ccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 665 ACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIIN------PCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 665 ~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~------~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.......+++|+.|+|++|. +..+|..+..+++|+.|+++ +|...+.+|..+.++++|++|++++|.
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred hhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 33201389999999999987 66699999999999999995 466677899999999999999999997
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=1.7e-25 Score=280.32 Aligned_cols=264 Identities=16% Similarity=0.247 Sum_probs=196.2
Q ss_pred eecchhhHHHHHHHhcCCCCCCCccccCcceehHHH---------HHHHhCcccc-cccC-CeeEEEEECCCCC--HHHH
Q 045237 95 VYESEKAIDTFFTTIMQPQSSESESESTSYKDALVG---------LQKAFNSNHV-KFYF-DCRAWVRVSIQYN--FKKI 161 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~~~~~~~~~~~~~ivG---------a~~vy~~~~~-~~~F-~~~~wv~vs~~~~--~~~i 161 (758)
++||+++++++.++|..... +.++++|+| |+++|++.++ ..+| +.+.||++++.++ ....
T Consensus 126 ~vgR~~~~~~l~~~l~~~~~-------~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKLNG-------EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTTTT-------SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred eccHHHHHHHHHHHHhhccC-------CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 45999999999999965321 223343333 7999997544 5556 6677999998654 4455
Q ss_pred HHHHHHhhCCCCCCcc-ccCchhhhHHHHHHHhcCCC--eEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCCcccc
Q 045237 162 LDDIIKSVMPASGLSE-IIGKDYTLKKSILRDYLTNK--KYMTVLDDIYHDMIWNDLREALPDYQNGSRVLITVVDPDIL 238 (758)
Q Consensus 162 ~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~L~~k--r~LlVLDDvw~~~~w~~l~~~~~~~~~gS~iivTTR~~~vL 238 (758)
++.++..+........ ...+.+++. ..++..+.+| |+||||||||+..+|+.+ ++||+||||||++.+.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAK-DRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHH-HHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHH-HHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 7778888876432111 123677788 8999999887 999999999998877643 6799999999999773
Q ss_pred C----------------c---ccc---------cchhhhcccc-----------ccccccccccccccchhhhhhccccc
Q 045237 239 T----------------S---FEL---------ENGEKIGSDS-----------VLVGGPLFRIKYEGWQFFLLYCGCKS 279 (758)
Q Consensus 239 ~----------------~---~~l---------~~~~~i~~~i-----------~~~g~~L~~~~~~~W~~~~~~~~l~~ 279 (758)
. + |+| +++.+++.+| +++|+.|+... ..|... ++.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~-----l~~ 344 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYY-----LRQ 344 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHH-----HHH
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHH-----HHH
Confidence 1 1 222 2333444444 77888887333 468777 555
Q ss_pred hhhhhh-------cCC-CchhHHHhhccCCcchhHHHHHhHhcccCCCceeeHhHHHHHHHHcCCCCCChHHHHHHHHHH
Q 045237 280 LESQMM-------EME-NEPTALLFCSIFELPLYLKFCCFYLCVFYGNLEISTRQLYQLWMAEGFVAHNSEANAEEYLKE 351 (758)
Q Consensus 280 l~~~~~-------~~~-~~i~~~L~~Sy~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~ 351 (758)
+..... ... ..+..++.+||+.||+++|+||+|||+||+++.|+++.++.+|.++ ++.++.++++
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~ 417 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQE 417 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHH
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHH
Confidence 543321 011 4689999999999999999999999999999999999999999665 4578999999
Q ss_pred HHhCccccccccCCCCCeeEEEcCHHHHHHHHHHhccc
Q 045237 352 LISRGLIKVGKRSAGGKIKTCSVPSSVWARLVVLAAKM 389 (758)
Q Consensus 352 Lv~~sll~~~~~~~~~~~~~~~mHdli~dla~~i~~~e 389 (758)
|+++||++... ++...+|+||+++|++++..+.++
T Consensus 418 L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 418 FVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999765 344467999999999999987754
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1e-24 Score=256.88 Aligned_cols=308 Identities=17% Similarity=0.160 Sum_probs=246.7
Q ss_pred CCceeEEEeeCCCCccccccccc--cccceEEecccc-CCcchhhhhHHHh-------ccCCeeEEEEcCCCCCCCCCc-
Q 045237 403 LRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALE-SDHSALLDCENIC-------KKFKLLRVLNMGSLVLDQFPS- 471 (758)
Q Consensus 403 ~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~-~~~~~~~~~~~~~-------~~l~~Lr~L~L~~~~l~~lp~- 471 (758)
...++.|.+..+......+..+. ++|+.|.+.++. ... ...+..+ ..+++|+.|++++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg---~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA---AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH---HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc---ccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 46788999985554444566666 899999999886 432 0233333 445599999999999999999
Q ss_pred -cccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhccccc-CcEEEcCC--CCCCCCCCCcccc--
Q 045237 472 -GIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHK-LMHLNFGC--ITLPAPPENYCSS-- 545 (758)
Q Consensus 472 -~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~-L~~L~l~~--~~~~~~~~~~l~~-- 545 (758)
.++++++|++|+|++|.++.+| .++++++|+.|+|++|.+..+|..+.++++ |++|++++ ...+|..+..++.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSC
T ss_pred hhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCC
Confidence 9999999999999999999999 999999999999999999999999999999 99999987 3466776766654
Q ss_pred CcccccccccCCCCCCc---cccC--CCCCCCeEEEEecCchhhhhHHHHh-hccCCCceEEeeecCCCcccccc--cC-
Q 045237 546 LKNLIFISALHPCSCTP---DTLG--RLPNVQTLKIYGDLSSYQSGLSKSL-RELLKLESLKLVNKSKGWQLSQM--IL- 616 (758)
Q Consensus 546 L~~L~l~~~~~~~~~~~---~~l~--~l~~L~~L~l~~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~~~~~~l--lp- 616 (758)
|+.|++.++...+ ..| ..++ .+++|+.|++++|. ...+|..+ ..+++|+.|+|++ +.+ +|
T Consensus 646 L~~L~Ls~N~l~g-~ip~l~~~l~~~~~~~L~~L~Ls~N~---L~~lp~~~~~~l~~L~~L~Ls~-------N~L~~ip~ 714 (876)
T 4ecn_A 646 MGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNE---IQKFPTELFATGSPISTIILSN-------NLMTSIPE 714 (876)
T ss_dssp EEEEECCSSCTTT-TSSSCSSCTTTCCCCCEEEEECCSSC---CCSCCHHHHHTTCCCSEEECCS-------CCCSCCCT
T ss_pred CCEEECcCCcCCC-ccccchhhhccccCCCcCEEEccCCc---CCccCHHHHccCCCCCEEECCC-------CcCCccCh
Confidence 9999988887654 222 2333 34589999999983 33666665 4789999999998 444 55
Q ss_pred CcCCCC-------CCccEEEEeeccCCCCCccccc--CCCCCceEEEeccccCCceeEEeCCCCCccccEEeecc-----
Q 045237 617 SEYQFP-------PSLTQLSLSNTELKEDPMPTLE--KLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKS----- 682 (758)
Q Consensus 617 ~~~~l~-------~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~----- 682 (758)
++.... ++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+.+ .+.. +..+++|+.|+|++
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~--l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ--PLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG--GGGCTTCCEEECCCCBCTT
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh--hhcCCCCCEEECCCCCCcc
Confidence 433321 39999999999987 6778887 99999999999999987 3333 56899999999987
Q ss_pred -CCCcCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 683 -MFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 683 -~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
|.....+|..++.+++|+.|+|++|.. +.+|..+. ++|+.|+|++||
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred cccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 444557888899999999999999985 99998765 799999999997
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=8.3e-25 Score=257.68 Aligned_cols=311 Identities=13% Similarity=0.130 Sum_probs=238.8
Q ss_pred CCCceeEEEeeCCCCcc-----------------cccccc---c-cccceEEeccccCCcchhhhhHHHhccCCeeEEEE
Q 045237 402 ELRTIKRFAVPKNLTKF-----------------VSLEHI---D-TYLHSLQNFALESDHSALLDCENICKKFKLLRVLN 460 (758)
Q Consensus 402 ~~~~~r~Ls~~~~~~~~-----------------~~~~~~---~-~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~ 460 (758)
...+++.|.+..+.... ..+..+ . ++|+.|.+.++... ...+..|.++++|+.|+
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~----~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM----TQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC----CSCCGGGGGCSSCCEEE
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC----ccChHHHhCCCCCCEEE
Confidence 45678888888544333 134443 3 78888888887654 23457788899999999
Q ss_pred cCCCC-CC--CCCccccCcc-------cccEEeccCCCCcccCc--cccCCCCCcEEEccCCcCcccchhhcccccCcEE
Q 045237 461 MGSLV-LD--QFPSGIENLF-------LLRCLKLDVPSLKSLPS--SLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHL 528 (758)
Q Consensus 461 L~~~~-l~--~lp~~i~~l~-------~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 528 (758)
|++|. ++ .+|..++++. +|++|++++|.++.+|. .++++++|++|+|++|.+..+| .+.++++|++|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL 600 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEE
Confidence 99997 77 4787777766 99999999999999998 8899999999999999888888 88889999999
Q ss_pred EcCC--CCCCCCCCCcccc-CcccccccccCCCCCCccccCCCCC--CCeEEEEecCchhhhhHH---HHhh--ccCCCc
Q 045237 529 NFGC--ITLPAPPENYCSS-LKNLIFISALHPCSCTPDTLGRLPN--VQTLKIYGDLSSYQSGLS---KSLR--ELLKLE 598 (758)
Q Consensus 529 ~l~~--~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~l~---~~l~--~~~~L~ 598 (758)
++++ ...+|..+..+++ |+.|++.++... .+|..++.++. |+.|++++|. ..+.+| ..+. .+.+|+
T Consensus 601 ~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~--l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNK--IGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp ECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSC--TTTTSSSCSSCTTTCCCCCEE
T ss_pred ECcCCccccchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCc--CCCccccchhhhccccCCCcC
Confidence 9887 3467777888888 999998877654 46777766654 8899999883 333222 2222 334889
Q ss_pred eEEeeecCCCcccccc--cC-Cc-CCCCCCccEEEEeeccCCCCCcccccC--------CCCCceEEEeccccCCceeEE
Q 045237 599 SLKLVNKSKGWQLSQM--IL-SE-YQFPPSLTQLSLSNTELKEDPMPTLEK--------LPHLLVLKLKQNSYSGRKLAC 666 (758)
Q Consensus 599 ~L~L~~~~~~~~~~~l--lp-~~-~~l~~~L~~L~L~~~~l~~~~~~~l~~--------l~~L~~L~L~~n~~~~~~~~~ 666 (758)
.|++++ +.+ +| ++ ..+ ++|+.|+|++|.+. .+|..+.. +++|+.|+|++|.+. ..+..
T Consensus 677 ~L~Ls~-------N~L~~lp~~~~~~l-~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 677 TVTLSY-------NEIQKFPTELFATG-SPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp EEECCS-------SCCCSCCHHHHHTT-CCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred EEEccC-------CcCCccCHHHHccC-CCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 999988 555 66 44 366 99999999999987 55554333 349999999999887 34433
Q ss_pred eCCCCCccccEEeeccCCCcCceEECcccccccceeeEec------cccCCCCchhhcCCCCCcEEEEecCc
Q 045237 667 VGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINP------CAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 667 ~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~------c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.....+++|+.|+|++|. +..+|..++.+++|+.|+|++ |.....+|..+.++++|+.|++++|+
T Consensus 747 l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp GSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred hhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 201378999999999986 667898899999999999987 55667899999999999999999997
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-24 Score=236.91 Aligned_cols=282 Identities=18% Similarity=0.200 Sum_probs=188.3
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccCc-cccCCCCCc
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQ 503 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~ 503 (758)
.+++.|.+.++... .++...|..+++|++|++++|.+..+| ..++.+++|++|++++|.++.+|. .++++++|+
T Consensus 45 ~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCCchh----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 66666666665554 344555666777777777777766544 366677777777777777665543 356677777
Q ss_pred EEEccCCcCcccchh-hcccccCcEEEcCCC--CCC-CCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEec
Q 045237 504 TLDMPSSYIDHTPED-IWNMHKLMHLNFGCI--TLP-APPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGD 579 (758)
Q Consensus 504 ~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~--~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 579 (758)
+|++++|.+..+|.. +.++++|++|+++++ ..+ |..++.+++|++|++.++.... . .++.+++|+.|+++++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c---ccccccccceeecccc
Confidence 777777777676665 366777777776652 122 3346666777777666655433 1 2334445555544444
Q ss_pred Cch----------------hhhhHHHHhhccCCCceEEeeecCCCcccccc--cCCcCCCCCCccEEEEeeccCCCCCcc
Q 045237 580 LSS----------------YQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--ILSEYQFPPSLTQLSLSNTELKEDPMP 641 (758)
Q Consensus 580 ~~~----------------~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~ 641 (758)
.-. ....++. ...++|+.|++++ +.+ .+++..+ ++|+.|++++|.+.+..|.
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~-------n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQH-------NNLTDTAWLLNY-PGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCS-------SCCCCCGGGGGC-TTCSEEECCSSCCCEEESG
T ss_pred cccccCCCCcceEEECCCCeeeeccc--cccccccEEECCC-------CCCcccHHHcCC-CCccEEECCCCcCCCcChh
Confidence 100 1111111 1234666666666 444 3467777 8999999999998777788
Q ss_pred cccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcCCC
Q 045237 642 TLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIE 721 (758)
Q Consensus 642 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 721 (758)
.+..+++|+.|++++|.+.+. +.. ...+++|+.|++++|. +..+|..+..+++|+.|++++|+ +..+| +..++
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~--~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~ 339 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVAL--NLY-GQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHH 339 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEE--ECS-SSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTC
T ss_pred HccccccCCEEECCCCcCccc--Ccc-cCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeC--chhhc
Confidence 889999999999998887652 222 4678999999999985 77888778889999999999998 55565 67789
Q ss_pred CCcEEEEecCc
Q 045237 722 SFRKLELHWPQ 732 (758)
Q Consensus 722 sL~~L~l~~c~ 732 (758)
+|+.|++++||
T Consensus 340 ~L~~L~l~~N~ 350 (390)
T 3o6n_A 340 TLKNLTLSHND 350 (390)
T ss_dssp CCSEEECCSSC
T ss_pred cCCEEEcCCCC
Confidence 99999999987
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.2e-24 Score=248.69 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=104.6
Q ss_pred eEEEeeCCCCccccccccccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCC-CccccCcccccEEecc
Q 045237 407 KRFAVPKNLTKFVSLEHIDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQF-PSGIENLFLLRCLKLD 485 (758)
Q Consensus 407 r~Ls~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~ 485 (758)
+++.+. +......+..+.++++.|.+.++... ...+..|.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 34 ~~l~ls-~~~L~~ip~~~~~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYS-NRNLTHVPKDLPPRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECT-TSCCCSCCTTSCTTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEcC-CCCCccCCCCCCCCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 556665 33322344444478888888888775 44556788888899999998888865 6778888899999999
Q ss_pred CCCCcccCccccCCCCCcEEEccCCcCcccc--hhhcccccCcEEEcCCCCCCCCCCCccccC--cccccccccC
Q 045237 486 VPSLKSLPSSLCNLLNLQTLDMPSSYIDHTP--EDIWNMHKLMHLNFGCITLPAPPENYCSSL--KNLIFISALH 556 (758)
Q Consensus 486 ~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L--~~L~l~~~~~ 556 (758)
+|.++.+|.. .+++|++|++++|.+..+| ..+.++++|++|+++++......+..+++| +.|++.++..
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred CCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 9888888877 7888999999988887764 678888889988887743333445555666 6666655543
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=246.81 Aligned_cols=304 Identities=14% Similarity=0.121 Sum_probs=191.9
Q ss_pred CceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccE
Q 045237 404 RTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRC 481 (758)
Q Consensus 404 ~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~ 481 (758)
..+++|.+..+......+..+. ++|++|.+.++... ...+..|.++++|++|++++|.++.+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccC----CcChHHhhcccCCCEEecCCCceeecCcc--ccCCccE
Confidence 4566666663333332223333 56666666666554 23345566666666666666666666554 5666666
Q ss_pred EeccCCCCcc--cCccccCCCCCcEEEccCCcCcccchhhcccccC--cEEEcCCC-----CCCCCCCCc----------
Q 045237 482 LKLDVPSLKS--LPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKL--MHLNFGCI-----TLPAPPENY---------- 542 (758)
Q Consensus 482 L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~-----~~~~~~~~~---------- 542 (758)
|++++|.++. +|..++++++|++|++++|.+.. ..+..+++| ++|+++++ ...|..+..
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 6666666653 45566666666666666665544 234555555 66555432 111222222
Q ss_pred ----------------cccCcccccc------------------------------------------------------
Q 045237 543 ----------------CSSLKNLIFI------------------------------------------------------ 552 (758)
Q Consensus 543 ----------------l~~L~~L~l~------------------------------------------------------ 552 (758)
+++|+.|++.
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 3333333322
Q ss_pred ---cccCCCCCCcccc-----CCCCCCCeEEEEecCchhhhhHH-HHh-------------------------hccCCCc
Q 045237 553 ---SALHPCSCTPDTL-----GRLPNVQTLKIYGDLSSYQSGLS-KSL-------------------------RELLKLE 598 (758)
Q Consensus 553 ---~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~l~-~~l-------------------------~~~~~L~ 598 (758)
++...+ ..|..+ +.+++|+.++++++. . .+| ..+ ..+++|+
T Consensus 253 ~l~~n~l~~-~~p~~~~~~~~~~l~~L~~l~l~~n~--~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~ 327 (520)
T 2z7x_B 253 SISNVKLQG-QLDFRDFDYSGTSLKALSIHQVVSDV--F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327 (520)
T ss_dssp EEEEEEEES-CCCCCCCCCCSCCCCEEEEEEEEECC--C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred EeecccccC-ccccchhhcccccCceeEeccccccc--e--ecchhhhhcccccCceeEEEcCCCccccccchhhCCccc
Confidence 222222 344444 445555555555442 1 122 111 4567788
Q ss_pred eEEeeecCCCcccccc---cC-CcCCCCCCccEEEEeeccCCC--CCcccccCCCCCceEEEeccccCCceeEEeCCCCC
Q 045237 599 SLKLVNKSKGWQLSQM---IL-SEYQFPPSLTQLSLSNTELKE--DPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGF 672 (758)
Q Consensus 599 ~L~L~~~~~~~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 672 (758)
.|++++ +.+ +| ++..+ ++|+.|++++|.+.+ ..|..++.+++|++|++++|.+.+..+... +..+
T Consensus 328 ~L~Ls~-------n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~~l 398 (520)
T 2z7x_B 328 HLDFSN-------NLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CSWT 398 (520)
T ss_dssp EEECCS-------SCCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-CCCC
T ss_pred EEEeEC-------CccChhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-hccC
Confidence 888877 444 56 88888 999999999999875 455678999999999999999887555433 5678
Q ss_pred ccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 673 PKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 673 ~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
++|+.|++++|......|..+. ++|+.|++++|. +..+|..+..+++|++|++++|.
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc
Confidence 9999999999974445544332 799999999997 66899988899999999999996
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.2e-24 Score=249.12 Aligned_cols=321 Identities=19% Similarity=0.162 Sum_probs=199.3
Q ss_pred CCCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCC-CccccCccc
Q 045237 402 ELRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQF-PSGIENLFL 478 (758)
Q Consensus 402 ~~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~ 478 (758)
.+..++++.+..+.........+. ++|++|.+.++... ...+..|.++++|++|++++|.++.+ |..|+++++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc----ccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 456677887774444443443444 77888888877664 34456677888888888888887755 677888888
Q ss_pred ccEEeccCCCCcccC-ccccCCCCCcEEEccCCcCc--ccchhhcccccCcEEEcCCC--CCC-CCCCCc----------
Q 045237 479 LRCLKLDVPSLKSLP-SSLCNLLNLQTLDMPSSYID--HTPEDIWNMHKLMHLNFGCI--TLP-APPENY---------- 542 (758)
Q Consensus 479 Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~--~~~-~~~~~~---------- 542 (758)
|++|++++|.++.+| ..++++++|++|++++|.+. .+|..++++++|++|+++++ ..+ |..++.
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 888888888877665 56778888888888888776 36777888888888877651 011 111111
Q ss_pred --------------------------------------------------------------------------------
Q 045237 543 -------------------------------------------------------------------------------- 542 (758)
Q Consensus 543 -------------------------------------------------------------------------------- 542 (758)
T Consensus 186 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred eeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence
Q ss_pred ----------------------------------------cccCcccccccccCCCCCCccccCCCCCCCeEEEEec---
Q 045237 543 ----------------------------------------CSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGD--- 579 (758)
Q Consensus 543 ----------------------------------------l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~--- 579 (758)
+++|+.|++.+|.. . .+| .+ .+++|+.|++++|
T Consensus 266 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~-~lp-~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-K-QFP-TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp EEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-S-SCC-CC-CCSSCCEEEEESCSSC
T ss_pred eeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-c-ccc-cC-CCCccceeeccCCcCc
Confidence 11222222222222 1 112 11 2333333333333
Q ss_pred -------------------CchhhhhHHHHhhccCCCceEEeeecCC-----Cc-c---c-------ccc---cC--CcC
Q 045237 580 -------------------LSSYQSGLSKSLRELLKLESLKLVNKSK-----GW-Q---L-------SQM---IL--SEY 619 (758)
Q Consensus 580 -------------------~~~~~~~l~~~l~~~~~L~~L~L~~~~~-----~~-~---~-------~~l---lp--~~~ 619 (758)
.-......+..+..+++|+.|+++++.- .+ . + +.+ .| .+.
T Consensus 342 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp EECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred cchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 1000111245556666666666665320 00 0 0 111 22 445
Q ss_pred CCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECccccccc
Q 045237 620 QFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKL 699 (758)
Q Consensus 620 ~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L 699 (758)
.+ ++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..++.. +..+++|+.|++++|......|..++.+++|
T Consensus 422 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 422 SL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cc-ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-hccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 55 777777777777766667777778888888888777766433333 6778888888888886333334567788888
Q ss_pred ceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 700 ESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 700 ~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
++|++++|......|..+.++++|+.|++++|.
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 999998887666567788888889999988886
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=5.4e-24 Score=227.93 Aligned_cols=297 Identities=17% Similarity=0.192 Sum_probs=213.6
Q ss_pred CCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCccccc
Q 045237 403 LRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLR 480 (758)
Q Consensus 403 ~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr 480 (758)
...++++.+. +........ +. +++++|.+.++.... .. . +..+++|++|++++|.++.+| .+..+++|+
T Consensus 43 l~~L~~L~l~-~~~i~~~~~-~~~~~~L~~L~l~~n~i~~----~~-~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 43 LESITKLVVA-GEKVASIQG-IEYLTNLEYLNLNGNQITD----IS-P-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp HTTCSEEECC-SSCCCCCTT-GGGCTTCCEEECCSSCCCC----CG-G-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred cccccEEEEe-CCccccchh-hhhcCCccEEEccCCcccc----ch-h-hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence 4567788877 333322332 33 788888888876653 22 2 788888888888888888775 488888888
Q ss_pred EEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCC-CCCCCCCccccCcccccccccCCCC
Q 045237 481 CLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCIT-LPAPPENYCSSLKNLIFISALHPCS 559 (758)
Q Consensus 481 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~ 559 (758)
+|++++|.++.+|. +.++++|++|++++|.....+..+..+++|++|+++++. .....+..+++|+.|++.++....
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 191 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED- 191 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC-
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc-
Confidence 88888888888776 888888888888888433334448888888888887621 111226778888888887776533
Q ss_pred CCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cCCcCCCCCCccEEEEeeccCCC
Q 045237 560 CTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--ILSEYQFPPSLTQLSLSNTELKE 637 (758)
Q Consensus 560 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp~~~~l~~~L~~L~L~~~~l~~ 637 (758)
.+ .+..+++|+.|+++++. ... .+. +..+++|+.|++++ +.+ +|.+..+ ++|+.|++++|.+..
T Consensus 192 -~~-~~~~l~~L~~L~l~~n~--l~~-~~~-~~~~~~L~~L~l~~-------n~l~~~~~~~~l-~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 192 -IS-PLASLTSLHYFTAYVNQ--ITD-ITP-VANMTRLNSLKIGN-------NKITDLSPLANL-SQLTWLEIGTNQISD 257 (347)
T ss_dssp -CG-GGGGCTTCCEEECCSSC--CCC-CGG-GGGCTTCCEEECCS-------SCCCCCGGGTTC-TTCCEEECCSSCCCC
T ss_pred -cc-cccCCCccceeecccCC--CCC-Cch-hhcCCcCCEEEccC-------CccCCCcchhcC-CCCCEEECCCCccCC
Confidence 22 27788888888888873 222 222 67788888888888 444 3345666 889999999888754
Q ss_pred CCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhh
Q 045237 638 DPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEEL 717 (758)
Q Consensus 638 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l 717 (758)
.+.+..+++|++|++++|.+.+.. .+..+++|+.|++++|......+..++.+++|+.|++++|+ +..+++ +
T Consensus 258 --~~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~ 329 (347)
T 4fmz_A 258 --INAVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-L 329 (347)
T ss_dssp --CGGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-G
T ss_pred --ChhHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-h
Confidence 256788889999999888776641 15678889999999887444555567788899999999988 455554 7
Q ss_pred cCCCCCcEEEEecCc
Q 045237 718 WRIESFRKLELHWPQ 732 (758)
Q Consensus 718 ~~l~sL~~L~l~~c~ 732 (758)
..+++|++|++++|+
T Consensus 330 ~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 330 ASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEESSSCC-
T ss_pred hhhhccceeehhhhc
Confidence 788899999998887
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=7.2e-24 Score=226.97 Aligned_cols=275 Identities=19% Similarity=0.232 Sum_probs=230.1
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTL 505 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 505 (758)
+++++|.+.++..... ..+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+.++++|++|
T Consensus 44 ~~L~~L~l~~~~i~~~------~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp TTCSEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred ccccEEEEeCCccccc------hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 7899999998877532 237889999999999999998887 999999999999999999886 69999999999
Q ss_pred EccCCcCcccchhhcccccCcEEEcCCC--CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchh
Q 045237 506 DMPSSYIDHTPEDIWNMHKLMHLNFGCI--TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSY 583 (758)
Q Consensus 506 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 583 (758)
++++|.+..+|. +..+++|++|+++++ ...+..+..+++|+.|++.++.... . ..++.+++|+.|++++|.
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~--~-~~~~~l~~L~~L~l~~n~--- 188 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD--V-TPIANLTDLYSLSLNYNQ--- 188 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECTTSC---
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC--c-hhhccCCCCCEEEccCCc---
Confidence 999999999887 899999999999873 2334458889999999988887644 2 238899999999999983
Q ss_pred hhhHHHHhhccCCCceEEeeecCCCcccccc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCC
Q 045237 584 QSGLSKSLRELLKLESLKLVNKSKGWQLSQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSG 661 (758)
Q Consensus 584 ~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 661 (758)
...++. +..+++|+.|++++ +.+ ++.+..+ ++|+.|++++|.+.... + +..+++|++|++++|.+.+
T Consensus 189 l~~~~~-~~~l~~L~~L~l~~-------n~l~~~~~~~~~-~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 189 IEDISP-LASLTSLHYFTAYV-------NQITDITPVANM-TRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCS-------SCCCCCGGGGGC-TTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC
T ss_pred cccccc-ccCCCccceeeccc-------CCCCCCchhhcC-CcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCC
Confidence 233333 78899999999998 444 2245666 99999999999986543 3 8999999999999998876
Q ss_pred ceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 662 RKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 662 ~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
. . .+..+++|+.|++++|. +..++ .+..+++|+.|++++|+.....|..+..+++|++|++++|+
T Consensus 258 ~--~--~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 258 I--N--AVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp C--G--GGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred C--h--hHhcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 4 1 26789999999999985 66664 57889999999999998666677789999999999999997
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3e-24 Score=246.96 Aligned_cols=282 Identities=18% Similarity=0.205 Sum_probs=199.3
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccCcc-ccCCCCCc
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLPSS-LCNLLNLQ 503 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~ 503 (758)
.+++.|.+.++... .+++.+|..+++|++|+|++|.++.+| ..++.+++|++|+|++|.++.+|.. ++++++|+
T Consensus 51 ~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 66777777766654 455667777888888888888877554 4777888888888888887766544 57788888
Q ss_pred EEEccCCcCcccchh-hcccccCcEEEcCCC--CC-CCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEec
Q 045237 504 TLDMPSSYIDHTPED-IWNMHKLMHLNFGCI--TL-PAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGD 579 (758)
Q Consensus 504 ~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~--~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 579 (758)
+|+|++|.+..+|.. +.++++|++|+++++ .. .|..++.+++|+.|++.++.... . .++.+++|+.|+++++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C---CGGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c---ChhhhhhhhhhhcccC
Confidence 888888887777766 477888888887762 22 33357777888888877765533 1 2344556666666555
Q ss_pred Cch----------------hhhhHHHHhhccCCCceEEeeecCCCcccccc--cCCcCCCCCCccEEEEeeccCCCCCcc
Q 045237 580 LSS----------------YQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--ILSEYQFPPSLTQLSLSNTELKEDPMP 641 (758)
Q Consensus 580 ~~~----------------~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~ 641 (758)
.-. ....++.. ..++|+.|++++ +.+ .+++..+ ++|+.|+|++|.+.+..|.
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~-------n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQH-------NNLTDTAWLLNY-PGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCS-------SCCCCCGGGGGC-TTCSEEECCSSCCCEEESG
T ss_pred ccccccCCchhheeeccCCcccccccc--cCCCCCEEECCC-------CCCCCChhhccC-CCCCEEECCCCccCCCCHH
Confidence 200 11111111 113555666655 333 2367777 8999999999998877788
Q ss_pred cccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcCCC
Q 045237 642 TLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIE 721 (758)
Q Consensus 642 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 721 (758)
.++.+++|+.|+|++|.+.+. +.. ...+++|+.|+|++|. +..+|..++.+++|+.|++++|+ +..+| +..++
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l--~~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~ 345 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVAL--NLY-GQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHH 345 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEE--ECS-SSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTC
T ss_pred HhcCccCCCEEECCCCCCCCC--Ccc-cccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcC--hhhcC
Confidence 889999999999998887662 222 4668999999999986 66888788889999999999988 45555 67789
Q ss_pred CCcEEEEecCc
Q 045237 722 SFRKLELHWPQ 732 (758)
Q Consensus 722 sL~~L~l~~c~ 732 (758)
+|+.|++++||
T Consensus 346 ~L~~L~l~~N~ 356 (597)
T 3oja_B 346 TLKNLTLSHND 356 (597)
T ss_dssp CCSEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 99999999987
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=3.3e-24 Score=245.10 Aligned_cols=305 Identities=17% Similarity=0.181 Sum_probs=222.7
Q ss_pred CCCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccc
Q 045237 402 ELRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLL 479 (758)
Q Consensus 402 ~~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L 479 (758)
.+..+++|.+..+.........+. ++|++|.+.++... ...+..|.++++|++|++++|.++.+|.. .+++|
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC----cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 346789999996655554545566 89999999998875 45567899999999999999999999987 89999
Q ss_pred cEEeccCCCCcccC--ccccCCCCCcEEEccCCcCcccchhhcccccC--cEEEcCCCCC-----CCCCCCc--------
Q 045237 480 RCLKLDVPSLKSLP--SSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKL--MHLNFGCITL-----PAPPENY-------- 542 (758)
Q Consensus 480 r~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~~~-----~~~~~~~-------- 542 (758)
++|++++|.++.+| ..++++++|++|++++|.+.. ..+..+++| ++|+++++.. .|..+..
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 99999999999754 789999999999999998765 235555555 7777654211 1222211
Q ss_pred ------------------cc-------------------------------------------------------cCccc
Q 045237 543 ------------------CS-------------------------------------------------------SLKNL 549 (758)
Q Consensus 543 ------------------l~-------------------------------------------------------~L~~L 549 (758)
++ +|++|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 11 34444
Q ss_pred ccccccCCCCCCcccc-----------------------------------------------------CCCCCCCeEEE
Q 045237 550 IFISALHPCSCTPDTL-----------------------------------------------------GRLPNVQTLKI 576 (758)
Q Consensus 550 ~l~~~~~~~~~~~~~l-----------------------------------------------------~~l~~L~~L~l 576 (758)
++.++...+ .+|..+ +.+++|+.|++
T Consensus 282 ~l~~n~l~~-~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 360 (562)
T 3a79_B 282 NIYNLTITE-RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEEECS-CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEeccEeec-cccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEEC
Confidence 444333222 233322 45666677777
Q ss_pred EecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc-----cC-CcCCCCCCccEEEEeeccCCCCCcc-cccCCCCC
Q 045237 577 YGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM-----IL-SEYQFPPSLTQLSLSNTELKEDPMP-TLEKLPHL 649 (758)
Q Consensus 577 ~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l-----lp-~~~~l~~~L~~L~L~~~~l~~~~~~-~l~~l~~L 649 (758)
++| ...+..|..+..+++|+.|++++ +.+ +| .+..+ ++|+.|++++|.+.+.+|. .+..+++|
T Consensus 361 ~~n--~l~~~~~~~~~~l~~L~~L~L~~-------N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 361 TQN--VFTDSVFQGCSTLKRLQTLILQR-------NGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CSS--CCCTTTTTTCCSCSSCCEEECCS-------SCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCC--ccccchhhhhcccCCCCEEECCC-------CCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChhhhcCcccC
Confidence 766 34444566667777777777776 333 34 56677 8888888888887763443 57778888
Q ss_pred ceEEEeccccCCceeEEeCCCCC-ccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchh-hcCCCCCcEEE
Q 045237 650 LVLKLKQNSYSGRKLACVGSGGF-PKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEE-LWRIESFRKLE 727 (758)
Q Consensus 650 ~~L~L~~n~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~sL~~L~ 727 (758)
+.|++++|.+.+..+ ..+ ++|+.|++++|. ++.+|..+..+++|+.|++++|. +..+|.. +..+++|+.|+
T Consensus 431 ~~L~l~~n~l~~~~~-----~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 431 LVLNLSSNMLTGSVF-----RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CEEECCSSCCCGGGG-----SSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEE
T ss_pred CEEECCCCCCCcchh-----hhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEE
Confidence 888888888776543 234 699999999984 78899888899999999999998 6688887 88999999999
Q ss_pred EecCc
Q 045237 728 LHWPQ 732 (758)
Q Consensus 728 l~~c~ 732 (758)
+++||
T Consensus 504 l~~N~ 508 (562)
T 3a79_B 504 LHDNP 508 (562)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 99976
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.5e-23 Score=233.94 Aligned_cols=301 Identities=19% Similarity=0.184 Sum_probs=190.7
Q ss_pred CceeEEEeeCCCCccccccccc-cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEE
Q 045237 404 RTIKRFAVPKNLTKFVSLEHID-TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCL 482 (758)
Q Consensus 404 ~~~r~Ls~~~~~~~~~~~~~~~-~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L 482 (758)
..++.+.+. +......+.... ++|+.|.+.++.... .. . +.++++|++|++++|.+..++. ++++++|++|
T Consensus 46 ~~l~~L~l~-~~~i~~l~~~~~l~~L~~L~Ls~n~l~~----~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQAD-RLGIKSIDGVEYLNNLTQINFSNNQLTD----IT-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCCC----CG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecC-CCCCccCcchhhhcCCCEEECCCCccCC----ch-h-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 456777776 333222332222 788888888877653 22 2 7888889999999888887776 8888899999
Q ss_pred eccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCc
Q 045237 483 KLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTP 562 (758)
Q Consensus 483 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 562 (758)
++++|.++.+|. +.++++|++|++++|.+..+|. +..+++|++|++++.......+..+++|+.|++.++.... .
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~ 192 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD---I 192 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC---C
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC---C
Confidence 998888888875 8888899999998888877764 7777777777765422222336666777777766655422 2
Q ss_pred cccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC-Ccc-------c-------ccc--cCCcCCCCCCc
Q 045237 563 DTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK-GWQ-------L-------SQM--ILSEYQFPPSL 625 (758)
Q Consensus 563 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~-~~~-------~-------~~l--lp~~~~l~~~L 625 (758)
..+..+++|+.|++++|. ..+..+ +..+++|+.|+++++.- .+. + +.+ ++.+..+ ++|
T Consensus 193 ~~l~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l-~~L 267 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQ--ISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL-TKL 267 (466)
T ss_dssp GGGGGCTTCSEEECCSSC--CCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTC-TTC
T ss_pred hhhccCCCCCEEEecCCc--cccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcC-CCC
Confidence 345666666666666662 222212 44555566666655210 000 0 222 1224444 666
Q ss_pred cEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEe
Q 045237 626 TQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIIN 705 (758)
Q Consensus 626 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~ 705 (758)
+.|++++|.+.+.. + +..+++|+.|++++|.+.+..+ +..+++|+.|++++|. +..++. +..+++|+.|++.
T Consensus 268 ~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 268 TELKLGANQISNIS-P-LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFY 339 (466)
T ss_dssp SEEECCSSCCCCCG-G-GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECC
T ss_pred CEEECCCCccCccc-c-ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECC
Confidence 66666666654322 2 6666777777777666655332 3466777777777775 444432 5677788888888
Q ss_pred ccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 706 PCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 706 ~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
+|+ +..++ .+.++++|+.|++++|+
T Consensus 340 ~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 340 NNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 775 44453 57778888888888776
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=9.3e-24 Score=223.78 Aligned_cols=230 Identities=23% Similarity=0.256 Sum_probs=186.5
Q ss_pred cCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcC
Q 045237 452 KFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFG 531 (758)
Q Consensus 452 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 531 (758)
..+.++.|+|+++.++.+|..++++++|++|+|++|.++.+|..++++++|++|+|++|.+..+|..+.++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC---CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCC
Q 045237 532 CI---TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKG 608 (758)
Q Consensus 532 ~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 608 (758)
++ ..+|..++. . ..+..++.+++|+.|++++|. ...+|.
T Consensus 159 ~n~~~~~~p~~~~~------~----------~~~~~~~~l~~L~~L~L~~n~---l~~lp~------------------- 200 (328)
T 4fcg_A 159 ACPELTELPEPLAS------T----------DASGEHQGLVNLQSLRLEWTG---IRSLPA------------------- 200 (328)
T ss_dssp EETTCCCCCSCSEE------E----------C-CCCEEESTTCCEEEEEEEC---CCCCCG-------------------
T ss_pred CCCCccccChhHhh------c----------cchhhhccCCCCCEEECcCCC---cCcchH-------------------
Confidence 52 122222211 0 122234456667777776661 112222
Q ss_pred cccccccCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCc
Q 045237 609 WQLSQMILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEE 688 (758)
Q Consensus 609 ~~~~~llp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 688 (758)
++..+ ++|+.|++++|.+. .+|+.++.+++|++|++++|.+.+..+.. +..+++|+.|+|++|..+..
T Consensus 201 --------~l~~l-~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 201 --------SIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp --------GGGGC-TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCB
T ss_pred --------hhcCC-CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhh
Confidence 45555 78888888888876 46667889999999999998888877654 67899999999999998889
Q ss_pred eEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecC
Q 045237 689 WTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWP 731 (758)
Q Consensus 689 l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c 731 (758)
+|..++.+++|+.|+|++|+.++.+|..+.++++|+.+.+...
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9988999999999999999999999999999999999988754
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=240.56 Aligned_cols=112 Identities=21% Similarity=0.172 Sum_probs=90.4
Q ss_pred CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCC-ceeEEeCCCCCccccEEeeccCCCcCce-EECcc
Q 045237 617 SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSG-RKLACVGSGGFPKLKILHLKSMFWLEEW-TMGAR 694 (758)
Q Consensus 617 ~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~ 694 (758)
.+..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+.+ ..+.. +..+++|+.|++++|. +..+ |..+.
T Consensus 416 ~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~ 491 (570)
T 2z63_A 416 VFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQ-LEQLSPTAFN 491 (570)
T ss_dssp TTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC--CTTCTTCCEEECTTSC-CCEECTTTTT
T ss_pred hhhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh--hhcccCCCEEECCCCc-cccCChhhhh
Confidence 45566 888999998888877778888889999999999888763 33322 6789999999999987 5555 66788
Q ss_pred cccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 695 AMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 695 ~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.+++|+.|++++|......|..+.++++|+.|++++||
T Consensus 492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 99999999999997544445568899999999999865
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.9e-24 Score=247.08 Aligned_cols=289 Identities=17% Similarity=0.127 Sum_probs=222.4
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCccc-CccccCCCCCcE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSL-PSSLCNLLNLQT 504 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~ 504 (758)
..++.|.+.++... ...+..|..+++|+.|++++|.++.+|..++.+++|++|++++|.++.+ |..+.++++|++
T Consensus 254 ~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 254 MSVESINLQKHYFF----NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp SEEEEEECTTCCCS----SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred CceeEEEeecCccC----ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 36778888777665 4455668888889999999988888888888888999999998888865 557888889999
Q ss_pred EEccCCcCc-ccchh-hcccccCcEEEcCCCC--CC---CCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEE
Q 045237 505 LDMPSSYID-HTPED-IWNMHKLMHLNFGCIT--LP---APPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIY 577 (758)
Q Consensus 505 L~L~~~~l~-~lp~~-i~~l~~L~~L~l~~~~--~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 577 (758)
|++++|.+. .+|.. +.++++|++|+++++. .. +..++.+++|++|++.++.... ..+..++.+++|+.|+++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE-ECTTTTTTCTTCSEEECT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc-CCHHHhcCCccCCeEECC
Confidence 999888654 56554 7888889999887631 11 5567888888888888776544 556778888889999888
Q ss_pred ecCchhhhhHH-HHhhccCCCceEEeeecCCCcccccc---cC-CcCCCCCCccEEEEeeccCCCC---CcccccCCCCC
Q 045237 578 GDLSSYQSGLS-KSLRELLKLESLKLVNKSKGWQLSQM---IL-SEYQFPPSLTQLSLSNTELKED---PMPTLEKLPHL 649 (758)
Q Consensus 578 ~~~~~~~~~l~-~~l~~~~~L~~L~L~~~~~~~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~~---~~~~l~~l~~L 649 (758)
+|. .....+ ..+..+++|+.|++++ +.+ .| .+..+ ++|+.|++++|.+.+. .+..+..+++|
T Consensus 409 ~n~--l~~~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 409 FTR--LKVKDAQSPFQNLHLLKVLNLSH-------SLLDISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp TCC--EECCTTCCTTTTCTTCCEEECTT-------CCCBTTCTTTTTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CCc--CCCcccchhhhCcccCCEEECCC-------CccCCcCHHHHhCC-CCCCEEECCCCCCCccccccchhhccCCCc
Confidence 873 333333 3477788899999887 444 45 67777 8999999999987652 23567888999
Q ss_pred ceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEe
Q 045237 650 LVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELH 729 (758)
Q Consensus 650 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~ 729 (758)
++|++++|.+.+..+.. +..+++|+.|+|++|......|..+..+++| .|++++|......|..+..+++|+.|+++
T Consensus 479 ~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHA--FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp CEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred cEEECCCCccCccChhh--hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 99999988876544332 6778999999999987545556678888899 99999998666666678889999999999
Q ss_pred cCc
Q 045237 730 WPQ 732 (758)
Q Consensus 730 ~c~ 732 (758)
+||
T Consensus 556 ~N~ 558 (606)
T 3t6q_A 556 QNP 558 (606)
T ss_dssp TCC
T ss_pred CCC
Confidence 876
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.7e-23 Score=241.64 Aligned_cols=265 Identities=19% Similarity=0.164 Sum_probs=223.6
Q ss_pred eeEEEEcCCCCCCCCCc-cccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCccc-chhhcccccCcEEEcCC
Q 045237 455 LLRVLNMGSLVLDQFPS-GIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHT-PEDIWNMHKLMHLNFGC 532 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~ 532 (758)
.|+.|++++|.+..+|. .++.+++|++|++++|.++.+|..+.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 78999999999887764 48999999999999999999999999999999999999998887 56799999999999987
Q ss_pred CC---CCCC-CCCccccCcccccccccCCCCCC--ccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecC
Q 045237 533 IT---LPAP-PENYCSSLKNLIFISALHPCSCT--PDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKS 606 (758)
Q Consensus 533 ~~---~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 606 (758)
+. .+|. .++.+++|++|++.++.... .. +..++.+++|+.|++++| ......+..+..+++|+.|++++
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-- 409 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYN--EPLSLKTEAFKECPQLELLDLAF-- 409 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCE-EEESTTTTTTCTTCCEEECCSC--SCEEECTTTTTTCTTCSEEECTT--
T ss_pred CCcccccchhhhhccCcCCEEECCCCcccc-ccCcchhcccCCCCCEEECCCC--cCCcCCHHHhcCCccCCeEECCC--
Confidence 42 3344 48889999999988877644 22 667899999999999998 45555677888999999999998
Q ss_pred CCcccccc---cC--CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEE-eCCCCCccccEEee
Q 045237 607 KGWQLSQM---IL--SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLAC-VGSGGFPKLKILHL 680 (758)
Q Consensus 607 ~~~~~~~l---lp--~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~~~L~~L~L 680 (758)
+.+ .| .+..+ ++|+.|++++|.+....+..++.+++|++|++++|.+.+..+.. ..+..+++|+.|++
T Consensus 410 -----n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 410 -----TRLKVKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp -----CCEECCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred -----CcCCCcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 444 33 47788 99999999999998888889999999999999999887643321 12567899999999
Q ss_pred ccCCCcCce-EECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 681 KSMFWLEEW-TMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 681 ~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
++|. +..+ |..++.+++|+.|++++|......|..+.++++| .|++++|.
