BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045240
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 44 LLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLL 103
L++AAE GN + +L+ + D V+ D +G++ H+A N H V L+ QG +
Sbjct: 8 LIEAAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD---- 62
Query: 104 ATYLDSCGNNILHLAA-------------KYRSPSPYRTVSGAALEMQRELLIYKEVE-- 148
DS G LHLAA + P+ + L + E +KEV
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE-NGHKEVVKL 121
Query: 149 MIVQPSYREMKNYDGKTP----RELFTVEHLELLRRDEQWMK 186
++ Q + + DG+TP RE E ++LL + W++
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 47/173 (27%)
Query: 44 LLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLL 103
L++AAE GN + +LI + D V+ D +GR+ H A H + L+ +G +
Sbjct: 8 LIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD---- 62
Query: 104 ATYLDSCGNNILHLAAKY-----------------------RSPSPYRTVSGAALEMQRE 140
DS G LH AAK R+P Y AA E +E
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHY-----AAKEGHKE 117
Query: 141 ---LLIYKEVEMIVQPSYREMKNYDGKTP----RELFTVEHLELLRRDEQWMK 186
LLI K ++ S DG+TP RE E ++LL + W++
Sbjct: 118 IVKLLISKGADVNTSDS-------DGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 37/168 (22%)
Query: 44 LLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLL 103
L++AAE GN + +LI + D V+ D +GR+ H A N H V L+ +G +
Sbjct: 8 LIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD---- 62
Query: 104 ATYLDSCGNNILHLAAKYR-----------------SPSPYRT-VSGAALEMQRE---LL 142
DS G LH AA+ S RT + AA +E LL
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 143 IYKEVEMIVQPSYREMKNYDGKTP----RELFTVEHLELLRRDEQWMK 186
I K ++ S DG+TP RE E ++LL + W++
Sbjct: 123 ISKGADVNTSDS-------DGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 12 NQALELVKCLWKEINRQQDVDVAEV-IRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHEL 70
N LE+VK L + DV+ + R P +L AA G+ + L+ + D V+
Sbjct: 12 NGHLEVVKLLLEA---GADVNAKDKNGRTPLHL---AARNGHLEVVKLLLEAGAD-VNAK 64
Query: 71 DENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAK 120
D+NGR+ H+A N H+ V L+ E G + D G LHLAA+
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAAR 110
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 38 RKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQG 97
R P +L AA G+ + L+ + D V+ D+NGR+ H+A N H+ V L+ E G
Sbjct: 3 RTPLHL---AARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 98 FNKQLLATYLDSCGNNILHLAAK 120
+ D G LHLAA+
Sbjct: 59 AD----VNAKDKNGRTPLHLAAR 77
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 12 NQALELVKCLWKEINRQQDVDVAEV-IRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHEL 70
N LE+VK L + DV+ + R P +L AA G+ + L+ + D V+
Sbjct: 45 NGHLEVVKLLLEA---GADVNAKDKNGRTPLHL---AARNGHLEVVKLLLEAGAD-VNAK 97
Query: 71 DENGRSIFHIAILNRHMNVFNLIYEQG 97
D+NGR+ H+A N H+ V L+ E G
Sbjct: 98 DKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 73 NGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAK 120
NGR+ H+A N H+ V L+ E G + D G LHLAA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAAR 44
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 38 RKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQG 97
R P +L AA G+ + L+ + D V+ D+NGR+ H+A N H+ V L+ E G
Sbjct: 3 RTPLHL---AARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 98 FNKQLLATYLDSCGNNILHLAAK 120
+ D G LHLAA+
Sbjct: 59 AD----VNAKDKNGRTPLHLAAR 77
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 12 NQALELVKCLWKEINRQQDVDVAEVI-RKPTNLLLDAAEVGNFRFLAELIGSYPDFVHEL 70
N LE+VK L + DV+ + R P +L AA G+ + L+ + D V+
Sbjct: 12 NGHLEVVKLL---LEAGADVNAKDKNGRTPLHL---AARNGHLEVVKLLLEAGAD-VNAK 64