T Consensus 484 s~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 484 SFCD-LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCc-cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 9996 5554 5678899999999999999777778899999999 99999885
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=5.4e-24 Score=245.89 Aligned_cols=186 Identities=14% Similarity=0.086 Sum_probs=129.2
Q ss_pred CCccccCcccccccccCCCC-CCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC----C---c-c
Q 045237 540 ENYCSSLKNLIFISALHPCS-CTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK----G---W-Q 610 (758)
Q Consensus 540 ~~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~----~---~-~ 610 (758)
++.+++|+.|++.++..... ..+..+..+++|+.|++++|. ...+|..+..+++|+.|+++++.- . + .
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~---l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG---AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS---EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc---cccchhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 34455555555554433220 024455566666666666652 222334444455555555544210 0 0 0
Q ss_pred c----------ccc---cC-CcCCCCCCccEEEEeeccCCCC-CcccccCCCCCceEEEeccccCCceeEEeCCCCCccc
Q 045237 611 L----------SQM---IL-SEYQFPPSLTQLSLSNTELKED-PMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKL 675 (758)
Q Consensus 611 ~----------~~l---lp-~~~~l~~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L 675 (758)
+ +.+ .| .+..+ ++|+.|++++|.+.+. +|..++.+++|+.|++++|.+.+..+.. +..+++|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L 499 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV--FDTLHRL 499 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTC
T ss_pred cccCCEEECcCCCCCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh--hcccccC
Confidence 0 333 56 78888 9999999999998763 6778999999999999999887644433 6789999
Q ss_pred cEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcCCC-CCcEEEEecCc
Q 045237 676 KILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIE-SFRKLELHWPQ 732 (758)
Q Consensus 676 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-sL~~L~l~~c~ 732 (758)
+.|++++|......|..++.+++|+.|++++|. +..+|..+..++ +|+.|++++||
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 999999997444447788999999999999998 678998898887 69999999977
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=8e-23 Score=244.54 Aligned_cols=312 Identities=18% Similarity=0.173 Sum_probs=218.0
Q ss_pred CCCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCC-CccccCccc
Q 045237 402 ELRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQF-PSGIENLFL 478 (758)
Q Consensus 402 ~~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~ 478 (758)
.+..+++|.+..+......+..+. ++|+.|.+.++.... .+.+..|.++++|++|+|++|.+..+ |..++++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~---~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL---TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC---EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc---ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 567889999986655554555555 899999998874432 44467889999999999999998855 888999999
Q ss_pred ccEEeccCCCCcc-cCcc--ccCCCCCcEEEccCCcCccc--chhhcccccCcEEEcCCCC---CCCCCCCcc--ccCcc
Q 045237 479 LRCLKLDVPSLKS-LPSS--LCNLLNLQTLDMPSSYIDHT--PEDIWNMHKLMHLNFGCIT---LPAPPENYC--SSLKN 548 (758)
Q Consensus 479 Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~l~~~~---~~~~~~~~l--~~L~~ 548 (758)
|++|+|++|.++. +|.. ++++++|++|+|++|.+..+ +..++++++|++|+++++. ..+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 9999999999884 5655 88999999999999988776 3568999999999988732 233445555 77888
Q ss_pred cccccccCCCCCCccccCCCCC------CCeEEEEecCchhhhhHHHHhh------------------------------
Q 045237 549 LIFISALHPCSCTPDTLGRLPN------VQTLKIYGDLSSYQSGLSKSLR------------------------------ 592 (758)
Q Consensus 549 L~l~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~l~~~l~------------------------------ 592 (758)
|++..+.... ..+..++.+++ |+.|++++|. .....+..+.
T Consensus 179 L~L~~n~l~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 179 FSLAANSLYS-RVSVDWGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp CEECCSBSCC-CCCCCCCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred EECCCCcccc-ccccchhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 8877776655 55555555554 8888888772 2222221111
Q ss_pred ------c--cCCCceEEeeecCCCcccccccC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCce
Q 045237 593 ------E--LLKLESLKLVNKSKGWQLSQMIL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRK 663 (758)
Q Consensus 593 ------~--~~~L~~L~L~~~~~~~~~~~llp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 663 (758)
. .++|+.|+++++. +..+.| .+..+ ++|+.|+|++|.+.+..+..+..+++|++|+|++|.+.+..
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~----l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGF----VFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCC----CCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ChhhhhccccCCccEEECCCCc----ccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 1 1456666666521 011244 56666 88888888888877666777788888888888877776544
Q ss_pred eEEeCCCCCccccEEeeccCCCcCceEE-CcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 664 LACVGSGGFPKLKILHLKSMFWLEEWTM-GARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 664 ~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
+.. +..+++|+.|++++|. +..++. .+..+++|+.|++++|. +..++. +++|+.|++++|+
T Consensus 331 ~~~--~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 331 SSN--FYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp SCS--CSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEESCC
T ss_pred HHH--hcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC-CCcccC----CCCcchhccCCCC
Confidence 333 5677888888888774 555543 46677888888888776 444433 5666677666654
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=227.87 Aligned_cols=265 Identities=17% Similarity=0.131 Sum_probs=223.4
Q ss_pred CeeEEEEcCCCCCCCC-CccccCcccccEEeccCCCCccc-CccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEc
Q 045237 454 KLLRVLNMGSLVLDQF-PSGIENLFLLRCLKLDVPSLKSL-PSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNF 530 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 530 (758)
+.|++|+|++|.++.+ |..+.++++|++|+|++|.++.+ |..+.++++|++|+|++|.+..+|.. +.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5789999999999966 57899999999999999999966 77899999999999999999999875 789999999999
Q ss_pred CCC---CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC
Q 045237 531 GCI---TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK 607 (758)
Q Consensus 531 ~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 607 (758)
+++ ...+..+..+++|+.|++.++.... ..+..+..+++|+.|++++| ......+..+..+++|+.|++++
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~--- 185 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKC--NLTSIPTEALSHLHGLIVLRLRH--- 185 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESC--CCSSCCHHHHTTCTTCCEEEEES---
T ss_pred CCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCC--cCcccChhHhcccCCCcEEeCCC---
Confidence 873 2345678899999999998877655 55678899999999999998 34444456788999999999998
Q ss_pred Ccccccc---cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccC
Q 045237 608 GWQLSQM---IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSM 683 (758)
Q Consensus 608 ~~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~ 683 (758)
+.+ .+ .+..+ ++|+.|++++|...+..++......+|+.|++++|.+....... +..+++|+.|+|++|
T Consensus 186 ----n~i~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 186 ----LNINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--VRHLVYLRFLNLSYN 258 (477)
T ss_dssp ----CCCCEECTTCSCSC-TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH--HTTCTTCCEEECCSS
T ss_pred ----CcCcEeChhhcccC-cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH--hcCccccCeeECCCC
Confidence 444 34 67778 99999999999887777777777789999999999887533222 578999999999998
Q ss_pred CCcCceEE-CcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 684 FWLEEWTM-GARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 684 ~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
. +..++. .+..+++|+.|++.+|......|..+..+++|+.|++++|.
T Consensus 259 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 259 P-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp C-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred c-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 7 666653 57889999999999998666667889999999999999985
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.5e-22 Score=225.66 Aligned_cols=295 Identities=20% Similarity=0.189 Sum_probs=215.3
Q ss_pred CCCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccc
Q 045237 402 ELRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLL 479 (758)
Q Consensus 402 ~~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L 479 (758)
....+++|.+..+.... ... +. ++|+.|.+.++.... .. . +.++++|++|++++|.++.+|. ++++++|
T Consensus 66 ~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~----~~-~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIAD----IT-P-LANLTNLTGLTLFNNQITDIDP-LKNLTNL 136 (466)
T ss_dssp GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC----CG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred hhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCcccc----Ch-h-hcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence 45677888887443333 333 44 888888888877653 22 2 7888888999998888887765 7888888
Q ss_pred cEEeccCCCCcccCc--------------------cccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCC--CCC
Q 045237 480 RCLKLDVPSLKSLPS--------------------SLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCIT--LPA 537 (758)
Q Consensus 480 r~L~L~~~~i~~lp~--------------------~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~--~~~ 537 (758)
++|++++|.+..+|. .+.++++|++|++++|.+..++. +.++++|++|+++++. ..+
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCG
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccc
Confidence 888888887766542 24566677777777777666643 6677777777776521 121
Q ss_pred CCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--c
Q 045237 538 PPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--I 615 (758)
Q Consensus 538 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--l 615 (758)
.++.+++|+.|++.++.... ...+..+++|+.|++++|. ..+ ++. +..+++|+.|++++ +.+ +
T Consensus 216 -~~~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l~~n~--l~~-~~~-~~~l~~L~~L~l~~-------n~l~~~ 280 (466)
T 1o6v_A 216 -PLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQ--ISN-LAP-LSGLTKLTELKLGA-------NQISNI 280 (466)
T ss_dssp -GGGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSC--CCC-CGG-GTTCTTCSEEECCS-------SCCCCC
T ss_pred -cccccCCCCEEECCCCCccc---chhhhcCCCCCEEECCCCc--ccc-chh-hhcCCCCCEEECCC-------CccCcc
Confidence 25667777777777665433 2456777888888888773 222 222 67778888888887 444 3
Q ss_pred CCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECccc
Q 045237 616 LSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARA 695 (758)
Q Consensus 616 p~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 695 (758)
|.+..+ ++|+.|++++|.+.+.. .++.+++|+.|++++|.+.+..+ ...+++|+.|++++|. +..++ .+..
T Consensus 281 ~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~-~l~~ 351 (466)
T 1o6v_A 281 SPLAGL-TALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFYNNK-VSDVS-SLAN 351 (466)
T ss_dssp GGGTTC-TTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG----GGGCTTCCEEECCSSC-CCCCG-GGTT
T ss_pred ccccCC-CccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCchh----hccCccCCEeECCCCc-cCCch-hhcc
Confidence 346677 99999999999986543 38899999999999999887654 4678999999999985 66664 6788
Q ss_pred ccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 696 MTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 696 l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
+++|+.|++++|+... +++ +..+++|+.|++++|+
T Consensus 352 l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 352 LTNINWLSAGHNQISD-LTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CTTCCEEECCSSCCCB-CGG-GTTCTTCCEEECCCEE
T ss_pred CCCCCEEeCCCCccCc-cch-hhcCCCCCEEeccCCc
Confidence 9999999999998544 444 8899999999999986
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=7.3e-23 Score=222.84 Aligned_cols=267 Identities=14% Similarity=0.134 Sum_probs=216.0
Q ss_pred cCCeeEEEEcCCCCCCCCCcc-ccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCcccch-hhcccccCcEE
Q 045237 452 KFKLLRVLNMGSLVLDQFPSG-IENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHL 528 (758)
Q Consensus 452 ~l~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L 528 (758)
.++++++|+++++.++.+|.. +..+++|++|++++|.++.+|. .+.++++|++|++++|.+..+|. .+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467899999999999999876 6889999999999999997765 78999999999999999988864 48999999999
Q ss_pred EcCC--CCCCCCC-CCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeec
Q 045237 529 NFGC--ITLPAPP-ENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNK 605 (758)
Q Consensus 529 ~l~~--~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 605 (758)
++++ ...+|.. ++.+++|++|++.++.... ..+..++.+++|+.|++++|. ... + .+..+++|+.|+++++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~--l~~-~--~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANVSYN 196 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSC--CSB-C--CGGGCTTCSEEECCSS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCc--CCc-c--ccccccccceeecccc
Confidence 9987 4456665 5889999999998887655 556678999999999999984 222 2 2456677777777763
Q ss_pred CC-C----ccc-------ccc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCC
Q 045237 606 SK-G----WQL-------SQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGG 671 (758)
Q Consensus 606 ~~-~----~~~-------~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 671 (758)
.- . ..+ +.+ +| ...+ ++|+.|++++|.+.+ ++.++.+++|++|++++|.+.+..+.. +..
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~-~~~~-~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~ 270 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVR-GPVN-VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP--FVK 270 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEE-CCCC-SSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG--GTT
T ss_pred cccccCCCCcceEEECCCCeeeecc-cccc-ccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhH--ccc
Confidence 21 0 000 111 22 1122 789999999999864 368899999999999999887654433 678
Q ss_pred CccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 672 FPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 672 ~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
+++|+.|++++|. ++.+|.....+++|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 271 l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 271 MQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred cccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 9999999999985 78888888899999999999997 67899889999999999999997
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.9e-22 Score=229.95 Aligned_cols=311 Identities=17% Similarity=0.129 Sum_probs=185.5
Q ss_pred CceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCcc-ccCccccc
Q 045237 404 RTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSG-IENLFLLR 480 (758)
Q Consensus 404 ~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr 480 (758)
..++++.+..+......+..+. ++|++|.+.++... ...+..|.++++|++|++++|.+..+|.. ++++++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 4566666664433333333344 66777777666554 33345566677777777777766655543 66677777
Q ss_pred EEeccCCCCcc--cCccccCCCCCcEEEccCCc-Ccccc-hhhcccccCcEEEcCCC---CCCCCCCCcc----------
Q 045237 481 CLKLDVPSLKS--LPSSLCNLLNLQTLDMPSSY-IDHTP-EDIWNMHKLMHLNFGCI---TLPAPPENYC---------- 543 (758)
Q Consensus 481 ~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~-l~~lp-~~i~~l~~L~~L~l~~~---~~~~~~~~~l---------- 543 (758)
+|++++|.++. .|..++++++|++|++++|. +..+| ..+.++++|++|+++++ ...|..++.+
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 77777776663 35566666677777776664 55554 34556666666655431 1122222222
Q ss_pred --------------ccCcccccccccCCCC--------------------------------------------------
Q 045237 544 --------------SSLKNLIFISALHPCS-------------------------------------------------- 559 (758)
Q Consensus 544 --------------~~L~~L~l~~~~~~~~-------------------------------------------------- 559 (758)
++|+.|++.++...+.
T Consensus 182 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp SBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred CcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 2222222222211100
Q ss_pred --------------------------------------------------------------CCcccc-CCCCCCCeEEE
Q 045237 560 --------------------------------------------------------------CTPDTL-GRLPNVQTLKI 576 (758)
Q Consensus 560 --------------------------------------------------------------~~~~~l-~~l~~L~~L~l 576 (758)
.+|..+ +.+++|+.|++
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEEC
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEc
Confidence 112222 24778888888
Q ss_pred EecCchhhhhHHH---HhhccCCCceEEeeecCCCcccccc--c---C-CcCCCCCCccEEEEeeccCCCCCcccccCCC
Q 045237 577 YGDLSSYQSGLSK---SLRELLKLESLKLVNKSKGWQLSQM--I---L-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLP 647 (758)
Q Consensus 577 ~~~~~~~~~~l~~---~l~~~~~L~~L~L~~~~~~~~~~~l--l---p-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~ 647 (758)
++| ...+..|. .+..+++|+.|++++ +.+ + + .+..+ ++|+.|++++|.+. .+|..+..++
T Consensus 342 s~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~-------N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 342 SEN--LMVEEYLKNSACKGAWPSLQTLVLSQ-------NHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp CSS--CCCHHHHHHHTCTTSSTTCCEEECTT-------SCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCC--ccccccccchhhhhccccCcEEEccC-------CcccccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccc
Confidence 887 34444443 366778888888887 333 1 1 24455 66666666666654 4555555666
Q ss_pred CCceEEEeccccCCce---e-------------EEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccccCC
Q 045237 648 HLLVLKLKQNSYSGRK---L-------------ACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLK 711 (758)
Q Consensus 648 ~L~~L~L~~n~~~~~~---~-------------~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 711 (758)
+|++|++++|.+.... + ... ...+++|+.|+|++|. ++.+|. ...+++|+.|++++|....
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N~-l~~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF-SLFLPRLQELYISRNK-LKTLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSSC-CSSCCC-GGGCTTCCEEECCSSCCCC
T ss_pred cccEEECCCCCcccccchhcCCceEEECCCCChhhh-cccCChhcEEECCCCc-cCcCCC-cccCccCCEEecCCCccCC
Confidence 6666666655543210 0 000 2368899999999985 778886 5679999999999998555
Q ss_pred CCchhhcCCCCCcEEEEecCc
Q 045237 712 KLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 712 ~lp~~l~~l~sL~~L~l~~c~ 732 (758)
..|..+..+++|+.|++++||
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSC
T ss_pred cCHHHHhcCcccCEEEecCCC
Confidence 555668999999999999887
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.6e-23 Score=233.02 Aligned_cols=300 Identities=14% Similarity=0.060 Sum_probs=229.4
Q ss_pred cccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCC-CC-CccccCcccccEEeccCCCCccc-CccccCCC
Q 045237 424 IDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLD-QF-PSGIENLFLLRCLKLDVPSLKSL-PSSLCNLL 500 (758)
Q Consensus 424 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~ 500 (758)
+.++++.|.+.++... ...+..|.++++|++|++++|.+. .+ |..++.+++|++|++++|.++.+ |..+++++
T Consensus 28 l~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 3378999999988775 445677899999999999999876 44 56789999999999999999865 77899999
Q ss_pred CCcEEEccCCcCcc-cchh--hcccccCcEEEcCCC--CCC-CCC-CCccccCcccccccccCCCCCCccccCCC--CCC
Q 045237 501 NLQTLDMPSSYIDH-TPED--IWNMHKLMHLNFGCI--TLP-APP-ENYCSSLKNLIFISALHPCSCTPDTLGRL--PNV 571 (758)
Q Consensus 501 ~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~--~~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L 571 (758)
+|++|++++|.+.. +|.. +.++++|++|+++++ ... |.. ++.+++|++|++.++.... ..+..+..+ .+|
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~L 182 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHF 182 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC-CCTTTSGGGTTCEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc-cChhhhhccccccc
Confidence 99999999998875 4544 889999999999873 233 333 7889999999988887655 556666655 678
Q ss_pred CeEEEEecCchhhh------hHHHHhhccCCCceEEeeecCCC-------------cccccc------------------
Q 045237 572 QTLKIYGDLSSYQS------GLSKSLRELLKLESLKLVNKSKG-------------WQLSQM------------------ 614 (758)
Q Consensus 572 ~~L~l~~~~~~~~~------~l~~~l~~~~~L~~L~L~~~~~~-------------~~~~~l------------------ 614 (758)
+.|+++++.-.... .....+..+++|+.|+++++.-. ..+..+
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 88888887411110 11122345678999999884210 000000
Q ss_pred --cC-CcC--CCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCce
Q 045237 615 --IL-SEY--QFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEW 689 (758)
Q Consensus 615 --lp-~~~--~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 689 (758)
.+ .+. .. ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+.. +..+++|+.|++++|. +..+
T Consensus 263 ~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~-l~~~ 338 (455)
T 3v47_A 263 DPDNFTFKGLEA-SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA--FWGLTHLLKLNLSQNF-LGSI 338 (455)
T ss_dssp CCCTTTTGGGTT-SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSC-CCEE
T ss_pred cCcccccccccc-cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH--hcCcccCCEEECCCCc-cCCc
Confidence 00 011 12 68999999999998888889999999999999999887543332 6788999999999986 5655
Q ss_pred -EECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 690 -TMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 690 -~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
|..++.+++|++|++++|......|..+..+++|++|++++|.
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 5567889999999999998655568889999999999999986
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=6e-22 Score=219.37 Aligned_cols=290 Identities=18% Similarity=0.087 Sum_probs=201.1
Q ss_pred CCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCccccc
Q 045237 403 LRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLR 480 (758)
Q Consensus 403 ~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr 480 (758)
...++++.+..+.... .+ .+. ++|+.|.+.++.... + .+..+++|++|++++|.++.+| ++++++|+
T Consensus 41 l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~----~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT----L---DLSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC----C---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred cCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe----E---ccccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 3456677776333322 22 333 778888887777643 1 1677788888888888887765 77888888
Q ss_pred EEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCCC-CCCCCCccccCcccccccccCCCC
Q 045237 481 CLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCITL-PAPPENYCSSLKNLIFISALHPCS 559 (758)
Q Consensus 481 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~ 559 (758)
+|++++|.++.+| ++++++|++|++++|.+..+| +.++++|++|+++++.. -...++.+++|+.|++.++....
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-
Confidence 8888888888775 778888888888888777764 77788888888876421 12246777888888877765543
Q ss_pred CCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cCCcCCCCCCccEEEEeeccCCC
Q 045237 560 CTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--ILSEYQFPPSLTQLSLSNTELKE 637 (758)
Q Consensus 560 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp~~~~l~~~L~~L~L~~~~l~~ 637 (758)
++ ++.+++|+.|++++|. .. .+ .+..+++|+.|++++ +.+ +| +..+ ++|+.|++++|.+.+
T Consensus 185 -l~--l~~l~~L~~L~l~~N~--l~-~~--~l~~l~~L~~L~Ls~-------N~l~~ip-~~~l-~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNN--IT-KL--DLNQNIQLTFLDCSS-------NKLTEID-VTPL-TQLTYFDCSVNPLTE 247 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSC--CS-CC--CCTTCTTCSEEECCS-------SCCSCCC-CTTC-TTCSEEECCSSCCSC
T ss_pred -ec--cccCCCCCEEECcCCc--CC-ee--ccccCCCCCEEECcC-------CcccccC-cccc-CCCCEEEeeCCcCCC
Confidence 33 7778888888888773 22 22 367778888888887 444 55 5666 888888888888876
Q ss_pred CCcccccCCC-------CCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEEC--------ccccccccee
Q 045237 638 DPMPTLEKLP-------HLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMG--------ARAMTKLESL 702 (758)
Q Consensus 638 ~~~~~l~~l~-------~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~--------~~~l~~L~~L 702 (758)
..+..+.++. +|+.|++++|.+.+..+ .+.+++|+.|++++|..+..+|.. +..+++|+.|
T Consensus 248 ~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 248 LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 5443333333 34455555555554443 457889999999999877777642 4566788888
Q ss_pred eEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 703 IINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 703 ~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
++++|. ++.+| +.++++|+.|++++|.
T Consensus 324 ~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 324 YLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp ECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred ECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 888877 44454 7889999999998876
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=2.4e-22 Score=222.56 Aligned_cols=269 Identities=18% Similarity=0.073 Sum_probs=217.9
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTL 505 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 505 (758)
+++++|.+.++.... . + .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++++++|++|
T Consensus 42 ~~L~~L~Ls~n~l~~----~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD----M-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSSCCCC----C-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred CCCCEEEccCCCccc----C-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 789999999887753 2 2 5889999999999999999886 899999999999999999886 8999999999
Q ss_pred EccCCcCcccchhhcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhh
Q 045237 506 DMPSSYIDHTPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQS 585 (758)
Q Consensus 506 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 585 (758)
++++|.+..+| +.++++|++|+++++......++.+++|+.|++.++...+ .. .++.+++|+.|++++|. ..
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~-~~--~~~~l~~L~~L~ls~n~---l~ 183 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKIT-KL--DVTPQTQLTTLDCSFNK---IT 183 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCC-CC--CCTTCTTCCEEECCSSC---CC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccc-cc--ccccCCcCCEEECCCCc---cc
Confidence 99999999887 8999999999998743222348889999999998886544 33 58889999999999983 33
Q ss_pred hHHHHhhccCCCceEEeeecCCCcccccccC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCcee
Q 045237 586 GLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKL 664 (758)
Q Consensus 586 ~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 664 (758)
.+| +..+++|+.|++++ +.+-. .+..+ ++|+.|++++|.+.+ +| ++.+++|+.|++++|.+.+..
T Consensus 184 ~l~--l~~l~~L~~L~l~~-------N~l~~~~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDT-------NNITKLDLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp CCC--CTTCTTCCEEECCS-------SCCSCCCCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred eec--cccCCCCCEEECcC-------CcCCeeccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 344 78899999999998 55522 46677 999999999999876 44 889999999999999988753
Q ss_pred EEeCCCCCccc----------cEEeeccCCCcCceEECcccccccceeeEeccccCCCCch--------hhcCCCCCcEE
Q 045237 665 ACVGSGGFPKL----------KILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPE--------ELWRIESFRKL 726 (758)
Q Consensus 665 ~~~~~~~~~~L----------~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~--------~l~~l~sL~~L 726 (758)
...+++| +.|++++|..+..+| .+.+++|+.|++++|+.++.+|. .+.++++|++|
T Consensus 250 ----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 250 ----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp ----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred ----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 3345554 556666666666666 46789999999999998777664 24556777888
Q ss_pred EEecCc
Q 045237 727 ELHWPQ 732 (758)
Q Consensus 727 ~l~~c~ 732 (758)
++++|.
T Consensus 324 ~L~~N~ 329 (457)
T 3bz5_A 324 YLNNTE 329 (457)
T ss_dssp ECTTCC
T ss_pred ECCCCc
Confidence 877765
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.1e-22 Score=213.91 Aligned_cols=259 Identities=19% Similarity=0.210 Sum_probs=154.3
Q ss_pred eeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCccc-chhhcccccCcEEEcCC
Q 045237 455 LLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHT-PEDIWNMHKLMHLNFGC 532 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~ 532 (758)
+|++++++++.++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45566666666666655443 356666666666665544 456666666666666665555 55566666666666654
Q ss_pred --CCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcc
Q 045237 533 --ITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQ 610 (758)
Q Consensus 533 --~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 610 (758)
...+|..+. ++|++|++.++.... ..+..+..+++|+.|+++++.-...+..+..+..+++|+.|++++
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~------ 180 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD------ 180 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS------
T ss_pred CcCCccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC------
Confidence 223333332 566666665554443 344456677777777777663222234455666677777777776
Q ss_pred cccc--cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcC
Q 045237 611 LSQM--IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLE 687 (758)
Q Consensus 611 ~~~l--lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 687 (758)
+.+ +| .+ . ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|. +.
T Consensus 181 -n~l~~l~~~~--~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~-l~ 253 (330)
T 1xku_A 181 -TNITTIPQGL--P-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNK-LV 253 (330)
T ss_dssp -SCCCSCCSSC--C-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSSC-CS
T ss_pred -CccccCCccc--c-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCCc-Cc
Confidence 333 33 22 1 67777777777766655666777777777777777665432211 4456777777777764 56
Q ss_pred ceEECcccccccceeeEeccccCCCCch-hhc------CCCCCcEEEEecCc
Q 045237 688 EWTMGARAMTKLESLIINPCAYLKKLPE-ELW------RIESFRKLELHWPQ 732 (758)
Q Consensus 688 ~l~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~------~l~sL~~L~l~~c~ 732 (758)
.+|..+..+++|++|++++|+ ++.+|. .+. ..++|+.|++.++|
T Consensus 254 ~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 254 KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 666666777777777777776 444443 221 23567777777776
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.4e-23 Score=221.09 Aligned_cols=243 Identities=18% Similarity=0.220 Sum_probs=135.1
Q ss_pred CeeEEEEcCCCCCC---CCCccccCcccccEEeccC-CCCc-ccCccccCCCCCcEEEccCCcCc-ccchhhcccccCcE
Q 045237 454 KLLRVLNMGSLVLD---QFPSGIENLFLLRCLKLDV-PSLK-SLPSSLCNLLNLQTLDMPSSYID-HTPEDIWNMHKLMH 527 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~ 527 (758)
.+++.|+++++.+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46777777777776 4677777777888888874 6666 67777777788888888777775 66777777777777
Q ss_pred EEcCCCC---CCCCCCCccccCcccccccccCCCCCCccccCCCC-CCCeEEEEecCchhhhhHHHHhhccCCCceEEee
Q 045237 528 LNFGCIT---LPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLP-NVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLV 603 (758)
Q Consensus 528 L~l~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~ 603 (758)
|+++++. ..|..++.+++|++|++.++...+ ..|..++.++ +|+.|++++| ...+..|..+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~~L~~L~L~~N--~l~~~~~~~~~~l~-------- 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLN-------- 198 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCCEEECCSS--EEEEECCGGGGGCC--------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccC-cCCHHHhhhhhcCcEEECcCC--eeeccCChHHhCCc--------
Confidence 7776521 233344444444444444443332 3455555555 5566666555 23333344444433
Q ss_pred ecCCCcccccccCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccC
Q 045237 604 NKSKGWQLSQMILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSM 683 (758)
Q Consensus 604 ~~~~~~~~~~llp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~ 683 (758)
|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+. +..+++|+.|++++|
T Consensus 199 ---------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 199 ---------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNN 254 (313)
T ss_dssp ---------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSS
T ss_pred ---------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECcCC
Confidence 44444444444444444455555555555555544433222 233455555555554
Q ss_pred CCcCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 684 FWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 684 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.....+|..+..+++|+.|++++|+..+.+|.. .++++|+.+++.+||
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 422244444455555555555555544444443 445555555555544
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=7.7e-23 Score=244.68 Aligned_cols=299 Identities=18% Similarity=0.137 Sum_probs=230.5
Q ss_pred cccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCC-CCCC-CccccCcccccEEeccCCCCccc-CccccCCC
Q 045237 424 IDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLV-LDQF-PSGIENLFLLRCLKLDVPSLKSL-PSSLCNLL 500 (758)
Q Consensus 424 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~ 500 (758)
+.+++++|.+.++... ...+..|.++++|++|+|++|. +..+ |..|+++++|++|+|++|.+..+ |..+++++
T Consensus 22 lp~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 3388999999988775 4456778999999999999996 4455 78899999999999999999865 78899999
Q ss_pred CCcEEEccCCcCcc-cchh--hcccccCcEEEcCCCC--CC--CCCCCccccCcccccccccCCCCCCccccCCC--CCC
Q 045237 501 NLQTLDMPSSYIDH-TPED--IWNMHKLMHLNFGCIT--LP--APPENYCSSLKNLIFISALHPCSCTPDTLGRL--PNV 571 (758)
Q Consensus 501 ~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~--~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L 571 (758)
+|++|+|++|.+.. +|.. +.++++|++|+++++. .. +..++++++|++|++.++.... ..+..++.+ ++|
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGKTL 176 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC-CCSGGGHHHHHCSS
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe-eCHHHcccccCCcc
Confidence 99999999998865 5555 8899999999998732 22 2357889999999988876655 566777766 899
Q ss_pred CeEEEEecCchhhhhHHHHhhccCC------CceEEeeecCCCcc-------------c----------------ccc--
Q 045237 572 QTLKIYGDLSSYQSGLSKSLRELLK------LESLKLVNKSKGWQ-------------L----------------SQM-- 614 (758)
Q Consensus 572 ~~L~l~~~~~~~~~~l~~~l~~~~~------L~~L~L~~~~~~~~-------------~----------------~~l-- 614 (758)
+.|++++| ......+..+..+.+ |+.|+++++.-... + +.+
T Consensus 177 ~~L~L~~n--~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 177 SFFSLAAN--SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp CCCEECCS--BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ceEECCCC--ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 99999988 344444444444443 99999987521000 0 000
Q ss_pred -cC-CcCCC-CCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEE
Q 045237 615 -IL-SEYQF-PPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTM 691 (758)
Q Consensus 615 -lp-~~~~l-~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~ 691 (758)
.+ .+..+ +++|+.|++++|.+....+..+..+++|+.|+|++|.+.+..+.. +.++++|+.|+|++|......|.
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA--FYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT--TTTCSSCCEEEEESCCCSCCCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH--hcCCCCCCEEECCCCCCCccCHH
Confidence 00 11111 278999999999988878888999999999999999887644332 67899999999999874334467
Q ss_pred CcccccccceeeEeccccCCCCc-hhhcCCCCCcEEEEecCc
Q 045237 692 GARAMTKLESLIINPCAYLKKLP-EELWRIESFRKLELHWPQ 732 (758)
Q Consensus 692 ~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~sL~~L~l~~c~ 732 (758)
.+..+++|+.|++++|. +..+| ..+.++++|+.|++++|.
T Consensus 333 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC
T ss_pred HhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC
Confidence 88999999999999997 45554 468899999999999987
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.6e-22 Score=236.76 Aligned_cols=319 Identities=19% Similarity=0.129 Sum_probs=201.0
Q ss_pred CCCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCc-cccCccc
Q 045237 402 ELRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPS-GIENLFL 478 (758)
Q Consensus 402 ~~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~ 478 (758)
.+.++++|.+..+.........+. ++|++|.+.++... ...+..|.++++|++|++++|.++.+|. .|+++++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 346778888774444443444444 77888888777654 3445677788888888888888887775 5788888
Q ss_pred ccEEeccCCCCcccC-ccccCCCCCcEEEccCCcCccc-chhhcccccCcEEEcCCC--CCCCCC---CCccccCccccc
Q 045237 479 LRCLKLDVPSLKSLP-SSLCNLLNLQTLDMPSSYIDHT-PEDIWNMHKLMHLNFGCI--TLPAPP---ENYCSSLKNLIF 551 (758)
Q Consensus 479 Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~--~~~~~~---~~~l~~L~~L~l 551 (758)
|++|++++|.++.+| ..++++++|++|++++|.+... |..+.++++|++|+++++ ...++. ...+++|+.|++
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 888888888887666 4578888888888888877665 445777888888888763 122211 123467888887
Q ss_pred ccccCCCCCCccccCCCCCCCeEEEEecCc--hhhhhHHHHhhccCCCceEEeeecCCCcccccccC-CcCCCC-CCccE
Q 045237 552 ISALHPCSCTPDTLGRLPNVQTLKIYGDLS--SYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQFP-PSLTQ 627 (758)
Q Consensus 552 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~l~-~~L~~ 627 (758)
.++.... ..+..++.+++|+.|.+.++.. .....++..+ ..++|+.|+++++. +....| ++..+. ++|+.
T Consensus 179 ~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~----l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 179 SSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQ----LSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp TTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSC----CCEECTTTTGGGGGSCCCE
T ss_pred CCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCc----ccccChhHhhccCcCCCCE
Confidence 7765544 4566666777777777666530 1111122222 23677777777621 011134 555441 23777
Q ss_pred EEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcC-----ceEE----Ccccccc
Q 045237 628 LSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLE-----EWTM----GARAMTK 698 (758)
Q Consensus 628 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-----~l~~----~~~~l~~ 698 (758)
|++++|.+.+..+..++.+++|++|++++|.+.+..+.. +.++++|+.|+++++..-. .+|. .+..+++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS--LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT--TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhh--hcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 777777776666667777777777777777665433222 5567777777776543111 2232 4556677
Q ss_pred cceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 699 LESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 699 L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
|++|++++|......|..+.++++|++|++++|.
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 7777777776544445556667777777776653
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.5e-22 Score=232.84 Aligned_cols=267 Identities=14% Similarity=0.141 Sum_probs=217.3
Q ss_pred cCCeeEEEEcCCCCCCCCCcc-ccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCcccchh-hcccccCcEE
Q 045237 452 KFKLLRVLNMGSLVLDQFPSG-IENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHL 528 (758)
Q Consensus 452 ~l~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L 528 (758)
.++++++|+++++.+..+|.. +..+++|++|+|++|.++.+|. .++++++|++|+|++|.+..+|.. ++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 367899999999999988865 6789999999999999997765 889999999999999999888765 7899999999
Q ss_pred EcCC--CCCCCCC-CCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeec
Q 045237 529 NFGC--ITLPAPP-ENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNK 605 (758)
Q Consensus 529 ~l~~--~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 605 (758)
++++ ...+|+. ++.+++|++|++.++.... ..+..++.+++|+.|++++|. .. .+ .+..+++|+.|+++++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~--l~-~~--~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNR--LT-HV--DLSLIPSLFHANVSYN 202 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSC--CS-BC--CGGGCTTCSEEECCSS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCC--CC-Cc--ChhhhhhhhhhhcccC
Confidence 9987 3456665 5899999999999887765 667789999999999999984 22 22 2455677777777763
Q ss_pred CC-C----ccc-------ccc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCC
Q 045237 606 SK-G----WQL-------SQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGG 671 (758)
Q Consensus 606 ~~-~----~~~-------~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 671 (758)
.- . ..+ +.+ +| ...+++|+.|+|++|.+.+ ++.++.+++|+.|+|++|.+.+..+.. +..
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~--~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~--~~~ 276 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP--FVK 276 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEE--CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG--GTT
T ss_pred ccccccCCchhheeeccCCcccccc--cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH--hcC
Confidence 21 0 000 111 22 1123789999999999865 478999999999999999988765443 678
Q ss_pred CccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 672 FPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 672 ~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
+++|+.|+|++|. +..+|...+.+|+|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 277 l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 277 MQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred ccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence 9999999999985 78899888889999999999998 66899999999999999999997
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=1.7e-22 Score=230.32 Aligned_cols=301 Identities=18% Similarity=0.141 Sum_probs=217.7
Q ss_pred cccccccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccCcc-cc
Q 045237 420 SLEHIDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLPSS-LC 497 (758)
Q Consensus 420 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~ 497 (758)
.+..+.+.+++|.+.++... ...+..|.++++|++|++++|.++.++ ..++.+++|++|++++|.++.+|.. ++
T Consensus 20 ip~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 20 IPSGLTAAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp CCSCCCTTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred ccccCCCCccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 33334478999999998875 344567899999999999999998664 7899999999999999999988766 89
Q ss_pred CCCCCcEEEccCCcCccc--chhhcccccCcEEEcCCC---CCCC-CCCCccccCcccccccccCCCCCCccccCCCCCC
Q 045237 498 NLLNLQTLDMPSSYIDHT--PEDIWNMHKLMHLNFGCI---TLPA-PPENYCSSLKNLIFISALHPCSCTPDTLGRLPNV 571 (758)
Q Consensus 498 ~L~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~l~~~---~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 571 (758)
++++|++|++++|.+..+ |..+.++++|++|+++++ ..+| ..++.+++|++|++.++.... ..|..++.+++|
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L 174 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDI 174 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCSEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-cChhhhhccccC
Confidence 999999999999988854 678999999999999763 2344 468899999999998887765 678888888888
Q ss_pred CeEEEEecCchhhhhHHHHh-hccCCCceEEeeecCC-Cc-----cc--------------c------------------
Q 045237 572 QTLKIYGDLSSYQSGLSKSL-RELLKLESLKLVNKSK-GW-----QL--------------S------------------ 612 (758)
Q Consensus 572 ~~L~l~~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~-~~-----~~--------------~------------------ 612 (758)
+.|+++++. ...++..+ ..+++|+.|+++++.- .. .+ +
T Consensus 175 ~~L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 175 HHLTLHLSE---SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp EEEEEECSB---STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred ceEecccCc---ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 888888773 23344433 4567777777776321 00 00 0
Q ss_pred cc---------------------------------------cC-C---------cCCCCCCccEEEEeeccCCCCCcccc
Q 045237 613 QM---------------------------------------IL-S---------EYQFPPSLTQLSLSNTELKEDPMPTL 643 (758)
Q Consensus 613 ~l---------------------------------------lp-~---------~~~l~~~L~~L~L~~~~l~~~~~~~l 643 (758)
.+ +| + .... ++|+.|++++|.+. .+|..+
T Consensus 252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~-~~L~~L~l~~n~l~-~ip~~~ 329 (549)
T 2z81_A 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVF-LVPCSF 329 (549)
T ss_dssp TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS-TTCCEEEEESSCCC-CCCHHH
T ss_pred cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc-ccceEEEeccCccc-cCCHHH
Confidence 00 00 0 0001 35666666666654 344444
Q ss_pred -cCCCCCceEEEeccccCCceeEE-eCCCCCccccEEeeccCCCcCceE---ECcccccccceeeEeccccCCCCchhhc
Q 045237 644 -EKLPHLLVLKLKQNSYSGRKLAC-VGSGGFPKLKILHLKSMFWLEEWT---MGARAMTKLESLIINPCAYLKKLPEELW 718 (758)
Q Consensus 644 -~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~lp~~l~ 718 (758)
..+++|++|++++|.+.+..+.. ...+.+++|+.|++++|. ++.++ ..+..+++|++|++++|. ++.+|..+.
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 407 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQ 407 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCC
T ss_pred HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCC-CccCChhhc
Confidence 46888888888888877654321 114667888888888875 55554 236778888888888885 567887777
Q ss_pred CCCCCcEEEEecCc
Q 045237 719 RIESFRKLELHWPQ 732 (758)
Q Consensus 719 ~l~sL~~L~l~~c~ 732 (758)
.+++|++|++++|.
T Consensus 408 ~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 408 WPEKMRFLNLSSTG 421 (549)
T ss_dssp CCTTCCEEECTTSC
T ss_pred ccccccEEECCCCC
Confidence 78888888888775
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=4.7e-22 Score=211.39 Aligned_cols=259 Identities=15% Similarity=0.150 Sum_probs=144.7
Q ss_pred CeeEEEEcCCCCCCCC-CccccCcccccEEeccCCCCccc-CccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcC
Q 045237 454 KLLRVLNMGSLVLDQF-PSGIENLFLLRCLKLDVPSLKSL-PSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFG 531 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 531 (758)
+.|++|++++|.+..+ |..++++++|++|++++|.++.+ |..++++++|++|++++|.+..+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 4566667766666654 34566666677777766666644 5556666677777776666666665544 566666666
Q ss_pred CC--CCCCC-CCCccccCcccccccccCCC-CCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC
Q 045237 532 CI--TLPAP-PENYCSSLKNLIFISALHPC-SCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK 607 (758)
Q Consensus 532 ~~--~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 607 (758)
++ ..+|. .+..+++|+.|++.++.... +..+..+..+ +|+.|+++++. ...+|..+. ++|+.|++++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~--- 202 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK---LTGIPKDLP--ETLNELHLDH--- 202 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB---CSSCCSSSC--SSCSCCBCCS---
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC---CCccCcccc--CCCCEEECCC---
Confidence 52 22332 24556666666665554421 1234445555 66666666652 222333322 4666666665
Q ss_pred Ccccccc---cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccC
Q 045237 608 GWQLSQM---IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSM 683 (758)
Q Consensus 608 ~~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~ 683 (758)
+.+ .| .+..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+. ..+.. +..+++|+.|++++|
T Consensus 203 ----n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~--l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 203 ----NKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG--LPDLKLLQVVYLHTN 274 (332)
T ss_dssp ----SCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT--GGGCTTCCEEECCSS
T ss_pred ----CcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh--hhcCccCCEEECCCC
Confidence 333 23 45555 66666666666665555556666666666666666554 22221 345666666666665
Q ss_pred CCcCceEEC-cc------cccccceeeEeccccC--CCCchhhcCCCCCcEEEEecCc
Q 045237 684 FWLEEWTMG-AR------AMTKLESLIINPCAYL--KKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 684 ~~l~~l~~~-~~------~l~~L~~L~l~~c~~l--~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
. ++.++.. +. ..++|+.|++.+|+.. ...|..+..+++|+.+++++|.