Query: 71 DENGRSIFHIAILNRHMNVFNLIYEQG 97
D+NGR+ H+A N H+ V L+ E G
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 73 NGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAK 120
NGR+ H+A N H+ V L+ E G + D G LHLAA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAAR 44
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 44 LLDAAEVGNFRFLAELI--GSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQ 101
L++AAE GN + +L+ G+ P+ D +GR+ H A N H + L+ +G +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNAS---DSDGRTPLHYAAENGHKEIVKLLLSKGAD-- 62
Query: 102 LLATYLDSCGNNILHLAAK 120
DS G LH AA+
Sbjct: 63 --PNAKDSDGRTPLHYAAE 79
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 32/146 (21%)
Query: 47 AAEVGNFRFLAELI--GSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLA 104
AAE G+ + L+ G+ P+ D +GR+ H A N H + L+ +G +
Sbjct: 44 AAENGHKEIVKLLLSKGADPNAK---DSDGRTPLHYAAENGHKEIVKLLLSKGAD----P 96
Query: 105 TYLDSCGNNILHLAAKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGK 164
DS G LH AA+ + ++ + +LL+ K + S DG+
Sbjct: 97 NAKDSDGRTPLHYAAE----NGHKEIV--------KLLLSKGADPNTSDS-------DGR 137
Query: 165 TP----RELFTVEHLELLRRDEQWMK 186
TP RE E ++LL + W++
Sbjct: 138 TPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 51 GNFRFLAELIGSYPDFVHELD--ENGRSI-FHIAILNRHMNVFNLIYEQGFNKQLLATYL 107
GN + L+ + ELD N R H+A++ +V L+ G + L
Sbjct: 20 GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM----AL 75
Query: 108 DSCGNNILHLAAKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGKT 165
D G HLA ++RSP+ R + +A +L E +NYDG T
Sbjct: 76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL---------------EARNYDGLT 118
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 44 LLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLL 103
LL+AA G + L+ + D E D+ G + H+A +N H+ + ++ + G +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGAD---- 72
Query: 104 ATYLDSCGNNILHLAAKY 121
+D+ G LHL A Y
Sbjct: 73 VNAIDAIGETPLHLVAMY 90
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 44 LLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQG 97
LL+AA G + L+ + D V D+NG + H+A N H+ V L+ E G
Sbjct: 10 LLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 62
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 44 LLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQG 97
LL+AA G + L+ + D V D+NG + H+A N H+ V L+ E G
Sbjct: 28 LLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 44 LLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLL 103
LL+AA G + L+ + D V+ D+NG + H+A N + + ++ + G +
Sbjct: 10 LLEAAAAGQDDEVRILMANGAD-VNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD---- 64
Query: 104 ATYLDSCGNNILHLAA 119
DS G LHLAA
Sbjct: 65 VNASDSAGITPLHLAA 80
>pdb|3CQY|A Chain A, Crystal Structure Of A Functionally Unknown Protein
(So_1313) From Shewanella Oneidensis Mr-1
pdb|3CQY|B Chain B, Crystal Structure Of A Functionally Unknown Protein
(So_1313) From Shewanella Oneidensis Mr-1
Length = 370
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 54 RFLAELIGSYPDFVHELDEN-GRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGN 112
+ LA+L+ S+P F ++ GR +F+ A L + ++ FN + E+ LL S
Sbjct: 224 QLLAQLL-SHPYFSLAYPKSTGRELFNQAWLEQQLSAFNQLNEEDIQSTLLDLTCHSIAQ 282
Query: 113 NILHLA 118
+IL LA
Sbjct: 283 DILKLA 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,586,942
Number of Sequences: 62578
Number of extensions: 306558
Number of successful extensions: 796
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 38
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)