T Consensus 275 ~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 275 N-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp C-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred C-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4 4444321 11 1355666666666643 2344556666666666666654
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=6.1e-22 Score=226.88 Aligned_cols=150 Identities=16% Similarity=0.106 Sum_probs=113.6
Q ss_pred CCCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCccc
Q 045237 402 ELRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFL 478 (758)
Q Consensus 402 ~~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~ 478 (758)
.+..++++.+..+.........+. ++|++|.+.++... ...+..|.++++|++|++++|.++.+| ..|+++++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 456788888885544443444444 88999999888765 445667889999999999999988665 67899999
Q ss_pred ccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCcc--cchhhcccccCcEEEcCCCC--C-CCCCCCccccC----cc
Q 045237 479 LRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDH--TPEDIWNMHKLMHLNFGCIT--L-PAPPENYCSSL----KN 548 (758)
Q Consensus 479 Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~--~-~~~~~~~l~~L----~~ 548 (758)
|++|++++|.++.+|. .++++++|++|++++|.+.. +|..+.++++|++|+++++. . .+..++.+++| ..
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 9999999999988876 58899999999999998875 68889999999999998731 2 23345566666 55
Q ss_pred ccccccc
Q 045237 549 LIFISAL 555 (758)
Q Consensus 549 L~l~~~~ 555 (758)
|++.++.
T Consensus 182 L~l~~n~ 188 (570)
T 2z63_A 182 LDLSLNP 188 (570)
T ss_dssp EECTTCC
T ss_pred cccCCCC
Confidence 5555544
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=4.8e-23 Score=216.93 Aligned_cols=221 Identities=21% Similarity=0.244 Sum_probs=173.0
Q ss_pred ccccEEeccCCCCc---ccCccccCCCCCcEEEccC-CcCc-ccchhhcccccCcEEEcCCCCCCCCCCCccccCccccc
Q 045237 477 FLLRCLKLDVPSLK---SLPSSLCNLLNLQTLDMPS-SYID-HTPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIF 551 (758)
Q Consensus 477 ~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~-~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l 551 (758)
.+++.|+++++.++ .+|..++++++|++|++++ |.+. .+|..+.++++|++|+++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n------------------ 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT------------------ 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE------------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC------------------
Confidence 57899999999988 5899999999999999995 6554 67888888888888887652
Q ss_pred ccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc---cC-CcCCCCCCccE
Q 045237 552 ISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM---IL-SEYQFPPSLTQ 627 (758)
Q Consensus 552 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l---lp-~~~~l~~~L~~ 627 (758)
...+ ..|..++.+++|++|++++| ...+.+|..+..+++|+.|++++ +.+ +| .+..++++|+.
T Consensus 112 ---~l~~-~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~-------N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 112 ---NVSG-AIPDFLSQIKTLVTLDFSYN--ALSGTLPPSISSLPNLVGITFDG-------NRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp ---CCEE-ECCGGGGGCTTCCEEECCSS--EEESCCCGGGGGCTTCCEEECCS-------SCCEEECCGGGGCCCTTCCE
T ss_pred ---eeCC-cCCHHHhCCCCCCEEeCCCC--ccCCcCChHHhcCCCCCeEECcC-------CcccCcCCHHHhhhhhcCcE
Confidence 1111 34555666666777777666 34445666666777777777766 333 66 67777239999
Q ss_pred EEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEecc
Q 045237 628 LSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPC 707 (758)
Q Consensus 628 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c 707 (758)
|++++|.+.+..|..++.++ |+.|++++|.+.+..+.. +..+++|+.|++++|. +...+..+..+++|++|++++|
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL--FGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG--CCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSS
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH--HhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCC
Confidence 99999998888889999997 999999999887655443 6789999999999986 4444444778999999999999
Q ss_pred ccCCCCchhhcCCCCCcEEEEecCc
Q 045237 708 AYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 708 ~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.....+|..+..+++|+.|++++|+
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSE
T ss_pred cccCcCChHHhcCcCCCEEECcCCc
Confidence 9776899999999999999999986
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=4.1e-22 Score=211.72 Aligned_cols=259 Identities=14% Similarity=0.111 Sum_probs=151.9
Q ss_pred CeeEEEEcCCCCCCCCCc-cccCcccccEEeccCCCCccc-CccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcC
Q 045237 454 KLLRVLNMGSLVLDQFPS-GIENLFLLRCLKLDVPSLKSL-PSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFG 531 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 531 (758)
+.|++|++++|.++.+|. .++++++|++|++++|.++.+ |..+.++++|++|++++|.+..+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 345555555555554433 455555555555555555544 4455555555555555555555554443 455555555
Q ss_pred CC--CCCC-CCCCccccCcccccccccCCC-CCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC
Q 045237 532 CI--TLPA-PPENYCSSLKNLIFISALHPC-SCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK 607 (758)
Q Consensus 532 ~~--~~~~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 607 (758)
++ ..++ ..+..+++|+.|++.++.... +..+..+..+++|+.|+++++. ...+|..+. ++|+.|++++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~--- 201 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---ITTIPQGLP--PSLTELHLDG--- 201 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC---CCSCCSSCC--TTCSEEECTT---
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc---cccCCcccc--ccCCEEECCC---
Confidence 42 1111 123445555555555444321 1234556667777777777662 223333332 6777777776
Q ss_pred Ccccccc---cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccC
Q 045237 608 GWQLSQM---IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSM 683 (758)
Q Consensus 608 ~~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~ 683 (758)
+.+ .| .+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.. .+.. +..+++|+.|++++|
T Consensus 202 ----n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~--l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 202 ----NKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGG--LADHKYIQVVYLHNN 273 (330)
T ss_dssp ----SCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTT--TTTCSSCCEEECCSS
T ss_pred ----CcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChh--hccCCCcCEEECCCC
Confidence 333 34 66666 778888888887766666677778888888888777652 2222 556778888888877
Q ss_pred CCcCceEEC-c------ccccccceeeEeccccCC--CCchhhcCCCCCcEEEEecC
Q 045237 684 FWLEEWTMG-A------RAMTKLESLIINPCAYLK--KLPEELWRIESFRKLELHWP 731 (758)
Q Consensus 684 ~~l~~l~~~-~------~~l~~L~~L~l~~c~~l~--~lp~~l~~l~sL~~L~l~~c 731 (758)
. ++.++.. + ...++|+.|++.+|+... ..|..+..+++|+.+++++|
T Consensus 274 ~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 N-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp C-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred c-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 5 5555432 1 124778889999888532 34567888889999998876
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=3.7e-21 Score=225.23 Aligned_cols=291 Identities=20% Similarity=0.153 Sum_probs=141.3
Q ss_pred cceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCC-CCCccccCcccccEEeccCCCCc------ccCc----cc
Q 045237 428 LHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLD-QFPSGIENLFLLRCLKLDVPSLK------SLPS----SL 496 (758)
Q Consensus 428 Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~------~lp~----~i 496 (758)
|+.|.+.++... ...+..|..+++|++|++++|.+. ..|..++.+++|++|+++++... .+|. .+
T Consensus 250 L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 250 LTMLDLSYNNLN----VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp CCEEECTTSCCC----EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CCEEECCCCCcC----ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 555555555443 222344555555555555555554 23344555555555555543211 2332 34
Q ss_pred cCCCCCcEEEccCCcCcccc-hhhcccccCcEEEcCCC-------------------------------CCCCCCCCccc
Q 045237 497 CNLLNLQTLDMPSSYIDHTP-EDIWNMHKLMHLNFGCI-------------------------------TLPAPPENYCS 544 (758)
Q Consensus 497 ~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~-------------------------------~~~~~~~~~l~ 544 (758)
..+++|++|++++|.+..++ ..+..+++|++|+++++ ...|..+..++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 45555555555555444443 22445555555554431 11123344455
Q ss_pred cCcccccccccCCCCCCc-cccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccC-CcCCCC
Q 045237 545 SLKNLIFISALHPCSCTP-DTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQFP 622 (758)
Q Consensus 545 ~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~l~ 622 (758)
+|+.|++.++.... ..+ ..+..+++|+.|++++| ......+..+..+++|+.|+++++.- .--..+| .+..+
T Consensus 406 ~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~p~~~~~l- 479 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQ-ELTGQEWRGLENIFEIYLSYN--KYLQLTRNSFALVPSLQRLMLRRVAL--KNVDSSPSPFQPL- 479 (680)
T ss_dssp TCCEEECCSSCCEE-ECCSGGGTTCTTCCEEECCSC--SEEECCTTTTTTCTTCCEEECTTSCC--BCTTCSSCTTTTC-
T ss_pred CCCEEeCCCCcCcc-ccCcccccCcccccEEecCCC--CcceeChhhhhcCcccccchhccccc--cccccCCcccccC-
Confidence 55555554444322 122 34455555555555554 22222223334444444444444110 0001145 55566
Q ss_pred CCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCce-------eEEeCCCCCccccEEeeccCCCcCceEE-Ccc
Q 045237 623 PSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRK-------LACVGSGGFPKLKILHLKSMFWLEEWTM-GAR 694 (758)
Q Consensus 623 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-------~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~ 694 (758)
++|+.|++++|.+....+..+..+++|++|++++|.+.+.. +... +.++++|+.|+|++|. ++.+|. .+.
T Consensus 480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~N~-l~~i~~~~~~ 557 (680)
T 1ziw_A 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF-LKGLSHLHILNLESNG-FDEIPVEVFK 557 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT-TTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh-hcCCCCCCEEECCCCC-CCCCCHHHcc
Confidence 67777777777766555555666777777777766554321 0011 3455666666666653 445553 245
Q ss_pred cccccceeeEeccccCCCCchh-hcCCCCCcEEEEecC
Q 045237 695 AMTKLESLIINPCAYLKKLPEE-LWRIESFRKLELHWP 731 (758)
Q Consensus 695 ~l~~L~~L~l~~c~~l~~lp~~-l~~l~sL~~L~l~~c 731 (758)
.+++|+.|++++|. ++.+|.. +.++++|+.|++++|
T Consensus 558 ~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 558 DLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred cccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCC
Confidence 56666666666554 3344432 345555555555554
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.1e-21 Score=208.54 Aligned_cols=280 Identities=17% Similarity=0.098 Sum_probs=215.8
Q ss_pred eeEEEeeCCCCccccccccccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCC-CccccCcccccEEec
Q 045237 406 IKRFAVPKNLTKFVSLEHIDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQF-PSGIENLFLLRCLKL 484 (758)
Q Consensus 406 ~r~Ls~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L 484 (758)
.+.+.+. +......+..+.++++.|.+.++... ...+..|.++++|++|++++|.++.+ |..++++++|++|++
T Consensus 35 l~~l~~~-~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 35 LRVVQCS-DLGLKAVPKEISPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp TTEEECC-SSCCSSCCSCCCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CCEEECC-CCCccccCCCCCCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3445554 22222344444478999999988775 44556789999999999999999966 788999999999999
Q ss_pred cCCCCcccCccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCCCC-----CCCCCCCccccCcccccccccCCC
Q 045237 485 DVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGCIT-----LPAPPENYCSSLKNLIFISALHPC 558 (758)
Q Consensus 485 ~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~ 558 (758)
++|.++.+|..+. ++|++|++++|.+..+|.. +.++++|++|+++++. ..+..+..+ +|+.|++.++....
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 9999999998876 8999999999999999765 8899999999998732 335556667 89999988776543
Q ss_pred CCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc---cC-CcCCCCCCccEEEEeecc
Q 045237 559 SCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM---IL-SEYQFPPSLTQLSLSNTE 634 (758)
Q Consensus 559 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l---lp-~~~~l~~~L~~L~L~~~~ 634 (758)
+|..+. ++|+.|++++| ......+..+..+++|+.|++++ +.+ .| ++..+ ++|+.|++++|.
T Consensus 187 --l~~~~~--~~L~~L~l~~n--~i~~~~~~~l~~l~~L~~L~L~~-------N~l~~~~~~~~~~l-~~L~~L~L~~N~ 252 (332)
T 2ft3_A 187 --IPKDLP--ETLNELHLDHN--KIQAIELEDLLRYSKLYRLGLGH-------NQIRMIENGSLSFL-PTLRELHLDNNK 252 (332)
T ss_dssp --CCSSSC--SSCSCCBCCSS--CCCCCCTTSSTTCTTCSCCBCCS-------SCCCCCCTTGGGGC-TTCCEEECCSSC
T ss_pred --cCcccc--CCCCEEECCCC--cCCccCHHHhcCCCCCCEEECCC-------CcCCcCChhHhhCC-CCCCEEECCCCc
Confidence 555554 79999999998 34444456788999999999998 444 44 67788 999999999999
Q ss_pred CCCCCcccccCCCCCceEEEeccccCCceeEEeC----CCCCccccEEeeccCCCc--CceEECcccccccceeeEeccc
Q 045237 635 LKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVG----SGGFPKLKILHLKSMFWL--EEWTMGARAMTKLESLIINPCA 708 (758)
Q Consensus 635 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~----~~~~~~L~~L~L~~~~~l--~~l~~~~~~l~~L~~L~l~~c~ 708 (758)
+. .+|..+..+++|+.|++++|.+.+....... ...+++|+.|++++|+.. ...|..+..+++|+.|++++|.
T Consensus 253 l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 253 LS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred Ce-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 86 7788899999999999999988654322110 112578999999999843 2345567789999999999886
No 47
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.85 E-value=3.2e-21 Score=221.68 Aligned_cols=265 Identities=16% Similarity=0.238 Sum_probs=181.5
Q ss_pred eecchhhHHHHHHHhcCCCCCC----CccccCcceehHHHHHHHhCcccc-cccC-CeeEEEEECCCCCHHHHHHHH---
Q 045237 95 VYESEKAIDTFFTTIMQPQSSE----SESESTSYKDALVGLQKAFNSNHV-KFYF-DCRAWVRVSIQYNFKKILDDI--- 165 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~~----~~~~~~~~~~~ivGa~~vy~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~~i--- 165 (758)
++||+.+++++.++|....... ..++.|++|+++ |+.+|++.++ +.+| +.++||+++.. +...+...+
T Consensus 126 ~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtL--a~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVL--AAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp CCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHH--HHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred ecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHH--HHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 4599999999999997531110 011122222222 6999997666 8899 58999999876 444444443
Q ss_pred HHhhCCCCCC-ccccCchhhhHHHHHHHhcCC--CeEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCCccccCc--
Q 045237 166 IKSVMPASGL-SEIIGKDYTLKKSILRDYLTN--KKYMTVLDDIYHDMIWNDLREALPDYQNGSRVLITVVDPDILTS-- 240 (758)
Q Consensus 166 ~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDDvw~~~~w~~l~~~~~~~~~gS~iivTTR~~~vL~~-- 240 (758)
+..++..... .....+.+... ..+++.+.+ +++||||||||+..+++. .++||+||||||++.++..
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAK-DRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHH-HHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCC
T ss_pred HHHhccccccccCCCCCHHHHH-HHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHhcC
Confidence 4455431111 11223566677 788888866 789999999999766543 2569999999999986221
Q ss_pred ---c--------------cc---------cchhhhcccc-----------ccccccccccccccchhhhhhccccchhhh
Q 045237 241 ---F--------------EL---------ENGEKIGSDS-----------VLVGGPLFRIKYEGWQFFLLYCGCKSLESQ 283 (758)
Q Consensus 241 ---~--------------~l---------~~~~~i~~~i-----------~~~g~~L~~~~~~~W~~~~~~~~l~~l~~~ 283 (758)
+ ++ ....+.+.+| +.+|+.|+.. ...|... ++.+...
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~-~~~w~~~-----l~~l~~~ 348 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDF-PNRWEYY-----LKQLQNK 348 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS-TTCHHHH-----HHHHHSC
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcC-chhHHHH-----HHHHHHh
Confidence 2 22 1112233333 5666666622 3468877 5554432
Q ss_pred hh--------cCCCchhHHHhhccCCcchhHHHHHhHhcccCCCceeeHhHHHHHHHHcCCCCCChHHHHHHHHHHHHhC
Q 045237 284 MM--------EMENEPTALLFCSIFELPLYLKFCCFYLCVFYGNLEISTRQLYQLWMAEGFVAHNSEANAEEYLKELISR 355 (758)
Q Consensus 284 ~~--------~~~~~i~~~L~~Sy~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~Lv~~ 355 (758)
.. .....+..++..||+.||++.|.||++||+||+++.|+.+.++.+|.++ .+.+..++++|+++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNK 421 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHT
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhC
Confidence 21 0114688999999999999999999999999999999999999999653 34578899999999
Q ss_pred ccccccccCCCCCeeEEEcCHHHHHHHHHHh
Q 045237 356 GLIKVGKRSAGGKIKTCSVPSSVWARLVVLA 386 (758)
Q Consensus 356 sll~~~~~~~~~~~~~~~mHdli~dla~~i~ 386 (758)
||++.... +...+|+||++++++++...
T Consensus 422 ~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 422 SLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred cCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 99986542 33458999999999998873
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.4e-21 Score=207.02 Aligned_cols=229 Identities=18% Similarity=0.169 Sum_probs=169.8
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTL 505 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 505 (758)
.+++.|.+.++... . ++..+.++++|++|+|++|.++.+|..++++++|++|++++|.++.+|..++++++|++|
T Consensus 81 ~~l~~L~L~~n~l~----~-lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP----Q-FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS----S-CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCch----h-cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 44556666555553 2 234456699999999999999999999999999999999999999999999999999999
Q ss_pred EccCC-cCcccchhhcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhh
Q 045237 506 DMPSS-YIDHTPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQ 584 (758)
Q Consensus 506 ~L~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 584 (758)
++++| .+..+|..+... ..+..++.+++|++|++.++... .+|..++.+++|+.|++++|. .
T Consensus 156 ~L~~n~~~~~~p~~~~~~------------~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~---l 218 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST------------DASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSP---L 218 (328)
T ss_dssp EEEEETTCCCCCSCSEEE------------C-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSC---C
T ss_pred ECCCCCCccccChhHhhc------------cchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCC---C
Confidence 99998 677888776541 11223444555666665555433 466677778888888888772 3
Q ss_pred hhHHHHhhccCCCceEEeeecCCCcccccccC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCce
Q 045237 585 SGLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRK 663 (758)
Q Consensus 585 ~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 663 (758)
..+|..+..+++|+.|++++|.. ...+| ++..+ ++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+..
T Consensus 219 ~~l~~~l~~l~~L~~L~Ls~n~~----~~~~p~~~~~l-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 219 SALGPAIHHLPKLEELDLRGCTA----LRNYPPIFGGR-APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp CCCCGGGGGCTTCCEEECTTCTT----CCBCCCCTTCC-CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CcCchhhccCCCCCEEECcCCcc----hhhhHHHhcCC-CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 34566677788888888877310 11266 77777 88888888888877788888888888888888888888777
Q ss_pred eEEeCCCCCccccEEeeccC
Q 045237 664 LACVGSGGFPKLKILHLKSM 683 (758)
Q Consensus 664 ~~~~~~~~~~~L~~L~L~~~ 683 (758)
|.. +..+++|+.+.+..+
T Consensus 294 P~~--l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 294 PSL--IAQLPANCIILVPPH 311 (328)
T ss_dssp CGG--GGGSCTTCEEECCGG
T ss_pred cHH--HhhccCceEEeCCHH
Confidence 655 567788888877653
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.3e-20 Score=218.70 Aligned_cols=127 Identities=18% Similarity=0.160 Sum_probs=102.5
Q ss_pred CCCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCc-cccCccc
Q 045237 402 ELRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPS-GIENLFL 478 (758)
Q Consensus 402 ~~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~ 478 (758)
.|..+++|.+..+.........+. ++|+.|.+.++... .+.+..|.++++|++|+|++|.++.+|. .|++|++
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 456788998886655554445555 88999999888775 4556778899999999999999988774 5788999
Q ss_pred ccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCcc--cchhhcccccCcEEEcCC
Q 045237 479 LRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDH--TPEDIWNMHKLMHLNFGC 532 (758)
Q Consensus 479 Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~ 532 (758)
|++|++++|.++.+|. .+++|++|++|++++|.+.. +|..+..+++|++|++++
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 9999999999988876 47899999999999998765 477788899999998875
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=6.7e-21 Score=204.33 Aligned_cols=246 Identities=15% Similarity=0.173 Sum_probs=145.9
Q ss_pred eeEEEEcCCCCCCCCCc-cccCcccccEEeccCCCCcccC-ccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcC
Q 045237 455 LLRVLNMGSLVLDQFPS-GIENLFLLRCLKLDVPSLKSLP-SSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFG 531 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~ 531 (758)
+|++|++++|.++.+|. .++++++|++|++++|.++.++ ..+.++++|++|++++|.+..+|.. +.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56666666666665543 5666666666666666666443 3456666666666666666666554 5566666666665
Q ss_pred CCCCCCCCCCccccCcccccccccCCCCCCc--cccCCCCCCCeEEEEecCchhhhhH-HHHhhccCCCceEEeeecCCC
Q 045237 532 CITLPAPPENYCSSLKNLIFISALHPCSCTP--DTLGRLPNVQTLKIYGDLSSYQSGL-SKSLRELLKLESLKLVNKSKG 608 (758)
Q Consensus 532 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l-~~~l~~~~~L~~L~L~~~~~~ 608 (758)
+ +.... ++ ..+..+++|+.|++++|. ....+ +..+..+++|+.|+++++.
T Consensus 133 ~---------------------n~l~~--l~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~-- 185 (353)
T 2z80_A 133 G---------------------NPYKT--LGETSLFSHLTKLQILRVGNMD--TFTKIQRKDFAGLTFLEELEIDASD-- 185 (353)
T ss_dssp T---------------------CCCSS--SCSSCSCTTCTTCCEEEEEESS--SCCEECTTTTTTCCEEEEEEEEETT--
T ss_pred C---------------------CCCcc--cCchhhhccCCCCcEEECCCCc--cccccCHHHccCCCCCCEEECCCCC--
Confidence 4 22211 22 245556666666666651 12222 3445556666666666621
Q ss_pred cccccccC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEe-CCCCCccccEEeeccCCCc
Q 045237 609 WQLSQMIL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACV-GSGGFPKLKILHLKSMFWL 686 (758)
Q Consensus 609 ~~~~~llp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l 686 (758)
+..+.| .+..+ ++|+.|++++|.+.......+..+++|+.|++++|.+.+..+... .....+.++.++++++. +
T Consensus 186 --l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l 261 (353)
T 2z80_A 186 --LQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-I 261 (353)
T ss_dssp --CCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-C
T ss_pred --cCccCHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-c
Confidence 011145 66666 777777777777643322234457778888887777665432211 02234567777777654 2
Q ss_pred C-----ceEECcccccccceeeEeccccCCCCchhh-cCCCCCcEEEEecCc
Q 045237 687 E-----EWTMGARAMTKLESLIINPCAYLKKLPEEL-WRIESFRKLELHWPQ 732 (758)
Q Consensus 687 ~-----~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~sL~~L~l~~c~ 732 (758)
. .+|..+..+++|+.|++++|. ++.+|..+ ..+++|++|++++||
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 2 356566778889999998886 56788764 788889999988876
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=202.53 Aligned_cols=247 Identities=17% Similarity=0.134 Sum_probs=167.4
Q ss_pred cccccccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCC-CccccCcccccEEeccCCCCcccCcc-cc
Q 045237 420 SLEHIDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQF-PSGIENLFLLRCLKLDVPSLKSLPSS-LC 497 (758)
Q Consensus 420 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~ 497 (758)
.+..+.+++++|.+.++... ......|.++++|++|++++|.++.+ |..++++++|++|++++|.++.+|.. ++
T Consensus 46 iP~~~~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 46 IPSGLTEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp CCTTCCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred ccccccccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 44444478999999998875 34555789999999999999999966 56799999999999999999999877 89
Q ss_pred CCCCCcEEEccCCcCcccch--hhcccccCcEEEcCCC---CCC-CCCCCccccCcccccccccCCCCCCccccCCCCCC
Q 045237 498 NLLNLQTLDMPSSYIDHTPE--DIWNMHKLMHLNFGCI---TLP-APPENYCSSLKNLIFISALHPCSCTPDTLGRLPNV 571 (758)
Q Consensus 498 ~L~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~---~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 571 (758)
++++|++|++++|.+..+|. .+.++++|++|+++++ ..+ +..++.+++|++|++.++.... ..+..++.+++|
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L 200 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEPKSLKSIQNV 200 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCSEE
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-cCHHHHhccccC
Confidence 99999999999999999987 6888999999998763 222 3457778888888877776554 556777888888
Q ss_pred CeEEEEecCchhhhhHHHH-hhccCCCceEEeeecCCCcccccc--cC--C---cCCCCCCccEEEEeeccCCC----CC
Q 045237 572 QTLKIYGDLSSYQSGLSKS-LRELLKLESLKLVNKSKGWQLSQM--IL--S---EYQFPPSLTQLSLSNTELKE----DP 639 (758)
Q Consensus 572 ~~L~l~~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~~~~~~l--lp--~---~~~l~~~L~~L~L~~~~l~~----~~ 639 (758)
+.|+++++. ...++.. +..+++|+.|++++ +.+ ++ . .... +.++.+++.++.+.+ .+
T Consensus 201 ~~L~l~~n~---l~~~~~~~~~~~~~L~~L~L~~-------n~l~~~~~~~l~~~~~~-~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 201 SHLILHMKQ---HILLLEIFVDVTSSVECLELRD-------TDLDTFHFSELSTGETN-SLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp EEEEEECSC---STTHHHHHHHHTTTEEEEEEES-------CBCTTCCCC------CC-CCCCEEEEESCBCCHHHHHHH
T ss_pred CeecCCCCc---cccchhhhhhhcccccEEECCC-------Ccccccccccccccccc-chhhccccccccccCcchhhh
Confidence 888888872 3344443 33466666666666 222 10 0 1112 445555555554432 13
Q ss_pred cccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCC
Q 045237 640 MPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMF 684 (758)
Q Consensus 640 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~ 684 (758)
|..+..+++|+.|++++|.+.. .+... +..+++|+.|++++|+
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~-i~~~~-~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKS-VPDGI-FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCC-CCTTT-TTTCTTCCEEECCSSC
T ss_pred HHHHhcccCCCEEECCCCCCCc-cCHHH-HhcCCCCCEEEeeCCC
Confidence 3344455555555555554442 11111 2344455555555443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-20 Score=198.49 Aligned_cols=125 Identities=19% Similarity=0.186 Sum_probs=71.3
Q ss_pred CeeEEEEcCCCCCCCCCcc-ccCcccccEEeccCCCCccc---CccccCCCCCcEEEccCCcCcccchhhcccccCcEEE
Q 045237 454 KLLRVLNMGSLVLDQFPSG-IENLFLLRCLKLDVPSLKSL---PSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLN 529 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 529 (758)
++|+.|++++|.++.+|.. ++++++|++|++++|.++.+ |..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 4567777777777666644 56677777777777766643 4555667777777777776666666666677777777
Q ss_pred cCCC--CCCC--CCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEec
Q 045237 530 FGCI--TLPA--PPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGD 579 (758)
Q Consensus 530 l~~~--~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 579 (758)
++++ ...+ ..+..+++|+.|++.++.... ..+..++.+++|+.|++++|
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCC
Confidence 6652 1121 234444444444444443322 23333444444444444444
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=1.2e-19 Score=200.84 Aligned_cols=281 Identities=20% Similarity=0.210 Sum_probs=170.9
Q ss_pred CCceeEEEeeCCCCccccccccccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEE
Q 045237 403 LRTIKRFAVPKNLTKFVSLEHIDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCL 482 (758)
Q Consensus 403 ~~~~r~Ls~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L 482 (758)
+..++.+.+..+.... .+. ..++++.|.+.++..... + ...++|++|++++|.++.+| .++++++|++|
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~-~~~~L~~L~l~~n~l~~l-----~---~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPE-LPQSLKSLLVDNNNLKAL-----S---DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCC-CCTTCCEEECCSSCCSCC-----C---SCCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCc-ccc-ccCCCcEEECCCCccCcc-----c---CCCCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence 4567777776333222 221 116778887777665421 1 11257888888888887777 48888888888
Q ss_pred eccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCC--CCCCCCCCccccCcccccccccCCCCC
Q 045237 483 KLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCI--TLPAPPENYCSSLKNLIFISALHPCSC 560 (758)
Q Consensus 483 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~ 560 (758)
++++|.++.+|..+ .+|++|++++|.+..+| .+.++++|++|+++++ ..+|.. .++|++|++.++... .
T Consensus 159 ~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~--~ 229 (454)
T 1jl5_A 159 DVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE--E 229 (454)
T ss_dssp ECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS--S
T ss_pred ECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC--c
Confidence 88888887777544 47888888888877777 5778888888887763 222322 246777777666543 3
Q ss_pred CccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cC-C----------------cCCC
Q 045237 561 TPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--IL-S----------------EYQF 621 (758)
Q Consensus 561 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp-~----------------~~~l 621 (758)
+| .++.+++|+.|++++|. ...+|. ..++|+.|++++| .+ +| . +..+
T Consensus 230 lp-~~~~l~~L~~L~l~~N~---l~~l~~---~~~~L~~L~l~~N-------~l~~l~~~~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNL---LKTLPD---LPPSLEALNVRDN-------YLTDLPELPQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSC---CSSCCS---CCTTCCEEECCSS-------CCSCCCCCCTTCCEEECCSSCCSEESCC
T ss_pred cc-ccCCCCCCCEEECCCCc---CCcccc---cccccCEEECCCC-------cccccCcccCcCCEEECcCCccCcccCc
Confidence 44 47777788888887763 222332 2356777777662 22 22 1 1112
Q ss_pred CCCccEEEEeeccCCCCCcccccCC-CCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccc
Q 045237 622 PPSLTQLSLSNTELKEDPMPTLEKL-PHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLE 700 (758)
Q Consensus 622 ~~~L~~L~L~~~~l~~~~~~~l~~l-~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~ 700 (758)
|++|+.|++++|.+.+ +..+ ++|+.|++++|.+.+ .+ ..+++|+.|++++|. ++.+|. .+++|+
T Consensus 296 ~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp-----~~~~~L~~L~L~~N~-l~~lp~---~l~~L~ 360 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LP-----ALPPRLERLIASFNH-LAEVPE---LPQNLK 360 (454)
T ss_dssp CTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CC-----CCCTTCCEEECCSSC-CSCCCC---CCTTCC
T ss_pred CCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc-cc-----ccCCcCCEEECCCCc-cccccc---hhhhcc
Confidence 2455555555554432 1223 478888888877765 21 236889999998875 667776 478899
Q ss_pred eeeEeccccCC--CCchhhcCC-------------CCCcEEEEecCc
Q 045237 701 SLIINPCAYLK--KLPEELWRI-------------ESFRKLELHWPQ 732 (758)
Q Consensus 701 ~L~l~~c~~l~--~lp~~l~~l-------------~sL~~L~l~~c~ 732 (758)
+|++++|+... .+|..+..+ ++|+.|++++|+
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 99999988666 677777777 789999998876
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=5.7e-20 Score=213.18 Aligned_cols=323 Identities=15% Similarity=0.134 Sum_probs=204.5
Q ss_pred CCCceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCc-cccCccc
Q 045237 402 ELRTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPS-GIENLFL 478 (758)
Q Consensus 402 ~~~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~ 478 (758)
....++.|.+..+.........+. ++|++|.+.++... .+++..|.++++|++|++++|.++.+|. .|+++++
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~----~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC----CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 456678888874444443444455 78888888887765 4456678888888888888888887764 4788888
Q ss_pred ccEEeccCCCCc--ccCccccCCCCCcEEEccCCcCcccc-hhhcccccCc----EEEcCCC--CCC-------------
Q 045237 479 LRCLKLDVPSLK--SLPSSLCNLLNLQTLDMPSSYIDHTP-EDIWNMHKLM----HLNFGCI--TLP------------- 536 (758)
Q Consensus 479 Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~----~L~l~~~--~~~------------- 536 (758)
|++|++++|.++ .+|..++++++|++|++++|.+..++ ..+..+.+++ .++++.+ ..+
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l 229 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 229 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhh
Confidence 888888888876 45677788888888888888776653 3344333322 1111110 000
Q ss_pred ---------------------------------------------------------------------CCC--------
Q 045237 537 ---------------------------------------------------------------------APP-------- 539 (758)
Q Consensus 537 ---------------------------------------------------------------------~~~-------- 539 (758)
+..
T Consensus 230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 309 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS 309 (635)
T ss_dssp EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred hhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence 000
Q ss_pred --------------CCccccCcccccccccCCC------------------CCCccccCCCCCCCeEEEEecCchh----
Q 045237 540 --------------ENYCSSLKNLIFISALHPC------------------SCTPDTLGRLPNVQTLKIYGDLSSY---- 583 (758)
Q Consensus 540 --------------~~~l~~L~~L~l~~~~~~~------------------~~~~~~l~~l~~L~~L~l~~~~~~~---- 583 (758)
+....+|+.|.+.++.... ...+.....+++|+.|+++.+....
T Consensus 310 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 310 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp EEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred cccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccc
Confidence 0001122222222221100 0001122346677888777653110
Q ss_pred -------------------hhhHHHHhhccCCCceEEeeecCC-----Cc-------------ccccc---cC-CcCCCC
Q 045237 584 -------------------QSGLSKSLRELLKLESLKLVNKSK-----GW-------------QLSQM---IL-SEYQFP 622 (758)
Q Consensus 584 -------------------~~~l~~~l~~~~~L~~L~L~~~~~-----~~-------------~~~~l---lp-~~~~l~ 622 (758)
....+..+..+++|+.+++..+.. .. ..+.+ .| .+..+
T Consensus 390 ~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~- 468 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL- 468 (635)
T ss_dssp CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-
T ss_pred ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc-
Confidence 011122344566777777764210 00 00222 34 45556
Q ss_pred CCccEEEEeeccCC-CCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceE-ECcccccccc
Q 045237 623 PSLTQLSLSNTELK-EDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWT-MGARAMTKLE 700 (758)
Q Consensus 623 ~~L~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~ 700 (758)
++|+.|++++|... ...|..+..+++|++|+|++|.+.+..+.. +.++++|+.|+|++|. +..++ ..+..+++|+
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~--f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCC
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH--HcCCCCCCEEECCCCc-CCCCChhHHhCCCCCC
Confidence 89999999998643 345678899999999999999887654433 6789999999999986 66664 4578899999
Q ss_pred eeeEeccccCCCCchhhcCC-CCCcEEEEecCc
Q 045237 701 SLIINPCAYLKKLPEELWRI-ESFRKLELHWPQ 732 (758)
Q Consensus 701 ~L~l~~c~~l~~lp~~l~~l-~sL~~L~l~~c~ 732 (758)
.|++++|......|..+.++ ++|+.|++++||
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999999666667778887 689999998865
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=2.5e-19 Score=204.40 Aligned_cols=231 Identities=22% Similarity=0.147 Sum_probs=128.5
Q ss_pred CeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCC
Q 045237 454 KLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCI 533 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 533 (758)
++|+.|++++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++++|.+..+|. .+++|++|+++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 345555555555555544 34455555555555555554 44555555555555555544 3445555555441
Q ss_pred --CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCccc
Q 045237 534 --TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQL 611 (758)
Q Consensus 534 --~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~ 611 (758)
..+|.. +++|++|++.+|.... +|. .+++|+.|++++|. ...+| ..+++|+.|++++
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N~l~~--l~~---~~~~L~~L~L~~N~---l~~l~---~~~~~L~~L~Ls~------- 190 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDNQLAS--LPA---LPSELCKLWAYNNQ---LTSLP---MLPSGLQELSVSD------- 190 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC---CSCCC---CCCTTCCEEECCS-------
T ss_pred CCCcCCCC---CCCCCEEECcCCcCCC--cCC---ccCCCCEEECCCCC---CCCCc---ccCCCCcEEECCC-------
Confidence 122221 2455555555443322 222 23456666666652 22233 3346666666666
Q ss_pred ccc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCce
Q 045237 612 SQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEW 689 (758)
Q Consensus 612 ~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 689 (758)
+.+ +|. .+++|+.|++++|.+. .+|. .+++|+.|++++|.+.+. + ..+++|+.|+|++|. ++.+
T Consensus 191 N~l~~l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~l-p-----~~l~~L~~L~Ls~N~-L~~l 256 (622)
T 3g06_A 191 NQLASLPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSL-P-----VLPSELKELMVSGNR-LTSL 256 (622)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCC-C-----CCCTTCCEEECCSSC-CSCC
T ss_pred CCCCCCCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcC-C-----CCCCcCcEEECCCCC-CCcC
Confidence 333 221 1267777777777764 3332 246777777777766552 1 345777777777764 6666
Q ss_pred EECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 690 TMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 690 ~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
|. .+++|+.|++++|. +..+|..+.++++|+.|++++|+
T Consensus 257 p~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred Cc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 65 46777777777775 55777777777777777777775
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=5.5e-20 Score=193.02 Aligned_cols=238 Identities=18% Similarity=0.180 Sum_probs=125.0
Q ss_pred EEEcCCCCCCCCCccccCcccccEEeccCCCCcccCcc-ccCCCCCcEEEccCCcCccc---chhhcccccCcEEEcCCC
Q 045237 458 VLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSS-LCNLLNLQTLDMPSSYIDHT---PEDIWNMHKLMHLNFGCI 533 (758)
Q Consensus 458 ~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~ 533 (758)
.++.+++.++.+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|.+..+ |..+..+++|++|+++++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 45555555555555432 3566666666666655544 35566666666666655443 444555566666665542
Q ss_pred --CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCccc
Q 045237 534 --TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQL 611 (758)
Q Consensus 534 --~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~ 611 (758)
..+|..+..+++|++|++.++..........+..+++|+.|++++| ......+..+..+++|+.|++++
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~------- 159 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAG------- 159 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS--CCEECSTTTTTTCTTCCEEECTT-------
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC--cCCccchhhcccCcCCCEEECCC-------
Confidence 2233345555566666555544332111134555566666666555 23333444455556666666655
Q ss_pred ccc----cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCc
Q 045237 612 SQM----IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWL 686 (758)
Q Consensus 612 ~~l----lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 686 (758)
+.+ +| .+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|...
T Consensus 160 n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 160 NSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG--GTTCTTCCEEECTTSCCC
T ss_pred CccccccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh--ccCcccCCEeECCCCCCc
Confidence 222 34 45555 66666666666655544555566666666666655554322211 345566666666665433
Q ss_pred CceEECccccc-ccceeeEecccc
Q 045237 687 EEWTMGARAMT-KLESLIINPCAY 709 (758)
Q Consensus 687 ~~l~~~~~~l~-~L~~L~l~~c~~ 709 (758)
...|..+..+| +|+.|++++|+.
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ccCHHHHHhhhccCCEEEccCCCe
Confidence 33344455553 566666666653
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.1e-19 Score=201.79 Aligned_cols=216 Identities=20% Similarity=0.166 Sum_probs=113.0
Q ss_pred CeeEEEEcCCCCCCCC-CccccCcccccEEeccCCCCcccC-ccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEc
Q 045237 454 KLLRVLNMGSLVLDQF-PSGIENLFLLRCLKLDVPSLKSLP-SSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNF 530 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 530 (758)
++|++|+|++|.++.+ |..++++++|++|+|++|.++.++ ..+.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4567777777776644 456677777777777777776544 4566777777777777777666654 566777777776
Q ss_pred CCC--CCCC-CCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC
Q 045237 531 GCI--TLPA-PPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK 607 (758)
Q Consensus 531 ~~~--~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 607 (758)
+++ ..+| ..+..+++|+.|++.+++......+..+..+++|+.|++++|. ...+| .+..+++|+.|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~---l~~~~-~~~~l~~L~~L~Ls~--- 227 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN---IKDMP-NLTPLVGLEELEMSG--- 227 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC---CSSCC-CCTTCTTCCEEECTT---
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc---ccccc-cccccccccEEECcC---
Confidence 652 1222 2345555566555555444331122234555555555555552 11122 234444455555544
Q ss_pred Ccccccc---cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccC
Q 045237 608 GWQLSQM---IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSM 683 (758)
Q Consensus 608 ~~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~ 683 (758)
+.+ .| .+..+ ++|+.|++++|.+....+..+..+++|+.|+|++|.+.+..+.. +..+++|+.|+|++|
T Consensus 228 ----N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 228 ----NHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL--FTPLRYLVELHLHHN 300 (452)
T ss_dssp ----SCCSEECGGGGTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS--STTCTTCCEEECCSS
T ss_pred ----CcCcccCcccccCc-cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH--hccccCCCEEEccCC
Confidence 222 23 44444 45555555555444444444444455555555544443222111 333444444444444
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=4e-20 Score=191.94 Aligned_cols=258 Identities=17% Similarity=0.137 Sum_probs=128.8
Q ss_pred EEEcCCCCCCCCCccccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCccc-chhhcccccCcEEEcCCCC-
Q 045237 458 VLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHT-PEDIWNMHKLMHLNFGCIT- 534 (758)
Q Consensus 458 ~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~- 534 (758)
+++.+++.++.+|..+ .++|++|++++|.++.+|. .+.++++|++|++++|.+..+ |..+.++++|++|+++++.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 3444444444444332 2345555555555544432 344455555555555544444 3344445555555544321
Q ss_pred --CC-CCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCccc
Q 045237 535 --LP-APPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQL 611 (758)
Q Consensus 535 --~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~ 611 (758)
.+ |..+..+++|++|++.++.... ..+..+..+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~------- 162 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHG------- 162 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-------
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCC-------
Confidence 11 2334444455555544444333 334445566666666666652 2222223355566666666665
Q ss_pred ccc--cC--CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcC
Q 045237 612 SQM--IL--SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLE 687 (758)
Q Consensus 612 ~~l--lp--~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 687 (758)
+.+ +| .+..+ ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|+...
T Consensus 163 n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 163 NRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp SCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSSCEEC
T ss_pred CcccccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEEeccCCCccC
Confidence 333 23 45556 77777777777766666667777777777777777666543322 4566777777777765221
Q ss_pred ceEECcccccccceeeEeccccCCCCchhhcC--CCCCcEEEEecC
Q 045237 688 EWTMGARAMTKLESLIINPCAYLKKLPEELWR--IESFRKLELHWP 731 (758)
Q Consensus 688 ~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~--l~sL~~L~l~~c 731 (758)
..+ ....+..|+.+....+...-..|..+.. +..+...++.+|
T Consensus 240 ~~~-~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 240 DCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp SGG-GHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CCC-cHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 111 0011223444444444433344544432 444454455555
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=7.4e-21 Score=200.66 Aligned_cols=249 Identities=15% Similarity=0.092 Sum_probs=178.4
Q ss_pred hhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhccc
Q 045237 444 LDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNM 522 (758)
Q Consensus 444 ~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l 522 (758)
..+...+..+++|+.|++++|.++.++ ..++.+++|++|++++|.++.+++ +..+++|++|++++|.+..+|. .
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~ 98 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----G 98 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----C
T ss_pred hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----C
Confidence 455667788889999999999998665 678999999999999999987765 8999999999999998887763 4
Q ss_pred ccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHh-hccCCCceEE
Q 045237 523 HKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSL-RELLKLESLK 601 (758)
Q Consensus 523 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l-~~~~~L~~L~ 601 (758)
++|++|+++++.........+++|++|++.++.... ..+..++.+++|+.|++++| ......+..+ ..+++|+.|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCC--CCCcccHHHHhhccCcCCEEE
Confidence 899999988732211112346778888877776654 44556777888888888887 3333334444 3567888888
Q ss_pred eeecCCCcccccc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEe
Q 045237 602 LVNKSKGWQLSQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILH 679 (758)
Q Consensus 602 L~~~~~~~~~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ 679 (758)
+++ +.+ +|....+ ++|+.|++++|.+.. +++.+..+++|+.|++++|.+.. .+.. +..+++|+.|+
T Consensus 176 L~~-------N~l~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~--~~~l~~L~~L~ 243 (317)
T 3o53_A 176 LQY-------NFIYDVKGQVVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKA--LRFSQNLEHFD 243 (317)
T ss_dssp CTT-------SCCCEEECCCCC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTT--CCCCTTCCEEE
T ss_pred CCC-------CcCccccccccc-ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhH--hhcCCCCCEEE
Confidence 877 444 3433335 788888888888754 44557778888888888777663 2221 45677888888
Q ss_pred eccCCCc-CceEECcccccccceeeEeccccCCC
Q 045237 680 LKSMFWL-EEWTMGARAMTKLESLIINPCAYLKK 712 (758)
Q Consensus 680 L~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~ 712 (758)
+++|+.. ..++..+..+++|+.|++.+|+.++.
T Consensus 244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred ccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 8887644 35556667778888888876665543
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=199.67 Aligned_cols=217 Identities=18% Similarity=0.183 Sum_probs=120.4
Q ss_pred CeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccC-ccccCCCCCcEEEccCCcCcccch-hhcccccCcEEEc
Q 045237 454 KLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLP-SSLCNLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHLNF 530 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l 530 (758)
+++++|+|++|.+..++ ..+.++++|++|+|++|.++.++ ..+.++++|++|+|++|.+..+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45677777777777543 56777777777777777777554 456777777777777777777765 3667777777777
Q ss_pred CCC--CCCC-CCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCC
Q 045237 531 GCI--TLPA-PPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSK 607 (758)
Q Consensus 531 ~~~--~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 607 (758)
+++ ..++ ..+..+++|+.|++.+++......+..+..+++|+.|++++|. ...+| .+..+++|+.|+|++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~---l~~~~-~~~~l~~L~~L~Ls~--- 216 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN---LREIP-NLTPLIKLDELDLSG--- 216 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC---CSSCC-CCTTCSSCCEEECTT---
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc---Ccccc-ccCCCcccCEEECCC---
Confidence 652 1222 2355566666666655444331222245556666666666552 22222 244445555555554
Q ss_pred Ccccccc---cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccC
Q 045237 608 GWQLSQM---IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSM 683 (758)
Q Consensus 608 ~~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~ 683 (758)
+.+ .| .+..+ ++|+.|+|++|.+....+..+..+++|+.|+|++|.+....+.. +..+++|+.|+|++|
T Consensus 217 ----N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 217 ----NHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL--FTPLHHLERIHLHHN 289 (440)
T ss_dssp ----SCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT--TSSCTTCCEEECCSS
T ss_pred ----CccCccChhhhccC-ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH--hccccCCCEEEcCCC
Confidence 222 23 44444 55555555555554444445555555555555555444322111 334455555555544
Q ss_pred C
Q 045237 684 F 684 (758)
Q Consensus 684 ~ 684 (758)
+
T Consensus 290 p 290 (440)
T 3zyj_A 290 P 290 (440)
T ss_dssp C
T ss_pred C
Confidence 3
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=8.3e-19 Score=200.05 Aligned_cols=261 Identities=15% Similarity=0.017 Sum_probs=200.6
Q ss_pred eeEEEeeCCCCccccccccccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEecc
Q 045237 406 IKRFAVPKNLTKFVSLEHIDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLD 485 (758)
Q Consensus 406 ~r~Ls~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~ 485 (758)
++.+.+. +......+..+.++++.|.+.++.... ++. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 42 l~~L~ls-~n~L~~lp~~l~~~L~~L~L~~N~l~~----lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVG-ESGLTTLPDCLPAHITTLVIPDNNLTS----LPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCEEECC-SSCCSCCCSCCCTTCSEEEECSCCCSC----CCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CcEEEec-CCCcCccChhhCCCCcEEEecCCCCCC----CCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 4556665 333223444444889999999887753 222 57899999999999999987 67899999999
Q ss_pred CCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCC--CCCCCCCCccccCcccccccccCCCCCCcc
Q 045237 486 VPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCI--TLPAPPENYCSSLKNLIFISALHPCSCTPD 563 (758)
Q Consensus 486 ~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 563 (758)
+|.++.+|. .+.+|++|++++|.+..+|.. +++|++|+++++ ..+|. .+.+|+.|++.++.... +|
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~--l~- 177 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS--LP- 177 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CC-
T ss_pred CCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC--Cc-
Confidence 999999987 679999999999999999975 489999999873 23333 35678888887776543 44
Q ss_pred ccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cCCcCCCCCCccEEEEeeccCCCCCcc
Q 045237 564 TLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--ILSEYQFPPSLTQLSLSNTELKEDPMP 641 (758)
Q Consensus 564 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~ 641 (758)
..+++|+.|++++|. ...+|. ..++|+.|++++ +.+ +| ..+++|+.|++++|.+.. +|
T Consensus 178 --~~~~~L~~L~Ls~N~---l~~l~~---~~~~L~~L~L~~-------N~l~~l~---~~~~~L~~L~Ls~N~L~~-lp- 237 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQ---LASLPT---LPSELYKLWAYN-------NRLTSLP---ALPSGLKELIVSGNRLTS-LP- 237 (622)
T ss_dssp --CCCTTCCEEECCSSC---CSCCCC---CCTTCCEEECCS-------SCCSSCC---CCCTTCCEEECCSSCCSC-CC-
T ss_pred --ccCCCCcEEECCCCC---CCCCCC---ccchhhEEECcC-------CcccccC---CCCCCCCEEEccCCccCc-CC-
Confidence 567899999999983 333443 347899999998 444 34 223899999999999865 44
Q ss_pred cccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcC
Q 045237 642 TLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWR 719 (758)
Q Consensus 642 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~ 719 (758)
..+++|+.|+|++|.+.. .+ ..+++|+.|+|++|. +..+|..+..+++|+.|++++|+.....|..+..
T Consensus 238 --~~l~~L~~L~Ls~N~L~~-lp-----~~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLTS-LP-----MLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp --CCCTTCCEEECCSSCCSC-CC-----CCCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred --CCCCcCcEEECCCCCCCc-CC-----cccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 567899999999998874 22 257899999999985 7799988999999999999999966555554443
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=1.3e-20 Score=198.18 Aligned_cols=224 Identities=20% Similarity=0.184 Sum_probs=111.5
Q ss_pred eEEEEcCCCCCC--CCCcccc-------CcccccEEeccCCCCc-ccCccc--cCCCCCcEEEccCCcCcccchhhcccc
Q 045237 456 LRVLNMGSLVLD--QFPSGIE-------NLFLLRCLKLDVPSLK-SLPSSL--CNLLNLQTLDMPSSYIDHTPEDIWNMH 523 (758)
Q Consensus 456 Lr~L~L~~~~l~--~lp~~i~-------~l~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~l~~lp~~i~~l~ 523 (758)
|+.|+++++.+. .+|..+. ++++|++|++++|.++ .+|..+ ..+++|++|++++|.+..+|..+..+.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 455555555543 3444333 4555555555555555 455444 555555555555555555554444440
Q ss_pred cCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhh--HHHHh--hccCCCce
Q 045237 524 KLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSG--LSKSL--RELLKLES 599 (758)
Q Consensus 524 ~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--l~~~l--~~~~~L~~ 599 (758)
. ..+++|++|++.++.... ..+..++.+++|+.|++++|. ..+. ++..+ ..+
T Consensus 145 ~----------------~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~l----- 200 (312)
T 1wwl_A 145 Q----------------WLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNP--ELGERGLISALCPLKF----- 200 (312)
T ss_dssp T----------------TCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCT--TCHHHHHHHHSCTTSC-----
T ss_pred H----------------hhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCC--cCcchHHHHHHHhccC-----
Confidence 0 001334444433333322 334566677777777777762 2222 23333 334
Q ss_pred EEeeecCCCcccccccCCcCCCCCCccEEEEeeccCCC--CCc-ccccCCCCCceEEEeccccCCceeEEeCCCCCcccc
Q 045237 600 LKLVNKSKGWQLSQMILSEYQFPPSLTQLSLSNTELKE--DPM-PTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLK 676 (758)
Q Consensus 600 L~L~~~~~~~~~~~llp~~~~l~~~L~~L~L~~~~l~~--~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~ 676 (758)
++|+.|++++|.+.. ..+ ..+..+++|++|++++|.+.+..+... ...+++|+
T Consensus 201 -----------------------~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~ 256 (312)
T 1wwl_A 201 -----------------------PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-CDWPSQLN 256 (312)
T ss_dssp -----------------------TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-CCCCTTCC
T ss_pred -----------------------CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-hhhcCCCC
Confidence 444445554444431 111 122345556666665555554332111 33455666
Q ss_pred EEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 677 ILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 677 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
.|++++|. ++.+|..+. ++|++|++++|. ++.+|. +..+++|++|++++++
T Consensus 257 ~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 257 SLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEECTTSC-CSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred EEECCCCc-cChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 66666654 445554443 566666666665 444454 5666666666666665
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1.1e-18 Score=193.64 Aligned_cols=240 Identities=18% Similarity=0.190 Sum_probs=151.5
Q ss_pred eeEEEEcCCCCCCCCCccccCcccccEEeccCCCCccc-CccccCCCCCcEEEccCCcCcccc-hhhcccccCcEEEcCC
Q 045237 455 LLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSL-PSSLCNLLNLQTLDMPSSYIDHTP-EDIWNMHKLMHLNFGC 532 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~ 532 (758)
..+.++.++..++.+|..+. ++|++|+|++|.++.+ |..+.++++|++|+|++|.+..++ ..+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 35678888888999997665 5899999999999966 567899999999999999988875 5688899999998876
Q ss_pred C--CCCCCC-CCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCc
Q 045237 533 I--TLPAPP-ENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGW 609 (758)
Q Consensus 533 ~--~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 609 (758)
+ ..+|.. +..+++|++|++.++.... ..+..+..+++|+.|+++++ .....++..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~------------------- 190 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGEL--KKLEYISEG------------------- 190 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCC--TTCCEECTT-------------------
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCC--CCccccChh-------------------
Confidence 3 233332 5556666666655554432 22334555556666655554 122211110
Q ss_pred ccccccCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCce
Q 045237 610 QLSQMILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEW 689 (758)
Q Consensus 610 ~~~~llp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 689 (758)
.+..+ ++|+.|+|++|.+.. + +.+..+++|+.|+|++|.+.+..+.. +..+++|+.|+|++|. +..+
T Consensus 191 -------~~~~l-~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~ 257 (452)
T 3zyi_A 191 -------AFEGL-FNLKYLNLGMCNIKD-M-PNLTPLVGLEELEMSGNHFPEIRPGS--FHGLSSLKKLWVMNSQ-VSLI 257 (452)
T ss_dssp -------TTTTC-TTCCEEECTTSCCSS-C-CCCTTCTTCCEEECTTSCCSEECGGG--GTTCTTCCEEECTTSC-CCEE
T ss_pred -------hccCC-CCCCEEECCCCcccc-c-ccccccccccEEECcCCcCcccCccc--ccCccCCCEEEeCCCc-CceE
Confidence 34444 666666666666543 2 34566666666666666655433322 4556666666666664 3333
Q ss_pred -EECcccccccceeeEeccccCCCCc-hhhcCCCCCcEEEEecCc
Q 045237 690 -TMGARAMTKLESLIINPCAYLKKLP-EELWRIESFRKLELHWPQ 732 (758)
Q Consensus 690 -~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~sL~~L~l~~c~ 732 (758)
+..+..+++|+.|++++|. +..+| ..+..+++|+.|++++||
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 3345666777777777665 33444 345566777777776655
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=191.36 Aligned_cols=224 Identities=20% Similarity=0.231 Sum_probs=188.8
Q ss_pred ccccccccccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccCc-cc
Q 045237 419 VSLEHIDTYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLPS-SL 496 (758)
Q Consensus 419 ~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i 496 (758)
..+..+.++++.|.+.++... .+....|.++++|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|. .+
T Consensus 57 ~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 57 EVPDGISTNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp SCCSCCCTTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred cCCCCCCCCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 345555588999999988876 445578899999999999999998665 779999999999999999998886 58
Q ss_pred cCCCCCcEEEccCCcCcccch-hhcccccCcEEEcCCC---CCCC-CCCCccccCcccccccccCCCCCCccccCCCCCC
Q 045237 497 CNLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHLNFGCI---TLPA-PPENYCSSLKNLIFISALHPCSCTPDTLGRLPNV 571 (758)
Q Consensus 497 ~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~---~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 571 (758)
.++++|++|+|++|.+..+|. .+.++++|++|+++++ ..++ ..+..+++|+.|++.++.... + ..+..+++|
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~-~~~~~l~~L 209 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--I-PNLTPLIKL 209 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--C-CCCTTCSSC
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--c-cccCCCccc
Confidence 999999999999999999876 5889999999999862 2233 357889999999998887643 3 358899999
Q ss_pred CeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc---cC-CcCCCCCCccEEEEeeccCCCCCcccccCCC
Q 045237 572 QTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM---IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLP 647 (758)
Q Consensus 572 ~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~ 647 (758)
+.|++++| ......+..+..+++|+.|++++ +.+ .| .+..+ ++|+.|+|++|.+....+..+..++
T Consensus 210 ~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 210 DELDLSGN--HLSAIRPGSFQGLMHLQKLWMIQ-------SQIQVIERNAFDNL-QSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp CEEECTTS--CCCEECTTTTTTCTTCCEEECTT-------CCCCEECTTSSTTC-TTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred CEEECCCC--ccCccChhhhccCccCCEEECCC-------CceeEEChhhhcCC-CCCCEEECCCCCCCccChhHhcccc
Confidence 99999999 45555578899999999999998 545 45 77888 9999999999999887778889999
Q ss_pred CCceEEEecccc
Q 045237 648 HLLVLKLKQNSY 659 (758)
Q Consensus 648 ~L~~L~L~~n~~ 659 (758)
+|+.|+|++|.+
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 999999998864
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=6.5e-20 Score=204.88 Aligned_cols=235 Identities=16% Similarity=0.099 Sum_probs=173.0
Q ss_pred ccCCeeEEEEcCCCCCCCC-CccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEE
Q 045237 451 KKFKLLRVLNMGSLVLDQF-PSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLN 529 (758)
Q Consensus 451 ~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 529 (758)
..+++|+.|+|++|.++.+ |..++.+++|++|+|++|.++.+++ ++.+++|++|+|++|.+..+|. .++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 3445899999999999866 4689999999999999999987665 8999999999999999888774 38899999
Q ss_pred cCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhh-ccCCCceEEeeecCCC
Q 045237 530 FGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLR-ELLKLESLKLVNKSKG 608 (758)
Q Consensus 530 l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~~~~L~~L~L~~~~~~ 608 (758)
++++.........+++|+.|++.++.... ..+..++.+++|+.|++++| ...+..|..+. .+++|+.|+|++
T Consensus 106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~~l~~L~~L~Ls~---- 178 (487)
T 3oja_A 106 AANNNISRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQY---- 178 (487)
T ss_dssp CCSSCCCCEEECCCSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTT----
T ss_pred CcCCcCCCCCccccCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCC--CCCCcChHHHhhhCCcccEEecCC----
Confidence 88742222222346778888877776655 55667778888888888887 34444555554 678888888887
Q ss_pred cccccc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCc
Q 045237 609 WQLSQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWL 686 (758)
Q Consensus 609 ~~~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 686 (758)
+.+ +|....+ ++|+.|+|++|.+.+ +|+.+..+++|+.|+|++|.+.+ .+.. +..+++|+.|++++|+..
T Consensus 179 ---N~l~~~~~~~~l-~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 179 ---NFIYDVKGQVVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKA--LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ---SCCCEEECCCCC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTT--CCCCTTCCEEECTTCCBC
T ss_pred ---CccccccccccC-CCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchh--hccCCCCCEEEcCCCCCc
Confidence 444 3433345 888888888888764 44557788888888888887764 2222 456788888888887744
Q ss_pred -CceEECcccccccceeeEe
Q 045237 687 -EEWTMGARAMTKLESLIIN 705 (758)
Q Consensus 687 -~~l~~~~~~l~~L~~L~l~ 705 (758)
..+|..+..++.|+.|.+.
T Consensus 251 c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred CcchHHHHHhCCCCcEEecc
Confidence 2555566777777777775
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=4.1e-19 Score=184.31 Aligned_cols=241 Identities=17% Similarity=0.150 Sum_probs=161.2
Q ss_pred CCeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCccc-CccccCCCCCcEEEccCCc-Cccc-chhhcccccCcEE
Q 045237 453 FKLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSL-PSSLCNLLNLQTLDMPSSY-IDHT-PEDIWNMHKLMHL 528 (758)
Q Consensus 453 l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~-l~~l-p~~i~~l~~L~~L 528 (758)
.+.|+.|+++++.++.+| ..+..+++|++|++++|.++.+ |..+.++++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 346777777777777554 4567777777777777777755 5567777777777777774 6666 5557777777777
Q ss_pred EcCCC--CCC-CCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeec
Q 045237 529 NFGCI--TLP-APPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNK 605 (758)
Q Consensus 529 ~l~~~--~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 605 (758)
+++++ ... |..+..+++|++|++.++.... ..+..++.+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~- 186 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNR--ISSVPERAFRGLHSLDRLLLHQ- 186 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCS-
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCCc--ccccCHHHhcCccccCEEECCC-
Confidence 77652 122 4446677777777777665544 344457888899999998882 3332334577888999999988
Q ss_pred CCCcccccc---cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeec
Q 045237 606 SKGWQLSQM---IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLK 681 (758)
Q Consensus 606 ~~~~~~~~l---lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~ 681 (758)
+.+ .| ++..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+....... .....|+.+...
T Consensus 187 ------n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~---~~~~~l~~~~~~ 256 (285)
T 1ozn_A 187 ------NRVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR---PLWAWLQKFRGS 256 (285)
T ss_dssp ------SCCCEECTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH---HHHHHHHHCCSE
T ss_pred ------CcccccCHhHccCc-ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH---HHHHHHHhcccc
Confidence 444 56 78888 99999999999998776677999999999999999875432110 011234444444
Q ss_pred cCCCcCceEECcc--cccccceeeEecc
Q 045237 682 SMFWLEEWTMGAR--AMTKLESLIINPC 707 (758)
Q Consensus 682 ~~~~l~~l~~~~~--~l~~L~~L~l~~c 707 (758)
.+......|..+. .+..++..++.+|
T Consensus 257 ~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 257 SSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp ECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cCccccCCchHhCCcChhhcCHHHhccC
Confidence 4332224443332 3455666666666
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=6.2e-19 Score=194.98 Aligned_cols=258 Identities=17% Similarity=0.099 Sum_probs=156.3
Q ss_pred ceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCe-------------eEEEEcCCCCCCCC
Q 045237 405 TIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKL-------------LRVLNMGSLVLDQF 469 (758)
Q Consensus 405 ~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~-------------Lr~L~L~~~~l~~l 469 (758)
.++.+.+..+.. ...+..+. ++|+.|.+.++... ...+..+.++++ ++.|++++|.++.+
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~----~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWE----RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHH----HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCccc----ccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 344455542322 23444444 56666666554432 122333444443 37777777777766
Q ss_pred CccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCC--CCCCCCCCCccccCc
Q 045237 470 PSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGC--ITLPAPPENYCSSLK 547 (758)
Q Consensus 470 p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~--~~~~~~~~~~l~~L~ 547 (758)
|.. .++|++|++++|.++.+|.. +.+|++|++++|.+..+|.. .++|++|++++ ...+| .++.+++|+
T Consensus 87 p~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~ 156 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLK 156 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCC
T ss_pred CCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCC
Confidence 652 25677777777777777643 36777777777777666542 25778887766 33455 577788888
Q ss_pred ccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cCCcCCCCCCc
Q 045237 548 NLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--ILSEYQFPPSL 625 (758)
Q Consensus 548 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp~~~~l~~~L 625 (758)
+|++.++.... +|.. ..+|+.|++++|. ...+| .+..+++|+.|++++ +.+ +| ..+++|
T Consensus 157 ~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~---l~~l~-~~~~l~~L~~L~l~~-------N~l~~l~---~~~~~L 217 (454)
T 1jl5_A 157 IIDVDNNSLKK--LPDL---PPSLEFIAAGNNQ---LEELP-ELQNLPFLTAIYADN-------NSLKKLP---DLPLSL 217 (454)
T ss_dssp EEECCSSCCSC--CCCC---CTTCCEEECCSSC---CSSCC-CCTTCTTCCEEECCS-------SCCSSCC---CCCTTC
T ss_pred EEECCCCcCcc--cCCC---cccccEEECcCCc---CCcCc-cccCCCCCCEEECCC-------CcCCcCC---CCcCcc
Confidence 88877665432 3432 3478888888773 22344 577788888888877 333 33 223688
Q ss_pred cEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEe
Q 045237 626 TQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIIN 705 (758)
Q Consensus 626 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~ 705 (758)
+.|++++|.+. .+| .++.+++|++|++++|.+.+. + ..+++|+.|++++|. +..+|.. +++|+.|+++
T Consensus 218 ~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~-----~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 218 ESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-P-----DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVS 285 (454)
T ss_dssp CEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-C-----SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECC
T ss_pred cEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-c-----ccccccCEEECCCCc-ccccCcc---cCcCCEEECc
Confidence 89999998876 455 488899999999998887652 1 235788999998875 6666543 4778888888
Q ss_pred ccc
Q 045237 706 PCA 708 (758)
Q Consensus 706 ~c~ 708 (758)
+|.
T Consensus 286 ~N~ 288 (454)
T 1jl5_A 286 ENI 288 (454)
T ss_dssp SSC
T ss_pred CCc
Confidence 886
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=3.5e-19 Score=187.80 Aligned_cols=256 Identities=12% Similarity=0.058 Sum_probs=162.9
Q ss_pred CeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccC-ccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcC
Q 045237 454 KLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLP-SSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFG 531 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 531 (758)
..++.++++.+.+...+ ..+..+++|++|++++|.++.++ ..+.++++|++|++++|.+..++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 45777888888776444 33456789999999999999776 578999999999999999987765 8899999999998
Q ss_pred CCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCccc
Q 045237 532 CITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQL 611 (758)
Q Consensus 532 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~ 611 (758)
++.. ..+..+++|++|++.++.... .+ ...+++|+.|++++| ......+..+..+++|+.|++++
T Consensus 89 ~n~l--~~l~~~~~L~~L~l~~n~l~~--~~--~~~~~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~Ls~------- 153 (317)
T 3o53_A 89 NNYV--QELLVGPSIETLHAANNNISR--VS--CSRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKL------- 153 (317)
T ss_dssp SSEE--EEEEECTTCCEEECCSSCCSE--EE--ECCCSSCEEEECCSS--CCCSGGGBCTGGGSSEEEEECTT-------
T ss_pred CCcc--ccccCCCCcCEEECCCCccCC--cC--ccccCCCCEEECCCC--CCCCccchhhhccCCCCEEECCC-------
Confidence 7311 112234677777776665433 22 123567777777776 23333334555666666666666
Q ss_pred ccc---cC-Cc-CCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCc
Q 045237 612 SQM---IL-SE-YQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWL 686 (758)
Q Consensus 612 ~~l---lp-~~-~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 686 (758)
+.+ .| .+ ..+ ++|+.|++++|.+... +....+++|++|++++|.+.+..+. +..+++|+.|++++|. +
T Consensus 154 N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~l~~L~~L~L~~N~-l 226 (317)
T 3o53_A 154 NEIDTVNFAELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNK-L 226 (317)
T ss_dssp SCCCEEEGGGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSC-C
T ss_pred CCCCcccHHHHhhcc-CcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchhh---hcccCcccEEECcCCc-c
Confidence 333 22 23 244 6666666666665432 2233466666666666665532111 3455666666666663 5
Q ss_pred CceEECcccccccceeeEeccccC-CCCchhhcCCCCCcEEEEecCc
Q 045237 687 EEWTMGARAMTKLESLIINPCAYL-KKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 687 ~~l~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
+.+|..+..+++|+.|++++|+.. ..+|..+..+++|+.|++.+|+
T Consensus 227 ~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 556655666666666666666644 3455556666666666665443
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=1.3e-20 Score=209.84 Aligned_cols=304 Identities=18% Similarity=0.091 Sum_probs=142.3
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCC-CCccc-cCcc----cccEEeccCCCCc-----ccCc
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQ-FPSGI-ENLF----LLRCLKLDVPSLK-----SLPS 494 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i-~~l~----~Lr~L~L~~~~i~-----~lp~ 494 (758)
+++++|.+.++.........++..+..+++|++|++++|.+.. .+..+ ..+. +|++|++++|.++ .+|.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 5566666665554322112334455556666666666665542 11111 1232 4666666666655 3455
Q ss_pred cccCCCCCcEEEccCCcCccc-chhhc-----ccccCcEEEcCCCCC-------CCCCCCccccCcccccccccCCCCCC
Q 045237 495 SLCNLLNLQTLDMPSSYIDHT-PEDIW-----NMHKLMHLNFGCITL-------PAPPENYCSSLKNLIFISALHPCSCT 561 (758)
Q Consensus 495 ~i~~L~~L~~L~L~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~~ 561 (758)
.+.++++|++|++++|.+... +..+. ..++|++|+++++.. ++..+..+++|++|++.++.... ..
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~ 186 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE-AG 186 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH-HH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch-HH
Confidence 556666666666666655322 11111 133456665554211 11222334555555555443221 11
Q ss_pred ccccC-----CCCCCCeEEEEecC--chhhhhHHHHhhccCCCceEEeeecCC-Cccc---------------------c
Q 045237 562 PDTLG-----RLPNVQTLKIYGDL--SSYQSGLSKSLRELLKLESLKLVNKSK-GWQL---------------------S 612 (758)
Q Consensus 562 ~~~l~-----~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~L~~~~~-~~~~---------------------~ 612 (758)
+..+. .+++|+.|++++|. ......++..+..+++|+.|+++++.- +..+ +
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 11121 23455555555552 011112444455555555555555210 0000 1
Q ss_pred cc-------cC-CcCCCCCCccEEEEeeccCCCCCccccc-----CCCCCceEEEeccccCCceeEE--eCCCCCccccE
Q 045237 613 QM-------IL-SEYQFPPSLTQLSLSNTELKEDPMPTLE-----KLPHLLVLKLKQNSYSGRKLAC--VGSGGFPKLKI 677 (758)
Q Consensus 613 ~l-------lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~-----~l~~L~~L~L~~n~~~~~~~~~--~~~~~~~~L~~ 677 (758)
.+ +| .+..+ ++|+.|++++|.+....+..+. ..++|++|++++|.+.+..... ..+..+++|+.
T Consensus 267 ~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 11 12 22233 4455555555443222111111 1235555555555443321000 00223467777
Q ss_pred EeeccCCCcCce-EECcc-----cccccceeeEeccccCC----CCchhhcCCCCCcEEEEecCc
Q 045237 678 LHLKSMFWLEEW-TMGAR-----AMTKLESLIINPCAYLK----KLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 678 L~L~~~~~l~~l-~~~~~-----~l~~L~~L~l~~c~~l~----~lp~~l~~l~sL~~L~l~~c~ 732 (758)
|++++|. +... +..+. .+++|++|++++|.... .+|..+..+++|++|++++|+
T Consensus 346 L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 346 LQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp EECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred EEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 7777763 3321 11111 15688888888887432 677788888999999999887
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.2e-18 Score=194.47 Aligned_cols=231 Identities=12% Similarity=0.067 Sum_probs=137.7
Q ss_pred CcccccEEeccCCCCcccC-ccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCCCCCCCCCccccCccccccc
Q 045237 475 NLFLLRCLKLDVPSLKSLP-SSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFIS 553 (758)
Q Consensus 475 ~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~ 553 (758)
.+++|++|+|++|.++.+| ..++++++|++|+|++|.+..++. +..+++|++|+++++.. ..+...++|+.|++.+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l--~~l~~~~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV--QELLVGPSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE--EEEEECTTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC--CCCCCCCCcCEEECcC
Confidence 3458999999999999765 689999999999999999987765 88999999999987311 1122236677777666
Q ss_pred ccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc---cC-CcC-CCCCCccEE
Q 045237 554 ALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM---IL-SEY-QFPPSLTQL 628 (758)
Q Consensus 554 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l---lp-~~~-~l~~~L~~L 628 (758)
+.... ..+ ..+++|+.|++++| ...+..|..+..+++|+.|++++ +.+ .| .+. .+ ++|+.|
T Consensus 109 N~l~~-~~~---~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~-------N~l~~~~~~~l~~~l-~~L~~L 174 (487)
T 3oja_A 109 NNISR-VSC---SRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKL-------NEIDTVNFAELAASS-DTLEHL 174 (487)
T ss_dssp SCCCC-EEE---CCCSSCEEEECCSS--CCCSGGGBCGGGGSSEEEEECTT-------SCCCEEEGGGGGGGT-TTCCEE
T ss_pred CcCCC-CCc---cccCCCCEEECCCC--CCCCCCchhhcCCCCCCEEECCC-------CCCCCcChHHHhhhC-CcccEE
Confidence 65533 111 23566777777766 33333344555566666666655 333 23 333 34 556666
Q ss_pred EEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccc
Q 045237 629 SLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCA 708 (758)
Q Consensus 629 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 708 (758)
+|++|.+.+. +....+++|+.|+|++|.+.+..+. +..+++|+.|+|++|. +..+|..++.+++|+.|++.+|+
T Consensus 175 ~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 175 NLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred ecCCCccccc--cccccCCCCCEEECCCCCCCCCCHh---HcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 6666655432 2233455666666665555442211 3345556666665553 44555555555566666666555
Q ss_pred cC-CCCchhhcCCCCCcEEEE
Q 045237 709 YL-KKLPEELWRIESFRKLEL 728 (758)
Q Consensus 709 ~l-~~lp~~l~~l~sL~~L~l 728 (758)
.. ..+|..+..+++|+.+.+
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEec
Confidence 33 244444555555554444
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1.9e-20 Score=208.57 Aligned_cols=297 Identities=16% Similarity=0.089 Sum_probs=183.1
Q ss_pred ccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCC-CCccc-----cCcccccEEeccCCCCcc-----cCcc
Q 045237 427 YLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQ-FPSGI-----ENLFLLRCLKLDVPSLKS-----LPSS 495 (758)
Q Consensus 427 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i-----~~l~~Lr~L~L~~~~i~~-----lp~~ 495 (758)
++++|.+.++.........++..+..+++|+.|++++|.++. -+..+ ..+++|++|++++|.++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 466666666655432222345566666677777777666541 11111 123457777777766652 3555
Q ss_pred ccCCCCCcEEEccCCcCccc-chhhc-----ccccCcEEEcCCCCC-------CCCCCCccccCcccccccccCCCCCC-
Q 045237 496 LCNLLNLQTLDMPSSYIDHT-PEDIW-----NMHKLMHLNFGCITL-------PAPPENYCSSLKNLIFISALHPCSCT- 561 (758)
Q Consensus 496 i~~L~~L~~L~L~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~~- 561 (758)
+..+++|++|++++|.+... +..+. .+++|++|+++++.. ++..+..+++|++|++.++.... ..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD-VGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH-HHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh-HHH
Confidence 56667777777777765432 11222 245777777766311 12234456778888777664322 11
Q ss_pred ----ccccCCCCCCCeEEEEecC--chhhhhHHHHhhccCCCceEEeeecCCCcccccc-------cC-CcCCCCCCccE
Q 045237 562 ----PDTLGRLPNVQTLKIYGDL--SSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM-------IL-SEYQFPPSLTQ 627 (758)
Q Consensus 562 ----~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l-------lp-~~~~l~~~L~~ 627 (758)
+.....+++|+.|++++|. ......++..+..+++|+.|++++ +.+ ++ .+...+++|+.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-------n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-------NELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-------CCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC-------CCCchHHHHHHHHHhccCCcccee
Confidence 1122357888888888874 111223677788888999999988 433 22 22222269999
Q ss_pred EEEeeccCCCC----CcccccCCCCCceEEEeccccCCceeEEe--C-CCCCccccEEeeccCCCcC-----ceEECccc
Q 045237 628 LSLSNTELKED----PMPTLEKLPHLLVLKLKQNSYSGRKLACV--G-SGGFPKLKILHLKSMFWLE-----EWTMGARA 695 (758)
Q Consensus 628 L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~-~~~~~~L~~L~L~~~~~l~-----~l~~~~~~ 695 (758)
|++++|.+... ++..+..+++|++|++++|.+.+..+... . ....++|+.|++++|. ++ .+|..+..
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLA 396 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHH
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHh
Confidence 99999998654 45567788999999999998765432211 0 1126799999999996 55 67777788
Q ss_pred ccccceeeEeccccCCC----Cchhhc-CCCCCcEEEEecCc
Q 045237 696 MTKLESLIINPCAYLKK----LPEELW-RIESFRKLELHWPQ 732 (758)
Q Consensus 696 l~~L~~L~l~~c~~l~~----lp~~l~-~l~sL~~L~l~~c~ 732 (758)
+++|++|++++|+.-.. +...+. ..++|+.|.+.++.
T Consensus 397 ~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 99999999999984321 111222 24568888887654
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=8.1e-19 Score=201.88 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=51.7
Q ss_pred ccCCCCCceEEEeccc--cCCceeEEeCCCCCccccEEeeccCCCcC--ceEECcccccccceeeEeccccCC-CCchhh
Q 045237 643 LEKLPHLLVLKLKQNS--YSGRKLACVGSGGFPKLKILHLKSMFWLE--EWTMGARAMTKLESLIINPCAYLK-KLPEEL 717 (758)
Q Consensus 643 l~~l~~L~~L~L~~n~--~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~-~lp~~l 717 (758)
+..+++|+.|+++.|. +.+..+... ...+++|+.|+|++|. ++ .++.....+++|++|+|++|+... .++..+
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 3445666666665322 222222211 2236677777777765 33 233344667888888888888321 244555
Q ss_pred cCCCCCcEEEEecCc
Q 045237 718 WRIESFRKLELHWPQ 732 (758)
Q Consensus 718 ~~l~sL~~L~l~~c~ 732 (758)
..+++|++|++++|+
T Consensus 510 ~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHCSSCCEEEEESCB
T ss_pred HhcCccCeeECcCCc
Confidence 678888888888887
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=3.7e-17 Score=168.67 Aligned_cols=197 Identities=21% Similarity=0.220 Sum_probs=133.6
Q ss_pred CeeEEEEcCCCCCCCCCc-cccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCcccc-hhhcccccCcEEEc
Q 045237 454 KLLRVLNMGSLVLDQFPS-GIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHTP-EDIWNMHKLMHLNF 530 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l 530 (758)
+.|++|++++|.++.++. .++++++|++|++++|.++.+|. .+.++++|++|++++|.+..++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 357788888888776654 67778888888888888776654 5777888888888888777765 45777888888887
Q ss_pred CCC--CCCC-CCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCc----eEEee
Q 045237 531 GCI--TLPA-PPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLE----SLKLV 603 (758)
Q Consensus 531 ~~~--~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~----~L~L~ 603 (758)
+++ ..++ ..++.+++|++|++.++......+|..++.+++|+.|++++|. .....+..+..+.+|+ .|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeecC
Confidence 652 2222 2467777777777777665442357778888888888888873 3332334444444554 66776
Q ss_pred ecCCCcccccc--cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccC
Q 045237 604 NKSKGWQLSQM--IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYS 660 (758)
Q Consensus 604 ~~~~~~~~~~l--lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~ 660 (758)
+ +.+ +| ..... .+|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 186 ~-------n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 186 L-------NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp S-------SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred C-------CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 6 444 33 44444 57888888888776555555677777888877777654
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=4.2e-18 Score=179.10 Aligned_cols=227 Identities=17% Similarity=0.122 Sum_probs=148.0
Q ss_pred ccccceEEeccccCCcchhhhhHH------HhccCCeeEEEEcCCCCCC-CCCccc--cCcccccEEeccCCCCcccCcc
Q 045237 425 DTYLHSLQNFALESDHSALLDCEN------ICKKFKLLRVLNMGSLVLD-QFPSGI--ENLFLLRCLKLDVPSLKSLPSS 495 (758)
Q Consensus 425 ~~~Lr~L~~~~~~~~~~~~~~~~~------~~~~l~~Lr~L~L~~~~l~-~lp~~i--~~l~~Lr~L~L~~~~i~~lp~~ 495 (758)
...++.|.+.++..... .++.. .+.++++|++|++++|.++ .+|..+ +.+++|++|++++|.++.+|..
T Consensus 62 ~~~L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 139 (312)
T 1wwl_A 62 TDIIKSLSLKRLTVRAA--RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW 139 (312)
T ss_dssp HHHHHHCCCCEEEEEEE--ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH
T ss_pred HHHHhhcccccccccCC--CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH
Confidence 34477776666555321 11111 1237899999999999998 788876 8999999999999999988988
Q ss_pred ccCC-----CCCcEEEccCCcCcccc-hhhcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCcccc--CC
Q 045237 496 LCNL-----LNLQTLDMPSSYIDHTP-EDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTL--GR 567 (758)
Q Consensus 496 i~~L-----~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l--~~ 567 (758)
++.+ ++|++|++++|.+..+| ..+.++++|++|+++++.... .. ..+..+ +.
T Consensus 140 ~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------~~----------~~~~~~~~~~ 199 (312)
T 1wwl_A 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG----------ER----------GLISALCPLK 199 (312)
T ss_dssp HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH----------HH----------HHHHHSCTTS
T ss_pred HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc----------ch----------HHHHHHHhcc
Confidence 8877 99999999999998886 668888888888887641100 00 123333 67
Q ss_pred CCCCCeEEEEecCchhhhhHHHH-hhccCCCceEEeeecCCCcccccccCCcCCCCCCccEEEEeeccCCCCCc-ccccC
Q 045237 568 LPNVQTLKIYGDLSSYQSGLSKS-LRELLKLESLKLVNKSKGWQLSQMILSEYQFPPSLTQLSLSNTELKEDPM-PTLEK 645 (758)
Q Consensus 568 l~~L~~L~l~~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~~~~~~llp~~~~l~~~L~~L~L~~~~l~~~~~-~~l~~ 645 (758)
+++|+.|++++|.-.....++.. +..+ ++|+.|++++|.+.+..| +.+..
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l----------------------------~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAAR----------------------------VQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTT----------------------------CCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcC----------------------------CCCCEEECCCCcCCcccchhhhhh
Confidence 88999999998831111233322 2334 455555555555544332 34445
Q ss_pred CCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccc
Q 045237 646 LPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCA 708 (758)
Q Consensus 646 l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 708 (758)
+++|++|++++|.+. ..+.. . +++|+.|++++|. ++.+|. +..+++|++|++++|+
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~--~--~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKG--L--PAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSS--C--CSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred cCCCCEEECCCCccC-hhhhh--c--cCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 666666666666655 22221 1 1567777777664 555554 6667777777777776
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=3.8e-17 Score=171.31 Aligned_cols=189 Identities=21% Similarity=0.270 Sum_probs=103.5
Q ss_pred cCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcC
Q 045237 452 KFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFG 531 (758)
Q Consensus 452 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 531 (758)
.+++|+.|+++++.++.+| .+..+++|++|++++|.++.+|. +.++++|++|++++|.+..+| .+..+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 4556666677776666665 46666677777777776666665 666777777777777666654 46666666666665
Q ss_pred CC--CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCc
Q 045237 532 CI--TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGW 609 (758)
Q Consensus 532 ~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 609 (758)
++ ..++ .+..+++|+.|++.++.... .+ .++.+++|+.|++++|. ...++. +..+++|+.|++++
T Consensus 116 ~n~l~~~~-~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~l~~----- 182 (308)
T 1h6u_A 116 STQITDVT-PLAGLSNLQVLYLDLNQITN--IS-PLAGLTNLQYLSIGNAQ---VSDLTP-LANLSKLTTLKADD----- 182 (308)
T ss_dssp TSCCCCCG-GGTTCTTCCEEECCSSCCCC--CG-GGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCS-----
T ss_pred CCCCCCch-hhcCCCCCCEEECCCCccCc--Cc-cccCCCCccEEEccCCc---CCCChh-hcCCCCCCEEECCC-----
Confidence 52 1111 24444455555544443322 11 15555666666666552 112222 44555555555555
Q ss_pred ccccc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCC
Q 045237 610 QLSQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSG 661 (758)
Q Consensus 610 ~~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 661 (758)
+.+ +|.+..+ ++|+.|++++|.+.+.. .+..+++|+.|++++|.+.+
T Consensus 183 --n~l~~~~~l~~l-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 183 --NKISDISPLASL-PNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --SCCCCCGGGGGC-TTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred --CccCcChhhcCC-CCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 222 2223444 56666666666554322 25566666666666655543
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=4.3e-18 Score=195.78 Aligned_cols=61 Identities=16% Similarity=0.059 Sum_probs=28.1
Q ss_pred HHhccCCeeEEEEcCCCCCC-----CCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEcc
Q 045237 448 NICKKFKLLRVLNMGSLVLD-----QFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMP 508 (758)
Q Consensus 448 ~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 508 (758)
..+..+++|+.|+++++.++ .++..+.++++|++|++++|.+..+|..+.++++|+.|+++
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 33444445555555544443 22233334445555555554444444444444455555444
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=2.5e-16 Score=161.82 Aligned_cols=195 Identities=24% Similarity=0.226 Sum_probs=108.5
Q ss_pred eeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCC
Q 045237 455 LLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGC 532 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 532 (758)
.++.++++++.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|.+..+|.. +.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 35667777777777776554 467777777777776664 567777777777777777777655 35677777777765
Q ss_pred C--CCCCC-CCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCc
Q 045237 533 I--TLPAP-PENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGW 609 (758)
Q Consensus 533 ~--~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 609 (758)
+ ..+|. .+..+++|+.|++.++.... ..+..++.+++|+.|++++|. .. .++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~--l~-~~~~~------------------- 151 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNE--LQ-SLPKG------------------- 151 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC--CC-CCCTT-------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCc--CC-ccCHh-------------------
Confidence 2 12221 23444445555444443322 223334555555555555541 11 11111
Q ss_pred ccccccCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCC
Q 045237 610 QLSQMILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMF 684 (758)
Q Consensus 610 ~~~~llp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~ 684 (758)
.+..+ ++|+.|++++|.+....+..+..+++|++|++++|.+.+..+.. +..+++|+.|+|++|+
T Consensus 152 -------~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 152 -------VFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA--FDSLEKLKMLQLQENP 216 (270)
T ss_dssp -------TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSC
T ss_pred -------HccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH--hccccCCCEEEecCCC
Confidence 23444 56666666666555444445556666666666666554322111 3445666666666654
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=2e-18 Score=183.57 Aligned_cols=252 Identities=16% Similarity=0.155 Sum_probs=170.3
Q ss_pred cceEEeccccCCcchhhhhHHHhccC--CeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCc-c-cCccccCCCCCc
Q 045237 428 LHSLQNFALESDHSALLDCENICKKF--KLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLK-S-LPSSLCNLLNLQ 503 (758)
Q Consensus 428 Lr~L~~~~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~-~-lp~~i~~L~~L~ 503 (758)
++++.+.++... +..+..+ +.++.|+++++.+...+..+..+++|++|++++|.++ . +|..+.++++|+
T Consensus 49 ~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred heeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 667777665443 3445555 7888999999888866666778889999999998877 2 787888899999
Q ss_pred EEEccCCcCc-ccchhhcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCch
Q 045237 504 TLDMPSSYID-HTPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSS 582 (758)
Q Consensus 504 ~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 582 (758)
+|++++|.+. ..|..+.++++|++|+++++..+. ....+..+..+++|++|++++|...
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~--------------------~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS--------------------EFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC--------------------HHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC--------------------HHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 9999998775 456777778888888876531110 0013444556777788888777212
Q ss_pred hhhhHHHHhhccC-CCceEEeeecCCCcccccc----cC-CcCCCCCCccEEEEeecc-CCCCCcccccCCCCCceEEEe
Q 045237 583 YQSGLSKSLRELL-KLESLKLVNKSKGWQLSQM----IL-SEYQFPPSLTQLSLSNTE-LKEDPMPTLEKLPHLLVLKLK 655 (758)
Q Consensus 583 ~~~~l~~~l~~~~-~L~~L~L~~~~~~~~~~~l----lp-~~~~l~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~ 655 (758)
....++..+..++ +|+.|+++++. ..+ +| .+..+ ++|+.|++++|. +++..+..++.+++|++|+++
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~-----~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYR-----KNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCG-----GGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCc-----ccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 2223566677777 88888887731 012 34 44556 888888888888 666677788888999999998
Q ss_pred ccc-cCCceeEEeCCCCCccccEEeeccCCCcCceEECcccc-cccceeeEeccccCCCCchhhc
Q 045237 656 QNS-YSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAM-TKLESLIINPCAYLKKLPEELW 718 (758)
Q Consensus 656 ~n~-~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~ 718 (758)
+|. +....... +..+++|+.|++++| +..- .+..+ .+|+.|++++|......|..+.
T Consensus 256 ~~~~~~~~~~~~--l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 256 RCYDIIPETLLE--LGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TCTTCCGGGGGG--GGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCHHHHHH--HhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 885 22221111 456889999999988 2211 12334 3477888887776666665544
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=6.2e-17 Score=166.51 Aligned_cols=209 Identities=18% Similarity=0.169 Sum_probs=121.1
Q ss_pred ccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchh-hcccccCcEEE
Q 045237 451 KKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLN 529 (758)
Q Consensus 451 ~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~ 529 (758)
..+++|+.|+++++.+..++ .++.+++|++|++++|.++.++ .+.++++|++|++++|.+..+|.. +.++++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 34566777777777776655 3677777777777777777654 667777777777777777666544 45666666666
Q ss_pred cCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCc
Q 045237 530 FGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGW 609 (758)
Q Consensus 530 l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 609 (758)
++++ .... ..+..++.+++|+.|++++|. .....+.
T Consensus 116 L~~n---------------------~l~~-~~~~~~~~l~~L~~L~L~~n~--l~~~~~~-------------------- 151 (272)
T 3rfs_A 116 LVEN---------------------QLQS-LPDGVFDKLTNLTYLNLAHNQ--LQSLPKG-------------------- 151 (272)
T ss_dssp CTTS---------------------CCCC-CCTTTTTTCTTCCEEECCSSC--CCCCCTT--------------------
T ss_pred CCCC---------------------cCCc-cCHHHhccCCCCCEEECCCCc--cCccCHH--------------------
Confidence 6542 2111 222334556666666666551 1111111
Q ss_pred ccccccCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCce
Q 045237 610 QLSQMILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEW 689 (758)
Q Consensus 610 ~~~~llp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 689 (758)
.+..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+.. +..+++|+.|++++|+.
T Consensus 152 -------~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~---- 217 (272)
T 3rfs_A 152 -------VFDKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTSLQYIWLHDNPW---- 217 (272)
T ss_dssp -------TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCB----
T ss_pred -------HhccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH--HhCCcCCCEEEccCCCc----
Confidence 23334 55666666666555444444566666666666666555433221 34566666666666541
Q ss_pred EECcccccccceeeEeccccCCCCchhhcCCCC
Q 045237 690 TMGARAMTKLESLIINPCAYLKKLPEELWRIES 722 (758)
Q Consensus 690 ~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~s 722 (758)
.+.+|+|+.|.+..|.....+|..++.++.
T Consensus 218 ---~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 218 ---DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ---CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ---cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 234566666666666655666666555544
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=9.5e-17 Score=165.58 Aligned_cols=216 Identities=20% Similarity=0.207 Sum_probs=143.0
Q ss_pred EEEcCCCCCCCCCccccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCcccch-hhcccccCcEEEcCCC--
Q 045237 458 VLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHLNFGCI-- 533 (758)
Q Consensus 458 ~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~-- 533 (758)
..+..+..+..+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.+..++. .+.++++|++|+++++
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34556666778887664 589999999999998776 78999999999999999988865 5888999999999873
Q ss_pred CC-CCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhh-hHHHHhhccCCCceEEeeecCCCccc
Q 045237 534 TL-PAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQS-GLSKSLRELLKLESLKLVNKSKGWQL 611 (758)
Q Consensus 534 ~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~l~~~l~~~~~L~~L~L~~~~~~~~~ 611 (758)
.. .+..+..+++|++|++.++.... ..+..++.+++|+.|++++|. ... .+|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~--l~~~~l~~---------------------- 143 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNL--IQSFKLPE---------------------- 143 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSC--CCCCCCCG----------------------
T ss_pred CccChhhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCc--cceecCch----------------------
Confidence 12 23446667777777766665443 333346666666666666652 111 1233
Q ss_pred ccccCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCc----eEEEeccccCCceeEEeCCCCCccccEEeeccCCCcC
Q 045237 612 SQMILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLL----VLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLE 687 (758)
Q Consensus 612 ~~llp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~----~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 687 (758)
.+..+ ++|+.|++++|.+....+..+..+++|+ .|++++|.+.+..+. .....+|+.|++++|. ++
T Consensus 144 -----~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~---~~~~~~L~~L~L~~n~-l~ 213 (276)
T 2z62_A 144 -----YFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIRLKELALDTNQ-LK 213 (276)
T ss_dssp -----GGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT---SSCSCCEEEEECCSSC-CS
T ss_pred -----hhccC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc---ccCCCcccEEECCCCc-ee
Confidence 44444 6666666666666554455555555555 677776666532211 1223467777777765 66
Q ss_pred ceEEC-cccccccceeeEeccccC
Q 045237 688 EWTMG-ARAMTKLESLIINPCAYL 710 (758)
Q Consensus 688 ~l~~~-~~~l~~L~~L~l~~c~~l 710 (758)
.+|.. +..+++|+.|++++|+..
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ecCHhHhcccccccEEEccCCccc
Confidence 66543 466788888888877743
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=3e-16 Score=162.79 Aligned_cols=195 Identities=17% Similarity=0.099 Sum_probs=118.3
Q ss_pred hccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCccc-CccccCCCCCcEEEccCCcCcccchhhcccccCcEE
Q 045237 450 CKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSL-PSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHL 528 (758)
Q Consensus 450 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 528 (758)
+.++++|+.++++++.++.+|..+. ++|++|++++|.++.+ |..+.++++|++|++++|.+..+|.. ..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 4566778888888888887776664 5788888888887755 45677888888888888887777654 677777777
Q ss_pred EcCC--CCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecC
Q 045237 529 NFGC--ITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKS 606 (758)
Q Consensus 529 ~l~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 606 (758)
++++ ...+|..+..+++|+.|++.++.... ..+..+..+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~-- 157 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLAN-- 157 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTT--
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCC--CCccChhhcccccCCCEEECCC--
Confidence 7766 33445555566666666655554433 333456666666666666662 2222222334455555555554
Q ss_pred CCcccccc--cC--CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEecccc
Q 045237 607 KGWQLSQM--IL--SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSY 659 (758)
Q Consensus 607 ~~~~~~~l--lp--~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~ 659 (758)
+.+ +| .+..+ ++|+.|+|++|.+. .+|..+..+++|+.|+|++|.+
T Consensus 158 -----N~l~~l~~~~~~~l-~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 158 -----NNLTELPAGLLNGL-ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -----SCCSCCCTTTTTTC-TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred -----CcCCccCHHHhcCc-CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 333 33 23344 55555555555543 3444455555555555555543
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=9.4e-17 Score=165.19 Aligned_cols=208 Identities=16% Similarity=0.136 Sum_probs=147.5
Q ss_pred EEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCCCC
Q 045237 457 RVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCITLP 536 (758)
Q Consensus 457 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 536 (758)
..+++..+.+... .....+.+|+.|+++++.++.++ .+..+++|++|++++|.+..++ .+.++++|++|+++++
T Consensus 22 ~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n--- 95 (272)
T 3rfs_A 22 IKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN--- 95 (272)
T ss_dssp HHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS---
T ss_pred HHHHhcCcccccc-cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC---
Confidence 3445555555433 23567788899999988888776 5788889999999988887764 5667777777777543
Q ss_pred CCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccC
Q 045237 537 APPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL 616 (758)
Q Consensus 537 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp 616 (758)
.... ..+..++.+++|+.|++++|. .. .+.|
T Consensus 96 ------------------~l~~-~~~~~~~~l~~L~~L~L~~n~--l~----------------------------~~~~ 126 (272)
T 3rfs_A 96 ------------------QLQS-LPNGVFDKLTNLKELVLVENQ--LQ----------------------------SLPD 126 (272)
T ss_dssp ------------------CCCC-CCTTTTTTCTTCCEEECTTSC--CC----------------------------CCCT
T ss_pred ------------------ccCc-cChhHhcCCcCCCEEECCCCc--CC----------------------------ccCH
Confidence 1111 223345667777777777762 11 1122
Q ss_pred -CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEE-Ccc
Q 045237 617 -SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTM-GAR 694 (758)
Q Consensus 617 -~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~ 694 (758)
.+..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..+.. +..+++|+.|++++|. +..++. .++
T Consensus 127 ~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~N~-l~~~~~~~~~ 202 (272)
T 3rfs_A 127 GVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV--FDKLTQLKDLRLYQNQ-LKSVPDGVFD 202 (272)
T ss_dssp TTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred HHhccC-CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH--hcCCccCCEEECCCCc-CCccCHHHHh
Confidence 35566 89999999999988777777899999999999999887644322 5778999999999986 666654 468
Q ss_pred cccccceeeEeccccCCCCchhhcCCCCCcEEEEec
Q 045237 695 AMTKLESLIINPCAYLKKLPEELWRIESFRKLELHW 730 (758)
Q Consensus 695 ~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~ 730 (758)
.+++|+.|++.+|+.... +++|+.|.+..
T Consensus 203 ~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~ 231 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWI 231 (272)
T ss_dssp TCTTCCEEECCSSCBCCC-------TTTTHHHHHHH
T ss_pred CCcCCCEEEccCCCcccc-------CcHHHHHHHHH
Confidence 899999999999986544 34555554443
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=1.9e-16 Score=164.33 Aligned_cols=199 Identities=22% Similarity=0.255 Sum_probs=134.5
Q ss_pred ccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccc-hhhcccccCcEEEcCCCCCCCCCCCccccCccccc
Q 045237 473 IENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTP-EDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIF 551 (758)
Q Consensus 473 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l 551 (758)
++++++|+.+++++++++.+|..+. ++|+.|++++|.+..++ ..+..+++|++|+++++. +..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-----------l~~--- 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-----------LTK--- 69 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-----------CCE---
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-----------cCc---
Confidence 6778899999999999999998775 79999999999988874 568888888888887631 111
Q ss_pred ccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccCCcCCCCCCccEEEEe
Q 045237 552 ISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMILSEYQFPPSLTQLSLS 631 (758)
Q Consensus 552 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp~~~~l~~~L~~L~L~ 631 (758)
++. .+.+++|+.|+++++. ...+|. .+..+ ++|+.|+++
T Consensus 70 ---------~~~-~~~l~~L~~L~Ls~N~---l~~l~~---------------------------~~~~l-~~L~~L~l~ 108 (290)
T 1p9a_G 70 ---------LQV-DGTLPVLGTLDLSHNQ---LQSLPL---------------------------LGQTL-PALTVLDVS 108 (290)
T ss_dssp ---------EEC-CSCCTTCCEEECCSSC---CSSCCC---------------------------CTTTC-TTCCEEECC
T ss_pred ---------ccC-CCCCCcCCEEECCCCc---CCcCch---------------------------hhccC-CCCCEEECC
Confidence 111 1467788888888772 222332 33444 666666666
Q ss_pred eccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEEC-cccccccceeeEeccccC
Q 045237 632 NTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMG-ARAMTKLESLIINPCAYL 710 (758)
Q Consensus 632 ~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l 710 (758)
+|.+....+..+..+++|++|+|++|.+.+..+.. +..+++|+.|+|++|. ++.+|.. +..+++|+.|++++|. +
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l 184 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-L 184 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh--cccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc-C
Confidence 66666555556667777777777766665432211 4556677777777664 5555543 3557777777777776 5
Q ss_pred CCCchhhcCCCCCcEEEEecCc
Q 045237 711 KKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 711 ~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
..+|..+..+++|+.|++.++|
T Consensus 185 ~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 185 YTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCTTTTTTCCCSEEECCSCC
T ss_pred CccChhhcccccCCeEEeCCCC
Confidence 5677777777777777777655
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=6.7e-18 Score=194.25 Aligned_cols=322 Identities=16% Similarity=0.135 Sum_probs=191.1
Q ss_pred CceeEEEeeCCCCcccccccc--c-cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCC-----CCccccC
Q 045237 404 RTIKRFAVPKNLTKFVSLEHI--D-TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQ-----FPSGIEN 475 (758)
Q Consensus 404 ~~~r~Ls~~~~~~~~~~~~~~--~-~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~~ 475 (758)
..+++|.+..+.........+ . ++|++|.+.++..... ..+...+.++++|++|++++|.++. ++.....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST--DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH--HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH--HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 456777777433222223333 2 7888888887633211 3355666788999999999988652 3333446
Q ss_pred cccccEEeccCCC--Cc--ccCccccCCCCCcEEEccCC-cCcccchhhcccccCcEEEcCCCC----------------
Q 045237 476 LFLLRCLKLDVPS--LK--SLPSSLCNLLNLQTLDMPSS-YIDHTPEDIWNMHKLMHLNFGCIT---------------- 534 (758)
Q Consensus 476 l~~Lr~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l~~~~---------------- 534 (758)
+++|++|++++|. +. .++..+.++++|++|++++| .+..+|..+.++++|++|+++...
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7789999998886 32 34434456789999999988 667777777788888888753210
Q ss_pred -----------------CCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCC
Q 045237 535 -----------------LPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKL 597 (758)
Q Consensus 535 -----------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L 597 (758)
.++..+..+++|+.|++.+|..........+..+++|++|++++| .....++.....+++|
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDL 340 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCC
Confidence 112222356788888888777433123334678899999999988 3444555555568889
Q ss_pred ceEEeeecCCC--cccccc----cC-------------------------CcC-CCCCCccEEEEe--e---c-cCCCCC
Q 045237 598 ESLKLVNKSKG--WQLSQM----IL-------------------------SEY-QFPPSLTQLSLS--N---T-ELKEDP 639 (758)
Q Consensus 598 ~~L~L~~~~~~--~~~~~l----lp-------------------------~~~-~l~~~L~~L~L~--~---~-~l~~~~ 639 (758)
+.|++..++.. ...+.+ +. .+. .+ ++|+.|+++ + | .++...
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCCC
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCCc
Confidence 99988431000 000011 00 111 23 555666665 1 1 222110
Q ss_pred -----cccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEEC-cccccccceeeEeccccCCC-
Q 045237 640 -----MPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMG-ARAMTKLESLIINPCAYLKK- 712 (758)
Q Consensus 640 -----~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~- 712 (758)
+..+..+++|+.|++++ .+.+..+... ...+++|+.|+|++|.....-+.. ...+++|+.|++++|+....
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l-~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI-GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH-HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHH-HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 11134455666666643 3322221111 112677888888887632211112 25689999999999996222
Q ss_pred CchhhcCCCCCcEEEEecCc
Q 045237 713 LPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 713 lp~~l~~l~sL~~L~l~~c~ 732 (758)
++..+..+++|+.|++++|+
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHhCCCCCEEeeeCCC
Confidence 22345568999999999998
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=9.1e-16 Score=157.60 Aligned_cols=194 Identities=22% Similarity=0.251 Sum_probs=141.5
Q ss_pred cccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccch-hhcccccCcEEEcCCC--CCCCCCCCccccCcccccccc
Q 045237 478 LLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHLNFGCI--TLPAPPENYCSSLKNLIFISA 554 (758)
Q Consensus 478 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~~ 554 (758)
+++++++++++++.+|..+. .+|++|++++|.+..+|. .+.++++|++|+++++ ..+|..
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~--------------- 79 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG--------------- 79 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT---------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh---------------
Confidence 68899999999999998775 789999999999998875 5888999999998763 222222
Q ss_pred cCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--c-C-CcCCCCCCccEEEE
Q 045237 555 LHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--I-L-SEYQFPPSLTQLSL 630 (758)
Q Consensus 555 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--l-p-~~~~l~~~L~~L~L 630 (758)
.+..+++|+.|+++++. .....+..+..+++|+.|++++ +.+ + | .+..+ ++|++|+|
T Consensus 80 ---------~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~~~~l-~~L~~L~L 140 (270)
T 2o6q_A 80 ---------IFKELKNLETLWVTDNK--LQALPIGVFDQLVNLAELRLDR-------NQLKSLPPRVFDSL-TKLTYLSL 140 (270)
T ss_dssp ---------TTSSCTTCCEEECCSSC--CCCCCTTTTTTCSSCCEEECCS-------SCCCCCCTTTTTTC-TTCCEEEC
T ss_pred ---------hhcCCCCCCEEECCCCc--CCcCCHhHcccccCCCEEECCC-------CccCeeCHHHhCcC-cCCCEEEC
Confidence 22344455555555441 1111122344555566666555 333 2 3 46677 99999999
Q ss_pred eeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEEC-cccccccceeeEecccc
Q 045237 631 SNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMG-ARAMTKLESLIINPCAY 709 (758)
Q Consensus 631 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~ 709 (758)
++|.+....+..++.+++|+.|++++|.+.+..+.. +..+++|+.|+|++|. ++.+|.. +..+++|+.|++.+|+.
T Consensus 141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA--FDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCCccCHhHccCCcccceeEecCCcCcEeChhH--hccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCCe
Confidence 999988766667899999999999999887644322 5678999999999985 6777654 67899999999999984
Q ss_pred C
Q 045237 710 L 710 (758)
Q Consensus 710 l 710 (758)
.
T Consensus 218 ~ 218 (270)
T 2o6q_A 218 D 218 (270)
T ss_dssp C
T ss_pred e
Confidence 3
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=4.7e-18 Score=184.50 Aligned_cols=250 Identities=14% Similarity=0.106 Sum_probs=170.7
Q ss_pred hhhHHHhccCCeeEEEEcCCCCCCC-----CCccccCcccccEEeccCCCCc----ccCccc-------cCCCCCcEEEc
Q 045237 444 LDCENICKKFKLLRVLNMGSLVLDQ-----FPSGIENLFLLRCLKLDVPSLK----SLPSSL-------CNLLNLQTLDM 507 (758)
Q Consensus 444 ~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L 507 (758)
..+...+..+++|+.|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3445677888999999999998872 4556778999999999997544 445444 68999999999
Q ss_pred cCCcCcc-----cchhhcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCC---------CCCCe
Q 045237 508 PSSYIDH-----TPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRL---------PNVQT 573 (758)
Q Consensus 508 ~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l---------~~L~~ 573 (758)
++|.+.. +|..+.++++|++|+++++.....+.. .++..+..+ ++|++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~------------------~l~~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA------------------KIARALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH------------------HHHHHHHHHHHHHHHHTCCCCCE
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH------------------HHHHHHHHHhhhhhcccCCCCcE
Confidence 9998876 788888999999999976411000000 011112222 78888
Q ss_pred EEEEecCc--hhhhhHHHHhhccCCCceEEeeecCCC-cccccccC-CcCCCCCCccEEEEeeccCC----CCCcccccC
Q 045237 574 LKIYGDLS--SYQSGLSKSLRELLKLESLKLVNKSKG-WQLSQMIL-SEYQFPPSLTQLSLSNTELK----EDPMPTLEK 645 (758)
Q Consensus 574 L~l~~~~~--~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~llp-~~~~l~~~L~~L~L~~~~l~----~~~~~~l~~ 645 (758)
|++++|.- .....+...+..+++|+.|++++|.-. .....++| .+..+ ++|+.|+|++|.++ ..++..+..
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 88888741 122233356777888888888873210 00001255 66777 88999999988874 446677888
Q ss_pred CCCCceEEEeccccCCce----eEEeCCCCCccccEEeeccCCCcCc-----eEECc-ccccccceeeEeccccCCCC
Q 045237 646 LPHLLVLKLKQNSYSGRK----LACVGSGGFPKLKILHLKSMFWLEE-----WTMGA-RAMTKLESLIINPCAYLKKL 713 (758)
Q Consensus 646 l~~L~~L~L~~n~~~~~~----~~~~~~~~~~~L~~L~L~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~~l~~l 713 (758)
+++|+.|+|++|.+.+.. +.....+.+++|+.|+|++|. +.. +|..+ .++++|+.|++++|+.....
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 899999999988876541 111101347889999999886 443 66655 56899999999999855544
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=4.1e-16 Score=166.61 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=66.9
Q ss_pred EEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcC-cccchh-hcccccCcEEE-cCC
Q 045237 457 RVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYI-DHTPED-IWNMHKLMHLN-FGC 532 (758)
Q Consensus 457 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l-~~lp~~-i~~l~~L~~L~-l~~ 532 (758)
++++.+++.++++|..+. .++++|+|++|+|+.+|. .+.+|++|++|+|++|.+ +.+|.+ +.++++|..+. +++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 567778888888887663 588999999999998886 478899999999999976 446643 56777766543 321
Q ss_pred --CCCC-CCCCCccccCcccccccccC
Q 045237 533 --ITLP-APPENYCSSLKNLIFISALH 556 (758)
Q Consensus 533 --~~~~-~~~~~~l~~L~~L~l~~~~~ 556 (758)
...+ |..+..+++|+.|++.++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred CcccccCchhhhhcccccccccccccc
Confidence 2223 23345556666666555543
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=5.2e-16 Score=162.63 Aligned_cols=200 Identities=21% Similarity=0.200 Sum_probs=128.3
Q ss_pred cCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCC-CCCCC
Q 045237 461 MGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCIT-LPAPP 539 (758)
Q Consensus 461 L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~-~~~~~ 539 (758)
+..+.+.... ....+++|++|++++|.++.+| .+..+++|++|++++|.+..+|. +..+++|++|+++++. ...+.
T Consensus 26 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 102 (308)
T 1h6u_A 26 AGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSA 102 (308)
T ss_dssp TTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGG
T ss_pred hCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchh
Confidence 4444444322 3567899999999999999988 78999999999999999999988 9999999999998731 11234
Q ss_pred CCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cCC
Q 045237 540 ENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--ILS 617 (758)
Q Consensus 540 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp~ 617 (758)
+..+++|+.|++.++.... . ..+..+++|+.|++++|. ...++. +..+++|+.|++++ +.+ +|.
T Consensus 103 ~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~l~~-------n~l~~~~~ 168 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD--V-TPLAGLSNLQVLYLDLNQ---ITNISP-LAGLTNLQYLSIGN-------AQVSDLTP 168 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC--C-GGGTTCTTCCEEECCSSC---CCCCGG-GGGCTTCCEEECCS-------SCCCCCGG
T ss_pred hcCCCCCCEEECCCCCCCC--c-hhhcCCCCCCEEECCCCc---cCcCcc-ccCCCCccEEEccC-------CcCCCChh
Confidence 6667777777777665533 2 236777777777777762 222222 55566666666665 333 223
Q ss_pred cCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCC
Q 045237 618 EYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMF 684 (758)
Q Consensus 618 ~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~ 684 (758)
+..+ ++|+.|++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|+
T Consensus 169 l~~l-~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 LANL-SKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQT 228 (308)
T ss_dssp GTTC-TTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEE
T ss_pred hcCC-CCCCEEECCCCccCcC-h-hhcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCe
Confidence 4444 5666666666655432 2 25555666666666555544321 3455556666665554
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=2.5e-17 Score=175.16 Aligned_cols=254 Identities=14% Similarity=0.089 Sum_probs=172.5
Q ss_pred eeEEEeeCCCCccccccccc-cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCC-C-CCccccCcccccEE
Q 045237 406 IKRFAVPKNLTKFVSLEHID-TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLD-Q-FPSGIENLFLLRCL 482 (758)
Q Consensus 406 ~r~Ls~~~~~~~~~~~~~~~-~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~-lp~~i~~l~~Lr~L 482 (758)
.+++.+..+.........+. .+++.|.+.++.... ..+ .+..+++|+.|++++|.+. . +|..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~----~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ----PLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECS----CCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCCHHHHHhhhhccceEEEcCCccccc----cch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 55666652222211222222 778999888876643 122 2457899999999999987 3 88889999999999
Q ss_pred eccCCCCc-ccCccccCCCCCcEEEccCC-cCcc--cchhhcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCC
Q 045237 483 KLDVPSLK-SLPSSLCNLLNLQTLDMPSS-YIDH--TPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPC 558 (758)
Q Consensus 483 ~L~~~~i~-~lp~~i~~L~~L~~L~L~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 558 (758)
++++|.++ ..|..++++++|++|++++| .+.. +|..+.++++|++|+++++..+ ..
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l--------------------~~ 183 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF--------------------TE 183 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC--------------------CH
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc--------------------Ch
Confidence 99999988 77888999999999999999 7874 7777888999999988753111 00
Q ss_pred CCCccccCCCC-CCCeEEEEecC-chhhhhHHHHhhccCCCceEEeeecCCCcccccccC-CcCCCCCCccEEEEeecc-
Q 045237 559 SCTPDTLGRLP-NVQTLKIYGDL-SSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQFPPSLTQLSLSNTE- 634 (758)
Q Consensus 559 ~~~~~~l~~l~-~L~~L~l~~~~-~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~l~~~L~~L~L~~~~- 634 (758)
...+..+..++ +|++|++++|. ......++..+..+++|+.|++++|.. +..-.+ .+..+ ++|+.|++++|.
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~---l~~~~~~~l~~l-~~L~~L~l~~~~~ 259 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM---LKNDCFQEFFQL-NYLQHLSLSRCYD 259 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT---CCGGGGGGGGGC-TTCCEEECTTCTT
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc---CCHHHHHHHhCC-CCCCEeeCCCCCC
Confidence 01344566677 88888888873 122256777778888999999888310 001123 66777 899999999985
Q ss_pred CCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCC-ccccEEeeccCCCcCceEECcc
Q 045237 635 LKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGF-PKLKILHLKSMFWLEEWTMGAR 694 (758)
Q Consensus 635 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~ 694 (758)
+.......++++++|+.|++++| +..... ..+ .+|+.|++++|......|..++
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~-----~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPDGTL-----QLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCTTCH-----HHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCHHHH-----HHHHhhCcceEEecccCccccCCccc
Confidence 32223336788999999999987 433221 122 3467777876653334444443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=5.9e-16 Score=155.93 Aligned_cols=206 Identities=18% Similarity=0.227 Sum_probs=131.7
Q ss_pred CCCCCccccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCc-CcccchhhcccccCcEEEcCCCCCCCCCCCcc
Q 045237 466 LDQFPSGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSY-IDHTPEDIWNMHKLMHLNFGCITLPAPPENYC 543 (758)
Q Consensus 466 l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l 543 (758)
++.+|. +.. +|++|++++|.++.+|. .+.++++|++|++++|. ++.+|.. .+..+
T Consensus 23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~--------------------~f~~l 79 (239)
T 2xwt_C 23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH--------------------SFYNL 79 (239)
T ss_dssp CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT--------------------TEESC
T ss_pred ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh--------------------HcCCC
Confidence 555665 332 66677777766666655 45666667777776664 6555431 12333
Q ss_pred ccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccCCcCCCCC
Q 045237 544 SSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMILSEYQFPP 623 (758)
Q Consensus 544 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp~~~~l~~ 623 (758)
++|++|++.+++......+..+..+++|+.|++++|. ... +|.+..+ +
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~---l~~----------------------------lp~~~~l-~ 127 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG---LKM----------------------------FPDLTKV-Y 127 (239)
T ss_dssp TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC---CCS----------------------------CCCCTTC-C
T ss_pred cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC---Ccc----------------------------ccccccc-c
Confidence 3444444444222221223445666777777777662 111 2222233 4
Q ss_pred Ccc---EEEEeec-cCCCCCcccccCCCCCc-eEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEE-Ccccc-
Q 045237 624 SLT---QLSLSNT-ELKEDPMPTLEKLPHLL-VLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTM-GARAM- 696 (758)
Q Consensus 624 ~L~---~L~L~~~-~l~~~~~~~l~~l~~L~-~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l- 696 (758)
+|+ .|++++| .+....+..+..+++|+ .|++++|.+. ..+... +.. ++|+.|++++|+.++.++. .+..+
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~-~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA-FNG-TKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT-TTT-CEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh-cCC-CCCCEEEcCCCCCcccCCHHHhhccc
Confidence 454 8888888 77655566788899999 9999988776 333322 333 7899999999876887764 46778
Q ss_pred cccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 697 TKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 697 ~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
++|+.|++++|+ +..+|.. .+++|+.|++.++.
T Consensus 205 ~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 205 SGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp BCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred cCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 999999999987 6678764 68899999999876
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=9e-17 Score=174.36 Aligned_cols=232 Identities=15% Similarity=0.104 Sum_probs=135.9
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCC----CCCccc-------cCcccccEEeccCCCCcc---
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLD----QFPSGI-------ENLFLLRCLKLDVPSLKS--- 491 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~----~lp~~i-------~~l~~Lr~L~L~~~~i~~--- 491 (758)
+++++|.+.++.........+...+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 778999998887754322334456789999999999998655 345444 688999999999999885
Q ss_pred --cCccccCCCCCcEEEccCCcCcc-----cchhhccc---------ccCcEEEcCCCCCCCCCCCccccCccccccccc
Q 045237 492 --LPSSLCNLLNLQTLDMPSSYIDH-----TPEDIWNM---------HKLMHLNFGCITLPAPPENYCSSLKNLIFISAL 555 (758)
Q Consensus 492 --lp~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~l---------~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~ 555 (758)
+|..+.++++|++|+|++|.+.. ++..+..+ ++|++|+++++.....++.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------- 177 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK-------------- 177 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--------------
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--------------
Confidence 88889999999999999998853 34445455 7888888876411100000
Q ss_pred CCCCCCccccCCCCCCCeEEEEecCch--hhhhHHH-HhhccCCCceEEeeecCCCcccccc-------cC-CcCCCCCC
Q 045237 556 HPCSCTPDTLGRLPNVQTLKIYGDLSS--YQSGLSK-SLRELLKLESLKLVNKSKGWQLSQM-------IL-SEYQFPPS 624 (758)
Q Consensus 556 ~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~-~l~~~~~L~~L~L~~~~~~~~~~~l-------lp-~~~~l~~~ 624 (758)
.+...+..+++|++|++++|.-. ....+.. .+..+++|+.|+|++ +.+ +| .+..+ ++
T Consensus 178 ----~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-------n~l~~~g~~~l~~~l~~~-~~ 245 (386)
T 2ca6_A 178 ----EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-------NTFTHLGSSALAIALKSW-PN 245 (386)
T ss_dssp ----HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-------SCCHHHHHHHHHHHGGGC-TT
T ss_pred ----HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC-------CCCCcHHHHHHHHHHccC-CC
Confidence 01123334445555555554210 0011222 444555555555554 222 33 44444 55
Q ss_pred ccEEEEeeccCCCC----Ccccc--cCCCCCceEEEeccccCCc----eeEEeCCCCCccccEEeeccCC
Q 045237 625 LTQLSLSNTELKED----PMPTL--EKLPHLLVLKLKQNSYSGR----KLACVGSGGFPKLKILHLKSMF 684 (758)
Q Consensus 625 L~~L~L~~~~l~~~----~~~~l--~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~~~L~~L~L~~~~ 684 (758)
|+.|+|++|.+... ++..+ +.+++|+.|+|++|.+.+. .+... ...+++|+.|++++|+
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI-DEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH-HHHCTTCCEEECTTSB
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH-HhcCCCceEEEccCCc
Confidence 56666655554432 23333 2356666666665555441 22211 1335666666666654
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=9.8e-16 Score=154.30 Aligned_cols=102 Identities=20% Similarity=0.236 Sum_probs=79.9
Q ss_pred CeeEEEEcCCCCCCCCCc-cccCcccccEEeccCCC-CcccCc-cccCCCCCcEEEccC-CcCcccch-hhcccccCcEE
Q 045237 454 KLLRVLNMGSLVLDQFPS-GIENLFLLRCLKLDVPS-LKSLPS-SLCNLLNLQTLDMPS-SYIDHTPE-DIWNMHKLMHL 528 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~l~~lp~-~i~~l~~L~~L 528 (758)
+.|+.|++++|.++.+|. .++.+++|++|++++|. ++.+|. .+.++++|++|++++ |.+..+|. .+.+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~----- 105 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP----- 105 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT-----
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC-----
Confidence 379999999999998775 78999999999999997 998876 689999999999998 78888764 244444
Q ss_pred EcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCC---eEEEEec
Q 045237 529 NFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQ---TLKIYGD 579 (758)
Q Consensus 529 ~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~---~L~l~~~ 579 (758)
+|+.|++.++.... +|. ++.+++|+ .|++++|
T Consensus 106 ----------------~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 106 ----------------LLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp ----------------TCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESC
T ss_pred ----------------CCCEEeCCCCCCcc--ccc-cccccccccccEEECCCC
Confidence 45555555655433 444 77777777 8888876
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=3.3e-15 Score=159.62 Aligned_cols=78 Identities=13% Similarity=0.024 Sum_probs=35.0
Q ss_pred eeEEEEcCCCCCCCCCc-cccCcccccEEeccCCCCc-ccCc-cccCCCCCcE-EEccCCcCcccc-hhhcccccCcEEE
Q 045237 455 LLRVLNMGSLVLDQFPS-GIENLFLLRCLKLDVPSLK-SLPS-SLCNLLNLQT-LDMPSSYIDHTP-EDIWNMHKLMHLN 529 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~-~lp~-~i~~L~~L~~-L~L~~~~l~~lp-~~i~~l~~L~~L~ 529 (758)
+++.|+|++|.++.+|. .|.++++|++|+|++|.+. .+|. .+.++++|+. +.+++|.+..+| ..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34455555555554443 3445555555555555442 2332 2344444443 223333444442 2244455555555
Q ss_pred cCC
Q 045237 530 FGC 532 (758)
Q Consensus 530 l~~ 532 (758)
+++
T Consensus 111 l~~ 113 (350)
T 4ay9_X 111 ISN 113 (350)
T ss_dssp EEE
T ss_pred ccc
Confidence 443
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=1.2e-16 Score=183.83 Aligned_cols=300 Identities=14% Similarity=0.114 Sum_probs=173.5
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCC-CCCCCccccCcccccEEeccCCC----------------
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLV-LDQFPSGIENLFLLRCLKLDVPS---------------- 488 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~l~~Lr~L~L~~~~---------------- 488 (758)
++|++|.+..+. .......+...+.++++|+.|++++|. +..+|..+..+++|++|++..+.
T Consensus 184 ~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 577777776654 111113334445567777788877773 44555556666666666644331
Q ss_pred ---------------CcccCccccCCCCCcEEEccCCcCcc--cchhhcccccCcEEEcCCCCC---CCCCCCccccCcc
Q 045237 489 ---------------LKSLPSSLCNLLNLQTLDMPSSYIDH--TPEDIWNMHKLMHLNFGCITL---PAPPENYCSSLKN 548 (758)
Q Consensus 489 ---------------i~~lp~~i~~L~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~---~~~~~~~l~~L~~ 548 (758)
...+|..+..+++|++|++++|.+.. ++..+.++++|++|++.+... ++.....+++|++
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCE
Confidence 12344444456777777777776432 233355677777777765210 1111123667777
Q ss_pred cccccc--------cCCCCCCcccc-CCCCCCCeEEEEecCchhhhhHHHHhh-ccCCCceEEeeecC--CCccccc---
Q 045237 549 LIFISA--------LHPCSCTPDTL-GRLPNVQTLKIYGDLSSYQSGLSKSLR-ELLKLESLKLVNKS--KGWQLSQ--- 613 (758)
Q Consensus 549 L~l~~~--------~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~l~~~l~-~~~~L~~L~L~~~~--~~~~~~~--- 613 (758)
|++.++ ..........+ ..+++|+.|.+..+ ......+..+. .+++|+.|++..++ ..-.+..
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~--~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR--QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES--CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC--CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 776432 11111112222 24778888866655 23333333443 57899999998311 0000000
Q ss_pred --ccC-CcCCCCCCccEEEEeeccCCCCCcccccC-CCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCc-
Q 045237 614 --MIL-SEYQFPPSLTQLSLSNTELKEDPMPTLEK-LPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEE- 688 (758)
Q Consensus 614 --llp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~- 688 (758)
-++ .+..+ ++|+.|++++ .+.+..+..++. +++|+.|+|++|.+++..+... ..++++|+.|+|++|+....
T Consensus 421 ~~~~~~l~~~~-~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l-~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 421 DIGFGAIVEHC-KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV-LSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp HHHHHHHHHHC-TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH-HHHCTTCCEEEEESCSCCHHH
T ss_pred hhHHHHHHhhC-CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH-HhcCCCcCEEECcCCCCcHHH
Confidence 012 24456 8999999977 555555555655 8999999999998765543332 25689999999999985222
Q ss_pred eEECcccccccceeeEeccccCCCCchhh-cCCCCCcEEEEecC
Q 045237 689 WTMGARAMTKLESLIINPCAYLKKLPEEL-WRIESFRKLELHWP 731 (758)
Q Consensus 689 l~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~sL~~L~l~~c 731 (758)
+......+++|+.|++++|+....-...+ ..+|.|+...+.+.
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 22345678999999999998622111223 45677776666544
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=154.53 Aligned_cols=226 Identities=17% Similarity=0.159 Sum_probs=148.1
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCC-CCCccc--cCcccccEEeccCCCCcc-cC----cccc
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLD-QFPSGI--ENLFLLRCLKLDVPSLKS-LP----SSLC 497 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i--~~l~~Lr~L~L~~~~i~~-lp----~~i~ 497 (758)
..++.+.+.+............. +..+++|+.|++++|.+. ..|..+ +.+++|++|++++|.++. .| ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45666666665543211111111 223456999999999887 566666 888999999999998874 22 3345
Q ss_pred CCCCCcEEEccCCcCcccc-hhhcccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEE
Q 045237 498 NLLNLQTLDMPSSYIDHTP-EDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKI 576 (758)
Q Consensus 498 ~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 576 (758)
.+++|++|++++|.+..+| ..+..+++|++|+++++.... ...+ .....++.+++|++|++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~----------~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG--------ERGL----------MAALCPHKFPAIQNLAL 204 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH--------HHHH----------HTTSCTTSSCCCCSCBC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc--------chhh----------hHHHhhhcCCCCCEEEC
Confidence 7889999999999887775 457788888888887642100 0000 00112345667777777
Q ss_pred EecCchhhhhHHHH-hhccCCCceEEeeecCCCcccccc---cC-CcCCC--CCCccEEEEeeccCCCCCcccccCCCCC
Q 045237 577 YGDLSSYQSGLSKS-LRELLKLESLKLVNKSKGWQLSQM---IL-SEYQF--PPSLTQLSLSNTELKEDPMPTLEKLPHL 649 (758)
Q Consensus 577 ~~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~~~~~~l---lp-~~~~l--~~~L~~L~L~~~~l~~~~~~~l~~l~~L 649 (758)
++|.-......+.. +..+++|+.|++++ +.+ .| .+..+ +++|++|+|++|.+. .+|..+. ++|
T Consensus 205 s~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-------N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L 274 (310)
T 4glp_A 205 RNTGMETPTGVCAALAAAGVQPHSLDLSH-------NSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKL 274 (310)
T ss_dssp CSSCCCCHHHHHHHHHHHTCCCSSEECTT-------SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCC
T ss_pred CCCCCCchHHHHHHHHhcCCCCCEEECCC-------CCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCC
Confidence 77631111222222 46778888888887 444 35 44444 269999999999987 5666653 799
Q ss_pred ceEEEeccccCCceeEEeCCCCCccccEEeeccCC
Q 045237 650 LVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMF 684 (758)
Q Consensus 650 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~ 684 (758)
+.|+|++|.+.+... ...+++|+.|+|++|+
T Consensus 275 ~~L~Ls~N~l~~~~~----~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 275 RVLDLSSNRLNRAPQ----PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCEECCSCCCCSCCC----TTSCCCCSCEECSSTT
T ss_pred CEEECCCCcCCCCch----hhhCCCccEEECcCCC
Confidence 999999998876411 4678999999999886
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=3.7e-16 Score=167.86 Aligned_cols=231 Identities=16% Similarity=0.180 Sum_probs=137.7
Q ss_pred hhHHHhccCCeeEEEEcCCCCCCCCC-----ccccCcc-cccEEeccCCCCccc-CccccCC-----CCCcEEEccCCcC
Q 045237 445 DCENICKKFKLLRVLNMGSLVLDQFP-----SGIENLF-LLRCLKLDVPSLKSL-PSSLCNL-----LNLQTLDMPSSYI 512 (758)
Q Consensus 445 ~~~~~~~~l~~Lr~L~L~~~~l~~lp-----~~i~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~l 512 (758)
..+.++...++|+.|+|++|.++..+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|+|++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 45666777777999999999988665 5677888 899999999998854 5555554 9999999999988
Q ss_pred cccc-hh----hccc-ccCcEEEcCCCCCCCCC-------CCc-cccCcccccccccCCCC---CCccccCCCC-CCCeE
Q 045237 513 DHTP-ED----IWNM-HKLMHLNFGCITLPAPP-------ENY-CSSLKNLIFISALHPCS---CTPDTLGRLP-NVQTL 574 (758)
Q Consensus 513 ~~lp-~~----i~~l-~~L~~L~l~~~~~~~~~-------~~~-l~~L~~L~l~~~~~~~~---~~~~~l~~l~-~L~~L 574 (758)
...+ .. +..+ ++|++|+++++.....+ +.. .++|++|++.++..... .++..+..++ +|++|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 7654 33 4444 78999999874211111 112 24677777666654320 1222334444 67777
Q ss_pred EEEecCchhhh----hHHHHhhcc-CCCceEEeeecCCCcccccc-------cC-CcCCCCCCccEEEEeeccCCCCCc-
Q 045237 575 KIYGDLSSYQS----GLSKSLREL-LKLESLKLVNKSKGWQLSQM-------IL-SEYQFPPSLTQLSLSNTELKEDPM- 640 (758)
Q Consensus 575 ~l~~~~~~~~~----~l~~~l~~~-~~L~~L~L~~~~~~~~~~~l-------lp-~~~~l~~~L~~L~L~~~~l~~~~~- 640 (758)
++++|. ... .+...+..+ ++|+.|+|++ +.+ +| .+...+++|+.|+|++|.+....+
T Consensus 173 ~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~-------N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 173 NLRGNN--LASKNCAELAKFLASIPASVTSLDLSA-------NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp ECTTSC--GGGSCHHHHHHHHHTSCTTCCEEECTT-------SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred eecCCC--CchhhHHHHHHHHHhCCCCCCEEECCC-------CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 777763 222 222334444 4677777766 222 22 333332567777777776654433
Q ss_pred ---ccccCCCCCceEEEeccccCCceeEE-----eCCCCCccccEEeeccCC
Q 045237 641 ---PTLEKLPHLLVLKLKQNSYSGRKLAC-----VGSGGFPKLKILHLKSMF 684 (758)
Q Consensus 641 ---~~l~~l~~L~~L~L~~n~~~~~~~~~-----~~~~~~~~L~~L~L~~~~ 684 (758)
..+..+++|+.|++++|.+.+..... ..+..+++|+.|++++|.
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 23355666777777666532211100 013345556666666654
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=3e-15 Score=157.04 Aligned_cols=107 Identities=22% Similarity=0.206 Sum_probs=65.6
Q ss_pred CCCCCCccEEEEeeccCCCCCcc----cccCCCCCceEEEeccccCCceeEEe-CCCCCccccEEeeccCCCcCceEECc
Q 045237 619 YQFPPSLTQLSLSNTELKEDPMP----TLEKLPHLLVLKLKQNSYSGRKLACV-GSGGFPKLKILHLKSMFWLEEWTMGA 693 (758)
Q Consensus 619 ~~l~~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~l~~~~ 693 (758)
..+ ++|++|++++|.+. .++. .++.+++|++|+|++|.+.+..|... ....+++|+.|+|++|. ++.+|..+
T Consensus 194 ~~l-~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~ 270 (310)
T 4glp_A 194 HKF-PAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGL 270 (310)
T ss_dssp TSS-CCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCC
T ss_pred hcC-CCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhh
Confidence 445 66777777776653 2222 23566777777777777666533221 01123677777777765 55666554
Q ss_pred ccccccceeeEeccccCCCCchhhcCCCCCcEEEEecCc
Q 045237 694 RAMTKLESLIINPCAYLKKLPEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 694 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~c~ 732 (758)
+++|+.|++++|. +..+|. +..+++|+.|++++|+
T Consensus 271 --~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 271 --PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp --CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred --cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 3677888887776 455554 5667778888887776
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=7.1e-15 Score=152.54 Aligned_cols=170 Identities=21% Similarity=0.251 Sum_probs=104.3
Q ss_pred ccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEc
Q 045237 451 KKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNF 530 (758)
Q Consensus 451 ~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 530 (758)
..+++|+.|++++|.+..+|. ++.+++|++|++++|.++.+|. +.++++|++|++++|.+..+|. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 345667777777777776654 7777778888888777777765 7777788888888777777654 667777777777
Q ss_pred CCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcc
Q 045237 531 GCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQ 610 (758)
Q Consensus 531 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 610 (758)
+++. ... ...+..+++|+.|++++|. . ..+ ..+..+++|+.|++++
T Consensus 120 ~~n~---------------------i~~---~~~l~~l~~L~~L~l~~n~--l-~~~-~~l~~l~~L~~L~L~~------ 165 (291)
T 1h6t_A 120 EHNG---------------------ISD---INGLVHLPQLESLYLGNNK--I-TDI-TVLSRLTKLDTLSLED------ 165 (291)
T ss_dssp TTSC---------------------CCC---CGGGGGCTTCCEEECCSSC--C-CCC-GGGGGCTTCSEEECCS------
T ss_pred CCCc---------------------CCC---ChhhcCCCCCCEEEccCCc--C-Ccc-hhhccCCCCCEEEccC------
Confidence 6521 100 1123344455555555542 1 111 2344555555555555
Q ss_pred cccc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCC
Q 045237 611 LSQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSG 661 (758)
Q Consensus 611 ~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 661 (758)
+.+ ++.+..+ ++|+.|++++|.+.. + +.+..+++|+.|++++|.+..
T Consensus 166 -N~l~~~~~l~~l-~~L~~L~L~~N~i~~-l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 166 -NQISDIVPLAGL-TKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -SCCCCCGGGTTC-TTCCEEECCSSCCCB-C-GGGTTCTTCSEEEEEEEEEEC
T ss_pred -CccccchhhcCC-CccCEEECCCCcCCC-C-hhhccCCCCCEEECcCCcccC
Confidence 222 2224445 777777777777643 2 347777778888887776654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=9.3e-15 Score=166.44 Aligned_cols=122 Identities=19% Similarity=0.157 Sum_probs=60.8
Q ss_pred cCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcC
Q 045237 452 KFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFG 531 (758)
Q Consensus 452 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 531 (758)
.++.|+.|++++|.+..+| .++.|++|++|+|++|.+..+|. +.++++|+.|+|++|.+..+| .+..+++|++|+++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 4455555566665555554 35555666666666665555554 555666666666666555544 35555555555554
Q ss_pred CCC-CCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEec
Q 045237 532 CIT-LPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGD 579 (758)
Q Consensus 532 ~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 579 (758)
++. ..++.+..+++|+.|++.+|.... ...++.+++|+.|++++|
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCC---CGGGGSCTTCSEEECCSS
T ss_pred CCCCCCCccccCCCccCEEECCCCccCC---chhhcccCCCCEEECcCC
Confidence 421 111223334444444443333222 133445555555555554
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=4.5e-14 Score=143.18 Aligned_cols=174 Identities=22% Similarity=0.268 Sum_probs=107.3
Q ss_pred CeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcC
Q 045237 454 KLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFG 531 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~ 531 (758)
...+.++++++.++.+|..+. .+|++|++++|.++.++. .+.++++|++|+|++|.+..++.. +.++++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 346778899888888887765 588999999999886654 578899999999999988877544 6777888888776
Q ss_pred CCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCccc
Q 045237 532 CITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQL 611 (758)
Q Consensus 532 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~ 611 (758)
++ .... ..+..+..+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 92 ~n---------------------~l~~-~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~------- 140 (251)
T 3m19_A 92 NN---------------------QLAS-LPLGVFDHLTQLDKLYLGGNQ--LKSLPSGVFDRLTKLKELRLNT------- 140 (251)
T ss_dssp TS---------------------CCCC-CCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-------
T ss_pred CC---------------------cccc-cChhHhcccCCCCEEEcCCCc--CCCcChhHhccCCcccEEECcC-------
Confidence 53 1111 122334455566666666551 1111112233444444444444
Q ss_pred ccc--cC--CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCC
Q 045237 612 SQM--IL--SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSG 661 (758)
Q Consensus 612 ~~l--lp--~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 661 (758)
+.+ +| .+..+ ++|+.|+|++|.+....+..+..+++|+.|++++|.+..
T Consensus 141 N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 141 NQLQSIPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCccCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 222 22 34455 666666666666655444556666666666666665543
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=3.1e-14 Score=160.38 Aligned_cols=177 Identities=18% Similarity=0.201 Sum_probs=124.4
Q ss_pred eeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCC-
Q 045237 455 LLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCI- 533 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~- 533 (758)
+|+.|++++|.++.+|..+. ++|++|+|++|.++.+| ..+++|++|++++|.+..+|. +.+ +|++|+++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 78899999999888887764 78999999999999888 567899999999998888887 655 8899988873
Q ss_pred -CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccc
Q 045237 534 -TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLS 612 (758)
Q Consensus 534 -~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~ 612 (758)
..+|. .+++|+.|++.++.... +|. .+++|+.|++++|. ...+|. +. ++|+.|+|++ |
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~---L~~lp~-l~--~~L~~L~Ls~-------N 190 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQ---LTFLPE-LP--ESLEALDVST-------N 190 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC---CSCCCC-CC--TTCCEEECCS-------S
T ss_pred CCCCCC---cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCC---CCCcch-hh--CCCCEEECcC-------C
Confidence 23444 56778888777665533 443 46778888888772 223444 43 6777777777 4
Q ss_pred cc--cCCcCCCCCCc-------cEEEEeeccCCCCCcccccCCCCCceEEEeccccCCcee
Q 045237 613 QM--ILSEYQFPPSL-------TQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKL 664 (758)
Q Consensus 613 ~l--lp~~~~l~~~L-------~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 664 (758)
.+ +|. ++.+| +.|+|++|.+. .+|..+..+++|+.|+|++|.+.+..+
T Consensus 191 ~L~~lp~---~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 191 LLESLPA---VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCSSCCC---CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred CCCchhh---HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 33 332 21345 77777777765 456666667777777777777665443
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=1.2e-14 Score=156.14 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=36.5
Q ss_pred cceEEeccccCCcchhhhhHHHhccCC-eeEEEEcCCCCCCCC-CccccCc-----ccccEEeccCCCCcccCcc-----
Q 045237 428 LHSLQNFALESDHSALLDCENICKKFK-LLRVLNMGSLVLDQF-PSGIENL-----FLLRCLKLDVPSLKSLPSS----- 495 (758)
Q Consensus 428 Lr~L~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~l~~l-p~~i~~l-----~~Lr~L~L~~~~i~~lp~~----- 495 (758)
++.|.+.++.........+...|..++ +|+.|+|++|.++.. +..++.+ ++|++|+|++|.++..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 555555444433211111123444444 455555555544422 2333332 4555555555554422211
Q ss_pred ccCC-CCCcEEEccCCcCccc
Q 045237 496 LCNL-LNLQTLDMPSSYIDHT 515 (758)
Q Consensus 496 i~~L-~~L~~L~L~~~~l~~l 515 (758)
+..+ ++|++|++++|.+...
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGS
T ss_pred HHhCCCCccEEECcCCcCCcH
Confidence 2222 4555555555544443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=4.4e-14 Score=160.92 Aligned_cols=187 Identities=19% Similarity=0.176 Sum_probs=145.6
Q ss_pred eEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCC-C
Q 045237 456 LRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCI-T 534 (758)
Q Consensus 456 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~-~ 534 (758)
+..+.++.+.+..++. +..|.+|++|++++|.+..+| .+..|++|+.|+|++|.+..+|. +..+++|++|+++++ .
T Consensus 23 l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 4445566666665433 578899999999999999987 68999999999999999999987 999999999999873 2
Q ss_pred CCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc
Q 045237 535 LPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM 614 (758)
Q Consensus 535 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l 614 (758)
..++.+..+++|+.|++.++.... +..+..+++|+.|++++|. . ..+ ..+..+++|+.|+|++ +.+
T Consensus 100 ~~l~~l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~N~--l-~~l-~~l~~l~~L~~L~Ls~-------N~l 165 (605)
T 1m9s_A 100 KDLSSLKDLKKLKSLSLEHNGISD---INGLVHLPQLESLYLGNNK--I-TDI-TVLSRLTKLDTLSLED-------NQI 165 (605)
T ss_dssp CCCTTSTTCTTCCEEECTTSCCCC---CGGGGGCTTCSEEECCSSC--C-CCC-GGGGSCTTCSEEECCS-------SCC
T ss_pred CCChhhccCCCCCEEEecCCCCCC---CccccCCCccCEEECCCCc--c-CCc-hhhcccCCCCEEECcC-------CcC
Confidence 234468889999999988887643 4568889999999999883 2 223 5677888899999888 444
Q ss_pred --cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCc
Q 045237 615 --ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGR 662 (758)
Q Consensus 615 --lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 662 (758)
++.+..+ ++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+.+.
T Consensus 166 ~~~~~l~~l-~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVPLAGL-TKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGGGTTC-TTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred CCchhhccC-CCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 2236666 888899998888764 3 5688888899998888876553
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=1.4e-13 Score=139.47 Aligned_cols=172 Identities=20% Similarity=0.221 Sum_probs=114.6
Q ss_pred ccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccch-hhcccccCcEEEcCCCCCCCCCCCccccCccccccccc
Q 045237 477 FLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFISAL 555 (758)
Q Consensus 477 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~ 555 (758)
...+.++++++.++.+|..+. .+|+.|+|++|.+..++. .+.++++|++|+++++ .
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n---------------------~ 70 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN---------------------Q 70 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS---------------------C
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC---------------------c
Confidence 467899999999999998876 699999999999888754 4777777777777653 1
Q ss_pred CCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cC--CcCCCCCCccEEEEe
Q 045237 556 HPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--IL--SEYQFPPSLTQLSLS 631 (758)
Q Consensus 556 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp--~~~~l~~~L~~L~L~ 631 (758)
... ..+..+..+++|+.|++++|. .....+..+..+++|+.|++++ +.+ +| .+..+ ++|+.|+|+
T Consensus 71 l~~-~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~-------N~l~~~~~~~~~~l-~~L~~L~Ls 139 (251)
T 3m19_A 71 LQT-LSAGVFDDLTELGTLGLANNQ--LASLPLGVFDHLTQLDKLYLGG-------NQLKSLPSGVFDRL-TKLKELRLN 139 (251)
T ss_dssp CCC-CCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECCS-------SCCCCCCTTTTTTC-TTCCEEECC
T ss_pred CCc-cCHhHhccCCcCCEEECCCCc--ccccChhHhcccCCCCEEEcCC-------CcCCCcChhHhccC-CcccEEECc
Confidence 111 234557788899999999882 3333334456667777777766 333 33 34555 667777777
Q ss_pred eccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCC
Q 045237 632 NTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMF 684 (758)
Q Consensus 632 ~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~ 684 (758)
+|.+....+..++.+++|++|+|++|.+.+..+.. +..+++|+.|+|++|+
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA--FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSCC
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCc
Confidence 77665544445666667777777666665433211 4456666666666654
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=1.4e-13 Score=142.76 Aligned_cols=181 Identities=22% Similarity=0.208 Sum_probs=142.9
Q ss_pred EEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCCCCCC
Q 045237 459 LNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCITLPAP 538 (758)
Q Consensus 459 L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 538 (758)
+.+....+.... .+..+++|++|++++|.++.+| .+..+++|++|++++|.+..++. +.++++|++|+++++.
T Consensus 29 ~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~---- 101 (291)
T 1h6t_A 29 DNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK---- 101 (291)
T ss_dssp HHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC----
T ss_pred HHhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc----
Confidence 345555554432 3567899999999999999887 58899999999999999998877 8888888888887531
Q ss_pred CCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cC
Q 045237 539 PENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--IL 616 (758)
Q Consensus 539 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp 616 (758)
. ..+..++.+++|+.|++++|. ...+ ..+..+++|+.|++++ +.+ ++
T Consensus 102 -----------------l---~~~~~l~~l~~L~~L~L~~n~---i~~~-~~l~~l~~L~~L~l~~-------n~l~~~~ 150 (291)
T 1h6t_A 102 -----------------V---KDLSSLKDLKKLKSLSLEHNG---ISDI-NGLVHLPQLESLYLGN-------NKITDIT 150 (291)
T ss_dssp -----------------C---CCGGGGTTCTTCCEEECTTSC---CCCC-GGGGGCTTCCEEECCS-------SCCCCCG
T ss_pred -----------------C---CCChhhccCCCCCEEECCCCc---CCCC-hhhcCCCCCCEEEccC-------CcCCcch
Confidence 1 012347789999999999984 2223 4678899999999998 444 45
Q ss_pred CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCC
Q 045237 617 SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMF 684 (758)
Q Consensus 617 ~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~ 684 (758)
.+..+ ++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.. .+..+++|+.|++++|+
T Consensus 151 ~l~~l-~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~----~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 151 VLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG----GGTTCTTCSEEEEEEEE
T ss_pred hhccC-CCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh----hhccCCCCCEEECcCCc
Confidence 67777 999999999999865433 899999999999999887632 16789999999999986
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=7.9e-14 Score=135.75 Aligned_cols=150 Identities=13% Similarity=0.190 Sum_probs=119.6
Q ss_pred CCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc--cCCcCCCCCCccEEEEeeccCCCCCcccc
Q 045237 566 GRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTL 643 (758)
Q Consensus 566 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l 643 (758)
+.+++|+.|+++++ ....++ .+..+++|+.|++++ +.+ ++.+..+ ++|++|++++|.+.+..+..+
T Consensus 41 ~~l~~L~~L~l~~n---~i~~l~-~l~~l~~L~~L~l~~-------n~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 41 AQMNSLTYITLANI---NVTDLT-GIEYAHNIKDLTINN-------IHATNYNPISGL-SNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHHTCCEEEEESS---CCSCCT-TGGGCTTCSEEEEES-------CCCSCCGGGTTC-TTCCEEEEECTTCBGGGSCCC
T ss_pred hhcCCccEEeccCC---CccChH-HHhcCCCCCEEEccC-------CCCCcchhhhcC-CCCCEEEeECCccCcccChhh
Confidence 45677778888776 233445 577778888888877 333 3366677 999999999999877678889
Q ss_pred cCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECcccccccceeeEeccccCCCCchhhcCCCCC
Q 045237 644 EKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLPEELWRIESF 723 (758)
Q Consensus 644 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~sL 723 (758)
+.+++|++|++++|.+.+..+.. +..+++|+.|++++|..+..+| .+..+++|+.|++++|. +..+| .+..+++|
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~--l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L 183 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTK--INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKL 183 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHH--HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSC
T ss_pred cCCCCCCEEEecCCccCcHhHHH--HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCC
Confidence 99999999999999887655543 5688999999999997677777 68889999999999998 56676 68899999
Q ss_pred cEEEEecCc
Q 045237 724 RKLELHWPQ 732 (758)
Q Consensus 724 ~~L~l~~c~ 732 (758)
+.|++++++
T Consensus 184 ~~L~l~~N~ 192 (197)
T 4ezg_A 184 NQLYAFSQT 192 (197)
T ss_dssp CEEEECBC-
T ss_pred CEEEeeCcc
Confidence 999999987
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=2.4e-13 Score=132.30 Aligned_cols=151 Identities=16% Similarity=0.176 Sum_probs=77.9
Q ss_pred cCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCCCCCCCCCccccCccccccc
Q 045237 474 ENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCITLPAPPENYCSSLKNLIFIS 553 (758)
Q Consensus 474 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~ 553 (758)
+.+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|+++++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n-------------------- 98 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGK-------------------- 98 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECT--------------------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECC--------------------
Confidence 44556666666666666555 4556666666666666544433 3444555555554432
Q ss_pred ccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCccccc-c--cCCcCCCCCCccEEEE
Q 045237 554 ALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQ-M--ILSEYQFPPSLTQLSL 630 (758)
Q Consensus 554 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~-l--lp~~~~l~~~L~~L~L 630 (758)
.... ..+..++.+++|+.|++++| ......+..+..+++|+.|++++ +. + +|.+..+ ++|+.|++
T Consensus 99 -~l~~-~~~~~l~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~-------n~~i~~~~~l~~l-~~L~~L~l 166 (197)
T 4ezg_A 99 -DVTS-DKIPNLSGLTSLTLLDISHS--AHDDSILTKINTLPKVNSIDLSY-------NGAITDIMPLKTL-PELKSLNI 166 (197)
T ss_dssp -TCBG-GGSCCCTTCTTCCEEECCSS--BCBGGGHHHHTTCSSCCEEECCS-------CTBCCCCGGGGGC-SSCCEEEC
T ss_pred -ccCc-ccChhhcCCCCCCEEEecCC--ccCcHhHHHHhhCCCCCEEEccC-------CCCccccHhhcCC-CCCCEEEC
Confidence 1111 12333444555555555555 23333444455555555555544 22 1 2334444 67777777
Q ss_pred eeccCCCCCcccccCCCCCceEEEeccccC
Q 045237 631 SNTELKEDPMPTLEKLPHLLVLKLKQNSYS 660 (758)
Q Consensus 631 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~ 660 (758)
++|.+.+ ++ .+..+++|+.|++++|.+.
T Consensus 167 ~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 167 QFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 7777643 22 6667777777777776653
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=3e-13 Score=132.81 Aligned_cols=119 Identities=21% Similarity=0.269 Sum_probs=61.2
Q ss_pred EEEcCCCCCCCCCccccCcccccEEeccCCCCcccCcc-ccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCCC--
Q 045237 458 VLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSS-LCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGCI-- 533 (758)
Q Consensus 458 ~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~-- 533 (758)
.++.+++.++.+|..+ .++|++|++++|.++.+|.. +.++++|++|++++|.+..+|.. +..+++|++|+++++
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4455555555555443 23666666666666655543 45666666666666666665543 355666666666542
Q ss_pred CCCCCC-CCccccCcccccccccCCCCCCccccCCCCCCCeEEEEec
Q 045237 534 TLPAPP-ENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGD 579 (758)
Q Consensus 534 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 579 (758)
..+|.. +..+++|+.|++.++.... ..+..+..+++|+.|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCC
Confidence 112221 3344444444444433322 22233455566666666655
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=8.6e-14 Score=156.74 Aligned_cols=184 Identities=19% Similarity=0.172 Sum_probs=132.4
Q ss_pred ccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEE
Q 045237 427 YLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLD 506 (758)
Q Consensus 427 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 506 (758)
+++.|.+.++.... ++..+ +++|+.|+|++|.++.+| +.+++|++|++++|.++.+|. +.+ +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~----lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS----LPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC----CCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc----cCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 45666665555432 11112 367888888888888888 456788888888888888887 655 888888
Q ss_pred ccCCcCcccchhhcccccCcEEEcCCC--CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhh
Q 045237 507 MPSSYIDHTPEDIWNMHKLMHLNFGCI--TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQ 584 (758)
Q Consensus 507 L~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 584 (758)
|++|.+..+|. .+++|++|+++++ ..+|. .+++|+.|++.+|.... +|. ++ ++|+.|++++|. .
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~---L 192 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL---L 192 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC---C
T ss_pred CCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC---C
Confidence 88888888887 6788888888773 23443 56788888877776543 555 55 889999999883 3
Q ss_pred hhHHHHhhccCCC-------ceEEeeecCCCcccccc--cC-CcCCCCCCccEEEEeeccCCCCCcccccCCCC
Q 045237 585 SGLSKSLRELLKL-------ESLKLVNKSKGWQLSQM--IL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPH 648 (758)
Q Consensus 585 ~~l~~~l~~~~~L-------~~L~L~~~~~~~~~~~l--lp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~ 648 (758)
..+|. +.. +| +.|+|++ |.+ +| .+..+ ++|+.|+|++|.+.+..|..+..++.
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~-------N~l~~lp~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCRE-------NRITHIPENILSL-DPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SSCCC-CC----------CCEEEECCS-------SCCCCCCGGGGGS-CTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred Cchhh-HHH--hhhcccccceEEecCC-------CcceecCHHHhcC-CCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 35554 433 66 9999998 556 78 78787 99999999999998888877766543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1.1e-13 Score=141.19 Aligned_cols=168 Identities=17% Similarity=0.166 Sum_probs=94.8
Q ss_pred CCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCC
Q 045237 453 FKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGC 532 (758)
Q Consensus 453 l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 532 (758)
+..+..++++++.++.++ .+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|. +.++++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 334555566666666555 4566666777777776666666 56666777777777766666665 66666666666665
Q ss_pred C--CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcc
Q 045237 533 I--TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQ 610 (758)
Q Consensus 533 ~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 610 (758)
+ ..+|. +.. ++|+.|++.++.... +..++.+++|+.|++++|. ...
T Consensus 95 N~l~~l~~-~~~-~~L~~L~L~~N~l~~---~~~l~~l~~L~~L~Ls~N~---i~~------------------------ 142 (263)
T 1xeu_A 95 NRLKNLNG-IPS-ACLSRLFLDNNELRD---TDSLIHLKNLEILSIRNNK---LKS------------------------ 142 (263)
T ss_dssp SCCSCCTT-CCC-SSCCEEECCSSCCSB---SGGGTTCTTCCEEECTTSC---CCB------------------------
T ss_pred CccCCcCc-ccc-CcccEEEccCCccCC---ChhhcCcccccEEECCCCc---CCC------------------------
Confidence 2 11111 111 444444444443322 2235556666666666552 111
Q ss_pred cccccCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCc
Q 045237 611 LSQMILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGR 662 (758)
Q Consensus 611 ~~~llp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 662 (758)
+|.+..+ ++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 143 ----~~~l~~l-~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 ----IVMLGFL-SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ----CGGGGGC-TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ----ChHHccC-CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2223334 6666666666665443 5566777777777777765544
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=2.2e-13 Score=159.09 Aligned_cols=123 Identities=24% Similarity=0.271 Sum_probs=85.1
Q ss_pred hhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhccccc
Q 045237 445 DCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHK 524 (758)
Q Consensus 445 ~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~ 524 (758)
.++..|..++.|++|+|++|.+..+|..+.++++|++|+|++|.|+.+|..+++|++|++|+|++|.+..+|..+++|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 45667778888888888888888888778888888888888888888888888888888888888888888888888888
Q ss_pred CcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhh
Q 045237 525 LMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLR 592 (758)
Q Consensus 525 L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~ 592 (758)
|++|+++++ .. . .+|..++.+++|+.|++++| ...+.+|..+.
T Consensus 295 L~~L~L~~N---------------------~l-~-~lp~~~~~l~~L~~L~L~~N--~l~~~~p~~~~ 337 (727)
T 4b8c_D 295 LKYFYFFDN---------------------MV-T-TLPWEFGNLCNLQFLGVEGN--PLEKQFLKILT 337 (727)
T ss_dssp CSEEECCSS---------------------CC-C-CCCSSTTSCTTCCCEECTTS--CCCSHHHHHHH
T ss_pred CCEEECCCC---------------------CC-C-ccChhhhcCCCccEEeCCCC--ccCCCChHHHh
Confidence 888877653 11 1 34555666666666666666 34444444443
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.2e-12 Score=128.64 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=42.6
Q ss_pred ccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCC
Q 045237 479 LRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGC 532 (758)
Q Consensus 479 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 532 (758)
-+.++.+++.++.+|..+ .++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 61 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG 61 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCC
Confidence 467888888899998766 46999999999999888765 57788888888875
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=1.9e-15 Score=171.05 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=95.1
Q ss_pred CCceEEeeecCCCcccccc--cCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCc
Q 045237 596 KLESLKLVNKSKGWQLSQM--ILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFP 673 (758)
Q Consensus 596 ~L~~L~L~~~~~~~~~~~l--lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~ 673 (758)
.|+.|++++ +.+ +|.+..+ ++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+.+ .+ . ++.++
T Consensus 442 ~L~~L~Ls~-------n~l~~lp~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~-l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAH-------KDLTVLCHLEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--G-VANLP 508 (567)
T ss_dssp TCSEEECTT-------SCCSSCCCGGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--G-GTTCS
T ss_pred CceEEEecC-------CCCCCCcCcccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--c-cCCCC
Confidence 577888877 444 5667777 89999999999987 778899999999999999999887 33 2 78899
Q ss_pred cccEEeeccCCCcCce--EECcccccccceeeEeccccCCCCch----hhcCCCCCcEEEE
Q 045237 674 KLKILHLKSMFWLEEW--TMGARAMTKLESLIINPCAYLKKLPE----ELWRIESFRKLEL 728 (758)
Q Consensus 674 ~L~~L~L~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~sL~~L~l 728 (758)
+|+.|+|++|. ++.+ |..++.+++|+.|++++|+. ..+|+ .+..+++|+.|++
T Consensus 509 ~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 99999999986 6666 78889999999999999984 44443 2345889998864
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=6.3e-15 Score=166.84 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=59.4
Q ss_pred CCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceEECccccccccee
Q 045237 623 PSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWTMGARAMTKLESL 702 (758)
Q Consensus 623 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L 702 (758)
..|+.|+|++|.+++ +|. ++.+++|+.|+|++|.+. ..|.. ++.+++|+.|+|++|. ++.+| .++.+++|+.|
T Consensus 441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~--~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L 513 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPA--LAALRCLEVLQASDNA-LENVD-GVANLPRLQEL 513 (567)
T ss_dssp TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGG--GGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEE
T ss_pred cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchh--hhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEE
Confidence 346666666666543 333 666666666666666555 22322 4556666666666654 45555 56666666666
Q ss_pred eEeccccCCCC--chhhcCCCCCcEEEEecCc
Q 045237 703 IINPCAYLKKL--PEELWRIESFRKLELHWPQ 732 (758)
Q Consensus 703 ~l~~c~~l~~l--p~~l~~l~sL~~L~l~~c~ 732 (758)
++++|. +..+ |..+..+++|+.|++++|+
T Consensus 514 ~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 514 LLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp ECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred ECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 666665 3333 5666666666666666665
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=7e-12 Score=124.10 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=63.2
Q ss_pred EEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCccc-chhhcccccCcEEEcCCC-
Q 045237 457 RVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHT-PEDIWNMHKLMHLNFGCI- 533 (758)
Q Consensus 457 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~- 533 (758)
+.++++++.++.+|..+. .+|+.|++++|.++.+|. .+.++++|++|+|++|.+..+ |..+.++++|++|+++++
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345666666666665543 466666666666665554 456666666666666666555 445666666666666542
Q ss_pred -CCCCCC-CCccccCcccccccccCCCCCCccccCCCCCCCeEEEEec
Q 045237 534 -TLPAPP-ENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGD 579 (758)
Q Consensus 534 -~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 579 (758)
..+|.. +..+++|+.|++.++.... ..+..+..+++|+.|++++|
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCC
Confidence 122222 2334444444444433322 23334444455555555544
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=3.9e-12 Score=129.70 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=103.6
Q ss_pred HhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEE
Q 045237 449 ICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHL 528 (758)
Q Consensus 449 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 528 (758)
.+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|. +.++++|++|++++|.+..+|.... ++|++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 3567788888888888888877 67888888888888888888876 8888888888888888888775433 888888
Q ss_pred EcCCCC-CCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeee
Q 045237 529 NFGCIT-LPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVN 604 (758)
Q Consensus 529 ~l~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 604 (758)
+++++. ...+.+..+++|+.|++.++.... . ..++.+++|+.|++++|. ..+ + ..+..+++|+.|++++
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~L~~L~L~~N~--i~~-~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKS--I-VMLGFLSKLEVLDLHGNE--ITN-T-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTSCCCB--C-GGGGGCTTCCEEECTTSC--CCB-C-TTSTTCCCCCEEEEEE
T ss_pred EccCCccCCChhhcCcccccEEECCCCcCCC--C-hHHccCCCCCEEECCCCc--Ccc-h-HHhccCCCCCEEeCCC
Confidence 887621 122357778888888887776544 2 367788888888888873 221 1 3344444444444444
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=1.1e-11 Score=123.53 Aligned_cols=151 Identities=21% Similarity=0.270 Sum_probs=98.1
Q ss_pred eEEEEcCCCCCCCCCccccCcccccEEeccCCCCccc-CccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCCC
Q 045237 456 LRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSL-PSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGCI 533 (758)
Q Consensus 456 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~ 533 (758)
.+.++.+++.+..+|..+. ++|++|+|++|.++.+ |..+.++++|++|+|++|.+..+|.. +..+++|++|+++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3467888888888887664 7888899988888866 56678888888898888888887754 566777777777653
Q ss_pred CCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCccccc
Q 045237 534 TLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQ 613 (758)
Q Consensus 534 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~ 613 (758)
.... ..+..+..+++|+.|++++|. ...+|.
T Consensus 99 ---------------------~l~~-l~~~~~~~l~~L~~L~Ls~N~---l~~lp~------------------------ 129 (229)
T 3e6j_A 99 ---------------------QLTV-LPSAVFDRLVHLKELFMCCNK---LTELPR------------------------ 129 (229)
T ss_dssp ---------------------CCCC-CCTTTTTTCTTCCEEECCSSC---CCSCCT------------------------
T ss_pred ---------------------cCCc-cChhHhCcchhhCeEeccCCc---ccccCc------------------------
Confidence 1111 122334566677777777661 222333
Q ss_pred ccCCcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCC
Q 045237 614 MILSEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSG 661 (758)
Q Consensus 614 llp~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 661 (758)
.+..+ ++|+.|+|++|.+....+..+..+++|+.|++++|.+..
T Consensus 130 ---~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 130 ---GIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp ---TGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ---ccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 33333 566666666666654444556667777777777666543
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=2.8e-12 Score=137.31 Aligned_cols=168 Identities=20% Similarity=0.233 Sum_probs=107.6
Q ss_pred EEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCcc-cc-CCCCCcEEEccCCcCcccch-hhcccccCcEEEcCCC
Q 045237 457 RVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSS-LC-NLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHLNFGCI 533 (758)
Q Consensus 457 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 533 (758)
++++++++.++.+|..+.. .+++|+|++|.++.+|.. +. ++++|++|+|++|.+..+|. .+.++++|++|+++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5788999989988876653 689999999999987765 44 89999999999999988864 4888888888888763
Q ss_pred --CCCCC-CCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcc
Q 045237 534 --TLPAP-PENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQ 610 (758)
Q Consensus 534 --~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 610 (758)
..++. .+..+++|+.|++.++.... ..+..+..+++|+.|++++|. ...
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~---l~~------------------------ 150 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQ---ISR------------------------ 150 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSC---CCS------------------------
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCc---CCe------------------------
Confidence 12222 24445555555544444332 233444445555555555441 111
Q ss_pred cccccC-C-c---CCCCCCccEEEEeeccCCCCCcccccCCCC--CceEEEecccc
Q 045237 611 LSQMIL-S-E---YQFPPSLTQLSLSNTELKEDPMPTLEKLPH--LLVLKLKQNSY 659 (758)
Q Consensus 611 ~~~llp-~-~---~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~--L~~L~L~~n~~ 659 (758)
+| . + ..+ ++|+.|+|++|.+....+..+..++. |+.|+|++|.+
T Consensus 151 ----l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 151 ----FPVELIKDGNKL-PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----CCGGGTC----C-TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ----eCHHHhcCcccC-CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 33 1 1 234 67777777777766555556666665 36777776654
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=9.4e-12 Score=123.18 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=44.2
Q ss_pred EEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCc--cccCCCCCcEEEccCCcCcccch-hhcccccCcEEEcCC
Q 045237 457 RVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPS--SLCNLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHLNFGC 532 (758)
Q Consensus 457 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~ 532 (758)
+.++++++.++.+|..+.. .+++|++++|.++.++. .+.++++|++|+|++|.+..++. .+.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3566666666666655432 45666666666665532 25666666666666666666544 455666666666554
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=7.2e-12 Score=118.32 Aligned_cols=127 Identities=20% Similarity=0.177 Sum_probs=92.5
Q ss_pred ccCCeeEEEEcCCCCCC--CCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcc-cchhhcccccCcE
Q 045237 451 KKFKLLRVLNMGSLVLD--QFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDH-TPEDIWNMHKLMH 527 (758)
Q Consensus 451 ~~l~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~i~~l~~L~~ 527 (758)
...+.|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+.++++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 44578999999999988 8888889999999999999998887 788899999999999998877 6777777899999
Q ss_pred EEcCCCC--CCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHH----HHhhccCCCceEE
Q 045237 528 LNFGCIT--LPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLS----KSLRELLKLESLK 601 (758)
Q Consensus 528 L~l~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~----~~l~~~~~L~~L~ 601 (758)
|+++++. .+| .+..++.+++|+.|++++|. . ..++ ..+..+++|+.|+
T Consensus 100 L~Ls~N~l~~~~-----------------------~~~~l~~l~~L~~L~l~~N~--l-~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 100 LNLSGNKLKDIS-----------------------TLEPLKKLECLKSLDLFNCE--V-TNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp EECBSSSCCSSG-----------------------GGGGGSSCSCCCEEECCSSG--G-GTSTTHHHHHHTTCSSCCEET
T ss_pred EeccCCccCcch-----------------------hHHHHhcCCCCCEEEeeCCc--C-cchHHHHHHHHHhCccCcEec
Confidence 9887631 111 11345556666666666652 2 2222 2555666666666
Q ss_pred eee
Q 045237 602 LVN 604 (758)
Q Consensus 602 L~~ 604 (758)
++.
T Consensus 154 l~~ 156 (168)
T 2ell_A 154 GYD 156 (168)
T ss_dssp TEE
T ss_pred CCC
Confidence 665
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=2.3e-11 Score=120.38 Aligned_cols=126 Identities=16% Similarity=0.199 Sum_probs=83.3
Q ss_pred CeeEEEEcCCCCCCCCCc-cccCcccccEEeccCCCCccc-CccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEc
Q 045237 454 KLLRVLNMGSLVLDQFPS-GIENLFLLRCLKLDVPSLKSL-PSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNF 530 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 530 (758)
+.|+.|++++|.++.+|. .+..+++|++|+|++|.++.+ |..+.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 456677777777665543 566677777777777776654 55667777777777777777666655 456777777776
Q ss_pred CCC--C-CCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecC
Q 045237 531 GCI--T-LPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDL 580 (758)
Q Consensus 531 ~~~--~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 580 (758)
+++ . ..|..+..+++|+.|++.++.... ..+..+..+++|+.|++++|.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCC
Confidence 652 1 223456667777777766665544 344557788888888888874
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=1.1e-11 Score=123.57 Aligned_cols=129 Identities=22% Similarity=0.245 Sum_probs=89.5
Q ss_pred CCCceEEeeecCCCcccccccC-CcCCCCCCccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCc
Q 045237 595 LKLESLKLVNKSKGWQLSQMIL-SEYQFPPSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFP 673 (758)
Q Consensus 595 ~~L~~L~L~~~~~~~~~~~llp-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~ 673 (758)
++|+.|+++++. +..+.| .+..+ ++|+.|+|++|.+....+..+..+++|+.|+|++|.+.+..+.. +..++
T Consensus 40 ~~L~~L~Ls~n~----i~~~~~~~~~~l-~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQ----ITKLEPGVFDSL-INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV--FDRLV 112 (229)
T ss_dssp TTCSEEECCSSC----CCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCT
T ss_pred CCCCEEEcCCCc----cCccCHHHhhCc-cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH--hCcch
Confidence 455556655511 011134 56666 78888888888876555566778888888888888776543222 46678
Q ss_pred cccEEeeccCCCcCceEECcccccccceeeEeccccCCCCc-hhhcCCCCCcEEEEecCc
Q 045237 674 KLKILHLKSMFWLEEWTMGARAMTKLESLIINPCAYLKKLP-EELWRIESFRKLELHWPQ 732 (758)
Q Consensus 674 ~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~sL~~L~l~~c~ 732 (758)
+|+.|+|++|. +..+|..+..+++|+.|++++|. +..+| ..+..+++|+.|++.+||
T Consensus 113 ~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 113 HLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 88888888875 66787777888888888888886 55555 457778888888888776
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=5.7e-12 Score=116.41 Aligned_cols=129 Identities=17% Similarity=0.156 Sum_probs=95.3
Q ss_pred ccCCeeEEEEcCCCCCC--CCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcc-cchhhcccccCcE
Q 045237 451 KKFKLLRVLNMGSLVLD--QFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDH-TPEDIWNMHKLMH 527 (758)
Q Consensus 451 ~~l~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~i~~l~~L~~ 527 (758)
...++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++++++|++|++++|.+.. +|..+..+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34577999999999988 8888889999999999999999887 678899999999999998887 7777778899999
Q ss_pred EEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHH---HHhhccCCCceEEee
Q 045237 528 LNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLS---KSLRELLKLESLKLV 603 (758)
Q Consensus 528 L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~---~~l~~~~~L~~L~L~ 603 (758)
|+++++. + . .+ ..+..++.+++|+.|++++|. .....+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~-i----~------~~----------~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-I----K------DL----------STIEPLKKLENLKSLDLFNCE--VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-C----C------SH----------HHHGGGGGCTTCCEEECTTCG--GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCc-C----C------Ch----------HHHHHHhhCCCCCEEeCcCCc--ccchHHHHHHHHHHCCCcccccCC
Confidence 9887641 0 0 00 112455667777777777762 222222 356677777777654
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=4.5e-11 Score=118.28 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=88.7
Q ss_pred eeEEEEcCCCCCCCCC--ccccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCcccchh-hcccccCcEEEc
Q 045237 455 LLRVLNMGSLVLDQFP--SGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNF 530 (758)
Q Consensus 455 ~Lr~L~L~~~~l~~lp--~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 530 (758)
.++.|+|++|.++.++ ..+..+++|++|+|++|.++.+|. .+.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 4567888888877653 346778888888888888886665 577888888888888877777654 777888888887
Q ss_pred CCC--C-CCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecC
Q 045237 531 GCI--T-LPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDL 580 (758)
Q Consensus 531 ~~~--~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 580 (758)
+++ . ..|..+..+++|+.|++.++.... ..|..+..+++|+.|++++|.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcC
Confidence 762 1 224456667777777766665544 446677778888888887774
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=2.1e-11 Score=115.18 Aligned_cols=126 Identities=18% Similarity=0.094 Sum_probs=91.7
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcc-cCccccCCCCCcE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKS-LPSSLCNLLNLQT 504 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~ 504 (758)
++++.|.+.++.... ...+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+.++++|++
T Consensus 24 ~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 556777776666531 12344567888899999999988877 778888999999999998886 7777777999999
Q ss_pred EEccCCcCcccc--hhhcccccCcEEEcCCC--CCCCC----CCCccccCccccccccc
Q 045237 505 LDMPSSYIDHTP--EDIWNMHKLMHLNFGCI--TLPAP----PENYCSSLKNLIFISAL 555 (758)
Q Consensus 505 L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~--~~~~~----~~~~l~~L~~L~l~~~~ 555 (758)
|++++|.+..+| ..+..+++|++|+++++ ...|. .+..+++|+.|++.++.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 999999888876 67888888888888763 22333 34455555555555543
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=3.7e-11 Score=126.88 Aligned_cols=278 Identities=13% Similarity=0.043 Sum_probs=164.9
Q ss_pred cccceEEeccccCCcchhhhhHHHhcc-CCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCc-cccC-----
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKK-FKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPS-SLCN----- 498 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~----- 498 (758)
.+++.|.+.+.-.. .. -..+.. +++|++|||++|.+......-+.++.++++.+..+. +|+ .+.+
T Consensus 25 ~~l~~L~l~g~i~~----~~-~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 25 NSITHLTLTGKLNA----ED-FRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHCSEEEEEEEECH----HH-HHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred CceeEEEEeccccH----HH-HHHHHHhhccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhccccccc
Confidence 66788888764321 11 123333 888999999999887221111222334444444442 222 2344
Q ss_pred ---CCCCcEEEccCCcCcccchh-hcccccCcEEEcCCCC--CC-CCCCCccccCccccccccc---CCCCCCccccCCC
Q 045237 499 ---LLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGCIT--LP-APPENYCSSLKNLIFISAL---HPCSCTPDTLGRL 568 (758)
Q Consensus 499 ---L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~---~~~~~~~~~l~~l 568 (758)
+++|+.|+|.+ .+..+++. |..+++|+.|++..+. .+ +..+..+.++..+...... .........+..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77777777777 67777654 6677777777776521 22 2234445455444422210 0000112223455
Q ss_pred CCCC-eEEEEecCchhhhhHHHHh----hccCCCceEEeeecCCCcccccc-cCCcCCCCCCccEEEEeeccCCCCCccc
Q 045237 569 PNVQ-TLKIYGDLSSYQSGLSKSL----RELLKLESLKLVNKSKGWQLSQM-ILSEYQFPPSLTQLSLSNTELKEDPMPT 642 (758)
Q Consensus 569 ~~L~-~L~l~~~~~~~~~~l~~~l----~~~~~L~~L~L~~~~~~~~~~~l-lp~~~~l~~~L~~L~L~~~~l~~~~~~~ 642 (758)
..|+ .+.+... +.++..+ ....++..+.+.+.- ... +..+...+++|+.|+|.+|.+.......
T Consensus 176 ~~L~~~i~~~~~-----~~l~~~~~~~~~~~~~~~~l~~~~~l-----~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a 245 (329)
T 3sb4_A 176 EPLETTIQVGAM-----GKLEDEIMKAGLQPRDINFLTIEGKL-----DNADFKLIRDYMPNLVSLDISKTNATTIPDFT 245 (329)
T ss_dssp CCCEEEEEECTT-----CCHHHHHHHTTCCGGGCSEEEEEECC-----CHHHHHHHHHHCTTCCEEECTTBCCCEECTTT
T ss_pred cccceeEEecCC-----CcHHHHHhhcccCccccceEEEeeee-----cHHHHHHHHHhcCCCeEEECCCCCcceecHhh
Confidence 5666 4545433 2233222 234567777776610 000 0011111289999999998877666778
Q ss_pred ccCCCCCceEEEeccccCCceeEEeCCCCCcccc-EEeeccCCCcCceE-ECcccccccceeeEeccccCCCCch-hhcC
Q 045237 643 LEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLK-ILHLKSMFWLEEWT-MGARAMTKLESLIINPCAYLKKLPE-ELWR 719 (758)
Q Consensus 643 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~ 719 (758)
|.++++|+.|.|.+| + ..+.... +.++++|+ .+.+.+ .++.++ ..+..|++|+.|++.++. ++.++. .+.+
T Consensus 246 F~~~~~L~~l~l~~n-i-~~I~~~a-F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~ 319 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN-L-KTIGQRV-FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGN 319 (329)
T ss_dssp TTTCTTCCEEECCTT-C-CEECTTT-TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCT
T ss_pred hhCCCCCCEEECCcc-c-ceehHHH-hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcC
Confidence 999999999999866 3 2233222 77888999 999987 577775 567889999999998776 666664 7889
Q ss_pred CCCCcEEEE
Q 045237 720 IESFRKLEL 728 (758)
Q Consensus 720 l~sL~~L~l 728 (758)
+++|+.|+.
T Consensus 320 ~~~L~~ly~ 328 (329)
T 3sb4_A 320 GVPSKLIYK 328 (329)
T ss_dssp TCCCCEEEC
T ss_pred Ccchhhhcc
Confidence 999999874
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=2.1e-12 Score=150.73 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=76.9
Q ss_pred CCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCCCCCCCCCcccc
Q 045237 466 LDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCITLPAPPENYCSS 545 (758)
Q Consensus 466 l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~ 545 (758)
+...|..+..+.+|+.|+|++|.+..+|..+.++++|++|+|++|.+..+|..+.+|++|++|+++++
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N------------ 280 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN------------ 280 (727)
T ss_dssp ---------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS------------
T ss_pred eecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC------------
Confidence 33446667777888888888888878887777888888888888877777777777777777777653
Q ss_pred CcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeee
Q 045237 546 LKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVN 604 (758)
Q Consensus 546 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 604 (758)
... .+|..++.|++|+.|++++| ....+|..+..+++|+.|+|++
T Consensus 281 ---------~l~--~lp~~~~~l~~L~~L~L~~N---~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 281 ---------RLT--SLPAELGSCFQLKYFYFFDN---MVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp ---------CCS--SCCSSGGGGTTCSEEECCSS---CCCCCCSSTTSCTTCCCEECTT
T ss_pred ---------cCC--ccChhhcCCCCCCEEECCCC---CCCccChhhhcCCCccEEeCCC
Confidence 111 35666778888888888887 3346666677777777777766
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.15 E-value=3e-11 Score=129.32 Aligned_cols=170 Identities=20% Similarity=0.224 Sum_probs=113.6
Q ss_pred ccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchh-hc-ccccCcEEEcCCCCCCCCCCCccccCcccccccccC
Q 045237 479 LRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPED-IW-NMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALH 556 (758)
Q Consensus 479 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~-~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 556 (758)
-+.+++++++++.+|..+. .+++.|+|++|.+..+|.. +. ++++|++|+++++. .
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~---------------------i 76 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH---------------------L 76 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC---------------------C
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc---------------------C
Confidence 4789999999999998775 5699999999999998765 44 78888888887631 1
Q ss_pred CCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc---cC-CcCCCCCCccEEEEee
Q 045237 557 PCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM---IL-SEYQFPPSLTQLSLSN 632 (758)
Q Consensus 557 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l---lp-~~~~l~~~L~~L~L~~ 632 (758)
.. ..+..+..+++|+.|++++| ......+..+..+++|+.|+|++ +.+ .| .+..+ ++|+.|+|++
T Consensus 77 ~~-i~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~-------N~i~~~~~~~~~~l-~~L~~L~L~~ 145 (361)
T 2xot_A 77 NF-ISSEAFVPVPNLRYLDLSSN--HLHTLDEFLFSDLQALEVLLLYN-------NHIVVVDRNAFEDM-AQLQKLYLSQ 145 (361)
T ss_dssp CE-ECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCS-------SCCCEECTTTTTTC-TTCCEEECCS
T ss_pred Cc-cChhhccCCCCCCEEECCCC--cCCcCCHHHhCCCcCCCEEECCC-------CcccEECHHHhCCc-ccCCEEECCC
Confidence 11 12234555666666666665 22222233455666666666666 333 34 67777 8999999999
Q ss_pred ccCCCCCcccc---cCCCCCceEEEeccccCCceeEEeCCCCCcc--ccEEeeccCC
Q 045237 633 TELKEDPMPTL---EKLPHLLVLKLKQNSYSGRKLACVGSGGFPK--LKILHLKSMF 684 (758)
Q Consensus 633 ~~l~~~~~~~l---~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~--L~~L~L~~~~ 684 (758)
|.+....+..+ ..+++|+.|+|++|.+....+.. +..++. |+.|+|++|+
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD--LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHH--HHHSCHHHHTTEECCSSC
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHH--hhhccHhhcceEEecCCC
Confidence 98876544444 57899999999988877533221 334555 4778888875
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=2.3e-11 Score=112.33 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=75.5
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcc-cCccccCCCCCcE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKS-LPSSLCNLLNLQT 504 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~ 504 (758)
++++.|.+.++.... ...+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+.++++|++
T Consensus 17 ~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 556667666665531 12334567778888888888887766 667788888888888888876 7776777888888
Q ss_pred EEccCCcCcccc--hhhcccccCcEEEcCC
Q 045237 505 LDMPSSYIDHTP--EDIWNMHKLMHLNFGC 532 (758)
Q Consensus 505 L~L~~~~l~~lp--~~i~~l~~L~~L~l~~ 532 (758)
|++++|.+..+| ..+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 888888887765 6677788888888776
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=2.7e-11 Score=115.33 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=64.5
Q ss_pred hccCCeeEEEEcCCCCCCCCCccccCcc-cccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhh-cccccCcE
Q 045237 450 CKKFKLLRVLNMGSLVLDQFPSGIENLF-LLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDI-WNMHKLMH 527 (758)
Q Consensus 450 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i-~~l~~L~~ 527 (758)
+.++.+|+.|++++|.++.+|. +..+. +|++|++++|.++.+ ..+.++++|++|++++|.+..+|..+ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4567788888888888887765 45554 888888888888877 57888888888888888888887654 77888888
Q ss_pred EEcCCC
Q 045237 528 LNFGCI 533 (758)
Q Consensus 528 L~l~~~ 533 (758)
|+++++
T Consensus 93 L~L~~N 98 (176)
T 1a9n_A 93 LILTNN 98 (176)
T ss_dssp EECCSC
T ss_pred EECCCC
Confidence 888763
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=1.3e-10 Score=112.34 Aligned_cols=120 Identities=17% Similarity=0.199 Sum_probs=84.7
Q ss_pred EEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCcc--ccCCCCCcEEEccCCcCccc-chhhcccccCcEEEcCCC
Q 045237 457 RVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSS--LCNLLNLQTLDMPSSYIDHT-PEDIWNMHKLMHLNFGCI 533 (758)
Q Consensus 457 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~ 533 (758)
++++++++.++.+|..+.. +|++|++++|.++.+|.. ++++++|++|+|++|.+..+ |..+..+++|++|+++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5778888888888876654 888888888888877754 78888888888888888777 566788888888888762
Q ss_pred --CCC-CCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEec
Q 045237 534 --TLP-APPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGD 579 (758)
Q Consensus 534 --~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 579 (758)
..+ +..+..+++|++|++.++.... ..|..+..+++|+.|++++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCC
Confidence 122 2235566666666666555444 44556666777777777666
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.10 E-value=3.3e-10 Score=109.47 Aligned_cols=121 Identities=20% Similarity=0.201 Sum_probs=81.8
Q ss_pred EEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccch-hhcccccCcEEEcCCC--
Q 045237 457 RVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHLNFGCI-- 533 (758)
Q Consensus 457 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~-- 533 (758)
++++++++.++.+|..+. .+|++|++++|.++.+|..+.++++|++|+|++|.+..++. .+.++++|++|+++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 467777777777776554 47888888888888888778888888888888887777754 4777777888877762
Q ss_pred CCCC-CCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecC
Q 045237 534 TLPA-PPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDL 580 (758)
Q Consensus 534 ~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 580 (758)
..++ ..+..+++|+.|++.++.... ..+..+..+++|+.|++++|.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCC
Confidence 2222 235566666666665554433 223346667777777777663
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=8.4e-11 Score=111.89 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=83.8
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccc-cCCCCCcE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSL-CNLLNLQT 504 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~ 504 (758)
.+++.|.+.++.... .+.+....++|++|++++|.++.+ ..++.+++|++|++++|.++.+|..+ ..+++|++
T Consensus 19 ~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 567778877776642 133344445999999999999877 67899999999999999999888766 89999999
Q ss_pred EEccCCcCcccch--hhcccccCcEEEcCCC
Q 045237 505 LDMPSSYIDHTPE--DIWNMHKLMHLNFGCI 533 (758)
Q Consensus 505 L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~ 533 (758)
|++++|.+..+|. .+..+++|++|+++++
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 9999999999887 7888999999998763
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=2.5e-12 Score=125.13 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=66.3
Q ss_pred HhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEE
Q 045237 449 ICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHL 528 (758)
Q Consensus 449 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 528 (758)
.+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..+..+++|++|++++|.+..+| .+..+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4444555555555555554444 445555555555555555555544444455555555555444444 34444444444
Q ss_pred EcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHH----------HhhccCCCc
Q 045237 529 NFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSK----------SLRELLKLE 598 (758)
Q Consensus 529 ~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~----------~l~~~~~L~ 598 (758)
++ .++.......+..+..+++|+.|++++| ......|. .+..+++|+
T Consensus 121 ~l---------------------~~N~i~~~~~~~~l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 121 YM---------------------SNNKITNWGEIDKLAALDKLEDLLLAGN--PLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EE---------------------SEEECCCHHHHHHHTTTTTCSEEEECSC--HHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred EC---------------------CCCcCCchhHHHHHhcCCCCCEEEecCC--ccccccccccchHHHHHHHHHhCCCcE
Confidence 44 4433322011235778888888888887 33333222 256666666
Q ss_pred eEE
Q 045237 599 SLK 601 (758)
Q Consensus 599 ~L~ 601 (758)
.|+
T Consensus 178 ~Ld 180 (198)
T 1ds9_A 178 KLD 180 (198)
T ss_dssp EEC
T ss_pred EEC
Confidence 665
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=8.4e-12 Score=121.39 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=90.5
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCccccCCCCCcEE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTL 505 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 505 (758)
++++.|.+.++.... .+ .+..+++|++|++++|.++.+|..++.+++|++|++++|.++.+| .+.++++|++|
T Consensus 48 ~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp TTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred CCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 899999999887753 23 778899999999999999999998888999999999999999988 78999999999
Q ss_pred EccCCcCcccch--hhcccccCcEEEcCCC
Q 045237 506 DMPSSYIDHTPE--DIWNMHKLMHLNFGCI 533 (758)
Q Consensus 506 ~L~~~~l~~lp~--~i~~l~~L~~L~l~~~ 533 (758)
++++|.+..+|. .+..+++|++|+++++
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 999999998875 6889999999999873
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.92 E-value=1.5e-09 Score=104.66 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=81.3
Q ss_pred ccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchh--hcccccCcEEEcCCCC--C-CCCCCCccccCccccccc
Q 045237 479 LRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPED--IWNMHKLMHLNFGCIT--L-PAPPENYCSSLKNLIFIS 553 (758)
Q Consensus 479 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~--i~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~ 553 (758)
-+++++++++++.+|..+.. +|++|++++|.+..+|.. +..+++|++|+++++. . .|..+..+++|++|++.+
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 38999999999999987764 999999999999998764 8889999999987631 1 233444455555555444
Q ss_pred ccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccc---cC-CcCCCCCCccEEE
Q 045237 554 ALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQM---IL-SEYQFPPSLTQLS 629 (758)
Q Consensus 554 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~l---lp-~~~~l~~~L~~L~ 629 (758)
+.... ..+..+.. +++|+.|++++ +.+ .| .+..+ ++|+.|+
T Consensus 88 N~l~~-~~~~~~~~--------------------------l~~L~~L~L~~-------N~l~~~~~~~~~~l-~~L~~L~ 132 (192)
T 1w8a_A 88 NKIKE-ISNKMFLG--------------------------LHQLKTLNLYD-------NQISCVMPGSFEHL-NSLTSLN 132 (192)
T ss_dssp CCCCE-ECSSSSTT--------------------------CTTCCEEECCS-------SCCCEECTTSSTTC-TTCCEEE
T ss_pred CcCCc-cCHHHhcC--------------------------CCCCCEEECCC-------CcCCeeCHHHhhcC-CCCCEEE
Confidence 44332 22333444 44555555544 222 34 55666 7777777
Q ss_pred EeeccCCCC
Q 045237 630 LSNTELKED 638 (758)
Q Consensus 630 L~~~~l~~~ 638 (758)
|++|.+.+.
T Consensus 133 L~~N~l~c~ 141 (192)
T 1w8a_A 133 LASNPFNCN 141 (192)
T ss_dssp CTTCCBCCS
T ss_pred eCCCCccCc
Confidence 777776654
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.90 E-value=6.9e-09 Score=98.59 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=69.4
Q ss_pred EEEEcCCCCCCCCCccccCcccccEEeccCCCCcccCcc-ccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCC--
Q 045237 457 RVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSLPSS-LCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGC-- 532 (758)
Q Consensus 457 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~-- 532 (758)
+.++++++.++.+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 455666666666654433 4666666666666655543 35666666666666666666544 45666666666655
Q ss_pred CCCCCCC-CCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecC
Q 045237 533 ITLPAPP-ENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDL 580 (758)
Q Consensus 533 ~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 580 (758)
...+|.. +..+++|+.|++.++.... ..+..+..+++|+.|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCC
Confidence 2222222 4555666666655554432 223335677888888888773
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.89 E-value=4.9e-09 Score=99.63 Aligned_cols=103 Identities=18% Similarity=0.262 Sum_probs=52.3
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCcc-ccCcccccEEeccCCCCcccCcc-ccCCCCCc
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSG-IENLFLLRCLKLDVPSLKSLPSS-LCNLLNLQ 503 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~ 503 (758)
++++.|.+.++... ...+..|..+++|++|++++|.++.+|.. ++.+++|++|++++|.++.+|.. +.++++|+
T Consensus 28 ~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEeCCCccc----EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 44555555554443 22333445555555555555555544432 35555555555555555544443 34555555
Q ss_pred EEEccCCcCcccchh-hcccccCcEEEcCC
Q 045237 504 TLDMPSSYIDHTPED-IWNMHKLMHLNFGC 532 (758)
Q Consensus 504 ~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 532 (758)
+|++++|.+..+|.. +..+++|++|++++
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 555555555555444 24455555555544
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.89 E-value=4.1e-09 Score=101.66 Aligned_cols=98 Identities=17% Similarity=0.270 Sum_probs=69.9
Q ss_pred ccEEeccCCCCcccCccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCC--CCCC-CCCCccccCccccccccc
Q 045237 479 LRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCI--TLPA-PPENYCSSLKNLIFISAL 555 (758)
Q Consensus 479 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~-~~~~~l~~L~~L~l~~~~ 555 (758)
-++++++++.++.+|..+. .+|++|++++|.+..+|..+.++++|++|+++++ ..++ ..+..+++|++|++.++.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3689999999999998774 6999999999999999999999999999999873 1222 235555666666655554
Q ss_pred CCCCCCccccCCCCCCCeEEEEec
Q 045237 556 HPCSCTPDTLGRLPNVQTLKIYGD 579 (758)
Q Consensus 556 ~~~~~~~~~l~~l~~L~~L~l~~~ 579 (758)
... ..+..+..+++|+.|++++|
T Consensus 90 l~~-i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 90 LRC-IPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCB-CCTTTTTTCTTCCEEECCSS
T ss_pred cCE-eCHHHhCCCCCCCEEECCCC
Confidence 433 33344555555555555554
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=1.4e-08 Score=96.19 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=49.2
Q ss_pred EEEEcCCCCCCCCCccccCcccccEEeccCCCCccc-CccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCC
Q 045237 457 RVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSL-PSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGC 532 (758)
Q Consensus 457 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 532 (758)
+.++++++.++.+|..+. .+|++|+|++|.++.+ |..+.++++|++|+|++|.+..+|.. +.++++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 466777777777776554 5677777777777755 44566777777777777777766655 35666666666654
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=6.5e-08 Score=104.39 Aligned_cols=247 Identities=13% Similarity=0.129 Sum_probs=145.5
Q ss_pred hhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccC-ccccCCCCCcEEEccCCcCcccchhhccc
Q 045237 445 DCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLP-SSLCNLLNLQTLDMPSSYIDHTPEDIWNM 522 (758)
Q Consensus 445 ~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~i~~l 522 (758)
+....|.++ +|+.+.+..+ ++.++ ..|.++ +|+.+.+.. .++.++ ..+.+|.+|+.+++++|.+..+|......
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~ 202 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY 202 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee
Confidence 344556664 5777777665 55554 334443 688888775 566555 34677888888888888888887765556
Q ss_pred ccCcEEEcCCC-CCCC-CCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhH-HHHhhccCCCce
Q 045237 523 HKLMHLNFGCI-TLPA-PPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGL-SKSLRELLKLES 599 (758)
Q Consensus 523 ~~L~~L~l~~~-~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l-~~~l~~~~~L~~ 599 (758)
.+|+.+.+... ..++ ..+..|++|+.+. +..+ ...+ ...+.+ .+|+.
T Consensus 203 ~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~-------------------------l~~~----l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 203 AGIEEVLLPVTLKEIGSQAFLKTSQLKTIE-------------------------IPEN----VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCCEE-------------------------CCTT----CCEECTTTTTT-CCCSE
T ss_pred cccCEEEeCCchheehhhHhhCCCCCCEEe-------------------------cCCC----ccCcccccccc-CCccE
Confidence 77777777541 1111 2234444555444 3321 0001 111222 35555
Q ss_pred EEeeecCCCcccccccC--CcCCCCCCccEEEEeeccCC-----CCCcccccCCCCCceEEEeccccCCceeEEeCCCCC
Q 045237 600 LKLVNKSKGWQLSQMIL--SEYQFPPSLTQLSLSNTELK-----EDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGF 672 (758)
Q Consensus 600 L~L~~~~~~~~~~~llp--~~~~l~~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 672 (758)
+.+..+ +.. ++ .+..+ ++|+.+.+.++.+. ......|.++++|+.+.|. +.+. .+... .+.++
T Consensus 253 i~lp~~-----i~~-I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~-aF~~c 322 (401)
T 4fdw_A 253 VKLPNG-----VTN-IASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQG-LLGGN 322 (401)
T ss_dssp EEEETT-----CCE-ECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTT-TTTTC
T ss_pred EEeCCC-----ccE-EChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhh-hhcCC
Confidence 555321 011 22 45555 77777777776543 2344577888999999887 3332 12222 26778
Q ss_pred ccccEEeeccCCCcCceE-ECcccccccceeeEeccccCCCCchhhcCCC-CCcEEEEecCcHHHHHHhhc
Q 045237 673 PKLKILHLKSMFWLEEWT-MGARAMTKLESLIINPCAYLKKLPEELWRIE-SFRKLELHWPQPELRKKLRA 741 (758)
Q Consensus 673 ~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-sL~~L~l~~c~~~~~~~~~~ 741 (758)
++|+.+.|.. +++.+. ..+..+ +|+.+.+.++......+..+..++ +++.|++-... .+.++.
T Consensus 323 ~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~---~~~y~~ 387 (401)
T 4fdw_A 323 RKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES---VEKYKN 387 (401)
T ss_dssp CSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG---HHHHHH
T ss_pred CCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH---HHHhhh
Confidence 8999999965 366664 346677 999999998863332334556664 78889886543 555554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.78 E-value=1.7e-08 Score=95.23 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=56.8
Q ss_pred eEEEEcCCCCCCCCCccccCcccccEEeccCCCCccc-CccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCC
Q 045237 456 LRVLNMGSLVLDQFPSGIENLFLLRCLKLDVPSLKSL-PSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGC 532 (758)
Q Consensus 456 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 532 (758)
.+.++++++.++.+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|.+..+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4577888888888887664 6788888888888866 55578888888888888888877765 46777777777765
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.77 E-value=6.5e-08 Score=104.39 Aligned_cols=163 Identities=10% Similarity=0.093 Sum_probs=101.6
Q ss_pred ceeEEEeeCCCCccccccccc-cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccccEE
Q 045237 405 TIKRFAVPKNLTKFVSLEHID-TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRCL 482 (758)
Q Consensus 405 ~~r~Ls~~~~~~~~~~~~~~~-~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L 482 (758)
....+.++ +.........+. .+|+++.+... .. .+....|.++ .|+.+.+.. .++.++ ..|.+|.+|+.+
T Consensus 114 ~l~~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~-i~----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 114 GYNEIILP-NSVKSIPKDAFRNSQIAKVVLNEG-LK----SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SCSEEECC-TTCCEECTTTTTTCCCSEEECCTT-CC----EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CccEEEEC-CccCEehHhhcccCCccEEEeCCC-cc----EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 34444444 333322233333 56777776544 22 4455667774 699999986 566654 678899999999
Q ss_pred eccCCCCcccCccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCCC-CCCCCC-CCccccCcccccccccCCCC
Q 045237 483 KLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGCI-TLPAPP-ENYCSSLKNLIFISALHPCS 559 (758)
Q Consensus 483 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~-~~~~~~-~~~l~~L~~L~l~~~~~~~~ 559 (758)
++..|+++.+|...-...+|+.+.+..+ +..++.. |.++++|+.+.+... ..++.. +.. .+|+.+.+.. +...
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~-~i~~- 261 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN-GVTN- 261 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET-TCCE-
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC-CccE-
Confidence 9999999999887666799999999854 7777654 778999999998652 222222 222 4555555421 1111
Q ss_pred CCccccCCCCCCCeEEEEec
Q 045237 560 CTPDTLGRLPNVQTLKIYGD 579 (758)
Q Consensus 560 ~~~~~l~~l~~L~~L~l~~~ 579 (758)
.....+..+++|+.+.+.++
T Consensus 262 I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESS
T ss_pred EChhHhhCCCCCCEEEeCCc
Confidence 12234445555555555543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.70 E-value=2.6e-08 Score=94.24 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=65.5
Q ss_pred CeeEEEEcCCCCCCCC-CccccCcccccEEeccCCCCcccCcc-ccCCCCCcEEEccCCcCcccchh-hcccccCcEEEc
Q 045237 454 KLLRVLNMGSLVLDQF-PSGIENLFLLRCLKLDVPSLKSLPSS-LCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNF 530 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 530 (758)
+.|++|+|++|.++.+ |..++++++|++|+|++|.++.+|.. +.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 6788888888888866 56788888888888888888888776 47888888888888888888776 778888888888
Q ss_pred CCC
Q 045237 531 GCI 533 (758)
Q Consensus 531 ~~~ 533 (758)
+++
T Consensus 113 ~~N 115 (174)
T 2r9u_A 113 YNN 115 (174)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.69 E-value=2.4e-08 Score=94.09 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=67.5
Q ss_pred CeeEEEEcCCCCCCCC-CccccCcccccEEeccCCCCcccCcc-ccCCCCCcEEEccCCcCcccchh-hcccccCcEEEc
Q 045237 454 KLLRVLNMGSLVLDQF-PSGIENLFLLRCLKLDVPSLKSLPSS-LCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNF 530 (758)
Q Consensus 454 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 530 (758)
+.|++|+|++|.++.+ |..+..+++|++|+|++|.++.+|.. +.++++|++|+|++|.+..+|.. +.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 6788899999998876 56788899999999999999888776 47899999999999988888765 778888999888
Q ss_pred CCC
Q 045237 531 GCI 533 (758)
Q Consensus 531 ~~~ 533 (758)
+++
T Consensus 110 ~~N 112 (170)
T 3g39_A 110 LNN 112 (170)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=6.1e-08 Score=102.01 Aligned_cols=99 Identities=15% Similarity=0.087 Sum_probs=71.8
Q ss_pred CCCCCeEEEEecCchhhhhHH-HHhhccCCCceEEeeecCCCcccccccC--CcCCCCCCcc-EEEEeeccCCCCCcccc
Q 045237 568 LPNVQTLKIYGDLSSYQSGLS-KSLRELLKLESLKLVNKSKGWQLSQMIL--SEYQFPPSLT-QLSLSNTELKEDPMPTL 643 (758)
Q Consensus 568 l~~L~~L~l~~~~~~~~~~l~-~~l~~~~~L~~L~L~~~~~~~~~~~llp--~~~~l~~~L~-~L~L~~~~l~~~~~~~l 643 (758)
+++|+.|++.++. ...++ ..+..+++|+.|.+..+ +.. ++ .+..+ ++|+ .+++.+ .+....+..|
T Consensus 225 ~~~L~~l~L~~n~---i~~I~~~aF~~~~~L~~l~l~~n-----i~~-I~~~aF~~~-~~L~~~l~l~~-~l~~I~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKTN---ATTIPDFTFAQKKYLLKIKLPHN-----LKT-IGQRVFSNC-GRLAGTLELPA-SVTAIEFGAF 293 (329)
T ss_dssp CTTCCEEECTTBC---CCEECTTTTTTCTTCCEEECCTT-----CCE-ECTTTTTTC-TTCCEEEEECT-TCCEECTTTT
T ss_pred cCCCeEEECCCCC---cceecHhhhhCCCCCCEEECCcc-----cce-ehHHHhhCC-hhccEEEEEcc-cceEEchhhh
Confidence 7899999998862 33333 56888999999999772 112 44 67777 9999 999988 5555566789
Q ss_pred cCCCCCceEEEeccccCCceeEEeCCCCCccccEEe
Q 045237 644 EKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILH 679 (758)
Q Consensus 644 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ 679 (758)
.+|++|+.|++++|.+....... +.++++|+.+.
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~~~a--F~~~~~L~~ly 327 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLGDEL--FGNGVPSKLIY 327 (329)
T ss_dssp TTCTTEEEEEECSSCCCEECTTT--TCTTCCCCEEE
T ss_pred hCCccCCEEEeCCCccCccchhh--hcCCcchhhhc
Confidence 99999999999877664322211 67778888775
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=7.9e-08 Score=102.67 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=57.1
Q ss_pred cccceEEeccccCCcchhhhhHHHhc-cCCeeEEEEcCCCCCCC--CCccccCcccccEEeccCCCCcc-----cCccc-
Q 045237 426 TYLHSLQNFALESDHSALLDCENICK-KFKLLRVLNMGSLVLDQ--FPSGIENLFLLRCLKLDVPSLKS-----LPSSL- 496 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~l~~--lp~~i~~l~~Lr~L~L~~~~i~~-----lp~~i- 496 (758)
+.+++|.+.++.........+...+. ..++|+.|+|++|.++. +......+.+|++|+|++|.++. +...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 44556666655554321122223333 23577777777777651 22222345567777777777652 22222
Q ss_pred cCCCCCcEEEccCCcCcc-----cchhhcccccCcEEEcCC
Q 045237 497 CNLLNLQTLDMPSSYIDH-----TPEDIWNMHKLMHLNFGC 532 (758)
Q Consensus 497 ~~L~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~ 532 (758)
...++|++|+|++|.++. ++..+..+++|++|++++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC
Confidence 245667777777776643 344445566666666654
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=1.3e-08 Score=108.70 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=36.0
Q ss_pred CCeeEEEEcCCCCCCC-----CCcccc-CcccccEEeccCCCCcc--cCccccCCCCCcEEEccCCcCcc
Q 045237 453 FKLLRVLNMGSLVLDQ-----FPSGIE-NLFLLRCLKLDVPSLKS--LPSSLCNLLNLQTLDMPSSYIDH 514 (758)
Q Consensus 453 l~~Lr~L~L~~~~l~~-----lp~~i~-~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~ 514 (758)
++.|+.|+|++|.++. +...+. ...+|++|+|++|.++. +..-...+.+|++|+|++|.+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH
Confidence 3457788888887762 222222 22577777777777652 22222345567777777776643
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.39 E-value=6.8e-07 Score=94.70 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=64.4
Q ss_pred hccCCeeEEEEcCC-CCCCCCC-ccccCcccccEEeccCCCCcccCc-cccCCCCCcEEEccCCcCcccchhhcccccCc
Q 045237 450 CKKFKLLRVLNMGS-LVLDQFP-SGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLM 526 (758)
Q Consensus 450 ~~~l~~Lr~L~L~~-~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~ 526 (758)
+..+++|+.|+|++ |.++.+| ..|+.|++|++|+|++|.|+.+|. .+.+|++|+.|+|++|.+..+|..+.....|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 77788888888885 7788666 568888888888888888886654 56888888888888888888877655444488
Q ss_pred EEEcCCC
Q 045237 527 HLNFGCI 533 (758)
Q Consensus 527 ~L~l~~~ 533 (758)
.|++.++
T Consensus 107 ~l~l~~N 113 (347)
T 2ifg_A 107 ELVLSGN 113 (347)
T ss_dssp EEECCSS
T ss_pred EEEeeCC
Confidence 8888763
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.38 E-value=4.4e-08 Score=103.84 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=77.0
Q ss_pred HHHHhhccCCCceEEeeecCCCcccccc-cCCcCCCCCCccEEEEeeccCCCCCccccc--CCCCCceEEEec--cccCC
Q 045237 587 LSKSLRELLKLESLKLVNKSKGWQLSQM-ILSEYQFPPSLTQLSLSNTELKEDPMPTLE--KLPHLLVLKLKQ--NSYSG 661 (758)
Q Consensus 587 l~~~l~~~~~L~~L~L~~~~~~~~~~~l-lp~~~~l~~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~--n~~~~ 661 (758)
+...+..+++|+.|.|+++. .+ +|.+ .+ ++|+.|+|..|.+.......++ .+|+|+.|+|+. +...+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~------~l~l~~~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTN------NLSIGKK-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCB------TCBCCSC-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC
T ss_pred HHHHHhcCCCCcEEEEeCCC------Cceeccc-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc
Confidence 44555566677777776631 11 2222 24 7788888877765444333343 677888887753 12211
Q ss_pred ce-e----EEeCCCCCccccEEeeccCCCcCceEE---CcccccccceeeEeccccCCC-----CchhhcCCCCCcEEEE
Q 045237 662 RK-L----ACVGSGGFPKLKILHLKSMFWLEEWTM---GARAMTKLESLIINPCAYLKK-----LPEELWRIESFRKLEL 728 (758)
Q Consensus 662 ~~-~----~~~~~~~~~~L~~L~L~~~~~l~~l~~---~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~sL~~L~l 728 (758)
.. . .......||+|+.|.|.+|......+. ....+|+|++|+|+.|. ++. ++.++.++++|+.|++
T Consensus 236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEEC
Confidence 10 0 011023578888888877753321111 11357788888887765 332 4445566788888888
Q ss_pred ecCc
Q 045237 729 HWPQ 732 (758)
Q Consensus 729 ~~c~ 732 (758)
++|+
T Consensus 315 ~~n~ 318 (362)
T 2ra8_A 315 KYNY 318 (362)
T ss_dssp CSBB
T ss_pred CCCc
Confidence 8775
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.34 E-value=3.4e-06 Score=90.98 Aligned_cols=277 Identities=15% Similarity=0.113 Sum_probs=156.7
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccccEEeccC------------CC----
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDV------------PS---- 488 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~------------~~---- 488 (758)
.+|+++.+... .. .+...+|.++++|+.+++..+ ++.++ ..+.++..|+.+.+.. +.
T Consensus 71 ~~L~~i~lp~~-i~----~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 71 RKVTEIKIPST-VR----EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTEEEEECCTT-CC----EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred CCceEEEeCCC-cc----CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 45666665422 11 344556777777777777543 33332 2344444444433321 11
Q ss_pred -----Cccc-CccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCCC-CCC-CCCCCccccCcccccccccCCCC
Q 045237 489 -----LKSL-PSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGCI-TLP-APPENYCSSLKNLIFISALHPCS 559 (758)
Q Consensus 489 -----i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~-~~~-~~~~~~l~~L~~L~l~~~~~~~~ 559 (758)
+..+ ...+.++.+|+.+.+..+ +..++.. +.++.+|+.+.+... ..+ ...+.++..|+.+.+.....
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~--- 220 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLY--- 220 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCC---
T ss_pred ccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCce---
Confidence 1111 234678899999999765 4456544 777889999888652 222 23466777888776544322
Q ss_pred CCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccC-CcCCCCCCccEEEEeeccCCCC
Q 045237 560 CTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL-SEYQFPPSLTQLSLSNTELKED 638 (758)
Q Consensus 560 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp-~~~~l~~~L~~L~L~~~~l~~~ 638 (758)
..........+|+.+.+.... ...-...+..+..|+.+.+..+- ..+-. .+... ..++.+.+....+
T Consensus 221 ~i~~~~~~~~~l~~i~ip~~~---~~i~~~~f~~~~~l~~~~~~~~~-----~~i~~~~F~~~-~~l~~~~~~~~~i--- 288 (394)
T 4fs7_A 221 YLGDFALSKTGVKNIIIPDSF---TELGKSVFYGCTDLESISIQNNK-----LRIGGSLFYNC-SGLKKVIYGSVIV--- 288 (394)
T ss_dssp EECTTTTTTCCCCEEEECTTC---CEECSSTTTTCSSCCEEEECCTT-----CEECSCTTTTC-TTCCEEEECSSEE---
T ss_pred EeehhhcccCCCceEEECCCc---eecccccccccccceeEEcCCCc-----ceeeccccccc-cccceeccCceee---
Confidence 122223345678888776431 11112345677888888886521 11112 44444 7777776655432
Q ss_pred CcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceE-ECcccccccceeeEeccccCCCCch-h
Q 045237 639 PMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWT-MGARAMTKLESLIINPCAYLKKLPE-E 716 (758)
Q Consensus 639 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~ 716 (758)
....+..+.+|+.+.+..+ +. .+... .+.++.+|+.+.|.+ .++.+. ..+..|.+|+.+.+..+ ++.++. .
T Consensus 289 ~~~~F~~~~~L~~i~l~~~-i~-~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~a 361 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS-VK-FIGEE-AFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANA 361 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CC-EECTT-TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTT
T ss_pred ccccccccccccccccccc-cc-eechh-hhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHH
Confidence 2235667778888887633 21 11111 156677888888754 356664 34567788888877644 555543 5
Q ss_pred hcCCCCCcEEEEecC
Q 045237 717 LWRIESFRKLELHWP 731 (758)
Q Consensus 717 l~~l~sL~~L~l~~c 731 (758)
+.+|++|+.+.+...
T Consensus 362 F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 362 FQGCINLKKVELPKR 376 (394)
T ss_dssp BTTCTTCCEEEEEGG
T ss_pred hhCCCCCCEEEECCC
Confidence 777888888887543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=7e-07 Score=94.59 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=37.2
Q ss_pred EcCCC-CCCCCCccccCcccccEEeccC-CCCcccC-ccccCCCCCcEEEccCCcCcccch-hhcccccCcEEEcCC
Q 045237 460 NMGSL-VLDQFPSGIENLFLLRCLKLDV-PSLKSLP-SSLCNLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHLNFGC 532 (758)
Q Consensus 460 ~L~~~-~l~~lp~~i~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~ 532 (758)
+++++ .++.+|. +..+.+|++|+|++ |.++.+| ..+.+|++|+.|+|++|.+..+|. .|.+|++|++|++++
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 44444 4555555 55555555555553 5555444 234555555555555555555433 345555555555554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=9.2e-07 Score=93.65 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=73.4
Q ss_pred hccCCeeEEEEcCCCCCC----------CCCccccCcccccEEeccCCCCcccCccccCCCCCcEEEccCCcCccc-chh
Q 045237 450 CKKFKLLRVLNMGSLVLD----------QFPSGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHT-PED 518 (758)
Q Consensus 450 ~~~l~~Lr~L~L~~~~l~----------~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~ 518 (758)
..++++|+.|.+.+.... .++..+..+++|+.|+|+++.-..+|. + .+++|++|+|..|.+..- ...
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 445677777777554221 244445667888888888763224554 3 378888888887765321 122
Q ss_pred hc--ccccCcEEEcCCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhh---c
Q 045237 519 IW--NMHKLMHLNFGCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLR---E 593 (758)
Q Consensus 519 i~--~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~---~ 593 (758)
+. .+++|++|+++.......+-.....+..+ . ....+++|+.|.+.+|. .....+..+. .
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~------------l-~~~~~p~Lr~L~L~~~~--i~~~~~~~la~a~~ 277 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL------------F-SKDRFPNLKWLGIVDAE--EQNVVVEMFLESDI 277 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG------------S-CTTTCTTCCEEEEESCT--THHHHHHHHHHCSS
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHH------------H-hcCCCCCcCEEeCCCCC--CchHHHHHHHhCcc
Confidence 33 67888888764211100000001111100 0 01357899999999883 3333333332 3
Q ss_pred cCCCceEEeee
Q 045237 594 LLKLESLKLVN 604 (758)
Q Consensus 594 ~~~L~~L~L~~ 604 (758)
+++|+.|+|+.
T Consensus 278 ~~~L~~LdLs~ 288 (362)
T 2ra8_A 278 LPQLETMDISA 288 (362)
T ss_dssp GGGCSEEECCS
T ss_pred CCCCCEEECCC
Confidence 44555555544
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.11 E-value=2e-05 Score=84.88 Aligned_cols=231 Identities=12% Similarity=0.090 Sum_probs=115.5
Q ss_pred cccCcccccEEeccCCCCcccC-ccccCCCCCcEEEccCCcCcccch-hhcccccCcEEEcCC-CCCCCCCCCccccCcc
Q 045237 472 GIENLFLLRCLKLDVPSLKSLP-SSLCNLLNLQTLDMPSSYIDHTPE-DIWNMHKLMHLNFGC-ITLPAPPENYCSSLKN 548 (758)
Q Consensus 472 ~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~ 548 (758)
.|.++.+|+.+.+..+ +..++ ..+.++.+|+.+++..+ +..++. .+.++..|+.+.+.. ...+........+|+.
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 3455667777776543 23333 23456677777776554 444433 355666666665544 1122222333445555
Q ss_pred cccccccCCCCCCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccC--CcCCCCCCcc
Q 045237 549 LIFISALHPCSCTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL--SEYQFPPSLT 626 (758)
Q Consensus 549 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp--~~~~l~~~L~ 626 (758)
+.+..... . .....+..+.+|+.+.+..+. ...-...+..+..++.+.... .. +| .+..+ .+|+
T Consensus 235 i~ip~~~~-~-i~~~~f~~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~~~-------~~-i~~~~F~~~-~~L~ 300 (394)
T 4fs7_A 235 IIIPDSFT-E-LGKSVFYGCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIYGS-------VI-VPEKTFYGC-SSLT 300 (394)
T ss_dssp EEECTTCC-E-ECSSTTTTCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEECS-------SE-ECTTTTTTC-TTCC
T ss_pred EEECCCce-e-cccccccccccceeEEcCCCc---ceeeccccccccccceeccCc-------ee-ecccccccc-cccc
Confidence 54332111 0 112234456667766665441 111123344555666555443 11 23 33444 6777
Q ss_pred EEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceE-ECcccccccceeeEe
Q 045237 627 QLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWT-MGARAMTKLESLIIN 705 (758)
Q Consensus 627 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~ 705 (758)
.+.+..+ +.......+.++.+|+.+.|..+ +. .+... .+.++.+|+.+.+... ++.+. ..+..|++|+.+++.
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~-aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKR-SFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTT-TTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHH-hccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 7776543 22223345666777777776522 21 11111 1555667777776542 45553 235566777777765
Q ss_pred ccccCCCCchhhcCCCCCcEE
Q 045237 706 PCAYLKKLPEELWRIESFRKL 726 (758)
Q Consensus 706 ~c~~l~~lp~~l~~l~sL~~L 726 (758)
.+ ++.+...+.++++|+.+
T Consensus 375 ~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 375 KR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp GG--GGGGGGGBCTTCEEEEE
T ss_pred CC--CEEhhheecCCCCCcEE
Confidence 43 33344456666666654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=2.6e-06 Score=79.30 Aligned_cols=88 Identities=9% Similarity=0.054 Sum_probs=49.2
Q ss_pred CCccEEEEeeccCCCCCcccccCCCCCceEEEeccc-cCCceeEEeCCCC----CccccEEeeccCCCcCce-EECcccc
Q 045237 623 PSLTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNS-YSGRKLACVGSGG----FPKLKILHLKSMFWLEEW-TMGARAM 696 (758)
Q Consensus 623 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~~----~~~L~~L~L~~~~~l~~l-~~~~~~l 696 (758)
.+|+.|++++|.++......+..+++|+.|+|++|. +++..... ... .++|+.|+|++|+.++.- -..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 468888888887766666666777777777777664 33222111 111 235666666666555421 0123345
Q ss_pred cccceeeEeccccCCC
Q 045237 697 TKLESLIINPCAYLKK 712 (758)
Q Consensus 697 ~~L~~L~l~~c~~l~~ 712 (758)
++|++|+|++|+.++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 6666666666665543
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=6.2e-06 Score=76.73 Aligned_cols=84 Identities=10% Similarity=0.092 Sum_probs=65.1
Q ss_pred CCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceE-ECccc----ccccceeeEeccccCCCC-chhhcCC
Q 045237 647 PHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWT-MGARA----MTKLESLIINPCAYLKKL-PEELWRI 720 (758)
Q Consensus 647 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~----l~~L~~L~l~~c~~l~~l-p~~l~~l 720 (758)
.+|+.|++++|.++...... ..++++|+.|+|++|..++... ..+.. +++|++|+|++|+.++.- -..+.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 47999999999877655544 4689999999999999887431 11222 468999999999987741 1246679
Q ss_pred CCCcEEEEecCc
Q 045237 721 ESFRKLELHWPQ 732 (758)
Q Consensus 721 ~sL~~L~l~~c~ 732 (758)
++|++|++++||
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999998
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.00019 Score=77.11 Aligned_cols=276 Identities=12% Similarity=0.093 Sum_probs=143.8
Q ss_pred cceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCC---CCCCC-ccccCcccccEEeccCCCCcccCc-cccCCCCC
Q 045237 428 LHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLV---LDQFP-SGIENLFLLRCLKLDVPSLKSLPS-SLCNLLNL 502 (758)
Q Consensus 428 Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L 502 (758)
|+++.+-.. .. .+....|.++++|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ ++.++. .+..+.+|
T Consensus 66 L~sI~iP~s-vt----~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 66 LTSVQIPDT-VT----EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL 139 (394)
T ss_dssp CCEEEECTT-CC----EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred CEEEEECCC-ee----EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence 566655432 11 3445667777777777776542 44443 34556666666665433 444433 34667777
Q ss_pred cEEEccCCcCcccch-hhcccccCcEEEcCC-CCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecC
Q 045237 503 QTLDMPSSYIDHTPE-DIWNMHKLMHLNFGC-ITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDL 580 (758)
Q Consensus 503 ~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 580 (758)
+.+.+..+ +..++. .+..+.+|+.+.+.. ...+....-...+|+.+.+...-.. .....+..+.+|.........
T Consensus 140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~--i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTR--IGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCE--ECTTTTTTCTTCCEEEECCSS
T ss_pred ccccccce-eeeecccceecccccccccccceeeEeccccccccceeEEEECCcccc--cccchhhhccccceecccccc
Confidence 77777543 334433 355666777776654 1122222222234444443221110 112233445555544433221
Q ss_pred chhhhhHHHHhh--------------ccCCCceEEeeecCCCcccccc--cC--CcCCCCCCccEEEEeeccCCCCCccc
Q 045237 581 SSYQSGLSKSLR--------------ELLKLESLKLVNKSKGWQLSQM--IL--SEYQFPPSLTQLSLSNTELKEDPMPT 642 (758)
Q Consensus 581 ~~~~~~l~~~l~--------------~~~~L~~L~L~~~~~~~~~~~l--lp--~~~~l~~~L~~L~L~~~~l~~~~~~~ 642 (758)
.......+. ....+..+.+.. .+ +. .+..+ .+|+.+.+.... .......
T Consensus 217 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--------~v~~i~~~aF~~c-~~L~~i~lp~~~-~~I~~~a 283 (394)
T 4gt6_A 217 ---YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--------GVARIETHAFDSC-AYLASVKMPDSV-VSIGTGA 283 (394)
T ss_dssp ---SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--------TEEEECTTTTTTC-SSCCEEECCTTC-CEECTTT
T ss_pred ---cccccceeecccccccccccccccccccceEEcCC--------cceEcccceeeec-ccccEEeccccc-ceecCcc
Confidence 000000000 011111221111 11 11 34445 778888776543 2233456
Q ss_pred ccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceE-ECcccccccceeeEeccccCCCCch-hhcCC
Q 045237 643 LEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWT-MGARAMTKLESLIINPCAYLKKLPE-ELWRI 720 (758)
Q Consensus 643 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l 720 (758)
+.++++|+.+.+. +.+. .+.... +.++.+|+.+.|.. .++.+. ..+..|.+|+.+.|-.+ ++.++. .+.+|
T Consensus 284 F~~c~~L~~i~l~-~~i~-~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C 356 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRIT-ELPESV-FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNC 356 (394)
T ss_dssp TTTCTTCCEEECC-TTCC-EECTTT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTC
T ss_pred cccccccccccCC-Cccc-ccCcee-ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCC
Confidence 6778888888886 2221 122222 66778899988865 366664 34677889999988543 666654 68889
Q ss_pred CCCcEEEEecCc
Q 045237 721 ESFRKLELHWPQ 732 (758)
Q Consensus 721 ~sL~~L~l~~c~ 732 (758)
++|+.+.+.+..
T Consensus 357 ~~L~~i~~~~~~ 368 (394)
T 4gt6_A 357 TALNNIEYSGSR 368 (394)
T ss_dssp TTCCEEEESSCH
T ss_pred CCCCEEEECCce
Confidence 999999998875
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=1.9e-05 Score=75.13 Aligned_cols=107 Identities=11% Similarity=0.131 Sum_probs=57.4
Q ss_pred cccceEEeccc-cCCcchhhhhHHHhccCCeeEEEEcCCCCCC-----CCCccccCcccccEEeccCCCCcc-----cCc
Q 045237 426 TYLHSLQNFAL-ESDHSALLDCENICKKFKLLRVLNMGSLVLD-----QFPSGIENLFLLRCLKLDVPSLKS-----LPS 494 (758)
Q Consensus 426 ~~Lr~L~~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~-----lp~ 494 (758)
+.+++|.+.++ .........+...+...+.|++|+|++|.+. .+...+...+.|++|+|++|.|.. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 44555555555 4433222333445555666666666666654 233344444566666666666652 445
Q ss_pred cccCCCCCcEEEc--cCCcCcc-----cchhhcccccCcEEEcCC
Q 045237 495 SLCNLLNLQTLDM--PSSYIDH-----TPEDIWNMHKLMHLNFGC 532 (758)
Q Consensus 495 ~i~~L~~L~~L~L--~~~~l~~-----lp~~i~~l~~L~~L~l~~ 532 (758)
.+...++|++|+| ++|.++. +.+.+...++|++|+++.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 5555666666666 5555543 334444455666666554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=2.4e-05 Score=78.46 Aligned_cols=84 Identities=21% Similarity=0.122 Sum_probs=66.6
Q ss_pred HHHhccCCeeEEEEcCCCCCCCC---CccccCcccccEEeccCCCCcccCccccCCC--CCcEEEccCCcCcc-cc----
Q 045237 447 ENICKKFKLLRVLNMGSLVLDQF---PSGIENLFLLRCLKLDVPSLKSLPSSLCNLL--NLQTLDMPSSYIDH-TP---- 516 (758)
Q Consensus 447 ~~~~~~l~~Lr~L~L~~~~l~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~l~~-lp---- 516 (758)
.....+++.|+.|+|++|.++.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.+.. +|
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchh
Confidence 34447889999999999998854 46677899999999999999976 3455555 99999999998753 44
Q ss_pred ---hhhcccccCcEEEcC
Q 045237 517 ---EDIWNMHKLMHLNFG 531 (758)
Q Consensus 517 ---~~i~~l~~L~~L~l~ 531 (758)
..+..+++|+.|+-.
T Consensus 242 y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHCTTCCEESSC
T ss_pred HHHHHHHHCcccCeECCc
Confidence 236788999998754
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.65 E-value=6.8e-06 Score=78.28 Aligned_cols=119 Identities=11% Similarity=0.066 Sum_probs=86.5
Q ss_pred hhhHHHhccCCeeEEEEcCCC-CCC-----CCCccccCcccccEEeccCCCCc-----ccCccccCCCCCcEEEccCCcC
Q 045237 444 LDCENICKKFKLLRVLNMGSL-VLD-----QFPSGIENLFLLRCLKLDVPSLK-----SLPSSLCNLLNLQTLDMPSSYI 512 (758)
Q Consensus 444 ~~~~~~~~~l~~Lr~L~L~~~-~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l 512 (758)
..+...+...+.|+.|+|++| .+. .+...+...++|++|+|++|.|. .+...+...++|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 445677888999999999999 876 35566777889999999999987 3556667778999999999988
Q ss_pred cc-----cchhhcccccCcEEEc--CCCCCCCCCCCccccCcccccccccCCCCCCccccCCCCCCCeEEEEecC
Q 045237 513 DH-----TPEDIWNMHKLMHLNF--GCITLPAPPENYCSSLKNLIFISALHPCSCTPDTLGRLPNVQTLKIYGDL 580 (758)
Q Consensus 513 ~~-----lp~~i~~l~~L~~L~l--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 580 (758)
.. +...+...+.|++|++ +++ .+ +. .+.. .+...+...++|++|++++|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i----~~---------~g~~----~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQ-PL----GN---------NVEM----EIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSS-CC----CH---------HHHH----HHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCC-CC----CH---------HHHH----HHHHHHHhCCCcCEEeccCCC
Confidence 65 4566777778888888 332 11 00 0000 133445566889999999884
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.63 E-value=0.00033 Score=75.22 Aligned_cols=303 Identities=12% Similarity=0.081 Sum_probs=168.1
Q ss_pred ceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccccE
Q 045237 405 TIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRC 481 (758)
Q Consensus 405 ~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~ 481 (758)
.+..+.++ +.....-...+. .+|+++.+..+..... ..+....|..+..|+.+.+..+ ++.++ ..+..+.+|+.
T Consensus 65 ~L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l-~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSCV-KKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCCC-CEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCee-eEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 35666666 443333333443 7888888865421110 0344567888888887776543 44343 45678889999
Q ss_pred EeccCCCCcccC-ccccCCCCCcEEEccCCcCcccchhhcccccCcEEEcCCCC-C-CCCCCCccccCcccccccccCCC
Q 045237 482 LKLDVPSLKSLP-SSLCNLLNLQTLDMPSSYIDHTPEDIWNMHKLMHLNFGCIT-L-PAPPENYCSSLKNLIFISALHPC 558 (758)
Q Consensus 482 L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~-~-~~~~~~~l~~L~~L~l~~~~~~~ 558 (758)
+.+..+ ++.++ ..+..+.+|+.+.+..+ +..+........+|+.+.+.... . -...+..+.++............
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceeccccccccc
Confidence 998653 44443 34678899999998764 55565554445678888776511 1 12234455555544322211100
Q ss_pred --C----------CCccccCCCCCCCeEEEEecCchhhhhHHHHhhccCCCceEEeeecCCCcccccccC--CcCCCCCC
Q 045237 559 --S----------CTPDTLGRLPNVQTLKIYGDLSSYQSGLSKSLRELLKLESLKLVNKSKGWQLSQMIL--SEYQFPPS 624 (758)
Q Consensus 559 --~----------~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~llp--~~~~l~~~ 624 (758)
. ...........+..+.+... ....-...+..+.+|+.+.+...- .. ++ .+..+ ++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~~~-----~~-I~~~aF~~c-~~ 289 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPDSV-----VS-IGTGAFMNC-PA 289 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCTTC-----CE-ECTTTTTTC-TT
T ss_pred ccceeecccccccccccccccccccceEEcCCc---ceEcccceeeecccccEEeccccc-----ce-ecCcccccc-cc
Confidence 0 00001112223333332211 111112356778888888886520 11 23 45555 88
Q ss_pred ccEEEEeeccCCCCCcccccCCCCCceEEEeccccCCceeEEeCCCCCccccEEeeccCCCcCceE-ECcccccccceee
Q 045237 625 LTQLSLSNTELKEDPMPTLEKLPHLLVLKLKQNSYSGRKLACVGSGGFPKLKILHLKSMFWLEEWT-MGARAMTKLESLI 703 (758)
Q Consensus 625 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~ 703 (758)
|+.+.+... +.......+.++.+|+.+.|..+ +. .+... .+.++.+|+.+.|.. +++.+. ..+..|++|+.++
T Consensus 290 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~-aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 290 LQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-IT-QILDD-AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTT-TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEE
T ss_pred cccccCCCc-ccccCceeecCCCCcCEEEeCCc-cc-EehHh-HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEE
Confidence 999888643 33334457888999999999743 21 11111 267788999999964 366664 3577899999999
Q ss_pred EeccccCCCCchhhcCCCCCcEEEEecC
Q 045237 704 INPCAYLKKLPEELWRIESFRKLELHWP 731 (758)
Q Consensus 704 l~~c~~l~~lp~~l~~l~sL~~L~l~~c 731 (758)
+.++... -..+..+.+|+.+.+...
T Consensus 364 ~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 364 YSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp ESSCHHH---HHTCBCCCCC--------
T ss_pred ECCceee---hhhhhccCCCCEEEeCCC
Confidence 9876532 134566788888877643
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.21 E-value=0.0026 Score=67.68 Aligned_cols=77 Identities=8% Similarity=0.039 Sum_probs=43.8
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCC-ccccCcccccEEeccCCCCcccCccccCCCCCcE
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFP-SGIENLFLLRCLKLDVPSLKSLPSSLCNLLNLQT 504 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~ 504 (758)
.+++++.+...-. .+....|.++.+|+.+.|..+ ++.++ ..|.++ .|..+.+.. +++.++...-...+|+.
T Consensus 46 ~~i~~v~ip~~vt-----~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 46 DRISEVRVNSGIT-----SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGCSEEEECTTEE-----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSE
T ss_pred cCCEEEEeCCCcc-----ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCccc
Confidence 5667776643211 445567888888888888643 55443 334454 455555543 34555444333346777
Q ss_pred EEccCC
Q 045237 505 LDMPSS 510 (758)
Q Consensus 505 L~L~~~ 510 (758)
+.+..+
T Consensus 118 i~lp~~ 123 (379)
T 4h09_A 118 FEFPGA 123 (379)
T ss_dssp EECCTT
T ss_pred ccCCCc
Confidence 777654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.87 E-value=0.0092 Score=63.40 Aligned_cols=117 Identities=7% Similarity=-0.005 Sum_probs=54.2
Q ss_pred CceeEEEeeCCCCccccccccc--cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcccccE
Q 045237 404 RTIKRFAVPKNLTKFVSLEHID--TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLFLLRC 481 (758)
Q Consensus 404 ~~~r~Ls~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~ 481 (758)
.+++.+.++ +.........+. .+|+++.+... .. .+....|.++ .|..+.+..+ ++.++.......+|+.
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~----~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VT----SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CC----EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSE
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ce----EechhhhcCC-CCceEECCce-eeEeccceeccCCccc
Confidence 345666666 433333333333 67888877533 21 3445667666 3555555432 4444332222236777
Q ss_pred EeccCCCCcccCccccCCCCCcEEEccCCcCcccc-hhhcccccCcEEEc
Q 045237 482 LKLDVPSLKSLPSSLCNLLNLQTLDMPSSYIDHTP-EDIWNMHKLMHLNF 530 (758)
Q Consensus 482 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l 530 (758)
+.+..+ ++.+....-.-.+|..+.+..+ +..+. ..+..+.+|..+.+
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~ 165 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEV 165 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEE
T ss_pred ccCCCc-cccccccccccceeeeeeccce-eeccccchhccccccccccc
Confidence 777553 3333322222234555444332 22222 22344455555443
No 164
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.86 E-value=0.00099 Score=71.88 Aligned_cols=136 Identities=15% Similarity=0.031 Sum_probs=80.0
Q ss_pred eeecchhhHHHHHHHh-cCCC-----CCC---C--ccccCcceehHHHHHHHhCcccccc-----cCCe-eEEEEECCCC
Q 045237 94 FVYESEKAIDTFFTTI-MQPQ-----SSE---S--ESESTSYKDALVGLQKAFNSNHVKF-----YFDC-RAWVRVSIQY 156 (758)
Q Consensus 94 ~v~Gr~~~~~~i~~~L-~~~~-----~~~---~--~~~~~~~~~~ivGa~~vy~~~~~~~-----~F~~-~~wv~vs~~~ 156 (758)
.++||+++++.+.+.| .... ... - .++.|++++++ |+.+++. ... .|+. .+|+......
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTL--AKFTVKR--VSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHH--HHHHHHH--HHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHH--HHHHHHH--HHHHHhccCCceeEEEEECCCCC
Confidence 3559999999999988 4211 000 1 22334444444 4888773 322 2332 4566665777
Q ss_pred CHHHHHHHHHHhhCCCCCCccccCchhhhHHHHHHHhcC--CCeEEEEEeCCCCh--------hhHHHHHhhCCCC---C
Q 045237 157 NFKKILDDIIKSVMPASGLSEIIGKDYTLKKSILRDYLT--NKKYMTVLDDIYHD--------MIWNDLREALPDY---Q 223 (758)
Q Consensus 157 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~--------~~w~~l~~~~~~~---~ 223 (758)
+...+...|+.+++.... ....+..+.. ..+.+.+. +++++|||||+|.. ..+..+...+... +
T Consensus 99 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~~-~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQ--VRGAPALDIL-KALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp SHHHHHHHHHHHHTCCCC--CTTCCHHHHH-HHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CHHHHHHHHHHHhCCCCC--CCCCCHHHHH-HHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 889999999999866422 0112344555 56666664 68999999999863 2333333322211 2
Q ss_pred --CCcEEEEEeCCcc
Q 045237 224 --NGSRVLITVVDPD 236 (758)
Q Consensus 224 --~gS~iivTTR~~~ 236 (758)
....||+|||...
T Consensus 176 ~~~~v~lI~~~~~~~ 190 (412)
T 1w5s_A 176 GVNRIGFLLVASDVR 190 (412)
T ss_dssp SCCBEEEEEEEEETH
T ss_pred CCceEEEEEEecccc
Confidence 3445888887554
No 165
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.53 E-value=0.0019 Score=64.55 Aligned_cols=80 Identities=24% Similarity=0.118 Sum_probs=60.2
Q ss_pred cccceEEeccccCCcchhhhhHHHhccCCeeEEEEcCCCCCCCCCccccCcc--cccEEeccCCCCc-ccCc-------c
Q 045237 426 TYLHSLQNFALESDHSALLDCENICKKFKLLRVLNMGSLVLDQFPSGIENLF--LLRCLKLDVPSLK-SLPS-------S 495 (758)
Q Consensus 426 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~--~Lr~L~L~~~~i~-~lp~-------~ 495 (758)
++|++|.+.++..... ..++..+..+++|+.|+|++|.++.+ ..+..+. +|++|+|++|.+. .+|. .
T Consensus 170 ~~L~~L~Ls~N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCEEECCCCCCCCC--ccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4677777777776542 23346778999999999999999876 3355555 9999999999987 4552 3
Q ss_pred ccCCCCCcEEEcc
Q 045237 496 LCNLLNLQTLDMP 508 (758)
Q Consensus 496 i~~L~~L~~L~L~ 508 (758)
+..+++|+.||=.
T Consensus 247 l~~~P~L~~LDg~ 259 (267)
T 3rw6_A 247 RERFPKLLRLDGH 259 (267)
T ss_dssp HHHCTTCCEESSC
T ss_pred HHHCcccCeECCc
Confidence 6789999999743
No 166
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.09 E-value=0.0071 Score=64.36 Aligned_cols=135 Identities=13% Similarity=-0.023 Sum_probs=81.4
Q ss_pred eecchhhHHHHHHHhcCCCCCC------CccccCcceehHHHHHHHhCccccccc--------CCeeEEEEECCCC-CHH
Q 045237 95 VYESEKAIDTFFTTIMQPQSSE------SESESTSYKDALVGLQKAFNSNHVKFY--------FDCRAWVRVSIQY-NFK 159 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~~------~~~~~~~~~~~ivGa~~vy~~~~~~~~--------F~~~~wv~vs~~~-~~~ 159 (758)
++||+++++++.+++....... -.++.|++++++ |+.+++ +.... ....+|+..+... +..
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l--a~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFV--SKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHH--HHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHH--HHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 5599999999998875421111 112334444444 477776 33221 2245666666666 788
Q ss_pred HHHHHHHHhhCCCCCCccccCchhhhHHHHHHHhcCCCeEEEEEeCCCChhh---HHH-HHhhCCCCCCCcEEEEEeCCc
Q 045237 160 KILDDIIKSVMPASGLSEIIGKDYTLKKSILRDYLTNKKYMTVLDDIYHDMI---WND-LREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 160 ~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~~~---w~~-l~~~~~~~~~gS~iivTTR~~ 235 (758)
.+...++.++.+... +....+..... ..+.+.+..++.+|||||++.... .+. +...+... .+.+||+||+..
T Consensus 98 ~~~~~l~~~l~~~~~-~~~~~~~~~~~-~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 98 AVLSSLAGKLTGFSV-PKHGINLGEYI-DKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHCSCC-CSSSSCTHHHH-HHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred HHHHHHHHHhcCCCC-CCCCCCHHHHH-HHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 899999988843221 11112345566 777788877767999999986532 222 22222222 688999999986
Q ss_pred c
Q 045237 236 D 236 (758)
Q Consensus 236 ~ 236 (758)
.
T Consensus 175 ~ 175 (384)
T 2qby_B 175 N 175 (384)
T ss_dssp T
T ss_pred c
Confidence 3
No 167
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.81 E-value=0.006 Score=63.86 Aligned_cols=132 Identities=9% Similarity=0.048 Sum_probs=74.5
Q ss_pred eeecchhhHHHHHHHhcCCCCCCCccccCcceehHHHHHHHhCcccccccCCeeEEEEECCCC------CHHHHHHHHHH
Q 045237 94 FVYESEKAIDTFFTTIMQPQSSESESESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSIQY------NFKKILDDIIK 167 (758)
Q Consensus 94 ~v~Gr~~~~~~i~~~L~~~~~~~~~~~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~~~------~~~~i~~~i~~ 167 (758)
.++||+++.+.+.+++......--.++.|++|++++ +.+.+. . . .+|+.+.... +...+.+.+..
T Consensus 13 ~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll--~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (350)
T 2qen_A 13 DIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLL--RAFLNE--R----P-GILIDCRELYAERGHITREELIKELQS 83 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHH--HHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHH--HHHHHH--c----C-cEEEEeecccccccCCCHHHHHHHHHH
Confidence 356999999999998864211112234556666665 777663 2 2 5666654322 55666666666
Q ss_pred hhCC---------------CCCCccccCchhhhHHHHHHHhcCC-CeEEEEEeCCCChh--------h-HHHHHhhCCCC
Q 045237 168 SVMP---------------ASGLSEIIGKDYTLKKSILRDYLTN-KKYMTVLDDIYHDM--------I-WNDLREALPDY 222 (758)
Q Consensus 168 ~l~~---------------~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDDvw~~~--------~-w~~l~~~~~~~ 222 (758)
.+.. ....+....+..+.. ..+.+.... ++++||+||++... + +..+......
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~- 161 (350)
T 2qen_A 84 TISPFQKFQSKFKISLNLKFLTLEPRKLSLREVF-RELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS- 161 (350)
T ss_dssp HSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHH-HHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHhHhhhceeEEEecceeeccccchHHHHH-HHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-
Confidence 5532 000000112444555 556555543 38999999998632 2 3333332221
Q ss_pred CCCcEEEEEeCCcc
Q 045237 223 QNGSRVLITVVDPD 236 (758)
Q Consensus 223 ~~gS~iivTTR~~~ 236 (758)
.++.++|+|++...
T Consensus 162 ~~~~~~il~g~~~~ 175 (350)
T 2qen_A 162 LPNLKIILTGSEVG 175 (350)
T ss_dssp CTTEEEEEEESSHH
T ss_pred cCCeEEEEECCcHH
Confidence 24789999988753
No 168
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.27 E-value=0.051 Score=57.56 Aligned_cols=136 Identities=11% Similarity=-0.048 Sum_probs=79.5
Q ss_pred eeecchhhHHHHHHHhcCCCCCC------CccccCcceehHHHHHHHhCcccccccC-----C-eeEEEEECCCCCHHHH
Q 045237 94 FVYESEKAIDTFFTTIMQPQSSE------SESESTSYKDALVGLQKAFNSNHVKFYF-----D-CRAWVRVSIQYNFKKI 161 (758)
Q Consensus 94 ~v~Gr~~~~~~i~~~L~~~~~~~------~~~~~~~~~~~ivGa~~vy~~~~~~~~F-----~-~~~wv~vs~~~~~~~i 161 (758)
.++||+++++.+..++....... -.++.|+++++++ +.+++ .....+ . ..+|+......+...+
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~--~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA--RLVLR--RLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH--HHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH--HHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 35599999999999885421111 1123444455544 77776 332211 1 2456666677788899
Q ss_pred HHHHHHhhCCCCCCccccCchhhhHHHHHHHhc--CCCeEEEEEeCCCChh----hHHHHH---hhCCCC--CCCcEEEE
Q 045237 162 LDDIIKSVMPASGLSEIIGKDYTLKKSILRDYL--TNKKYMTVLDDIYHDM----IWNDLR---EALPDY--QNGSRVLI 230 (758)
Q Consensus 162 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDDvw~~~----~w~~l~---~~~~~~--~~gS~iiv 230 (758)
...++.+++.... ....+..+.. ..+.+.+ .+++.+|||||++... ..+.+. ...... ..+..+|.
T Consensus 96 ~~~l~~~l~~~~~--~~~~~~~~~~-~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 96 ASAIAEAVGVRVP--FTGLSVGEVY-ERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHSCCCC--SSCCCHHHHH-HHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHhCCCCC--CCCCCHHHHH-HHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 9999999966432 1112344555 5666666 4568999999998653 223332 222211 44678888
Q ss_pred EeCCcc
Q 045237 231 TVVDPD 236 (758)
Q Consensus 231 TTR~~~ 236 (758)
||+...
T Consensus 173 ~t~~~~ 178 (387)
T 2v1u_A 173 ITNSLG 178 (387)
T ss_dssp ECSCST
T ss_pred EECCCc
Confidence 888763
No 169
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.83 E-value=0.022 Score=60.32 Aligned_cols=137 Identities=13% Similarity=0.051 Sum_probs=79.4
Q ss_pred eeecchhhHHHHHHHhcCC---CCCC---CccccCcceehHHHHHHHhCcccccccCC---eeEEEEECCCCCHHHHHHH
Q 045237 94 FVYESEKAIDTFFTTIMQP---QSSE---SESESTSYKDALVGLQKAFNSNHVKFYFD---CRAWVRVSIQYNFKKILDD 164 (758)
Q Consensus 94 ~v~Gr~~~~~~i~~~L~~~---~~~~---~~~~~~~~~~~ivGa~~vy~~~~~~~~F~---~~~wv~vs~~~~~~~i~~~ 164 (758)
.++||+++++.+.+++... .... -.++.|+++++++ +.+.+ .....|. ..+|+..+...+...+...
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~--~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV--KFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH--HHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH--HHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 3559999999999988642 1111 1123444455544 78877 4444432 3456665566677888888
Q ss_pred HHHhhCCCCCCccccCchhhhHHHHHHHhcC--CCeEEEEEeCCCCh------hhHHHHHhhCCC-CCCCcEEEEEeCCc
Q 045237 165 IIKSVMPASGLSEIIGKDYTLKKSILRDYLT--NKKYMTVLDDIYHD------MIWNDLREALPD-YQNGSRVLITVVDP 235 (758)
Q Consensus 165 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~------~~w~~l~~~~~~-~~~gS~iivTTR~~ 235 (758)
++.+++..... ...+..+.. ..+.+.+. +++.+|||||++.. ..+..+...+.. ...+..+|+||+..
T Consensus 97 i~~~l~~~~~~--~~~~~~~~~-~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 97 LLESLDVKVPF--TGLSIAELY-RRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HTTTTSCCCCS--SSCCHHHHH-HHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHhCCCCCC--CCCCHHHHH-HHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 88887553221 111344444 55555553 45899999999763 234444433321 23356778888876
Q ss_pred cc
Q 045237 236 DI 237 (758)
Q Consensus 236 ~v 237 (758)
..
T Consensus 174 ~~ 175 (386)
T 2qby_A 174 KF 175 (386)
T ss_dssp GG
T ss_pred Ch
Confidence 43
No 170
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.79 E-value=0.06 Score=57.09 Aligned_cols=136 Identities=13% Similarity=0.038 Sum_probs=83.1
Q ss_pred eeecchhhHHHHHHHhcCC---CCC-----CCccccCcceehHHHHHHHhCcccccccC-CeeEEEEECCCCCHHHHHHH
Q 045237 94 FVYESEKAIDTFFTTIMQP---QSS-----ESESESTSYKDALVGLQKAFNSNHVKFYF-DCRAWVRVSIQYNFKKILDD 164 (758)
Q Consensus 94 ~v~Gr~~~~~~i~~~L~~~---~~~-----~~~~~~~~~~~~ivGa~~vy~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~ 164 (758)
.++||+++++++..++... ... --.++.|+++++++ +.+.+ ...... -..+|+..+...+...+...
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~--~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL--RKLWE--LYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH--HHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH--HHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3559999999999988642 110 01223444455554 77776 333221 23456666677788899999
Q ss_pred HHHhhCCCCCCccccCchhhhHHHHHHHhcC--CCeEEEEEeCCCCh--hhHHHHHhhCCCCC----CCcEEEEEeCCcc
Q 045237 165 IIKSVMPASGLSEIIGKDYTLKKSILRDYLT--NKKYMTVLDDIYHD--MIWNDLREALPDYQ----NGSRVLITVVDPD 236 (758)
Q Consensus 165 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~--~~w~~l~~~~~~~~----~gS~iivTTR~~~ 236 (758)
++..++.... ....+..+.. ..+.+.+. +++.+|||||++.. .....+...+.... .+..||+||+...
T Consensus 94 l~~~l~~~~~--~~~~~~~~~~-~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 94 IARSLNIPFP--RRGLSRDEFL-ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHTTCCCC--SSCCCHHHHH-HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHhCccCC--CCCCCHHHHH-HHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 9998865322 1112344444 55555553 56899999999764 45666666554322 4778888888764
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.68 E-value=0.039 Score=57.67 Aligned_cols=67 Identities=12% Similarity=-0.036 Sum_probs=42.9
Q ss_pred CcchhHHHHHhHhcccCCCceeeHhHHHHHHH-HcCCCCCChHHHHHHHHHHHHhCccccccccCCCCCeeEEE-cCHHH
Q 045237 301 ELPLYLKFCCFYLCVFYGNLEISTRQLYQLWM-AEGFVAHNSEANAEEYLKELISRGLIKVGKRSAGGKIKTCS-VPSSV 378 (758)
Q Consensus 301 ~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~-a~g~i~~~~~~~~~~~~~~Lv~~sll~~~~~~~~~~~~~~~-mHdli 378 (758)
.|++..+..+..+|+ +. +...+..... ..|. .........+++.|++.+++.... + .|+ .|+++
T Consensus 287 ~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~--~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~ 352 (357)
T 2fna_A 287 IARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI--EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLI 352 (357)
T ss_dssp GGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS--CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHH
T ss_pred cccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHH
Confidence 688889999999998 22 4445443221 2231 012345678999999999998653 1 354 57787
Q ss_pred HHH
Q 045237 379 WAR 381 (758)
Q Consensus 379 ~dl 381 (758)
++.
T Consensus 353 ~~~ 355 (357)
T 2fna_A 353 SLA 355 (357)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 172
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.64 E-value=0.051 Score=47.69 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=38.6
Q ss_pred EEEcCCCCCC--CCCccccCcccccEEeccCCCCcccCcc-ccCCCCCcEEEccCCcC
Q 045237 458 VLNMGSLVLD--QFPSGIENLFLLRCLKLDVPSLKSLPSS-LCNLLNLQTLDMPSSYI 512 (758)
Q Consensus 458 ~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l 512 (758)
+++.++..++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5677777777 7776543 3678888888888877765 46778888888888755
No 173
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.31 E-value=0.054 Score=51.13 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=57.0
Q ss_pred cccceEEeccc-cCCcchhhhhHHHhccCCeeEEEEcCCCCCC-----CCCccccCcccccEEeccCCCCc-----ccCc
Q 045237 426 TYLHSLQNFAL-ESDHSALLDCENICKKFKLLRVLNMGSLVLD-----QFPSGIENLFLLRCLKLDVPSLK-----SLPS 494 (758)
Q Consensus 426 ~~Lr~L~~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~ 494 (758)
+.|+.|.+.++ .........+...+..-+.|+.|+|++|.+. .+-..+..-+.|+.|+|++|.|. .+-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 44566665543 3332212334455566667777777777765 23344444566777777777665 2334
Q ss_pred cccCCCCCcEEEccCC---cCc-----ccchhhcccccCcEEEcC
Q 045237 495 SLCNLLNLQTLDMPSS---YID-----HTPEDIWNMHKLMHLNFG 531 (758)
Q Consensus 495 ~i~~L~~L~~L~L~~~---~l~-----~lp~~i~~l~~L~~L~l~ 531 (758)
.+..-+.|++|+|+++ .+. .+-+.+..-+.|+.|+++
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 4444556777777654 222 123334444566666654
No 174
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.86 E-value=0.082 Score=46.38 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=44.3
Q ss_pred cEEeccCCCCc--ccCccccCCCCCcEEEccCCcCcccchh-hcccccCcEEEcCCC
Q 045237 480 RCLKLDVPSLK--SLPSSLCNLLNLQTLDMPSSYIDHTPED-IWNMHKLMHLNFGCI 533 (758)
Q Consensus 480 r~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~ 533 (758)
..++.++++++ .+|..+. .+|++|+|++|.|..+|.+ +..+++|+.|++.++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 47888888998 9997654 5799999999999999876 678999999999863
No 175
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.57 E-value=0.084 Score=49.77 Aligned_cols=89 Identities=9% Similarity=0.094 Sum_probs=62.9
Q ss_pred hhhHHHhccCCeeEEEEcCCC-CCC-----CCCccccCcccccEEeccCCCCc-----ccCccccCCCCCcEEEccCCcC
Q 045237 444 LDCENICKKFKLLRVLNMGSL-VLD-----QFPSGIENLFLLRCLKLDVPSLK-----SLPSSLCNLLNLQTLDMPSSYI 512 (758)
Q Consensus 444 ~~~~~~~~~l~~Lr~L~L~~~-~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l 512 (758)
..+...+.+-+.|+.|+|+++ .+. .+-..+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++|.|
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 344566677788999999985 665 34455666678999999999887 4455566668899999999987
Q ss_pred cc-----cchhhcccccCcEEEcCC
Q 045237 513 DH-----TPEDIWNMHKLMHLNFGC 532 (758)
Q Consensus 513 ~~-----lp~~i~~l~~L~~L~l~~ 532 (758)
+. +-+.+..-+.|++|++++
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCC
Confidence 53 334444455577777653
No 176
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.94 E-value=0.41 Score=46.31 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=32.1
Q ss_pred CCCeEEEEEeCCCC--hhhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 195 TNKKYMTVLDDIYH--DMIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 195 ~~kr~LlVLDDvw~--~~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
.+++.+||+||++. ...++.+...+.....+.++|+||+...
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 35689999999965 4567777777665566889999998764
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.28 E-value=0.94 Score=43.01 Aligned_cols=119 Identities=11% Similarity=-0.001 Sum_probs=63.1
Q ss_pred eecchhhHHHHHHHhcCCCCCC--CccccCcceehHHHHHHHhCcccccccCCeeEEEEE--CCCCCHHHHHHHHHHhhC
Q 045237 95 VYESEKAIDTFFTTIMQPQSSE--SESESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRV--SIQYNFKKILDDIIKSVM 170 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~~--~~~~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~l~ 170 (758)
++|+++.++.+.+++....... -.++.|++++.++ +.+.+ +.........|+.+ +...+...+...+.....
T Consensus 19 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~--~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 19 VVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA--IALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHH--HHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHH--HHHHH--HHhccccccceEEeccccccChHHHHHHHHHHhc
Confidence 4599999999999986542211 1123445555554 66655 22222212223333 333333322222211110
Q ss_pred CCCCCccccCchhhhHHHHHHHhcCCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 171 PASGLSEIIGKDYTLKKSILRDYLTNKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
.. . .-.+++.+||+||++.. ..++.+...+.....+.++|+||+...
T Consensus 95 ~~-~------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 95 TA-P------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp SC-C------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cc-C------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 00 0 01357899999999864 445666655555556789999988764
No 178
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.43 E-value=0.57 Score=47.79 Aligned_cols=110 Identities=8% Similarity=0.017 Sum_probs=58.6
Q ss_pred eecchhhHHHHHHHhcCCCCCCCc------cccCcceehHHHHHHHhCcccccc---cCCeeEEEE--ECCCCCHHHHHH
Q 045237 95 VYESEKAIDTFFTTIMQPQSSESE------SESTSYKDALVGLQKAFNSNHVKF---YFDCRAWVR--VSIQYNFKKILD 163 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~~~~------~~~~~~~~~ivGa~~vy~~~~~~~---~F~~~~wv~--vs~~~~~~~i~~ 163 (758)
+.|||++.++|...|...-..+.. ++.|.+++++ |+.|.+.-.-.. ......+|. .....+...+..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~--v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQL--VNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHH--HHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHH--HHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 459999999999887542211111 1233333333 488877321111 111233444 445567889999
Q ss_pred HHHHhhCCCCCCccccCchhhhHHHHHHHh--cCCCeEEEEEeCCCCh
Q 045237 164 DIIKSVMPASGLSEIIGKDYTLKKSILRDY--LTNKKYMTVLDDIYHD 209 (758)
Q Consensus 164 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVLDDvw~~ 209 (758)
.|++++.+.... .......+. ..+... -.+++++++||++...
T Consensus 100 ~I~~~L~g~~~~--~~~~~~~L~-~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 100 KIWFAISKENLC--GDISLEALN-FYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHSCCC----CCCCHHHHH-HHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHhcCCCCC--chHHHHHHH-HHHHHhhhccCCceEEEEecHHHh
Confidence 999999764320 111222233 333321 2467899999999864
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.66 E-value=1.5 Score=44.59 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=29.0
Q ss_pred CCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 195 TNKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 195 ~~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
.+++.++|+||++.. ..++.+...+.....++++|+||+...
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 456889999999864 345555554444456788999987754
No 180
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=68.26 E-value=3.5 Score=41.84 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=30.3
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
+++.++|+||++.. ..++.+...+.....++++|+||+...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 56789999999864 456666666555556789999987764
No 181
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=63.85 E-value=3.2 Score=38.02 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=24.1
Q ss_pred eecchhhHHHHHHHhcCCCCCC--CccccCcceehHHHHHHHhC
Q 045237 95 VYESEKAIDTFFTTIMQPQSSE--SESESTSYKDALVGLQKAFN 136 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~~--~~~~~~~~~~~ivGa~~vy~ 136 (758)
++||+++++++.+.+....... -.++.|++++.++ +.+.+
T Consensus 24 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~--~~~~~ 65 (195)
T 1jbk_A 24 VIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV--EGLAQ 65 (195)
T ss_dssp CCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHH--HHHHH
T ss_pred cccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH--HHHHH
Confidence 4599999999999986532110 1233455555554 55554
No 182
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=58.21 E-value=4 Score=38.16 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=18.6
Q ss_pred EEEEeCCCCh--hhHH--HHHh-hCCC-CCCCcEEEEEeCCc
Q 045237 200 MTVLDDIYHD--MIWN--DLRE-ALPD-YQNGSRVLITVVDP 235 (758)
Q Consensus 200 LlVLDDvw~~--~~w~--~l~~-~~~~-~~~gS~iivTTR~~ 235 (758)
+|||||++.. ..|. .+.. .+.. ...+.++|+||...
T Consensus 118 ~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 118 VLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp EEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 8999999653 2221 1111 1111 12356788887754
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=50.87 E-value=11 Score=40.26 Aligned_cols=95 Identities=18% Similarity=0.172 Sum_probs=49.6
Q ss_pred ccCcceehHHHHHHHhCcccccccCCeeEEEEECCCCCHHHHHHHHHHhhCCCCCCccccCchhhhHHHHHHHhcCCCeE
Q 045237 120 ESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSIQYNFKKILDDIIKSVMPASGLSEIIGKDYTLKKSILRDYLTNKKY 199 (758)
Q Consensus 120 ~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 199 (758)
+.|++++.+ |+++.+ .+...|...-++.+ +...+..++...+.... . ..+.+.+..+.-
T Consensus 138 p~G~GKTtL--a~aia~--~l~~~~~~~~v~~v----~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~ 196 (440)
T 2z4s_A 138 GVGLGKTHL--LQSIGN--YVVQNEPDLRVMYI----TSEKFLNDLVDSMKEGK------------L-NEFREKYRKKVD 196 (440)
T ss_dssp SSSSSHHHH--HHHHHH--HHHHHCCSSCEEEE----EHHHHHHHHHHHHHTTC------------H-HHHHHHHTTTCS
T ss_pred CCCCCHHHH--HHHHHH--HHHHhCCCCeEEEe----eHHHHHHHHHHHHHccc------------H-HHHHHHhcCCCC
Confidence 344555555 488887 45444433222332 23344555555543221 1 334444554667
Q ss_pred EEEEeCCCChh----hHHHHHhhCCC-CCCCcEEEEEeCCc
Q 045237 200 MTVLDDIYHDM----IWNDLREALPD-YQNGSRVLITVVDP 235 (758)
Q Consensus 200 LlVLDDvw~~~----~w~~l~~~~~~-~~~gS~iivTTR~~ 235 (758)
+|++||+.... .-+.+...+.. ...|..||+||...
T Consensus 197 vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 197 ILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp EEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 99999996532 22333333321 23578899998764
No 184
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=49.43 E-value=62 Score=32.41 Aligned_cols=115 Identities=13% Similarity=0.123 Sum_probs=59.8
Q ss_pred eecchhhHHHHHHHhcCCCCCC---CccccCcceehHHHHHHHhCcccccccCCeeEEEEECCCCCHHHHHHHHHHhhCC
Q 045237 95 VYESEKAIDTFFTTIMQPQSSE---SESESTSYKDALVGLQKAFNSNHVKFYFDCRAWVRVSIQYNFKKILDDIIKSVMP 171 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~~~~~~---~~~~~~~~~~~ivGa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 171 (758)
++|.++.++.+.+++....... -.++.|++++.++ +++.+ +... ..+.+..+. .....+. +++.....
T Consensus 28 ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la--~~la~--~l~~---~~~~i~~~~-~~~~~i~-~~~~~~~~ 98 (324)
T 3u61_B 28 CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVA--KALCH--DVNA---DMMFVNGSD-CKIDFVR-GPLTNFAS 98 (324)
T ss_dssp SCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHH--HHHHH--HTTE---EEEEEETTT-CCHHHHH-THHHHHHH
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHH--HHHHH--HhCC---CEEEEcccc-cCHHHHH-HHHHHHHh
Confidence 4599999999999987533211 1123455555554 77766 2211 122333222 2222222 11111100
Q ss_pred CCCCccccCchhhhHHHHHHHhcCCCeEEEEEeCCCChh---hHHHHHhhCCCCCCCcEEEEEeCCccc
Q 045237 172 ASGLSEIIGKDYTLKKSILRDYLTNKKYMTVLDDIYHDM---IWNDLREALPDYQNGSRVLITVVDPDI 237 (758)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~~---~w~~l~~~~~~~~~gS~iivTTR~~~v 237 (758)
. ....+++-+|++||+.... ..+.+...+.....+.++|+||....-
T Consensus 99 ~-------------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 99 A-------------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp B-------------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred h-------------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 0 0113477899999998753 445555444333356788888877643
No 185
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.70 E-value=56 Score=33.38 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=29.1
Q ss_pred CCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 195 TNKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 195 ~~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
.+++.++|+||+... ..++.+...+.....+..+|++|....
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 356789999999753 456666666655455778888887554
No 186
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=40.07 E-value=36 Score=33.86 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=30.1
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
+++-++|+||+... ...+.+...+.....+.++|+||....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 56789999999754 445667666666566788888887654
No 187
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=33.62 E-value=45 Score=32.63 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=13.3
Q ss_pred eecchhhHHHHHHHhc
Q 045237 95 VYESEKAIDTFFTTIM 110 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~ 110 (758)
++|.++.++.+.+.+.
T Consensus 19 i~G~~~~~~~l~~~~~ 34 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVE 34 (285)
T ss_dssp SCSCHHHHHHHHHHTH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5599999999988774
No 188
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=31.78 E-value=76 Score=31.37 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=25.1
Q ss_pred eEEEEEeCCC-----------ChhhHHHHHhhCCCCCCCcEEEEEeCCc
Q 045237 198 KYMTVLDDIY-----------HDMIWNDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 198 r~LlVLDDvw-----------~~~~w~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
.-+|++|++. .....+.+...+.....+..||.||...
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 3599999998 3344555655555555567888887654
No 189
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=28.82 E-value=1e+02 Score=26.46 Aligned_cols=37 Identities=14% Similarity=-0.119 Sum_probs=22.4
Q ss_pred EEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCc
Q 045237 199 YMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDP 235 (758)
Q Consensus 199 ~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~ 235 (758)
-.|+||++... .....+...+.......+||.||...
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 46899999864 33444554443334456777777643
No 190
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=27.66 E-value=28 Score=31.48 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=22.1
Q ss_pred CeEEEEEeCCCC--hhhHH--HHHhhCCC-CCCCcEEEEEeCCc
Q 045237 197 KKYMTVLDDIYH--DMIWN--DLREALPD-YQNGSRVLITVVDP 235 (758)
Q Consensus 197 kr~LlVLDDvw~--~~~w~--~l~~~~~~-~~~gS~iivTTR~~ 235 (758)
+.-+|||||++. ...|. .+...+.. ...|..||+||...
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 345899999983 23332 22222221 12477888888655
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=26.98 E-value=1.8e+02 Score=30.63 Aligned_cols=43 Identities=21% Similarity=0.170 Sum_probs=25.0
Q ss_pred CCCeEEEEEeCCCCh-------------hhHHHHHhhCCC---CCCCcEEEEEeCCccc
Q 045237 195 TNKKYMTVLDDIYHD-------------MIWNDLREALPD---YQNGSRVLITVVDPDI 237 (758)
Q Consensus 195 ~~kr~LlVLDDvw~~-------------~~w~~l~~~~~~---~~~gS~iivTTR~~~v 237 (758)
..+..+|++|++... .....+...+.. ...+..||.||...+.
T Consensus 225 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ 283 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 283 (444)
T ss_dssp HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGG
T ss_pred HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccc
Confidence 356789999999853 112334444432 2345677777766543
No 192
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=25.46 E-value=47 Score=18.91 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=14.7
Q ss_pred hCCCCCCCcEEEEEeCCcc
Q 045237 218 ALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 218 ~~~~~~~gS~iivTTR~~~ 236 (758)
|+|.-..|+.++|||...+
T Consensus 3 PlPa~eeGaT~lVtTKT~d 21 (26)
T 2gkw_B 3 PVPATELGSTELVTTKTAG 21 (26)
T ss_pred cccccccCceEEEEeccCC
Confidence 5666678999999997653
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=21.71 E-value=1.3e+02 Score=26.53 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=14.7
Q ss_pred eecchhhHHHHHHHhcC
Q 045237 95 VYESEKAIDTFFTTIMQ 111 (758)
Q Consensus 95 v~Gr~~~~~~i~~~L~~ 111 (758)
++|++.+++.+.+.+..
T Consensus 24 ~~g~~~~~~~l~~~l~~ 40 (187)
T 2p65_A 24 VIGRDTEIRRAIQILSR 40 (187)
T ss_dssp CCSCHHHHHHHHHHHTS
T ss_pred hhcchHHHHHHHHHHhC
Confidence 55999999999999865
No 194
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.82 E-value=81 Score=31.80 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=26.2
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCcc
Q 045237 196 NKKYMTVLDDIYHD--MIWNDLREALPDYQNGSRVLITVVDPD 236 (758)
Q Consensus 196 ~kr~LlVLDDvw~~--~~w~~l~~~~~~~~~gS~iivTTR~~~ 236 (758)
.++-+|++|++... ...+.+...+.......++|++|....
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 45679999998754 334555555444445678888876553
Done!